<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:52:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340947" ref_strand="+" ref_description="SGN-E340947 [cTOF-5-I12]">
      <seq>tcatccatagcagagacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacatacataagttgtaacttgtaagtatgaactatgtctagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="6900" stop="4582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6598" g_stop="6341" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="273" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4882" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="637" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E340947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6598" e_stop="6341"/>
          <exon e_start="5245" e_stop="4882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAGTTC</genome_strand>
        <mrna_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308527" ref_strand="+" ref_description="SGN-E308527 [cLEY-21-N7]">
      <seq>ctcgtgccgaattcggcacgaggatccatagcagagacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacatacataagttgtaacttgtaagtatgaactatgtctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="6900" stop="4585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6598" g_stop="6341" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="294" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4885" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="655" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E308527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6598" e_stop="6341"/>
          <exon e_start="5245" e_stop="4885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAG</genome_strand>
        <mrna_strand>ACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318688" ref_strand="+" ref_description="SGN-E318688 [cTOB-9-E6]">
      <seq>atgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtgagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtgtcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaaggtaagctctgtgcttagatgtaaacttgattttcttcaactgatgctatttggtattttgaacactaatatttgtggttccactagttagtcaacttggcattaaactagctgtgttacataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="6890" stop="4619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6590" g_stop="6341" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4919" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="577" r_length="327" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E318688" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6590" e_stop="6341"/>
          <exon e_start="5245" e_stop="4919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</genome_strand>
        <mrna_strand>ATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTGAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTGTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGGTAAGCTCTGTGCTTAGATGTAAACTTGATTTTCTTCAACTGATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346024" ref_strand="+" ref_description="SGN-E346024 [cTOF-24-I14]">
      <seq>agacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgcctatttggtattttgaacactaatattttgtggttccactagttagtcaacttggcattaaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="6900" stop="4634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6600" g_stop="6341" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4934" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="574" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="588"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E346024" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6600" e_stop="6341"/>
          <exon e_start="5245" e_stop="4934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATG-CTATTTGGTATTTTGAACACTAATA-TTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTA</genome_strand>
        <mrna_strand>AGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCCTATTTGGTATTTTGAACACTAATATTTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309277" ref_strand="+" ref_description="SGN-E309277 [cLEY-22-B13]">
      <seq>agagacatggacatgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcatgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttagggtttcatcaacagaagttaagctctgtgcttagatgtaaacttgtttttcttcaacttatgctatttggtattttgaacactaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="6900" stop="4670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6602" g_stop="6341" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4970" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="538" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E309277" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6602" e_stop="6341"/>
          <exon e_start="5245" e_stop="4970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTT</genome_strand>
        <mrna_strand>AGAGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341807" ref_strand="+" ref_description="SGN-E341807 [cTOF-9-K12]">
      <seq>cgtcaaatcctgccgtctttgtcaatgctgagttcctcaaggagcactgtaggacggaaggttcgaacagtggttcaggttatgcaatctgatggtgataaaagtcattggaaaatccacggatgaaaaagaattagttgtgaaaggaaatccacctaatgctctttcaacttttgttgaagtaattggtatagctgacactatccagtctattgaagcagaaatttggaccaattttggtgatacatttgatgttaatagctatgacaaggtgtgcagactagcaaatggtgacagtaagcacttgtttatctgagaaatgatttataaaagaggacatatatcctcttatttctgctgcattgttccagagtttcaatgtattataagtagtttgaagtactcctgaaaactttggattttcagcttctatttaggggtttcatcaaccagagttaagctctgtgcttagatgtaaacttgtttttccttcaacttatccctatttggtatttttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="6888" stop="4673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6589" g_stop="6341" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5245" g_stop="4984" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="516" r_length="265" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="531"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E341807" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6589" e_stop="6341"/>
          <exon e_start="5245" e_stop="4984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCA-TGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGAT-AAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTGGTATGTCTTGCTTATGTTATTCATATATATACACTTGGCTTCTCCTATATCCGTTAATGCATTTGAATGTCAATTTGTACCAAATTTGTTTCACTGGCAATCAAATCCATGATTTTATTACTTGTTGTTTCTTTTGCTTCATTTACGTCTTTTTTGTCGTTTTGCTACTGTTCTTCTCCTTTATCTTTAGCATTATTTTCTCATTACTGTATTTTCTTCCATACTTGAGTTTGATATGTTATACTTGAACCGAGGGTCTATCACAAATAGTCACTCTATCTTCACAAGGTAGTAAGACTATATACACACCACCCTCCCCAAACTCCACTCGTGGAATTACACTGGGTTTGTTATTGTTGTTTTGCCCTTCTTTATGTCTTGTTCTGCGTATTTTTTCAAGGTCATTTTGTAAGTTGCGAATATAGAACTGCCTAAGGCCAATGAACCATATAGTCTTCATACTCATCACTGAAAAGGAAAAGGATGGTGTTCTTTGATAAAGTTCATAACCCTATAATTGATGATAACACTATGAATATGCAAACTTTATGGTTATCATCTACCAGAAACCTTAAGATCTATAGATATTCAACAGATGAGTGGGTTGTAGTCAATTAAGTGAACTGAATAATAGATTGTAGAGTTAAACATTATTGTCCTTCCCAACTCGGCCAATTTTATCTTCATTCCTTCACTTCTCTGAAATGTTTCTATACAAATGGTGACTGGGGAGGGTAAAGTTTACGATGTCCCTGTTCTATATGAAATTCAAGGATTAAAACAAAGGGAGATTTGGTTAGTGCGACTTTTCAGGTTATGATATCTATATTTACGGTAGTGTTCTACTTTGTTTACAATCCTATCATCATGCGATAGCTGTTTTTATACTTGCTCTGTCAAACATATTCAAGACCAATGTAGTCATCAATTATGTCCAAACTGCATTTATTTTTGACACATTGTATAAGCATTTCATGTTGCTTGTTAAACTTCTACTCATGACTTAAGGTTTATAGAAACTTTATGATGTGTATCTAGTGCTTGTCTCTTGATGATATATACTTGCTAATCTACAAGTTCTTCAATATGTGACAGATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTA-GGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTT-CTTCAACTTAT-GCTATTTGGTATTTT</genome_strand>
        <mrna_strand>CGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCACTGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGGTTTCATCAACCAGAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCCTTCAACTTATCCCTATTTGGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689281" ref_strand="+" ref_description="SGN-E689281 [t3_tus_80_O02]">
      <seq>agtttgtgtgtttactggttttgattttgaacccttcagttttgttttaataatgagtttttgtttcccggtgtctacccataattttctgtgtagagatttccctgatttacatttaatagtgtatcaagttgctacacaaaattgtgataaatagatcttttcttttttttaatgatttgggttgttacactttgttcatttgtgtaattggttttgtactttctgtaattatgggtaatgaaaaatcaaggttcttggaagtgttttgcaattttttttaaaaaaaaaatccttgaaaaaaatgcagtcaatggtaaattatgattcccaaatgatatctatgtcattctttgaacaatggaatctattgaggtaatggtttgatgtaaaatatgatgttagaagttttagcgggttagaattgtttaatcttgtttagtagatgcgtactgtgcatgttcgatgatggatgtgattgtttttatataagcaactgttaatagtattgtcgtattctgattttcgatggtgtaagaaactttaactcacaggcttctgatttgttgtcttttaaagttttaattgcaagagcttgtgaaagtgtataaggtttactatttgtttactagagctcttgaaccagaagcttaatattggaaagagatggaaaggtttttaagcatttatgagttctgaatttgattttcttcattggtacagctagtcgttgaaatgcttgtagatgtgatatatcactcaaaatcctaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="7836" stop="6463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7536" g_stop="6763" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E689281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7536" e_stop="6763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</genome_strand>
        <mrna_strand>AGTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325549" ref_strand="+" ref_description="SGN-E325549 [cTOC-15-C10]">
      <seq>gtttgtgtgtttactggttttgattttgaacccttcagttttgttttaataatgagtttttgtttcccggtgtctacccataattttctgtgtagagatttccctgatttacatttaatagtgtatcaagttgctacacaaaattgtgataaatagatcttttcttttttttaatgatttgggttgttacactttgttcatttgtgtaattggttttgtactttctgtaattatgggtaatgaaaaatcaaggttcttggaagtgttttgcaattttttttaaaaaaaaaatccttgaaaaaaatgcagtcaatggtaaattatgattcccaaatgatatctatgtcattctttgaacaatggaatctattgaggtaatggtttgatgtaaaatatgatgttagaagttttagcgggttagaattgtttaatcttgtttagtagatgcgtactgtgcatgttcgatgatggatgtgattgtttttatataagcaactgttaatagtattgtcgtattctgattttcgatggtgtaagaaactttaactcacaggcttctgattttgtgtcttttaagttttaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="7835" stop="6647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7535" g_stop="6947" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E325549" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7535" e_stop="6947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCA</genome_strand>
        <mrna_strand>GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTTGTGTCTTTT-AAGTTTTAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213783" ref_strand="+" ref_description="SGN-E213783 [cLEC-76-M5]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="17342" stop="18233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17642" g_stop="17933" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E213783" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17642" e_stop="17933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207313" ref_strand="+" ref_description="SGN-E207313 [cLEC-30-L1]">
      <seq>gcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaagtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgccggctaagggcgttgacaagacaacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="17343" stop="18117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17643" g_stop="17817" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E207313" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17643" e_stop="17817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGAC</genome_strand>
        <mrna_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAAGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCCGGCTAAGGGCGTTGACAAGACAACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745616" ref_strand="+" ref_description="SGN-E745616 [GI|47105254]">
      <seq>gaatgattactgattagccttttagaagatcggaaaaccctaaaaatggctgatcgagctctctgttcactctcatttgactgataaatctgcggatgcgaggtaatctcactatatatttgtaatcagtactgttttctgcttttaaatccttcaaaaaatggatgatttgatgcaaaaatcactgaaaacccccgattttttagctgtatttactaacagtacaagtgaaggaattgatagaattagctatttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcttgaaaaagttgagttatcaaacgagcatttgacgagttgcttgttctcaagactagagaaactggtattggatggttgtacttttggaactatgactatgcttgatattgtttcaacgtctctggtttatgtgtctctactgaactatgtcaataacgtagaagcttacaacaattgtatcgtcaagatttcttgcccgaatctcaaggtcttgaaatatggtgctccattggcaaaggatatgatcatagagaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgttggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaagaatgcacaagtattagaagaactgataattgtttgggatagctgtagtggcatatcagaagaggcaatagaggaggtttccaactttcctagagcttcttcacatgttgttgtctcatttcttaatttcaaacccaaatcaagatctcgttaccgggacaattcagtttaaaagaggttctgattgtgagacgctatgttgcttggacttggactctccaaaaatgttgtactacttttggaaggtccgacatacatttgaagtgtccaagtaacataggttagaagtaccctttttgggaactagtgcatgagcaagcacatgaagccttaacgaatttctactactgtttcgccttttcaaagagcactggacagacttcaatgaagcatatttgactccggacaaagaagcattcaacttgtcgacagatgttacatgcgtatacaagatttaggaagtatcagtcatctctttctgcactatatggttgttgttgacctctgaaacgtgttttattatgttttcggactcgcgtaggtcatgccatacacagttaaagatgcatatgaatgctttaatcatgaagaagatctggatgtccctgcaagtattgatgtttttggtgtatttcaactccaaattactcctcccaactataagctagatgtttgtgtaacttatttaggttgatgaacaacttaagtcatgtaaattacttgatctcttttgtaacttttgcatcttcatgatgtttttctcaataaaacttacttatttcatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="21454" stop="1847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21155" g_stop="18927" g_length="2229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2229" r_length="2229" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E745616" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21155" e_stop="18927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGATACT</genome_strand>
        <mrna_strand>GAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E397827" ref_strand="+" ref_description="SGN-E397827 [TUS-24-L21](-)">
      <seq>gttaaagaggggtatgaatgctttaatcgtgaggaagatttggatgtccctgcaagtattgatgtttttggtgtatttcaactccaaattactcctcccaactataagctagatgtttgtgtaacttatttaggttgatgaacaacttaagtcatgtaaattacttgatctcttttgtaacttttgcatcttcatgatgtttttctcaataaaacttacttatttcatcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="19471" stop="18635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19171" g_stop="18930" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E397827" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19171" e_stop="18930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGAT</genome_strand>
        <mrna_strand>GTTAAAGAGGGGTATGAATGCTTTAATCGTGAGGAAGATTTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244981" ref_strand="+" ref_description="SGN-E244981 [cLEF-2-J11]">
      <seq>taaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaagaatgcacaagtattagaagaactgataattgtttgggatagctgtagtggcatatcagaagaggcaatagaggaggtttccaactttcctagagcttcttcacatgttgttgtctcatttcttaatttcaaacccaaatcaagatctcgttaccgggacaattcagtttaaaagaggttctgattgtgagacgctatgttgcttggacttggactcttcaaaaatgttgtactacttttggaaggtccgacatacatttgaagtgtccaagtaacataggttagaagtaccctttttgggaactagtgcatgaacaagcacatgaagccttaacgaatttctactactgtttcgccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="20268" stop="19067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19968" g_stop="19366" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E244981" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19968" e_stop="19366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTC</genome_strand>
        <mrna_strand>TAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTTCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAACAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254305" ref_strand="+" ref_description="SGN-E254305 [cLEG-27-N23]">
      <seq>tggcaaaggatatgatcatagagaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgttggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaaagcgttttgtgcctggagtctcatctaaagttgattcagttggctggtttcaaaaatgaagataaagagatagagctactgaggtttttcctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="20496" stop="19427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20196" g_stop="19727" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E254305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20196" e_stop="19727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAG</genome_strand>
        <mrna_strand>TGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239931" ref_strand="+" ref_description="SGN-E239931 [cLED-29-I20]">
      <seq>gaatctcttgtctatagaagttgttcacatcttatttttttattcagacgatgtaataaaagaaattggaatgcgtttgcataaggtgttcaagaatgtcgcttctacatcagctttgaaattatgcaaaggttctgttgatggtttgtatagtgtatttcatggagtaagaaacttcccggtcacgttttataagctcaagtccttaaaattggcagtggcaattgacgaatcttgcatggaaatcatgatgctattgctcaagcattctcctaatttagaggttcttaatttgttttctgatgagaattacggttgggatgaaaactggaagttccatgatcctagtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="20474" stop="19523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20174" g_stop="19823" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E239931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20174" e_stop="19823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAA</genome_strand>
        <mrna_strand>GAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGATGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391824" ref_strand="+" ref_description="SGN-E391824 [TUS-24-L21]">
      <seq>atttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcatgaaaaagttgagttatcaaacgagcatttgacgagttgcttgttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="21204" stop="20078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20904" g_stop="20378" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E391824" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20904" e_stop="20378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCA</genome_strand>
        <mrna_strand>ATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCATGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246727" ref_strand="+" ref_description="SGN-E246727 [cLEF-45-H3]">
      <seq>ttgccggatgatatactgcacaatatactttcatatctgtacatctttgatgttgttcagctaagcattttatcgaaaagatggaactatatatggaggacaatgccttacttgaattttgatattaatagctttggttgtgaaaggattgataggctttgggatatgggtatggctgagaaattcaaagattttatcaattgggtgttgattaaccgatgtggggatagccttgtttgttttaagctttgttgtggggatatttttggtaaaagggctatttttcgatgggttcgtgttgtgacagctcgaaatgttcaagaactcgtgttagatttttgtcctgctgagccatttgagttgccatattgtgttgtgacttgtgaatccttgcgagttttgaaattacggcttgatgggtctgtacttaagttgtctaatcattttggatttcatcagcttaaatttcttcatcttgaaaaagttgagttatcaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="21202" stop="20104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20902" g_stop="20404" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E246727" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20902" e_stop="20404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACG</genome_strand>
        <mrna_strand>TTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342207" ref_strand="+" ref_description="SGN-E342207 [cTOF-10-J24]">
      <seq>gggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaccaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggggccaagaactgaagtataagactagtatgtcaaacaaatttttgaatctttgactagctatctatgagtatcaactagaaaaaggaattgtgagcaaaaaaggaaatgatcaactagaaaagggaagttcttgacaagataatatatagtacattgtatgtactctcaactatatagttttgtccctcttcttgtgtaactattgtcttcttgatatatcttattatcttgtaatcttgaaaatttcattgtttttcccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="25431" stop="23693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25131" g_stop="25052" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24941" g_stop="24816" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="206" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24348" g_stop="23984" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="571" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E342207" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25131" e_stop="25052"/>
          <exon e_start="24941" e_stop="24816"/>
          <exon e_start="24348" e_stop="23984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</genome_strand>
        <mrna_strand>GGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745524" ref_strand="+" ref_description="SGN-E745524 [GI|47105930]">
      <seq>aatggataaagcataaaagaagaagaaaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaccaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggggccaagaactgaagtataagactagtatgtcaaacaaatttttgaatctttgactagctatctatgagtatcaactagaaaaaggaattgtgagcaaaaaaggaaatgatcaactagaaaagggaagttcttgacaagataatatatagtacattgtatgtactctcaactatatagttttgtccctcttcttgtgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31419" stop="23754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31119" g_stop="30876" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="374" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="442" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="544" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="697" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28515" i_stop="28065" i_length="451">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="823" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="926" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="927" r_stop="1027" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1028" r_stop="1165" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1166" r_stop="1309" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1310" r_stop="1385" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1386" r_stop="1471" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="24941" g_stop="24816" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1472" r_stop="1597" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="24348" g_stop="24058" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1598" r_stop="1888" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1890" polyA_stop="1904"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E745524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1888</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31119" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24816"/>
          <exon e_start="24348" e_stop="24058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATAAAGCATAAAAGAAGAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGT</genome_strand>
        <mrna_strand>AATGGATAAAGCATAAAAGAAGAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727289" ref_strand="+" ref_description="SGN-E727289 [LA14BB02]">
      <seq>gatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactanaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaacaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28141" stop="23951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27841" g_stop="27757" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="186" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="324" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="468" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="544" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="630" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24941" g_stop="24816" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="756" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.868" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24348" g_stop="24251" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="854" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E727289" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27841" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24816"/>
          <exon e_start="24348" e_stop="24251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGC</genome_strand>
        <mrna_strand>GATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTANAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAAACAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700344" ref_strand="+" ref_description="SGN-E700344 [FA12DD10]">
      <seq>gggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaacagcaggctcctcccggtactgcaaggaggaagcgaaggtcagaaccaaggaaacaatttgcagactcgggatcagctaggcctagccctcgtggtttcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28119" stop="23953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27819" g_stop="27757" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="164" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="302" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="446" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="522" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="608" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24941" g_stop="24816" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="734" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24348" g_stop="24253" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="830" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E700344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27819" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24816"/>
          <exon e_start="24348" e_stop="24253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAGGTGCCTATCTTGTCTAAATTTTTGGCTTAATTACTTGTTATCAAATTAGAATGTGTGGATATAGCAGTCAGTTCCAATTTTGAGCTCCTTACCTCCTTACTATGCTGTAATCATTTCTTCTTACATATTAGTCGTGGCGCGCACAAACAGGCCCCAAACACCATACTTATCGGGGAAAAAAAGAGTTCTTACATAGTGTTTCTTTTCTCTTCCAATATGCCTTCAAGATTGTAAATTCCACTTGTTCGAGGATATGCTAATACATCTGTTCGATCTAATACACATTTCTATTGTATGAGATGTAGAAACCTATTCTACTATGCATTTGTTTTTTTGACTGGACTTATACTCGAAAAGTGCATGTTTGTCATGTATTCTTAGATTTGCACTTCTGTTATCTTATCATTCATTAGCTCTAACTTAAGCTGATGGATTCGAATGGTCATCTTGTTCCCTTCTTTCTTCAGGCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGG</genome_strand>
        <mrna_strand>GGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265643" ref_strand="+" ref_description="SGN-E265643 [cLEI-14-L19]">
      <seq>tatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="26355" stop="24520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26055" g_stop="25981" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="219" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="295" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="381" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24941" g_stop="24820" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="503" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E265643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26055" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</genome_strand>
        <mrna_strand>TATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318865" ref_strand="+" ref_description="SGN-E318865 [cTOB-11-E23]">
      <seq>ttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatggaaggtggttcgattcctgcactgagtaatctagaggaggcactaaaatctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="26328" stop="24520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26028" g_stop="25981" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="192" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="268" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="354" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24941" g_stop="24820" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="476" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E318865" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26028" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</genome_strand>
        <mrna_strand>TTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729389" ref_strand="+" ref_description="SGN-E729389 [LA20DF07]">
      <seq>gaaacgggtactgaaccccacanaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactgagcaacaggtgagtcaacttgttgctcaactttttcaaatgcgtgtacgtatgaagaatttgatgggcgttatgggaggtggttcgattcctgcactgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28124" stop="24550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27824" g_stop="27757" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="169" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="307" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="451" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="527" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25137" g_stop="25052" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="613" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="24941" g_stop="24850" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="705" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E729389" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27824" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25052"/>
          <exon e_start="24941" e_stop="24850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAGGTAAATATCTGTGTGGAGTACTGATGCTAATATGCCATAAAACATAATTCTTTGTCGAAGAATGTTTGGTACTCCTTGCATGCACCTACATAACTTATTGCAATTCGTAGGTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAG</genome_strand>
        <mrna_strand>GAAACGGGTACTGAACCCCACANAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG..............................................................................................................GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGGAGGTGGTTCGATTCCTGCACTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726172" ref_strand="+" ref_description="SGN-E726172 [LA11AB07]">
      <seq>gtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaagatttgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactcgggcagttgctaggatgggtaccatgtcgcgtgttattggtatgatgcctggcatgggaaaggttactcctgcacaaattcgagaggcagagaagagcttaaagataatggagtcaatgatagatgtcatgacaccagaggagagggagcaaccagaattgttagcagaatctcctgctagaaggaaacgtatcgctcaagaatctgggaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28277" stop="24760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27977" g_stop="27939" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="142" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="243" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="381" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25891" g_stop="25748" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="525" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25482" g_stop="25407" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="601" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269">
            <donor d_prob="0.881" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25137" g_stop="25060" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="679" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E726172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27977" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25748"/>
          <exon e_start="25482" e_stop="25407"/>
          <exon e_start="25137" e_stop="25060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAGGTAAAATACCCAGTTCTTGTTAAATCTATTTCTCCTTTCCATGTCGTAATTATTGTATGGTGCAATTCATGTTTTACTAGCTATCATACATACTTTAACTTGCTACAAATGGAACGACCGATTTCAGGTCAAACAATCAAACAATGTTATCAATTCTTAAAAAAAAAAGACGATCAAACGATCAAACCTTATATTAGCTATACTCCTTTGTTTTTATATAATTGATGAAATGGGACCAAATTCCTTCTTGTTCATGCATAAACAGGTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAGGTTATATATCTTACTTCGAGGTTTCTAAGGACACGTGTTACCTAAACATGCATACTTCATCTGGTTAAATTTGTTTCTTATTTTCCTTTTTAGTCCGTTCTTTTTTTGGCAACTCTGAACTTTCCACGTAGAATGTTTAAGACTACAAGATTAAAGGACATTTTGATACATTCTACGTATCTTTAGTTGAAAACCAGAATCAAATTGAAAAGGAAGGAGTACTAGTGCTGCTAGCTCAATTCACATTTCATTTTCATCTTTTTTCTCAGAGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTG</genome_strand>
        <mrna_strand>GTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG.........................................................................................................................................................................................................................................................................GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG.............................................................................................................................................................................................................................................................................AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262707" ref_strand="+" ref_description="SGN-E262707 [cLEG-63-C14]">
      <seq>tacaccttaacaatctttatctatatatcttctttacgagtacacagaatatctaaacacaacttcatccattctcatgttcactgataagtgggggaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaggaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttangaatgggagatgttctatcgtttgttgagaaagcccaagaagttatgcgtcaagaagatgctgaaagattgcagaagaagatcatgagtgcaaaatttgatttcaatgacttcctgaagcaaactccggcagttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28466" stop="25498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28166" g_stop="27939" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="331" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="432" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="570" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25891" g_stop="25798" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="664" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E262707" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28166" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTA</genome_strand>
        <mrna_strand>TACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTANGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAAGATTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCCGGCAGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266514" ref_strand="+" ref_description="SGN-E266514 [cLEI-5-G22]">
      <seq>caacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtgtcaaggaggtatcaagaaagccaatcaagctcgtaggaaggggtgaacgtatggaggaccttgaacctttctatcctgaccgcatggctggacgtattttaggaatgggagatgttctatcgtttgtcgagaaagcccaagaagttatgcgtcaagaagatgctgaagatctgcagaagaagatcatgagtgcaaaatttgatttcaatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28560" stop="25526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28260" g_stop="28237" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="150" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="253" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26840" g_stop="26740" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="354" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26118" g_stop="25981" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="492" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25891" g_stop="25826" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="558" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E266514" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28260" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26740"/>
          <exon e_start="26118" e_stop="25981"/>
          <exon e_start="25891" e_stop="25826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAGGTGGGGTCTTTTTACTACACGACACATACATTCGTTTTTTCCTTGTTCTAAGTTTAACCTTGCAGTTTACTTTGCTTCAACTTCTCTTGATTAGCAAAGTCAACATTTCTACTTTTGAACTTAGAGCAGCAAAGATGAAGGAGAGTTAATGATGGAAGTAGATGATTATAAATATCCAAAAGCTTTTCTTCCTTGAAGGGATCATGCGGCGAAACAAATACTAAAACGTAAAGAGTGATTGGACCACAAACTTCAGATTTCCTCTATGTTCAACATGTCTTTTGCGTATTATCTTGGAAGAAATTTACTTTTGTCAAGGTTTAAACTGAATGGAATAGATTTGAAGCCAATAGGCAATTGATGATATCTGTTTAAGTGGTTGTGTCAAATGTTGCCAATATGGGTCACAAGTTACAACAGAACAACAACCCAGTGTAGTCCGACATGTGTGTAATGGGGAGGGGAGGATGTAAGCAGATCTTACTCCTACCTTTTATGGGGTAGAGATTGTACACGAATCATATGTATAGACAAAAAAAATCACTGATTGCTCTTTAACGGTCAGGTTTTTGGTTAAATGAACTAAGATTGTGCATCACAATTATATGTTCACTACCACAGGTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTTGTAAGTGGCAAACAAGTATTAATGCTCCTATTTTTTTTCTTTTTACTTGATTCAAGTAGTTTCATTTGACTCCTTATAAATGATTTTAGATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGAC</genome_strand>
        <mrna_strand>CAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTCGAGAAAGCCCAAGAAGTT.........................................................................................ATGCGTCAAGAAGATGCTGAAGATCTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246312" ref_strand="+" ref_description="SGN-E246312 [cLEF-40-N15]">
      <seq>cggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagcagctttaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28879" stop="26448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28579" g_stop="28516" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="268" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="371" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26840" g_stop="26748" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="464" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E246312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28579" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTG</genome_strand>
        <mrna_strand>CGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332839" ref_strand="+" ref_description="SGN-E332839 [cTOD-18-J16]">
      <seq>ttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaatttggattactggtgccatcttgacgaagctagatggagattctaggggtggagcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="29221" stop="26453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28999" g_stop="28986" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="116" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="269" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="347" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="473" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="576" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26840" g_stop="26753" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="664" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E332839" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28999" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTT</genome_strand>
        <mrna_strand>TTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTTGGATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250623" ref_strand="+" ref_description="SGN-E250623 [cLEG-7-M2]">
      <seq>ttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatcttgacgaagctagatggagattctaggggtggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="29149" stop="26458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28849" g_stop="28811" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="192" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="270" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="396" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="499" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26840" g_stop="26758" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="582" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E250623" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28849" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCA</genome_strand>
        <mrna_strand>TTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266766" ref_strand="+" ref_description="SGN-E266766 [cLEI-7-C24]">
      <seq>agttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaaaaagctgcagctttggtcacaacattcaatctcgaaattggaattactggtgccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28608" stop="26493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28308" g_stop="28237" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="198" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="301" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26840" g_stop="26793" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="349" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E266766" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28308" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCT</genome_strand>
        <mrna_strand>AGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAAAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207182" ref_strand="+" ref_description="SGN-E207182 [cLEC-30-M10]">
      <seq>tgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacagtgggggaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaacgggtactgaaccccacagaggttttacttgttgtggatgcaatgactggccaagaagctgcagctttggtcacaacattcaatctcgaaattggaattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28864" stop="26503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28564" g_stop="28516" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28236" i_stop="28076" i_length="161">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.515" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28075" g_stop="27939" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="264" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27859" g_stop="27757" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="367" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26840" g_stop="26803" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="405" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E207182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28564" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28075" e_stop="27939"/>
          <exon e_start="27859" e_stop="27757"/>
          <exon e_start="26840" e_stop="26803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAGGTACTTCTACACTCATAAAACATGCAAATGATCTATTACATGCCACAGACAGTTCGCTTCTTGTGAAATATGGCTTTTGACTAGCATGGTCATATCACTTTTCACATGCTTTGATCTACAGCAAGGTCGCACTAATATTTATGCTCTGTGGTTGATCGTTGAGGAACATCTTTTTTTTCTTAACCATGGACATTCACATATTGCCAAAGAAGTGTATCTTGCCATGCATACTTTTGACTTACCACACTTGCATTTTCATGTTCCAAGAACTAACCGTCTGATACGAAAAACTTTCCTTAACAATCCAGGCCATTCTGTTATCTGAGGTCTGCTTCTCACAGAGAGAGCAAAATATCTGTTGTTTGTGTAATGTTGCCACCGAGCGTTTTTCTCAAGAGAACGTTATATTGCTTCTCATCGAAGCTTGGAGACTTATAGCACAGCTGTATATGACAGTTAATTTCTTTCTTGTGCTTGTCTTGTACGAATATAAGTTATTTTTGGGACTTCATTACATAAATATGGATGTTATCTTTGATAATCTGAAGCTGTTTAACTATTTTAATACTCCCTCTATTCACGCGACATGCTTGGTTGATATGGAGTTTAAGGAATTAGTTTCATTTACTTGAAACTTTTTTAGTCAGAAAAAAATAAACGGAATTGGTTTTTTGAGGTTAATGGAGAGAGGCATTCCATATCTGAGTTGTTAAATGAATCTGAACTCTTGAAATTTGTTACTAGATAGTGCATTAAAATTCTGTAACATCTCAAAACAGAAATCATAGTACTGCACTTTCATTGAGTTATTACTGACACAAGGACATAATTTCTGCCCTATACCAATCATTTCATGTTGAAAACAGAAAATTCCGATTTGTTTTCTCTCTTATCGTTCACATTGATGAAATTGTAGCTTTGGTCACAACATTCAATCTCGAAATTGGAATTACT</genome_strand>
        <mrna_strand>TGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG.................................................................................................................................................................TGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553686" ref_strand="+" ref_description="SGN-E553686 [cTSC-1-O16]">
      <seq>gtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagatagataaaactatgatggatgaattaaaagacgtgaaaacggtactgaaccccacagaggttttacttgttgtggatgcaatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31360" stop="27472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31060" g_stop="30876" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="315" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="383" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="485" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="638" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="716" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="842" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27859" g_stop="27772" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="930" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E553686" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>930</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31060" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
          <exon e_start="27859" e_stop="27772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAGGTCATATCATCTTAGTTTTTGAATTCCACTATAACTTTTTCTAGTAGTTGTATTTAAACCTTTCTCTTAGTTCTTGTAGATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTG</genome_strand>
        <mrna_strand>GTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG...............................................................................ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAAACGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256609" ref_strand="+" ref_description="SGN-E256609 [cLEG-38-B2]">
      <seq>tagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaagaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagcccgacaaggattacaagaggccaaaaagaagaatgtagatgtagtcataatggatacagctggaagacttcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31038" stop="27637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30738" g_stop="30671" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="136" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="238" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="391" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="469" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28064" g_stop="27939" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="595" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E256609" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30738" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="27939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG</genome_strand>
        <mrna_strand>TAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAAGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341894" ref_strand="+" ref_description="SGN-E341894 [cTOF-9-G5]">
      <seq>tatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgatttggtggagacgtgtacagaccctgctgctattgaccaatcttgttattttgggtaaacaagttgatgtacctgtttatgcagcaggaacagatgtaaaacctgcagaaatagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="29322" stop="27710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29022" g_stop="28986" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="139" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="292" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="373" r_length="81" r_score="0.897"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28064" g_stop="28010" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="428" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E341894" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29022" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="28010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGA-TTGCTGGAGACGTGTACAGA-CCTGCTGCTATTGACCAA-CTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCC</genome_strand>
        <mrna_strand>TATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTTGGTGGAGACGTGTACAGACCCTGCTGCTATTGACCAATCTTGTTATTTTGGGTAAACAA............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339009" ref_strand="+" ref_description="SGN-E339009 [cTOF-6-I22]">
      <seq>ttgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggggaagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgntattttgggtaaacaggttgatgtacctgtttatgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31362" stop="27742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31062" g_stop="30876" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="317" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="385" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="487" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="640" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="718" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28064" g_stop="28042" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="741" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E339009" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31062" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="28042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGC</genome_strand>
        <mrna_strand>TTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGGGAAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGNTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTGTTTATGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332256" ref_strand="+" ref_description="SGN-E332256 [cTOD-17-G6]">
      <seq>atcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacangttgatgtacctgtttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31266" stop="27745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30966" g_stop="30876" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="221" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="289" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="391" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="544" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="622" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28064" g_stop="28045" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="642" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E332256" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30966" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="28045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGC</genome_strand>
        <mrna_strand>ATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAN............................................................................................................................................................................GTTGATGTACCTGTTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250723" ref_strand="+" ref_description="SGN-E250723 [cLEG-7-M14]">
      <seq>gaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgtcgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattgaccaacttgttattttgggtaaacaggttgatgtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="28923" stop="27752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28623" g_stop="28516" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28314" g_stop="28237" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="186" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28064" g_stop="28052" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="199" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E250723" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28623" e_stop="28516"/>
          <exon e_start="28314" e_stop="28237"/>
          <exon e_start="28064" e_stop="28052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAGGTGTGCCATGTCACATTAGCAACAATAAGATTATATATCATTTTATTTTAGATGCTTCTTTCTGTTCTTCTACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTG</genome_strand>
        <mrna_strand>GAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTCGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG............................................................................................................................................................................GTTGATGTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343935" ref_strand="+" ref_description="SGN-E343935 [cTOF-12-A19]">
      <seq>ccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaaagaagcagggtaagagttgcatgctgattgctggagacgtgtacagacctgctgctattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31333" stop="27962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31033" g_stop="30876" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="288" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="356" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="458" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28516" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="611" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201">
            <donor d_prob="0.771" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28314" g_stop="28262" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="664" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E343935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31033" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28516"/>
          <exon e_start="28314" e_stop="28262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAGGTGGACTTCCAAACTTCACCTTCTCCCTTTCCTGACCTTCCTTTACTTTCTCTCACTCCCCTCTCTCTTGCTCATTCTATTGCAATTTACATATATGGTCGTAGAACCTGCATTTCTCCAAGTGCCTTCTAATATTAGCATTTTCCCTTTTTCTCATTCTATTGTCAAACCATTTATGGGCACTGGTGGCATGGTCTGCAGGGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGA</genome_strand>
        <mrna_strand>CCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG.........................................................................................................................................................................................................GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706332" ref_strand="+" ref_description="SGN-E706332 [FA29CF11]">
      <seq>cacgaaaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaaaggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattccaggtgtaaaaccacatcaccaactacttaagactgtacgtgacgagcttgtgaaacctgatgggtggagaggtttctgaactggtttttgctaaatcctaagcccacccgtaatactattggccggtctacaaggtgttgggaagacaactgttagtgcaaagttagctttatatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31397" stop="28224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31098" g_stop="30876" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="353" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="421" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="523" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28524" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="671" r_length="148" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E706332" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31098" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAA-CTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAAT-CTAAGCCCA-CCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAA</genome_strand>
        <mrna_strand>CACGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAAGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCCAGGTGTAAAACCACATCACCAACTACTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACCTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCCTAAGCCCACCCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211661" ref_strand="+" ref_description="SGN-E211661 [cLEC-67-D8]">
      <seq>aaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtngagaggtttctgaactggtttttgctaaatctaagcccaccgtaatactattggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31393" stop="28278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31093" g_stop="30876" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="348" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="416" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="518" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28578" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="609" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E211661" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31093" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCG</genome_strand>
        <mrna_strand>AAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTNGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267086" ref_strand="+" ref_description="SGN-E267086 [cLEI-4-O14]">
      <seq>tttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgatgggtggagaggtttctgaactggtttttgctaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31352" stop="28303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31052" g_stop="30876" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="307" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="375" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="477" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28603" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="543" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E267086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31052" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCT</genome_strand>
        <mrna_strand>TTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266144" ref_strand="+" ref_description="SGN-E266144 [cLEI-6-D14]">
      <seq>aaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31391" stop="28340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31091" g_stop="30876" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="346" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="414" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="516" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28640" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="545" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E266144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31091" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGAT</genome_strand>
        <mrna_strand>AAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268785" ref_strand="+" ref_description="SGN-E268785 [cLEM-16-L6]">
      <seq>aaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgattcgaggtgtaaaaccagatcagcaactagttaagactgtacgtgacgagcttgtgaaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31391" stop="28340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31091" g_stop="30876" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="346" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="414" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28811" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="516" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28668" g_stop="28640" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="545" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E268785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31091" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28811"/>
          <exon e_start="28668" e_stop="28640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAGGTATGTATTTTTGAACTGATGACTCTGAACAATACACATTTGTACATTGATAACAGACGGTCACCCTTCTGTTGTTAATTGCTTGCACAATTTGCTATCAGCTCGATCTGAACATTTTCTTTGTCTCATTTGGTTGGTGTAGACTGTACGTGACGAGCTTGTGAAACTGAT</genome_strand>
        <mrna_strand>AAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG..............................................................................................................................................ACTGTACGTGACGAGCTTGTGAAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724404" ref_strand="+" ref_description="SGN-E724404 [FC24AA11]">
      <seq>aaaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcgaattggaaaatgcttggaacatactcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgaggaacatcaggagggttcttttaaaagctgatgttagtctcccagttgtcaaaaggtttgttcagtctgttagtgaaaaagccgttggcactggtttgattcgaggtgtaaaaccaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31394" stop="28524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31094" g_stop="30876" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="349" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="417" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.920" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28824" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="506" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E724404" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31094" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCA</genome_strand>
        <mrna_strand>AAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGAATTGGAAAATGCTTGGAACATACTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGAACATCAGGAGGGTTCTTTTAAAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAAAAGGTTTGTTCAGTCTGTTAGTGAAAAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318539" ref_strand="+" ref_description="SGN-E318539 [cTOB-10-F12]">
      <seq>aagaaaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcagaaggtttgttcagtctgttagtgaagaagccgttggcactggtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31397" stop="28545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31097" g_stop="30876" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="352" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="420" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28845" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="488" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E318539" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31097" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGAT</genome_strand>
        <mrna_strand>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295369" ref_strand="+" ref_description="SGN-E295369 [cLET-23-I16]">
      <seq>aagaaaaaagcttcaatttttgcttcttcttttgattgtttggtctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagaggttttgaccaaggaaaacatcgtggaacctatgagggacatcaggagggctcttttagaagctgatgttagtctcccagttgtcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31397" stop="28592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31097" g_stop="30876" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="352" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29053" g_stop="28986" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="420" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28912" g_stop="28892" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="441" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E295369" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31097" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29053" e_stop="28986"/>
          <exon e_start="28912" e_stop="28892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATATGTGGTTATATATAATGATAAAGTGGCTGTTGTTTGAATTCCTTGTGCCTCAGAGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGATGTATGTTGCTTACTGTTTCAACAACTAATCTCTATACATAAAATTTCGCCGCTTATTTAACTTTAATCGGCAGGTTAGTCTCCCAGTTGTCAGA</genome_strand>
        <mrna_strand>AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGGTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT.........................................................................GTTAGTCTCCCAGTTGTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735717" ref_strand="+" ref_description="SGN-E735717 [LC02CH12]">
      <seq>gaggggaaaaagcttcaatttttgcttcttcttttgattgtttgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaagggaaatgagtggagttattagagctgagatgtttgggcagctcactagcggattggaaaatgcttggaacaagctcaaaggagaagggtggatgatgagttgtcgtagatggtaatattgatccattcgaggaggtgccagatggggtataatgaattatacttcaagagaagaaaccgggaagatgtataattgattgttaaactccaatgaagtgtatggaaagggaaggggccttgctactataaggttttaaatgcaaagagtacaacatattaacaactatggcctatgggtcattggatttctataacagggatatacttctcctttttagttccatacattattgctggatattataaagttgtaggaataaattaattggagagtattttactgttaaaaatgtgacttgtctgccttgtccaaattcaaatttctaatcatattttctatatcctcaatctttcaaattttaaaggttgaaagtcttattgcccttgttactaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31395" stop="28806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31100" g_stop="30876" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="354" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30670" i_stop="29537" i_length="1134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29536" g_stop="29106" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="785" r_length="431" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E735717" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31100" e_stop="30876"/>
          <exon e_start="30800" e_stop="30671"/>
          <exon e_start="29536" e_stop="29106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAGGTAAAAGCAAAAAAAATACTCTTTTTTAAATTTAAAAATGAGCTAGTTTTATGTGAAAATTTGAAGTATGGGAGCTTGAATTGTTAATCTTGAGTAGGTACATGTTAGAGTGTGTTAGAGTCGCATGTTGGTTGGTTGGGAATGGACCGGTGGTCTGTTATGTGGACTTGGACGATCCTCTCTTCGTGAGCTAACGTTTTGAGGTTGAGTTAGGCGTAAGTGTCATATCTTTATATGCTATCGTAGCTACTTAGCTAGGTTCATACCTGTTTGGACTCCCGGTTTATGCTCTAGTTAGGCATGAGGTGTTAAAGTGGGTTATAGTCCCAAATCAGTTTATATGGATTGGGTAATCCTTCCGTCGTGAGCTAGTTTTTGGAGTTAGGCCCGGGTGTCATATCTGGACTGTTTTGAAAGGGAACTGAAAATCGATACCTTGGATAGGGATGATAGTTCAAAAATATGACTTCAAGAACAATGTCTTCTTGTTTTTTCATATTCAGGATAATATCTTAAGATAATTCATTAGTACATCAGAGGTGTTTATTTGATGTCATCACAATTTCAGTTAAAGTAAATGCCTTTGCTAAGTAAAGGCTGTGAGATAAGATAGGAGTGAACTAAAGCTTCTTCAAAATGTGGCATGTAGTCATCCAAGGGTCATATCAATCTTGGTGAATGAGTTCAGCAAGACTTACAAAAAAAAATATAAAAACCTGGAATCGATCCTTAAATAGGAATTAAGTCTCATTTTACAAGATTTTAACATGCTGAAATACAAAATAAACACAACCTGGAATAGATCCTTAATTAGGAATTACGTCTCATATCCAAGATTTTAACATACATCAGAGCTGAAAATGTATCAGTGAGGAGTTCCTTTATGGATGTTGAGGCTTCGGAGATAGAGTGGGACAGGAAATCCCAGTATTTTATGCCCAAGCCAATTGATTCTTGAAGTGGTAAGTAGTTGAGCTAACCTTCTGCTATGAGAATGTTTTAGTGGAAATGTGGGCTGTCAGGACGGGGTGATGTGGAGATAGAAGCTATATAAGTTGGAACATGAAGCTTAATGTCTAGACTTAAATCCCGCGTGTTTAGAGGATTCAACAACATGACTGATTTCATTTTCAGGGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATAT</genome_strand>
        <mrna_strand>GAGGGGAA-AAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAAAGGTTGAAAGTCTTATTGCCCTTGTTACTAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249520" ref_strand="+" ref_description="SGN-E249520 [cLEF-56-J17]">
      <seq>agaaaaaagcttcaatttttgcttcttctttggattgtgtgttctttaatcctaccatggaagccactgcttctttcacttcaactatggcttctcaccatttctttccactttctaaagccaccctttcatcttctaaacttaatcccacttgtaattcttcttcttcttggattggttctactcattctctttcattttcttcaagaaattcatttactagggatacatggagggtgatcaattccaagaatgtggtaagaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="31396" stop="30454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31096" g_stop="30876" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30800" g_stop="30754" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="268" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E249520" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31096" e_stop="30876"/>
          <exon e_start="30800" e_stop="30754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACTGTAAGACCCTTTTGGATTTTGGTTAGTTTTTTTTTTTTTTTGTAGTTTTTGGTTAAAGATTGAATTTTTATGTAGAGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGA</genome_strand>
        <mrna_strand>AGAAAAAAGCTTCAATTTTTGCTTCTTCTTTGGATTGTGTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT...........................................................................AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716405" ref_strand="+" ref_description="SGN-E716405 [FB16DH03]">
      <seq>cggtgatccctatatccagcagcaggagtttataaagttatggacgctgaaggaggcatatgttaaagcacttgggaagggtttctcatgtgcacctttcaagacgtttaccattcgtcttgggagctctactggagaacagtttcatccgtctcagaattcaagtgctgaggcgagtgaaatagtagtggattctcttgacaacacagagaaccttacaagtaattggcaatttatgctcctggagtttgctagttctcattatgttgccatttgcaccgaaaaggatgtcaatacaaaaggtgattgcgataataatccattgaaattaacagtttggaagacaattccatttgtcgaagatagttgtgtctctggaacagacacagttcttaaagtttgtggcttgagataatgattattacatccgcgatgatacttaatctgagaatctatcattatacattagaatccttggattcagagtagcaacttatattgcatccatcaattttatgctgggaaaacagattatacaagtgaatgaattctcattattttgcattcttgtctgtaagatggctagttttcttcatgattgtaaacattgcttctgtcacatatctttattttttttccacgagacgatgannnnnanaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="36601" stop="34209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36302" g_stop="36251" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36250" i_stop="35478" i_length="773">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35477" g_stop="35358" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="172" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35357" i_stop="35068" i_length="290">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35067" g_stop="34938" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="302" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34937" i_stop="34858" i_length="80">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34857" g_stop="34506" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="654" r_length="352" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34505" i_stop="34285" i_length="221">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34284" g_stop="34269" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="670" r_length="16" r_score="0.438"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E716405" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36302" e_stop="36251"/>
          <exon e_start="35477" e_stop="35358"/>
          <exon e_start="35067" e_stop="34938"/>
          <exon e_start="34857" e_stop="34506"/>
          <exon e_start="34284" e_stop="34269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGATCCCTATATCCAGCAGCAGGAGTTTATAAAGTTATGGACGCTGAAGGTAAATTTACCTTTAGGTCCTTGATAATTGTTTCAAGTTTGTCTACTTGCTTACGGCTAATCATGCTTAGTTATTACAGTCATTTGCAATAAGACAACTTAAGAAATGAAGATTGTATAAGTCATGATTTAAGACTTGAAATGCATTTGATTTAGTATCCATCAATGCACGCCAAACATCAACCCCAATGTCCACTAGTGGATGCTATGCACTGTTGCCAATGCCAGCTTTGCAAGGCCAAAGAAAGCACTGCCAGCCACGAGAACTCAAGGTCAAACTCATTCATCTGTATGTACGTACATTACATACATGAGGCATTATAAATGTTGGAGTGGGTTAGAGTCCCACATTGTTTGGGAATTTGAACATAGGAAATCCTCCTCTCATGAGCTAGTTATTGGGGTTGAGTTAGTTCCATGTGTTATATCTTTATAGAGCTAGCTATATTCCTATTTGGGCTCCAGGTCCATGCTACAGTTGGGCCTGGGCATGAAGGGAGGGGGGAGGGGGGGGGGGGGTTAGTGGGTTAGAGACCCATGTGGGTTGGGGAATGGACTGATGTTTCGCTTATAGTGACTGGAGAGTTATAACTGATCCATAACTTGGTTTTATGCGTCATATCTGATCCACTTTCTTGGAACATGTTGTCTTCACTTCTTTATCAATAAAGACGGTCGTTTCACTGCTTTTATGCTATGTAAATGTGAAGGAGGAACATTATTTCCTTGTATTATATATTATGTAAGTTCTCTGAAGAAATATATCGTTCGCAGGAGGCATATGTTAAAGCACTTGGGAAGGGTTTCTCATGTGCACCTTTCAAGACGTTTACCATTCGTCTTGGGAGCTCTACTGGAGAACAGTTTCATCCGTCTCAGAATTCAAGTGCTGAGGTATGCCAGAACAGTTACTTTTTATTCAACTTTGACGTCTACATCAGAGGGGTCTATGTTGTATTCATTAGAGGTGCATCTTTCTATGGGCTTAGCCACGTTTTTAAGTAAAAAAGTAGTCAGGTTAAACCATTTGAGAAATAAATTCACTCTTAAGCCTTGTCCAAACAGAGCATTTCCTCGGTACTGTTTTTCTCTCGAGCAAGTGCTAGCTAGCATATAGAAGATATCATATTTTTAGATCAACGTCACACTGAATGTTTTTGTTGATACACATACTTTTCTTTCAGGCGAGTGAAATAGTAGTGGATTCTCTTGACAACACAGAGAACCTTACAAGTAATTGGCAATTTATGCTCCTGGAGTTTGCTAGTTCTCATTATGTTGCCATTTGCACCGAAAAGGATGTCAATACAAAAGGTAAGAAAAGTTCTTTTCTCCCCATGAAGTTGAGAATGTCGATAAAGAAGAGTTCTAAACATGTTTTGTGATTACCACAGGTGATTGCGATAATAATCCATTGAAATTAACAGTTTGGAAGACAATTCCATTTGTCGAAGATAGTTGTGTCTCTGGAACAGACACAGTTCTTAAAGTTTGTGGCTTGAGATAATGATTATTACATCCGCGATGATACTTAATCTGAGAATCTATCATTATACATTAGAATCCTTGGATTCAGAGTAGCAACTTATATTGCATCCATCAATTTTATGCTGGGAAAACAGATTATACAAGTGAATGAATTCTCATTATTTTGCATTCTTGTCTGTAAGATGGCTAGTTTTCTTCATGATTGTAAACATTGCTTCTGTCACATATCTTTATTTTTTTTCCACGAGACGATGAAAAATCATTTGTGCTAGTGTGGAGTGTCATTCAGTAGTATGAATGCTGCGCGACAACATTTAAGAGTTGGTGCTTAGACACATATAAGGATAGAATTGATAGTTGAGGCACTAGTATGGCAAAAAAGAGAACATACATCATAATCAATAAACATTTTGTAGAATGATGGTATTAGTTCTTTGTTTATTTTAGCCAAATATGTAACTGTTTTTTTTCGAATTCAGCTCCAGTACATCAAAA</genome_strand>
        <mrna_strand>CGGTGATCCCTATATCCAGCAGCAGGAGTTTATAAAGTTATGGACGCTGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATATGTTAAAGCACTTGGGAAGGGTTTCTCATGTGCACCTTTCAAGACGTTTACCATTCGTCTTGGGAGCTCTACTGGAGAACAGTTTCATCCGTCTCAGAATTCAAGTGCTGAG..................................................................................................................................................................................................................................................................................................GCGAGTGAAATAGTAGTGGATTCTCTTGACAACACAGAGAACCTTACAAGTAATTGGCAATTTATGCTCCTGGAGTTTGCTAGTTCTCATTATGTTGCCATTTGCACCGAAAAGGATGTCAATACAAAAG................................................................................GTGATTGCGATAATAATCCATTGAAATTAACAGTTTGGAAGACAATTCCATTTGTCGAAGATAGTTGTGTCTCTGGAACAGACACAGTTCTTAAAGTTTGTGGCTTGAGATAATGATTATTACATCCGCGATGATACTTAATCTGAGAATCTATCATTATACATTAGAATCCTTGGATTCAGAGTAGCAACTTATATTGCATCCATCAATTTTATGCTGGGAAAACAGATTATACAAGTGAATGAATTCTCATTATTTTGCATTCTTGTCTGTAAGATGGCTAGTTTTCTTCATGATTGTAAACATTGCTTCTGTCACATATCTTTATTTTTTTTCCACGAGACGATGANNN.............................................................................................................................................................................................................................NNANAANAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540875" ref_strand="+" ref_description="SGN-E540875 [TUS-61-G2](-)">
      <seq>ttcgatgaaaatggacatcatagtgcttcacaaccaatagttcagaagtctaacgagatcgaggaggatatccttatatccaaagaacgaccctcaagtggcgctgctaattctgccctcagagagataatagttgagaataaatcccatggattaccatgtaccatagagaacgttcttcagaaagatgcgttcgttgattgtctcagtgaaatctcaaacctaccagacagcacaaaggatgatgagcttggatctggtaacatcaattctacaagtggaagaagtcaaccaaaaatccgaaggactaaaagcgtgcattcgagcagttctagtctgaaaggatcaaagaaaatgattgaatggccaataggtcacatatctggtagtttagagaagggcaaaggagtcagaatcatcgataggttgaattcgacaacagaaagggtggaagcatggcgatgaacaacgtctcgcctcaaggggctattgttgctacctcatcaagaagttaaatggttgtgatttatgtttggaaaaaaaagaagaagacaatgtattatccagttatgtttgtgcttggatattggttactttcttagtagttcaacaggaattctgtcacctttctctctagtcatgtttggctggggaaactagcaggatgaatgtaatttatgtttttttttttttagaatgaatattgttttggtttccaatttcaatatgattttcttcaatttgacataaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="41755" stop="1839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41455" g_stop="40702" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40701" i_stop="39513" i_length="1189">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39512" g_stop="39485" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="782" r_length="28" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E540875" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41455" e_stop="40702"/>
          <exon e_start="39512" e_stop="39485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTCAAGGGGCTATTGTTGCTACCTCATCAAGAAGTTAAATGGTTGTGATTTATGTTTGGAAAAAAAAGAAGAAGACAATGTATTATCCAGTTATGTTTGTGCTTGGATATTGGTTACTTTCTTAGTAGTTCAACAGGAATTCTGTCACCTTTCTCTCTAGTCATGTTTGGCTGGGGAAACTAGCAGGATGAATGTAATTTATGTTTTTTTTTTTTTAGAATGAATATTGTTTTGGTTTCCAATTTCAATATGATTTTCTTCAATTTGACATAAACAAGTGATTACTAGTGTTTTCAACTTACACTCCTTCATTCTTAACCAAGTTTCGCTTTTGAGTTTGAATTCATGAACATATTATTTAGTATAGCTTTTAAGTGAATATTAAAAATCAAGTGAATAAAATAAAACTAATTTGCATTACACATTAGATTTTTCAATTGAGTGAGTTTAATTATAATATAATCAAGTGAATAAAATAAAACTAATTTGCATTACACATTAGATTTTTCAATTGAGTGAGTTTAATCATAATATAGTATATTAAATTAAGTTAAATTTGGTTGTTGGATTATTTTTTCTTGTTATTGAAAAAGTAGCATTATGCATTACGTTTCGAAATTTAATATTTCTTCATAAAAATATCCAAACAAATATAATAGTGGTAAAAATGATACATAAACTGTCACCTATTCGCTTTTTCACATGCGTTGAGTGTCATATCTTAATTATCACTTACTTTATATTAAAATACATTTTGATATTGAGTTGTTCTACACGCAACTATTTTCGATATTAGGATCAATTCAACATTGAAGTATGTTCAAATACTAAGTGACACATAGTTTAGGTAGAGAAACATAAAACTCGTGAAACAATGAAAATTGAGGTATGTTTTTTACATTAAATCTTTGAATATTTTTTTAAAAAATCGTATCAGGTTCAAATCTCAGCCAAGTAAATACTAAATGATATTTTCAAGCCCTCCCAATCAGAGGCGGAGCCAGGATTCCTGACTTGTGGGTTCCAAAATTTATAGAGGTTAACGATCTTAAAAATCACAAAACACAAATTATGTTAAAGAGATATTTGTCATGTTTGAAAACATTACCTTAGATATTGTTATTCTAAAACTTATTTTGATTATATGAAGAGTTAGTAATTTATTTTAAAGTTCTAAAATACTGTTAATAAAAGATAATAATTTTAAAATATAAATTTCAAACATTTTATTATAATCTAGAATACTATTTTAAGTGAGAAAAAATTATTAAACTCACCGTTAATATTTTTGCACCTAAAATATATATTTTACTAGTTTTATTGTGATCATTGCTATCTTCAAAAGTTGAAATTTCGAAAAGCAAATAACAATTATTCACTATAATTAATTATAGATTCGTGAGATAACTCTAGAAAAGATTAAAAATTGATTTTTGAATAGATAGTTCTACGGTGTAAAAGCAAACAAATAATAAAAAAGTGAAAAAGGAAAGG</genome_strand>
        <mrna_strand>TTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTCAAGGGGCTATTGTTGCTACCTCATCAAGAAGTTAAATGGTTGTGATTTATGTTTGGAAAAAAAAGAAGAAGACAATGTATTATCCAGTTATGTTTGTGCTTGGATATTGGTTACTTTCTTAGTAGTTCAACAGGAATTCTGTCACCTTTCTCTCTAGTCATGTTTGGCTGGGGAAACTAGCAGGATGAATGTAATTTATGTTTTTTTTTTTTTAGAATGAATATTGTTTTGGTTTCCAATTTCAATATGATTTTCTTCAATTTGACATAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540877" ref_strand="+" ref_description="SGN-E540877 [TUS-61-G2]">
      <seq>ggtgtttgctccaaatatgacacagatggcagatccgttgactgctttgatgtatgcagttcaagttatgaactttctcaaaactcttattctccggactttgaaagaccgagaagaaactgttgtagaagctggtcctgcaccagaactggagcctttcgatgaaaatggacatcatagtgcttcacaaccaatagttcagaagtctaacgagatcgaggaggatatccttatatccaaagaacgaccctcaagtggcgctgctaattctgccctcagagagataatagttgagaataaatcccatggattaccatgtaccatagagaacgttcttcagaaagatgcgttcgttgattgtctcagtgaaatctcaaacctaccagacagcacaaaggatgatgagcttggatctggtaacatcaattctacaagtggaagaagtcaaccaaaaatccgaaggactaaaagcgtgcattcgagcagttctagtctgaaaggatcaaagaaaatgattgaatggccaataggtcacatatctggtagtttagagaagggcaaaggagtcagaatcatcgataggttgaattcgacaacagaaagggtggaagcatggcgatgaacaacgtctcgcctncaggggctattgttgctacctcatcaagaagttaaatggntgtgatttatgtttggaaaaaaaagaagaagacnatgtattatccagttatgtttgtgcttggatattggttactttctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="42191" stop="40555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41891" g_stop="41867" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41866" i_stop="41588" i_length="279">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41587" g_stop="40855" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="758" r_length="733" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E540877" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41891" e_stop="41867"/>
          <exon e_start="41587" e_stop="40855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTTAGGAAAGTTGTCGTGGTTGTGATATTTCCTATATGAAAGGAGTGCAATTTCCATTTCATAGACAGCAACCTAAACGTGTCAATGAAACTAATACAATAGCTCAATCATTAGTCAGCAAGTGTTTTCTTGATTAACAGATGGTGCAACTTCTTTTTCCTGCAGATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTCAAGGGGCTATTGTTGCTACCTCATCAAGAAGTTAAATGGTTGTGATTTATGTTTGGAAAAAAAAGAAGAAGACAATGTATTATCCAGTTATGTTTGTGCTTGGATATTGGTTACTTTCTTA</genome_strand>
        <mrna_strand>GGTGTTTGCTCCAAATATGACACAG.......................................................................................................................................................................................................................................................................................ATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTNCAGGGGCTATTGTTGCTACCTCATCAAGAAGTTAAATGGNTGTGATTTATGTTTGGAAAAAAAAGAAGAAGACNATGTATTATCCAGTTATGTTTGTGCTTGGATATTGGTTACTTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553355" ref_strand="+" ref_description="SGN-E553355 [cTSB-5-D20]">
      <seq>ttgacgtccattgcttagcaggtcttataaaggcttggttcagagagttgccaacgggagttttggattctctctcgccagaggaaattatgcgtgctcaatcggaagaagagtgtgtgcggctcgtgagacttcttcctccaactgaagctgctctattagattgggctattaacttgatggctgatgttgctcaactggaaagttttaacaaaatgaatgcacgtaatatcgctatggtgtttgctccaaatatgacacagatggcagatccgttgactgctttgatgtatgcagttcaagttatgaactttctcaaaactcttattctccggactttgaaagaccgagaagaaactgttgtagaagctggtcctgcaccagaactggagcctttcgatgaaaatggacatcatagtgcttcacaaccaatagttcagaagtctaacgagatcgaggaggatatccttatatccaaagaacgaccctcaagtggcgctgctaattctgccctcagagagataatagttgagaataaatcccatggattaccatgtaccatagagaacgttcttcagaaagatgcgttcgttgattgtctcagtgaaatctcaaacctaccagacagcacaaaggatgatgagcttggatctggtaacatcaattctacaagtggaagaagtcaaccaaaaatccgaaggactaaaagcgtgcattcgagcagttctagtctgaaaggatcaaagaaaatgattgaatggccaataggtcacatatctggtagtttagagaagggcaaaggagtcagaatcatcgataggttgaattcgacaacagaaagggtggaagcatggcgatgaacaacgtctcgcctcaaggggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="42944" stop="40667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42644" g_stop="42613" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="42098" i_length="515">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42097" g_stop="41867" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="263" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41866" i_stop="41588" i_length="279">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41587" g_stop="40967" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="884" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E553355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42644" e_stop="42613"/>
          <exon e_start="42097" e_stop="41867"/>
          <exon e_start="41587" e_stop="40967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTCCATTGCTTAGCAGGTCTTATAAAGGTGATATTCTGCACCTTGCTCTCGGAATATGTTTCATTCTATGTTGCTCAGCCTCTCCAAAAATGCTGCCGGTCCCGTTCAGATCCTCCAAAAAAGCACTACTTTTAGAGGATCTGACACACACTTGCGATATTTTTGAAGAGTCAGGGCGACATAGATTCCATTTGACATTTTTAGGTAATTGTTGAGAGGAAATTATTTACTCGGATTGCAAGTTATCAATATCTTCCCGTATCAGCTTTTGAGGCGAAATTTCTCATTTTGGAGGAAGTATACTTCCTCAAAATTGCATCTGAACTTGAACTAAAATTTCTTATCTTCTTCATTGATGAAGAAGGTACATTGTTATGTTCTGATCAAGTTCAAAGAGTTCTTTCTCCTCTCCCTATATGGACAGCAGTAGGAGATGGTTCTATTGACATCAATATTTGTTTTCCTTATGCATTTTATGATTGTTTTGATTTTTCATTATATCTGTATATGGTAATTGACGTAGAGTGATGATATTTTTATAGGCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTTAGGAAAGTTGTCGTGGTTGTGATATTTCCTATATGAAAGGAGTGCAATTTCCATTTCATAGACAGCAACCTAAACGTGTCAATGAAACTAATACAATAGCTCAATCATTAGTCAGCAAGTGTTTTCTTGATTAACAGATGGTGCAACTTCTTTTTCCTGCAGATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTCAAGGGGCTA</genome_strand>
        <mrna_strand>TTGACGTCCATTGCTTAGCAGGTCTTATAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAG.......................................................................................................................................................................................................................................................................................ATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTCAAGGGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553250" ref_strand="+" ref_description="SGN-E553250 [cTSB-3-I22]">
      <seq>ttgacgtccattgcttagcaggtcttataaaggcttggttcagagagttgccaacgggagttttggattctctctcgccagaggaaattatgcgtgctcaatcggaagaagagtgtgtgcggctcgtgagacttcttcctccaactgaagctgctctattagattgggctattaacttgatggctgatgttgctcaactggaaagttttaacaaaatgaatgcacgtaatatcgctatggtgtttgctccaaatatgacacagatggcagatccgttgactgctttgatgtatgcagttcaagttatgaactttctcaaaactcttattctccggactttgaaagaccgagaagaaactgttgtagaagctggtcctgcaccagaactggagcctttcgatgaaaatggacatcatagtgcttcacaaccaatagttcagaagtctaacgagatcgaggaggatatccttatatccaaagaacgaccctcaagtggcgctgctaattctgccctcagagagataatagttgagaataaatcccatggattaccatgtaccatagagaacgttcttcagaaagatgcgttcgttgattgtctcagtgaaatctcaaacctaccagacagcacaaaggatgatgagcttggatctggtaacatcaattctacaagtggaagaagtcaaccaaaaatccgaaggactaaaagcgtgcattcgagcagttctagtctgaaaggatcaaagaaaatgattgaatggccaataggtcacatatctggtagtttagaggaaggcaaaggagtcagaatcatcgataggttgaaattcgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="42944" stop="40716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42644" g_stop="42613" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42612" i_stop="42098" i_length="515">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42097" g_stop="41867" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="263" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41866" i_stop="41588" i_length="279">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41587" g_stop="41016" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="836" r_length="573" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E553250" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42644" e_stop="42613"/>
          <exon e_start="42097" e_stop="41867"/>
          <exon e_start="41587" e_stop="41016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACGTCCATTGCTTAGCAGGTCTTATAAAGGTGATATTCTGCACCTTGCTCTCGGAATATGTTTCATTCTATGTTGCTCAGCCTCTCCAAAAATGCTGCCGGTCCCGTTCAGATCCTCCAAAAAAGCACTACTTTTAGAGGATCTGACACACACTTGCGATATTTTTGAAGAGTCAGGGCGACATAGATTCCATTTGACATTTTTAGGTAATTGTTGAGAGGAAATTATTTACTCGGATTGCAAGTTATCAATATCTTCCCGTATCAGCTTTTGAGGCGAAATTTCTCATTTTGGAGGAAGTATACTTCCTCAAAATTGCATCTGAACTTGAACTAAAATTTCTTATCTTCTTCATTGATGAAGAAGGTACATTGTTATGTTCTGATCAAGTTCAAAGAGTTCTTTCTCCTCTCCCTATATGGACAGCAGTAGGAGATGGTTCTATTGACATCAATATTTGTTTTCCTTATGCATTTTATGATTGTTTTGATTTTTCATTATATCTGTATATGGTAATTGACGTAGAGTGATGATATTTTTATAGGCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTTAGGAAAGTTGTCGTGGTTGTGATATTTCCTATATGAAAGGAGTGCAATTTCCATTTCATAGACAGCAACCTAAACGTGTCAATGAAACTAATACAATAGCTCAATCATTAGTCAGCAAGTGTTTTCTTGATTAACAGATGGTGCAACTTCTTTTTCCTGCAGATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTG-AATTCGACAAC</genome_strand>
        <mrna_strand>TTGACGTCCATTGCTTAGCAGGTCTTATAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAG.......................................................................................................................................................................................................................................................................................ATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGGAAGGCAAAGGAGTCAGAATCATCGATAGGTTGAAATTCGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290732" ref_strand="+" ref_description="SGN-E290732 [cLET-10-B17]">
      <seq>gtgtttgctccaaatatgacacagatggcagatccgttgactgctttgatgtatgcagttcaagttatgaactttctcaaaactcttattctccggactttgaaagaccgagaagaaactgttgtagaagctggtcctgcaccagaactggagcctttcgatgaaaatggacatcatagtgcttcacaaccaatagttcagaagtctaacgagatcgaggaggatatccttatatccaaagaacgaccctcaagtggcgctgctaattctgccctcagagagataatagttgagaataaatcccatggattaccatgtaccatagagaacgttcttcagaaagatgcgttcgttgattgtctcagtgaaatctcaaacctaccagacagcacaaaggatgatgagcttggatctggtaacatcaattctacaagtggaagaagtcaaccaaaaatccgaaggactaaaagcgtgcattcgagcagttctagtctgaaaggatcaaagaaaatgattgaatggccaataggtcacatatctggtagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="42190" stop="40764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41890" g_stop="41867" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41866" i_stop="41588" i_length="279">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41587" g_stop="41064" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="548" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E290732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41890" e_stop="41867"/>
          <exon e_start="41587" e_stop="41064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTTAGGAAAGTTGTCGTGGTTGTGATATTTCCTATATGAAAGGAGTGCAATTTCCATTTCATAGACAGCAACCTAAACGTGTCAATGAAACTAATACAATAGCTCAATCATTAGTCAGCAAGTGTTTTCTTGATTAACAGATGGTGCAACTTCTTTTTCCTGCAGATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTT</genome_strand>
        <mrna_strand>GTGTTTGCTCCAAATATGACACAG.......................................................................................................................................................................................................................................................................................ATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333964" ref_strand="+" ref_description="SGN-E333964 [cTOD-24-P5]">
      <seq>tttcatttgactctcgaggaaatagtgtccccacaatccttctgatgatgcaagggcgcttatacgttcaaggtggcttgcaggctgaagggatcttcaggatcaatgccgaaaatggccaagaagaatttgtcagggagcagctaaatagggggattattccagataacattgacgtccattgcttagcaggtcttataaaggcttggttcagagagttgccaacgggagttttggattctctctcgccagaggaaattatgcgtgctcaatcggaagaagagtgtgtgcggctcgtgagacttcttcctccaactgaagctgctctattagattgggctattaacttgatggctgatgttgctcaactggaaagttttaacaaaatgaatgcacgtaatatcgctatggtgtttgctccaaatatgacacaggtaagtcaaaactttcatgcaatttaaaagaaggaatcatattgttgttcctataacgtctcttttcattttcttagtttcgggtgtgggtaagcgtttggggggttacagcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="43254" stop="41450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42954" g_stop="42872" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42871" i_stop="42733" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42732" g_stop="42613" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="203" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42612" i_stop="42098" i_length="515">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42097" g_stop="41750" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="551" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E333964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42954" e_stop="42872"/>
          <exon e_start="42732" e_stop="42613"/>
          <exon e_start="42097" e_stop="41750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAGGTGCGTATTCACCAACTCTTTAATCTCCCTCATGTAGATCAATTAAATGTTTGACTAGGCATCTATCACTGGTATGTGTGATCTCTAGAAGTTCGTAAGTATAACTTTTCAATGATGAAAATTAGTTATTCACTTGCAGGCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAGGTGATATTCTGCACCTTGCTCTCGGAATATGTTTCATTCTATGTTGCTCAGCCTCTCCAAAAATGCTGCCGGTCCCGTTCAGATCCTCCAAAAAAGCACTACTTTTAGAGGATCTGACACACACTTGCGATATTTTTGAAGAGTCAGGGCGACATAGATTCCATTTGACATTTTTAGGTAATTGTTGAGAGGAAATTATTTACTCGGATTGCAAGTTATCAATATCTTCCCGTATCAGCTTTTGAGGCGAAATTTCTCATTTTGGAGGAAGTATACTTCCTCAAAATTGCATCTGAACTTGAACTAAAATTTCTTATCTTCTTCATTGATGAAGAAGGTACATTGTTATGTTCTGATCAAGTTCAAAGAGTTCTTTCTCCTCTCCCTATATGGACAGCAGTAGGAGATGGTTCTATTGACATCAATATTTGTTTTCCTTATGCATTTTATGATTGTTTTGATTTTTCATTATATCTGTATATGGTAATTGACGTAGAGTGATGATATTTTTATAGGCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTT</genome_strand>
        <mrna_strand>TTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAG...........................................................................................................................................GCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207739" ref_strand="+" ref_description="SGN-E207739 [cLEC-32-C4]">
      <seq>tttcttggtcttcctgttgagtttgaacctgaagtacctagaagacccccaagtgccagtacaagagtctttggagtttcgacagattgcatgcagctttcatttgactctcgaggaaatagtgtccccacaatccttctgatgatgcaagggcgcttatacgttcaaggtggcttgcaggctgaagggatcttcaggatcaatgccgaaaatggccaagaagaatttgtcagggagcagctaaatagggggattattccagataacattgacgtccattgcttagcaggtcttataaaggcttggttcagagagttgccaacgggagttttggattctctctcgccagaggaaattatgcgtgctcaatcggaagaagagtgtgtgcggctcgtgagacttcttcctccaactgaagctgctctattagattgggctattaacttgatggctgatgttgctcaactggaaagttttaacaaaatgaatgcacgtaatatcgctatggtgtttgctccaaatatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="44930" stop="41569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44630" g_stop="44572" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44571" i_stop="42993" i_length="1579">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42992" g_stop="42872" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="180" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42871" i_stop="42733" i_length="139">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42732" g_stop="42613" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="300" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42612" i_stop="42098" i_length="515">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42097" g_stop="41869" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="529" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E207739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44630" e_stop="44572"/>
          <exon e_start="42992" e_stop="42872"/>
          <exon e_start="42732" e_stop="42613"/>
          <exon e_start="42097" e_stop="41869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGGTCTTCCTGTTGAGTTTGAACCTGAAGTACCTAGAAGACCCCCAAGTGCCAGGTTTGATCTTGTTCTTTTCTTTTTTGTGAATTCGCGGGGTTTTCTAAGTAGAGATTCATATAGTCGACTCTAACTTGATTGGAACTGAGACGTAATTGTTGTTGTTTGTTCTAAATCATTCATGAGTTAGGATATGTGCTTGGTGTTACTTTATAACCATTATTATTCTTTTGTTTTTTTCCTTGTATGTGTTTCTAGTTTTGTTGTGTTCTGATGACATTTAATGTTCGAATGTTTCCGCTGTCCTAAGCTAGTTGTCATGTTTTGCTTTTCGAGAGTCAGCTTTGATCAATCTTTTGGACCTACACTGAATTAGTTTAATTTGATATTCGAAACCTATACTTACAAGTTGCAACTTTTCTCATATCAATATGGTGAAGAAATACATCTTAATATATTGGTTATAGTTCATGTAGTTTGAATCTCAAGAAGCAAAATATAACTACTATATATTTTGGGTCGGACGGAGTAGTAGGATATGATTTTGTGAAATTCCATAATTCATTATTATTGTTATTATTATTCAAGTTTTATCTTTTTGTTCTTTTCTCTTTATGGTGAGCTGAAAAAGGGCTGTTGGCTTCTTTTAGTTTAGTTGTTTGGGCTTTTGACAGCCTTGTCCAGCAAATGCTTATGGTAAGGAGAATATATAATTATGGTTTAAATTATTCGGAGAAAACTAAAATGCAGTGGAATGCATGAATAGTTGATTAATATATCTGTGAATTGATGTGTAATTGGTGTGTCCTTGTCTTCCTTACTAGACTATAATTAGATCGAAAGTAACATGTTCTTTTGCTTCAAGTTCAGATTTTCCTTTCTTCATGATGACTAGACTTACCAAAAATTGACTATTTTTATTTGGTTGGGGAATTTAAAAGCATATTGCTTATTCAGTAATGTAGAAATTTTATCACGTGTTGGCAATATATATGTTGTGTATGAAAATGGTTAAGAAAAGGGTGCAGAGAAACATAGTGAAAGCTTAGTATAATTACTCTTCTAATTAAGAAAGTTCTTTGAACATTTTGAAATGGTAGTTGCTTAGGAAATCCCGGGATAGATGAGCAAAAATTGAAGAAAATGAAGTATAGGCCTTTTAATTTTACCTTCTAGTTTCATATGTCCTCGAGCACTGTGGGAATATGTCATCCTTCAACATAGTAAAAGAAAATGAGAACTGTAAAAAAGAAAAGAAAAAGTTGGTTCTCTTTGTTTGGCAAACAAGCTGTTGCTTCATAATTGTTACAATAATAACTATGTTAACAGTCCAAAACAATTGGGGTAAGGCGATATGAATCCTCTATATCTTTCAACTTCCTATGTGCCTGTTTCATCTCAATACTTCTATTTCATAATTGTTAAAGTTGATACCGACCTAGTACTGAAAAGCTATATCATATATCATACATGTTTTGTGATGGCGTATTACTTTTGTGTAACTTCTTTTGTATCGTAGTAACTTCTGATCCTATCCTTTTTACGAGCTTTTATATGGTGTAGAACAACTTGTTCAGATTGTTGCCTAGTAAAAAAGTGTCACGCTCTTCTAATTGATATTGGTGTTGTTTTTTTGCAGTACAAGAGTCTTTGGAGTTTCGACAGATTGCATGCAGCTTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAGGTGCGTATTCACCAACTCTTTAATCTCCCTCATGTAGATCAATTAAATGTTTGACTAGGCATCTATCACTGGTATGTGTGATCTCTAGAAGTTCGTAAGTATAACTTTTCAATGATGAAAATTAGTTATTCACTTGCAGGCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAGGTGATATTCTGCACCTTGCTCTCGGAATATGTTTCATTCTATGTTGCTCAGCCTCTCCAAAAATGCTGCCGGTCCCGTTCAGATCCTCCAAAAAAGCACTACTTTTAGAGGATCTGACACACACTTGCGATATTTTTGAAGAGTCAGGGCGACATAGATTCCATTTGACATTTTTAGGTAATTGTTGAGAGGAAATTATTTACTCGGATTGCAAGTTATCAATATCTTCCCGTATCAGCTTTTGAGGCGAAATTTCTCATTTTGGAGGAAGTATACTTCCTCAAAATTGCATCTGAACTTGAACTAAAATTTCTTATCTTCTTCATTGATGAAGAAGGTACATTGTTATGTTCTGATCAAGTTCAAAGAGTTCTTTCTCCTCTCCCTATATGGACAGCAGTAGGAGATGGTTCTATTGACATCAATATTTGTTTTCCTTATGCATTTTATGATTGTTTTGATTTTTCATTATATCTGTATATGGTAATTGACGTAGAGTGATGATATTTTTATAGGCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACAC</genome_strand>
        <mrna_strand>TTTCTTGGTCTTCCTGTTGAGTTTGAACCTGAAGTACCTAGAAGACCCCCAAGTGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGAGTCTTTGGAGTTTCGACAGATTGCATGCAGCTTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAG...........................................................................................................................................GCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="56408" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56108" g_stop="55887" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56108" e_stop="55887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCCTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGA-TTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAGAATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTTAGTAATTTGAAG-TACATGTTCTTGTGATGATGACTGCCAGATTTTGGG--G-ATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290904" ref_strand="+" ref_description="SGN-E290904 [cLET-8-A11]">
      <seq>catttcacagacatgggagacctgaatttcctcatgtgcagggccattgataatcccggcttaactccatcctcttcacttagaacttctctgatctccgtgtttgaagacactgagatcgatacctccagcacaatgcatcaagaaatcggattacaagacttcatcgggtgtgcattcgcgcatgggggaggcccttatattgccatattcgacacaatcagggacaggacatttggattgtgcatgcgtgaatcccttccccttgcatactagagagcaaatacaggagctcattggtgaaatgaaaaaaatccttattgactgctagtatattactaaaacaagacactatattctcccactcatcatgttcaatgaaaatgcagtaagttggtcgtttttgacaaatgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="61381" stop="60375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61081" g_stop="60666" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E290904" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61081" e_stop="60666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGAC-GGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAA-ACACTATATTTTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGTTTGTTTTTGACATCAAAAGTT</genome_strand>
        <mrna_strand>CATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGAGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTACAAGACTTCATCGGGTGTGCATTCGCGCATGGGGGAGGCCCTTATATTGCCATATTCGACACAATCAGGGACAGGACATTTGGATTGTGCATGCGTGAATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAAGACACTATATTCTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGGTCGTTTTTGACAAATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353825" ref_strand="+" ref_description="SGN-E353825 [cTOS-10-B7]">
      <seq>gattttgtaatttgaagtttatggattcggaatcaacgagaggatcacaagttgtgaaattgcagttgaataaacaagagactgatcacattcttgatggctgtaaaacgagaggtataaaactgtgtggactattggctgctgctggattaattgcagctcattccttaaaaggcctaaaggagaatcaatgggagaagtatgcaattgtaacccttattaactgccgttcaattcttgatccagtgcttagccctgattttccaggcttttatcattctgccatcctcaacacgcatgacgttaagggaggagatgacttatgggagctagcaaagagaagttacacatcttttatcaacgccaagaacaataacaagcatttcacagacatgggagacctgaatttcctcatgtgcagggccattgataatcccggcttaactccatcctcttcacttagaacttctctgatctccgtgtttgaagacactgtgatcgatacctccagcacaatgcatcaagaaatcggattagaagacttcatcgggtgtgcatccgtgcatggggtangcccttctatttgcatattcgacacaatcaggnacggacatttggattgtgcatgtgtttatcccttcccctgcatactagagagcaatacaggagctcattggtgaaatgaaaaaaatcctattgactgctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="64953" stop="60452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64653" g_stop="64556" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64555" i_stop="62730" i_length="1826">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62729" g_stop="62561" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="267" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62560" i_stop="61195" i_length="1366">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61194" g_stop="60752" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="707" r_length="440" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E353825" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64653" e_stop="64556"/>
          <exon e_start="62729" e_stop="62561"/>
          <exon e_start="61194" e_stop="60752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGATGTAAGTTCTTCGCATTTTAGTAAATTTCTTACCTTTTTACGCATCTCGATTAATTTCATTTTATTTATGATTTTGTTCATCGAGACTTGATTAGATAAGAAGAAATCACATAGCACTTGTTAAGTCTTTGATAGTTTTTTTTGACAACACATTAATTTTAAACTTTTGCGCTTATTTCTTTTTTTTATAAATTTTATGTTTATTAAGGCTTGATTAGATAAGAAGAGATCACATACTCACTCGTTTCAATTTGTTTATTTTGTTATCTTTTTAGTCGTTTCAAATAAGAACGACTCTTTTTTCTTTTTTGGTTGACCTCTCATTAATTTTATTTTTCATGTGATATGTTTACTCACAAGATTAAAAGTTATTTTGATATATTTTATATATCTTTAATTTAAAATGATAGGAATCGATTTCTAAAACTATATTTTAAATTATAATCAGATAAATAAATTGAAACGGGAATAGTGTTTTTCTTAAGCTTCCTTAATTTAGAGCAAGATAGTGATATTCCTTTTTTTCTCTTTCAATAAATTTAATTGTCAGTGTGTTAAATATATATTTGATAATTGATAGAGAAACACTAATGTTTTACAAACTTAAAGAATTTAAAACTTTTAAAATACTATATTTAAGGAAGTATGTTAAGCCTATCTAAATTAAAAGGATTATTTTTGTCATTTTCTCGATGTATGGTGTGTTGTCTTTAATCATATATTTTTCTGACTTTATCATAATTAATTATAATTTCCTTAGTATTATTTGATAATGTATATTTTTCTCACTTAATCATAAATTAATTATAATATCCTTAGTGGTATATTAAAAATATGAAAATAGATATTATGGTTGAAATTTAAGTGGAGACAATACATTAGATGATTCAAATTTCTTTCTCTAGTATTGAAATCGAATTGGCAGAAAGTACCGAAAGTCGGCCTCCCGCCCTATCATCCCGTGTCTCAACCAATTTTTTTCTTGTCTCCAAATCTCTCTTTTGGCTTTTGAAACTTTGATTCGGTGCCTAAATTTTGATCGATAAAGTTATCTGGTATTTACCTAGATGGCAAATAGTAGGTATCTAATTGATAACGTTTGCAAACTGAGTTGAACATCATCGTCATACAAAAATAGATTTAAATGTCATTTTCAAATTGTCAAGTTAGGTTGACATTTTATTTTCATTTTCTTTAGAAATTAGGCAAAGCTACTCTATGAAAACTTGCTTGGCCCAATTTTCTTTTTTAGGTTAGTCTCATTTATGGCCCTCATTGAATATTCTCTTCACATGATGTCCAACTTTAATCATATTTGAATTGTGAATTGGCCAATTTGCATGCTACATCTTTCACATGACTAGAATCTGGCCTGATTGTGAGTAATGATATTACTAATTTTTCTAAAAATAACTCGTGGTGTTCGGGTCGACTAGTGGTTACCTCAGTACTTTCCATCTGCATGTGTATCAAGCAACTCTGTTCACCGAGAATGGTATAAACTAATACCGTTAAATCAAAAGATCCAATTCGGCTCAACTAAGATCAGGTTTATAGCCTGATTAATGGTTTAAATTTTATACATCGACAGTGCAAGATCACATTATTTAGAAGTTAGTTGTATGTAACTGCCTGTGATAAGTGTGTGCGACACTACAAAAATGTTGTTCGCCAATGTCAAATCTTCAAAAATTACATTACTTTATCCGAATGCACCTGAAAAACATTTTTGAAGAGTCTGAGCAACAGGTTACGACTCCCTATCTAAATGTACATTGTTTGCACTTTAGAGCATTAGAGGTAGTAACAAAATCTGAATTTTGGTAGGGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAGGTTCGTTAATGCATTCATGGTAAAAACTTACTTGTATCGGGTCTTTATATTTCTTGTACCGAGGCCTCCACTCTTGACACCCATCTAACCCCATTGGTTACTACTGTCTACTGGTATCCGATCTTTTTTTTCTTCTTTTTGGACCCAAGTTAATAATAAATGGTACCGCTACTGATGTTCTACCAGTTGGTCAAGGCTAGTACACTCTTAGGTCCAGGTAACTACTCCCAATTGATCAAGGCTAGTACACATGACAGACTCTAGAACCCCCTCTTTGATTTTCGTGCTCAAGCGTTGCTTTGATAGTAATTGTTATAGACTAAATAGAAAACCTCAGCCTATTAAGGGAGGGAGAACCTGTCAATCTATAAACTCATACGTACACTCAATCGGGAGTCAAGTATTGGTTTGCAAGGATTCCTTTTAAGGTAAATAATAGAGTTGCTATATGTGACTTGCAAGTTCGTTGCCCATTATCTATGTACTTGGAAAAGCTCAAATTACCCTTAGTCTGCTGGAAACATCCTATTAGCCCTTTTAACTTGAGCAAGTACACCATACTTCAGTAGTCAGTACCATGTGATTGTTCTTACATTTGATGTAACTCTCACTTCTGTTCAGCTTTTTCTTTTCATTGCTATTGTTGTATCTTATCAGCCTTTCTCGAGTCTTAAAACTCCGACTTCTAAACTCAAAACTGGTTTGAAATGCCCATTTTGAGCTGGTTCAGGCTGATTGTTCCCGCTTATCTAGATTTCACTAATTGTGAGCTTCTGTTATTTTGGTCATTTCGATTACTGCATTGTGATGTTTACTGAACAGAGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAGCAATTTTTAATTTTGGGGCTTTGATACCATGTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCGTGGACAATTTTACGCCCAGTGCGTGGACAATTTTAATTTTGGGGACCACAACATCGGGTGAGACGGACCCAGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACACCTCAAAAGCTAGCTCAAAGAGAGGAGGATTGCCTAAGCCTTATAAAGAATTCACCCATCTCATTAATCATCGATGTGAGACTTTTGTCATTCTTTAACAGAGCATATTAAAATGATCTAAATCGTGCAGGCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGACGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAG</genome_strand>
        <mrna_strand>GATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTANGCCCTTCTATTTGCATATTCGACACAATCAGGNACGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCC-TGCATACTAGAGAGC-AATACAGGAGCTCATTGGTGAAATGAAAAAAATCC-TATTGACTGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249848" ref_strand="+" ref_description="SGN-E249848 [cLEF-57-K12]">
      <seq>gctggtgagttgtgagaaggaagaatgaaaaaggacagaattggaaatattgaaaaagaaggaggttggtttggggattgaaaaatatattccagatggtaaagcgagtaaaccattttgggcgcgtgggattgatatggtggggtatggtttgaattcattgagattttgtaatttgaagtttatggattcggaatcaacgagaggatcacaagttgtgaaattgcagttgaataaacaagagactgatcacattcttgatggctgtaaaacgagaggtataaaactgtgtggactattggctgctgctggattaattgcagctcattccttaaaaagcctaaaggagaatcaatgggagaagtatgcaattgtaacccttattaactgccgttcaattcttgatccagtgcttagccctgattttccaggcttttatcattctgccatcctcaacacgcatgacgttaagggaggagatgacttatgggagctagcaaaaagaagttacacatcttttatcaacgccaagaacaataacaagcatttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65117" stop="60774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64817" g_stop="64556" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64555" i_stop="62730" i_length="1826">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62729" g_stop="62561" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="431" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62560" i_stop="61195" i_length="1366">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61194" g_stop="61074" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="552" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E249848" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64817" e_stop="64556"/>
          <exon e_start="62729" e_stop="62561"/>
          <exon e_start="61194" e_stop="61074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGATGTAAGTTCTTCGCATTTTAGTAAATTTCTTACCTTTTTACGCATCTCGATTAATTTCATTTTATTTATGATTTTGTTCATCGAGACTTGATTAGATAAGAAGAAATCACATAGCACTTGTTAAGTCTTTGATAGTTTTTTTTGACAACACATTAATTTTAAACTTTTGCGCTTATTTCTTTTTTTTATAAATTTTATGTTTATTAAGGCTTGATTAGATAAGAAGAGATCACATACTCACTCGTTTCAATTTGTTTATTTTGTTATCTTTTTAGTCGTTTCAAATAAGAACGACTCTTTTTTCTTTTTTGGTTGACCTCTCATTAATTTTATTTTTCATGTGATATGTTTACTCACAAGATTAAAAGTTATTTTGATATATTTTATATATCTTTAATTTAAAATGATAGGAATCGATTTCTAAAACTATATTTTAAATTATAATCAGATAAATAAATTGAAACGGGAATAGTGTTTTTCTTAAGCTTCCTTAATTTAGAGCAAGATAGTGATATTCCTTTTTTTCTCTTTCAATAAATTTAATTGTCAGTGTGTTAAATATATATTTGATAATTGATAGAGAAACACTAATGTTTTACAAACTTAAAGAATTTAAAACTTTTAAAATACTATATTTAAGGAAGTATGTTAAGCCTATCTAAATTAAAAGGATTATTTTTGTCATTTTCTCGATGTATGGTGTGTTGTCTTTAATCATATATTTTTCTGACTTTATCATAATTAATTATAATTTCCTTAGTATTATTTGATAATGTATATTTTTCTCACTTAATCATAAATTAATTATAATATCCTTAGTGGTATATTAAAAATATGAAAATAGATATTATGGTTGAAATTTAAGTGGAGACAATACATTAGATGATTCAAATTTCTTTCTCTAGTATTGAAATCGAATTGGCAGAAAGTACCGAAAGTCGGCCTCCCGCCCTATCATCCCGTGTCTCAACCAATTTTTTTCTTGTCTCCAAATCTCTCTTTTGGCTTTTGAAACTTTGATTCGGTGCCTAAATTTTGATCGATAAAGTTATCTGGTATTTACCTAGATGGCAAATAGTAGGTATCTAATTGATAACGTTTGCAAACTGAGTTGAACATCATCGTCATACAAAAATAGATTTAAATGTCATTTTCAAATTGTCAAGTTAGGTTGACATTTTATTTTCATTTTCTTTAGAAATTAGGCAAAGCTACTCTATGAAAACTTGCTTGGCCCAATTTTCTTTTTTAGGTTAGTCTCATTTATGGCCCTCATTGAATATTCTCTTCACATGATGTCCAACTTTAATCATATTTGAATTGTGAATTGGCCAATTTGCATGCTACATCTTTCACATGACTAGAATCTGGCCTGATTGTGAGTAATGATATTACTAATTTTTCTAAAAATAACTCGTGGTGTTCGGGTCGACTAGTGGTTACCTCAGTACTTTCCATCTGCATGTGTATCAAGCAACTCTGTTCACCGAGAATGGTATAAACTAATACCGTTAAATCAAAAGATCCAATTCGGCTCAACTAAGATCAGGTTTATAGCCTGATTAATGGTTTAAATTTTATACATCGACAGTGCAAGATCACATTATTTAGAAGTTAGTTGTATGTAACTGCCTGTGATAAGTGTGTGCGACACTACAAAAATGTTGTTCGCCAATGTCAAATCTTCAAAAATTACATTACTTTATCCGAATGCACCTGAAAAACATTTTTGAAGAGTCTGAGCAACAGGTTACGACTCCCTATCTAAATGTACATTGTTTGCACTTTAGAGCATTAGAGGTAGTAACAAAATCTGAATTTTGGTAGGGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAGGTTCGTTAATGCATTCATGGTAAAAACTTACTTGTATCGGGTCTTTATATTTCTTGTACCGAGGCCTCCACTCTTGACACCCATCTAACCCCATTGGTTACTACTGTCTACTGGTATCCGATCTTTTTTTTCTTCTTTTTGGACCCAAGTTAATAATAAATGGTACCGCTACTGATGTTCTACCAGTTGGTCAAGGCTAGTACACTCTTAGGTCCAGGTAACTACTCCCAATTGATCAAGGCTAGTACACATGACAGACTCTAGAACCCCCTCTTTGATTTTCGTGCTCAAGCGTTGCTTTGATAGTAATTGTTATAGACTAAATAGAAAACCTCAGCCTATTAAGGGAGGGAGAACCTGTCAATCTATAAACTCATACGTACACTCAATCGGGAGTCAAGTATTGGTTTGCAAGGATTCCTTTTAAGGTAAATAATAGAGTTGCTATATGTGACTTGCAAGTTCGTTGCCCATTATCTATGTACTTGGAAAAGCTCAAATTACCCTTAGTCTGCTGGAAACATCCTATTAGCCCTTTTAACTTGAGCAAGTACACCATACTTCAGTAGTCAGTACCATGTGATTGTTCTTACATTTGATGTAACTCTCACTTCTGTTCAGCTTTTTCTTTTCATTGCTATTGTTGTATCTTATCAGCCTTTCTCGAGTCTTAAAACTCCGACTTCTAAACTCAAAACTGGTTTGAAATGCCCATTTTGAGCTGGTTCAGGCTGATTGTTCCCGCTTATCTAGATTTCACTAATTGTGAGCTTCTGTTATTTTGGTCATTTCGATTACTGCATTGTGATGTTTACTGAACAGAGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAGCAATTTTTAATTTTGGGGCTTTGATACCATGTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCGTGGACAATTTTACGCCCAGTGCGTGGACAATTTTAATTTTGGGGACCACAACATCGGGTGAGACGGACCCAGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACACCTCAAAAGCTAGCTCAAAGAGAGGAGGATTGCCTAAGCCTTATAAAGAATTCACCCATCTCATTAATCATCGATGTGAGACTTTTGTCATTCTTTAACAGAGCATATTAAAATGATCTAAATCGTGCAGGCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCAC</genome_strand>
        <mrna_strand>GCTGGTGAGTTGTGAGAAGGAAGAATGAAAAAGGACAGAATTGGAAATATTGAAAAAGAAGGAGGTTGGTTTGGGGATTGAAAAATATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAAGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAAAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327500" ref_strand="+" ref_description="SGN-E327500 [cTOC-19-L18]">
      <seq>aaacctccgatctcacctccgtctccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatcttcttcgccagcatttatcaattagaaaacgaaaaatcggtgttcgctttaaggattcatacatcggtgtgtgatcgggcggctgcattggcggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaagaagggacagaattggaaatattgaaaaagatggaggttggtttggggattgaagagtatattccagatggtaaagcgagtaaaccattttgggcgcgtgggattgatatggtggggtatggtttgaattcattgagattttgtaatttgaagtttatggattcggaatcaacgagaggatcacaagttgtgaaattgcagttgaataaacaagagactgatcacattcttgatggctgtaaaacgagaggtataaaactgtgtggactattggctgctgctggattaattgcagctcattccttaaaaggcctaaaagagaatcaatgggagaagtatgcaattgtaacccttattaactgccgttcaattcttgatccagtgcttagccctgattttccaggctttatcattctgccatcctcacacgcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65340" stop="60860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65040" g_stop="64556" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64555" i_stop="62730" i_length="1826">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62729" g_stop="62561" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="654" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62560" i_stop="61195" i_length="1366">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61194" g_stop="61160" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="687" r_length="33" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E327500" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65040" e_stop="64556"/>
          <exon e_start="62729" e_stop="62561"/>
          <exon e_start="61194" e_stop="61160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGATGTAAGTTCTTCGCATTTTAGTAAATTTCTTACCTTTTTACGCATCTCGATTAATTTCATTTTATTTATGATTTTGTTCATCGAGACTTGATTAGATAAGAAGAAATCACATAGCACTTGTTAAGTCTTTGATAGTTTTTTTTGACAACACATTAATTTTAAACTTTTGCGCTTATTTCTTTTTTTTATAAATTTTATGTTTATTAAGGCTTGATTAGATAAGAAGAGATCACATACTCACTCGTTTCAATTTGTTTATTTTGTTATCTTTTTAGTCGTTTCAAATAAGAACGACTCTTTTTTCTTTTTTGGTTGACCTCTCATTAATTTTATTTTTCATGTGATATGTTTACTCACAAGATTAAAAGTTATTTTGATATATTTTATATATCTTTAATTTAAAATGATAGGAATCGATTTCTAAAACTATATTTTAAATTATAATCAGATAAATAAATTGAAACGGGAATAGTGTTTTTCTTAAGCTTCCTTAATTTAGAGCAAGATAGTGATATTCCTTTTTTTCTCTTTCAATAAATTTAATTGTCAGTGTGTTAAATATATATTTGATAATTGATAGAGAAACACTAATGTTTTACAAACTTAAAGAATTTAAAACTTTTAAAATACTATATTTAAGGAAGTATGTTAAGCCTATCTAAATTAAAAGGATTATTTTTGTCATTTTCTCGATGTATGGTGTGTTGTCTTTAATCATATATTTTTCTGACTTTATCATAATTAATTATAATTTCCTTAGTATTATTTGATAATGTATATTTTTCTCACTTAATCATAAATTAATTATAATATCCTTAGTGGTATATTAAAAATATGAAAATAGATATTATGGTTGAAATTTAAGTGGAGACAATACATTAGATGATTCAAATTTCTTTCTCTAGTATTGAAATCGAATTGGCAGAAAGTACCGAAAGTCGGCCTCCCGCCCTATCATCCCGTGTCTCAACCAATTTTTTTCTTGTCTCCAAATCTCTCTTTTGGCTTTTGAAACTTTGATTCGGTGCCTAAATTTTGATCGATAAAGTTATCTGGTATTTACCTAGATGGCAAATAGTAGGTATCTAATTGATAACGTTTGCAAACTGAGTTGAACATCATCGTCATACAAAAATAGATTTAAATGTCATTTTCAAATTGTCAAGTTAGGTTGACATTTTATTTTCATTTTCTTTAGAAATTAGGCAAAGCTACTCTATGAAAACTTGCTTGGCCCAATTTTCTTTTTTAGGTTAGTCTCATTTATGGCCCTCATTGAATATTCTCTTCACATGATGTCCAACTTTAATCATATTTGAATTGTGAATTGGCCAATTTGCATGCTACATCTTTCACATGACTAGAATCTGGCCTGATTGTGAGTAATGATATTACTAATTTTTCTAAAAATAACTCGTGGTGTTCGGGTCGACTAGTGGTTACCTCAGTACTTTCCATCTGCATGTGTATCAAGCAACTCTGTTCACCGAGAATGGTATAAACTAATACCGTTAAATCAAAAGATCCAATTCGGCTCAACTAAGATCAGGTTTATAGCCTGATTAATGGTTTAAATTTTATACATCGACAGTGCAAGATCACATTATTTAGAAGTTAGTTGTATGTAACTGCCTGTGATAAGTGTGTGCGACACTACAAAAATGTTGTTCGCCAATGTCAAATCTTCAAAAATTACATTACTTTATCCGAATGCACCTGAAAAACATTTTTGAAGAGTCTGAGCAACAGGTTACGACTCCCTATCTAAATGTACATTGTTTGCACTTTAGAGCATTAGAGGTAGTAACAAAATCTGAATTTTGGTAGGGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAGGTTCGTTAATGCATTCATGGTAAAAACTTACTTGTATCGGGTCTTTATATTTCTTGTACCGAGGCCTCCACTCTTGACACCCATCTAACCCCATTGGTTACTACTGTCTACTGGTATCCGATCTTTTTTTTCTTCTTTTTGGACCCAAGTTAATAATAAATGGTACCGCTACTGATGTTCTACCAGTTGGTCAAGGCTAGTACACTCTTAGGTCCAGGTAACTACTCCCAATTGATCAAGGCTAGTACACATGACAGACTCTAGAACCCCCTCTTTGATTTTCGTGCTCAAGCGTTGCTTTGATAGTAATTGTTATAGACTAAATAGAAAACCTCAGCCTATTAAGGGAGGGAGAACCTGTCAATCTATAAACTCATACGTACACTCAATCGGGAGTCAAGTATTGGTTTGCAAGGATTCCTTTTAAGGTAAATAATAGAGTTGCTATATGTGACTTGCAAGTTCGTTGCCCATTATCTATGTACTTGGAAAAGCTCAAATTACCCTTAGTCTGCTGGAAACATCCTATTAGCCCTTTTAACTTGAGCAAGTACACCATACTTCAGTAGTCAGTACCATGTGATTGTTCTTACATTTGATGTAACTCTCACTTCTGTTCAGCTTTTTCTTTTCATTGCTATTGTTGTATCTTATCAGCCTTTCTCGAGTCTTAAAACTCCGACTTCTAAACTCAAAACTGGTTTGAAATGCCCATTTTGAGCTGGTTCAGGCTGATTGTTCCCGCTTATCTAGATTTCACTAATTGTGAGCTTCTGTTATTTTGGTCATTTCGATTACTGCATTGTGATGTTTACTGAACAGAGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAGCAATTTTTAATTTTGGGGCTTTGATACCATGTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCGTGGACAATTTTACGCCCAGTGCGTGGACAATTTTAATTTTGGGGACCACAACATCGGGTGAGACGGACCCAGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACACCTCAAAAGCTAGCTCAAAGAGAGGAGGATTGCCTAAGCCTTATAAAGAATTCACCCATCTCATTAATCATCGATGTGAGACTTTTGTCATTCTTTAACAGAGCATATTAAAATGATCTAAATCGTGCAGGCTTTTATCATTCTGCCATCCTCAACACGCATGAC</genome_strand>
        <mrna_strand>AAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAAGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-TTTATCATTCTGCCATCCTC-ACACGCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729967" ref_strand="+" ref_description="SGN-E729967 [LA22CF01]">
      <seq>acactatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattcctactcttacatcattccctccacttctcatcttcaaatccagccgttcgatctctcatcaacggttcagattctccgacgcctcaaaacctccgatctcacctccgtctccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatcttcttcgccagcatttatcaattagaaaacgaaaaatcggtgttcgctttaaggattcatacatcggtgtgtgatcgggcggctgcattggcggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaagaagggacagaattggaaatattgaaaaagatggaggttggtttggggattgaagagtatattccagatggtaaagcgagtaaaccattttgggcgcgtgggattgatatggtggggtatggtttgaattcattgagattttgtaatttgaagtttatggattcggaatcaacgagaggatcacaagttgtgaaattgcagttgaataaacaagagactgatcacattcttgatggctgtaaaacgagaggtataaaactgtgtggactattggctgctgctggattaattgcagctcattccttaaaaggcctaaaggagaatcaatgggagaagtatgcaattgtaacccttattaactgccgttccattcttgatccagtgcttagccctgattttccagggttttatcattctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65519" stop="60877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65219" g_stop="64556" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64555" i_stop="62730" i_length="1826">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62729" g_stop="62561" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="834" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62560" i_stop="61195" i_length="1366">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61194" g_stop="61177" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="835" r_stop="852" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E729967" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65219" e_stop="64556"/>
          <exon e_start="62729" e_stop="62561"/>
          <exon e_start="61194" e_stop="61177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAC-ATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGATGTAAGTTCTTCGCATTTTAGTAAATTTCTTACCTTTTTACGCATCTCGATTAATTTCATTTTATTTATGATTTTGTTCATCGAGACTTGATTAGATAAGAAGAAATCACATAGCACTTGTTAAGTCTTTGATAGTTTTTTTTGACAACACATTAATTTTAAACTTTTGCGCTTATTTCTTTTTTTTATAAATTTTATGTTTATTAAGGCTTGATTAGATAAGAAGAGATCACATACTCACTCGTTTCAATTTGTTTATTTTGTTATCTTTTTAGTCGTTTCAAATAAGAACGACTCTTTTTTCTTTTTTGGTTGACCTCTCATTAATTTTATTTTTCATGTGATATGTTTACTCACAAGATTAAAAGTTATTTTGATATATTTTATATATCTTTAATTTAAAATGATAGGAATCGATTTCTAAAACTATATTTTAAATTATAATCAGATAAATAAATTGAAACGGGAATAGTGTTTTTCTTAAGCTTCCTTAATTTAGAGCAAGATAGTGATATTCCTTTTTTTCTCTTTCAATAAATTTAATTGTCAGTGTGTTAAATATATATTTGATAATTGATAGAGAAACACTAATGTTTTACAAACTTAAAGAATTTAAAACTTTTAAAATACTATATTTAAGGAAGTATGTTAAGCCTATCTAAATTAAAAGGATTATTTTTGTCATTTTCTCGATGTATGGTGTGTTGTCTTTAATCATATATTTTTCTGACTTTATCATAATTAATTATAATTTCCTTAGTATTATTTGATAATGTATATTTTTCTCACTTAATCATAAATTAATTATAATATCCTTAGTGGTATATTAAAAATATGAAAATAGATATTATGGTTGAAATTTAAGTGGAGACAATACATTAGATGATTCAAATTTCTTTCTCTAGTATTGAAATCGAATTGGCAGAAAGTACCGAAAGTCGGCCTCCCGCCCTATCATCCCGTGTCTCAACCAATTTTTTTCTTGTCTCCAAATCTCTCTTTTGGCTTTTGAAACTTTGATTCGGTGCCTAAATTTTGATCGATAAAGTTATCTGGTATTTACCTAGATGGCAAATAGTAGGTATCTAATTGATAACGTTTGCAAACTGAGTTGAACATCATCGTCATACAAAAATAGATTTAAATGTCATTTTCAAATTGTCAAGTTAGGTTGACATTTTATTTTCATTTTCTTTAGAAATTAGGCAAAGCTACTCTATGAAAACTTGCTTGGCCCAATTTTCTTTTTTAGGTTAGTCTCATTTATGGCCCTCATTGAATATTCTCTTCACATGATGTCCAACTTTAATCATATTTGAATTGTGAATTGGCCAATTTGCATGCTACATCTTTCACATGACTAGAATCTGGCCTGATTGTGAGTAATGATATTACTAATTTTTCTAAAAATAACTCGTGGTGTTCGGGTCGACTAGTGGTTACCTCAGTACTTTCCATCTGCATGTGTATCAAGCAACTCTGTTCACCGAGAATGGTATAAACTAATACCGTTAAATCAAAAGATCCAATTCGGCTCAACTAAGATCAGGTTTATAGCCTGATTAATGGTTTAAATTTTATACATCGACAGTGCAAGATCACATTATTTAGAAGTTAGTTGTATGTAACTGCCTGTGATAAGTGTGTGCGACACTACAAAAATGTTGTTCGCCAATGTCAAATCTTCAAAAATTACATTACTTTATCCGAATGCACCTGAAAAACATTTTTGAAGAGTCTGAGCAACAGGTTACGACTCCCTATCTAAATGTACATTGTTTGCACTTTAGAGCATTAGAGGTAGTAACAAAATCTGAATTTTGGTAGGGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAGGTTCGTTAATGCATTCATGGTAAAAACTTACTTGTATCGGGTCTTTATATTTCTTGTACCGAGGCCTCCACTCTTGACACCCATCTAACCCCATTGGTTACTACTGTCTACTGGTATCCGATCTTTTTTTTCTTCTTTTTGGACCCAAGTTAATAATAAATGGTACCGCTACTGATGTTCTACCAGTTGGTCAAGGCTAGTACACTCTTAGGTCCAGGTAACTACTCCCAATTGATCAAGGCTAGTACACATGACAGACTCTAGAACCCCCTCTTTGATTTTCGTGCTCAAGCGTTGCTTTGATAGTAATTGTTATAGACTAAATAGAAAACCTCAGCCTATTAAGGGAGGGAGAACCTGTCAATCTATAAACTCATACGTACACTCAATCGGGAGTCAAGTATTGGTTTGCAAGGATTCCTTTTAAGGTAAATAATAGAGTTGCTATATGTGACTTGCAAGTTCGTTGCCCATTATCTATGTACTTGGAAAAGCTCAAATTACCCTTAGTCTGCTGGAAACATCCTATTAGCCCTTTTAACTTGAGCAAGTACACCATACTTCAGTAGTCAGTACCATGTGATTGTTCTTACATTTGATGTAACTCTCACTTCTGTTCAGCTTTTTCTTTTCATTGCTATTGTTGTATCTTATCAGCCTTTCTCGAGTCTTAAAACTCCGACTTCTAAACTCAAAACTGGTTTGAAATGCCCATTTTGAGCTGGTTCAGGCTGATTGTTCCCGCTTATCTAGATTTCACTAATTGTGAGCTTCTGTTATTTTGGTCATTTCGATTACTGCATTGTGATGTTTACTGAACAGAGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCTTAGCATCTGGTGCGTGAGCAATTTTTAATTTTGGGGCTTTGATACCATGTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCTTTAACACCCCACCTCACGCCCAGTGCGTGGACAATTTTACGCCCAGTGCGTGGACAATTTTAATTTTGGGGACCACAACATCGGGTGAGACGGACCCAGCTCTGATACCATGTGAAATTAGGTCTTAGGCCTAACTCACACCTCAAAAGCTAGCTCAAAGAGAGGAGGATTGCCTAAGCCTTATAAAGAATTCACCCATCTCATTAATCATCGATGTGAGACTTTTGTCATTCTTTAACAGAGCATATTAAAATGATCTAAATCGTGCAGGCTTTTATCATTCTGCCA</genome_strand>
        <mrna_strand>ACACTATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCCATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTATCATTCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268607" ref_strand="+" ref_description="SGN-E268607 [cLEI-13-B10]">
      <seq>aaggattcatacatcggtgtgtgatcgggcgggtgcattgggggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaataatggacagaattggaaatattgaaaaagatggaggttggtttggggattgaagagtatattccaaatggtaaagcgagtgaaccattttgggcgcgtgggattgatatggtggggtatggttggaattcattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65180" stop="64352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64880" g_stop="64652" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E268607" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64880" e_stop="64652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGA</genome_strand>
        <mrna_strand>AAGGATTCATACATCGGTGTGTGATCGGGCGGGTGCATTGGGGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAATAATGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAAATGGTAAAGCGAGTGAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTGGAATTCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370074" ref_strand="+" ref_description="SGN-E370074 [TUS-26-P12]">
      <seq>aaggattcatacatcggtgtgtgatcgggcggctgcattggcggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaagaagggacagaattggaaatattgaaaaagatggaggttggtttggggattgaagagtatattccagatggtaaagcgagtaaaccattttgggcgcgtgggattgatatggtggggtatggtttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65180" stop="64362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64880" g_stop="64662" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E370074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64880" e_stop="64662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAA</genome_strand>
        <mrna_strand>AAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311377" ref_strand="+" ref_description="SGN-E311377 [cLEZ-18-F4]">
      <seq>tctcagtaatggctgagcaaggaagcgccgccgcagctccgtcgtctgagttgaaaagtcggccggccggaagcaccgagcacagctggtgcaaggcggttcccggtggcacaggtataacagtcttagctctactcttgtcaaaaccaccagacatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattcctactcttacatcattccctccacttctcatcttcaaatccagccgttcgatctctcatcaacggttcagattctccgacgcctcaaaacctccgatctcacctccgtctccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatcttcttcgccagcatttatcaattagaaaacgaaaaatcggtgttcgctttaaggattcatacatcggtgtgtgatcgggcggctgcattggcggtgctgaagaagttattgaagctggtgagttgtgagaaggaagatgaagaagggacagaattggaaatattgaaaaagatggaggttggtttggggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65670" stop="64438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65370" g_stop="64738" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E311377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65370" e_stop="64738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTG</genome_strand>
        <mrna_strand>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269714" ref_strand="+" ref_description="SGN-E269714 [cLEM-17-M16]">
      <seq>gctgagcaaggaagcgccgccgcagctccgtcgtctgagttgaaaagtcggccggccggaagcaccgagcacagctggtgcaaggcggttcccggtggcacaggtataacagtcttagctctactcttgtcaaaaccaccagacatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattcctactcttacatcattccctccacttctcatcttcaaatccagccgttcgatctctcatcaacggttcagattctccgacgcctcaaaacctccgatctcacctgcgtctccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatcttcttcgccagcatttatcaattagaaaacgaaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65659" stop="64593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65359" g_stop="64893" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E269714" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65359" e_stop="64893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATC</genome_strand>
        <mrna_strand>GCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTGCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208592" ref_strand="+" ref_description="SGN-E208592 [cLEC-39-N20]">
      <seq>atggctgagcaaggaagcgccgccgcagctccgtcgtctgagttgaaaagtcggccggccggaagcaccgagcacagctggtgcaaggcggtttccggtggcacaggtataacagtcttagctctactcttgtcaaaaccaccagacatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattgctactcttacatcattccctccacttctcatcttcaaatccagccgttcgatctctcatcaacggttcagattcttcgacgcctcaaaacctacgatctcacctccgtctccgattttcatctcatcctcgaacacgaaatcgaccacaactcatggatgaacaccggcacttcatcagattccgacacggatatctttttcgccagcatttatcaattagaaaacgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65662" stop="64595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65362" g_stop="64895" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E208592" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65362" e_stop="64895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAA</genome_strand>
        <mrna_strand>ATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTTCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTGCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTTCGACGCCTCAAAACCTACGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCGACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTTTTCGCCAGCATTTATCAATTAGAAAACGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354690" ref_strand="+" ref_description="SGN-E354690 [cLHT-5-L18]">
      <seq>aagcgccgccgcagctccgtcgtctgagttgaaaagtcggccggccggaagcaccgagcacagctggtgcaaggcggttctcggtggcacaggtataacagtcttagctctactcttatcaaaaccaccagacatttcacttctccaaaatgcccttcacaaactccaaaattccaatcctatcctcaaatctcaactccattacgaatcaagcacaaattcctactcttacatcattccctccacttctcgtcttcaaatccagccgttcgatctctcatcaacggttcagattctccgacgcctcaaaacctccgatctcacctccgtttccgattttcatctcatcctcgaacacgaaatcaaccacaactcatggataaacaccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="65648" stop="64658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65348" g_stop="64958" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E354690" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65348" e_stop="64958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGC</genome_strand>
        <mrna_strand>AAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCTCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTATCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCGTCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTTTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATAAACACCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264052" ref_strand="-" ref_description="SGN-E264052 [cLEG-64-A15]">
      <seq>acatcagaatcattgggtagatgttcctcctactcccggagctctcgtggtcaatataggagatattctacagcttataacgaatgacaagttcaaaagtgttgatcatagagtactggctaataaggtcggtccaagggtatcgttggcatgcttcttcatgacaaactttgtggcaacacaaaggctgtatggacctataaaggagctgatatcggaacagaatcctccaaactacagggaaacgacgattaaggagttcacaactcatttcaataacaaagggctggatggcacttccactctgttgcattttagactttagactaaattgttcaaataaggttttgtaatactatatatgtcaaactaagtatgctcattatgtaaccatcaataaattctactcatagtaagtaattttcatgattatgtttagattaaaaaaaaaaaaaaaaaaagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="67294" stop="1834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66994" g_stop="66922" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66921" i_stop="66843" i_length="79">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66842" g_stop="66465" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="451" r_length="378" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66464" i_stop="65483" i_length="982">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65482" g_stop="65471" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="463" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65470" i_stop="65377" i_length="94">
            <donor d_prob="0.956" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65376" g_stop="65372" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="468" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E264052" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264052" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66994" e_stop="66922"/>
          <exon e_start="66842" e_stop="66465"/>
          <exon e_start="65482" e_stop="65471"/>
          <exon e_start="65376" e_stop="65372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAGAATCATTGGGTAGATGTTCCTCCTACTCCCGGAGCTCTCGTGGTCAATATAGGAGATATTCTACAGGCAAGTAGTGTTACATTTAAACATATACCTGTATCAGAAACATACATTTCTTATCACTTATGAACTCGATCATTTTCAGCTTATAACGAATGACAAGTTCAAAAGTGTTGATCATAGAGTACTGGCTAATAAGGTCGGTCCAAGGGTATCGTTGGCATGCTTCTTCATGACAAACTTTGTGGCAACACAAAGGCTGTATGGACCTATAAAGGAGCTGATATCGGAACAGAATCCTCCAAACTACAGGGAAACGACGATTAAGGAGTTCACAACTCATTTCAATAACAAAGGGCTGGATGGCACTTCCACTCTGTTGCATTTTAGACTTTAGACTAAATTGTTCAAATAAGGTTTTGTAATACTATATATGTCAAACTAAGTATGCTCATTATGTAACCATCAATAAATTCTACTCATAGTAAGTAATTTTCATGATTATGTTTAGATTCATCGCTAAGTTTTTCGCTTCTACCTTTCTTAAGAATATTATTGCATGGGCGAATTTACGTATATACACGCGAGTGTATAAGCACTTGTTAATTTCAAAATAAAATCATACAAATATATGTGTATATAAATTGATCTCGTTTTTTTTTTTTTAACAAAAAAGAATCAAATTTGACATCATCATATCCCAATGCTTTGGTTGGTAAATGAGTCCAAAGTTTATAGTTGTCATGCTTTCTTCTTTTCTTACCCATTAACATTATATTTTAAAATTAAATTGATATTTTGTTTATTTTTTAAAATTTTCCATCAAGCTTAATATTATTGTATCTCCTTGCTCCGATAGATAAATGAATTTAAAACGGAAAACAAGATAAATATATTGTTGAACTATTTTAAATGATATACGAATATTCTTCGTTGTATTTTCAGGACATTGGTGCTGTTATTGTCTAAAAACTAGAGCATATATATCCTCCACTCTAACGGAAGACTAAATAGAGACACGTGACACAATCTTATCTATTGATAAATATCGAATCAGTAAATAAGATTATGACACGTGTGTTAGGATCGAATTCATACATACACACACTTGATGAATAAATAACACAAGAACTTTAGAGAGAAAGAGATGAGAGATCTAGAGAGAGAAAGAGAGAAGCCAATATTTCGTGGTAATACTCCGTGAGTAAACTTCTACGGCGTTGAGGTATATATATTAATAAATAAGAGTATATTTTAGTTACAGATAATATATGAAGAATAAATAGTAAAGCCTAAAATATATTAATCAGACTCTACAACCTAACAATGTGTATATCTATTAGTATAAAGTATATATATATATTCTAGTTTTTGAACGGCAAGAAAACTAATGTTCCAAAAGTATGAGGAATGTATCATTTATGATAGTTTAAAATATATTTATTTTTTTCTCATTTAAATAATCTCGAGATAATTTAATCTGAAAACCAAATCACGTGACATGGAAAAAAAAAAGAGTAATCAAACTTTTCTTAATCATTAATTTTATCACTTAAAGAATATGTATAAATAAGTGGTTAGGCTTCATTTGTACTTTTCATTCCCATTTAGCTAAT</genome_strand>
        <mrna_strand>ACATCAGAATCATTGGGTAGATGTTCCTCCTACTCCCGGAGCTCTCGTGGTCAATATAGGAGATATTCTACAG...............................................................................CTTATAACGAATGACAAGTTCAAAAGTGTTGATCATAGAGTACTGGCTAATAAGGTCGGTCCAAGGGTATCGTTGGCATGCTTCTTCATGACAAACTTTGTGGCAACACAAAGGCTGTATGGACCTATAAAGGAGCTGATATCGGAACAGAATCCTCCAAACTACAGGGAAACGACGATTAAGGAGTTCACAACTCATTTCAATAACAAAGGGCTGGATGGCACTTCCACTCTGTTGCATTTTAGACTTTAGACTAAATTGTTCAAATAAGGTTTTGTAATACTATATATGTCAAACTAAGTATGCTCATTATGTAACCATCAATAAATTCTACTCATAGTAAGTAATTTTCATGATTATGTTTAGATTAAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAGA..............................................................................................CTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344752" ref_strand="+" ref_description="SGN-E344752 [cTOF-21-F19]">
      <seq>ttttacttcaaatatcagctaagaaaaaaatggagttgatcaacacaactgaagtccaggttccaagagaagcaaagtatgacaggaaggctgaactacaagcttttgatgagacgaaaaccggtgttaagggactagtcgatacaggtatcactaaagtaccaagaatgtttgttcaaccgtcaaggattgaagattcaacaattcacagcaacaagaagttcagttttccaataattgatcttgatggtatcaaggaaaattcgatcaaacgaaagaacatagtccaggaagtcggtcaagcatccgagacttggggattctttcaagtgatcaatcatgggattcctagtcatcttctggaggaaatgaaagacggtgttctcagtttctttgaacaagataccgaggagaagaaacagtggtatacgcgagatttgacaaaagtgtttacgtttaacagcaatttcgacctgtttggagcaccagtaaccaactggagagacacttttactgctaccacagctcctatacctccaaaacctgaagaattaccttctgtttgcagggatgttctccttgagtacacaaaccaagtgatgaaattaggtgatactctatttgaaatactggctgaagctattggcctcgaaccaaatacctcaggacatggggttgtgccgaggggctaatggcgttaggccattattatccagcatgcccacaccagaactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="68265" stop="66773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67965" g_stop="67398" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67397" i_stop="67244" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67243" g_stop="67073" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="737" r_length="169" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E344752" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67965" e_stop="67398"/>
          <exon e_start="67243" e_stop="67073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACTTCAAATATCAGCTAAGAAAAAAATGGAGTTGATCAACACAACTGAAGTCCAGGTTCCAAGAGAAGCAAAGTATGACAGGAAGGCTGAACTACAAGCTTTTGATGAGACGAAAACCGGTGTTAAGGGACTAGTCGATACAGGTATCACTAAAGTACCAAGAATGTTTGTTCAACCGTCAAGGATTGAAGATTCAACAATTCACAGCAACAAGAAGTTCAGTTTTCCAATAATTGATCTTGATGGTATCAAGGAAAATTCGATCAAACGAAAGAACATAGTCCAGGAAGTCGGTCAAGCATCCGAGACTTGGGGATTCTTTCAAGTGATCAATCATGGGATTCCTAGTCATCTTCTGGAGGAAATGAAAGACGGTGTTCTCAGTTTCTTTGAACAAGATACCGAGGAGAAGAAACAGTGGTATACGCGAGATTTGACAAAAGTGTTTACGTTTAACAGCAATTTCGACCTGTTTGGAGCACCAGTAACCAACTGGAGAGACACTTTTACTGCTACCACAGCTCCTATACCTCCAAAACCTGAAGAATTACCTTCTGTTTGCAGGTATCATAAATTCTAATCTACAATCCTACCCTTCTATAACATCATTTATCTAGAATAGATTTTTCAATAGCATTCATATTCAGACAAATGACGTTGTTATAGAGAGGTTTGACTGTATTGTAATTTTATTTGCTTGTTCTGTATCTATGATAAGGGATGTTCTCCTTGAGTACACAAACCAAGTGATGAAATTAGGTGATACTCTATTTGAAATACTGGCTGAAGCTATTGGCCTCGAACCAAATCACCTCAAGGACAT-GGGTTGTGCCGAGGGGCTTATGGCGTTAGGCCATTATTATCCAGCATGCCCACAACCAGAACTAAC</genome_strand>
        <mrna_strand>TTTTACTTCAAATATCAGCTAAGAAAAAAATGGAGTTGATCAACACAACTGAAGTCCAGGTTCCAAGAGAAGCAAAGTATGACAGGAAGGCTGAACTACAAGCTTTTGATGAGACGAAAACCGGTGTTAAGGGACTAGTCGATACAGGTATCACTAAAGTACCAAGAATGTTTGTTCAACCGTCAAGGATTGAAGATTCAACAATTCACAGCAACAAGAAGTTCAGTTTTCCAATAATTGATCTTGATGGTATCAAGGAAAATTCGATCAAACGAAAGAACATAGTCCAGGAAGTCGGTCAAGCATCCGAGACTTGGGGATTCTTTCAAGTGATCAATCATGGGATTCCTAGTCATCTTCTGGAGGAAATGAAAGACGGTGTTCTCAGTTTCTTTGAACAAGATACCGAGGAGAAGAAACAGTGGTATACGCGAGATTTGACAAAAGTGTTTACGTTTAACAGCAATTTCGACCTGTTTGGAGCACCAGTAACCAACTGGAGAGACACTTTTACTGCTACCACAGCTCCTATACCTCCAAAACCTGAAGAATTACCTTCTGTTTGCAG..........................................................................................................................................................GGATGTTCTCCTTGAGTACACAAACCAAGTGATGAAATTAGGTGATACTCTATTTGAAATACTGGCTGAAGCTATTGGCCTCGAACCAAAT-ACCTC-AGGACATGGGGTTGTGCCGAGGGGCTAATGGCGTTAGGCCATTATTATCCAGCATGCCCAC-ACCAGAACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705744" ref_strand="+" ref_description="SGN-E705744 [FA28AB01]">
      <seq>cgcttcaagatatggatagtcacgatcaaatcaatcgaaaaaaagtcattgagaaagtccgcgatgcatcagagacatggggtttctttcaagtgatcaatcatggcgttccgtgtgatgttatggaagaaatgatacgaggtgtttgtagttttcatgaacaagatactgatatcaagaagcaatggtatacgcgagagttgactaaaagagtagtttataacagtaactttgatttgtataatgcaccagcaactaattggagggatacttttttctgcattatggctcctaatcctcctagtcctgaagaattgcctccaatctgtagggatatcattgttaaatactctgaggaagtgaagaaactcgggcgttctttgtttgaactattagcagaagcacttggactcaatagaaactatctgaatgaaatggattgtggtgaaggactttcagttgtatgtcactattatccagcttgtccagaaccagaactaacattaggtgctagtaaacacgctgatgatggattcttgactttgcttcttcaagaccatatagggggattgcaagttcttcatcgaaatcattgggttgatgtccctcctacccctggtgctcttgttgtaaatattgcagatcttctgcagttaatatcaaatgacaagtttaaaagcgttgaacatcgtgtactggcaaatcgtgttggtccaaggatatcgatagcatgcttcttctccacattttttctagaagcgtcaagactttatggtcctattaaggagttgttatcagaagaaaatccgtccaaatacagagaaacaacaattcaggaatatgctgcctattttactgcaaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="71925" stop="69489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71627" g_stop="71297" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71296" i_stop="70965" i_length="332">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70964" g_stop="70643" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="653" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70642" i_stop="70002" i_length="641">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70001" g_stop="69789" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="866" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E705744" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71627" e_stop="71297"/>
          <exon e_start="70964" e_stop="70643"/>
          <exon e_start="70001" e_stop="69789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAGGTATGTCATTTATACGACACGTGGTGTAAAAGGGGTTCGATTGAATCCTCTTCGTTGAAAAAGTATAGCGATATGTATGAAACTCGTTGAATCCCCTTGACAGAAGACCAGTAGCTAAGCTAGCAATTCTGCTAAGGGGTGTTCAAGATTTTGTATATGTATAATATAAAATGACTTTTGGATTGAGAGTGTTTAACTAACTGCCCTGACTCCCCTGCAGATATAAGTTTGAATCCTAGTTGTGACACACTATCATTTCTTGAATCCCCGTGTTAGAATTTCTGATTCCGATACTGATATTGTTTAGTGTTTTCTTTATGATGTGGTAAAAGGGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAGGTATGTCTTCTCACCTATCTGTACTGAAAATGAGTAGTGATCTTTAAAATTCATGCAAGTTGAATATTGTAAATGAGTAGCTCGTTGGCTACACTTTGAGCTCGCGAACCACTCTCATGCTTGTAGCTATAGTAGGTGAGACCCCAATATCATTGAGGGCCTTGTCATATTCATATGATGTACATATATGATTTTAAGGTATATCGGAGCCTTGCCCTGACACCTATACAGTTCATGTCATATGTTAGAGGCTCCATAGACTAGTATGTACCGGTCATGTGTACACTTGAGTTACATCACTATTTCATAACATGCACTGATCTCTAATTTCACACACACACACACACGAGCGTATGTTGTGTGATTATGTCAAAAGAATTATGTTCAAATGAACCAACATCAAGTCGTTAGGTCCATCACTGGACAACTTGTCCAGTGCATGAAACATTCCATGTTTATGCGAAGTTCAGGGAAGTGCCACACCTCAAGAGGGTGTAATGTAGGCAGCCTACCCTGACACAAACATCAGACGTCAAAACAACGCACAATGATTAATTTGAATTATCAGATATTACTACACTTGAAGGTTATTCATGCAGAGAAAACAAGTAGTAATGTTGTTTTGTCATGAAAATGTACAGTTAATATCAAATGACAAGTTTAAAAGCGTTGAACATCGTGTACTGGCAAATCGTGTTGGTCCAAGGATATCGATAGCATGCTTCTTCTCCACATTTTTTCTAGAAGCGTCAAGACTTTATGGTCCTATTAAGGAGTTGTTATCAGAAGAAAATCCGTCAAAATACAGAGAAACAACAATTCAGGAATATGCTGCCTATTTTACTGCAAAGGGA</genome_strand>
        <mrna_strand>CGCTTCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG............................................................................................................................................................................................................................................................................................................................................GGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATATCAAATGACAAGTTTAAAAGCGTTGAACATCGTGTACTGGCAAATCGTGTTGGTCCAAGGATATCGATAGCATGCTTCTTCTCCACATTTTTTCTAGAAGCGTCAAGACTTTATGGTCCTATTAAGGAGTTGTTATCAGAAGAAAATCCGTCCAAATACAGAGAAACAACAATTCAGGAATATGCTGCCTATTTTACTGCAAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705086" ref_strand="+" ref_description="SGN-E705086 [FA26AE04]">
      <seq>aaaatctggtgtcaaaggacttgttgatgcaggagtaagtaaagtccctcagatattcatttcacctccagatacatactcaaattccaacacaggacagttcatttttccagttatagacctccaagatatggatagtcacgatcaaatcaatcgaaaaaaagtcattgagaaagtccgcgatgcatcagagacatggggtttctttcaagtgatcaatcatggcgttccgtgtgatgttatggaagaaatgatacgaggtgtttgtagttttcatgaacaagatactgatatcaagaagcaatggtatacgcgagagttgactaaaagagtagtttataacagtaactttgatttgtataatgcaccagcaactaattggagggatacttttttctgcattatggctcctaatcctcctagtcctgaagaattgcctccaatctgtagggatatcattgttaaatactctgaggaagtgaagaaactcgggcgttctttgtttgaactattagcagaagcacttggactcaatagaaactatctgaatgaaatggattgtggtgaaggactttcagttgtatgtcactattatccagcttgtccagaaccagaactaacattaggtgctagtaaacacgctgatgatggattcttgactttgcttcttcaagaccatatagggggattgcaagttcttcatcgaaatcattgggttgatgtccctcctacccctggtgctcttgttgtaaatattgcagatcttctgcagttaatatcaaatgacaagtttaaaagcgttgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72046" stop="69667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71746" g_stop="71297" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71296" i_stop="70965" i_length="332">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70964" g_stop="70643" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="772" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70642" i_stop="70002" i_length="641">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70001" g_stop="69967" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="807" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E705086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71746" e_stop="71297"/>
          <exon e_start="70964" e_stop="70643"/>
          <exon e_start="70001" e_stop="69967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAGGTATGTCATTTATACGACACGTGGTGTAAAAGGGGTTCGATTGAATCCTCTTCGTTGAAAAAGTATAGCGATATGTATGAAACTCGTTGAATCCCCTTGACAGAAGACCAGTAGCTAAGCTAGCAATTCTGCTAAGGGGTGTTCAAGATTTTGTATATGTATAATATAAAATGACTTTTGGATTGAGAGTGTTTAACTAACTGCCCTGACTCCCCTGCAGATATAAGTTTGAATCCTAGTTGTGACACACTATCATTTCTTGAATCCCCGTGTTAGAATTTCTGATTCCGATACTGATATTGTTTAGTGTTTTCTTTATGATGTGGTAAAAGGGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAGGTATGTCTTCTCACCTATCTGTACTGAAAATGAGTAGTGATCTTTAAAATTCATGCAAGTTGAATATTGTAAATGAGTAGCTCGTTGGCTACACTTTGAGCTCGCGAACCACTCTCATGCTTGTAGCTATAGTAGGTGAGACCCCAATATCATTGAGGGCCTTGTCATATTCATATGATGTACATATATGATTTTAAGGTATATCGGAGCCTTGCCCTGACACCTATACAGTTCATGTCATATGTTAGAGGCTCCATAGACTAGTATGTACCGGTCATGTGTACACTTGAGTTACATCACTATTTCATAACATGCACTGATCTCTAATTTCACACACACACACACACGAGCGTATGTTGTGTGATTATGTCAAAAGAATTATGTTCAAATGAACCAACATCAAGTCGTTAGGTCCATCACTGGACAACTTGTCCAGTGCATGAAACATTCCATGTTTATGCGAAGTTCAGGGAAGTGCCACACCTCAAGAGGGTGTAATGTAGGCAGCCTACCCTGACACAAACATCAGACGTCAAAACAACGCACAATGATTAATTTGAATTATCAGATATTACTACACTTGAAGGTTATTCATGCAGAGAAAACAAGTAGTAATGTTGTTTTGTCATGAAAATGTACAGTTAATATCAAATGACAAGTTTAAAAGCGTTGAACA</genome_strand>
        <mrna_strand>AAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG............................................................................................................................................................................................................................................................................................................................................GGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATATCAAATGACAAGTTTAAAAGCGTTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708905" ref_strand="+" ref_description="SGN-E708905 [FA42AD08]">
      <seq>cattaatcaaaacatgatagaaaaagtgagttaaaagcctttgatgacacaaaatctggtgtcaaaggacttgttgatgcaggagtaagtaaagtccctcagatattcatttcacctccagatacatactcaaattccaacacaggacagttcatttttccagttatagacctccaagatatggatagtcacgatcaaatcaatcgaaaaaaagtcattgagaaagtccgcgatgcatcagagacatggggtttctttcaagtgatcaatcatggcgttccgtgtgatgttatggaagaaatgatacgaggtgtttgtagttttcatgaacaagatactgatatcaagaagcaatggtatacgcgagagttgactaaaagagtagtttataacagtaactttgatttgtataatgcaccagcaactaattggagggatacttttttctgcattatggctcctaatcctcctagtcctgaagaattgcctccaatctgtagggatatcattgttaaatactctgaggaagtgaagaaactcgggcgttctttgtttgaactattagcagaagcacttggactcaatagaaactatctgaatgaaatggattgtggtgaaggactttcagttgtatgtcactattatccagcttgtccagaaccagaactaacattaggtgctagtaaacacgctgatgatggattcttgactttgcttcttcaagaccatatagggggattgcaagttcttcatcgaaatcattgggttgatgtccctcctacccctggtgctcttgttgtaaatattgcagatcttctgcaggtatgtcttctcacctatctgtactgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72095" stop="70313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71796" g_stop="71297" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71296" i_stop="70965" i_length="332">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70964" g_stop="70613" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="852" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E708905" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71796" e_stop="71297"/>
          <exon e_start="70964" e_stop="70613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAGGTATGTCATTTATACGACACGTGGTGTAAAAGGGGTTCGATTGAATCCTCTTCGTTGAAAAAGTATAGCGATATGTATGAAACTCGTTGAATCCCCTTGACAGAAGACCAGTAGCTAAGCTAGCAATTCTGCTAAGGGGTGTTCAAGATTTTGTATATGTATAATATAAAATGACTTTTGGATTGAGAGTGTTTAACTAACTGCCCTGACTCCCCTGCAGATATAAGTTTGAATCCTAGTTGTGACACACTATCATTTCTTGAATCCCCGTGTTAGAATTTCTGATTCCGATACTGATATTGTTTAGTGTTTTCTTTATGATGTGGTAAAAGGGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAGGTATGTCTTCTCACCTATCTGTACTGAAAA</genome_strand>
        <mrna_strand>CATTAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG............................................................................................................................................................................................................................................................................................................................................GGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAGGTATGTCTTCTCACCTATCTGTACTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308685" ref_strand="+" ref_description="SGN-E308685 [cLEZ-13-K9]">
      <seq>atgaatcaaaacatgatagaaaaagtgagttaaaagcctttgatgacacaaaatctggtgtcaaaggacttgttgatgcaggagtaagtaaagtccctcagatattcatttcacctccagatacatactcaaattccaacacaggacagttcatttttccagttatagacctccaagatatggatagtcacgatcaaatcaatcgaaaaaaagtcattgagaaagtccgcgatgcatcagagacatggggtttctttcaagtgatcaatcatggcgttccgtgtgatgttatggaagaaatgatacgaggtgtttgtagttttcatgaacaagatactgatatcaagaagcaatggtatacgcgagagttgactaaaagagtagtttataacagtaactttgatttgtataatgcaccagcaactaattggagggatacttttttctgcattatggctcctaatcctcctagtcctgaagaattgcctccaatctgtagggatatcattgttaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72095" stop="70646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71795" g_stop="71297" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71296" i_stop="70965" i_length="332">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70964" g_stop="70946" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="518" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E308685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71795" e_stop="71297"/>
          <exon e_start="70964" e_stop="70946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAGGTATGTCATTTATACGACACGTGGTGTAAAAGGGGTTCGATTGAATCCTCTTCGTTGAAAAAGTATAGCGATATGTATGAAACTCGTTGAATCCCCTTGACAGAAGACCAGTAGCTAAGCTAGCAATTCTGCTAAGGGGTGTTCAAGATTTTGTATATGTATAATATAAAATGACTTTTGGATTGAGAGTGTTTAACTAACTGCCCTGACTCCCCTGCAGATATAAGTTTGAATCCTAGTTGTGACACACTATCATTTCTTGAATCCCCGTGTTAGAATTTCTGATTCCGATACTGATATTGTTTAGTGTTTTCTTTATGATGTGGTAAAAGGGATATCATTGTTAAATAC</genome_strand>
        <mrna_strand>ATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG............................................................................................................................................................................................................................................................................................................................................GGATATCATTGTTAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293583" ref_strand="+" ref_description="SGN-E293583 [cLET-15-N11]">
      <seq>ctgttctgatgggaggtaacatttagtggacgcaagctaaccgagacatcacttttgttaaagggaagagtactatatcctattgatgaataatagaacaagatatatcaagaaaatggatacaaatgaatcaaaacatgatagaaaaagtgagttaaaagcctttgatgacacaaaatctggtgtcaaaggacttgttgatgcaggagtaagtaaagtccctcagatattcatttcacctccagatacatactcaaattccaacacaggacagttcatttttccagttatagacctccaagatatggatagtcacgatcaaatcaatcgaaaaaaagtcattgagaaagtccgcgatgcatcagagacatggggtttctttcaagtgatcaatcatggcgttccgtgtgatgttatggaagaaatgatacgaagtgtttgtagttttcatgaacaagatactgatatcaagaagcaatggtatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72220" stop="71134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71920" g_stop="71434" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E293583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71920" e_stop="71434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACATCACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATCAAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACG</genome_strand>
        <mrna_strand>CTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACATCACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATCAAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAAGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293584" ref_strand="+" ref_description="SGN-E293584 [cLET-15-N11](-)">
      <seq>cgtataccattgcttcttgatatcagtatcttgttcatgaaaactacaaacacttcgtatcatttcttccataacatcacacggaacgccatgattgatcacttgaaagaaaccccatgtctctgatgcatcgcggactttctcaatgactttttttcgattgatttgatcgtgactatccatatcttggaggtctataactggaaaaatgaactgtcctgtgttggaatttgagtatgtatctggaggtgaaatgaatatctgagggactttacttactcctgcatcaacaagtcctttgacaccagattttgtgtcatcaaaggcttttaactcactttttctatcatgttttgattcatttgtatccattttcttgatatatcttgttctattattcatcaataggatatagtactcttccctttaacaaaagtgatgtctcggttagcttgcgtccactaaatgttacctcccatcagaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="71134" stop="72220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71434" g_stop="71920" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E293584" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71434" e_stop="71920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTATACCATTGCTTCTTGATATCAGTATCTTGTTCATGAAAACTACAAACACCTCGTATCATTTCTTCCATAACATCACACGGAACGCCATGATTGATCACTTGAAAGAAACCCCATGTCTCTGATGCATCGCGGACTTTCTCAATGACTTTTTTTCGATTGATTTGATCGTGACTATCCATATCTTGGAGGTCTATAACTGGAAAAATGAACTGTCCTGTGTTGGAATTTGAGTATGTATCTGGAGGTGAAATGAATATCTGAGGGACTTTACTTACTCCTGCATCAACAAGTCCTTTGACACCAGATTTTGTGTCATCAAAGGCTTTTAACTCACTTTTTCTATCATGTTTTGATTCATTTGTATCCATTTTCTTGATATATCTTGTTCTATTATTCATCAATAGGATATAGTACTCTTCCCTTTAACAAAAGTGATGTCTCGGTTAGCTTGCGTCCACTAAATGTTACCTCCCATCAGAACAG</genome_strand>
        <mrna_strand>CGTATACCATTGCTTCTTGATATCAGTATCTTGTTCATGAAAACTACAAACACTTCGTATCATTTCTTCCATAACATCACACGGAACGCCATGATTGATCACTTGAAAGAAACCCCATGTCTCTGATGCATCGCGGACTTTCTCAATGACTTTTTTTCGATTGATTTGATCGTGACTATCCATATCTTGGAGGTCTATAACTGGAAAAATGAACTGTCCTGTGTTGGAATTTGAGTATGTATCTGGAGGTGAAATGAATATCTGAGGGACTTTACTTACTCCTGCATCAACAAGTCCTTTGACACCAGATTTTGTGTCATCAAAGGCTTTTAACTCACTTTTTCTATCATGTTTTGATTCATTTGTATCCATTTTCTTGATATATCTTGTTCTATTATTCATCAATAGGATATAGTACTCTTCCCTTTAACAAAAGTGATGTCTCGGTTAGCTTGCGTCCACTAAATGTTACCTCCCATCAGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300999" ref_strand="+" ref_description="SGN-E300999 [cLEW-22-C5]">
      <seq>tcggttggtgtctgttctgatgggaggtaacatttagtggacgcaagctaaccgagacatcacttttgttaaagggaagagtactatatcctattgatgaataatagaacaagatatatcaagaaaatggatacaaatgaatcaaaacatgatagaaaaagtgagttaaaagcctttgatgacacaaaatctggtgtcaaaggacttgttgatgcaggagtaagtaaagtccctcagatattcatttcacctccagatacatactcaaattccaacacaggacagttcatttttccagttatagacctccaagatatggatagtcacgatcaaatcaatcgaaaaaaagtcattgagaaagtccgcgatgcatcagagacatggggtttctttcaagtgatcaatcatggcgttccgtgtgatgttatggaagaaatgatacgaggtgtttgtagttttcatgaacaagatactgatatcaagaagcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72231" stop="71140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71931" g_stop="71440" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E300999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71931" e_stop="71440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTGGTGTCTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACATCACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATCAAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGG</genome_strand>
        <mrna_strand>TCGGTTGGTGTCTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACATCACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATCAAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368375" ref_strand="+" ref_description="SGN-E368375 [TUS-23-J13]">
      <seq>tcgtgccgccagttcacactgcactcgccggaatctctcacggcggcgatctctttctccggaggatttaaagtcctaagtctcttcatttatatcttcaattcacgaattccctttggttagtgttcatgagccataaacgctactttttattttttgatttggtgaaatgtgacttttgaattggatctatgtacatcttgaaaatcctcagattcaatttttcttagctctgtgtgaatatttacgtcgctgtgcttcggctacctgtagaaatgataatttagagtcaaaggaaaatatcataagtttggcctcttcgactgttagagcgatttgtctgctgtgcttttggttcttcttttaatctttgcttctagctggaaattttttctttttttctgcttcttcgatatgttttggaaactgaatttggggttgtttttttgggtctaaagccactgttgagctgcccttgtgtgttagcagttagtacattatctggaattgattgttttcgtcttttgcagtctgctgcaatagcatcaaaggatacttctgtgctttctttgatagatgaacaactagttttcctcgtaaaaatgatgtaaaggtttaatttgaattcagtttcattcgttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72483" stop="73725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72782" g_stop="73425" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E368375" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72782" e_stop="73425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGGCCAGTTCACACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGAATTGATTGTTTTCGTC-TTTGCAGTCTGCTGCAATAGCATCAAAGGATACTTCTGTGCTTCCTTTGATAGATGAACAACTAGTTTTCCTCGTAAAAATGATGTAAAGGTTTAATTTGAATTCAGTTTCATTCGTTCATT</genome_strand>
        <mrna_strand>TCGTGCCGCCAGTTCACACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGAATTGATTGTTTTCGTCTTTTGCAGTCTGCTGCAATAGCATCAAAGGATACTTCTGTGCTTTCTTTGATAGATGAACAACTAGTTTTCCTCGTAAAAATGATGTAAAGGTTTAATTTGAATTCAGTTTCATTCGTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246120" ref_strand="+" ref_description="SGN-E246120 [cLEF-40-E22]">
      <seq>tcgtgccgccagttcacactgcactcgccggaatctctcacggcggcgatctctttctccggaggatttaaagtcctaagtctcttcatttatatcttcaattcacgaattccctttggttagtgttcatgagccataaacgctactttttattttttgatttggtgaaatgtgacttttgaattggatctatgtacatcttgaaaatcctcagattcaatttttcttagctctgtgtgaatatttacgtcgctgtgcttcggctacctgtagaaatgataatttagagtcaaaggaaaatatcataagtttggcctcttcgactgttagagcggtttgtctgctgtgcttttggttcttcttttaatctttgcttctagctggaaattttttctttttttctgcttcttcgatatgttttggaaactgaatttggggttgtttttttgggtctaaagccactgttgagctgcccttgtgtgttagcagttagtacattatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72483" stop="73587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72782" g_stop="73287" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E246120" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72782" e_stop="73287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGGCCAGTTCACACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGA</genome_strand>
        <mrna_strand>TCGTGCCGCCAGTTCACACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGGTTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697226" ref_strand="+" ref_description="SGN-E697226 [FA01AG05]">
      <seq>actgcactcgccggaatctctcacggcggcgatctctttctccggaggatttaaagtcctaagtctcttcatttatatcttcaattcacgaattcccttggccaggagtgagtgtaaagcacaagttttaccaagtggttgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgataccttagccttgaggctattaccccggttagaacccttccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72499" stop="74244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72799" g_stop="72899" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72900" i_stop="73763" i_length="864">
            <donor d_prob="0.604" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73764" g_stop="73944" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="282" r_length="181" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E697226" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72799" e_stop="72899"/>
          <exon e_start="73764" e_stop="73944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGAATTGATTGTTTTCGTCTTTGCAGTCTGCTGCAATAGCATCAAAGGATACTTCTGTGCTTCCTTTGATAGATGAACAACTAGTTTTCCTCGTAAAAATGATGTAAAGGTTTAATTTGAATTCAGTTTCATTCGTTCATTGTCGTAGTTGTTATCTGTATATCTTTTGTAAATTCTTTTCGTTGTAAATTAAAATGTCACATTTGCCTTCTTTGTTATTATTGACGATGACCACTGGCCTGTTATCCATCTTTGGTGCGTTGTGTTGCGTTTATAATACACTGATGATTTTGTCAATCTAAAGTCATATATGAAAGCTTCATTTTAGGAACTTTTACGAGTGTCCGTTCGTAAACTAAAACGAATGGAAGTTTTAGTTTTTGAGGAATTTATGTGTATGTGTCTATTGATAGATAGGGTGATTGGAGTGTATTTTTCGTTTCTATTGTATGAACTGAATGTCGAATTTTCTTTTCAAGGCAGGAGTGAGTGTAAAGCACAAGTTTTACCAAGTGGTTGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAAC</genome_strand>
        <mrna_strand>ACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGTGAGTGTAAAGCACAAGTTTTACCAAGTGGTTGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATACCTTAGCCTTGAGGCTATTACCCCGGTTAGAACCCTTCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321546" ref_strand="+" ref_description="SGN-E321546 [cTOB-25-C23]">
      <seq>tctcacggcggcgatctctttctccggaggatttaaagtcctaagtctcttcatttatatcttcaattcacgaattccctttggcaggagtgagtgtaaagcacaagttttaccaagtggttgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaagttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="72517" stop="74621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72817" g_stop="72899" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72900" i_stop="73763" i_length="864">
            <donor d_prob="0.604" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73764" g_stop="74321" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="640" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E321546" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72817" e_stop="72899"/>
          <exon e_start="73764" e_stop="74321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGAATTGATTGTTTTCGTCTTTGCAGTCTGCTGCAATAGCATCAAAGGATACTTCTGTGCTTCCTTTGATAGATGAACAACTAGTTTTCCTCGTAAAAATGATGTAAAGGTTTAATTTGAATTCAGTTTCATTCGTTCATTGTCGTAGTTGTTATCTGTATATCTTTTGTAAATTCTTTTCGTTGTAAATTAAAATGTCACATTTGCCTTCTTTGTTATTATTGACGATGACCACTGGCCTGTTATCCATCTTTGGTGCGTTGTGTTGCGTTTATAATACACTGATGATTTTGTCAATCTAAAGTCATATATGAAAGCTTCATTTTAGGAACTTTTACGAGTGTCCGTTCGTAAACTAAAACGAATGGAAGTTTTAGTTTTTGAGGAATTTATGTGTATGTGTCTATTGATAGATAGGGTGATTGGAGTGTATTTTTCGTTTCTATTGTATGAACTGAATGTCGAATTTTCTTTTCAAGGCAGGAGTGAGTGTAAAGCACAAGTTTTACCAAGTGGTTGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTG</genome_strand>
        <mrna_strand>TCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGTGAGTGTAAAGCACAAGTTTTACCAAGTGGTTGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAA-GTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369987" ref_strand="+" ref_description="SGN-E369987 [TUS-26-N5]">
      <seq>tgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaggaagccaaggaccttgtcgaaaaggttcctgctatacttaagncaggagtaaccaaagaggaagctaatgaaataatagaaaagatcaaagctgttggaggagtcgccgttatggagtaacaacaatctctgttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73502" stop="74814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73802" g_stop="74514" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E369987" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73802" e_stop="74514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTT</genome_strand>
        <mrna_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGNCAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262560" ref_strand="+" ref_description="SGN-E262560 [cLEG-63-G8]">
      <seq>tgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaagagccaaggacccttgtcgaaaggttcctgctatacttaagcaaggagtaaccaaagaggaagctatggaataatagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73502" stop="74758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73802" g_stop="74458" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E262560" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73802" e_stop="74458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGA-CCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAG</genome_strand>
        <mrna_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAAG-AGCCAAGGACCCTTGTCG-AAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCT-ATGGAATAATAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254785" ref_strand="+" ref_description="SGN-E254785 [cLEG-33-A22]">
      <seq>tgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73502" stop="74626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73802" g_stop="74326" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E254785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73802" e_stop="74326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAA</genome_strand>
        <mrna_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259547" ref_strand="+" ref_description="SGN-E259547 [cLEG-42-L19]">
      <seq>tgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73502" stop="74603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73802" g_stop="74303" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E259547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73802" e_stop="74303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAG</genome_strand>
        <mrna_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260421" ref_strand="+" ref_description="SGN-E260421 [cLEG-66-A17]">
      <seq>cgaagtggaaattatccgagttcttttgcattagcacaacacgcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaagcaccctactttgaaaccaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73503" stop="74501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73802" g_stop="74201" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E260421" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73802" e_stop="74201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTT</genome_strand>
        <mrna_strand>CGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAAGCACCCTACTTTGAAACCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281948" ref_strand="+" ref_description="SGN-E281948 [cLES-2-L24]">
      <seq>gcgtatgaaattctgatcaagctaacatcatttgcaattcattgcttggaaagtgatatcttaagcatgaagctcatagcacggttaagacccatccaaacctgtacagctcttcgtgaaattatagggcctctgcagtctcgttcgtttcaacctgattttgttcccagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73544" stop="74538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73844" g_stop="74238" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E281948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73844" e_stop="74238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGC</genome_strand>
        <mrna_strand>GCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259228" ref_strand="+" ref_description="SGN-E259228 [cLEG-43-H21]">
      <seq>acggagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaggaagccaaggaccttgtcgaaaaggttcctgctatacttaagcaaggagtaaccaaagaggaagctaatgaaataatagaaaagatcaaagctgttggaggagtcgccgttatggagtaacaacaatctctgttggatttagcaggttccctcatcctgcatttcttcttttttcacaacggaacatgccaaaattaacataatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73712" stop="74883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74008" g_stop="74583" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E259228" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74008" e_stop="74583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTC</genome_strand>
        <mrna_strand>ACGGAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258766" ref_strand="+" ref_description="SGN-E258766 [cLEG-50-G12]">
      <seq>acggagagatcctaatgtcaagcccataaggtacaaatatcctgctgcctatgatccatatggcccgagacccccaccatcagacaagatagttcagcttgctgaacgtattgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaggaagccaaggaccttgtcgaaaaggttcctgctatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73712" stop="74713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74008" g_stop="74413" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E258766" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74008" e_stop="74413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTT</genome_strand>
        <mrna_strand>ACGGAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353860" ref_strand="+" ref_description="SGN-E353860 [cTOS-10-L16]">
      <seq>attgctgctttagccccagaagaacgtagacaaattggtcctttactcagggagatactaaggcaccctactttgaaaccaatttcagtagaaggcatggatttgggtgcaatgggaggagcaggtggtggaccggcaaaggctgaggagaagaaggttgagaaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaggaagccaaggaccttgtcgaaaaggttcctgctatacttaagcaaggagtaaccaaagaggaagctaatgaaataatagaaaagatcaaagctgttggaggagtcgccgttatggagtaacaacaatctctgttggatttagcaggttccctcatcctgcatttcttcttttttcacaacggaacatgccaaaattaacataatttctctttgttggatttagtttcttgggttaggacgatcacgttttgtttaataggtttcgtgctttttacagctttgaataggcatgttgattacaatattttgtatctgatcttgctgctagactgttaagaattcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73817" stop="75023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74117" g_stop="74727" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E353860" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74117" e_stop="74727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAATAATCTC</genome_strand>
        <mrna_strand>ATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292488" ref_strand="+" ref_description="SGN-E292488 [cLET-16-O18]">
      <seq>aaaacagcatttgacgtgaagttagagaaatttgatgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaggaagccaaggaccttgtcgaaaaggttcctgctatacttaagcaaggagtaaccaaagaggaagctaatgaaataatagaaaagatcaaagctgttggaggagtcgccgttatggagtaacaacaatctctgttggatttagcaggttccctcatcctgcatttcttcttttttcacaacggaacatgccaaaattaacataatttctctttgttggatttagtttcttgggttaggacgatcacgttttgtttaataggtttcgtgctttttacagctttgaataggcatgttgattacaatattttgtatctgatcttgctgctagactgttaagaattcgaaataatctcgtggaattaatttaggtgcacttgagcttgcccctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="73979" stop="75066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74279" g_stop="74766" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E292488" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74279" e_stop="74766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAATAATCTCGTGGAATTAATTTAGGTGCACTTGAGCTTGCCCCTAACA</genome_strand>
        <mrna_strand>AAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAATAATCTCGTGGAATTAATTTAGGTGCACTTGAGCTTGCCCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369986" ref_strand="+" ref_description="SGN-E369986 [TUS-26-N5](-)">
      <seq>tgcagctgcgaaaatcaaggtgatcaaagaggttagatccttcacgagtctaggtctgaaggaagccaaggaccttgtcgaaaaggttcctgctatacttaagcaaggagtaaccaaagaggaagctaatgaaataatagaaaagatcaaagctgttggaggagtcgccgttatggagtaacaacaatctctgttggatttagcaggttccctcatcctgcatttcttcttttttcacaacggaacatgccaaaattaacataatttctctttgttggatttagtttcttgggttaggacgatcacgttttgtttaataggtttcgtgctttttacagctttgaataggcatgttgattacaatattttgtatctgatcttgctgctagactgttaagaattcgaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="74014" stop="75023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74314" g_stop="74722" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="419"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E369986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74314" e_stop="74722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAATA</genome_strand>
        <mrna_strand>TGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="74914" stop="75950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75214" g_stop="75630" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75214" e_stop="75630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGCATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTATTTTTTGTTCTTTAAACTAAGGAATGTAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACTCCTAAATATTTTTTTT-AAAAAAAA-TAGAACTAATAAATATAAATTTAAAACTAATCTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCTATTTTGTAACGGCAGGGATATATGTGAGCCGTTTGTATAATGGTAAGGGTATATATGTGCCACTTTTATAACGAGGG-TATATCAGCTC-CAATGACAAAGTTGAGG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256254" ref_strand="+" ref_description="SGN-E256254 [cLEG-37-N1]">
      <seq>aacaaccctgccgcaagtcctggaattgatttaactgtcacagttcttacaactgggttctggcctagttataaatcttctgatttgtgtctccctgtggaaatggtgaagtgtgtagaagtcttcaaggaattctatcagacaaaaacgaaacacaggaaattgacatggatttattcattgggtacgtgtaacatcaacgggaagtttgattcaaaaaccattgaactgattctgggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttgatcagattgcttcagtccctttcatgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcttcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctcctgtggatgaaaggaaaaaggtagtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcgtgcgcattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="78949" stop="77797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78648" g_stop="78097" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="564" r_length="552" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E256254" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78648" e_stop="78097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGTACTGGAATTGATCTAACTGTCACAGTACTTACAAGTGGGTTCTGGCCTAGCTATAAATCTTGTGATTTGAGTCTACCTGTCGAGATGGCTAAGTGTGTACAAGTCTTCAACGAATTCTATCAGACAACAACGAAACACAGGAAACTGACATGGATTTATTCATTGGGTACGTGTAACGTCATTGGGAAGTTTGATTCAAAAACCATTGAATTGATTCTGGGAACCTATCAGGCTGCTGTTCTGTCATTGTTTAATTCGTCAGATAGATTGAGTTACTCGGAAATCAAAAGTCAGTTAAATTTAGCTGATGATGACTTGATCAGATTGCTTCAATCTCTTTCATGTGCTAAGTATAAAATTCTGATTAAAGATCCTAGCAATGCAACTGTTACATCATCTGATCATTTCGAGTTCAACTCCAAGTTCACTGACAGGATGAGACGGGTTAGGGTACCGTTACCTCTTGTGGATGAAAGGAAAAAGGTGGTGGAGGATGTAGGCAAAGATAGACGTTATGCAATCGATGCATGTATAGTACGTATTATG</genome_strand>
        <mrna_strand>GCAAGTCCTGGAATTGATTTAACTGTCACAGTTCTTACAACTGGGTTCTGGCCTAGTTATAAATCTTCTGATTTGTGTCTCCCTGTGGAAATGGTGAAGTGTGTAGAAGTCTTCAAGGAATTCTATCAGACAAAAACGAAACACAGGAAATTGACATGGATTTATTCATTGGGTACGTGTAACATCAACGGGAAGTTTGATTCAAAAACCATTGAACTGATTCTGGGAACTTATCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTCCCATTACCTCCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCGTGCGCATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235645" ref_strand="+" ref_description="SGN-E235645 [cLED-15-A12]">
      <seq>ggaacttatcaggctgctgttttgttattgtttaattcttcagatagattgagttactcagaaatcaagagtcagttaaatttggctgatgatgacttgatcagattgcttcagtccctttcatgtgccaagtataaaattctgatcaaggaacctagcaatagaactgtttcttcttctgatcattttgagttcaactccaagttcactgacaggatgaggcggattagggtcccattacctgctgtggatgaaaggaaaaaggtagtcgaggatgtagacaaagatagacgttatgcaattgatgcctgtatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="78723" stop="77808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78423" g_stop="78108" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E235645" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78423" e_stop="78108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCTATCAGGCTGCTGTTCTGTCATTGTTTAATTCGTCAGATAGATTGAGTTACTCGGAAATCAAAAGTCAGTTAAATTTAGCTGATGATGACTTGATCAGATTGCTTCAATCTCTTTCATGTGCTAAGTATAAAATTCTGATTAAAGATCCTAGCAATGCAACTGTTACATCATCTGATCATTTCGAGTTCAACTCCAAGTTCACTGACAGGATGAGACGGGTTAGGGTACCGTTACCTCTTGTGGATGAAAGGAAAAAGGTGGTGGAGGATGTAGGCAAAGATAGACGTTATGCAATCGATGCATGTATAG</genome_strand>
        <mrna_strand>GGAACTTATCAGGCTGCTGTTTTGTTATTGTTTAATTCTTCAGATAGATTGAGTTACTCAGAAATCAAGAGTCAGTTAAATTTGGCTGATGATGACTTGATCAGATTGCTTCAGTCCCTTTCATGTGCCAAGTATAAAATTCTGATCAAGGAACCTAGCAATAGAACTGTTTCTTCTTCTGATCATTTTGAGTTCAACTCCAAGTTCACTGACAGGATGAGGCGGATTAGGGTCCCATTACCTGCTGTGGATGAAAGGAAAAAGGTAGTCGAGGATGTAGACAAAGATAGACGTTATGCAATTGATGCCTGTATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315321" ref_strand="+" ref_description="SGN-E315321 [cTOA-24-L23]">
      <seq>ttagacttgacgaataaaattaattcttcaaaggccttgtacatatctcactttgaggctatgcaaaatgtagtgaagctgcataaagccacttctaatgctgctctggaggaaatttcgactttggcttcttctaattcaatttccactaaagaatttttagatgcagagtctgttgaaacaaatttaatttttgatgaacttcagaacactctgtcaacccaccaaggagaaatggcaaattttgctagagagcttcgtcagagatttaatgacagtacagagcatttgacaaatatctctgagatcatacaaggattttttgacaaacttttagaagaatcaaaaagacttgaaagacattcaacaacagctgatgagattcaaacgaagtctattgctgaatttgagaaggcatatgaggagcaatcaagatcagatgcagaaaagcttattgctgaggtgacttccttggtctcgaatcacatgcgtcgccaaaagaaactggttggtgcaaggcttggtgatcttagagaaactgtttctggaaataagacattcttggatgggcatgtatcctctatggaaggtattacaacagatacaaaaagaaaatggcaggacttttatacgcaagcagaaggtgagaccaaagaaaatgctgatttctcagctgctaaacattgccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="86809" stop="88518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87109" g_stop="87264" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87265" i_stop="87378" i_length="114">
            <donor d_prob="0.488" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87379" g_stop="87486" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="264" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87487" i_stop="87634" i_length="148">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87635" g_stop="87793" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="423" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87794" i_stop="87865" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87866" g_stop="87949" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="507" r_length="84" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87950" i_stop="88035" i_length="86">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88036" g_stop="88218" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="690" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E315321" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87109" e_stop="87264"/>
          <exon e_start="87379" e_stop="87486"/>
          <exon e_start="87635" e_stop="87793"/>
          <exon e_start="87866" e_stop="87949"/>
          <exon e_start="88036" e_stop="88218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACTTGACGAATAAAATTAATTCTTCAAAGGCCTTGTACATATCTCACTTTGAGGCTATGCAAAATGTAGTGAAGCTGCATAAAGCCACTTCTAATGCTGCTCTGGAGGAAATTTCGACTTTGGCTTCTTCTAATTCAATTTCCACTAAAGAAGTATGACATGAAAGTTTTGCTTTCAGCTTCTGATGTATTTGGATTTCTGTCCATGTAAAATAATAGATGTATTTGTGATTTGAATATCTTTCTTTCTTCCTCTACTTGTTGCAGTTTTTAGATGCAGAGTCTGTTGAAACAAATTTAATTTTTGATGAACTTCAGAACACTCTGTCAACCCACCAAGGAGAAATGGCAAATTTTGCTAGAGAGCTTCGTCAGGTTTCCTTATGCACTTTACTTGTAAATTTTGATTGATAATCAACACTTATTACATCCAGAGATTTGGTAGTTAAAGTTCATTTGAGGATATAGTTCTGCATTTTTCATTCTTTTCATGTTCATCATTGTTTTTTTTCCAATCATGTAGAGATTTAATGACAGTACAGAGCATTTGACAAATATCTCTGAGATCATACAAGGATTTTTTGACAAACTTTTAGAAGAATCAAAAAGACTTGAAAGACATTCAACAACAGCTGATGAGATTCAAACGAAGTCTATTGCTGAATTTGAGAAGGCATATGAGGTATGCCTTATAGACCTGATACAACAATGTTGTTGTTCCTCTAATTTTGATGTCTGTGTTTGTCTACTTTAGGAGCAATCAAGATCAGATGCAGAAAAGCTTATTGCTGAGGTGACTTCCTTGGTCTCGAATCACATGCGTCGCCAAAAAGAACTGGTTTGTTTTTTACTCTATGATCTCCAATCTTATGTAATATACATATGATCTTTCTTCTGTTCCCTTTCTCAAAGTCTACCTGACAGGTTGGTGCAAGGCTTGGTGATCTTAGAGAAACTGTTTCTGGAAATAAGACATTCTTGGATGGGCATGTATCCTCTATGGAAGGTATTACAACAGATACAAAAAGAAAATGGCAGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGA</genome_strand>
        <mrna_strand>TTAGACTTGACGAATAAAATTAATTCTTCAAAGGCCTTGTACATATCTCACTTTGAGGCTATGCAAAATGTAGTGAAGCTGCATAAAGCCACTTCTAATGCTGCTCTGGAGGAAATTTCGACTTTGGCTTCTTCTAATTCAATTTCCACTAAAGAA..................................................................................................................TTTTTAGATGCAGAGTCTGTTGAAACAAATTTAATTTTTGATGAACTTCAGAACACTCTGTCAACCCACCAAGGAGAAATGGCAAATTTTGCTAGAGAGCTTCGTCAG....................................................................................................................................................AGATTTAATGACAGTACAGAGCATTTGACAAATATCTCTGAGATCATACAAGGATTTTTTGACAAACTTTTAGAAGAATCAAAAAGACTTGAAAGACATTCAACAACAGCTGATGAGATTCAAACGAAGTCTATTGCTGAATTTGAGAAGGCATATGAG........................................................................GAGCAATCAAGATCAGATGCAGAAAAGCTTATTGCTGAGGTGACTTCCTTGGTCTCGAATCACATGCGTCGCCAAAAGAAACTG......................................................................................GTTGGTGCAAGGCTTGGTGATCTTAGAGAAACTGTTTCTGGAAATAAGACATTCTTGGATGGGCATGTATCCTCTATGGAAGGTATTACAACAGATACAAAAAGAAAATGGCAGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320551" ref_strand="+" ref_description="SGN-E320551 [cTOB-22-G18]">
      <seq>aggacttttatacgcaagcagaaggtgagaccaaagaaaatgctgatttctcagctgctaaacattgccgaatggagttactcatgcagaagtgtgtaagcacaagtgaaacaactgtgaaacggtggcaaagtactcatgaattggcaaaagacatgtgcaatcaacatgtttcaacaatgcattcagttgtcaggaacctatgcgatagcaatgagcaacatgttattgaattcgattccacaagggaagctgctgaagaagctgtgaaaaggaatagtgaagatatcattaaatctattgacggcttgtcaggggaagagagaggatctatatctggcattctggatactgccagtgcacactcggagaccctagatgaacttaagaaagatcattgcacacagtctacctccattgaacagaaggccattgaaacatttcagcagaagtttatggattatgagccaactggaacaacaccaattaggtctgaaccagatgtaccaagcaagggaacaattgagtcgttgcgagccatgccaatggagactctactagaggaatttcgagagaacattcattggagtccttccagtaaaggaactaaagccatcacttataccacgatctcctctctcactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="87848" stop="90699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88148" g_stop="88241" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88242" i_stop="88443" i_length="202">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88444" g_stop="88545" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88546" i_stop="89270" i_length="725">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89271" g_stop="89380" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="306" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89381" i_stop="89763" i_length="383">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89764" g_stop="89915" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="458" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89916" i_stop="90208" i_length="293">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90209" g_stop="90399" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="647" r_length="189" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E320551" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88148" e_stop="88241"/>
          <exon e_start="88444" e_stop="88545"/>
          <exon e_start="89271" e_stop="89380"/>
          <exon e_start="89764" e_stop="89915"/>
          <exon e_start="90209" e_stop="90399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGAATGGAGTTACTCATGCAGAAGTGGTAAGTATCTGAATTTGCACCTTATATATGTGATTTTGCAAATTCTGCTAAGTTTCAGTAGTTGTTATTTGGTTAACTCAACTCTGATCTGAATTTGTTGGCCTTTTTCAACGAATAGTTGTTTCTCCTTTACTCTATTTCATTTTAAATATATTTGCTTCTATTTTTTCCGTAAGCAATTGTGTCTGGCTTTTCTATCCAGTGTAAGCACAAGTGAAACAACTGTGAAACGGTGGCAAAGTACTCATGAATTGGCAAAAGACATGTGCAATCAACATGTTTCAACAATGCATTCAGTTGTCAGGTGAACTTTCGATGTTACTTGATATTTTATTCTGCCTGAAGAGAGCAGATAAGTAACACATTGGTTATATAAATGAAAGATGTTTTGTAAATATATAAGAATTAAACTCCTTAGTCTGAAAAGTAAATTGTCTAAAGCTATTTTAAACATTTTATTTCGTTTATTTATGACAAGAAAACTGCCTTCCTTTGCAAACAGATAAATAGAAATAAACAACAGTTGTAATATTCCTACCACCATCTAATTAAATTGTTGATTGGGAAGGTTTCCAAGTTTTTGTACAATTTTCAGTTCCTTTTTTTTGCCTATTAACACTGTTAGCTAAAGAAACTATTTTTGGAAATGTGTTTCCTATTTATTGAGACAACTTCATTGGAGCTGGGAATGAGAGTGTTCTCATGGATGTTATGTATTATTTTGTACTGGTGAAAGACAACCATCAAGTAATTGAAATTTGTTGGGACTTGGGAGAATATAAGATAATTGCCTATATCTAGAAGCGCTTGGGGAATTTGTGAGTGGTTACACTTTGTATTGTTAGCAAGAATGGATCTCGGAAGGTTTATGTCAAATTACAGAACATGAGCCTGCAGAAATATAATGTATATTGACTATGGTGTTGGGTATTGAAAAGCAAATACGAGCTTATTACTTTTTTTTGAAGAGAAATTTGAGCACTGCATCCTACATCATTATGACATCCCTTTTTTTTCTTGCTGTTACAGGAACCTATGCGATAGCAATGAGCAACATGTTATTGAATTCGATTCCACAAGGGAAGCTGCTGAAGAAGCTGTGAAAAGGAATAGTGAAGATATCATTAAATCTATTGACGGTAAGTTTTTAAAAATTTGTCTAGTATGTTCTGATTTTGGGTCGTCGCTCTTGAGTTTTTTAAAAAAGAACAAAAGGTAGGCATGCTGTTCAATACTAAAGAAACTCTTCTATAGATAGGCATTTAGTTAGACATTTTGGAAGTAAATTGTGCTCATACAAGCAATAATTCTAACATGGTAAATGATGTAGCACATTTCATTGTAGATTATCTAGTTTCGTCTGTCATGATTAGTTCATATTTTGGTTTGGGTGCTGCTGCCAAGTAGTAATTTTTTCAGGAAAGTAACTTATACAATGGTGTCTTTTTTATGGTTGGCGTGATTTGGTGATGACTATTATGTGCTGTTTTGTAATGTTTCTCCTGGTTTCATTCTTATCCAGGCTTGTCAGGGGAAGAGAGAGGATCTATATCTGGCATTCTGGATACTGCCAGTGCACACTCGGAGACCCTAGATGAACTTAAGAAAGATCATTGCACACAGTCTACCTCCATTGAACAGAAGGCCATTGAAACATTTCAGCAGAAGTTTATGGTATGTTGATCAAGAATCTTACTATACTTTTAAAATGTTCAGGACTCTTTGCTGTTGGTTAGAAGATAAGACAATGCTGTCATACACCATTTTCCGCATAAGTAGTGCAGTTCTGTTGGCCGAATAAGAAAAATAAATCCCTATATACCTAATACCTGTTTAGTTGACGTTATTAGATAATAGAAACACTAAGCTAATAATCCATTCGTAGCTCTTGTCATTTTCTAGCTAAGAAAAGACGTTGTACTGTGTACTTGTGCTGAACTTTTATTACTTTTCTGATTGATTTTCAGGATTATGAGCCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACAATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAATTCATTGGAGTCCTTCCAAGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGAT</genome_strand>
        <mrna_strand>AGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGAATGGAGTTACTCATGCAGAAGTG..........................................................................................................................................................................................................TGTAAGCACAAGTGAAACAACTGTGAAACGGTGGCAAAGTACTCATGAATTGGCAAAAGACATGTGCAATCAACATGTTTCAACAATGCATTCAGTTGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTATGCGATAGCAATGAGCAACATGTTATTGAATTCGATTCCACAAGGGAAGCTGCTGAAGAAGCTGTGAAAAGGAATAGTGAAGATATCATTAAATCTATTGACG...............................................................................................................................................................................................................................................................................................................................................................................................GCTTGTCAGGGGAAGAGAGAGGATCTATATCTGGCATTCTGGATACTGCCAGTGCACACTCGGAGACCCTAGATGAACTTAAGAAAGATCATTGCACACAGTCTACCTCCATTGAACAGAAGGCCATTGAAACATTTCAGCAGAAGTTTATG.....................................................................................................................................................................................................................................................................................................GATTATGAGCCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACAATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAAC-ATTCATTGGAGTCCTTCC-AGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320465" ref_strand="+" ref_description="SGN-E320465 [cTOB-22-F18]">
      <seq>aggacttttatacgcaagcagaaggtgagaccaaagaaaatgctgatttctcagctgctaaacattgccgaatggagttactcatgcagaagtgtgtaagcacaagtgaaacaactgtgaaacggtggcaaagtactcatgaattggcaaaagacatgtgcaatcaacatgtttcaacaatgcattcagttgtcacgaacctatgcgatagcaatgagcaacatgttattgaattcgattccacaagggaagctgctgaacaagctgtgagaaggaatagtgaagatatcattaaatctattgacggcttgtcaagggaagagagaggatctatatctggcattctggatactgccagtgcacactcggagaccctagatgaacttaagaaagatcattgcacacagtctacctccattgaacagaaggccattgaaacatttcagcagaagtttatggattatgagccaactggaacaacaccaattaggtctgaaccagatgtaccaagcaagggaacgattgagtcgttgcgagccatgccaatggagactctactagaggaatttcgagagaacaattcattggagtccttccagtaaaggaactaaagccatcacttataccacgatctcctctctcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="87848" stop="90698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88148" g_stop="88241" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88242" i_stop="88443" i_length="202">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88444" g_stop="88545" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="196" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88546" i_stop="89270" i_length="725">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89271" g_stop="89380" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="306" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89381" i_stop="89763" i_length="383">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89764" g_stop="89915" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="458" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89916" i_stop="90208" i_length="293">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90209" g_stop="90398" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="647" r_length="189" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E320465" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88148" e_stop="88241"/>
          <exon e_start="88444" e_stop="88545"/>
          <exon e_start="89271" e_stop="89380"/>
          <exon e_start="89764" e_stop="89915"/>
          <exon e_start="90209" e_stop="90398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGAATGGAGTTACTCATGCAGAAGTGGTAAGTATCTGAATTTGCACCTTATATATGTGATTTTGCAAATTCTGCTAAGTTTCAGTAGTTGTTATTTGGTTAACTCAACTCTGATCTGAATTTGTTGGCCTTTTTCAACGAATAGTTGTTTCTCCTTTACTCTATTTCATTTTAAATATATTTGCTTCTATTTTTTCCGTAAGCAATTGTGTCTGGCTTTTCTATCCAGTGTAAGCACAAGTGAAACAACTGTGAAACGGTGGCAAAGTACTCATGAATTGGCAAAAGACATGTGCAATCAACATGTTTCAACAATGCATTCAGTTGTCAGGTGAACTTTCGATGTTACTTGATATTTTATTCTGCCTGAAGAGAGCAGATAAGTAACACATTGGTTATATAAATGAAAGATGTTTTGTAAATATATAAGAATTAAACTCCTTAGTCTGAAAAGTAAATTGTCTAAAGCTATTTTAAACATTTTATTTCGTTTATTTATGACAAGAAAACTGCCTTCCTTTGCAAACAGATAAATAGAAATAAACAACAGTTGTAATATTCCTACCACCATCTAATTAAATTGTTGATTGGGAAGGTTTCCAAGTTTTTGTACAATTTTCAGTTCCTTTTTTTTGCCTATTAACACTGTTAGCTAAAGAAACTATTTTTGGAAATGTGTTTCCTATTTATTGAGACAACTTCATTGGAGCTGGGAATGAGAGTGTTCTCATGGATGTTATGTATTATTTTGTACTGGTGAAAGACAACCATCAAGTAATTGAAATTTGTTGGGACTTGGGAGAATATAAGATAATTGCCTATATCTAGAAGCGCTTGGGGAATTTGTGAGTGGTTACACTTTGTATTGTTAGCAAGAATGGATCTCGGAAGGTTTATGTCAAATTACAGAACATGAGCCTGCAGAAATATAATGTATATTGACTATGGTGTTGGGTATTGAAAAGCAAATACGAGCTTATTACTTTTTTTTGAAGAGAAATTTGAGCACTGCATCCTACATCATTATGACATCCCTTTTTTTTCTTGCTGTTACAGGAACCTATGCGATAGCAATGAGCAACATGTTATTGAATTCGATTCCACAAGGGAAGCTGCTGAAGAAGCTGTGAAAAGGAATAGTGAAGATATCATTAAATCTATTGACGGTAAGTTTTTAAAAATTTGTCTAGTATGTTCTGATTTTGGGTCGTCGCTCTTGAGTTTTTTAAAAAAGAACAAAAGGTAGGCATGCTGTTCAATACTAAAGAAACTCTTCTATAGATAGGCATTTAGTTAGACATTTTGGAAGTAAATTGTGCTCATACAAGCAATAATTCTAACATGGTAAATGATGTAGCACATTTCATTGTAGATTATCTAGTTTCGTCTGTCATGATTAGTTCATATTTTGGTTTGGGTGCTGCTGCCAAGTAGTAATTTTTTCAGGAAAGTAACTTATACAATGGTGTCTTTTTTATGGTTGGCGTGATTTGGTGATGACTATTATGTGCTGTTTTGTAATGTTTCTCCTGGTTTCATTCTTATCCAGGCTTGTCAGGGGAAGAGAGAGGATCTATATCTGGCATTCTGGATACTGCCAGTGCACACTCGGAGACCCTAGATGAACTTAAGAAAGATCATTGCACACAGTCTACCTCCATTGAACAGAAGGCCATTGAAACATTTCAGCAGAAGTTTATGGTATGTTGATCAAGAATCTTACTATACTTTTAAAATGTTCAGGACTCTTTGCTGTTGGTTAGAAGATAAGACAATGCTGTCATACACCATTTTCCGCATAAGTAGTGCAGTTCTGTTGGCCGAATAAGAAAAATAAATCCCTATATACCTAATACCTGTTTAGTTGACGTTATTAGATAATAGAAACACTAAGCTAATAATCCATTCGTAGCTCTTGTCATTTTCTAGCTAAGAAAAGACGTTGTACTGTGTACTTGTGCTGAACTTTTATTACTTTTCTGATTGATTTTCAGGATTATGAGCCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACAATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAATTCATTGGAGTCCTTCCAAGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGA</genome_strand>
        <mrna_strand>AGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGAATGGAGTTACTCATGCAGAAGTG..........................................................................................................................................................................................................TGTAAGCACAAGTGAAACAACTGTGAAACGGTGGCAAAGTACTCATGAATTGGCAAAAGACATGTGCAATCAACATGTTTCAACAATGCATTCAGTTGTCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTATGCGATAGCAATGAGCAACATGTTATTGAATTCGATTCCACAAGGGAAGCTGCTGAACAAGCTGTGAGAAGGAATAGTGAAGATATCATTAAATCTATTGACG...............................................................................................................................................................................................................................................................................................................................................................................................GCTTGTCAAGGGAAGAGAGAGGATCTATATCTGGCATTCTGGATACTGCCAGTGCACACTCGGAGACCCTAGATGAACTTAAGAAAGATCATTGCACACAGTCTACCTCCATTGAACAGAAGGCCATTGAAACATTTCAGCAGAAGTTTATG.....................................................................................................................................................................................................................................................................................................GATTATGAGCCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACGATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAATTCATTGGAGTCCTTCC-AGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354281" ref_strand="+" ref_description="SGN-E354281 [cTOS-16-P17]">
      <seq>ccaactggaacaacaccaattaggtctgaaccagatgtaccaagcaagggaacaattgagtcgttgcgagccatgccaatggagactctactagaggaatttcgagagaacaattcattggagtccttccaagtaaaggaactaaagccatcacttataccacgatctcctctctcactgattaacaattagcagattggtctcatcgttccctcgtgcatatgatcacttaatctgtatcggtattttccttgtatactgagtgaatactgcaaactgcagtatatattgtaggttgattggcacagtcttaaacaataaatcccaccttgggatttagaaaaatggctgtaaatgagtaactcttggtacatttatttagtaaaagatggtgctctctatgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="89918" stop="90922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90218" g_stop="90621" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="416"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E354281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90218" e_stop="90621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACAATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAATTCATTGGAGTCCTTCCAAGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGATTAACAATTAGCAGATTGGTCTCATCGTTCCCTCGTGCATATGATCACTTAATCTGTATCGGTATTTTCCTTGTATACTGAGTGAATACTGCAAACTGCAGTATATATTGTAGGTTGATTGGCACAGTCTTAAACAATAAATCCCACCTTGGGATTTAGAAAAATGGCTGTAAATGAGTAACTCTTGGTACATTTATTTAGTAAAAGATGGTGCTCTCTATGT</genome_strand>
        <mrna_strand>CCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACAATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAATTCATTGGAGTCCTTCCAAGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGATTAACAATTAGCAGATTGGTCTCATCGTTCCCTCGTGCATATGATCACTTAATCTGTATCGGTATTTTCCTTGTATACTGAGTGAATACTGCAAACTGCAGTATATATTGTAGGTTGATTGGCACAGTCTTAAACAATAAATCCCACCTTGGGATTTAGAAAAATGGCTGTAAATGAGTAACTCTTGGTACATTTATTTAGTAAAAGATGGTGCTCTCTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744748" ref_strand="+" ref_description="SGN-E744748 [GI|20372845]">
      <seq>attattcttcaatatctttctccaaaatcacaaaaaaaaaaaatggaattatttatgaaaaactcttctctttggggtttaaaattttatttattttgcttatttataattttatcaaacattaatagggcatttgcttctcataatatttttttggacttgcaatcttcaagtgctattagtgtcaagaatgttcatagaactcgttttcattttcaacctcctaaacattggattaatgaccctaatgcaccaatgtattataatggagtgtatcatttattctatcaatacaatccaaaaggatcagtatggggcaatattatttgggctcattcagtctcaaaagacttgataaattggatccatttagaacctgcaatttatccatccaaaaaatttgacaagtatggtacttggtctggatcatcaactattttacctaataacaaacctgttatcatatacaccggagtagtagattcgtataataatcaagtccagaactacgccatcccggctaacctatctgatccatttcttcgtaaatggatcaaacctaacaacaacccgttgatcgtccctgataacagtatcaatagaactgagtttcgcgatccaactacagcttggatgggccaagatgggctttggaggattttaatagcaagtatgagaaaacatagagggatggcattgttgtatagaagtagagattttatgaaatggatcaaagcccaacatccacttcattcatctactaatactggaaattgggagtgtcctgattttttccctgtattatttaatagtaccaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtcctcaagaatagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattgagaatcgactatggtaatttctatgcatcgaagacattctatgatcctagcagaaatcgaagggttatttggggttggtcaaatgaatccgatgtattacctgacgatgaaattaagaaaggatgggctggaattcaaggtattccgcgacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgtttttaacaatggctctgagacaatcacaattgagactctgaatgcttggagcatggatgcatgtaagatgaactaaatattttcaaaaaaattggaattatgtctacaattatatatgtctaaagagacaaaaattgtgttaaatttaacagtagatgatgttcacaaaaatcctctataattgtctctaatttattttggtgaatttagaaggcaaagtgtgtgtatggatttttctagtaccatatatatatatattaagtaagaaatttgttagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="97346" stop="101809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97646" g_stop="97886" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97887" i_stop="99171" i_length="1285">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99172" g_stop="99180" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="250" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99181" i_stop="99257" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99258" g_stop="100279" g_length="1022"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="1272" r_length="1022" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1273" r_stop="1517" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1518" r_stop="1617" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101125" g_stop="101509" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1618" r_stop="2002" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E744748" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2002</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97646" e_stop="97886"/>
          <exon e_start="99172" e_stop="99180"/>
          <exon e_start="99258" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTCTTCAATATCTTTCTCCAAAATCACAAAAAAAAAAAATGGAATTATTTATGAAAAACTCTTCTCTTTGGGGTTTAAAATTTTATTTATTTTGCTTATTTATAATTTTATCAAACATTAATAGGGCATTTGCTTCTCATAATATTTTTTTGGACTTGCAATCTTCAAGTGCTATTAGTGTCAAGAATGTTCATAGAACTCGTTTTCATTTTCAACCTCCTAAACATTGGATTAATGGTATGTTCATTTTTTTTTTATTTTATATAACATGCGATAAATTTAACGTTAGCAATGTGGTTTGTTATTTAAATTCGAATTTGATTATATGACTTTGCTTATATAAATATACATAGTAATAAAAGTTTGTGTATAAATGCATGTCATATACATTTATTGACTTGGTATATATATCAGTACGATTAAATTAATTGATGGTGCAATTAATATTGCATTATTTAGGTGATAAAACTACAGAAATAAACGAAAATATTTTTTTATATATAGAGAAGTTCAAATGTTGATGTTTCTTTTATGGTTACATTGTTTTAAAATGTTTTTTTTTAACTATCTTTATAGCTACATATATATAAGATTGATCATTCTTTATATTTCAAAATTATATCTACATACACACATATACATCATTATGTGGTTCATTTATGTTAGTTTTCAGTATTCGATATTTATTTTTAAGTTTAATTTATTTAAATCTGCGTTAAAATATCTCACTTTTAAAGATAGAATCACTCCTGACCAACTATGAGTAACTCGATTCTCAAAATTTAAATTCGAAATTAGATTAATTATCATGGCAAGAGAACTACAACGTTTTGGATAAGAATGTGCAAAAGAGAGAAAGAAACATGAAATATATAAAAACCTAAGATTTTGGCCATGGAATTTAGGTGAAAATTAATTTGTTGAAGGCACCCTTTATTATTATTATTATAATTATTATTATTATTAATGAAATATAGTGACATTTCATACTCATATATTGTGTGCATTTAATTAATATATGTAGGTCTTATGTTAATTTAAACTTACCAAACATATTGTCTCTTATAAAGTTGACTCCCCCCCTCAACCCCCAACCCCCACCCCCACCCCCACCCCACCCAAAAAAATTACCTCATCAATTTCGTTTTTTATATGACACAATTTTCTTGTTTAATTTGTTATCTACAGAACGACTACTTTCTATATCATTCTACATAATATGTATATTTTTTATAATCACAATAAATCTCATGACACGTTTTCAGATCATAATTTTGCAAACACCTTTTTCTTTATTTTTTAATTAGGTATATCACATAAATTAAAAGGATTCATTAATTTTCGCAGAGAAAACTAATTAGTTTCTGTGTTTTTCACCTTTCATTTATTAATTACTACATAATTTTTAATCAATAATTGATGAAAGACTATGTAATGTATTCTATTATCTTCACTAATCATTTTTTTTTTGTATAATTCTTATATGGTCTCTCTCCATTGGATGCCTTTCAAATATACAAAGACCCTAATGGTAAGTTAGATTATTTTTCATTTAATTTTATCAATAACTCAATGATATTATTGATTTTCATTTTATTTTTCAAACAGCACCAATGTATTATAATGGAGTGTATCATTTATTCTATCAATACAATCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTACGCCATCCCGGCTAACCTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATGGATTTTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTT</genome_strand>
        <mrna_strand>ATTATTCTTCAATATCTTTCTCCAAAATCACAAAAAAAAAAAATGGAATTATTTATGAAAAACTCTTCTCTTTGGGGTTTAAAATTTTATTTATTTTGCTTATTTATAATTTTATCAAACATTAATAGGGCATTTGCTTCTCATAATATTTTTTTGGACTTGCAATCTTCAAGTGCTATTAGTGTCAAGAATGTTCATAGAACTCGTTTTCATTTTCAACCTCCTAAACATTGGATTAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTAATG.............................................................................CACCAATGTATTATAATGGAGTGTATCATTTATTCTATCAATACAATCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTACGCCATCCCGGCTAACCTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATGGATTTTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E741056" ref_strand="+" ref_description="SGN-E741056 [GI|7414363]">
      <seq>atggaattatttatgaaaaactcttctctttggggtttaaaattttatttattttgcctatttatagttttattaaacattaatagggtatttgcttctcataatatttttttggacttgcaatcttcaagtgctattagtgtcaagaatgttcatagaactcgttttcattttcaacctcctaaacattggattaatgaccctaatgcaccaatgtattataatggagtgtatcatttattctatcaatacaatccaaaaggatcagtatggggcaatattatttgggctcattcagtctcaaaagacttgataaattggatccatttagaacctgcaatttatccatccaaaaaatttgacaagtatggtacttggtctggatcatcaactattttacctaataacaaacctgttatcatatacaccggagtagtagattcgtataataatcaagtccagaactatgccatcccggctaacttatctgatccatttcttcgtaaatggatcaaacctaacaacaacccgttgatcgtccctgataatagtatcaatagaactgagtttcgcgatccaactacagcttggatgggccaagatgggctttggaggattttaataggaagtatgagaaaacatagagggatggcattgttgtatagaagtagagattttatgaaatggatcaaagcccaacatccacttcattcatctactaatactggaaattgggaatgtcctgattttttccctgtatcattaaatagtaccaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtccttaagaatagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtacattccgaataacaattcaattgatggatggaagggattgagaatcgactatggtaatttctatgcatcaaagacattctatgatcctagcagaaatcgaagggttatttggggttggtcaaatgaatcggatgtattacctgacgatgatattaagaaaggatgggctggaattcaaggtattccgcgacaagtatggctagaccttagtggtaaacaattagttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaaggaatctcagcatcacaggctgatgttgaagtnttattctcattttcaagtttaaacaaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtctgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgcgacattagcttctaaaaacttagaagagtacacacctgttttcttccgagtgttcaaggctcaaaagaattataagattctcatgtgctcagatgctagaagatctaccatgagacaaaatgaagcaatgtataagccctcatttgctggatatgtagatgtagatttagtagacatgaagaagttatctcttaggagtttgattgatcactcagtagtggagagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaagtttagcgatttatgataatgcacatttatttgtctttaacaatggctctgagacaatcacaattgagactctgaatgcttggagcatgggtgcatgtaagatgaactaaatattttcaaaaaaatggaattatgtctacaattatatatgtctaaagagacaaaaattgtgttaaatttaacagtagatgatgttcacaaaattcctctataattgtctctaatttattttggtgaatttagaaggcaaagtgtgtgtatatgaacttttctagtaccatatatatatactaagaaagaaatttgttagctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="97388" stop="101809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97688" g_stop="97886" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97887" i_stop="99171" i_length="1285">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99172" g_stop="99180" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="208" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99181" i_stop="99257" i_length="77">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.654" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99258" g_stop="100279" g_length="1022"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="1230" r_length="1022" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1475" r_length="245" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1476" r_stop="1575" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="101125" g_stop="101509" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1576" r_stop="1959" r_length="384" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1960" polyA_stop="1976"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E741056" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>1960</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E741056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97688" e_stop="97886"/>
          <exon e_start="99172" e_stop="99180"/>
          <exon e_start="99258" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATTATTTATGAAAAACTCTTCTCTTTGGGGTTTAAAATTTTATTTATTTTGCTTATTTATAATTTTATCAAACATTAATAGGGCATTTGCTTCTCATAATATTTTTTTGGACTTGCAATCTTCAAGTGCTATTAGTGTCAAGAATGTTCATAGAACTCGTTTTCATTTTCAACCTCCTAAACATTGGATTAATGGTATGTTCATTTTTTTTTTATTTTATATAACATGCGATAAATTTAACGTTAGCAATGTGGTTTGTTATTTAAATTCGAATTTGATTATATGACTTTGCTTATATAAATATACATAGTAATAAAAGTTTGTGTATAAATGCATGTCATATACATTTATTGACTTGGTATATATATCAGTACGATTAAATTAATTGATGGTGCAATTAATATTGCATTATTTAGGTGATAAAACTACAGAAATAAACGAAAATATTTTTTTATATATAGAGAAGTTCAAATGTTGATGTTTCTTTTATGGTTACATTGTTTTAAAATGTTTTTTTTTAACTATCTTTATAGCTACATATATATAAGATTGATCATTCTTTATATTTCAAAATTATATCTACATACACACATATACATCATTATGTGGTTCATTTATGTTAGTTTTCAGTATTCGATATTTATTTTTAAGTTTAATTTATTTAAATCTGCGTTAAAATATCTCACTTTTAAAGATAGAATCACTCCTGACCAACTATGAGTAACTCGATTCTCAAAATTTAAATTCGAAATTAGATTAATTATCATGGCAAGAGAACTACAACGTTTTGGATAAGAATGTGCAAAAGAGAGAAAGAAACATGAAATATATAAAAACCTAAGATTTTGGCCATGGAATTTAGGTGAAAATTAATTTGTTGAAGGCACCCTTTATTATTATTATTATAATTATTATTATTATTAATGAAATATAGTGACATTTCATACTCATATATTGTGTGCATTTAATTAATATATGTAGGTCTTATGTTAATTTAAACTTACCAAACATATTGTCTCTTATAAAGTTGACTCCCCCCCTCAACCCCCAACCCCCACCCCCACCCCCACCCCACCCAAAAAAATTACCTCATCAATTTCGTTTTTTATATGACACAATTTTCTTGTTTAATTTGTTATCTACAGAACGACTACTTTCTATATCATTCTACATAATATGTATATTTTTTATAATCACAATAAATCTCATGACACGTTTTCAGATCATAATTTTGCAAACACCTTTTTCTTTATTTTTTAATTAGGTATATCACATAAATTAAAAGGATTCATTAATTTTCGCAGAGAAAACTAATTAGTTTCTGTGTTTTTCACCTTTCATTTATTAATTACTACATAATTTTTAATCAATAATTGATGAAAGACTATGTAATGTATTCTATTATCTTCACTAATCATTTTTTTTTTGTATAATTCTTATATGGTCTCTCTCCATTGGATGCCTTTCAAATATACAAAGACCCTAATGGTAAGTTAGATTATTTTTCATTTAATTTTATCAATAACTCAATGATATTATTGATTTTCATTTTATTTTTCAAACAGCACCAATGTATTATAATGGAGTGTATCATTTATTCTATCAATACAATCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTACGCCATCCCGGCTAACCTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTG--TATGGATTTTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTT</genome_strand>
        <mrna_strand>ATGGAATTATTTATGAAAAACTCTTCTCTTTGGGGTTTAAAATTTTATTTATTTTGCCTATTTATAGTTTTATTAAACATTAATAGGGTATTTGCTTCTCATAATATTTTTTTGGACTTGCAATCTTCAAGTGCTATTAGTGTCAAGAATGTTCATAGAACTCGTTTTCATTTTCAACCTCCTAAACATTGGATTAATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTAATG.............................................................................CACCAATGTATTATAATGGAGTGTATCATTTATTCTATCAATACAATCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTATGCCATCCCGGCTAACTTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAATAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGGAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAATGTCCTGATTTTTTCCCTGTATCATTAAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTTAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTACATTCCGAATAACAATTCAATTGATGGATGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCAAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCGGATGTATTACCTGACGATGATATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAGACCTTAGTGGTAAACAATTAGTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGAATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTDTTATTCTCATTTTCAAGTTTAAACAAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTCTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGCGACATTAGCTTCTAAAAACTTAGAAGAGTACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAGAATTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTACCATGAGACAAAATGAAGCAATGTATAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGTAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATCACTCAGTAGTGGAGAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAAGTTTAGCGATTTATGATAATGCACATTTATTTGTCTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGGTGCATGTAAGATGAACTAAATATTTTCAAAAAAA-TGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAATTCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATATGAACTTTTCTAGTACC--ATATATATATACTAAGAAAGAAATTTGTTAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745216" ref_strand="+" ref_description="SGN-E745216 [GI|1771149]">
      <seq>ccttcacttgttttatcagtataacccaaaaggatcagtatggggcaatattatttgggctcattcagtctcaaaagacttgataaattggatccatttagaacctgcaatttatccatccaaaaaatttgacaagtatggtacttggtctggatcatcaactattttacctaataacaaacctgttatcatatacaccggagtagtagattcgtataataatcaagtccagaactacgccatcccggctaacctatctgatccatttcttcgtaaatggatcaaacctaacaacaacccgttgatcgtccctgataacagtatcaatagaactgagtttcgcgatccaactacagcttggatgggccaagatgggctttggaggattttaatagcaagtatgagaaaacatagagggatggcattgttgtatagaagtagagattttatgaaatggatcaaagcccaacatccacttcattcatctactaatactggaaattgggagtgtcctgattttttccctgtattatttaatagtaccaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtcctcaagaatagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattgagaatcgactatggtaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="98983" stop="100304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99280" g_stop="100004" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E745216" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99280" e_stop="100004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATTTATTCTATCAATACAATCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTACGCCATCCCGGCTAACCTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCT</genome_strand>
        <mrna_strand>CCTTCACTTGTTTTATCAGTATAACCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTACGCCATCCCGGCTAACCTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240648" ref_strand="+" ref_description="SGN-E240648 [cLED-21-P10]">
      <seq>tgatcgtccctgataacagtatcaatagaactgagtttcgcgatccaactacagcttggatgggccaagatgggctttggaggattttaatagcaagtatgagaaaacatagagggatggcattgttgtatagaagtagagattttatgaaatggatcaaagcccaacatccacttcattcatctactaatactggaaattgggagtgtgctgattttttccctgtattatttaatagtaccaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtcctcaagaatagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattgagaatcgactatggtaatttctatgcatcgaagacattctatgatcctagcagaaatcgaagggttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99282" stop="100352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99582" g_stop="100052" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E240648" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99582" e_stop="100052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTT</genome_strand>
        <mrna_strand>TGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTGCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239600" ref_strand="+" ref_description="SGN-E239600 [cLED-23-L5]">
      <seq>tgatcgtccctgataacagtatcaatagaactgagtttcgcgatccaactacagcttggatgggccaagatgggctttggaggattttaatagcaagtatgagaaaacatagagggatggcattgttgtatagaagtagagattttatgaaatggatcaaagcccaacatccacttcattcatctactaatactggaaattgggagtgtcctgattttttccctgtattatttaatagtaccaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtcctcaagaatagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattgagaatcgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99282" stop="100293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99582" g_stop="99993" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E239600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99582" e_stop="99993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTA</genome_strand>
        <mrna_strand>TGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240518" ref_strand="+" ref_description="SGN-E240518 [cLED-21-A13]">
      <seq>tagaactgagtttcgcgatccaactacagcttggatgggccaagatgggctttggaggattttaatagcaagtatgagaaaacatagagggatggcattgttgtatagaagtagagattttatgaaatggatcaaagcccaacatccacttcattcatctactaatactggaaattgggagtgtcctgattttttccctgtattatttaatagtaccaaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtcctcaagaatagtcttgatgttgctaggcttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99307" stop="100282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99607" g_stop="99982" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E240518" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99607" e_stop="99982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACC-AATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTG</genome_strand>
        <mrna_strand>TAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGCTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261244" ref_strand="+" ref_description="SGN-E261244 [cLEG-68-E1]">
      <seq>caacatccacttcattcatctactaatactggaaattgggagtgtcctgattttttccctgtattatttaatagtaccaatggtttagatgtatcgtatcgcggaaaaaatgttaaatatgtcctcaagaatagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattgagaatcgactatggtaatttctatgcatcgaagacattctatgatcctagcagaaatcgaagggttatttggggttggtcaaatgaatccgatgtattacctgacgatgaaattaagaaaggatgggctggaattcaaggtattccgcgacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99446" stop="100855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99746" g_stop="100279" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100555" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="631" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E261244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99746" e_stop="100279"/>
          <exon e_start="100459" e_stop="100555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCA</genome_strand>
        <mrna_strand>CAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235797" ref_strand="+" ref_description="SGN-E235797 [cLED-15-G4]">
      <seq>tagtcttgatgttgctaggtttgattattacactattggcatgtatcacaccaaaatagataggtatattccgaataacaattcaattgatggttggaagggattgagaatcgactatggtaatttctatgcatcgaagacattctatgatcctagcagaaatcgaagggttatttggggttggtcaaatgaatccgatgtattacctgacgatgaaattaagaaaggatgggctggaattcaaggtattccgcgacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99577" stop="100920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99877" g_stop="100279" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100620" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="565" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E235797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99877" e_stop="100279"/>
          <exon e_start="100459" e_stop="100620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAAC</genome_strand>
        <mrna_strand>TAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367950" ref_strand="+" ref_description="SGN-E367950 [TUS-22-H23]">
      <seq>ttcaaggtattccgcgacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactntagcgatttatgataatgcacatttatttgtttttaacaatggctctgagacaatcacaattgagactctgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99816" stop="101573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100116" g_stop="100279" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="409" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="509" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101125" g_stop="101273" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="658" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E367950" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100116" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGC</genome_strand>
        <mrna_strand>TTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTNTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237654" ref_strand="+" ref_description="SGN-E237654 [cLED-19-C16]">
      <seq>ttcaaggtattccgcgacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99816" stop="101005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100116" g_stop="100279" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="409" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E237654" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100116" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG</genome_strand>
        <mrna_strand>TTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232957" ref_strand="+" ref_description="SGN-E232957 [cLED-6-C2]">
      <seq>gacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgtttttaacaatggctctgagacaatcacaattgagactctgaatgcttggagcatggatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99831" stop="101589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100131" g_stop="100279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="394" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="494" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101125" g_stop="101286" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="656" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E232957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100131" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGAT</genome_strand>
        <mrna_strand>GACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240137" ref_strand="+" ref_description="SGN-E240137 [cLED-32-H10]">
      <seq>gacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99831" stop="101521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100131" g_stop="100279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="394" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="494" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101125" g_stop="101221" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="591" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E240137" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100131" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATT</genome_strand>
        <mrna_strand>GACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232887" ref_strand="+" ref_description="SGN-E232887 [cLED-8-O10]">
      <seq>gacaagtatggctaaaccttagtggtaaacaattacttcaatggcctattgaagaattagaaaccctaaggaagcaaaaggtccaattgaacaacatgaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99831" stop="101251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100131" g_stop="100279" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="394" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100894" g_stop="100951" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="452" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E232887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100131" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGAT</genome_strand>
        <mrna_strand>GACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACATGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323892" ref_strand="+" ref_description="SGN-E323892 [cTOC-3-A17]">
      <seq>aaaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttacgagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgtttttaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99891" stop="101538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100191" g_stop="100279" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="334" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="434" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101125" g_stop="101238" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="548" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E323892" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100191" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAAT</genome_strand>
        <mrna_strand>AAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTACGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228259" ref_strand="+" ref_description="SGN-E228259 [cLED-2-D2]">
      <seq>aaccctaaggaagcaaaaggtccaattgaacaacaagaagttgagcaagggagaaatgtttgaagttaaagggatctcagcatcacaggctgatgttgaagtgctgttctcattttcaagtttgaacgaggccgaacaatttgatcctagatgggctgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="99892" stop="101532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100192" g_stop="100279" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100459" g_stop="100703" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="333" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="433" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101125" g_stop="101232" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="541" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E228259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100192" e_stop="100279"/>
          <exon e_start="100459" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAGGTTTCAACTTTTCCTTATTAAACTATAGTCTTTTAAATATCATTAATCTACTTCTTATATGTATAATCAATGTATAACTATTATATCAAATGCACATGATCGATTGATTATACATTTGCTATATATATATCTCTATTATATCAATTGCACTGTCTCATCTTGCATTTCTTTGATCGTAGGCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTT</genome_strand>
        <mrna_strand>AACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG...................................................................................................................................................................................GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231264" ref_strand="+" ref_description="SGN-E231264 [cLED-5-P21]">
      <seq>tgacctatatgcccaagacgtttgtgccattaagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctgttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgtttttaacaatggctctgagacaatcacaattgagactctgaatgcttggagcatggatgcatgtaagatgaactaaatattttcaaaaaaattggaattatgtctacaattatatatgtctaaagagacaaaaattgtgttaaatttaacagtagatgatgttcacaaaaatcctctataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="100227" stop="101710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100527" g_stop="100703" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="277" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101125" g_stop="101410" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="563" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E231264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100527" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAAT</genome_strand>
        <mrna_strand>TGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553013" ref_strand="+" ref_description="SGN-E553013 [cTSB-5-L9]">
      <seq>aagggttcgactatccaaggtgggcttggaccatttgggcttgtgacattagcttctaaaaacttagaagaatacacacctggttttcttccgagtgttcaaggctcaaaaaagttataagattctcatgtgctcagatgctagaagatcttccatgagacaaaatgaagcaatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaagaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgtttttaacaatggctctgagacaatcacaattgagactctgaatgcttggagcatggatgcatgtaagatgaactaaatattttcaaaaaaattggaattatgtctacnaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="100258" stop="101644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100558" g_stop="100703" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100894" g_stop="100993" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="247" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101125" g_stop="101336" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="459" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="484"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E553013" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100558" e_stop="100703"/>
          <exon e_start="100894" e_stop="100993"/>
          <exon e_start="101125" e_stop="101336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCT-GTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAGGTTTGTTTCTTCAATCCAATTAATTGTAATGATCGAAGTTCACATCTTCTCCAAATTGAGTAAATCGAGAATTATAATGACCCGACTTTGATATCATGATAAGAAATGCATTTACTTATAGATCGCCCGTTAGTGTCATTAAAAAACTCTAACCTTGTTTAGGTTTTTTTTTTTTTTAATTAATGAGCAGATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACA</genome_strand>
        <mrna_strand>AAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG..............................................................................................................................................................................................ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367949" ref_strand="+" ref_description="SGN-E367949 [TUS-22-H23](-)">
      <seq>aatgtacaagccctcatttgctggatatgtagatgtagatttagaagacatgaaaaagttatctcttaggagtttgattgataactcagtagtggaaagtttcggtgctggtggcaaaacatgcataacatcaagggtgtatccaactttagcgatttatgataatgcacatttatttgtttttaacaatggcttttagacaatcacaattgagactctgaatgcttggagcatggatgcatgtaaaatgaactaaatattttcaaaaaaattggaattatgtctacaattatatatgtttaaaaaaacaaaaattgtgttaaatttaacagtaaatgatgttcacaaaaatcctctataattgtctctaatttattttggtgaatttagaaggcaaagtgtgtgtatggatttttctagtaccatatatatatatattaagtaagaaatttgttagctttcctttttgttttgtaacataatcaaatgtgtggttttatgtagaactaatatttggtaatattaggcaagttgttatgtgacttattttattcaaaaatataataaaaagttcaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="100618" stop="101946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100918" g_stop="100993" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101125" g_stop="101632" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="584" r_length="508" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="601"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E367949" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100918" e_stop="100993"/>
          <exon e_start="101125" e_stop="101632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTGGTAAGTTTTGCTTTCACAATTTTTATTTATTTATAATTTATTTGATCAAAACTTTCAAGATTCGATTAATTTGAAGAGTAACGATTTGTGTTTGACTAATCAATTTGTATCATATGCATATTTTTTTTTAGATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATGGATTTTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTTCCTTTTTGTTTTGTAACATAATCAAATGTGTGGTCTTATGTAGAACTAATATTTGGTAATATTAGGCAAGTTGTTATGTGACTTATTTTATTCAAAAATATAATAAGAAGTTCAAAGAGAAGA</genome_strand>
        <mrna_strand>AATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAAAAGTTATCTCTTAGGAGTTTG...................................................................................................................................ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTTTTAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAAATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTTTAAAAAAACAAAAATTGTGTTAAATTTAACAGTAAATGATGTTCACAAAAATCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATGGATTTTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTTCCTTTTTGTTTTGTAACATAATCAAATGTGTGGTTTTATGTAGAACTAATATTTGGTAATATTAGGCAAGTTGTTATGTGACTTATTTTATTCAAAAATATAATAAAAAGTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363623" ref_strand="+" ref_description="SGN-E363623 [cLPP-3-M20]">
      <seq>gagtttttttctccttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatacctgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102420" stop="104152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102718" g_stop="103019" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="310" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103852" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="545" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363623" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102718" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTTCTTTTCTCCTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATA-CTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGC</genome_strand>
        <mrna_strand>GAGTTT-TTTTCTCCTTATCC-CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACCTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363327" ref_strand="+" ref_description="SGN-E363327 [cLPP-4-J15]">
      <seq>agaactagtctcgagtttctttctccttatcccaaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102412" stop="104072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102720" g_stop="103019" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="313" r_length="299" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="322" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103772" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="477" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363327" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102720" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTTCTCCTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGAT</genome_strand>
        <mrna_strand>GTTTC-TTTCTCCTTATCCCAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364157" ref_strand="+" ref_description="SGN-E364157 [cLPP-16-D11]">
      <seq>ctccttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102429" stop="104147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102729" g_stop="103019" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="299" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103847" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="529" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364157" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102729" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATA</genome_strand>
        <mrna_strand>CTCCTTATCC-CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359674" ref_strand="+" ref_description="SGN-E359674 [cLPP-5-E7]">
      <seq>tccttatcccaaaaaaaaaaatttaaaaagattctttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattctattatccaataatgttgtttttgctactcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgatcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggctcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102430" stop="104035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102730" g_stop="103019" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="298" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103735" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359674" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102730" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAA</genome_strand>
        <mrna_strand>TCCTTATCC-CAAAAAAAAAAATTTAAAAAGATTCTTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTCTATTATCCAATAATGTTGTTTTTGCTACTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGATCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGCTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362574" ref_strand="+" ref_description="SGN-E362574 [cLPP-1-M16]">
      <seq>ccttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102431" stop="104150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102731" g_stop="103019" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="297" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103850" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="530" r_length="233" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362574" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102731" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGAT</genome_strand>
        <mrna_strand>CCTTATCC-CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546911" ref_strand="+" ref_description="SGN-E546911 [TUS-70-I8]">
      <seq>cttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttnattggaagtttgagggaacacagcaggggtttagctataatgtacaggagtaaagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102432" stop="104329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102732" g_stop="103019" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="296" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104089" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="769" r_length="473" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E546911" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102732" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCG-TCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTT</genome_strand>
        <mrna_strand>CTTATCC-CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTNATTGGAAGTTTGAGGGAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362091" ref_strand="+" ref_description="SGN-E362091 [cLPP-11-O19]">
      <seq>cttatcccaaagaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagctatcttacttagctttggtgtaattttattatccaataatgttgtttttgcttctcataaagtatgtattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102432" stop="103942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102732" g_stop="103019" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="296" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103642" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="321" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362091" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102732" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTA</genome_strand>
        <mrna_strand>CTTATCC-CAAAGAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGCTATCTTACTTAGCTTTGGTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTATGTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334559" ref_strand="+" ref_description="SGN-E334559 [cTOD-23-P6]">
      <seq>ttatccaaaaaaaaaaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccanccaaaccccagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103960" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="638" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E334559" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAG</genome_strand>
        <mrna_strand>TTATCC-AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCANCCAAACCCCAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362412" ref_strand="+" ref_description="SGN-E362412 [cLPP-10-L4]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103956" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="634" r_length="339" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362412" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATG</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360473" ref_strand="+" ref_description="SGN-E360473 [cLPP-8-E2]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103906" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="584" r_length="289" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360473" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATA</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331604" ref_strand="+" ref_description="SGN-E331604 [cTOD-7-A21]">
      <seq>ttatccaaaaaaaaaaaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="296" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103888" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="567" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E331604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGC</genome_strand>
        <mrna_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334572" ref_strand="+" ref_description="SGN-E334572 [cTOD-23-E15]">
      <seq>ttatccaaaaaaaaaaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggntaacagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103876" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="554" r_length="259" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E334572" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTA</genome_strand>
        <mrna_strand>TTATCC-AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGNTAACAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363828" ref_strand="+" ref_description="SGN-E363828 [cLPP-3-H24]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103853" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="531" r_length="236" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363828" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCC</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362273" ref_strand="+" ref_description="SGN-E362273 [cLPP-10-O20]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccagatggtccagtatggggtgacattgtaagggctcattcaacatcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103803" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="481" r_length="186" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362273" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCA</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAGATGGTCCAGTATGGGGTGACATTGTAAGGGCTCATTCAACATCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363255" ref_strand="+" ref_description="SGN-E363255 [cLPP-4-E9]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103794" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="472" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363255" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGAT</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359563" ref_strand="+" ref_description="SGN-E359563 [cLPP-5-K19]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103774" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="452" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359563" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCA</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361338" ref_strand="+" ref_description="SGN-E361338 [cLPP-6-C23]">
      <seq>ttatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="104059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103019" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="295" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103759" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="437" r_length="142" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361338" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATC</genome_strand>
        <mrna_strand>TTATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363239" ref_strand="+" ref_description="SGN-E363239 [cLPP-19-L12]">
      <seq>ttatcccaaaaaaaaaaagttaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagatatcttaattggcttttttgtaattttattatccaataatgttgtttatgctcctcataaagtttttattcacttgcaatctcaaaaatgctgtaaatgttcatactgtgcattgaactgggattcattttcagtccgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102433" stop="103284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102733" g_stop="103007" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363239" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102733" e_stop="103007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTC-AAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAAC</genome_strand>
        <mrna_strand>TTATCCCAAAAAAAAAAAGTTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGATATCTTAATTGGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTATGCTCCTCATAAAGTTTTTATTCACTTGCAATCTCAAAAATGCTGTAAATGTTCATACTGTGCATTGAACTGGGATTCATTTTCAGTCCGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360728" ref_strand="+" ref_description="SGN-E360728 [cLPP-7-C21]">
      <seq>tatcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcagagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttccgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccagatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102434" stop="104093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102734" g_stop="103019" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="294" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103793" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="470" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360728" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102734" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGA</genome_strand>
        <mrna_strand>TATCCCA-AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAGAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTCCGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAGATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363599" ref_strand="+" ref_description="SGN-E363599 [cLPP-3-E8]">
      <seq>tcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="103019" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="292" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103964" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="639" r_length="347" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363599" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATC</genome_strand>
        <mrna_strand>TCCCAAAA-AAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362795" ref_strand="+" ref_description="SGN-E362795 [cLPP-2-A16]">
      <seq>tcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="103019" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="292" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103960" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="635" r_length="343" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362795" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAG</genome_strand>
        <mrna_strand>TCCCAAAA-AAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360526" ref_strand="+" ref_description="SGN-E360526 [cLPP-8-H3]">
      <seq>tcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="103019" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="292" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103880" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="555" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360526" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCA</genome_strand>
        <mrna_strand>TCCCAAAA-AAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359559" ref_strand="+" ref_description="SGN-E359559 [cLPP-5-I19]">
      <seq>tcccaaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102436" stop="104052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="103019" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="293" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103752" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="428" r_length="135" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359559" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTT</genome_strand>
        <mrna_strand>TCCCAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360024" ref_strand="+" ref_description="SGN-E360024 [cLPP-9-D6]">
      <seq>tcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="103019" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="292" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360024" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTA</genome_strand>
        <mrna_strand>TCCCAAAA-AAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364474" ref_strand="+" ref_description="SGN-E364474 [cLPP-18-O17]">
      <seq>tcccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgccaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="103970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102736" g_stop="103019" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="292" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103670" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="345" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364474" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102736" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAAT</genome_strand>
        <mrna_strand>TCCCAAAA-AAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGCCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363032" ref_strand="+" ref_description="SGN-E363032 [cLPP-2-L3]">
      <seq>ccaaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102438" stop="104320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102738" g_stop="103019" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="291" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104020" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="694" r_length="403" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363032" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102738" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTG</genome_strand>
        <mrna_strand>CCAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365181" ref_strand="+" ref_description="SGN-E365181 [cLPP-17-L21]">
      <seq>ccaaaaaaaaaaaatttaaaaaaattatttagattaaataccactatctgtcatggcccgattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102438" stop="104268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102738" g_stop="103019" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="291" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103968" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="642" r_length="351" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E365181" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102738" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACA</genome_strand>
        <mrna_strand>CCAAAAAAAAAAAATTTAAAAAAATTATTTAGATTAAATACCACTATCTGTCATGGCCCGATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363294" ref_strand="+" ref_description="SGN-E363294 [cLPP-4-K12]">
      <seq>ccaaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102438" stop="104075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102738" g_stop="103019" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="291" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103775" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="449" r_length="158" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363294" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102738" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAA</genome_strand>
        <mrna_strand>CCAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361734" ref_strand="+" ref_description="SGN-E361734 [cLPP-12-J14]">
      <seq>ccaaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcctctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102438" stop="104059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102738" g_stop="103019" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="291" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103759" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="433" r_length="142" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361734" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102738" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATC</genome_strand>
        <mrna_strand>CCAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCCTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362480" ref_strand="+" ref_description="SGN-E362480 [cLPP-1-B12]">
      <seq>ccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102739" g_stop="103019" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="290" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103906" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="579" r_length="289" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362480" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102739" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATA</genome_strand>
        <mrna_strand>CCAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362397" ref_strand="+" ref_description="SGN-E362397 [cLPP-10-F22]">
      <seq>ccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102739" g_stop="103019" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="290" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103827" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="500" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362397" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102739" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCA</genome_strand>
        <mrna_strand>CCAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360947" ref_strand="+" ref_description="SGN-E360947 [cLPP-13-K18]">
      <seq>ccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102739" g_stop="103019" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="290" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103763" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="436" r_length="146" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360947" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102739" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAG</genome_strand>
        <mrna_strand>CCAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362262" ref_strand="+" ref_description="SGN-E362262 [cLPP-10-K24]">
      <seq>ccaaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102739" g_stop="103019" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="290" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="412" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362262" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102739" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTA</genome_strand>
        <mrna_strand>CCAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747088" ref_strand="+" ref_description="SGN-E747088 [GI|20467112]">
      <seq>aaaaaaaaaaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattggagaatcgtcatgggaagtttgaggaaacacagcaggggcttagctataatgtataggagcaaagactttatgaaatgggtcaaggctaaacacccacttcactcaactaacggcactggaaactgggaatgccctgatttttacccagtttcatcgaaaggtactgatgggttggatcaatacggtgaggaacacaagtacgtgctgaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacgaaaaaagataggtacgttccagatccagattctgtcgatagtttgaagggattgagactcgattacggtaacttctacgcatcgaagtcattctacgatccaagcaaaaatcgaagggttatctggggttggtctaatgaatcagatatattcccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgtggaggaactagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggggagaagattgaagttacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagctactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatattgaagaaaaaaaaaagaataaggagaaaggaactatggtaaaagggggaaatatgagattttgatggacatataagagtttgttattttgatatttcaactctattttttttgtttatcaaattagatatccctcgagtcaaaaaaaatgtatatagatttatcctctattttcaatttatgacaataatgctatgtttttgctttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102440" stop="106570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102740" g_stop="103019" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="289" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104636" g_length="1019"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="1308" r_length="1019" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1309" r_stop="1553" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1554" r_stop="1650" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105880" g_stop="106270" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1651" r_stop="2041" r_length="391" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E747088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2041</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102740" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAATAAGGAGAAAGGAACTATGGTAAAAGGGGGAAATATGAGATTTTGATGGACATATAAGAGTTTGTTATTTTGATATTTCAACTCTATTTTTTTTGTTTATCAAATTAGATATCCCTCGAGTCAAAAAAAATGTATATAGATTTATCCTCTATTTTCAATTTATGACAATAATGCTATGTTTTTGCTTTCAAAA</genome_strand>
        <mrna_strand>AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAATAAGGAGAAAGGAACTATGGTAAAAGGGGGAAATATGAGATTTTGATGGACATATAAGAGTTTGTTATTTTGATATTTCAACTCTATTTTTTTTGTTTATCAAATTAGATATCCCTCGAGTCAAAAAAAATGTATATAGATTTATCCTCTATTTTCAATTTATGACAATAATGCTATGTTTTTGCTTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360507" ref_strand="+" ref_description="SGN-E360507 [cLPP-8-O6]">
      <seq>caaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102740" g_stop="103019" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="289" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103906" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="578" r_length="289" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360507" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102740" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATA</genome_strand>
        <mrna_strand>CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363398" ref_strand="+" ref_description="SGN-E363398 [cLPP-4-E17]">
      <seq>caaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102740" g_stop="103019" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="289" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103798" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="470" r_length="181" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363398" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102740" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGC</genome_strand>
        <mrna_strand>CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364257" ref_strand="+" ref_description="SGN-E364257 [cLPP-20-I7]">
      <seq>caaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102740" g_stop="103019" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="289" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103737" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="409" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364257" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102740" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATT</genome_strand>
        <mrna_strand>CAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363627" ref_strand="+" ref_description="SGN-E363627 [cLPP-3-O6]">
      <seq>aaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="103019" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="288" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103966" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="637" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363627" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAA</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360421" ref_strand="+" ref_description="SGN-E360421 [cLPP-8-P20]">
      <seq>aaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="103019" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="288" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103846" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="517" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360421" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCAT</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363336" ref_strand="+" ref_description="SGN-E363336 [cLPP-4-N17]">
      <seq>aaaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102441" stop="104039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102741" g_stop="103019" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="288" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103739" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="410" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363336" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102741" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTA</genome_strand>
        <mrna_strand>AAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361842" ref_strand="+" ref_description="SGN-E361842 [cLPP-12-J11]">
      <seq>aaaaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102442" stop="104074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102742" g_stop="103019" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="287" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103774" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="444" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361842" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102742" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCA</genome_strand>
        <mrna_strand>AAAAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362296" ref_strand="+" ref_description="SGN-E362296 [cLPP-10-N23]">
      <seq>aaaaaaagattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102444" stop="104020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102743" g_stop="103019" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="286" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103721" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="390" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362296" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102743" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTG</genome_strand>
        <mrna_strand>AAAAAAAGATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364469" ref_strand="+" ref_description="SGN-E364469 [cLPP-18-K11]">
      <seq>aaaaaaaaattaaaaagttttatttagattaaataccactatctgtcaaagcccaattattaaaataaaacaaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtgtttattcacttgcaatctcaaaatgctgcaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102462" stop="103956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102743" g_stop="103019" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="286" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103656" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="325" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364469" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102743" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACC</genome_strand>
        <mrna_strand>AAAAAAAAATTAAAAAGTTTTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAACAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTGTTTATTCACTTGCAATCTCAAAATGCTGCAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362962" ref_strand="+" ref_description="SGN-E362962 [cLPP-2-E4]">
      <seq>aaaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102444" stop="104267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102744" g_stop="103019" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="285" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103967" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="635" r_length="350" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362962" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102744" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAAC</genome_strand>
        <mrna_strand>AAAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332525" ref_strand="+" ref_description="SGN-E332525 [cTOD-18-C5]">
      <seq>aaaaaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102445" stop="104225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="103019" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="284" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103925" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="592" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E332525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAG</genome_strand>
        <mrna_strand>AAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363637" ref_strand="+" ref_description="SGN-E363637 [cLPP-3-D1]">
      <seq>aaaaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgctactcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102445" stop="103934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102745" g_stop="103019" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="284" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103634" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="301" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363637" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102745" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAAT</genome_strand>
        <mrna_strand>AAAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTACTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362555" ref_strand="+" ref_description="SGN-E362555 [cLPP-1-E14]">
      <seq>aaaaaattgaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccattttgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102446" stop="104076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="103019" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="283" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103776" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="443" r_length="160" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362555" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCA-TTTGATCAAT</genome_strand>
        <mrna_strand>AAAAAATTGAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTTGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364231" ref_strand="+" ref_description="SGN-E364231 [cLPP-16-P20]">
      <seq>aaaaaattaaacaaaattatttacattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgctgggctttgccaggtatcttacattgcttttctgtaattttattatccaataatggcgtttgtgcttctcataaagattgtattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102446" stop="103971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="103019" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="283" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103671" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="337" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364231" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATG</genome_strand>
        <mrna_strand>AAAAAATTAAACAAAATTATTTACATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGCTGGGCTTTGCCAGGTATCTTACATTGCTTTTCTGTAATTTTATTATCCAATAATGGCGTTTGTGCTTCTCATAAAGATTGTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361315" ref_strand="+" ref_description="SGN-E361315 [cLPP-15-D9]">
      <seq>cccccgggctgcaggaaaaaattaaaaaaaattatttagattaaataccactatctgtgcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102446" stop="103971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102746" g_stop="103019" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="290" r_length="275" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="299" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103671" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="353" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361315" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102746" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGT-CAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATG</genome_strand>
        <mrna_strand>AAAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTGCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362420" ref_strand="+" ref_description="SGN-E362420 [cLPP-10-N20]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103967" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="632" r_length="350" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362420" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAAC</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362599" ref_strand="+" ref_description="SGN-E362599 [cLPP-1-J19]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103906" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="571" r_length="289" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362599" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATA</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359560" ref_strand="+" ref_description="SGN-E359560 [cLPP-5-K13]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103852" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="517" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359560" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGC</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361836" ref_strand="+" ref_description="SGN-E361836 [cLPP-12-F17]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103795" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="460" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361836" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATC</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329652" ref_strand="+" ref_description="SGN-E329652 [cTOD-3-B17]">
      <seq>aaaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103795" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="460" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E329652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATC</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361492" ref_strand="+" ref_description="SGN-E361492 [cLPP-6-K19]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103793" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="458" r_length="176" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361492" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGA</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363440" ref_strand="+" ref_description="SGN-E363440 [cLPP-4-I4]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103773" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="438" r_length="156" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363440" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATC</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359726" ref_strand="+" ref_description="SGN-E359726 [cLPP-5-K14]">
      <seq>aaaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaagattatggattattcatctaataaaagttctagttgggctttgccagcaatcttagtttgcttttttgtaattttattatccaataatgtggattttgctactcataaagatcttattcacttgcaatctcaaaatgctgtaaatgtgcatactgttcatcgaactggttatcattttcagaccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatgatctattctaccagtacaacaccaatggctcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatgtacccatcaaagccatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102447" stop="104071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103771" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="436" r_length="154" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359726" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGA</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAGATTATGGATTATTCATCTAATAAAAGTTCTAGTTGGGCTTTGCCAGCAATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTGGATTTTGCTACTCATAAAGATCTTATTCACTTGCAATCTCAAAATGCTGTAAATGTGCATACTGTTCATCGAACTGGTTATCATTTTCAGACCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATGATCTATTCTACCAGTACAACACCAATGGCTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATGTACCCATCAAAGCCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361258" ref_strand="+" ref_description="SGN-E361258 [cLPP-15-H19]">
      <seq>aaaaattaaaaaaaattagggggattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102469" stop="104003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102747" g_stop="103019" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="282" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103703" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="368" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361258" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102747" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCAT</genome_strand>
        <mrna_strand>AAAAATTAAAAAAAATTAGGGGGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361705" ref_strand="+" ref_description="SGN-E361705 [cLPP-12-N3]">
      <seq>aaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102448" stop="104095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="103019" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="281" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103795" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="459" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361705" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATC</genome_strand>
        <mrna_strand>AAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361502" ref_strand="+" ref_description="SGN-E361502 [cLPP-6-C2]">
      <seq>aaaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102448" stop="104093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="103019" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="281" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103793" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="457" r_length="176" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361502" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGA</genome_strand>
        <mrna_strand>AAAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331382" ref_strand="+" ref_description="SGN-E331382 [cTOD-9-K10]">
      <seq>aaaattaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102448" stop="104062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102748" g_stop="103019" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="281" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103762" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="426" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E331382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102748" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAA</genome_strand>
        <mrna_strand>AAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363317" ref_strand="+" ref_description="SGN-E363317 [cLPP-4-F15]">
      <seq>aaattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccaatacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102449" stop="104014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102749" g_stop="103019" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="280" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103714" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="377" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102749" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAA</genome_strand>
        <mrna_strand>AAATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAATACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360919" ref_strand="+" ref_description="SGN-E360919 [cLPP-13-O3]">
      <seq>aattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102450" stop="104275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="103019" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="279" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103975" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="637" r_length="358" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360919" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAA</genome_strand>
        <mrna_strand>AATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362330" ref_strand="+" ref_description="SGN-E362330 [cLPP-10-N18]">
      <seq>aattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102450" stop="104270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="103019" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="279" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103970" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="632" r_length="353" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362330" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAG</genome_strand>
        <mrna_strand>AATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363429" ref_strand="+" ref_description="SGN-E363429 [cLPP-4-E4]">
      <seq>aattaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttaatttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102450" stop="104129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102750" g_stop="103019" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="279" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103829" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="491" r_length="212" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363429" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102750" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATC</genome_strand>
        <mrna_strand>AATTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAATTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334424" ref_strand="+" ref_description="SGN-E334424 [cTOD-23-C5]">
      <seq>attaaaaaaaattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacnacccattaattatagccgatgaaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102451" stop="104263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102751" g_stop="103019" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="278" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103963" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="624" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E334424" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102751" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTAT</genome_strand>
        <mrna_strand>ATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACNACCCATTAATTATAGCCGATGAAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363737" ref_strand="+" ref_description="SGN-E363737 [cLPP-3-M21]">
      <seq>ttaaaaaaaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102452" stop="104225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102752" g_stop="103019" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="277" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103925" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="585" r_length="308" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363737" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102752" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAG</genome_strand>
        <mrna_strand>TTAAAAAAAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365208" ref_strand="+" ref_description="SGN-E365208 [cLPP-17-H18]">
      <seq>aaattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102459" stop="104086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102759" g_stop="103019" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="270" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103786" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="439" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E365208" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102759" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTG</genome_strand>
        <mrna_strand>AAATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334092" ref_strand="+" ref_description="SGN-E334092 [cTOD-21-A21]">
      <seq>aattatttagattaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102460" stop="104210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102760" g_stop="103019" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="269" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103910" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="562" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E334092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102760" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTC</genome_strand>
        <mrna_strand>AATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359764" ref_strand="+" ref_description="SGN-E359764 [cLPP-5-H8]">
      <seq>aattatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagttcttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagccccaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaaccccaatggttcattatggggttacattgtttgggctcattcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102460" stop="104009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102760" g_stop="103019" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="269" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103709" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="361" r_length="92" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359764" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102760" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTT</genome_strand>
        <mrna_strand>AATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTCTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCCAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCCAATGGTTCATTATGGGGTTACATTGTTTGGGCTCATTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363418" ref_strand="+" ref_description="SGN-E363418 [cLPP-4-A4]">
      <seq>attatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102461" stop="104095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102761" g_stop="103019" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="268" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103795" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="446" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363418" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102761" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATC</genome_strand>
        <mrna_strand>ATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363986" ref_strand="+" ref_description="SGN-E363986 [cLPP-16-I6]">
      <seq>attatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102461" stop="104094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102761" g_stop="103019" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="268" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103794" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="445" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363986" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102761" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGAT</genome_strand>
        <mrna_strand>ATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363342" ref_strand="+" ref_description="SGN-E363342 [cLPP-4-B4]">
      <seq>attatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttaaaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102461" stop="104093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102761" g_stop="103019" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="268" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103793" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="444" r_length="176" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363342" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102761" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGA</genome_strand>
        <mrna_strand>ATTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAAAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362976" ref_strand="+" ref_description="SGN-E362976 [cLPP-2-I6]">
      <seq>ttatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102462" stop="104373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102762" g_stop="103019" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="267" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104073" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="723" r_length="456" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362976" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102762" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGT</genome_strand>
        <mrna_strand>TTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361931" ref_strand="+" ref_description="SGN-E361931 [cLPP-11-I9]">
      <seq>ttatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102462" stop="104138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102762" g_stop="103019" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="267" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103838" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="488" r_length="221" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361931" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102762" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACC</genome_strand>
        <mrna_strand>TTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361086" ref_strand="+" ref_description="SGN-E361086 [cLPP-13-G20]">
      <seq>ttatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcngtacatggtctggatcagcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102462" stop="104105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102762" g_stop="103019" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="267" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103805" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="455" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361086" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102762" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATC</genome_strand>
        <mrna_strand>TTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCNGTACATGGTCTGGATCAGCAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361772" ref_strand="+" ref_description="SGN-E361772 [cLPP-12-G5]">
      <seq>ttatttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102462" stop="104095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102762" g_stop="103019" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="267" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103795" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="445" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361772" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102762" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATC</genome_strand>
        <mrna_strand>TTATTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362321" ref_strand="+" ref_description="SGN-E362321 [cLPP-10-L10]">
      <seq>tttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102465" stop="104322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102765" g_stop="103019" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="264" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104022" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="669" r_length="405" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362321" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102765" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGA</genome_strand>
        <mrna_strand>TTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361044" ref_strand="+" ref_description="SGN-E361044 [cLPP-13-C13]">
      <seq>tttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102465" stop="104240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102765" g_stop="103019" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="264" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103941" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="588" r_length="324" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361044" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102765" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCAT</genome_strand>
        <mrna_strand>TTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360451" ref_strand="+" ref_description="SGN-E360451 [cLPP-8-M11]">
      <seq>tttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102465" stop="104222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102765" g_stop="103019" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="264" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103922" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="569" r_length="305" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360451" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102765" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATC</genome_strand>
        <mrna_strand>TTTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363007" ref_strand="+" ref_description="SGN-E363007 [cLPP-2-D3]">
      <seq>ttagattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtgattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtattgcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatctagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtgtggatcaacaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatacgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102466" stop="104304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102766" g_stop="103019" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="263" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104004" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="650" r_length="387" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363007" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102766" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGG</genome_strand>
        <mrna_strand>TTAGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTGATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTGCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATCTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTGTGGATCAACAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATACGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361845" ref_strand="+" ref_description="SGN-E361845 [cLPP-12-J19]">
      <seq>agattaaataccactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102468" stop="104101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102768" g_stop="103019" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="261" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103801" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="445" r_length="184" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361845" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102768" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAAC</genome_strand>
        <mrna_strand>AGATTAAATACCACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333482" ref_strand="+" ref_description="SGN-E333482 [cTOD-20-D15]">
      <seq>ttaaatatcactatctgtcaaagcccaatcattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgaaccaacaacagcatggatgggtaaagacgggcattggagaatcgtcatgggaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102471" stop="104340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102771" g_stop="103019" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="258" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104040" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="681" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E333482" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102771" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTT</genome_strand>
        <mrna_strand>TTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGAACCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359652" ref_strand="+" ref_description="SGN-E359652 [cLPP-5-N12]">
      <seq>cactatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcgggacatggtctggatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102479" stop="104097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102779" g_stop="103019" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="250" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103797" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="430" r_length="180" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359652" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102779" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAG</genome_strand>
        <mrna_strand>CACTATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGGACATGGTCTGGATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363949" ref_strand="+" ref_description="SGN-E363949 [cLPP-16-K17]">
      <seq>tatctgggaaagcccaattattgaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102482" stop="104076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102782" g_stop="103019" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="247" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103776" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="406" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363949" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102782" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAAT</genome_strand>
        <mrna_strand>TATCTGGGAAAGCCCAATTATTGAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364590" ref_strand="+" ref_description="SGN-E364590 [cLPP-18-C9]">
      <seq>tatctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102482" stop="104073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102782" g_stop="103019" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="247" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103773" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="403" r_length="156" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364590" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102782" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATC</genome_strand>
        <mrna_strand>TATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359719" ref_strand="+" ref_description="SGN-E359719 [cLPP-5-G18]">
      <seq>atctgtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagctatcttaatttgcttttttgtaattctattatccaataatgctgggcttgcttctcataaagtttgtattcacttgcaatctcaaaatgctgtaaatgttcatactgttgatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaaagtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacatatggtgggctcattcagttgcaatagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaatcctgtacatggtctggatcaacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102483" stop="104104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102783" g_stop="103019" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="246" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103804" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="433" r_length="187" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359719" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102783" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCAT</genome_strand>
        <mrna_strand>ATCTGTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGCTATCTTAATTTGCTTTTTTGTAATTCTATTATCCAATAATGCTGGGCTTGCTTCTCATAAAGTTTGTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTGATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAAAGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATATGGTGGGCTCATTCAGTTGCAATAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATCCTGTACATGGTCTGGATCAACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362136" ref_strand="+" ref_description="SGN-E362136 [cLPP-11-O6]">
      <seq>gtcaaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102487" stop="104072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102787" g_stop="103019" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="242" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103772" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="397" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362136" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102787" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGAT</genome_strand>
        <mrna_strand>GTCAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547397" ref_strand="+" ref_description="SGN-E547397 [TUS-71-E3]">
      <seq>caaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatggatgtctcttgatcaaaacatacaatagatcccaatgcaccaatgttatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102489" stop="104321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102789" g_stop="103019" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103247" i_length="228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103248" g_stop="103284" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="268" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104021" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="673" r_length="405" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E547397" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102789" e_stop="103019"/>
          <exon e_start="103248" e_stop="103284"/>
          <exon e_start="103618" e_stop="104021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATG-TATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGG</genome_strand>
        <mrna_strand>CAAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG....................................................................................................................................................................................................................................GATGTCTCTTGATCAAAACATACAATAGATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361835" ref_strand="+" ref_description="SGN-E361835 [cLPP-12-F13]">
      <seq>aaagcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatggatgtctcttgatcaaaacatacaatagatcccaatgcaccaatgttatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102490" stop="104073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102790" g_stop="103019" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103247" i_length="228">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103248" g_stop="103284" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="267" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103773" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="424" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361835" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102790" e_stop="103019"/>
          <exon e_start="103248" e_stop="103284"/>
          <exon e_start="103618" e_stop="103773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATG-TATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATC</genome_strand>
        <mrna_strand>AAAGCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG....................................................................................................................................................................................................................................GATGTCTCTTGATCAAAACATACAATAGATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361373" ref_strand="+" ref_description="SGN-E361373 [cLPP-6-C18]">
      <seq>gcccaattattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102493" stop="104146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102793" g_stop="103019" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="236" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103846" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="465" r_length="229" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361373" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102793" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCAT</genome_strand>
        <mrna_strand>GCCCAATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362638" ref_strand="+" ref_description="SGN-E362638 [cLPP-1-H24]">
      <seq>attattaaaataaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102498" stop="104278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102798" g_stop="103019" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="231" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103978" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="592" r_length="361" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362638" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102798" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTT</genome_strand>
        <mrna_strand>ATTATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330542" ref_strand="+" ref_description="SGN-E330542 [cTOD-8-A2]">
      <seq>taaaataaaaattatggattattcatctaataaaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102508" stop="104320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102808" g_stop="103019" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="221" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104020" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="624" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E330542" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102808" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTG</genome_strand>
        <mrna_strand>TAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360639" ref_strand="+" ref_description="SGN-E360639 [cLPP-7-O24]">
      <seq>aattatggattattcatctaataaaagttctcgttgggctttgcccgttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaaggttttattcacttgccatctcaaaatgctgtaaatgttcatactgttcatcgaactggttattattttcaacccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102517" stop="103952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102817" g_stop="103019" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="212" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103652" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="247" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360639" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102817" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTC</genome_strand>
        <mrna_strand>AATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCCGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGGTTTTATTCACTTGCCATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATTATTTTCAACCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361313" ref_strand="+" ref_description="SGN-E361313 [cLPP-15-D5]">
      <seq>attattcatctaataaaagttctcgttgggctttgccagttatcttagtatgctttcttgtaattttattatccaataatgctgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102525" stop="103950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102825" g_stop="103019" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="204" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103650" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="237" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361313" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102825" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTAT</genome_strand>
        <mrna_strand>ATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTATGCTTTCTTGTAATTTTATTATCCAATAATGCTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364985" ref_strand="+" ref_description="SGN-E364985 [cLPP-17-B19]">
      <seq>aaagttctcgttgggctttgccagttatcttagtttgcttttttgtaattttattatccaataatgttgtttttgcttctcataaagtttttattcacttgcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102540" stop="104303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102840" g_stop="103019" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="189" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104003" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="575" r_length="386" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364985" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102840" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATG</genome_strand>
        <mrna_strand>AAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362643" ref_strand="+" ref_description="SGN-E362643 [cLPP-1-J20]">
      <seq>gcaatctcaaaatgctgtaaatgttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaagggtttagctataatgtacaggagtaaagactttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102640" stop="104393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102940" g_stop="103019" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="89" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104093" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="565" r_length="476" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362643" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102940" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATG</genome_strand>
        <mrna_strand>GCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAAGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334064" ref_strand="+" ref_description="SGN-E334064 [cTOD-24-H11]">
      <seq>ttcatactgttcatcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtgtatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattggagaatcgtcatgggaagtttgaggaaacacagcaggggcttagctataatgtataggagcaaagactttatgaaatgggtcaaggctaaacacccacttcactcaactaacggcactggaaactggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102663" stop="104449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102963" g_stop="103019" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="66" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104149" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="598" r_length="532" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E334064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102963" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGA</genome_strand>
        <mrna_strand>TTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360852" ref_strand="+" ref_description="SGN-E360852 [cLPP-7-J2]">
      <seq>tcgaactggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102676" stop="104266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102976" g_stop="103019" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="53" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="103966" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="402" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360852" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102976" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="103966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAA</genome_strand>
        <mrna_strand>TCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362011" ref_strand="+" ref_description="SGN-E362011 [cLPP-11-P13]">
      <seq>ggttatcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102683" stop="104376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102983" g_stop="103019" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="46" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104076" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="505" r_length="459" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362011" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102983" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATA</genome_strand>
        <mrna_strand>GGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364515" ref_strand="+" ref_description="SGN-E364515 [cLPP-18-B23]">
      <seq>atcattttcagcccgaaaaacattggatcaatgatcccaatgcaccaatgtatttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="102687" stop="104342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102987" g_stop="103019" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103276" g_stop="103284" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="42" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103618" g_stop="104042" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="467" r_length="425" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364515" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102987" e_stop="103019"/>
          <exon e_start="103276" e_stop="103284"/>
          <exon e_start="103618" e_stop="104042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTCAGCCCGAAAAACATTGGATCAATGGTATGTTTATTCCTTTTTTTCGTCTTTTTTTTATATATATATATAATAAAACGAACATGTTGTGTTTAGTCTAGATTTAATACTAGTGATTTTTTTGACGCTAACAAATAATCGAGTACTCACCATTTGTCAATAGATACATTGACATGTATTAGTATGATTTTCGTCTTTTTTCGTTGTTTCTAATATTATTTAATCTTCACTAATTTTTTTTATTTTTCTTTGAATGATGTCTCTTGGTCAAAACATACAATAGATCCCAATGGTAAGTTAACTATATTTTTGTATATTTTTTAAATTTATTTTATTCTTATTATATAATATAGGGAAAAAAGGATAAATATATCCCCGAACTATTATAAATAGTATGCACCAGTATCCTCTGTTATACTTTAGAGACATTTTTGCCGTCAAAAAACTAGAACACATATATCCTTTATTTATCCCGATATCGAATCGATTGTACCACGAGTGAAGGGTATAGCTCTAGTTTTTGGACGGTAGGGCACCTAAAGTATGACGAAGAATATCTGCAAACCATTTACAATAGTTTTGGATATATTTGTGAACTAATGATGTTTGAATTCTTTTTTCATAGCACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTG</genome_strand>
        <mrna_strand>ATCATTTTCAGCCCGAAAAACATTGGATCAATG................................................................................................................................................................................................................................................................ATCCCAATG.............................................................................................................................................................................................................................................................................................................................................CACCAATGTATTTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363755" ref_strand="+" ref_description="SGN-E363755 [cLPP-3-E14]">
      <seq>ttcaatggagtctatcatctattctaccagtacaacccaaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103329" stop="104463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103629" g_stop="104163" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363755" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103629" e_stop="104163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTT</genome_strand>
        <mrna_strand>TTCAATGGAGTCTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744861" ref_strand="+" ref_description="SGN-E744861 [GI|1771153]">
      <seq>ccttcacctgttttatcagtataatccaaatggttcagtatggggtaacattgtttgggctcattccgtttcaaaagacttgatcaattggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacctggtctggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattggagaatcgtcatgggaagtttgaggaaacacagcaggggcttagctataatgtataggagcaaagactttatgaaatgggtcaaggctaaacacccacttcactcaactaacggcactggaaactgggaatgccctgatttttacccagtttcatcgaaaggtactgatgggttggatcaatacggtgaggaacacaagtacgtgctgaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacgaaaaaagataggtacgttccagatccagattctgtcgatagtttgaagggattgagactcgattacggtaacttctacgcatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103343" stop="104671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103640" g_stop="104372" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E744861" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103640" e_stop="104372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAG</genome_strand>
        <mrna_strand>CCTTCACCTGTTTTATCAGTATAATCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365151" ref_strand="+" ref_description="SGN-E365151 [cLPP-17-D3]">
      <seq>aaatggttcagtatggggtaacattgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103367" stop="104590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103667" g_stop="104289" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E365151" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103667" e_stop="104289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAA</genome_strand>
        <mrna_strand>AAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359728" ref_strand="+" ref_description="SGN-E359728 [cLPP-5-M10]">
      <seq>attgtttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103389" stop="104463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103689" g_stop="104163" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359728" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103689" e_stop="104163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTT</genome_strand>
        <mrna_strand>ATTGTTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361852" ref_strand="+" ref_description="SGN-E361852 [cLPP-12-N15]">
      <seq>tttgggctcattcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggttacaagccagtcatcttgttcaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103393" stop="104324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103693" g_stop="104024" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361852" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103693" e_stop="104024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGA</genome_strand>
        <mrna_strand>TTTGGGCTCATTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTTACAAGCCAGTCATCTTGTTCACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360798" ref_strand="+" ref_description="SGN-E360798 [cLPP-7-B19]">
      <seq>ttcagtttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103403" stop="104477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103703" g_stop="104177" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360798" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103703" e_stop="104177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCG</genome_strand>
        <mrna_strand>TTCAGTTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361408" ref_strand="+" ref_description="SGN-E361408 [cLPP-6-F15]">
      <seq>tttcaaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacaacatgggtttagctataatgtacacgagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103408" stop="104448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103708" g_stop="104148" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361408" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103708" e_stop="104148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGG</genome_strand>
        <mrna_strand>TTTCAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAACATGGGTTTAGCTATAATGTACACGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364475" ref_strand="+" ref_description="SGN-E364475 [cLPP-18-O19]">
      <seq>caaaagacttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103411" stop="104351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103711" g_stop="104051" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364475" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103711" e_stop="104051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACAC</genome_strand>
        <mrna_strand>CAAAAGACTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364403" ref_strand="+" ref_description="SGN-E364403 [cLPP-20-K6]">
      <seq>cttaatcaactggatcaatttagaacctgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtttgtgcttaagaacagtatggatcttactcgatttgagtattatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103418" stop="104568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103718" g_stop="104268" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364403" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103718" e_stop="104268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGC-AGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACAC</genome_strand>
        <mrna_strand>CTTAATCAACTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTTTGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362034" ref_strand="+" ref_description="SGN-E362034 [cLPP-11-H22]">
      <seq>tgcaatttacccatcaaagccatttgatcaattcggtacatggtctggatcagcaacaatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103445" stop="104457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103745" g_stop="104157" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362034" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103745" e_stop="104157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTG</genome_strand>
        <mrna_strand>TGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACATGGTCTGGATCAGCAACAATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332502" ref_strand="+" ref_description="SGN-E332502 [cTOD-17-L8]">
      <seq>tggatcagcaaccatcctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattggagaatcgtcatgggaagtttgaggaaacacagcaggggcttagctataatgtataggagcaaagactttatgaaatgggtcaaggctaaacacccacttcactcaactaacggcactggaaactgggaatgccctgatttttacccagtttcatcgaaaggtactgatgggttggatcaatacggtgaggaacacaagtacgtgctgaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacgaaaaaagataggtacgttccagatccagattctgtcgatagtttgaagggattgagactcgattacggtaacttctacgcatcgaagtcattctacgatccaagcaaaaatcgaagggttatctggggttggtctaatgaatcagatatattcccagaggatgataatgcgaagggatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103490" stop="104768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103790" g_stop="104468" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E332502" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103790" e_stop="104468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCT</genome_strand>
        <mrna_strand>TGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363987" ref_strand="+" ref_description="SGN-E363987 [cLPP-16-I8]">
      <seq>ctacctggtaacaagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103506" stop="104489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103806" g_stop="104189" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363987" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103806" e_stop="104189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGAT</genome_strand>
        <mrna_strand>CTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363210" ref_strand="+" ref_description="SGN-E363210 [cLPP-19-M8]">
      <seq>ctacctggtgacgagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactatatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103506" stop="104460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103806" g_stop="104160" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363210" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103806" e_stop="104160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATT</genome_strand>
        <mrna_strand>CTACCTGGTGACGAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTATATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334020" ref_strand="+" ref_description="SGN-E334020 [cTOD-24-C12]">
      <seq>aagccagtcatcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacttatccgatccatatctccgcgaatggatcaagccagacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattggagaatcgtcatgggaagtttgaggaaacacagcaggggcttagctataatgtataggagcaaagactttatgaaatgggtcaaggctaaacacccacttcactcaactaacggcactggaaactgggaatgccctgatttttacccagtttcatcgaaaggtactgatgggttggatcaatacggtgaggaacacaagtacgtgctgaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacgaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103518" stop="104592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103818" g_stop="104292" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E334020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103818" e_stop="104292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAG</genome_strand>
        <mrna_strand>AAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331134" ref_strand="+" ref_description="SGN-E331134 [cTOD-6-N3]">
      <seq>atcttgtacaccggaatcatagatgccaaccaaacccaagtccaaaactacacaatcccatctaacttatccgatccatatctccgcgaatggatcaagccatacaacaacccattaattatagccgatgaaagtatcaacaagaccaagtttcgtgacccaacaacagcatggatgggtaaagacgggcattggagaatcgttatgggaagtttgaggaaacacagcaggggcttagctataatgtataggagcaaagactttatgaaatgggtcaaggctaaacacccacttcactcaactaacggcactggaaactgggaatgccctgatttttacccaatttcattgaaaggtactgatgggttggatcaataccgtgaggaacacaagtacgtgctgaagaacagtatggatcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103527" stop="104549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103827" g_stop="104249" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E331134" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103827" e_stop="104249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACT</genome_strand>
        <mrna_strand>ATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACACAATCCCATCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCATACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTTATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAATTTCATTGAAAGGTACTGATGGGTTGGATCAATACCGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362138" ref_strand="+" ref_description="SGN-E362138 [cLPP-11-O22]">
      <seq>atctagtacaccggaatcataggtgccaaccaaacccaagtccaaaactacgcactcccagctaacatatccgatccatatctacgcgaatggatcaagccagacaacaacgcactaattataggcgatgaaagtctcaacaagacgaaatttcgtgacccaacaacagcatggatgggtaaagatggacattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103527" stop="104322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103827" g_stop="104022" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362138" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103827" e_stop="104022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGA</genome_strand>
        <mrna_strand>ATCTAGTACACCGGAATCATAGGTGCCAACCAAACCCAAGTCCAAAACTACGCACTCCCAGCTAACATATCCGATCCATATCTACGCGAATGGATCAAGCCAGACAACAACGCACTAATTATAGGCGATGAAAGTCTCAACAAGACGAAATTTCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362627" ref_strand="+" ref_description="SGN-E362627 [cLPP-1-F6]">
      <seq>tacaccggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccaaattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103533" stop="104725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103833" g_stop="104425" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362627" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103833" e_stop="104425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGA</genome_strand>
        <mrna_strand>TACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAAATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362935" ref_strand="+" ref_description="SGN-E362935 [cLPP-2-K11]">
      <seq>cggaatcatagatgccaaccaaacccaagtccaaaactacgcaatcccagctaacatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaaaggatgggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103538" stop="104770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103838" g_stop="104470" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362935" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103838" e_stop="104470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGG</genome_strand>
        <mrna_strand>CGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAAGGATGGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360685" ref_strand="+" ref_description="SGN-E360685 [cLPP-7-B14]">
      <seq>acatatccgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtgtcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103591" stop="104463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103891" g_stop="104163" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360685" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103891" e_stop="104163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTT</genome_strand>
        <mrna_strand>ACATATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTGTCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363001" ref_strand="+" ref_description="SGN-E363001 [cLPP-2-B3]">
      <seq>cgatccatatctccgcgaatggatcaagccagacaacaacccactaattatagccgatgaaagtatcaacaagacgaaattccgtgacccaacaacagcatggatgggtaaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103598" stop="104737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103898" g_stop="104438" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363001" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103898" e_stop="104438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTC</genome_strand>
        <mrna_strand>CGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCACTAATTATAGCCGATGAAAGTATCAACAAGACGAAATTCCGTGACCCAACAACAGCATGGATGGGTAAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360177" ref_strand="+" ref_description="SGN-E360177 [cLPP-14-E7]">
      <seq>aaagatggacattggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103707" stop="104781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104007" g_stop="104481" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360177" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104007" e_stop="104481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGA</genome_strand>
        <mrna_strand>AAAGATGGACATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362617" ref_strand="+" ref_description="SGN-E362617 [cLPP-1-B24]">
      <seq>attggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103717" stop="104863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104017" g_stop="104563" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362617" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104017" e_stop="104563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCA</genome_strand>
        <mrna_strand>ATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361440" ref_strand="+" ref_description="SGN-E361440 [cLPP-6-D22]">
      <seq>attggagaattgttattggaagtttgaggaaacacagcaggggtttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103717" stop="104737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104017" g_stop="104437" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361440" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104017" e_stop="104437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATT</genome_strand>
        <mrna_strand>ATTGGAGAATTGTTATTGGAAGTTTGAGGAAACACAGCAGGGGTTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361144" ref_strand="+" ref_description="SGN-E361144 [cLPP-13-J9]">
      <seq>tttagctataatgtacaggagtaaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103761" stop="105690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104060" g_stop="104636" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105390" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="603" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361144" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104060" e_stop="104636"/>
          <exon e_start="105365" e_stop="105390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATT</genome_strand>
        <mrna_strand>TTTAGCTATAATGTACAGGAGTAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359734" ref_strand="+" ref_description="SGN-E359734 [cLPP-5-O14]">
      <seq>taaagactttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggcgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcacatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagatggttcaatggcctgttgaagaattagaaaccctaagaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103782" stop="104863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104081" g_stop="104563" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359734" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104081" e_stop="104563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCA</genome_strand>
        <mrna_strand>TAAAGACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGCGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCACATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGATGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364632" ref_strand="+" ref_description="SGN-E364632 [cLPP-18-E10]">
      <seq>actttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggcgaagaataacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgtttcagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatccaagggttatttggaggtggtcttatgaattagatatttttccataggatgataatgcgaacggatgggcctgggattcaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103786" stop="104783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104086" g_stop="104483" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364632" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104086" e_stop="104483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAA-CACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGG-CTGGGATTCAATTGATT</genome_strand>
        <mrna_strand>ACTTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGCGAAGAATAACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTTCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCCAAGGGTTATTTGGAGGTGGTCTTATGAATTAGATATTTTTCCATAGGATGATAATGCGAACGGATGGGCCTGGGATTCAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361990" ref_strand="+" ref_description="SGN-E361990 [cLPP-11-F11]">
      <seq>actttatgaagtgggttttggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgaaactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103805" stop="104777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104086" g_stop="104477" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361990" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104086" e_stop="104477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAA</genome_strand>
        <mrna_strand>ACTTTATGAAGTGGGTTTTGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAAACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359858" ref_strand="+" ref_description="SGN-E359858 [cLPP-9-O2]">
      <seq>tttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccattttggtcttgctacattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103788" stop="105816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104088" g_stop="104636" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105516" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="701" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359858" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104088" e_stop="104636"/>
          <exon e_start="105365" e_stop="105516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCA-TTTGGTCTTGCTACATTAGC</genome_strand>
        <mrna_strand>TTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATAC-AAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTTGGTCTTGCTACATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361333" ref_strand="+" ref_description="SGN-E361333 [cLPP-6-A9]">
      <seq>tttatgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103788" stop="104882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104088" g_stop="104582" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361333" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104088" e_stop="104582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAAC</genome_strand>
        <mrna_strand>TTTATGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361014" ref_strand="+" ref_description="SGN-E361014 [cLPP-13-H6]">
      <seq>tgaagtgggttaaggctaaacacccacttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103792" stop="105702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104092" g_stop="104636" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105402" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="583" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361014" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104092" e_stop="104636"/>
          <exon e_start="105365" e_stop="105402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGA</genome_strand>
        <mrna_strand>TGAAGTGGGTTAAGGCTAAACACCCACTTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359740" ref_strand="+" ref_description="SGN-E359740 [cLPP-5-L17]">
      <seq>ttcactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggcaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaatggttatttggagttggtctaacgaatcagatatttttccataggatgataatgcgaatggatgggctgggattcaattgatacctcgagaagtatggcttgatccaagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103819" stop="104813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104119" g_stop="104513" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359740" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104119" e_stop="104513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGT</genome_strand>
        <mrna_strand>TTCACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGCAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAATGGTTATTTGGAGTTGGTCTAACGAATCAGATATTTTTCCATAGGATGATAATGCGAATGGATGGGCTGGGATTCAATTGATACCTCGAGAAGTATGGCTTGATCCAAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360755" ref_strand="+" ref_description="SGN-E360755 [cLPP-7-M3]">
      <seq>tttactcaactaatggtactggaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103819" stop="104804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104119" g_stop="104504" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360755" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104119" e_stop="104504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGAT</genome_strand>
        <mrna_strand>TTTACTCAACTAATGGTACTGGAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363155" ref_strand="+" ref_description="SGN-E363155 [cLPP-19-L20]">
      <seq>gaaactgggaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggttcgttccagatccagattctgttgatagttggaaaggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggcctaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103840" stop="104726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104140" g_stop="104426" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363155" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104140" e_stop="104426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAA</genome_strand>
        <mrna_strand>GAAACTGGGAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTTCGTTCCAGATCCAGATTCTGTTGATAGTTGGAAAGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGCCTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362317" ref_strand="+" ref_description="SGN-E362317 [cLPP-10-H18]">
      <seq>gaatgccctgattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccatatccagattctgttgatagttggaagggattgagactcgattatggtaacttgtacgcatcaaagtcattctatgatccaagcaaaaatcgaacggttatttggagttggtctaatgaatcaaatatttttacagaggatgataatgcgaagggatgggctgggattcaattgattccttgtaaagtatggattgatccaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103848" stop="104811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104148" g_stop="104511" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362317" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104148" e_stop="104511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTG</genome_strand>
        <mrna_strand>GAATGCCCTGATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCATATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTGTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAACGGTTATTTGGAGTTGGTCTAATGAATCAAATATTTTTACAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTTGTAAAGTATGGATTGATCCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373644" ref_strand="+" ref_description="SGN-E373644 [TUS-33-M18]">
      <seq>gattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccaccgaaaacttggaagaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103857" stop="105840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104157" g_stop="104636" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105540" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="656" r_length="176" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E373644" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104157" e_stop="104636"/>
          <exon e_start="105365" e_stop="105540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACAC</genome_strand>
        <mrna_strand>GATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACCGAAAACTTGGAAGAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362857" ref_strand="+" ref_description="SGN-E362857 [cLPP-2-N19]">
      <seq>gattttttcccattttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103857" stop="105759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104157" g_stop="104636" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105459" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="575" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362857" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104157" e_stop="104636"/>
          <exon e_start="105365" e_stop="105459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGG</genome_strand>
        <mrna_strand>GATTTTTTCCCATTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362816" ref_strand="+" ref_description="SGN-E362816 [cLPP-2-K18]">
      <seq>gattttttcccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103857" stop="105751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104157" g_stop="104636" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105451" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="567" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362816" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104157" e_stop="104636"/>
          <exon e_start="105365" e_stop="105451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGAT</genome_strand>
        <mrna_strand>GATTTTTTCCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359853" ref_strand="+" ref_description="SGN-E359853 [cLPP-9-M4]">
      <seq>cccagtttcattgaaaggtactaatgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaactacaaggttctcttgtgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103865" stop="105899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104165" g_stop="104636" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105599" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="706" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E359853" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104165" e_stop="104636"/>
          <exon e_start="105365" e_stop="105599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTG</genome_strand>
        <mrna_strand>CCCAGTTTCATTGAAAGGTACTAATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAAC-AAACTACAAGGTTCTCTTGTGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360181" ref_strand="+" ref_description="SGN-E360181 [cLPP-14-G5]">
      <seq>atgggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaaaggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaatggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtgagaagcagttggttcaatggcctgttgaaaaattataaaccctaagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103888" stop="104861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104188" g_stop="104561" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360181" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104188" e_stop="104561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACT</genome_strand>
        <mrna_strand>ATGGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAAGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAATGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGAGAAGCAGTTGGTTCAATGGCCTGTTGAAAAATTATAAACCCTAAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360001" ref_strand="+" ref_description="SGN-E360001 [cLPP-9-D11]">
      <seq>gggttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103890" stop="104928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104190" g_stop="104628" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360001" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104190" e_stop="104628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACAC</genome_strand>
        <mrna_strand>GGGTTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361025" ref_strand="+" ref_description="SGN-E361025 [cLPP-13-L2]">
      <seq>ttggatcaatacggtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103893" stop="105842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104193" g_stop="104636" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105542" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="622" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361025" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104193" e_stop="104636"/>
          <exon e_start="105365" e_stop="105542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACAC</genome_strand>
        <mrna_strand>TTGGATCAATACGGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362038" ref_strand="+" ref_description="SGN-E362038 [cLPP-11-J8]">
      <seq>ttggatcaatattgtgaagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgattcataaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatgaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaggatgaacagtggtgaaaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103893" stop="104910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104193" g_stop="104610" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362038" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104193" e_stop="104610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTG</genome_strand>
        <mrna_strand>TTGGATCAATATTGTGAAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATTCATAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATGAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAGGATGAACAGTGGTGAAAAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361397" ref_strand="+" ref_description="SGN-E361397 [cLPP-6-O16]">
      <seq>aagaatacaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103909" stop="105737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104209" g_stop="104636" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105437" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="501" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361397" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104209" e_stop="104636"/>
          <exon e_start="105365" e_stop="105437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATA</genome_strand>
        <mrna_strand>AAGAATACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363707" ref_strand="+" ref_description="SGN-E363707 [cLPP-3-C5]">
      <seq>acaagtatgtgcttaagaacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103915" stop="105846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104215" g_stop="104636" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105546" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="604" r_length="182" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363707" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104215" e_stop="104636"/>
          <exon e_start="105365" e_stop="105546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGT</genome_strand>
        <mrna_strand>ACAAGTATGTGCTTAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362287" ref_strand="+" ref_description="SGN-E362287 [cLPP-10-J9]">
      <seq>agtatgtgcttattaacagtatggatcttactcgatttgagtattatacacttncgggttactattcataaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaacttaaaaagttcaattgagcaacaattaagatgaacaatggtgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103918" stop="104907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104218" g_stop="104607" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362287" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104218" e_stop="104607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAA-GAAGATGAACAATGGGGAGAAGA</genome_strand>
        <mrna_strand>AGTATGTGCTTATTAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTNCGGGTTACTATTCATAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTTAAAAAGTTCAATTGAGCAACAATTAAGATGAACAATGGTGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360820" ref_strand="+" ref_description="SGN-E360820 [cLPP-7-L19]">
      <seq>aacagtatggatcttactcgatttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccatcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103932" stop="105746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104232" g_stop="104636" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105446" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="487" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360820" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104232" e_stop="104636"/>
          <exon e_start="105365" e_stop="105446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCAC</genome_strand>
        <mrna_strand>AACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCATCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365091" ref_strand="+" ref_description="SGN-E365091 [cLPP-17-K17]">
      <seq>ctcgatttgagtattataccacttggaaaatacgatacaaaaaaagataggtaccgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103948" stop="105866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104248" g_stop="104636" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105566" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="593" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E365091" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104248" e_stop="104636"/>
          <exon e_start="105365" e_stop="105566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATTTGAGTATTATA-CACTTGGAAAATACGATACGAAAAAAGATAGGTA-CGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAG</genome_strand>
        <mrna_strand>CTCGATTTGAGTATTATACCACTTGGAAAATACGATACAAAAAAAGATAGGTACCGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365035" ref_strand="+" ref_description="SGN-E365035 [cLPP-17-H4]">
      <seq>atttgagtattatacacttggaaaatacgatacaaaaaaagataggtacgttccagatccagattctgttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaagcagagtcatttgatcctaaatggaatgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103952" stop="105739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104252" g_stop="104636" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105439" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="460" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E365035" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104252" e_stop="104636"/>
          <exon e_start="105365" e_stop="105439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATG</genome_strand>
        <mrna_strand>ATTTGAGTATTATACACTTGGAAAATACGATACAAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAAGCAGAGTCATTTGATCCTAAATGGAATGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329978" ref_strand="+" ref_description="SGN-E329978 [cTOD-5-J17]">
      <seq>aagataggtacgttccagatccagattctgtcgatagtttgaagggattgagactcgattacggtaacttctacgcatcgaagtcattctacgatccaagcaaaaatcgaagggttatctggggttggtctaatgaatcagatatattcccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgtggaggaactagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggggagaagattgaagttacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagctactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaagttctcttgtgttctgacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="103990" stop="105904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104290" g_stop="104636" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105604" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="587" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E329978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104290" e_stop="104636"/>
          <exon e_start="105365" e_stop="105604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCT</genome_strand>
        <mrna_strand>AAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAAGTTCTCTTGTGTTCTGACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362225" ref_strand="+" ref_description="SGN-E362225 [cLPP-11-P10]">
      <seq>ttgatagttggaagggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104019" stop="104948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104320" g_stop="104630" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362225" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104320" e_stop="104630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCA</genome_strand>
        <mrna_strand>TTGATAGTTGGAAGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362327" ref_strand="+" ref_description="SGN-E362327 [cLPP-10-N12]">
      <seq>agggattgagactcgattatggtaacttctacgcatcaaagtcattctatgatccaagcaaaaatcgaagggttatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104032" stop="106074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104332" g_stop="104636" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="550" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105708" g_stop="105774" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="617" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E362327" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104332" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTG</genome_strand>
        <mrna_strand>AGGGATTGAGACTCGATTATGGTAACTTCTACGCATCAAAGTCATTCTATGATCCAAGCAAAAATCGAAGGGTTATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E546910" ref_strand="+" ref_description="SGN-E546910 [TUS-70-I8](-)">
      <seq>atgatccaagcaaaaatcgaagggtatttggagttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctcgtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104080" stop="106372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104380" g_stop="104636" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="501" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="598" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105880" g_stop="106071" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="789" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E546910" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104380" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAA</genome_strand>
        <mrna_strand>ATGATCCAAGCAAAAATCGAAGGG-TATTTGGAGTTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTCGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATA-TGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547396" ref_strand="+" ref_description="SGN-E547396 [TUS-71-E3](-)">
      <seq>ttggtctaatgaatcagatatttttccagaggatgataatgcgaagggatgggctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctcgtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatatgaaagaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104114" stop="106380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104414" g_stop="104636" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="468" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="565" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105880" g_stop="106076" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="762" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E547396" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104414" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>TTGGTCTAATGAATCAGATATTTTTCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTCGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATGAAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363653" ref_strand="+" ref_description="SGN-E363653 [cLPP-3-J3]">
      <seq>gctgggattcaattgattcctcgtaaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagccacaagaagatgaacaatggtgaaaagattgaagtgaccaggaatcaccacccagcaccaggctgatgttgaagtgaccattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgccaccaagatgtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104166" stop="105757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104466" g_stop="104636" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.76"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105457" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="271" r_length="96" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E363653" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104466" e_stop="104636"/>
          <exon e_start="105365" e_stop="105457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTA-CAGGAATCA-CA-CCAGCA-CAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGA-CATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATG-CA-CAAGATGTTTGT</genome_strand>
        <mrna_strand>GCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCCACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACCAGGAATCACCACCCAGCACCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACCATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCCACCAAGATGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373643" ref_strand="+" ref_description="SGN-E373643 [TUS-33-M18](-)">
      <seq>taaagtatggcttgatccaagtggtaagcagttggttcaatggcctgttgaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccaccgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctcgtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104189" stop="106371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104489" g_stop="104636" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="393" r_length="245" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="490" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105880" g_stop="106069" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="680" r_length="190" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E373643" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104489" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAA</genome_strand>
        <mrna_strand>TAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTTGAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACCGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTCGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361848" ref_strand="-" ref_description="SGN-E361848 [cLPP-12-L15]">
      <seq>gaagaattagaaaccctaagaactcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104238" stop="106100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104538" g_stop="104636" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="344" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105708" g_stop="105800" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="437" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361848" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361848" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104538" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAG</genome_strand>
        <mrna_strand>GAAGAATTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361789" ref_strand="+" ref_description="SGN-E361789 [cLPP-12-M7]">
      <seq>tcaaaaggttcaattgagcaacaagaagatgaacaatggtgaaaagattgaagtgacaggaatcacaccagcacaggctgatgttgaagtgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="104261" stop="106214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104561" g_stop="104636" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105365" g_stop="105609" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="321" r_length="245" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="418" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105880" g_stop="105914" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="453" r_length="35" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361789" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104561" e_stop="104636"/>
          <exon e_start="105365" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="105914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAGGTATATATATAGACTTTTTTATTTTTAATTTATTATTATTATTATTATTACTCTCTCCGTTTTCAAAAAAAAAATATCCCTATTTTCTTTTATAGTCTCTTTAATTTAAAAAGAATGATCTATTTTCTTTTTGGATAACCTTTTAACTTTGATTTTTCACGTGAAATGTTTAAAATCACGAGATTAAAGAGCATTTTGGTTACATTTGACATAACTGAAATTTAGAAACACAAGATTAAAGGACATTTTGGTACATTTGACATAACTTGAATTTAAAACCACATAATTAAAGGGCATTTTGGTACATTTGAATTAGAACATTTTGATACATTTGACATAACATGAATTTAGAACCACAAGATTAAAAAATCTTCTTTCTTTTTTCTTAAATTTCGTTCCAAGTCAAATTAGGTCATTCTTTTTTAATTACTCCCTCCGTCTAATTTTATGTAACAACATTTGACCGGACGGAGAGTTTTAAGAAATAAATAAAACACTTTGAGATGTGTACCAAATTGCTCTCCAAAAATACTCACTTTTCTCTCTCCTCATAAATGTATTTGAGTACTATTTTTAAAATTAAGCGAGTCCAACAAGAATAAAATAGAAACTGTACTTTTAAATATTTACCATATAAAAAAATGTGATTTTTTTTTTTTGAAAACTGATCAAAAAGAAAATGATATCACTCGACGATGAAAGTGTTTAATAATGAAAAAACATGACAGGCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGG</genome_strand>
        <mrna_strand>TCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGTGAAAAGATTGAAGTGACAGGAATCACACCAGCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225360" ref_strand="+" ref_description="SGN-E225360 [cLEL-17-D13](-)">
      <seq>tgacattctcatttgcaagtttggataaggcagagtcatttgatcctaaatggaatgatatgtatgccaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagctactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggccgacaagaaattgtcactcaaaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatggagggtttatccaacattggcaattaacgacgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatggagtccgggcaaagctaagataccatataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105078" stop="106380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105378" g_stop="105609" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="328" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106078" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="527" r_length="199" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E225360" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105378" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAAT</genome_strand>
        <mrna_strand>TGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGC-CAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCCGACAAGAAATTGTCACTCAAAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATGGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTCCGGGCAAAGCTAAGATACCATATAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218044" ref_strand="+" ref_description="SGN-E218044 [cLEL-23-A5](-)">
      <seq>gtcatttgatcctaaatggaatgatatgtatgcacaagatgtttgtggactcaaaggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagctactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105112" stop="106377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105412" g_stop="105609" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="295" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106077" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="493" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E218044" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105412" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAAGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361367" ref_strand="+" ref_description="SGN-E361367 [cLPP-6-A16]">
      <seq>ctaaatggaatgatctgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaaggaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctcgtggaaagacatgtataacatccgaggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105123" stop="106346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105423" g_stop="105609" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="284" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106046" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="451" r_length="167" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E361367" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105423" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGC</genome_strand>
        <mrna_strand>CTAAATGGAATGATCTGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGGAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTCGTGGAAAGACATGTATAACATCCGAGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364258" ref_strand="+" ref_description="SGN-E364258 [cLPP-20-I9]">
      <seq>ctaaatggaatgatatgtatgcacaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagccactgaaaacttggaagaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaaggaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctcgtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105123" stop="106336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105423" g_stop="105609" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="284" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106036" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="441" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E364258" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105423" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTA</genome_strand>
        <mrna_strand>CTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCCACTGAAAACTTGGAAGAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGGAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTCGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225721" ref_strand="+" ref_description="SGN-E225721 [cLEL-17-D1](-)">
      <seq>atatgtatgccaagatgtttgtggactcaagggtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagtactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatattgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105135" stop="106380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105435" g_stop="105609" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="270" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106079" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="470" r_length="200" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E225721" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105435" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAATA</genome_strand>
        <mrna_strand>ATATGTATGC-CAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAG-TACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225386" ref_strand="+" ref_description="SGN-E225386 [cLEL-17-F17](-)">
      <seq>gtgcagatgttcaaggtgggcttgggccatttggtcttgctacattagctactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgtcgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatgccgtccgggcaaagctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105168" stop="106349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105468" g_stop="105609" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="239" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106049" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="409" r_length="170" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E225386" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105468" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAA</genome_strand>
        <mrna_strand>GTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGTCGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGCCGTCCGGGCAAAGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225547" ref_strand="+" ref_description="SGN-E225547 [cLEL-17-D1](-)">
      <seq>tgttcaaggtgggcttgggccatttggtcttgctacattagctactgaaaacttggaagaaaacacaccggttttcttccgagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatcgagggtttatccaaccttggcaattaacgacgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagataccctaccgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105175" stop="106377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105475" g_stop="105609" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="232" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106076" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="429" r_length="197" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E225547" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105475" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGA</genome_strand>
        <mrna_strand>TGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACCTTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACCCTACCGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360089" ref_strand="-" ref_description="SGN-E360089 [cLPP-14-O11]">
      <seq>gaaaacacacctgttttcttccgagttttcaaagcacaacaaaactacaaggttctcttgtgctctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagtttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatataaacttttggtgatcgtggaaagtcatgtataacattgagggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105233" stop="106349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105533" g_stop="105609" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="174" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106049" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="344" r_length="170" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360089" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360089" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105533" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAA</genome_strand>
        <mrna_strand>GAAAACACACCTGTTTTCTTCCGAGTTTTCAAAGCACAACAAAACTACAAGGTTCTCTTGTGCTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGTTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATATAAACTTTTGGTGATCGTGGAAAGTCATGTATAACATTGAGGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217968" ref_strand="+" ref_description="SGN-E217968 [cLEL-23-A5](-)">
      <seq>gagttttcaaagcacagcaaaactacaaggttctcttgtgttctgacgctaaaaggtcaactcttaagttcaatgaaacaatgtacaaagcttcatttgctggatttgttgatgttgatttggctgacaagaaattgtcactcagaagcttgattgataattcagttatagaaacttttggtgctggtggaaagacatgtataacatcgagggtttatccaacattggcaattaacgacgaggcacatttattcgcgtttaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105255" stop="106377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105555" g_stop="105609" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105708" g_stop="105804" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="152" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105880" g_stop="106077" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="350" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E217968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105555" e_stop="105609"/>
          <exon e_start="105708" e_stop="105804"/>
          <exon e_start="105880" e_stop="106077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAGGTACTACTTATTGAATTTTTAACTTGTTGGTAACGTTTTCGACGGTATAATATCGAGAAGTTGAGAAATTGACAAATCTTTTGTTTTATGTCTGATAGGTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTGGTAACTTCTCTTTCTATCGTTAATCAAAAATCTAAACGAACATTTGAATCTAAACTATTGAAATTCTTTTTGTAGATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAA</genome_strand>
        <mrna_strand>GAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG..................................................................................................GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG...........................................................................ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360882" ref_strand="+" ref_description="SGN-E360882 [cLPP-13-A23]">
      <seq>aaagacatgtataacatcgagggtttatccaacattggcaattaacgacaaggcacatttattcgcgttcaacaacggaacggagccaatcacaattgagagtttggatgcatggagtatgggcaaagctaagatacaatattgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="105618" stop="106372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105918" g_stop="106071" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E360882" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105918" e_stop="106071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAA</genome_strand>
        <mrna_strand>AAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACAAGGCACATTTATTCGCGTTCAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225196" ref_strand="-" ref_description="SGN-E225196 [cLEL-17-L14](-)">
      <seq>tttttttttttttttttttggaaaatctacaaaacattgaaaggtataaaatgtttggtaagtcagaatacattagcataaatattggagctcacagagtcatttgctgactcttgcatatacataattcctccttatcattaacaaagtagaaataaatatgatatatactatgaaaacacaaataagtcaaacataaaaaaagagatgaactttgtaatgaatggacacagaaaactgatctgttgctgttgctcagacagacgaaacatgttgcctcagctgtgtcgaaaaaaaagaaacaagatgatgtgggaacaaaggttcttgaattatgttggcaagtcagaatatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="1843" stop="107651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106303" g_stop="106320" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106321" i_stop="107012" i_length="692">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107013" g_stop="107351" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="356" r_length="338" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E225196" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225196" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106303" e_stop="106320"/>
          <exon e_start="107013" e_stop="107351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTTATTTTATTGATATATCTTTTAAATTTTAAATTTTAATATTTTATTTTATTATTATATTTACATAGCTACAGAATGGTCTAACAAATAAAAGAAGTTTGTCATTGAAAGGAAATAATTGGTTAAATCTTATCTGAAAAATAGTTTCAGATTATTTTTTAACATAGTTTTATTTTTCAGATAACATAGTTTGAGATAATGTTAAATAATATGATGTTGCATTGGGTATTTCCTGGATAAATAATTCATCTTTTGTTTCTACAGAGTTAAATAAAAATAGCAACCATCTTATTTTGAAGAAAGTGTTTTAATATTTTTTCGTTCAATTGTTTTTTCCAACTAAATAAATTGTATAACAAGAAGAAGCTCAAATGGACAAAATTTGTTTCTGATAAATTGTATTCAAACAAAAGTACAATTAGTGCTTTTTAGAGAATCCAGTTCCGGCGGAAGATTAAGTAAGGTGCGGTATAAAGACCAATCAATTTCCTACAACAGACAATAGAGGGCTCTGACGTGACCACGGTCAATGAGACTATTGTTCTGATTCTATAGAGTCTAACCTTGAAAAGAAAAGACTCGTTGTTTTTAAGCCTGGTCCAGGTGTGGGAGCTATACTTGATATACAAGTCGACTCGTGAACTACGGAGTACTCCAAATGTTTTACCAAACAGAAGAACAATGGGCAAACACCAATCCTGAGAAGTGGTAAAATCTACAAAACATTGAAAGGTATAAAATGTTTGGTAAGTCAGAATACATTAGCATAAATATTGGAGCTCACAGAGTCATTTGCTGACTCTTGCATATACATAATTCCTCCTTATCATTAACAAAGTAGAAATAAATATGATATATACTATGAAAACACAAATAAGTCAAACAAAAAAAAAGAGATGAACTTTGTAATGAATGGACACAGAAAACTGATCTGTTGCTGTTGCTCAGACAGACGAAACATGTTGCCTCAGCTGTGTCGAAAAAAAAGAAACAAGATGATGTGGGAACAAAGGTTCTTGAATTATGTTGGCAAGTCAGAATATCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-AAAATCTACAAAACATTGAAAGGTATAAAATGTTTGGTAAGTCAGAATACATTAGCATAAATATTGGAGCTCACAGAGTCATTTGCTGACTCTTGCATATACATAATTCCTCCTTATCATTAACAAAGTAGAAATAAATATGATATATACTATGAAAACACAAATAAGTCAAACATAAAAAAAGAGATGAACTTTGTAATGAATGGACACAGAAAACTGATCTGTTGCTGTTGCTCAGACAGACGAAACATGTTGCCTCAGCTGTGTCGAAAAAAAAGAAACAAGATGATGTGGGAACAAAGGTTCTTGAATTATGTTGGCAAGTCAGAATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251861" ref_strand="+" ref_description="SGN-E251861 [cLEG-14-B16]">
      <seq>aaaagttcattattaacattactaacagaagattttgatgtaaattattattaaatatataatttggcttcttttggcatttatagttaattttaggtaggtatgggaatgatgaatatctgttgtgtgaagggagaactccctgttgaatgtttacactaactgcttattgatattctgagctttctcttttgatattgtgcatccataatgtatttgtttccactctttctttcttcctggtgtattttttgtgtgtaggtgatctgctaatacactttggtaattcaatttatggcaagaatgatgagtctattagatgtgccagggttttttccccaatgagctaaaacttctgaggcttattgatattctgacttgccaacataattcaagaacctttgttcccacatcatcttgtttcttttttttcgacacagctgaggcaacatgtttcgtctgtctgagcaacagcaacagatcagttttctgtgtccattcattacaaagttcatctcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="108017" stop="106893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107717" g_stop="107193" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E251861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107717" e_stop="107193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTTCATTATTAACATTACTAACAGAAGATTTTGATGTAAATTATTATTAAATATATAATTTGGCTTCTTTTGGCATTTATAGTTAATTTTAGGTAGGTATGGGAATGATGAATATCTGTTGTGTGAAGGGAGAACTCCCTGTTGAATGTTTACACTAACTGCTTATTGATATTCTGAGCTTTCTCTTTTGATATTGTGCATCCATAATGTATTTGTTTCCACTCTTTCTTTCTTCCTGGTGTATTTTTTGTGTGTAGGTGATCTGCTAATACACTTTGGTAATTCAATTTATGGCAAGAATGATGAGTCTATTAGATGTGCCAGGGTTTTTTCCCCAATGAGCTAAAACTTCTGAGGCTTATTGATATTCTGACTTGCCAACATAATTCAAGAACCTTTGTTCCCACATCATCTTGTTTCTTTTTTTTCGACACAGCTGAGGCAACATGTTTCGTCTGTCTGAGCAACAGCAACAGATCAGTTTTCTGTGTCCATTCATTACAAAGTTCATCTCTTTTTTT</genome_strand>
        <mrna_strand>AAAAGTTCATTATTAACATTACTAACAGAAGATTTTGATGTAAATTATTATTAAATATATAATTTGGCTTCTTTTGGCATTTATAGTTAATTTTAGGTAGGTATGGGAATGATGAATATCTGTTGTGTGAAGGGAGAACTCCCTGTTGAATGTTTACACTAACTGCTTATTGATATTCTGAGCTTTCTCTTTTGATATTGTGCATCCATAATGTATTTGTTTCCACTCTTTCTTTCTTCCTGGTGTATTTTTTGTGTGTAGGTGATCTGCTAATACACTTTGGTAATTCAATTTATGGCAAGAATGATGAGTCTATTAGATGTGCCAGGGTTTTTTCCCCAATGAGCTAAAACTTCTGAGGCTTATTGATATTCTGACTTGCCAACATAATTCAAGAACCTTTGTTCCCACATCATCTTGTTTCTTTTTTTTCGACACAGCTGAGGCAACATGTTTCGTCTGTCTGAGCAACAGCAACAGATCAGTTTTCTGTGTCCATTCATTACAAAGTTCATCTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207863" ref_strand="+" ref_description="SGN-E207863 [cLEC-34-G15]">
      <seq>gaagttacacgtcaggatatagcccatactttttgtcgagtcacatccgatgttgattctacttttttctagttgaggtggaatttgtgctatatttagcctttgctatggccagcatgatgaaaaacaattagatgtgcgagtggtgaattcctctatgagctcaatcatagaggcttattgatatactgacttgcatttgtgattcactctcttattttttgatttacatggtgttcattgatcccttaatttttgttggacctaactatgactataaaagttcattctttacattactaacagaagattttgatgtaaatgattattaaatatataatttggcttcttttggcatttatagctaattttaagtaggtatgggaatgatgaatatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="108295" stop="107296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107995" g_stop="107596" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E207863" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107995" e_stop="107596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTACACGTCAGGATATAGCCCATACTTTTTGTGGTGTCACATCCGTTGTTGATTCTACTTTTTTCTAGTTGAGGTGGAATTTGTGCTATATTTAGCCTTTGCTATGGCAAGCATGATGAAAAACAATTAGATGTGCGAGTGGTGAATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCATTTGTGATTCACTCTTTTATTTTTTGATTTACATGGTGTTCATTGATCCCTTAATTTTTGTTGGACCTAACTATGACTATAAAAGTTCATTATTAACATTACTAACAGAAGATTTTGATGTAAATTATTATTAAATATATAATTTGGCTTCTTTTGGCATTTATAGTTAATTTTAGGTAGGTATGGGAATGATGAATATCTG</genome_strand>
        <mrna_strand>GAAGTTACACGTCAGGATATAGCCCATACTTTTTGTCGAGTCACATCCGATGTTGATTCTACTTTTTTCTAGTTGAGGTGGAATTTGTGCTATATTTAGCCTTTGCTATGGCCAGCATGATGAAAAACAATTAGATGTGCGAGTGGTGAATTCCTCTATGAGCTCAATCATAGAGGCTTATTGATATACTGACTTGCATTTGTGATTCACTCTCTTATTTTTTGATTTACATGGTGTTCATTGATCCCTTAATTTTTGTTGGACCTAACTATGACTATAAAAGTTCATTCTTTACATTACTAACAGAAGATTTTGATGTAAATGATTATTAAATATATAATTTGGCTTCTTTTGGCATTTATAGCTAATTTTAAGTAGGTATGGGAATGATGAATATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340059" ref_strand="+" ref_description="SGN-E340059 [cTOF-3-F9]">
      <seq>ctgttgaaaatgaaagttgctatctttttgttccaacaaaagatgctttgaatctccctaatttagatgtggtttgcagtatatttctatttatattcataacataactttgctatggcaagaatgatgataaactattagatgtgtgagtggtgtattcctctatgagctcaatcatcgaggcttattgatattctgacttgccttcttaaagtacttacaatagaaataaatggaactttttaattttgtgttctacaaatatgcttcattattgcatttgtactaatttttcacttgaagttgtagcaaattgttaagttgaaatatttatctgatttagaccttaactgaagttacacgtcaggatatagcccatactttttgtggtgtcacatccgttgttgattctacttttttctagttgaggtggaatttgtgctatatttagcctttgctatggcaagcatgatgaaaaacaattagatgtgcgagtggtgaattcctctatgagctcaatcatcgaggcttattgatattctgacttgcatttgtgattcactcttttattttttgatttacatggtgttcattgatcccttaatttttgttggacctaactatgactataaaagttcattattaacattactaacagaagattntgatgtaaattattattaaatatataattttggcttcttttggcatttatagttaattttaggtaggtatgggaatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="108647" stop="107303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108347" g_stop="107603" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E340059" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108347" e_stop="107603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGAAAATGAAAGTTGCTATCTTTTTGTTCCAACAAAAGATGCTTTGAATCTCCCTAATTTAGATGTGGTTTGCAGTATATTTCTATTTATATTCATAACATAACTTTGCTATGGCAAGAATGATGATAAACTATTAGATGTGTGAGTGGTGTATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCCTTCTTAAAGTACTTACAATAGAAATAAATGGAACTTTTTAATTTTGTGTTCTACAAATATGCTTCATTATTGCATTTGTACTAATTTTTCACTTGAAGTTGTAGCAAATTGTTAAGTTGAAATATTTATCTGATTTAGACCTTAACTGAAGTTACACGTCAGGATATAGCCCATACTTTTTGTGGTGTCACATCCGTTGTTGATTCTACTTTTTTCTAGTTGAGGTGGAATTTGTGCTATATTTAGCCTTTGCTATGGCAAGCATGATGAAAAACAATTAGATGTGCGAGTGGTGAATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCATTTGTGATTCACTCTTTTATTTTTTGATTTACATGGTGTTCATTGATCCCTTAATTTTTGTTGGACCTAACTATGACTATAAAAGTTCATTATTAACATTACTAACAGAAGATTTTGATGTAAATTATTATTAAATATATAA-TTTGGCTTCTTTTGGCATTTATAGTTAATTTTAGGTAGGTATGGGAATGATGA</genome_strand>
        <mrna_strand>CTGTTGAAAATGAAAGTTGCTATCTTTTTGTTCCAACAAAAGATGCTTTGAATCTCCCTAATTTAGATGTGGTTTGCAGTATATTTCTATTTATATTCATAACATAACTTTGCTATGGCAAGAATGATGATAAACTATTAGATGTGTGAGTGGTGTATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCCTTCTTAAAGTACTTACAATAGAAATAAATGGAACTTTTTAATTTTGTGTTCTACAAATATGCTTCATTATTGCATTTGTACTAATTTTTCACTTGAAGTTGTAGCAAATTGTTAAGTTGAAATATTTATCTGATTTAGACCTTAACTGAAGTTACACGTCAGGATATAGCCCATACTTTTTGTGGTGTCACATCCGTTGTTGATTCTACTTTTTTCTAGTTGAGGTGGAATTTGTGCTATATTTAGCCTTTGCTATGGCAAGCATGATGAAAAACAATTAGATGTGCGAGTGGTGAATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCATTTGTGATTCACTCTTTTATTTTTTGATTTACATGGTGTTCATTGATCCCTTAATTTTTGTTGGACCTAACTATGACTATAAAAGTTCATTATTAACATTACTAACAGAAGATTNTGATGTAAATTATTATTAAATATATAATTTTGGCTTCTTTTGGCATTTATAGTTAATTTTAGGTAGGTATGGGAATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334450" ref_strand="+" ref_description="SGN-E334450 [cTOD-23-M1]">
      <seq>ttaaaaattgttttttttgtatgtgaagtgtgtatgatgcgtggattgatcaaaatgctattgggtatgcattaatttctcttaaagatgtgatttttggaatatgttgcaacattttgatcgattggagctatataacaaagtgtgttgtgtatggattaatttgtttcattttgcgccgcccttaagatcgccttccattatgctccatggaagcgttttgagtcatagctgcgctatattaattgtatatatgcacactcttttgtatgtacaattgtatatatgaaaggtgtgttatatgctggagttttctctttagggttttcctttagtgagtctccttttgcctcgccttatttcaggagtcatatcctttttttttggttttgtctttcccaattggggatatagaaccaaaagatgttttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="110021" stop="108987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109721" g_stop="109287" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E334450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109721" e_stop="109287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAATTGTTTTTTTTGTATGTGAAGTGTGTATGATGCGTGGATTGATCAAAATGCTATTGGGTATGCATTAATTTCTCTTAAAGATGTGATTTTTGGAATATGTTGCAACATTTTGATCGATTGGAGCTATATAACAAAGTGTGTTGTGTATGGATTAATTTGTTTCATTTTGCGCCGCCCTTAAGATCGCCTTCCATTATGCTCCATGGAAGCGTTTTGAGTCATAGCTGCGCTATATTAATTGTATATATGCACACTCTTTTGTATGTACAATTGTATATATGAAAGGTGTGTTATATGCTGGAGTTTTCTCTTTAGGGTTTTCCTTTAGTGAGTCTCCTTTTGCCTCGCCTTATTTCAGGAGTCATATCCTTTTTTTTTGGTTTTGTCTTTCCCAATTGGGGATATAGAACCAAAAGATGTTTTGAATG</genome_strand>
        <mrna_strand>TTAAAAATTGTTTTTTTTGTATGTGAAGTGTGTATGATGCGTGGATTGATCAAAATGCTATTGGGTATGCATTAATTTCTCTTAAAGATGTGATTTTTGGAATATGTTGCAACATTTTGATCGATTGGAGCTATATAACAAAGTGTGTTGTGTATGGATTAATTTGTTTCATTTTGCGCCGCCCTTAAGATCGCCTTCCATTATGCTCCATGGAAGCGTTTTGAGTCATAGCTGCGCTATATTAATTGTATATATGCACACTCTTTTGTATGTACAATTGTATATATGAAAGGTGTGTTATATGCTGGAGTTTTCTCTTTAGGGTTTTCCTTTAGTGAGTCTCCTTTTGCCTCGCCTTATTTCAGGAGTCATATCCTTTTTTTTTGGTTTTGTCTTTCCCAATTGGGGATATAGAACCAAAAGATGTTTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688112" ref_strand="+" ref_description="SGN-E688112 [T3_tus_85_L05]">
      <seq>cttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttataaagctttatttcattatggataaaaaaaaaaaaaaaaaaaaaaacctcgggggggggcccgggcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113800" stop="100564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113500" g_stop="113444" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="177" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="223" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="309" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="439" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110914" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="778" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110913" i_stop="110335" i_length="579">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110334" g_stop="110284" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="826" r_length="48" r_score="0.510"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E688112" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113500" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110914"/>
          <exon e_start="110334" e_stop="110284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGATATATACTTGATAAAACGAATTGCATAAACAACTGTTTTCAGGACGTTGTATAGTCGAAATTTATAAAGATGAAATTGAGATTTTGAAATTATACAATTTTAGTATAAATATTTGAATAAAATCATTCAAAGATTAACTATTATTTCAAAGTAAAACATGGAATAAAGTTTAACCCCCAAATAGTATTTTGAAACAAGCTATGTTTGAAATAAAAAGATACCTTTCAATAACAAATTGGAAAATTAGGAAGTCTTATATTAAAGACTAGTAAAAACAACTTTTACATGCATTATTTACTTGAAGAGGAAAGACTCAAATATGTCATCGTATTAAAAATTTGACTCATCATTCATATCATTATTTGTTAATTGAAATGATATATATGAATCAATTTTTTTTTAAAATGACATAAATGAATCTTTTTTTTTTTATAAGTTTGATGACATGCTTGAGTTTTTGTCCTTTTTAAAACGTGATTTAATTAATGTCATCCATATCACATGTAAAAGATAATTTTGCAAAATCAAAACTGTTTTTAGGTAACAAATAATGACATGGATAAATTTTTTTTATAAAAAGAAAAATGACATAAATAAACTAAACTTTTAACGATTGATGTACATGAATCTT</genome_strand>
        <mrna_strand>CTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAC--CT-CGGGGGGGGGCCCGGGCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355415" ref_strand="+" ref_description="SGN-E355415 [cTOS-25-E6]">
      <seq>gaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="111696" stop="1843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111396" g_stop="111380" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111252" g_stop="110970" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="300" r_length="283" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110969" i_stop="110375" i_length="595">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.256" a_score="0.52"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110374" g_stop="110312" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="363" r_length="63" r_score="0.556"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E355415" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111396" e_stop="111380"/>
          <exon e_start="111252" e_stop="110970"/>
          <exon e_start="110374" e_stop="110312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGATATATACTTGATAAAACGAATTGCATAAACAACTGTTTTCAGGACGTTGTATAGTCGAAATTTATAAAGATGAAATTGAGATTTTGAAATTATACAATTTTAGTATAAATATTTGAATAAAATCATTCAAAGATTAACTATTATTTCAAAGTAAAACATGGAATAAAGTTTAACCCCCAAATAGTATTTTGAAACAAGCTATGTTTGAAATAAAAAGATACCTTTCAATAACAAATTGGAAAATTAGGAAGTCTTATATTAAAGACTAGTAAAAACAACTTTTACATGCATTATTTACTTGAAGAGGAAAGACTCAAATATGTCATCGTATTAAAAATTTGACTCATCATTCATATCATTATTTGTTAATTGAAATGATATATATGAATCAATTTTTTTTTAAAATGACATAAATGAATCTTTTTTTTTTTATAAGTTTGATGACATGCTTGAGTTTTTGTCCTTTTTAAAACGTGATTTAATTAATGTCATCCATATCACATGTAAAAGATAATTTTGCAAAATCAAAACTGTTTTTAGGTAACAAATAATGACATGGATAAATTTTTTTTATAAAAAGAAAAATGACATAAATAAACTAAA</genome_strand>
        <mrna_strand>GAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301654" ref_strand="-" ref_description="SGN-E301654 [cLEW-23-I16]">
      <seq>ttttttttttttttttttttttttttttttttttttatccaacaattagcctgcataaaccaaatttaagagaacttaactatctcgaaaagctggcaaactcaaaatgaaggtggtttcgaaaccaaaagtgctcaactacagagtgttcagaaatcaaatgtaaatagatatcgaaagctgcatttttcgacaacaatattttcctccaatttgcaacatgctgcagaaaagagaaagagtcttcacagcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="1843" stop="111495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110314" g_stop="110340" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.704"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110341" i_stop="110966" i_length="626">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110967" g_stop="111195" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="256" r_length="229" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E301654" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>256</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301654" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110314" e_stop="110340"/>
          <exon e_start="110967" e_stop="111195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTATTTATGTCATTTTTCTTTTTATAAAAAAAATTTATCCATGTCATTATTTGTTACCTAAAAACAGTTTTGATTTTGCAAAATTATCTTTTACATGTGATATGGATGACATTAATTAAATCACGTTTTAAAAAGGACAAAAACTCAAGCATGTCATCAAACTTATAAAAAAAAAAAGATTCATTTATGTCATTTTAAAAAAAAATTGATTCATATATATCATTTCAATTAACAAATAATGATATGAATGATGAGTCAAATTTTTAATACGATGACATATTTGAGTCTTTCCTCTTCAAGTAAATAATGCATGTAAAAGTTGTTTTTACTAGTCTTTAATATAAGACTTCCTAATTTTCCAATTTGTTATTGAAAGGTATCTTTTTATTTCAAACATAGCTTGTTTCAAAATACTATTTGGGGGTTAAACTTTATTCCATGTTTTACTTTGAAATAATAGTTAATCTTTGAATGATTTTATTCAAATATTTATACTAAAATTGTATAATTTCAAAATCTCAATTTCATCTTTATAAATTTCGACTATACAACGTCCTGAAAACAGTTGTTTATGCAATTCGTTTTATCAAGTATATATCCATAATGAAATAAAGCTTTATAACTAACAGAATTGTGAAGATAAAAAGAGTATAAATTTATCCAACAATTAGCCTGCATAAACCAAATTTAAGAGAACTTAACTATCTCGAAAAGCTGGCAAACTCAAAATGAAGGTGGTTTCGAAACCAAAAGTGCTCAACTACAGAGTGTTCAGAAATCAAATGTAAATAGATATCGAAAGCTGCATTTTTCGACAACAATATTTTCCTCCAATTTGCAACATGCTGCAGAAAAGAGAAAGAGTCTTCACAGCCTCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTATCCAACAATTAGCCTGCATAAACCAAATTTAAGAGAACTTAACTATCTCGAAAAGCTGGCAAACTCAAAATGAAGGTGGTTTCGAAACCAAAAGTGCTCAACTACAGAGTGTTCAGAAATCAAATGTAAATAGATATCGAAAGCTGCATTTTTCGACAACAATATTTTCCTCCAATTTGCAACATGCTGCAGAAAAGAGAAAGAGTCTTCACAGCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E224691" ref_strand="-" ref_description="SGN-E224691 [cLEL-27-J11](-)">
      <seq>ttttttttttttttttttttttttttttngggaagataaaaagagtgtaaatttatccaacaattagcctgcataaaccaaatttaagagaacttaactatctcgaaaagctggcaaactaaaaatgaaggtggtttcgaaaccaaaagtgctcaactacagagtgttcagaaatcaaatgtaaatagatatcgaaagctgcatttttcgacaacaatattttcctacaatgggaaacatgctgcagaaaagagaaagagtttggacacaccaacattcttttctaccaccctttctgcgagtacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="+" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="1843" stop="111527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110316" g_stop="110340" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.720"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110341" i_stop="110946" i_length="606">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110947" g_stop="111227" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="307" r_length="282" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="+" ref_id="SGN-E224691" ref_strand="-">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224691" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="110316" e_stop="110340"/>
          <exon e_start="110947" e_stop="111227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTTATGTCATTTTTCTTTTTATAAAAAAAATTTATCCATGTCATTATTTGTTACCTAAAAACAGTTTTGATTTTGCAAAATTATCTTTTACATGTGATATGGATGACATTAATTAAATCACGTTTTAAAAAGGACAAAAACTCAAGCATGTCATCAAACTTATAAAAAAAAAAAGATTCATTTATGTCATTTTAAAAAAAAATTGATTCATATATATCATTTCAATTAACAAATAATGATATGAATGATGAGTCAAATTTTTAATACGATGACATATTTGAGTCTTTCCTCTTCAAGTAAATAATGCATGTAAAAGTTGTTTTTACTAGTCTTTAATATAAGACTTCCTAATTTTCCAATTTGTTATTGAAAGGTATCTTTTTATTTCAAACATAGCTTGTTTCAAAATACTATTTGGGGGTTAAACTTTATTCCATGTTTTACTTTGAAATAATAGTTAATCTTTGAATGATTTTATTCAAATATTTATACTAAAATTGTATAATTTCAAAATCTCAATTTCATCTTTATAAATTTCGACTATACAACGTCCTGAAAACAGTTGTTTATGCAATTCGTTTTATCAAGTATATATCCATAATGAAATAAAGCTTTATAACTAACAGAATTGTGAAGATAAAAAGAGTATAAATTTATCCAACAATTAGCCTGCATAAACCAAATTTAAGAGAACTTAACTATCTCGAAAAGCTGGCAAACTCAAAATGAAGGTGGTTTCGAAACCAAAAGTGCTCAACTACAGAGTGTTCAGAAATCAAATGTAAATAGATATCGAAAGCTGCATTTTTCGACAACAATATTTTCCTCCAATTTGCAACATGCTGCAGAAAAGAGAAAGAGTCTTCACA-GCCTCCTTCCCCTTCTACCACCCTTTCTGCGAGTACTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTNGGGAAGATAAAAAGAGTGTAAATTTATCCAACAATTAGCCTGCATAAACCAAATTTAAGAGAACTTAACTATCTCGAAAAGCTGGCAAACTAAAAATGAAGGTGGTTTCGAAACCAAAAGTGCTCAACTACAGAGTGTTCAGAAATCAAATGTAAATAGATATCGAAAGCTGCATTTTTCGACAACAATATTTTCCTACAATGGGAAACATGCTGCAGAAAAGAGAAAGAGTTTGGACACACCAACATTCTTTTCTACCACCCTTTCTGCGAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545733" ref_strand="+" ref_description="SGN-E545733 [TUS-68-L19](-)">
      <seq>tttcttcaagctgctgagtatctctgattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="1845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="179" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="225" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="311" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110974" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="720" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="110973" i_stop="110375" i_length="599">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.256" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="110374" g_stop="110361" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="734" r_length="14" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E545733" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110974"/>
          <exon e_start="110374" e_stop="110361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGATATATACTTGATAAAACGAATTGCATAAACAACTGTTTTCAGGACGTTGTATAGTCGAAATTTATAAAGATGAAATTGAGATTTTGAAATTATACAATTTTAGTATAAATATTTGAATAAAATCATTCAAAGATTAACTATTATTTCAAAGTAAAACATGGAATAAAGTTTAACCCCCAAATAGTATTTTGAAACAAGCTATGTTTGAAATAAAAAGATACCTTTCAATAACAAATTGGAAAATTAGGAAGTCTTATATTAAAGACTAGTAAAAACAACTTTTACATGCATTATTTACTTGAAGAGGAAAGACTCAAATATGTCATCGTATTAAAAATTTGACTCATCATTCATATCATTATTTGTTAATTGAAATGATATATATGAATCAATTTTTTTTTAAAATGACATAAATGAATCTTTTTTTTTTTATAAGTTTGATGACATGCTTGAGTTTTTGTCCTTTTTAAAACGTGATTTAATTAATGTCATCCATATCACATGTAAAAGATAATTTTGCAAAATCAAAACTGTTTTTAGGTAACAAATAATGA</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTG-ATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E203238" ref_strand="-" ref_description="SGN-E203238 [cLEB-3-E17]">
      <seq>aactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttaaaaaaaaaaaaaaaaaactcgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113370" stop="1830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113070" g_stop="113051" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="106" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="236" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111252" g_stop="110950" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="539" r_length="303" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110949" i_stop="110651" i_length="299">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110650" g_stop="110626" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="564" r_length="25" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E203238" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113070" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110950"/>
          <exon e_start="110650" e_stop="110626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGATATATACTTGATAAAACGAATTGCATAAACAACTGTTTTCAGGACGTTGTATAGTCGAAATTTATAAAGATGAAATTGAGATTTTGAAATTATACAATTTTAGTATAAATATTTGAATAAAATCATTCAAAGATTAACTATTATTTCAAAGTAAAACATGGAATAAAGTTTAACCCCCAAATAGTATTTTGAAACAAGCTATGTTTGAAATAAAAAGATACCTTTCAATAACAAATTGGAAAATTAGGAAGTCTTATATTAAAGACTAGTAAAAACAACTTTTACATGC</genome_strand>
        <mrna_strand>AACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTAAAA...........................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAACTCGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721847" ref_strand="+" ref_description="SGN-E721847 [FC15BH08]">
      <seq>aatcggccgaattgccactgcaaattagggtttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttataaagctttatttcattatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113821" stop="110614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113533" g_stop="113444" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="210" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="256" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="342" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="472" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110914" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="811" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E721847" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113533" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTGTGAGCTTCCACTGCAAATTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGCCACTGCAAATTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346787" ref_strand="+" ref_description="SGN-E346787 [cTOF-32-C18]">
      <seq>agctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacattctgttagttataaagctttatttcattatggataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113795" stop="110609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113495" g_stop="113444" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="172" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="218" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="304" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="434" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110914" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="772" r_length="338" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="782"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E346787" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113495" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</genome_strand>
        <mrna_strand>AGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCAC-ATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339097" ref_strand="+" ref_description="SGN-E339097 [cTOF-6-M21]">
      <seq>aacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttataaagctttatttcattatggataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="111761" stop="110609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111461" g_stop="111380" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111252" g_stop="110914" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="421" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E339097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111461" e_stop="111380"/>
          <exon e_start="111252" e_stop="110914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</genome_strand>
        <mrna_strand>AACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251038" ref_strand="-" ref_description="SGN-E251038 [cLEG-17-L15]">
      <seq>gcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttataaagctttatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113531" stop="110623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113231" g_stop="113196" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="82" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="168" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="298" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="110922" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="629" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E251038" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251038" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113231" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCA</genome_strand>
        <mrna_strand>GCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250400" ref_strand="+" ref_description="SGN-E250400 [cLEG-6-D5]">
      <seq>gtggaagagaaactatggttcgcattactggtggaatgaaagtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaagatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttataaagctttatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113379" stop="110622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113080" g_stop="113051" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="116" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="246" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111252" g_stop="110922" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="577" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E250400" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113080" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCA</genome_strand>
        <mrna_strand>GTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAAGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252705" ref_strand="-" ref_description="SGN-E252705 [cLEG-16-G6]">
      <seq>tgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttataaagctttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113550" stop="110624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113250" g_stop="113196" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="101" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="187" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="317" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="110924" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="646" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E252705" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252705" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113250" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTT</genome_strand>
        <mrna_strand>TGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302621" ref_strand="+" ref_description="SGN-E302621 [cLEX-1-I13](-)">
      <seq>cggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113538" stop="110633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113238" g_stop="113196" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="89" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="175" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="305" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="110927" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="631" r_length="326" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E302621" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113238" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTA</genome_strand>
        <mrna_strand>CGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328964" ref_strand="+" ref_description="SGN-E328964 [cTOC-24-L24]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttagttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="110633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110934" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="757" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E328964" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAA</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284928" ref_strand="-" ref_description="SGN-E284928 [cLER-19-H12]">
      <seq>gtcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcacaattctgttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113516" stop="110641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113217" g_stop="113196" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="68" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="154" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="284" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="110935" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="602" r_length="318" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E284928" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113217" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATA</genome_strand>
        <mrna_strand>GTCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216159" ref_strand="+" ref_description="SGN-E216159 [cLEL-13-O16](-)">
      <seq>ggcacgagggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcaaaaaaaaaaaaaaaactcgactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="111516" stop="110649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111216" g_stop="110950" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="268" polyA_stop="281"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E216159" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111216" e_stop="110950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACA</genome_strand>
        <mrna_strand>GGCACGAGGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E216401" ref_strand="+" ref_description="SGN-E216401 [cLEL-13-O6](-)">
      <seq>gggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttatcttcaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="111508" stop="110649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111209" g_stop="110950" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="274"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E216401" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111209" e_stop="110950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACA</genome_strand>
        <mrna_strand>GGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298315" ref_strand="+" ref_description="SGN-E298315 [cLET-41-A16]">
      <seq>ctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcatcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaagctaattgttggataaatttatactctttttatcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="111715" stop="110651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111415" g_stop="111380" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111252" g_stop="110951" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="338" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E298315" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111415" e_stop="111380"/>
          <exon e_start="111252" e_stop="110951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCAC</genome_strand>
        <mrna_strand>CTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCATCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAAGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345976" ref_strand="+" ref_description="SGN-E345976 [cTOF-24-C21]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggttagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcactttttggtttcgaaaccaccttcatttttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaatttatactctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110958" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="741" r_length="299" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E345976" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGG-TAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGG-AAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCAC-TTTTGGTTTCGAAACCACCTTCA-TTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTA</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTTGGTTTCGAAACCACCTTCATTTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545734" ref_strand="+" ref_description="SGN-E545734 [TUS-68-L19]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110974" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="721" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="732"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E545734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAA</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282245" ref_strand="+" ref_description="SGN-E282245 [cLES-4-E6]">
      <seq>tactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatgcaggctaattgttggataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="112910" stop="110673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112610" g_stop="112520" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="221" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111252" g_stop="110974" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="500" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="512"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E282245" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112610" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAA</genome_strand>
        <mrna_strand>TACTGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339186" ref_strand="+" ref_description="SGN-E339186 [cTOF-6-L24]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaagggtgggttagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactcntgtagttgagcactttttggtttcgaaaccaccttcatttttgagtttgccagcttttcgagatagtttaagttctcttaaatttggtttatgcagggctaattgttgggataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="110673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110978" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="720" r_length="282" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="722" polyA_stop="738"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E339186" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGG-GTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGG-AAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTC-TGTAGTTGAGCAC-TTTTGGTTTCGAAACCACCTTCA-TTTTGAGTTTGCCAGCTTTTCGAGATAG-TTAAGTTCTCTTAAATTTGGTTTATGCA-GGCTAATTGTTGG</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAGGGTGGGTTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCNTGTAGTTGAGCACTTTTTGGTTTCGAAACCACCTTCATTTTTGAGTTTGCCAGCTTTTCGAGATAGTTTAAGTTCTCTTAAATTTGGTTTATGCAGGGCTAATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345234" ref_strand="+" ref_description="SGN-E345234 [cTOF-13-G16]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcactttttgtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110989" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="706" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E345234" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGG</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTTGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341266" ref_strand="+" ref_description="SGN-E341266 [cTOE-22-B1]">
      <seq>ttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113540" stop="110693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113240" g_stop="113196" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="91" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="177" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="307" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="110993" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="567" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E341266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113240" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATG</genome_strand>
        <mrna_strand>TTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348079" ref_strand="+" ref_description="SGN-E348079 [cTOF-31-N11]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcatttttgagtttgccagcttttcgagatagttaagttctcttaaatttggtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="110996" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="701" r_length="259" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="713"/>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E348079" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="110996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGG-AAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCA-TTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTT</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302620" ref_strand="+" ref_description="SGN-E302620 [cLEX-1-I13]">
      <seq>gagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatgtatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagctttttcgagatagttaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113788" stop="110711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113488" g_stop="113444" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="165" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="211" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="297" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111011" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="670" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E302620" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113488" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGC-TTTTCGAGATAGTTAAGTTC</genome_strand>
        <mrna_strand>GAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATGTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTTCGAGATAGTTAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346811" ref_strand="+" ref_description="SGN-E346811 [cTOF-32-M18]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttcgaaaccaccttcattttgagtttgccagcttttcgagataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111014" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="681" r_length="239" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E346811" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAG</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345236" ref_strand="+" ref_description="SGN-E345236 [cTOF-13-I10]">
      <seq>tgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcactttttggtttcgaaaccaccttcattttgagtttgccagcttttcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113792" stop="110723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113492" g_stop="113444" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="215" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="301" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111023" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="662" r_length="231" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E345236" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113492" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCAC-TTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAG</genome_strand>
        <mrna_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328300" ref_strand="+" ref_description="SGN-E328300 [cTOC-21-N16]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcacttttggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="110760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111060" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="631" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E328300" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTC</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340828" ref_strand="+" ref_description="SGN-E340828 [cTOF-5-J7]">
      <seq>tgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggttagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttgagcactttttggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113792" stop="110760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113492" g_stop="113444" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="215" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="301" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111060" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="626" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E340828" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113492" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGG-TAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCAC-TTTTGGTTTC</genome_strand>
        <mrna_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTTGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346699" ref_strand="+" ref_description="SGN-E346699 [cTOF-28-D15]">
      <seq>ggtttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattngttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactctgtagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113805" stop="110775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113505" g_stop="113444" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="182" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="228" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="444" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111075" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="623" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E346699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113505" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATT-GTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTG</genome_strand>
        <mrna_strand>GGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTNGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340321" ref_strand="+" ref_description="SGN-E340321 [cTOF-2-G10]">
      <seq>gtttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaantattgttgtcgaaaaatgcagctttcgatatctatttacattttgatttctgaacactctgtagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113804" stop="110775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113504" g_stop="113444" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="181" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="227" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="443" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111075" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="623" r_length="180" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E340321" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113504" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAA-TATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACA-TTTGATTTCTGAACACTCTGTAGTTG</genome_strand>
        <mrna_strand>GTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAANTATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTTGATTTCTGAACACTCTGTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325907" ref_strand="+" ref_description="SGN-E325907 [cTOC-12-A16]">
      <seq>tttcttcaagctgctgagtatctctgaattttggcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcacggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111082" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="613" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E325907" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCT</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTGGCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303491" ref_strand="+" ref_description="SGN-E303491 [cLEX-2-M10]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111082" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="613" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E303491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCT</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290481" ref_strand="+" ref_description="SGN-E290481 [cLES-20-P8]">
      <seq>tgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcaacatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttctgaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113779" stop="110785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113479" g_stop="113444" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="156" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="202" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="288" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="418" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111085" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="586" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E290481" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113479" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACAC</genome_strand>
        <mrna_strand>TGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAACATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326125" ref_strand="+" ref_description="SGN-E326125 [cTOC-16-H16]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="110792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111092" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="599" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E326125" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTC</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289564" ref_strand="+" ref_description="SGN-E289564 [cLET-3-J18]">
      <seq>aacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcagcatgttgcaaattggaggaaaatattgttgtcgaaaaatgcagctttcgatatctatttacatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113562" stop="110797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113262" g_stop="113196" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="113" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="199" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="329" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="111097" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="485" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E289564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113262" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTG</genome_strand>
        <mrna_strand>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282960" ref_strand="+" ref_description="SGN-E282960 [cLER-17-A14]">
      <seq>gaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttcttttttctgcagcatgttgcaaattggaggaaaatattgttgtctaaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113778" stop="110822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113478" g_stop="113444" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="155" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="201" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="287" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111122" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="548" r_length="131" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E282960" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113478" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGC</genome_strand>
        <mrna_strand>GAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTTTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCTAAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311983" ref_strand="+" ref_description="SGN-E311983 [cTOA-16-C5]">
      <seq>tgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggggcccagtccgcttcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtgggagaaggggaaggaggcttggaagactctttctcttttctgcagcatgttgcaaattggaggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113792" stop="110841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113492" g_stop="113444" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="215" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="301" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="432" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111141" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="544" r_length="112" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E311983" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113492" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGC-TCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAA</genome_strand>
        <mrna_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGGGCCCAGTCCGCTTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGGAGAAGGGGAAGGAGGCTTGGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347697" ref_strand="+" ref_description="SGN-E347697 [cTOF-26-G3]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagaaaaactatggttcgcattactggtggaatgaaagtgaaaggttacagagataaatcttctccgtatgctgctatgcttgcagctcaagatgtgtcacaccgatgcaagggacttggaattaatggtcttcacattaagctccgagctacaggaggcgacaagaccacgactcctggtcctggtgcccactccgctcttatagcattggctcgttctggcgtgaaaaatggacgcatagaggatgttactccaattaccaccgatagtactcgcagaaagagtggtataaggagaaggaggctgttaaaactatttctcttttttgcagcatgttgcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="0.907"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111150" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="545" r_length="103" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E347697" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATT</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAAAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAAGTGAAAGGTTACAGAGATAAATCTTCTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTGTCACACCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGAATTAATGGTCTTCACATTAAGCTCCGAGCTACAGGAGGCGACAAGACCACGACTCCTGGTCCTGGTGCCCACTCCGCTCTTATAGCATTGGCTCGTTCTGGCGTGAAAAATGGACGCATAG...............................................................................................................................AGGATGTTACTCCAATTACCACCGATAGTACTCGCAGAAAGAGTGGTATAAGGAGAAGGAGGCTGTTAAAACTATTTCTCTTTTTTGCAGCATGTTGCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325916" ref_strand="+" ref_description="SGN-E325916 [cTOC-12-E18]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaagctgtgaagactctttctcttttctgcagcatgttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111152" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="543" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E325916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAA</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAAGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304843" ref_strand="+" ref_description="SGN-E304843 [cLEX-10-N4]">
      <seq>ttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgggaaaactctttctcttttctgcagcatgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113802" stop="110853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113502" g_stop="113444" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="179" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="225" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="311" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111153" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="541" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E304843" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113502" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAA</genome_strand>
        <mrna_strand>TTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGGGAAAACTCTTTCTCTTTTCTGCAGCATGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E310002" ref_strand="+" ref_description="SGN-E310002 [cTOA-4-G11]">
      <seq>tgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcatgatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacatgaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggtggtagaaggggaaggaggctgtgaagactctttctcttttctgcatcatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113792" stop="110856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113492" g_stop="113444" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="215" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="301" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111156" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="528" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E310002" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113492" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTG</genome_strand>
        <mrna_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCATGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACATGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCATCATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293906" ref_strand="+" ref_description="SGN-E293906 [cLET-13-C2]">
      <seq>aacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggctcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctatggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactctcagaaagggtggtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113562" stop="110901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113262" g_stop="113196" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="113" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="199" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="329" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="111201" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="381" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E293906" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113262" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAG</genome_strand>
        <mrna_strand>AACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGCTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTATGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCTCAGAAAGGGTGGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315007" ref_strand="+" ref_description="SGN-E315007 [cTOB-4-C4]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaagatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcagaaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="110909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111209" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="486" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E315007" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGT</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341349" ref_strand="+" ref_description="SGN-E341349 [cTOE-22-N18]">
      <seq>acgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggagcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113561" stop="110916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113261" g_stop="113196" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="112" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="198" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="328" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111252" g_stop="111216" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="365" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E341349" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113261" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGCAG</genome_strand>
        <mrna_strand>ACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGAGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241611" ref_strand="+" ref_description="SGN-E241611 [cLED-36-O5]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="110918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111218" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="473" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E241611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGC</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284776" ref_strand="+" ref_description="SGN-E284776 [cLES-3-J15]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="110918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="176" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="222" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="308" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="438" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111218" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="473" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E284776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGC</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318951" ref_strand="+" ref_description="SGN-E318951 [cTOB-14-B15]">
      <seq>tgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaattcccaccgatagtactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113792" stop="110918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113492" g_stop="113444" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="169" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="215" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="301" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111218" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="466" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E318951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113492" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATTCCCACCGATAGTACTCGC</genome_strand>
        <mrna_strand>TGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATTCCCACCGATAGTACTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313842" ref_strand="+" ref_description="SGN-E313842 [cTOA-17-K22]">
      <seq>aattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgtatgcacacattttagcatcgttcaatgatacattcattcacgttactgatttgtctggaggagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgaatgctgctgagcttgcagctcaggatgtgtcacatcgatgcagggaactcggagttaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggacctggtgcccagaccgctctgagagctttggctcgttctggcatgaaaattggacgtatagaggatgttactccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113777" stop="111069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113477" g_stop="113444" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="155" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="201" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="287" r_length="86" r_score="0.942"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="417" r_length="130" r_score="0.962"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111236" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="434" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E313842" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113477" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGT-TGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAATT</genome_strand>
        <mrna_strand>AATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTATGCACACATTTTAGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAGGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGAATGCTGCTGAGCTTGCAGCTCAGGATGTGTCACATCGATGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGGAGTTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGACCTGGTGCCCAGACCGCTCTGAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312789" ref_strand="+" ref_description="SGN-E312789 [cTOA-8-H24]">
      <seq>tttcttcaagctgctgagtatctctgaattggctcactgtgaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcatgatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccggtcttagagctttggctcgtttctggcatgaaaattggacgtatagaggatgttactccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="111069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="180" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="226" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="312" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="443" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111237" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="459" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E312789" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCG-TTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTACTCCAAT</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTGGCTCACTGTGAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCATGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGGTCTTAGAGCTTTGGCTCGTTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTACTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336882" ref_strand="+" ref_description="SGN-E336882 [cTOE-5-D1]">
      <seq>ttcaagctgctgagtatctctgaattttgtcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccaccagtaaagcgatgtgcattctacatctgagtttcagacattactgcatcggcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="111072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="175" r_length="119" r_score="0.817"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.74"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="221" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="307" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="437" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111243" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="447" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E336882" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTAC</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTGTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCACCAGTAAAGCGATGTGCATTCTACATCTGAGTTTCAGACATTACTGCATCG-GCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E296899" ref_strand="+" ref_description="SGN-E296899 [cLET-26-K23]">
      <seq>tcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaagatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgtatagaggatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113798" stop="111072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113498" g_stop="113444" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="175" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="221" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="307" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111380" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="437" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="111252" g_stop="111243" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="447" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E296899" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113498" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111380"/>
          <exon e_start="111252" e_stop="111243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAGGTACATAAGCTTTTCTCTCTTGCATCAGTATCGTATCATGGCAAAGTTCTCGTAATATGCTCCATATAATCTGTTGTATCATTGTTATGTCATCACTTTTAAGTAATTCTTCCTATATATTTTGCAGAGGATGTTAC</genome_strand>
        <mrna_strand>TCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAAGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG...............................................................................................................................AGGATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338890" ref_strand="+" ref_description="SGN-E338890 [cTOE-21-B11]">
      <seq>cgagggtttctttaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtacgctcttagagctttggctcgttctggcatgaaaattggacgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113807" stop="111081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113509" g_stop="113444" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="186" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="232" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="318" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111381" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="447" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E338890" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113509" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATA</genome_strand>
        <mrna_strand>CGAGGGTTTCTTTAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTACGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312500" ref_strand="+" ref_description="SGN-E312500 [cLEZ-20-J7]">
      <seq>cttcaagctggtgagtatctctgaatttggtgactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactagtgcacttggaccagcaactatggaaggtgaattggtgttcggagttgcacacatttttgcataggtcaatgatacattcattcacgttactgatttggctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgcatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccagtccgctcttagagctttggctcgttctggcatgaaaattggacgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113800" stop="111083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113500" g_stop="113444" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="177" r_length="120" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="223" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="309" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111383" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="436" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E312500" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113500" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTA</genome_strand>
        <mrna_strand>CTTCAAGCTGGTGAGTATCTCTGAATTTGGTGACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTAGTGCACTTGGACCAGCAACTATGGAAGGTGAATTGGTGTTCGGAGTTGCACACATTTTTGCATAGGTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGGCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGCATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307165" ref_strand="+" ref_description="SGN-E307165 [cLEY-15-E22]">
      <seq>atctctgaatttgctcactatcaagggcaactgtagccatgtcaaggagaaagaccagagagcctaaggaagagactgtcacacttggaccagcaacaagggaaggtgaattggtgttcggtgttgcacacatttttgcatccttcaatgatacattcattcacgttactgattagtctggaagagaaactatggttcgcattactggtggaatgaaagtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacaggaggcaacaagaccaagactcctggtcctggtgcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113616" stop="111128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113484" g_stop="113444" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="161" r_length="120" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="207" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="293" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111428" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="375" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E307165" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113484" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGT</genome_strand>
        <mrna_strand>ATCTCTGAATTTGCTCACTATCAAGGGCAACTGTAGCCATG................................................................................................................................TCAAGGAGAAAGACCAGAGAGCCTAAGGAAGAGACTGTCACACTTGGACCAGCAACAAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCCTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTAGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAAGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336598" ref_strand="+" ref_description="SGN-E336598 [cTOE-4-K22]">
      <seq>tttcttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactntacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagctacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113803" stop="111166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113503" g_stop="113444" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="179" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="225" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="311" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111466" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="355" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E336598" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113503" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGG</genome_strand>
        <mrna_strand>TTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACT-NTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327157" ref_strand="+" ref_description="SGN-E327157 [cTOC-18-D5]">
      <seq>ctcgtgccgcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaagggacttggaattaatgctcttcacattaagctccgagctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113802" stop="111168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113506" g_stop="113444" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="183" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="229" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="315" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111468" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="357" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E327157" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113506" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACA</genome_strand>
        <mrna_strand>CTCGTGCCGCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E289778" ref_strand="+" ref_description="SGN-E289778 [cLET-9-C12]">
      <seq>ctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcaggatgtgtcacagcgatgcaaggaacttggaattaatgctcttcacattaagctccgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113793" stop="111170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113493" g_stop="113444" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="170" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="216" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="302" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111470" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="342" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E289778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113493" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTA</genome_strand>
        <mrna_strand>CTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279237" ref_strand="-" ref_description="SGN-E279237 [cLEL-4-M3](-)">
      <seq>gcacgaggctgagtatctctgatttttctcactatcaagctcagctggagccatgtcgaggagaaagaccccgcagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtctggaagagaaactatggttcgcattactggtggaatgaaggtgaaggctgacagagatgagtcttctccgtatgctgctatgcttgcagctcatgatgtgtcacagcgatgcaaggaacttggaattaatgctcttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113797" stop="111184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113498" g_stop="113444" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="175" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113051" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="221" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112605" g_stop="112520" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="307" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111509" g_stop="111484" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="333" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E279237" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279237" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113498" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113051"/>
          <exon e_start="112605" e_stop="112520"/>
          <exon e_start="111509" e_stop="111484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTGGTATGCCTTATAGAAACAATTGTTTTATACTTTTGACTGTATCCTTGTAGTTACTGATTAGCTGGTAGCAGTATAATTGTTGCTTTCGATGCGAACATCGGTTTATGTATAAATGTAGATGCCTTTCTTCCAGGATGCTAATTCTGTTGTTGTTATCCCTATTGGATAGACATATATTTACTTTTTCAATATAGATGAATGTAAGTGGTAGGAAATGTAGAGCATCTATAGTTTTAGGGAAATCAAGAATGTAGAGCATCTATAGTTTTAGGGAATCCTTGATATGGTTGAGGCAGCAAATTATTGGTATTAGAATATAATCCTTCTAGGAAGAAGGAAAATGGGTATAGAGGTTCCGTCTAGTGTGGAGTTTAATCTTAGTTGTTGATGTCGTAATGGTATGGAGAAGCCTTTCATCTCAAATTGTTATACATTTTTGTTGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAGGTAGTGTCTTGTTTGGTTCTGATAAAGTCAATTTCCTTAATTCTACTTAATTGTTAGTTAAGCTCATCAGATATAAAGTTGGTCTAGTTCAGGTCTATATCAATATAAACCATTTATGTATGAACGAAAAAAATGAAGACTTTTTGCCTATATGGTACTGTTCACAGAGATTAATATTAGATTTTATTTCTGAAGAAAGTCACTATACTAATTTCACTGGATATTGATGTAATGTTTAGTTCTCCTGGATGTTGCATTCCATGTTGGTGCAGGGATTTATCCTTTCTTGCATTGACCAGTAATATAGGTGCCAAATTACATAGCTCTTCTATAAGTGTAGAGTGTTGCTTTGTAGATAAAATTTAGCAGTTTCGAAATTTAAGACCTTTTGGATCTTCTGATGCCTCCCTTTTCTGAATGTGTGCTAAAGCCAATAATTCTGCCGACTAGACATTCGAAGATCTTATAATGTACATGATGGCCTTTACTCCTATCTATGTTTCTTGCTAGGATGTAGATGGTCTATAAGATTGTTTTTGGGTTCCATATGCCTGATGCATCTTACTTTTGCTTAACAATAAAAAATTTGTGTATAATTGATTGGAATAAATGCCATTCCTTCGAACATATTGTAGAGACCCGTAGATTTTATGTCACCGGTTTGGATCTATTAGGCTTTGTTATGGAAGATTCCATTCTGAAGTGATGTGTGCACCTTCAATTTTCGGACACTTTTACCACTAACAGTTGCATAATCGCTGGTGGTGCTTGAACTATGGAAAAATGTGTGCTTCAGATTCTATTTAAGCGTCAAGGTTTCGGAATGGTGGTCAGAATCATTGTTAATGGGTTCCATGCTATGCCATTTATTCAGAGTCTAAATATAGCTACACTATATTTAAGACTCAAGCTCGGATACGTCCATCTTTATCCATCTAGTCTGATGTCACTAGGTCTCGTCATCACTTGTTAATCTTTTAAAATATTATTTATGAACTTTTGATTTACAGGAACTTGGAATTAATGCTCTTCACAT</genome_strand>
        <mrna_strand>GCACGAGGCTGAGTATCTCTGATTTTTCTCACTATCAAGCTCAGCTGGAGCCATG................................................................................................................................TCGAGGAGAAAGACCCCGCAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCATGATGTGTCACAGCGATGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTGGAATTAATGCTCTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337832" ref_strand="+" ref_description="SGN-E337832 [cTOE-14-A13]">
      <seq>tttgattaatttgaattgaaaaactgtatgttcgatgaaattgtttgtttgtagtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccatcaacgacggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgatacattcattcacgttactgatttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113669" stop="112896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113369" g_stop="113196" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113096" g_stop="113080" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="191" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E337832" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113369" e_stop="113196"/>
          <exon e_start="113096" e_stop="113080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAGCACGTTACTGATTTGTC</genome_strand>
        <mrna_strand>TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCATCAACGACGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT...................................................................................................CACGTTACTGATTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327322" ref_strand="+" ref_description="SGN-E327322 [cTOC-19-F4]">
      <seq>ttcaagctgctgagtatctctgaattttctcactatcaagctcagctgaagccatgtcgaggagaaagaccagggagcctaaggaagagactgttacacttggaccagcaacgagggaaggtgaattggtgttcggtgttgcacacatttttgcatcgttcaatgataactttcatttcacgttactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="113799" stop="112883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113499" g_stop="113444" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113315" g_stop="113196" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="177" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99">
            <donor d_prob="0.008" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113096" g_stop="113083" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="192" r_length="15" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E327322" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>190</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113499" e_stop="113444"/>
          <exon e_start="113315" e_stop="113196"/>
          <exon e_start="113096" e_stop="113083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATGGTACTATTTCTCGTGCTGAAATTTCCATTTCATTACTGAAGATTTGCTGTTTATGTCGATTATATTTAGTTTGATTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGAT-ACATTCATTGTGAGTGAGTTATGGTTTTTGAAAATTTGATGTAGAAATGTAGATTTGGCTTTGTTATTTGTGTGTTTTACTGATTCTTAGTGTATGTGATGAATGCAG-CACGTTACTGATTT</genome_strand>
        <mrna_strand>TTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG................................................................................................................................TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATAACTTTCATT...................................................................................................TCACGTTACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238878" ref_strand="+" ref_description="SGN-E238878 [cLEL-9-J22](-)">
      <seq>agtggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactgaaccaatttcagtgaatggttcttatcaatcgttgcgtgcaccaactcttaaaagatgtgcgaattgctccgggactggaaaggtaatgtgccctacatgtctgtgtactgggatggtgatggcaagtgaacatgaccttcgaatagatccatttgattaagtacaaattctcattttgtaacttatattcatacaaaaaataattggtcattttggttttgttataagcatagttattatatatagaatatcctttggttatgaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="116268" stop="1843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115968" g_stop="115880" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115879" i_stop="115736" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115735" g_stop="115602" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="222" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115601" i_stop="115188" i_length="414">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115187" g_stop="115004" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="406" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115003" i_stop="114407" i_length="597">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="114406" g_stop="114390" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="423" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E238878" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115968" e_stop="115880"/>
          <exon e_start="115735" e_stop="115602"/>
          <exon e_start="115187" e_stop="115004"/>
          <exon e_start="114406" e_stop="114390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCGAAGAATAAAACAGTCATATTCGTCCACATTACATGGCCAAAATGAGGCCTTCCCTTGTAGTTAGAATAACATCCTCAACAACAACAAGGTTCGTTGAACCCCTTCTTCCTATCCTTGCTCGTTGCTACCTACGAAATGAGTTCCTCTAAGAAGATGCATGTCACAAATACGCGCATGCATCTCTCATCACATGTTACGATAACTTTCCCTTATCGTATACGTATATATGCTAATGTTTTTTGTTTCATATTATGATATTTTTTGGCTAGGTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACTCCTCATCTATTTAACAATGAAGGTGTTAGAAATTTCGTTAAGCGTATGTGTTCAAGATTTGATATAAATGTATGAAACAGAATTTTCGACCTATATACTGAATACCATTTTTATATATGTGGTATATGACGAAAGAGTGTCTGATTCGCCACCTCATCTTTTTATGAGTAACTAATAATAACACCAATTATGCATTTCGAAAGTTAGGCTATATGAATTTTTACTTCTTTGTTTAATCTTAATTCATGTTAATGTAATTGTTGGATAATTATAATTATAAATAATAAATTATTCAAATTAATACATATCTGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTCAAATCCCACAGCTGTCAATAATTTTTTTCGATTTTTAAAAAACTTAATTTCTAATCTTGTTTTTCTTCTATACTATAACAGTATAACTAGTTTTTTATTTGTCTAAGTTTTGATAAATAATATAATTTGATATTTATATTGATAAGAAATAGTAAATATATCACAAAATTAATTGAAATATACATAAACTTATTTGAACACTGTAAAAATTTTAGGTGAAAAAAGAAAGTAA</genome_strand>
        <mrna_strand>AGTG-GAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239377" ref_strand="+" ref_description="SGN-E239377 [cLEL-9-J22](-)">
      <seq>gcctctatactgaaccaatttcagtgaatggttcttatcaatagttgcgtgcaccaactcttaaaaaatgtgcaaattgccccgggactggaaaggtaatgtgccctacatgtctgtgtactgggatggtgatggccagtgaacatgaccttcgaatagatccatttgattaagtacaaattctcattttgtaacttatattcatacaaaaaataattggtcattttggctttgttataagcatagttattatatatagaatatcctttggttatcaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="115996" stop="1843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115696" g_stop="115602" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115601" i_stop="115188" i_length="414">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115187" g_stop="115004" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="279" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115003" i_stop="114407" i_length="597">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="114406" g_stop="114390" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="296" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E239377" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115696" e_stop="115602"/>
          <exon e_start="115187" e_stop="115004"/>
          <exon e_start="114406" e_stop="114390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCGAAGAATAAAACAGTCATATTCGTCCACATTACATGGCCAAAATGAGGCCTTCCCTTGTAGTTAGAATAACATCCTCAACAACAACAAGGTTCGTTGAACCCCTTCTTCCTATCCTTGCTCGTTGCTACCTACGAAATGAGTTCCTCTAAGAAGATGCATGTCACAAATACGCGCATGCATCTCTCATCACATGTTACGATAACTTTCCCTTATCGTATACGTATATATGCTAATGTTTTTTGTTTCATATTATGATATTTTTTGGCTAGGTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAGATGATAACTCCTCATCTATTTAACAATGAAGGTGTTAGAAATTTCGTTAAGCGTATGTGTTCAAGATTTGATATAAATGTATGAAACAGAATTTTCGACCTATATACTGAATACCATTTTTATATATGTGGTATATGACGAAAGAGTGTCTGATTCGCCACCTCATCTTTTTATGAGTAACTAATAATAACACCAATTATGCATTTCGAAAGTTAGGCTATATGAATTTTTACTTCTTTGTTTAATCTTAATTCATGTTAATGTAATTGTTGGATAATTATAATTATAAATAATAAATTATTCAAATTAATACATATCTGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAAAGGGCGTGGGTTCAAATCCCACAGCTGTCAATAATTTTTTTCGATTTTTAAAAAACTTAATTTCTAATCTTGTTTTTCTTCTATACTATAACAGTATAACTAGTTTTTTATTTGTCTAAGTTTTGATAAATAATATAATTTGATATTTATATTGATAAGAAATAGTAAATATATCACAAAATTAATTGAAATATACATAAACTTATTTGAACACTGTAAAAATTTTAGGTGAAAAAAGAAAGTAA</genome_strand>
        <mrna_strand>GCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATAGTTGCGTGCACCAACTCTTAAAAAATGTGCAAATTGCCCCGGGACTGGAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCCAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGCTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270644" ref_strand="+" ref_description="SGN-E270644 [cLEM-6-K7]">
      <seq>tttcttcctaacatgactccaaagacactaaagcagctttatcttacaagcttttcatttatagctgggattatggtcttcggtggattacttgccccagtacttgagctgaaattaggtctaggaggcacctcatacgaagattttatacgtaacatgcatttgcctatgcaattgagccaggtcgaccccatagtggcgtccttttcaggcggggcagtgggagtcatctcagccctcatgctaatagaagctaacaatgtagtccaacaagagaagaaaaagtgcaaatattgctatggaagtgggtacttggcatgtgcacgatgttcagcaagcggtaaatgcctctatactgaaccaatttcagtgaatggttcttatcaatcgttgcgtgcaccaactcttaaaagatgtgcgaattgctccgggactggaaaggtatgaaacatgatcatctccctacttcatgcactcaacagtcatattatatcagttcaataagtagtaactttacaagaaaaaacaaatatctgtgtctgttacaatccgtcccatagtcgagcatctcaaaaatgtgtgaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0168F14-7Auxd/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C09HBa0168F14.3" temp_strand="-" temp_description="C09HBa0168F14.3  EF647606.2 htgs_phase:3 submitted_to_sgn_as:gb|EF647606| upload_account_name:spain (1 - 116478)">
        <position start="116478" stop="115157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116478" g_stop="116430" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="102" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116429" i_stop="116295" i_length="135">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116294" g_stop="116218" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="179" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116217" i_stop="116008" i_length="210">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.477" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116007" g_stop="115880" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="307" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115879" i_stop="115736" i_length="144">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115735" g_stop="115457" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="586" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0168F14.3" gen_strand="-" ref_id="SGN-E270644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0168F14.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116478" e_stop="116430"/>
          <exon e_start="116294" e_stop="116218"/>
          <exon e_start="116007" e_stop="115880"/>
          <exon e_start="115735" e_stop="115457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTAGTAAGCTCATGAACTCAATTATTTCCTTATCCTTATTCTGGTTCTGCATTATGCATAACGGTACTATGGAGTTATTTATTTCCCTATTCTTGAATGATGAAGTCTTTCGACTATTGTAACTCTTTGATATTGCAGCTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAGGTATGTAAACTGTAACCTGAAGTCCTGAACTACATTTTCATGTGTAGAAAAGGTCGGTGAATTGTTCCTCACAAACATCATTAAATTGTGCACATTTGTTCACTGCATTGTTCTTTACCTTCCCAAAAAAGGAGCGTCACAAAATAGAAACAGAAGACCACTTACGTCCTCGTGAATTTGGGTACCGACTTCTTTTTCTCTTCTTCTCAGCCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTGGTATGTTCATGTGAAACTTATTACATATCATTGCACAATGTCTACACTATTGAACTCTCGACCAATAGTCAGTGTCTTTTTTTGATTATTTGAGTTCATGGTACTGACCATAATCTCATTTCATGGTCATTTGATTTGGTGTAGGGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG</genome_strand>
        <mrna_strand>TTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA.......................................................................................................................................CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG..................................................................................................................................................................................................................CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG................................................................................................................................................GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>356</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6602" PGL_stop="4882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6602" e_stop="6341"/>
            <exon e_start="5245" e_stop="4882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6602" e_stop="6341" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6340" i_stop="5246" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5245" e_stop="4882" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6602" stop="6341"/>
              <exon start="5245" stop="4970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6600" stop="6341"/>
              <exon start="5245" stop="4934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6598" stop="6341"/>
              <exon start="5245" stop="4882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6598" stop="6341"/>
              <exon start="5245" stop="4885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6590" stop="6341"/>
              <exon start="5245" stop="4919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6589" stop="6341"/>
              <exon start="5245" stop="4984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGTAGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGGAAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAACTTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGACCAATTTTGGTGATACATTTG : ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGGTGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTATTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAAACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAGATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGGTTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTTGTAAGTATGAACTATGTCTAGTTC</gDNA_template>
            <first_frame> V  D  M  D  M  S  N  P  A  V  F  V  N  A  E  F  L  K  E  H  V  G  R  K  V  R  T  V  V  Q  V  M  Q  S  D  G  D  K  V  I  G  K  S  T  D  E  K  E  L  V  V  K  G  N  P  P  N  A  L  S  T  F  V  E  V  I  G  I  A  D  T  I  Q  S  I  E  A  E  I  W  T  N  F  G  D  T  F   : D  V  N  S  Y  D  K  V  C  R  L  A  N  G  D  S  K  H  L  F  I  *  E  M  I  Y  K  R  G  H  I  S  S  Y  F  C  C  I  V  P  E  F  Q  C  I  I  S  S  L  K  Y  S  *  K  L  W  I  F  S  F  Y  L  G  F  H  Q  Q  K  L  S  S  V  L  R  C  K  L  V  F  L  Q  L  M  L  F  G  I  L  N  T  N  I  C  G  S  T  S  *  S  T  W  H  *  T  S  C  V  T  Y  I  S  C  N  L  *  V  *  T  M  S  S   </first_frame>
            <second_frame>  *  T  W  T  C  Q  I  L  P  S  L  S  M  L  S  S  S  R  S  M  *  D  G  R  F  E  Q  W  F  R  L  C  N  L  M  V  I  K  S  L  E  N  P  R  M  K  K  N  *  L  *  K  E  I  H  L  M  L  F  Q  L  L  L  K  *  L  V  *  L  T  L  S  S  L  L  K  Q  K  F  G  P  I  L  V  I  H  L  :  M  L  I  A  M  T  R  C  A  D  *  Q  M  V  T  V  S  T  C  L  S  E  K  *  F  I  K  E  D  I  Y  P  L  I  S  A  A  L  F  Q  S  F  N  V  L  *  V  V  *  S  T  P  E  N  F  G  F  S  A  S  I  *  G  F  I  N  R  S  *  A  L  C  L  D  V  N  L  F  F  F  N  L  C  Y  L  V  F  *  T  L  I  F  V  V  P  L  V  S  Q  L  G  I  K  L  A  V  L  H  T  *  V  V  T  C  K  Y  E  L  C  L  V  </second_frame>
            <third_frame>   R  H  G  H  V  K  S  C  R  L  C  Q  C  *  V  P  Q  G  A  C  R  T  E  G  S  N  S  G  S  G  Y  A  I  *  W  *  *  S  H  W  K  I  H  G  *  K  R  I  S  C  E  R  K  S  T  *  C  S  F  N  F  C  *  S  N  W  Y  S  *  H  Y  P  V  Y  *  S  R  N  L  D  Q  F  W  *  Y  I  * :   C  *  *  L  *  Q  G  V  Q  T  S  K  W  *  Q  *  A  L  V  Y  L  R  N  D  L  *  K  R  T  Y  I  L  L  F  L  L  H  C  S  R  V  S  M  Y  Y  K  *  F  E  V  L  L  K  T  L  D  F  Q  L  L  F  R  V  S  S  T  E  V  K  L  C  A  *  M  *  T  C  F  S  S  T  Y  A  I  W  Y  F  E  H  *  Y  L  W  F  H  *  L  V  N  L  A  L  N  *  L  C  Y  I  H  K  L  *  L  V  S  M  N  Y  V  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6602" stop="6341"/>
                    <exon start="5245" stop="5181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDMDMSNPAVFVNAEFLKEHVGRKVRTVVQVMQSDGDKVIGKSTDEKELVVKGNPPNALSTFVEVIGIADTIQSIEAEIWTNFGDTFDVNSYDKVCRLANGDSKHLFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7536" PGL_stop="6763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7536" e_stop="6763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7536" e_stop="6763" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7536" stop="6763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7535" stop="6947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325549" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTTTGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATAGTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTTGGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAATGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAAAAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAATGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTAGAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTGTTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAACTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCAAGAGCTTGTGAAAGTGTATAAGGTTTACTATTTGTTTACTAGAGCTCTTGAACCAGAAGCTTAATATTGGAAAGAGATGGAAAGGTTTTTAAGCATTTATGAGTTCTGAATTTGATTTTCTTCATTGGTACAGCTAGTCGTTGAAATGCTTGTAGATGTGATATATCACTCAAAATCCTAAATT</gDNA_template>
            <first_frame> S  L  C  V  Y  W  F  *  F  *  T  L  Q  F  C  F  N  N  E  F  L  F  P  G  V  Y  P  *  F  S  V  *  R  F  P  *  F  T  F  N  S  V  S  S  C  Y  T  K  L  *  *  I  D  L  F  F  F  L  M  I  W  V  V  T  L  C  S  F  V  *  L  V  L  Y  F  L  *  L  W  V  M  K  N  Q  G  S  W  K  C  F  A  I  F  F  K  K  K  I  L  E  K  N  A  V  N  G  K  L  *  F  P  N  D  I  Y  V  I  L  *  T  M  E  S  I  E  V  M  V  *  C  K  I  *  C  *  K  F  *  R  V  R  I  V  *  S  C  L  V  D  A  Y  C  A  C  S  M  M  D  V  I  V  F  I  *  A  T  V  N  S  I  V  V  F  *  F  S  M  V  *  E  T  L  T  H  R  L  L  I  C  C  L  L  K  F  *  L  Q  E  L  V  K  V  Y  K  V  Y  Y  L  F  T  R  A  L  E  P  E  A  *  Y  W  K  E  M  E  R  F  L  S  I  Y  E  F  *  I  *  F  S  S  L  V  Q  L  V  V  E  M  L  V  D  V  I  Y  H  S  K  S  *  I </first_frame>
            <second_frame>  V  C  V  F  T  G  F  D  F  E  P  F  S  F  V  L  I  M  S  F  C  F  P  V  S  T  H  N  F  L  C  R  D  F  P  D  L  H  L  I  V  Y  Q  V  A  T  Q  N  C  D  K  *  I  F  S  F  F  *  *  F  G  L  L  H  F  V  H  L  C  N  W  F  C  T  F  C  N  Y  G  *  *  K  I  K  V  L  G  S  V  L  Q  F  F  L  K  K  K  S  L  K  K  M  Q  S  M  V  N  Y  D  S  Q  M  I  S  M  S  F  F  E  Q  W  N  L  L  R  *  W  F  D  V  K  Y  D  V  R  S  F  S  G  L  E  L  F  N  L  V  *  *  M  R  T  V  H  V  R  *  W  M  *  L  F  L  Y  K  Q  L  L  I  V  L  S  Y  S  D  F  R  W  C  K  K  L  *  L  T  G  F  *  F  V  V  F  *  S  F  N  C  K  S  L  *  K  C  I  R  F  T  I  C  L  L  E  L  L  N  Q  K  L  N  I  G  K  R  W  K  G  F  *  A  F  M  S  S  E  F  D  F  L  H  W  Y  S  *  S  L  K  C  L  *  M  *  Y  I  T  Q  N  P  K   </second_frame>
            <third_frame>   F  V  C  L  L  V  L  I  L  N  P  S  V  L  F  *  *  *  V  F  V  S  R  C  L  P  I  I  F  C  V  E  I  S  L  I  Y  I  *  *  C  I  K  L  L  H  K  I  V  I  N  R  S  F  L  F  F  N  D  L  G  C  Y  T  L  F  I  C  V  I  G  F  V  L  S  V  I  M  G  N  E  K  S  R  F  L  E  V  F  C  N  F  F  *  K  K  N  P  *  K  K  C  S  Q  W  *  I  M  I  P  K  *  Y  L  C  H  S  L  N  N  G  I  Y  *  G  N  G  L  M  *  N  M  M  L  E  V  L  A  G  *  N  C  L  I  L  F  S  R  C  V  L  C  M  F  D  D  G  C  D  C  F  Y  I  S  N  C  *  *  Y  C  R  I  L  I  F  D  G  V  R  N  F  N  S  Q  A  S  D  L  L  S  F  K  V  L  I  A  R  A  C  E  S  V  *  G  L  L  F  V  Y  *  S  S  *  T  R  S  L  I  L  E  R  D  G  K  V  F  K  H  L  *  V  L  N  L  I  F  F  I  G  T  A  S  R  *  N  A  C  R  C  D  I  S  L  K  I  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17642" PGL_stop="17933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17642" e_stop="17933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="17642" e_stop="17933" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17642" stop="17933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17643" stop="17817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATATAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  I  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  R  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  R  N  C  R  N  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  T  W  A  L  V  L  A  W  M  M  A  K  Q  Y  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  D  Y  V  R  A  K  G  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  Y  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  W  H  G  *  W  Q  N  S  T  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  I  T  C  G  L  K  A  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  P  K  L  P  K  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21155" PGL_stop="18927"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21155" e_stop="18927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="21155" e_stop="18927" e_length="2229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21155" stop="18927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20904" stop="20378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20902" stop="20404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20196" stop="19727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20174" stop="19823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19968" stop="19366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19171" stop="18930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGATTACTGATTAGCCTTTTAGAAGATCGGAAAACCCTAAAAATGGCTGATCGAGCTCTCTGTTCACTCTCATTTGACTGATAAATCTGCGGATGCGAGGTAATCTCACTATATATTTGTAATCAGTACTGTTTTCTGCTTTTAAATCCTTCAAAAAATGGATGATTTGATGCAAAAATCACTGAAAACCCCCGATTTTTTAGCTGTATTTACTAACAGTACAAGTGAAGGAATTGATAGAATTAGCTATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTCAGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATTTTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTGAGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTTGTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTGTTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTGAGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATGGGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTGAAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCAAGACTAGAGAAACTGGTATTGGATGGTTGTACTTTTGGAACTATGACTATGCTTGATATTGTTTCAACGTCTCTGGTTTATGTGTCTCTACTGAACTATGTCAATAACGTAGAAGCTTACAACAATTGTATCGTCAAGATTTCTTGCCCGAATCTCAAGGTCTTGAAATATGGTGCTCCATTGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTTTTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATGTCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTATTTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAGTGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATTTAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCCATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTGGTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAGTATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAGAGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCAAACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAGACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGACATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCATGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTTCAAAGAGCACTGGACAGACTTCAATGAAGCATATTTGACTCCGGACAAAGAAGCATTCAACTTGTCGACAGATGTTACATGCGTATACAAGATTTAGGAAGTATCAGTCATCTCTTTCTGCACTATATGGTTGTTGTTGACCTCTGAAACGTGTTTTATTATGTTTTCGGACTCGCGTAGGTCATGCCATACACAGTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATTGATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGTGTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAACTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAATGGATACT</gDNA_template>
            <first_frame> *  *  L  L  I  S  L  L  E  D  R  K  T  L  K  M  A  D  R  A  L  C  S  L  S  F  D  *  *  I  C  G  C  E  V  I  S  L  Y  I  C  N  Q  Y  C  F  L  L  L  N  P  S  K  N  G  *  F  D  A  K  I  T  E  N  P  R  F  F  S  C  I  Y  *  Q  Y  K  *  R  N  *  *  N  *  L  F  A  G  *  Y  T  A  Q  Y  T  F  I  S  V  H  L  *  C  C  S  A  K  H  F  I  E  K  M  E  L  Y  M  E  D  N  A  L  L  E  F  *  Y  *  *  L  W  L  *  K  D  *  *  A  L  G  Y  G  Y  G  *  E  I  Q  R  F  Y  Q  L  G  V  D  *  P  M  W  G  *  P  C  L  F  *  A  L  L  W  G  Y  F  W  *  K  G  Y  F  S  M  G  S  C  C  D  S  S  K  C  S  R  T  R  V  R  F  L  S  C  *  A  I  *  V  A  I  L  C  C  D  L  *  I  L  A  S  F  E  I  T  A  *  W  V  C  T  *  V  V  *  S  F  W  I  S  S  A  *  I  S  S  S  *  K  S  *  V  I  K  R  A  F  D  E  L  L  V  L  K  T  R  E  T  G  I  G  W  L  Y  F  W  N  Y  D  Y  A  *  Y  C  F  N  V  S  G  L  C  V  S  T  E  L  C  Q  *  R  R  S  L  Q  Q  L  Y  R  Q  D  F  L  P  E  S  Q  G  L  E  I  W  C  S  I  G  K  G  Y  D  H  R  E  S  L  V  Y  R  S  C  S  H  L  I  F  L  F  R  R  C  N  K  R  N  W  N  A  F  A  *  G  V  Q  E  C  R  F  Y  I  S  F  E  I  M  Q  R  F  C  C  W  F  V  *  C  I  S  W  S  K  K  L  P  G  H  V  L  *  A  Q  V  L  K  I  G  S  G  N  *  R  I  L  H  G  N  H  D  A  I  A  Q  A  F  S  *  F  R  G  S  *  F  V  F  *  *  E  L  R  L  G  *  K  L  E  V  P  *  S  *  *  K  R  F  V  P  G  V  S  S  K  V  D  S  V  G  W  F  Q  K  *  R  *  R  D  R  A  T  E  V  F  P  Q  E  C  T  S  I  R  R  T  D  N  C  L  G  *  L  *  W  H  I  R  R  G  N  R  G  G  F  Q  L  S  *  S  F  F  T  C  C  C  L  I  S  *  F  Q  T  Q  I  K  I  S  L  P  G  Q  F  S  L  K  E  V  L  I  V  R  R  Y  V  A  W  T  W  T  L  Q  K  C  C  T  T  F  G  R  S  D  I  H  L  K  C  P  S  N  I  G  *  K  Y  P  F  W  E  L  V  H  E  Q  A  H  E  A  L  T  N  F  Y  Y  C  F  A  F  S  K  S  T  G  Q  T  S  M  K  H  I  *  L  R  T  K  K  H  S  T  C  R  Q  M  L  H  A  Y  T  R  F  R  K  Y  Q  S  S  L  S  A  L  Y  G  C  C  *  P  L  K  R  V  L  L  C  F  R  T  R  V  G  H  A  I  H  S  *  R  C  I  *  M  L  *  S  *  R  R  S  G  C  P  C  K  Y  *  C  F  W  C  I  S  T  P  N  Y  S  S  Q  L  *  A  R  C  L  C  N  L  F  R  L  M  N  N  L  S  H  V  N  Y  L  I  S  F  V  T  F  A  S  S  *  C  F  S  Q  *  N  L  L  I  S  S  K  R  M  D  T </first_frame>
            <second_frame>  N  D  Y  *  L  A  F  *  K  I  G  K  P  *  K  W  L  I  E  L  S  V  H  S  H  L  T  D  K  S  A  D  A  R  *  S  H  Y  I  F  V  I  S  T  V  F  C  F  *  I  L  Q  K  M  D  D  L  M  Q  K  S  L  K  T  P  D  F  L  A  V  F  T  N  S  T  S  E  G  I  D  R  I  S  Y  L  P  D  D  I  L  H  N  I  L  S  Y  L  Y  I  F  D  V  V  Q  L  S  I  L  S  K  R  W  N  Y  I  W  R  T  M  P  Y  L  N  F  D  I  N  S  F  G  C  E  R  I  D  R  L  W  D  M  G  M  A  E  K  F  K  D  F  I  N  W  V  L  I  N  R  C  G  D  S  L  V  C  F  K  L  C  C  G  D  I  F  G  K  R  A  I  F  R  W  V  R  V  V  T  A  R  N  V  Q  E  L  V  L  D  F  C  P  A  E  P  F  E  L  P  Y  C  V  V  T  C  E  S  L  R  V  L  K  L  R  L  D  G  S  V  L  K  L  S  N  H  F  G  F  H  Q  L  K  F  L  H  L  E  K  V  E  L  S  N  E  H  L  T  S  C  L  F  S  R  L  E  K  L  V  L  D  G  C  T  F  G  T  M  T  M  L  D  I  V  S  T  S  L  V  Y  V  S  L  L  N  Y  V  N  N  V  E  A  Y  N  N  C  I  V  K  I  S  C  P  N  L  K  V  L  K  Y  G  A  P  L  A  K  D  M  I  I  E  N  L  L  S  I  E  V  V  H  I  L  F  F  Y  S  D  D  V  I  K  E  I  G  M  R  L  H  K  V  F  K  N  V  A  S  T  S  A  L  K  L  C  K  G  S  V  V  G  L  Y  S  V  F  H  G  V  R  N  F  P  V  T  F  Y  K  L  K  S  L  K  L  A  V  A  I  D  E  S  C  M  E  I  M  M  L  L  L  K  H  S  P  N  L  E  V  L  N  L  F  S  D  E  N  Y  G  W  D  E  N  W  K  F  H  D  P  S  E  S  V  L  C  L  E  S  H  L  K  L  I  Q  L  A  G  F  K  N  E  D  K  E  I  E  L  L  R  F  F  L  K  N  A  Q  V  L  E  E  L  I  I  V  W  D  S  C  S  G  I  S  E  E  A  I  E  E  V  S  N  F  P  R  A  S  S  H  V  V  V  S  F  L  N  F  K  P  K  S  R  S  R  Y  R  D  N  S  V  *  K  R  F  *  L  *  D  A  M  L  L  G  L  G  L  S  K  N  V  V  L  L  L  E  G  P  T  Y  I  *  S  V  Q  V  T  *  V  R  S  T  L  F  G  N  *  C  M  S  K  H  M  K  P  *  R  I  S  T  T  V  S  P  F  Q  R  A  L  D  R  L  Q  *  S  I  F  D  S  G  Q  R  S  I  Q  L  V  D  R  C  Y  M  R  I  Q  D  L  G  S  I  S  H  L  F  L  H  Y  M  V  V  V  D  L  *  N  V  F  Y  Y  V  F  G  L  A  *  V  M  P  Y  T  V  K  D  A  Y  E  C  F  N  H  E  E  D  L  D  V  P  A  S  I  D  V  F  G  V  F  Q  L  Q  I  T  P  P  N  Y  K  L  D  V  C  V  T  Y  L  G  *  *  T  T  *  V  M  *  I  T  *  S  L  L  *  L  L  H  L  H  D  V  F  L  N  K  T  Y  L  F  H  Q  R  E  W  I   </second_frame>
            <third_frame>   M  I  T  D  *  P  F  R  R  S  E  N  P  K  N  G  *  S  S  S  L  F  T  L  I  *  L  I  N  L  R  M  R  G  N  L  T  I  Y  L  *  S  V  L  F  S  A  F  K  S  F  K  K  W  M  I  *  C  K  N  H  *  K  P  P  I  F  *  L  Y  L  L  T  V  Q  V  K  E  L  I  E  L  A  I  C  R  M  I  Y  C  T  I  Y  F  H  I  C  T  S  L  M  L  F  S  *  A  F  Y  R  K  D  G  T  I  Y  G  G  Q  C  L  T  *  I  L  I  L  I  A  L  V  V  K  G  L  I  G  F  G  I  W  V  W  L  R  N  S  K  I  L  S  I  G  C  *  L  T  D  V  G  I  A  L  F  V  L  S  F  V  V  G  I  F  L  V  K  G  L  F  F  D  G  F  V  L  *  Q  L  E  M  F  K  N  S  C  *  I  F  V  L  L  S  H  L  S  C  H  I  V  L  *  L  V  N  P  C  E  F  *  N  Y  G  L  M  G  L  Y  L  S  C  L  I  I  L  D  F  I  S  L  N  F  F  I  L  K  K  L  S  Y  Q  T  S  I  *  R  V  A  C  S  Q  D  *  R  N  W  Y  W  M  V  V  L  L  E  L  *  L  C  L  I  L  F  Q  R  L  W  F  M  C  L  Y  *  T  M  S  I  T  *  K  L  T  T  I  V  S  S  R  F  L  A  R  I  S  R  S  *  N  M  V  L  H  W  Q  R  I  *  S  *  R  I  S  C  L  *  K  L  F  T  S  Y  F  F  I  Q  T  M  *  *  K  K  L  E  C  V  C  I  R  C  S  R  M  S  L  L  H  Q  L  *  N  Y  A  K  V  L  L  L  V  C  I  V  Y  F  M  E  *  E  T  S  R  S  R  F  I  S  S  S  P  *  N  W  Q  W  Q  L  T  N  L  A  W  K  S  *  C  Y  C  S  S  I  L  L  I  *  R  F  L  I  C  F  L  M  R  I  T  V  G  M  K  T  G  S  S  M  I  L  V  K  A  F  C  A  W  S  L  I  *  S  *  F  S  W  L  V  S  K  M  K  I  K  R  *  S  Y  *  G  F  S  S  R  M  H  K  Y  *  K  N  *  *  L  F  G  I  A  V  V  A  Y  Q  K  R  Q  *  R  R  F  P  T  F  L  E  L  L  H  M  L  L  S  H  F  L  I  S  N  P  N  Q  D  L  V  T  G  T  I  Q  F  K  R  G  S  D  C  E  T  L  C  C  L  D  L  D  S  P  K  M  L  Y  Y  F  W  K  V  R  H  T  F  E  V  S  K  *  H  R  L  E  V  P  F  L  G  T  S  A  *  A  S  T  *  S  L  N  E  F  L  L  L  F  R  L  F  K  E  H  W  T  D  F  N  E  A  Y  L  T  P  D  K  E  A  F  N  L  S  T  D  V  T  C  V  Y  K  I  *  E  V  S  V  I  S  F  C  T  I  W  L  L  L  T  S  E  T  C  F  I  M  F  S  D  S  R  R  S  C  H  T  Q  L  K  M  H  M  N  A  L  I  M  K  K  I  W  M  S  L  Q  V  L  M  F  L  V  Y  F  N  S  K  L  L  L  P  T  I  S  *  M  F  V  *  L  I  *  V  D  E  Q  L  K  S  C  K  L  L  D  L  F  C  N  F  C  I  F  M  M  F  F  S  I  K  L  T  Y  F  I  K  E  N  G  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21007" stop="19556"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILQKMDDLMQKSLKTPDFLAVFTNSTSEGIDRISYLPDDILHNILSYLYIFDVVQLSILSKRWNYIWRTMPYLNFDINSFGCERIDRLWDMGMAEKFKDFINWVLINRCGDSLVCFKLCCGDIFGKRAIFRWVRVVTARNVQELVLDFCPAEPFELPYCVVTCESLRVLKLRLDGSVLKLSNHFGFHQLKFLHLEKVELSNEHLTSCLFSRLEKLVLDGCTFGTMTMLDIVSTSLVYVSLLNYVNNVEAYNNCIVKISCPNLKVLKYGAPLAKDMIIENLLSIEVVHILFFYSDDVIKEIGMRLHKVFKNVASTSALKLCKGSVVGLYSVFHGVRNFPVTFYKLKSLKLAVAIDESCMEIMMLLLKHSPNLEVLNLFSDENYGWDENWKFHDPSESVLCLESHLKLIQLAGFKNEDKEIELLRFFLKNAQVLEELIIVWDSCSGISEEAIEEVSNFPRASSHVVVSFLNFKPKSRSRYRDNSV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19269" stop="19060"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSVISFCTIWLLLTSETCFIMFSDSRRSCHTQLKMHMNALIMKKIWMSLQVLMFLVYFNSKLLLPTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31119" PGL_stop="23984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31098" e_stop="30876"/>
            <exon e_start="30800" e_stop="30671"/>
            <exon e_start="29053" e_stop="28986"/>
            <exon e_start="28912" e_stop="28811"/>
            <exon e_start="28668" e_stop="28516"/>
            <exon e_start="28314" e_stop="28237"/>
            <exon e_start="28064" e_stop="27939"/>
            <exon e_start="27859" e_stop="27757"/>
            <exon e_start="26840" e_stop="26740"/>
            <exon e_start="26118" e_stop="25981"/>
            <exon e_start="25891" e_stop="25748"/>
            <exon e_start="25482" e_stop="25407"/>
            <exon e_start="25137" e_stop="25052"/>
            <exon e_start="24941" e_stop="24816"/>
            <exon e_start="24348" e_stop="23984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31098" e_stop="30876" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30800" e_stop="30671" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29053" e_stop="28986" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.920">
            <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28912" e_stop="28811" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28668" e_stop="28516" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.771" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28314" e_stop="28237" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.977">
            <gDNA_intron_boundary i_start="28236" i_stop="28065" i_length="172"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28064" e_stop="27939" e_length="126"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27859" e_stop="27757" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.872" acc_prob="0.891">
            <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26840" e_stop="26740" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26118" e_stop="25981" e_length="138"/>
          </exon>
          <intron i_serial="10" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25891" e_stop="25748" e_length="144"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25482" e_stop="25407" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.881" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="25137" e_stop="25052" e_length="86"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="24941" e_stop="24816" e_length="126"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467"/>
          </intron>
          <exon e_serial="15" e_score="0.981">
            <gDNA_exon_boundary e_start="24348" e_stop="23984" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31098" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31096" stop="30876"/>
              <exon start="30800" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31094" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31093" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31091" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31091" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31062" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="28042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31060" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31052" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31033" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30966" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="28045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30738" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="27939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29022" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="28010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28999" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28849" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28623" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="28052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28579" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28308" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28260" stop="28237"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27977" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27841" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27824" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27819" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26028" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25131" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="23984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT : AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG : AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT : GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG : ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG : GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</gDNA_template>
            <first_frame> E  E  K  S  F  N  F  C  F  F  F  *  L  F  V  L  *  S  Y  H  G  S  H  C  F  F  H  F  N  Y  G  F  S  P  F  L  S  T  F  *  S  H  P  F  I  F  *  T  *  S  H  L  *  F  F  F  F  L  D  W  F  Y  S  F  S  F  I  F  F  K  K  F  I  Y   : *  G  Y  M  E  G  D  Q  F  Q  E  C  G  K  K  G  N  E  W  S  Y  *  S  *  D  V  W  A  A  H  *  R  I  G  K  C  L  E  Q  A  Q  R  R  R :   G  F  D  Q  G  K  H  R  G  T  Y  E  G  H  Q  E  G  S  F  R  S  *   : C  *  S  P  S  C  Q  K  V  C  S  V  C  *  *  R  S  R  W  H  W  F  D  S  R  C  K  T  R  S  A  T  S  *   : D  C  T  *  R  A  C  E  T  D  G  W  R  G  F  *  T  G  F  C  *  I  *  A  H  R  N  T  I  G  R  S  T  R  C  W  E  D  N  C  *  C  K  V  S  F  I  S  K  E  A   : G  *  E  L  H  A  D  C  W  R  R  V  Q  T  C  C  Y  *  P  T  C  Y  F  G  *  T   : G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S  P  T  R  I  T  R  G  Q  K  E  E  C  R  C  S  H  N  G  Y  S  W  K  T  S   : D  R  *  N  Y  D  G  *  I  K  R  R  E  T  G  T  E  P  H  R  G  F  T  C  C  G  C  N  D  W  P  R  S  C  S :   F  G  H  N  I  Q  S  R  N  W  N  Y  W  C  H  L  D  E  A  R  W  R  F  *  G  W  S  S  F  K  C  Q  G   : G  I  R  K  A  N  Q  A  R  R  K  G  *  T  Y  G  G  P  *  T  F  L  S  *  P  H  G  W  T  Y  F  R  N  G  R  C  S  I  V  C  *  E  S  P  R  S   : Y  A  S  R  R  C  *  R  F  A  E  E  D  H  E  C  K  I  *  F  Q  *  L  P  E  A  N  S  G  S  C  *  D  G  Y  H  V  A  C  Y  W  Y  D  A  W  H  G  K   : G  Y  S  C  T  N  S  R  G  R  E  E  L  K  D  N  G  V  N  D  R  C  H  D  T  R :   G  E  G  A  T  R  I  V  S  R  I  S  C  *  K  E  T  Y  R  S  R  I  W  E  N  *  A  T   : G  E  S  T  C  C  S  T  F  S  N  A  C  T  Y  E  E  F  D  G  R  Y  G  R  W  F  D  S  C  T  E  *  S  R  G  G  T  K  I  *  T  A   : G  S  S  R  Y  C  K  E  E  A  K  V  R  T  K  E  T  I  C  R  L  G  I  S  *  A  *  P  S  W  F  R  G  Q  E  L  K  Y  K  T  S  M  S  N  K  F  L  N  L  *  L  A  I  Y  E  Y  Q  L  E  K  G  I  V  S  K  K  G  N  D  Q  L  E  K  G  S  S  *  Q  D  N  I  *  Y  I  V  C  T  L  N  Y  I  V  L  S  L  F  L  C  N  Y  C  L  L  D  I  S  Y  Y  L  V  I  L  K  I  S  L  F  F  P  L  L  * </first_frame>
            <second_frame>  K  K  K  A  S  I  F  A  S  S  F  D  C  L  F  F  N  P  T  M  E  A  T  A  S  F  T  S  T  M  A  S  H  H  F  F  P  L  S  K  A  T  L  S  S  S  K  L  N  P  T  C  N  S  S  S  S  W  I  G  S  T  H  S  L  S  F  S  S  R  N  S  F  T  :  R  D  T  W  R  V  I  N  S  K  N  V  V  R  R  E  M  S  G  V  I  R  A  E  M  F  G  Q  L  T  S  G  L  E  N  A  W  N  K  L  K  G  E   : E  V  L  T  K  E  N  I  V  E  P  M  R  D  I  R  R  A  L  L  E  A  D  :  V  S  L  P  V  V  R  R  F  V  Q  S  V  S  E  E  A  V  G  T  G  L  I  R  G  V  K  P  D  Q  Q  L  V  K  :  T  V  R  D  E  L  V  K  L  M  G  G  E  V  S  E  L  V  F  A  K  S  K  P  T  V  I  L  L  A  G  L  Q  G  V  G  K  T  T  V  S  A  K  L  A  L  Y  L  K  K  Q  :  G  K  S  C  M  L  I  A  G  D  V  Y  R  P  A  A  I  D  Q  L  V  I  L  G  K  Q  :  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  R  Q  G  L  Q  E  A  K  K  K  N  V  D  V  V  I  M  D  T  A  G  R  L  Q  :  I  D  K  T  M  M  D  E  L  K  D  V  K  R  V  L  N  P  T  E  V  L  L  V  V  D  A  M  T  G  Q  E  A  A   : A  L  V  T  T  F  N  L  E  I  G  I  T  G  A  I  L  T  K  L  D  G  D  S  R  G  G  A  A  L  S  V  K  E  :  V  S  G  K  P  I  K  L  V  G  R  G  E  R  M  E  D  L  E  P  F  Y  P  D  R  M  A  G  R  I  L  G  M  G  D  V  L  S  F  V  E  K  A  Q  E  V  :  M  R  Q  E  D  A  E  D  L  Q  K  K  I  M  S  A  K  F  D  F  N  D  F  L  K  Q  T  R  A  V  A  R  M  G  T  M  S  R  V  I  G  M  M  P  G  M  G  K  :  V  T  P  A  Q  I  R  E  A  E  K  S  L  K  I  M  E  S  M  I  D  V  M  T  P   : E  E  R  E  Q  P  E  L  L  A  E  S  P  A  R  R  K  R  I  A  Q  E  S  G  K  T  E  Q  Q  :  V  S  Q  L  V  A  Q  L  F  Q  M  R  V  R  M  K  N  L  M  G  V  M  E  G  G  S  I  P  A  L  S  N  L  E  E  A  L  K  S  E  Q  Q  :  A  P  P  G  T  A  R  R  K  R  R  S  E  P  R  K  Q  F  A  D  S  G  S  A  R  P  S  P  R  G  F  G  A  K  N  *  S  I  R  L  V  C  Q  T  N  F  *  I  F  D  *  L  S  M  S  I  N  *  K  K  E  L  *  A  K  K  E  M  I  N  *  K  R  E  V  L  D  K  I  I  Y  S  T  L  Y  V  L  S  T  I  *  F  C  P  S  S  C  V  T  I  V  F  L  I  Y  L  I  I  L  *  S  *  K  F  H  C  F  S  H  S  F   </second_frame>
            <third_frame>   R  K  K  L  Q  F  L  L  L  L  L  I  V  C  S  L  I  L  P  W  K  P  L  L  L  S  L  Q  L  W  L  L  T  I  S  F  H  F  L  K  P  P  F  H  L  L  N  L  I  P  L  V  I  L  L  L  L  G  L  V  L  L  I  L  F  H  F  L  Q  E  I  H  L  L :   G  I  H  G  G  *  S  I  P  R  M  W  *  E  G  K  *  V  E  L  L  E  L  R  C  L  G  S  S  L  A  D  W  K  M  L  G  T  S  S  K  E  K  :  R  F  *  P  R  K  T  S  W  N  L  *  G  T  S  G  G  L  F  *  K  L  M :   L  V  S  Q  L  S  E  G  L  F  S  L  L  V  K  K  P  L  A  L  V  *  F  E  V  *  N  Q  I  S  N  *  L  R :   L  Y  V  T  S  L  *  N  *  W  V  E  R  F  L  N  W  F  L  L  N  L  S  P  P  *  Y  Y  W  P  V  Y  K  V  L  G  R  Q  L  L  V  Q  S  *  L  Y  I  *  R  S  R :   V  R  V  A  C  *  L  L  E  T  C  T  D  L  L  L  L  T  N  L  L  F  W  V  N  R :   L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P  D  K  D  Y  K  R  P  K  R  R  M  *  M  *  S  *  W  I  Q  L  E  D  F  R :   *  I  K  L  *  W  M  N  *  K  T  *  N  G  Y  *  T  P  Q  R  F  Y  L  L  W  M  Q  *  L  A  K  K  L  Q  :  L  W  S  Q  H  S  I  S  K  L  E  L  L  V  P  S  *  R  S  *  M  E  I  L  G  V  E  Q  L  *  V  S  R  R :   Y  Q  E  S  Q  S  S  S  *  E  G  V  N  V  W  R  T  L  N  L  S  I  L  T  A  W  L  D  V  F  *  E  W  E  M  F  Y  R  L  L  R  K  P  K  K  L :   C  V  K  K  M  L  K  I  C  R  R  R  S  *  V  Q  N  L  I  S  M  T  S  *  S  K  L  G  Q  L  L  G  W  V  P  C  R  V  L  L  V  *  C  L  A  W  E  R :   L  L  L  H  K  F  E  R  Q  R  R  A  *  R  *  W  S  Q  *  *  M  S  *  H  Q  :  R  R  G  S  N  Q  N  C  *  Q  N  L  L  L  E  G  N  V  S  L  K  N  L  G  K  L  S  N  R :   *  V  N  L  L  L  N  F  F  K  C  V  Y  V  *  R  I  *  W  A  L  W  K  V  V  R  F  L  H  *  V  I  *  R  R  H  *  N  L  N  S  R :   L  L  P  V  L  Q  G  G  S  E  G  Q  N  Q  G  N  N  L  Q  T  R  D  Q  L  G  L  A  L  V  V  S  G  P  R  T  E  V  *  D  *  Y  V  K  Q  I  F  E  S  L  T  S  Y  L  *  V  S  T  R  K  R  N  C  E  Q  K  R  K  *  S  T  R  K  G  K  F  L  T  R  *  Y  I  V  H  C  M  Y  S  Q  L  Y  S  F  V  P  L  L  V  *  L  L  S  S  *  Y  I  L  L  S  C  N  L  E  N  F  I  V  F  P  T  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31097" stop="30876"/>
                    <exon start="30800" stop="30671"/>
                    <exon start="29053" stop="28986"/>
                    <exon start="28912" stop="28811"/>
                    <exon start="28668" stop="28516"/>
                    <exon start="28314" stop="28237"/>
                    <exon start="28064" stop="27939"/>
                    <exon start="27859" stop="27757"/>
                    <exon start="26840" stop="26740"/>
                    <exon start="26118" stop="25981"/>
                    <exon start="25891" stop="25748"/>
                    <exon start="25482" stop="25407"/>
                    <exon start="25137" stop="25052"/>
                    <exon start="24941" stop="24816"/>
                    <exon start="24348" stop="24241"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1758</number_coding_nucleotides>
                  <number_encoded_amino_acids>586</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKASIFASSFDCLFFNPTMEATASFTSTMASHHFFPLSKATLSSSKLNPTCNSSSSWIGSTHSLSFSSRNSFTRDTWRVINSKNVVRREMSGVIRAEMFGQLTSGLENAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSEEAVGTGLIRGVKPDQQLVKTVRDELVKLMGGEVSELVFAKSKPTVILLAGLQGVGKTTVSAKLALYLKKQGKSCMLIAGDVYRPAAIDQLVILGKQVDVPVYAAGTDVKPAEIARQGLQEAKKKNVDVVIMDTAGRLQIDKTMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGTMSRVIGMMPGMGKVTPAQIREAEKSLKIMESMIDVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLEEALKSEQQAPPGTARRKRRSEPRKQFADSGSARPSPRGFGAKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="31098" e_stop="30876"/>
            <exon e_start="30800" e_stop="30671"/>
            <exon e_start="29053" e_stop="28986"/>
            <exon e_start="28912" e_stop="28811"/>
            <exon e_start="28668" e_stop="28516"/>
            <exon e_start="28314" e_stop="28237"/>
            <exon e_start="28075" e_stop="27939"/>
            <exon e_start="27859" e_stop="27757"/>
            <exon e_start="26840" e_stop="26740"/>
            <exon e_start="26118" e_stop="25981"/>
            <exon e_start="25891" e_stop="25748"/>
            <exon e_start="25482" e_stop="25407"/>
            <exon e_start="25137" e_stop="25052"/>
            <exon e_start="24941" e_stop="24816"/>
            <exon e_start="24348" e_stop="23984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.515" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31098" e_stop="30876" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30800" e_stop="30671" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29053" e_stop="28986" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.920">
            <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28912" e_stop="28811" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28668" e_stop="28516" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.771" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28515" i_stop="28315" i_length="201"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28314" e_stop="28237" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.970" acc_prob="0.515">
            <gDNA_intron_boundary i_start="28236" i_stop="28076" i_length="161"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28075" e_stop="27939" e_length="137"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27859" e_stop="27757" e_length="103"/>
          </exon>
          <intron i_serial="8" don_prob="0.872" acc_prob="0.891">
            <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26840" e_stop="26740" e_length="101"/>
          </exon>
          <intron i_serial="9" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="26118" e_stop="25981" e_length="138"/>
          </exon>
          <intron i_serial="10" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25891" e_stop="25748" e_length="144"/>
          </exon>
          <intron i_serial="11" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25482" e_stop="25407" e_length="76"/>
          </exon>
          <intron i_serial="12" don_prob="0.881" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="25137" e_stop="25052" e_length="86"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="24941" e_stop="24816" e_length="126"/>
          </exon>
          <intron i_serial="14" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467"/>
          </intron>
          <exon e_serial="15" e_score="0.981">
            <gDNA_exon_boundary e_start="24348" e_stop="23984" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31098" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31096" stop="30876"/>
              <exon start="30800" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31094" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31093" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31091" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31091" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31052" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31033" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28314" stop="28262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28564" stop="28516"/>
              <exon start="28314" stop="28237"/>
              <exon start="28075" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27977" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27841" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27824" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27819" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26028" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25131" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="23984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT : AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG : AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT : GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG : ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGGTAAACAG : TGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</gDNA_template>
            <first_frame> E  E  K  S  F  N  F  C  F  F  F  *  L  F  V  L  *  S  Y  H  G  S  H  C  F  F  H  F  N  Y  G  F  S  P  F  L  S  T  F  *  S  H  P  F  I  F  *  T  *  S  H  L  *  F  F  F  F  L  D  W  F  Y  S  F  S  F  I  F  F  K  K  F  I  Y   : *  G  Y  M  E  G  D  Q  F  Q  E  C  G  K  K  G  N  E  W  S  Y  *  S  *  D  V  W  A  A  H  *  R  I  G  K  C  L  E  Q  A  Q  R  R  R :   G  F  D  Q  G  K  H  R  G  T  Y  E  G  H  Q  E  G  S  F  R  S  *   : C  *  S  P  S  C  Q  K  V  C  S  V  C  *  *  R  S  R  W  H  W  F  D  S  R  C  K  T  R  S  A  T  S  *   : D  C  T  *  R  A  C  E  T  D  G  W  R  G  F  *  T  G  F  C  *  I  *  A  H  R  N  T  I  G  R  S  T  R  C  W  E  D  N  C  *  C  K  V  S  F  I  S  K  E  A   : G  *  E  L  H  A  D  C  W  R  R  V  Q  T  C  C  Y  *  P  T  C  Y  F  G  *  T   : V  G  E  Q  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  R  Q  G  L  Q  E  A  K  K  K  N  V  D  V  V  I  M  D  T  A  G  R  L  Q  :  I  D  K  T  M  M  D  E  L  K  D  V  K  R  V  L  N  P  T  E  V  L  L  V  V  D  A  M  T  G  Q  E  A  A   : A  L  V  T  T  F  N  L  E  I  G  I  T  G  A  I  L  T  K  L  D  G  D  S  R  G  G  A  A  L  S  V  K  E  :  V  S  G  K  P  I  K  L  V  G  R  G  E  R  M  E  D  L  E  P  F  Y  P  D  R  M  A  G  R  I  L  G  M  G  D  V  L  S  F  V  E  K  A  Q  E  V  :  M  R  Q  E  D  A  E  D  L  Q  K  K  I  M  S  A  K  F  D  F  N  D  F  L  K  Q  T  R  A  V  A  R  M  G  T  M  S  R  V  I  G  M  M  P  G  M  G  K  :  V  T  P  A  Q  I  R  E  A  E  K  S  L  K  I  M  E  S  M  I  D  V  M  T  P   : E  E  R  E  Q  P  E  L  L  A  E  S  P  A  R  R  K  R  I  A  Q  E  S  G  K  T  E  Q  Q  :  V  S  Q  L  V  A  Q  L  F  Q  M  R  V  R  M  K  N  L  M  G  V  M  E  G  G  S  I  P  A  L  S  N  L  E  E  A  L  K  S  E  Q  Q  :  A  P  P  G  T  A  R  R  K  R  R  S  E  P  R  K  Q  F  A  D  S  G  S  A  R  P  S  P  R  G  F  G  A  K  N  *  S  I  R  L  V  C  Q  T  N  F  *  I  F  D  *  L  S  M  S  I  N  *  K  K  E  L  *  A  K  K  E  M  I  N  *  K  R  E  V  L  D  K  I  I  Y  S  T  L  Y  V  L  S  T  I  *  F  C  P  S  S  C  V  T  I  V  F  L  I  Y  L  I  I  L  *  S  *  K  F  H  C  F  S  H  S  F   </first_frame>
            <second_frame>  K  K  K  A  S  I  F  A  S  S  F  D  C  L  F  F  N  P  T  M  E  A  T  A  S  F  T  S  T  M  A  S  H  H  F  F  P  L  S  K  A  T  L  S  S  S  K  L  N  P  T  C  N  S  S  S  S  W  I  G  S  T  H  S  L  S  F  S  S  R  N  S  F  T  :  R  D  T  W  R  V  I  N  S  K  N  V  V  R  R  E  M  S  G  V  I  R  A  E  M  F  G  Q  L  T  S  G  L  E  N  A  W  N  K  L  K  G  E   : E  V  L  T  K  E  N  I  V  E  P  M  R  D  I  R  R  A  L  L  E  A  D  :  V  S  L  P  V  V  R  R  F  V  Q  S  V  S  E  E  A  V  G  T  G  L  I  R  G  V  K  P  D  Q  Q  L  V  K  :  T  V  R  D  E  L  V  K  L  M  G  G  E  V  S  E  L  V  F  A  K  S  K  P  T  V  I  L  L  A  G  L  Q  G  V  G  K  T  T  V  S  A  K  L  A  L  Y  L  K  K  Q  :  G  K  S  C  M  L  I  A  G  D  V  Y  R  P  A  A  I  D  Q  L  V  I  L  G  K  Q  :  W  G  N  R  L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P  D  K  D  Y  K  R  P  K  R  R  M  *  M  *  S  *  W  I  Q  L  E  D  F  R :   *  I  K  L  *  W  M  N  *  K  T  *  N  G  Y  *  T  P  Q  R  F  Y  L  L  W  M  Q  *  L  A  K  K  L  Q  :  L  W  S  Q  H  S  I  S  K  L  E  L  L  V  P  S  *  R  S  *  M  E  I  L  G  V  E  Q  L  *  V  S  R  R :   Y  Q  E  S  Q  S  S  S  *  E  G  V  N  V  W  R  T  L  N  L  S  I  L  T  A  W  L  D  V  F  *  E  W  E  M  F  Y  R  L  L  R  K  P  K  K  L :   C  V  K  K  M  L  K  I  C  R  R  R  S  *  V  Q  N  L  I  S  M  T  S  *  S  K  L  G  Q  L  L  G  W  V  P  C  R  V  L  L  V  *  C  L  A  W  E  R :   L  L  L  H  K  F  E  R  Q  R  R  A  *  R  *  W  S  Q  *  *  M  S  *  H  Q  :  R  R  G  S  N  Q  N  C  *  Q  N  L  L  L  E  G  N  V  S  L  K  N  L  G  K  L  S  N  R :   *  V  N  L  L  L  N  F  F  K  C  V  Y  V  *  R  I  *  W  A  L  W  K  V  V  R  F  L  H  *  V  I  *  R  R  H  *  N  L  N  S  R :   L  L  P  V  L  Q  G  G  S  E  G  Q  N  Q  G  N  N  L  Q  T  R  D  Q  L  G  L  A  L  V  V  S  G  P  R  T  E  V  *  D  *  Y  V  K  Q  I  F  E  S  L  T  S  Y  L  *  V  S  T  R  K  R  N  C  E  Q  K  R  K  *  S  T  R  K  G  K  F  L  T  R  *  Y  I  V  H  C  M  Y  S  Q  L  Y  S  F  V  P  L  L  V  *  L  L  S  S  *  Y  I  L  L  S  C  N  L  E  N  F  I  V  F  P  T  P  L  </second_frame>
            <third_frame>   R  K  K  L  Q  F  L  L  L  L  L  I  V  C  S  L  I  L  P  W  K  P  L  L  L  S  L  Q  L  W  L  L  T  I  S  F  H  F  L  K  P  P  F  H  L  L  N  L  I  P  L  V  I  L  L  L  L  G  L  V  L  L  I  L  F  H  F  L  Q  E  I  H  L  L :   G  I  H  G  G  *  S  I  P  R  M  W  *  E  G  K  *  V  E  L  L  E  L  R  C  L  G  S  S  L  A  D  W  K  M  L  G  T  S  S  K  E  K  :  R  F  *  P  R  K  T  S  W  N  L  *  G  T  S  G  G  L  F  *  K  L  M :   L  V  S  Q  L  S  E  G  L  F  S  L  L  V  K  K  P  L  A  L  V  *  F  E  V  *  N  Q  I  S  N  *  L  R :   L  Y  V  T  S  L  *  N  *  W  V  E  R  F  L  N  W  F  L  L  N  L  S  P  P  *  Y  Y  W  P  V  Y  K  V  L  G  R  Q  L  L  V  Q  S  *  L  Y  I  *  R  S  R :   V  R  V  A  C  *  L  L  E  T  C  T  D  L  L  L  L  T  N  L  L  F  W  V  N  S :   G  G  T  G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S  P  T  R  I  T  R  G  Q  K  E  E  C  R  C  S  H  N  G  Y  S  W  K  T  S   : D  R  *  N  Y  D  G  *  I  K  R  R  E  T  G  T  E  P  H  R  G  F  T  C  C  G  C  N  D  W  P  R  S  C  S :   F  G  H  N  I  Q  S  R  N  W  N  Y  W  C  H  L  D  E  A  R  W  R  F  *  G  W  S  S  F  K  C  Q  G   : G  I  R  K  A  N  Q  A  R  R  K  G  *  T  Y  G  G  P  *  T  F  L  S  *  P  H  G  W  T  Y  F  R  N  G  R  C  S  I  V  C  *  E  S  P  R  S   : Y  A  S  R  R  C  *  R  F  A  E  E  D  H  E  C  K  I  *  F  Q  *  L  P  E  A  N  S  G  S  C  *  D  G  Y  H  V  A  C  Y  W  Y  D  A  W  H  G  K   : G  Y  S  C  T  N  S  R  G  R  E  E  L  K  D  N  G  V  N  D  R  C  H  D  T  R :   G  E  G  A  T  R  I  V  S  R  I  S  C  *  K  E  T  Y  R  S  R  I  W  E  N  *  A  T   : G  E  S  T  C  C  S  T  F  S  N  A  C  T  Y  E  E  F  D  G  R  Y  G  R  W  F  D  S  C  T  E  *  S  R  G  G  T  K  I  *  T  A   : G  S  S  R  Y  C  K  E  E  A  K  V  R  T  K  E  T  I  C  R  L  G  I  S  *  A  *  P  S  W  F  R  G  Q  E  L  K  Y  K  T  S  M  S  N  K  F  L  N  L  *  L  A  I  Y  E  Y  Q  L  E  K  G  I  V  S  K  K  G  N  D  Q  L  E  K  G  S  S  *  Q  D  N  I  *  Y  I  V  C  T  L  N  Y  I  V  L  S  L  F  L  C  N  Y  C  L  L  D  I  S  Y  Y  L  V  I  L  K  I  S  L  F  F  P  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28240" stop="28237"/>
                    <exon start="28075" stop="27939"/>
                    <exon start="27859" stop="27757"/>
                    <exon start="26840" stop="26740"/>
                    <exon start="26118" stop="25981"/>
                    <exon start="25891" stop="25748"/>
                    <exon start="25482" stop="25407"/>
                    <exon start="25137" stop="25052"/>
                    <exon start="24941" stop="24816"/>
                    <exon start="24348" stop="24241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVGEQVDVPVYAAGTDVKPAEIARQGLQEAKKKNVDVVIMDTAGRLQIDKTMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGTMSRVIGMMPGMGKVTPAQIREAEKSLKIMESMIDVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLEEALKSEQQAPPGTARRKRRSEPRKQFADSGSARPSPRGFGAKN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31096" stop="30876"/>
                    <exon start="30800" stop="30782"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKLQFLLLLLIVCSLILPWKPLLLSLQLWLLTISFHFLKPPFHLLNLIPLVILLLLGLVLLILFHFLQEIHLLGIHGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="31119" e_stop="30876"/>
            <exon e_start="30800" e_stop="30671"/>
            <exon e_start="29053" e_stop="28986"/>
            <exon e_start="28912" e_stop="28811"/>
            <exon e_start="28668" e_stop="28516"/>
            <exon e_start="28064" e_stop="27939"/>
            <exon e_start="27859" e_stop="27757"/>
            <exon e_start="26840" e_stop="26740"/>
            <exon e_start="26118" e_stop="25981"/>
            <exon e_start="25891" e_stop="25748"/>
            <exon e_start="25482" e_stop="25407"/>
            <exon e_start="25137" e_stop="25052"/>
            <exon e_start="24941" e_stop="24816"/>
            <exon e_start="24348" e_stop="23984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.771" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31119" e_stop="30876" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30800" e_stop="30671" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="30670" i_stop="29054" i_length="1617"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29053" e_stop="28986" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.920">
            <gDNA_intron_boundary i_start="28985" i_stop="28913" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28912" e_stop="28811" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28810" i_stop="28669" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28668" e_stop="28516" e_length="153"/>
          </exon>
          <intron i_serial="5" don_prob="0.771" acc_prob="0.977">
            <gDNA_intron_boundary i_start="28515" i_stop="28065" i_length="451"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28064" e_stop="27939" e_length="126"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27859" e_stop="27757" e_length="103"/>
          </exon>
          <intron i_serial="7" don_prob="0.872" acc_prob="0.891">
            <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26840" e_stop="26740" e_length="101"/>
          </exon>
          <intron i_serial="8" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26118" e_stop="25981" e_length="138"/>
          </exon>
          <intron i_serial="9" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25891" e_stop="25748" e_length="144"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="25482" e_stop="25407" e_length="76"/>
          </exon>
          <intron i_serial="11" don_prob="0.881" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="25137" e_stop="25052" e_length="86"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="24941" e_stop="24816" e_length="126"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467"/>
          </intron>
          <exon e_serial="14" e_score="0.981">
            <gDNA_exon_boundary e_start="24348" e_stop="23984" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31119" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28516"/>
              <exon start="28064" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31098" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31097" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31096" stop="30876"/>
              <exon start="30800" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31094" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31093" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31091" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31091" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31052" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29053" stop="28986"/>
              <exon start="28912" stop="28811"/>
              <exon start="28668" stop="28603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27977" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27841" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27824" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27819" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26028" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25131" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="23984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGGATAAAGCATAAAAGAAGAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT : AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG : AGGTTTTGACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT : GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACTGGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG : ACTGTACGTGACGAGCTTGTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTAATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</gDNA_template>
            <first_frame> N  G  *  S  I  K  E  E  E  K  S  F  N  F  C  F  F  F  *  L  F  V  L  *  S  Y  H  G  S  H  C  F  F  H  F  N  Y  G  F  S  P  F  L  S  T  F  *  S  H  P  F  I  F  *  T  *  S  H  L  *  F  F  F  F  L  D  W  F  Y  S  F  S  F  I  F  F  K  K  F  I  Y   : *  G  Y  M  E  G  D  Q  F  Q  E  C  G  K  K  G  N  E  W  S  Y  *  S  *  D  V  W  A  A  H  *  R  I  G  K  C  L  E  Q  A  Q  R  R  R :   G  F  D  Q  G  K  H  R  G  T  Y  E  G  H  Q  E  G  S  F  R  S  *   : C  *  S  P  S  C  Q  K  V  C  S  V  C  *  *  R  S  R  W  H  W  F  D  S  R  C  K  T  R  S  A  T  S  *   : D  C  T  *  R  A  C  E  T  D  G  W  R  G  F  *  T  G  F  C  *  I  *  A  H  R  N  T  I  G  R  S  T  R  C  W  E  D  N  C  *  C  K  V  S  F  I  S  K  E  A   : G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S  P  T  R  I  T  R  G  Q  K  E  E  C  R  C  S  H  N  G  Y  S  W  K  T  S   : D  R  *  N  Y  D  G  *  I  K  R  R  E  T  G  T  E  P  H  R  G  F  T  C  C  G  C  N  D  W  P  R  S  C  S :   F  G  H  N  I  Q  S  R  N  W  N  Y  W  C  H  L  D  E  A  R  W  R  F  *  G  W  S  S  F  K  C  Q  G   : G  I  R  K  A  N  Q  A  R  R  K  G  *  T  Y  G  G  P  *  T  F  L  S  *  P  H  G  W  T  Y  F  R  N  G  R  C  S  I  V  C  *  E  S  P  R  S   : Y  A  S  R  R  C  *  R  F  A  E  E  D  H  E  C  K  I  *  F  Q  *  L  P  E  A  N  S  G  S  C  *  D  G  Y  H  V  A  C  Y  W  Y  D  A  W  H  G  K   : G  Y  S  C  T  N  S  R  G  R  E  E  L  K  D  N  G  V  N  D  R  C  H  D  T  R :   G  E  G  A  T  R  I  V  S  R  I  S  C  *  K  E  T  Y  R  S  R  I  W  E  N  *  A  T   : G  E  S  T  C  C  S  T  F  S  N  A  C  T  Y  E  E  F  D  G  R  Y  G  R  W  F  D  S  C  T  E  *  S  R  G  G  T  K  I  *  T  A   : G  S  S  R  Y  C  K  E  E  A  K  V  R  T  K  E  T  I  C  R  L  G  I  S  *  A  *  P  S  W  F  R  G  Q  E  L  K  Y  K  T  S  M  S  N  K  F  L  N  L  *  L  A  I  Y  E  Y  Q  L  E  K  G  I  V  S  K  K  G  N  D  Q  L  E  K  G  S  S  *  Q  D  N  I  *  Y  I  V  C  T  L  N  Y  I  V  L  S  L  F  L  C  N  Y  C  L  L  D  I  S  Y  Y  L  V  I  L  K  I  S  L  F  F  P  L  L  * </first_frame>
            <second_frame>  M  D  K  A  *  K  K  K  K  K  A  S  I  F  A  S  S  F  D  C  L  F  F  N  P  T  M  E  A  T  A  S  F  T  S  T  M  A  S  H  H  F  F  P  L  S  K  A  T  L  S  S  S  K  L  N  P  T  C  N  S  S  S  S  W  I  G  S  T  H  S  L  S  F  S  S  R  N  S  F  T  :  R  D  T  W  R  V  I  N  S  K  N  V  V  R  R  E  M  S  G  V  I  R  A  E  M  F  G  Q  L  T  S  G  L  E  N  A  W  N  K  L  K  G  E   : E  V  L  T  K  E  N  I  V  E  P  M  R  D  I  R  R  A  L  L  E  A  D  :  V  S  L  P  V  V  R  R  F  V  Q  S  V  S  E  E  A  V  G  T  G  L  I  R  G  V  K  P  D  Q  Q  L  V  K  :  T  V  R  D  E  L  V  K  L  M  G  G  E  V  S  E  L  V  F  A  K  S  K  P  T  V  I  L  L  A  G  L  Q  G  V  G  K  T  T  V  S  A  K  L  A  L  Y  L  K  K  Q  :  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  R  Q  G  L  Q  E  A  K  K  K  N  V  D  V  V  I  M  D  T  A  G  R  L  Q  :  I  D  K  T  M  M  D  E  L  K  D  V  K  R  V  L  N  P  T  E  V  L  L  V  V  D  A  M  T  G  Q  E  A  A   : A  L  V  T  T  F  N  L  E  I  G  I  T  G  A  I  L  T  K  L  D  G  D  S  R  G  G  A  A  L  S  V  K  E  :  V  S  G  K  P  I  K  L  V  G  R  G  E  R  M  E  D  L  E  P  F  Y  P  D  R  M  A  G  R  I  L  G  M  G  D  V  L  S  F  V  E  K  A  Q  E  V  :  M  R  Q  E  D  A  E  D  L  Q  K  K  I  M  S  A  K  F  D  F  N  D  F  L  K  Q  T  R  A  V  A  R  M  G  T  M  S  R  V  I  G  M  M  P  G  M  G  K  :  V  T  P  A  Q  I  R  E  A  E  K  S  L  K  I  M  E  S  M  I  D  V  M  T  P   : E  E  R  E  Q  P  E  L  L  A  E  S  P  A  R  R  K  R  I  A  Q  E  S  G  K  T  E  Q  Q  :  V  S  Q  L  V  A  Q  L  F  Q  M  R  V  R  M  K  N  L  M  G  V  M  E  G  G  S  I  P  A  L  S  N  L  E  E  A  L  K  S  E  Q  Q  :  A  P  P  G  T  A  R  R  K  R  R  S  E  P  R  K  Q  F  A  D  S  G  S  A  R  P  S  P  R  G  F  G  A  K  N  *  S  I  R  L  V  C  Q  T  N  F  *  I  F  D  *  L  S  M  S  I  N  *  K  K  E  L  *  A  K  K  E  M  I  N  *  K  R  E  V  L  D  K  I  I  Y  S  T  L  Y  V  L  S  T  I  *  F  C  P  S  S  C  V  T  I  V  F  L  I  Y  L  I  I  L  *  S  *  K  F  H  C  F  S  H  S  F   </second_frame>
            <third_frame>   W  I  K  H  K  R  R  R  K  K  L  Q  F  L  L  L  L  L  I  V  C  S  L  I  L  P  W  K  P  L  L  L  S  L  Q  L  W  L  L  T  I  S  F  H  F  L  K  P  P  F  H  L  L  N  L  I  P  L  V  I  L  L  L  L  G  L  V  L  L  I  L  F  H  F  L  Q  E  I  H  L  L :   G  I  H  G  G  *  S  I  P  R  M  W  *  E  G  K  *  V  E  L  L  E  L  R  C  L  G  S  S  L  A  D  W  K  M  L  G  T  S  S  K  E  K  :  R  F  *  P  R  K  T  S  W  N  L  *  G  T  S  G  G  L  F  *  K  L  M :   L  V  S  Q  L  S  E  G  L  F  S  L  L  V  K  K  P  L  A  L  V  *  F  E  V  *  N  Q  I  S  N  *  L  R :   L  Y  V  T  S  L  *  N  *  W  V  E  R  F  L  N  W  F  L  L  N  L  S  P  P  *  Y  Y  W  P  V  Y  K  V  L  G  R  Q  L  L  V  Q  S  *  L  Y  I  *  R  S  R :   L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P  D  K  D  Y  K  R  P  K  R  R  M  *  M  *  S  *  W  I  Q  L  E  D  F  R :   *  I  K  L  *  W  M  N  *  K  T  *  N  G  Y  *  T  P  Q  R  F  Y  L  L  W  M  Q  *  L  A  K  K  L  Q  :  L  W  S  Q  H  S  I  S  K  L  E  L  L  V  P  S  *  R  S  *  M  E  I  L  G  V  E  Q  L  *  V  S  R  R :   Y  Q  E  S  Q  S  S  S  *  E  G  V  N  V  W  R  T  L  N  L  S  I  L  T  A  W  L  D  V  F  *  E  W  E  M  F  Y  R  L  L  R  K  P  K  K  L :   C  V  K  K  M  L  K  I  C  R  R  R  S  *  V  Q  N  L  I  S  M  T  S  *  S  K  L  G  Q  L  L  G  W  V  P  C  R  V  L  L  V  *  C  L  A  W  E  R :   L  L  L  H  K  F  E  R  Q  R  R  A  *  R  *  W  S  Q  *  *  M  S  *  H  Q  :  R  R  G  S  N  Q  N  C  *  Q  N  L  L  L  E  G  N  V  S  L  K  N  L  G  K  L  S  N  R :   *  V  N  L  L  L  N  F  F  K  C  V  Y  V  *  R  I  *  W  A  L  W  K  V  V  R  F  L  H  *  V  I  *  R  R  H  *  N  L  N  S  R :   L  L  P  V  L  Q  G  G  S  E  G  Q  N  Q  G  N  N  L  Q  T  R  D  Q  L  G  L  A  L  V  V  S  G  P  R  T  E  V  *  D  *  Y  V  K  Q  I  F  E  S  L  T  S  Y  L  *  V  S  T  R  K  R  N  C  E  Q  K  R  K  *  S  T  R  K  G  K  F  L  T  R  *  Y  I  V  H  C  M  Y  S  Q  L  Y  S  F  V  P  L  L  V  *  L  L  S  S  *  Y  I  L  L  S  C  N  L  E  N  F  I  V  F  P  T  P  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31103" stop="30876"/>
                    <exon start="30800" stop="30671"/>
                    <exon start="29053" stop="28986"/>
                    <exon start="28912" stop="28811"/>
                    <exon start="28668" stop="28516"/>
                    <exon start="28064" stop="27939"/>
                    <exon start="27859" stop="27757"/>
                    <exon start="26840" stop="26740"/>
                    <exon start="26118" stop="25981"/>
                    <exon start="25891" stop="25748"/>
                    <exon start="25482" stop="25407"/>
                    <exon start="25137" stop="25052"/>
                    <exon start="24941" stop="24816"/>
                    <exon start="24348" stop="24241"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1686</number_coding_nucleotides>
                  <number_encoded_amino_acids>562</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKKASIFASSFDCLFFNPTMEATASFTSTMASHHFFPLSKATLSSSKLNPTCNSSSSWIGSTHSLSFSSRNSFTRDTWRVINSKNVVRREMSGVIRAEMFGQLTSGLENAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSEEAVGTGLIRGVKPDQQLVKTVRDELVKLMGGEVSELVFAKSKPTVILLAGLQGVGKTTVSAKLALYLKKQVDVPVYAAGTDVKPAEIARQGLQEAKKKNVDVVIMDTAGRLQIDKTMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGTMSRVIGMMPGMGKVTPAQIREAEKSLKIMESMIDVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLEEALKSEQQAPPGTARRKRRSEPRKQFADSGSARPSPRGFGAKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="28166" e_stop="27939"/>
            <exon e_start="27859" e_stop="27757"/>
            <exon e_start="26840" e_stop="26740"/>
            <exon e_start="26118" e_stop="25981"/>
            <exon e_start="25891" e_stop="25748"/>
            <exon e_start="25482" e_stop="25407"/>
            <exon e_start="25137" e_stop="25052"/>
            <exon e_start="24941" e_stop="24816"/>
            <exon e_start="24348" e_stop="23984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.881" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.868" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28166" e_stop="27939" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.976">
            <gDNA_intron_boundary i_start="27938" i_stop="27860" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27859" e_stop="27757" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.872" acc_prob="0.891">
            <gDNA_intron_boundary i_start="27756" i_stop="26841" i_length="916"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26840" e_stop="26740" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26739" i_stop="26119" i_length="621"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26118" e_stop="25981" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25980" i_stop="25892" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25891" e_stop="25748" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.982">
            <gDNA_intron_boundary i_start="25747" i_stop="25483" i_length="265"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25482" e_stop="25407" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.881" acc_prob="0.948">
            <gDNA_intron_boundary i_start="25406" i_stop="25138" i_length="269"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25137" e_stop="25052" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.820">
            <gDNA_intron_boundary i_start="25051" i_stop="24942" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24941" e_stop="24816" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.868">
            <gDNA_intron_boundary i_start="24815" i_stop="24349" i_length="467"/>
          </intron>
          <exon e_serial="9" e_score="0.981">
            <gDNA_exon_boundary e_start="24348" e_stop="23984" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28166" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27977" stop="27939"/>
              <exon start="27859" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27841" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27824" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27819" stop="27757"/>
              <exon start="26840" stop="26740"/>
              <exon start="26118" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="24253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26055" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26028" stop="25981"/>
              <exon start="25891" stop="25748"/>
              <exon start="25482" stop="25407"/>
              <exon start="25137" stop="25052"/>
              <exon start="24941" stop="24820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25131" stop="25052"/>
              <exon start="24941" stop="24816"/>
              <exon start="24348" stop="23984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACACAACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTTGCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTCATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAACGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTTTTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCTGCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCAAGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCTAGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTTTGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAGGAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTACTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTTATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA</gDNA_template>
            <first_frame> Y  T  L  T  I  F  I  Y  I  S  S  L  R  V  H  R  I  S  K  H  N  F  I  H  S  H  V  H  *  *  V  G  E  Q  V  D  V  P  V  Y  A  A  G  T  D  V  K  P  A  E  I  A  R  Q  G  L  Q  E  A  K  K  K  N  V  D  V  V  I  M  D  T  A  G  R  L  Q  :  I  D  K  T  M  M  D  E  L  K  D  V  K  R  V  L  N  P  T  E  V  L  L  V  V  D  A  M  T  G  Q  E  A  A   : A  L  V  T  T  F  N  L  E  I  G  I  T  G  A  I  L  T  K  L  D  G  D  S  R  G  G  A  A  L  S  V  K  E  :  V  S  G  K  P  I  K  L  V  G  R  G  E  R  M  E  D  L  E  P  F  Y  P  D  R  M  A  G  R  I  L  G  M  G  D  V  L  S  F  V  E  K  A  Q  E  V  :  M  R  Q  E  D  A  E  D  L  Q  K  K  I  M  S  A  K  F  D  F  N  D  F  L  K  Q  T  R  A  V  A  R  M  G  T  M  S  R  V  I  G  M  M  P  G  M  G  K  :  V  T  P  A  Q  I  R  E  A  E  K  S  L  K  I  M  E  S  M  I  D  V  M  T  P   : E  E  R  E  Q  P  E  L  L  A  E  S  P  A  R  R  K  R  I  A  Q  E  S  G  K  T  E  Q  Q  :  V  S  Q  L  V  A  Q  L  F  Q  M  R  V  R  M  K  N  L  M  G  V  M  E  G  G  S  I  P  A  L  S  N  L  E  E  A  L  K  S  E  Q  Q  :  A  P  P  G  T  A  R  R  K  R  R  S  E  P  R  K  Q  F  A  D  S  G  S  A  R  P  S  P  R  G  F  G  A  K  N  *  S  I  R  L  V  C  Q  T  N  F  *  I  F  D  *  L  S  M  S  I  N  *  K  K  E  L  *  A  K  K  E  M  I  N  *  K  R  E  V  L  D  K  I  I  Y  S  T  L  Y  V  L  S  T  I  *  F  C  P  S  S  C  V  T  I  V  F  L  I  Y  L  I  I  L  *  S  *  K  F  H  C  F  S  H  S  F   </first_frame>
            <second_frame>  T  P  *  Q  S  L  S  I  Y  L  L  Y  E  Y  T  E  Y  L  N  T  T  S  S  I  L  M  F  T  D  K  W  G  N  R  L  M  Y  L  F  M  Q  Q  E  Q  M  *  N  L  Q  K  *  P  D  K  D  Y  K  R  P  K  R  R  M  *  M  *  S  *  W  I  Q  L  E  D  F  R :   *  I  K  L  *  W  M  N  *  K  T  *  N  G  Y  *  T  P  Q  R  F  Y  L  L  W  M  Q  *  L  A  K  K  L  Q  :  L  W  S  Q  H  S  I  S  K  L  E  L  L  V  P  S  *  R  S  *  M  E  I  L  G  V  E  Q  L  *  V  S  R  R :   Y  Q  E  S  Q  S  S  S  *  E  G  V  N  V  W  R  T  L  N  L  S  I  L  T  A  W  L  D  V  F  *  E  W  E  M  F  Y  R  L  L  R  K  P  K  K  L :   C  V  K  K  M  L  K  I  C  R  R  R  S  *  V  Q  N  L  I  S  M  T  S  *  S  K  L  G  Q  L  L  G  W  V  P  C  R  V  L  L  V  *  C  L  A  W  E  R :   L  L  L  H  K  F  E  R  Q  R  R  A  *  R  *  W  S  Q  *  *  M  S  *  H  Q  :  R  R  G  S  N  Q  N  C  *  Q  N  L  L  L  E  G  N  V  S  L  K  N  L  G  K  L  S  N  R :   *  V  N  L  L  L  N  F  F  K  C  V  Y  V  *  R  I  *  W  A  L  W  K  V  V  R  F  L  H  *  V  I  *  R  R  H  *  N  L  N  S  R :   L  L  P  V  L  Q  G  G  S  E  G  Q  N  Q  G  N  N  L  Q  T  R  D  Q  L  G  L  A  L  V  V  S  G  P  R  T  E  V  *  D  *  Y  V  K  Q  I  F  E  S  L  T  S  Y  L  *  V  S  T  R  K  R  N  C  E  Q  K  R  K  *  S  T  R  K  G  K  F  L  T  R  *  Y  I  V  H  C  M  Y  S  Q  L  Y  S  F  V  P  L  L  V  *  L  L  S  S  *  Y  I  L  L  S  C  N  L  E  N  F  I  V  F  P  T  P  L  </second_frame>
            <third_frame>   H  L  N  N  L  Y  L  Y  I  F  F  T  S  T  Q  N  I  *  T  Q  L  H  P  F  S  C  S  L  I  S  G  G  T  G  *  C  T  C  L  C  S  R  N  R  C  K  T  C  R  N  S  P  T  R  I  T  R  G  Q  K  E  E  C  R  C  S  H  N  G  Y  S  W  K  T  S   : D  R  *  N  Y  D  G  *  I  K  R  R  E  T  G  T  E  P  H  R  G  F  T  C  C  G  C  N  D  W  P  R  S  C  S :   F  G  H  N  I  Q  S  R  N  W  N  Y  W  C  H  L  D  E  A  R  W  R  F  *  G  W  S  S  F  K  C  Q  G   : G  I  R  K  A  N  Q  A  R  R  K  G  *  T  Y  G  G  P  *  T  F  L  S  *  P  H  G  W  T  Y  F  R  N  G  R  C  S  I  V  C  *  E  S  P  R  S   : Y  A  S  R  R  C  *  R  F  A  E  E  D  H  E  C  K  I  *  F  Q  *  L  P  E  A  N  S  G  S  C  *  D  G  Y  H  V  A  C  Y  W  Y  D  A  W  H  G  K   : G  Y  S  C  T  N  S  R  G  R  E  E  L  K  D  N  G  V  N  D  R  C  H  D  T  R :   G  E  G  A  T  R  I  V  S  R  I  S  C  *  K  E  T  Y  R  S  R  I  W  E  N  *  A  T   : G  E  S  T  C  C  S  T  F  S  N  A  C  T  Y  E  E  F  D  G  R  Y  G  R  W  F  D  S  C  T  E  *  S  R  G  G  T  K  I  *  T  A   : G  S  S  R  Y  C  K  E  E  A  K  V  R  T  K  E  T  I  C  R  L  G  I  S  *  A  *  P  S  W  F  R  G  Q  E  L  K  Y  K  T  S  M  S  N  K  F  L  N  L  *  L  A  I  Y  E  Y  Q  L  E  K  G  I  V  S  K  K  G  N  D  Q  L  E  K  G  S  S  *  Q  D  N  I  *  Y  I  V  C  T  L  N  Y  I  V  L  S  L  F  L  C  N  Y  C  L  L  D  I  S  Y  Y  L  V  I  L  K  I  S  L  F  F  P  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28076" stop="27939"/>
                    <exon start="27859" stop="27757"/>
                    <exon start="26840" stop="26740"/>
                    <exon start="26118" stop="25981"/>
                    <exon start="25891" stop="25748"/>
                    <exon start="25482" stop="25407"/>
                    <exon start="25137" stop="25052"/>
                    <exon start="24941" stop="24816"/>
                    <exon start="24348" stop="24241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEQVDVPVYAAGTDVKPAEIARQGLQEAKKKNVDVVIMDTAGRLQIDKTMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRQEDAEDLQKKIMSAKFDFNDFLKQTRAVARMGTMSRVIGMMPGMGKVTPAQIREAEKSLKIMESMIDVMTPEEREQPELLAESPARRKRIAQESGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSIPALSNLEEALKSEQQAPPGTARRKRRSEPRKQFADSGSARPSPRGFGAKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="31100" e_stop="30876"/>
            <exon e_start="30800" e_stop="30671"/>
            <exon e_start="29536" e_stop="29106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="31100" e_stop="30876" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30875" i_stop="30801" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30800" e_stop="30671" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="30670" i_stop="29537" i_length="1134"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="29536" e_stop="29106" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31100" stop="30876"/>
              <exon start="30800" stop="30671"/>
              <exon start="29536" stop="29106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31096" stop="30876"/>
              <exon start="30800" stop="30754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATGGAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAAGCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGTTCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT : AGGGATACATGGAGGGTGATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTTGGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG : GGTGGATGATGAGTTGTCGTAGATGGTAATATTGATCCATTCGAGGAGGTGCCAGATGGGGTATAATGAATTATACTTCAAGAGAAGAAACCGGGAAGATGTATAATTGATTGTTAAACTCCAATGAAGTGTATGGAAAGGGAAGGGGCCTTGCTACTATAAGGTTTTAAATGCAAAGAGTACAACATATTAACAACTATGGCCTATGGGTCATTGGATTTCTATAACAGGGATATACTTCTCCTTTTTAGTTCCATACATTATTGCTGGATATTATAAAGTTGTAGGAATAAATTAATTGGAGAGTATTTTACTGTTAAAAATGTGACTTGTCTGCCTTGTCCAAATTCAAATTTCTAATCATATTTTCTATATCCTCAATCTTTCAAATTTTAGAGGTTGAAGTTCTTATTGCCCTTGTTACTAAATAT</gDNA_template>
            <first_frame> K  K  K  K  A  S  I  F  A  S  S  F  D  C  L  F  F  N  P  T  M  E  A  T  A  S  F  T  S  T  M  A  S  H  H  F  F  P  L  S  K  A  T  L  S  S  S  K  L  N  P  T  C  N  S  S  S  S  W  I  G  S  T  H  S  L  S  F  S  S  R  N  S  F  T  :  R  D  T  W  R  V  I  N  S  K  N  V  V  R  R  E  M  S  G  V  I  R  A  E  M  F  G  Q  L  T  S  G  L  E  N  A  W  N  K  L  K  G  E   : G  W  M  M  S  C  R  R  W  *  Y  *  S  I  R  G  G  A  R  W  G  I  M  N  Y  T  S  R  E  E  T  G  K  M  Y  N  *  L  L  N  S  N  E  V  Y  G  K  G  R  G  L  A  T  I  R  F  *  M  Q  R  V  Q  H  I  N  N  Y  G  L  W  V  I  G  F  L  *  Q  G  Y  T  S  P  F  *  F  H  T  L  L  L  D  I  I  K  L  *  E  *  I  N  W  R  V  F  Y  C  *  K  C  D  L  S  A  L  S  K  F  K  F  L  I  I  F  S  I  S  S  I  F  Q  I  L  E  V  E  V  L  I  A  L  V  T  K  Y </first_frame>
            <second_frame>  R  R  K  K  L  Q  F  L  L  L  L  L  I  V  C  S  L  I  L  P  W  K  P  L  L  L  S  L  Q  L  W  L  L  T  I  S  F  H  F  L  K  P  P  F  H  L  L  N  L  I  P  L  V  I  L  L  L  L  G  L  V  L  L  I  L  F  H  F  L  Q  E  I  H  L  L :   G  I  H  G  G  *  S  I  P  R  M  W  *  E  G  K  *  V  E  L  L  E  L  R  C  L  G  S  S  L  A  D  W  K  M  L  G  T  S  S  K  E  K  :  G  G  *  *  V  V  V  D  G  N  I  D  P  F  E  E  V  P  D  G  V  *  *  I  I  L  Q  E  K  K  P  G  R  C  I  I  D  C  *  T  P  M  K  C  M  E  R  E  G  A  L  L  L  *  G  F  K  C  K  E  Y  N  I  L  T  T  M  A  Y  G  S  L  D  F  Y  N  R  D  I  L  L  L  F  S  S  I  H  Y  C  W  I  L  *  S  C  R  N  K  L  I  G  E  Y  F  T  V  K  N  V  T  C  L  P  C  P  N  S  N  F  *  S  Y  F  L  Y  P  Q  S  F  K  F  *  R  L  K  F  L  L  P  L  L  L  N   </second_frame>
            <third_frame>   E  E  K  S  F  N  F  C  F  F  F  *  L  F  V  L  *  S  Y  H  G  S  H  C  F  F  H  F  N  Y  G  F  S  P  F  L  S  T  F  *  S  H  P  F  I  F  *  T  *  S  H  L  *  F  F  F  F  L  D  W  F  Y  S  F  S  F  I  F  F  K  K  F  I  Y   : *  G  Y  M  E  G  D  Q  F  Q  E  C  G  K  K  G  N  E  W  S  Y  *  S  *  D  V  W  A  A  H  *  R  I  G  K  C  L  E  Q  A  Q  R  R  R :   V  D  D  E  L  S  *  M  V  I  L  I  H  S  R  R  C  Q  M  G  Y  N  E  L  Y  F  K  R  R  N  R  E  D  V  *  L  I  V  K  L  Q  *  S  V  W  K  G  K  G  P  C  Y  Y  K  V  L  N  A  K  S  T  T  Y  *  Q  L  W  P  M  G  H  W  I  S  I  T  G  I  Y  F  S  F  L  V  P  Y  I  I  A  G  Y  Y  K  V  V  G  I  N  *  L  E  S  I  L  L  L  K  M  *  L  V  C  L  V  Q  I  Q  I  S  N  H  I  F  Y  I  L  N  L  S  N  F  R  G  *  S  S  Y  C  P  C  Y  *  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31100" stop="30876"/>
                    <exon start="30800" stop="30671"/>
                    <exon start="29536" stop="29508"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKASIFASSFDCLFFNPTMEATASFTSTMASHHFFPLSKATLSSSKLNPTCNSSSSWIGSTHSLSFSSRNSFTRDTWRVINSKNVVRREMSGVIRAEMFGQLTSGLENAWNKLKGEGWMMSCRRW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="36302" PGL_stop="34269"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36302" e_stop="36251"/>
            <exon e_start="35477" e_stop="35358"/>
            <exon e_start="35067" e_stop="34938"/>
            <exon e_start="34857" e_stop="34506"/>
            <exon e_start="34284" e_stop="34269"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="0.962"/>
          <exon-intron don_prob="0.889" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="0.991"/>
          <exon-only e_score="0.438"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="36302" e_stop="36251" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36250" i_stop="35478" i_length="773"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35477" e_stop="35358" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35357" i_stop="35068" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35067" e_stop="34938" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.963">
            <gDNA_intron_boundary i_start="34937" i_stop="34858" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="34857" e_stop="34506" e_length="352"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="34505" i_stop="34285" i_length="221"/>
          </intron>
          <exon e_serial="5" e_score="0.438">
            <gDNA_exon_boundary e_start="34284" e_stop="34269" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36302" stop="36251"/>
              <exon start="35477" stop="35358"/>
              <exon start="35067" stop="34938"/>
              <exon start="34857" stop="34506"/>
              <exon start="34284" stop="34269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716405" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAGATCCCTATATCCAGCAGCAGGAGTTTATAAAGTTATGGACGCTGAAG : GAGGCATATGTTAAAGCACTTGGGAAGGGTTTCTCATGTGCACCTTTCAAGACGTTTACCATTCGTCTTGGGAGCTCTACTGGAGAACAGTTTCATCCGTCTCAGAATTCAAGTGCTGAG : GCGAGTGAAATAGTAGTGGATTCTCTTGACAACACAGAGAACCTTACAAGTAATTGGCAATTTATGCTCCTGGAGTTTGCTAGTTCTCATTATGTTGCCATTTGCACCGAAAAGGATGTCAATACAAAAG : GTGATTGCGATAATAATCCATTGAAATTAACAGTTTGGAAGACAATTCCATTTGTCGAAGATAGTTGTGTCTCTGGAACAGACACAGTTCTTAAAGTTTGTGGCTTGAGATAATGATTATTACATCCGCGATGATACTTAATCTGAGAATCTATCATTATACATTAGAATCCTTGGATTCAGAGTAGCAACTTATATTGCATCCATCAATTTTATGCTGGGAAAACAGATTATACAAGTGAATGAATTCTCATTATTTTGCATTCTTGTCTGTAAGATGGCTAGTTTTCTTCATGATTGTAAACATTGCTTCTGTCACATATCTTTATTTTTTTTCCACGAGACGATGAAAA : CTCCAGTACATCAAAA</gDNA_template>
            <first_frame> W  R  S  L  Y  P  A  A  G  V  Y  K  V  M  D  A  E   : G  G  I  C  *  S  T  W  E  G  F  L  M  C  T  F  Q  D  V  Y  H  S  S  W  E  L  Y  W  R  T  V  S  S  V  S  E  F  K  C  *   : G  E  *  N  S  S  G  F  S  *  Q  H  R  E  P  Y  K  *  L  A  I  Y  A  P  G  V  C  *  F  S  L  C  C  H  L  H  R  K  G  C  Q  Y  K  R :   *  L  R  *  *  S  I  E  I  N  S  L  E  D  N  S  I  C  R  R  *  L  C  L  W  N  R  H  S  S  *  S  L  W  L  E  I  M  I  I  T  S  A  M  I  L  N  L  R  I  Y  H  Y  T  L  E  S  L  D  S  E  *  Q  L  I  L  H  P  S  I  L  C  W  E  N  R  L  Y  K  *  M  N  S  H  Y  F  A  F  L  S  V  R  W  L  V  F  F  M  I  V  N  I  A  S  V  T  Y  L  Y  F  F  S  T  R  R  *  K  :  L  Q  Y  I  K  </first_frame>
            <second_frame>  G  D  P  Y  I  Q  Q  Q  E  F  I  K  L  W  T  L  K  :  E  A  Y  V  K  A  L  G  K  G  F  S  C  A  P  F  K  T  F  T  I  R  L  G  S  S  T  G  E  Q  F  H  P  S  Q  N  S  S  A  E  :  A  S  E  I  V  V  D  S  L  D  N  T  E  N  L  T  S  N  W  Q  F  M  L  L  E  F  A  S  S  H  Y  V  A  I  C  T  E  K  D  V  N  T  K   : G  D  C  D  N  N  P  L  K  L  T  V  W  K  T  I  P  F  V  E  D  S  C  V  S  G  T  D  T  V  L  K  V  C  G  L  R  *  *  L  L  H  P  R  *  Y  L  I  *  E  S  I  I  I  H  *  N  P  W  I  Q  S  S  N  L  Y  C  I  H  Q  F  Y  A  G  K  T  D  Y  T  S  E  *  I  L  I  I  L  H  S  C  L  *  D  G  *  F  S  S  *  L  *  T  L  L  L  S  H  I  F  I  F  F  P  R  D  D  E  N :   S  S  T  S  K </second_frame>
            <third_frame>   E  I  P  I  S  S  S  R  S  L  *  S  Y  G  R  *  R :   R  H  M  L  K  H  L  G  R  V  S  H  V  H  L  S  R  R  L  P  F  V  L  G  A  L  L  E  N  S  F  I  R  L  R  I  Q  V  L  R :   R  V  K  *  *  W  I  L  L  T  T  Q  R  T  L  Q  V  I  G  N  L  C  S  W  S  L  L  V  L  I  M  L  P  F  A  P  K  R  M  S  I  Q  K  :  V  I  A  I  I  I  H  *  N  *  Q  F  G  R  Q  F  H  L  S  K  I  V  V  S  L  E  Q  T  Q  F  L  K  F  V  A  *  D  N  D  Y  Y  I  R  D  D  T  *  S  E  N  L  S  L  Y  I  R  I  L  G  F  R  V  A  T  Y  I  A  S  I  N  F  M  L  G  K  Q  I  I  Q  V  N  E  F  S  L  F  C  I  L  V  C  K  M  A  S  F  L  H  D  C  K  H  C  F  C  H  I  S  L  F  F  F  H  E  T  M  K   : T  P  V  H  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36301" stop="36251"/>
                    <exon start="35477" stop="35358"/>
                    <exon start="35067" stop="34938"/>
                    <exon start="34857" stop="34745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDPYIQQQEFIKLWTLKEAYVKALGKGFSCAPFKTFTIRLGSSTGEQFHPSQNSSAEASEIVVDSLDNTENLTSNWQFMLLEFASSHYVAICTEKDVNTKGDCDNNPLKLTVWKTIPFVEDSCVSGTDTVLKVCGLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34716" stop="34506"/>
                    <exon start="34284" stop="34271"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SENLSLYIRILGFRVATYIASINFMLGKQIIQVNEFSLFCILVCKMASFLHDCKHCFCHISLFFFHETMKTPVHQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44630" PGL_stop="39485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44630" e_stop="44572"/>
            <exon e_start="42992" e_stop="42872"/>
            <exon e_start="42732" e_stop="42613"/>
            <exon e_start="42097" e_stop="41867"/>
            <exon e_start="41587" e_stop="40702"/>
            <exon e_start="39512" e_stop="39485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44630" e_stop="44572" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44571" i_stop="42993" i_length="1579"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42992" e_stop="42872" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42871" i_stop="42733" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42732" e_stop="42613" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42612" i_stop="42098" i_length="515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42097" e_stop="41867" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="41866" i_stop="41588" i_length="279"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="41587" e_stop="40702" e_length="886"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40701" i_stop="39513" i_length="1189"/>
          </intron>
          <exon e_serial="6" e_score="0.571">
            <gDNA_exon_boundary e_start="39512" e_stop="39485" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44630" stop="44572"/>
              <exon start="42992" stop="42872"/>
              <exon start="42732" stop="42613"/>
              <exon start="42097" stop="41869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42644" stop="42613"/>
              <exon start="42097" stop="41867"/>
              <exon start="41587" stop="40967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42644" stop="42613"/>
              <exon start="42097" stop="41867"/>
              <exon start="41587" stop="41016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41891" stop="41867"/>
              <exon start="41587" stop="40855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41890" stop="41867"/>
              <exon start="41587" stop="41064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41455" stop="40702"/>
              <exon start="39512" stop="39485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540875" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTGGTCTTCCTGTTGAGTTTGAACCTGAAGTACCTAGAAGACCCCCAAGTGCCAG : TACAAGAGTCTTTGGAGTTTCGACAGATTGCATGCAGCTTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAG : GCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAG : GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAG : ATGGCAGATCCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTCCGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAGCCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAGATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCCCTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTTCTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACAAAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAAATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATGATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATCATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGCCTCAAGGGGCTATTGTTGCTACCTCATCAAGAAGTTAAATGGTTGTGATTTATGTTTGGAAAAAAAAGAAGAAGACAATGTATTATCCAGTTATGTTTGTGCTTGGATATTGGTTACTTTCTTAGTAGTTCAACAGGAATTCTGTCACCTTTCTCTCTAGTCATGTTTGGCTGGGGAAACTAGCAGGATGAATGTAATTTATGTTTTTTTTTTTTTAGAATGAATATTGTTTTGGTTTCCAATTTCAATATGATTTTCTTCAATTTGACATAAACAA : AAATAATAAAAAAGTGAAAAAGGAAAGG</gDNA_template>
            <first_frame> F  L  G  L  P  V  E  F  E  P  E  V  P  R  R  P  P  S  A  S :   T  R  V  F  G  V  S  T  D  C  M  Q  L  S  F  D  S  R  G  N  S  V  P  T  I  L  L  M  M  Q  G  R  L  Y  V  Q  G  G  L  Q  :  A  E  G  I  F  R  I  N  A  E  N  G  Q  E  E  F  V  R  E  Q  L  N  R  G  I  I  P  D  N  I  D  V  H  C  L  A  G  L  I  K  :  A  W  F  R  E  L  P  T  G  V  L  D  S  L  S  P  E  E  I  M  R  A  Q  S  E  E  E  C  V  R  L  V  R  L  L  P  P  T  E  A  A  L  L  D  W  A  I  N  L  M  A  D  V  A  Q  L  E  S  F  N  K  M  N  A  R  N  I  A  M  V  F  A  P  N  M  T  Q  :  M  A  D  P  L  T  A  L  M  Y  A  V  Q  V  M  N  F  L  K  T  L  I  L  R  T  L  K  D  R  E  E  T  V  V  E  A  G  P  A  P  E  L  E  P  F  D  E  N  G  H  H  S  A  S  Q  P  I  V  Q  K  S  N  E  I  E  E  D  I  L  I  S  K  E  R  P  S  S  G  A  A  N  S  A  L  R  E  I  I  V  E  N  K  S  H  G  L  P  C  T  I  E  N  V  L  Q  K  D  A  F  V  D  C  L  S  E  I  S  N  L  P  D  S  T  K  D  D  E  L  G  S  G  N  I  N  S  T  S  G  R  S  Q  P  K  I  R  R  T  K  S  V  H  S  S  S  S  S  L  K  G  S  K  K  M  I  E  W  P  I  G  H  I  S  G  S  L  E  K  G  K  G  V  R  I  I  D  R  L  N  S  T  T  E  R  V  E  A  W  R  *  T  T  S  R  L  K  G  L  L  L  L  P  H  Q  E  V  K  W  L  *  F  M  F  G  K  K  R  R  R  Q  C  I  I  Q  L  C  L  C  L  D  I  G  Y  F  L  S  S  S  T  G  I  L  S  P  F  S  L  V  M  F  G  W  G  N  *  Q  D  E  C  N  L  C  F  F  F  F  R  M  N  I  V  L  V  S  N  F  N  M  I  F  F  N  L  T  *  T   : K  I  I  K  K  *  K  R  K   </first_frame>
            <second_frame>  F  L  V  F  L  L  S  L  N  L  K  Y  L  E  D  P  Q  V  P   : V  Q  E  S  L  E  F  R  Q  I  A  C  S  F  H  L  T  L  E  E  I  V  S  P  Q  S  F  *  *  C  K  G  A  Y  T  F  K  V  A  C  R :   L  K  G  S  S  G  S  M  P  K  M  A  K  K  N  L  S  G  S  S  *  I  G  G  L  F  Q  I  T  L  T  S  I  A  *  Q  V  L  *  R :   L  G  S  E  S  C  Q  R  E  F  W  I  L  S  R  Q  R  K  L  C  V  L  N  R  K  K  S  V  C  G  S  *  D  F  F  L  Q  L  K  L  L  Y  *  I  G  L  L  T  *  W  L  M  L  L  N  W  K  V  L  T  K  *  M  H  V  I  S  L  W  C  L  L  Q  I  *  H  R :   W  Q  I  R  *  L  L  *  C  M  Q  F  K  L  *  T  F  S  K  L  L  F  S  G  L  *  K  T  E  K  K  L  L  *  K  L  V  L  H  Q  N  W  S  L  S  M  K  M  D  I  I  V  L  H  N  Q  *  F  R  S  L  T  R  S  R  R  I  S  L  Y  P  K  N  D  P  Q  V  A  L  L  I  L  P  S  E  R  *  *  L  R  I  N  P  M  D  Y  H  V  P  *  R  T  F  F  R  K  M  R  S  L  I  V  S  V  K  S  Q  T  Y  Q  T  A  Q  R  M  M  S  L  D  L  V  T  S  I  L  Q  V  E  E  V  N  Q  K  S  E  G  L  K  A  C  I  R  A  V  L  V  *  K  D  Q  R  K  *  L  N  G  Q  *  V  T  Y  L  V  V  *  R  R  A  K  E  S  E  S  S  I  G  *  I  R  Q  Q  K  G  W  K  H  G  D  E  Q  R  L  A  S  R  G  Y  C  C  Y  L  I  K  K  L  N  G  C  D  L  C  L  E  K  K  E  E  D  N  V  L  S  S  Y  V  C  A  W  I  L  V  T  F  L  V  V  Q  Q  E  F  C  H  L  S  L  *  S  C  L  A  G  E  T  S  R  M  N  V  I  Y  V  F  F  F  L  E  *  I  L  F  W  F  P  I  S  I  *  F  S  S  I  *  H  K  Q  :  K  *  *  K  S  E  K  G  K  </second_frame>
            <third_frame>   S  W  S  S  C  *  V  *  T  *  S  T  *  K  T  P  K  C  Q  :  Y  K  S  L  W  S  F  D  R  L  H  A  A  F  I  *  L  S  R  K  *  C  P  H  N  P  S  D  D  A  R  A  L  I  R  S  R  W  L  A   : G  *  R  D  L  Q  D  Q  C  R  K  W  P  R  R  I  C  Q  G  A  A  K  *  G  D  Y  S  R  *  H  *  R  P  L  L  S  R  S  Y  K   : G  L  V  Q  R  V  A  N  G  S  F  G  F  S  L  A  R  G  N  Y  A  C  S  I  G  R  R  V  C  A  A  R  E  T  S  S  S  N  *  S  C  S  I  R  L  G  Y  *  L  D  G  *  C  C  S  T  G  K  F  *  Q  N  E  C  T  *  Y  R  Y  G  V  C  S  K  Y  D  T   : D  G  R  S  V  D  C  F  D  V  C  S  S  S  Y  E  L  S  Q  N  S  Y  S  P  D  F  E  R  P  R  R  N  C  C  R  S  W  S  C  T  R  T  G  A  F  R  *  K  W  T  S  *  C  F  T  T  N  S  S  E  V  *  R  D  R  G  G  Y  P  Y  I  Q  R  T  T  L  K  W  R  C  *  F  C  P  Q  R  D  N  S  *  E  *  I  P  W  I  T  M  Y  H  R  E  R  S  S  E  R  C  V  R  *  L  S  Q  *  N  L  K  P  T  R  Q  H  K  G  *  *  A  W  I  W  *  H  Q  F  Y  K  W  K  K  S  T  K  N  P  K  D  *  K  R  A  F  E  Q  F  *  S  E  R  I  K  E  N  D  *  M  A  N  R  S  H  I  W  *  F  R  E  G  Q  R  S  Q  N  H  R  *  V  E  F  D  N  R  K  G  G  S  M  A  M  N  N  V  S  P  Q  G  A  I  V  A  T  S  S  R  S  *  M  V  V  I  Y  V  W  K  K  K  K  K  T  M  Y  Y  P  V  M  F  V  L  G  Y  W  L  L  S  *  *  F  N  R  N  S  V  T  F  L  S  S  H  V  W  L  G  K  L  A  G  *  M  *  F  M  F  F  F  F  *  N  E  Y  C  F  G  F  Q  F  Q  Y  D  F  L  Q  F  D  I  N  K :   N  N  K  K  V  K  K  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44630" stop="44572"/>
                    <exon start="42992" stop="42872"/>
                    <exon start="42732" stop="42613"/>
                    <exon start="42097" stop="41867"/>
                    <exon start="41587" stop="40991"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1125</number_coding_nucleotides>
                  <number_encoded_amino_acids>375</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLGLPVEFEPEVPRRPPSASTRVFGVSTDCMQLSFDSRGNSVPTILLMMQGRLYVQGGLQAEGIFRINAENGQEEFVREQLNRGIIPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEEIMRAQSEEECVRLVRLLPPTEAALLDWAINLMADVAQLESFNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLILRTLKDREETVVEAGPAPELEPFDENGHHSASQPIVQKSNEIEEDILISKERPSSGAANSALREIIVENKSHGLPCTIENVLQKDAFVDCLSEISNLPDSTKDDELGSGNINSTSGRSQPKIRRTKSVHSSSSSLKGSKKMIEWPIGHISGSLEKGKGVRIIDRLNSTTERVEAWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44630" e_stop="44572"/>
            <exon e_start="42992" e_stop="42872"/>
            <exon e_start="42732" e_stop="42613"/>
            <exon e_start="42097" e_stop="41750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44630" e_stop="44572" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.992">
            <gDNA_intron_boundary i_start="44571" i_stop="42993" i_length="1579"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42992" e_stop="42872" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42871" i_stop="42733" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42732" e_stop="42613" e_length="120"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="42612" i_stop="42098" i_length="515"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42097" e_stop="41750" e_length="348"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44630" stop="44572"/>
              <exon start="42992" stop="42872"/>
              <exon start="42732" stop="42613"/>
              <exon start="42097" stop="41869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42954" stop="42872"/>
              <exon start="42732" stop="42613"/>
              <exon start="42097" stop="41750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333964" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTTGGTCTTCCTGTTGAGTTTGAACCTGAAGTACCTAGAAGACCCCCAAGTGCCAG : TACAAGAGTCTTTGGAGTTTCGACAGATTGCATGCAGCTTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAG : GCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAG : GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTTGTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGTTACAGCTTGTT</gDNA_template>
            <first_frame> F  L  G  L  P  V  E  F  E  P  E  V  P  R  R  P  P  S  A  S :   T  R  V  F  G  V  S  T  D  C  M  Q  L  S  F  D  S  R  G  N  S  V  P  T  I  L  L  M  M  Q  G  R  L  Y  V  Q  G  G  L  Q  :  A  E  G  I  F  R  I  N  A  E  N  G  Q  E  E  F  V  R  E  Q  L  N  R  G  I  I  P  D  N  I  D  V  H  C  L  A  G  L  I  K  :  A  W  F  R  E  L  P  T  G  V  L  D  S  L  S  P  E  E  I  M  R  A  Q  S  E  E  E  C  V  R  L  V  R  L  L  P  P  T  E  A  A  L  L  D  W  A  I  N  L  M  A  D  V  A  Q  L  E  S  F  N  K  M  N  A  R  N  I  A  M  V  F  A  P  N  M  T  Q  V  S  Q  N  F  H  A  I  *  K  K  E  S  Y  C  C  S  Y  N  V  S  F  H  F  L  S  F  G  C  G  *  A  F  G  G  L  Q  L  V </first_frame>
            <second_frame>  F  L  V  F  L  L  S  L  N  L  K  Y  L  E  D  P  Q  V  P   : V  Q  E  S  L  E  F  R  Q  I  A  C  S  F  H  L  T  L  E  E  I  V  S  P  Q  S  F  *  *  C  K  G  A  Y  T  F  K  V  A  C  R :   L  K  G  S  S  G  S  M  P  K  M  A  K  K  N  L  S  G  S  S  *  I  G  G  L  F  Q  I  T  L  T  S  I  A  *  Q  V  L  *  R :   L  G  S  E  S  C  Q  R  E  F  W  I  L  S  R  Q  R  K  L  C  V  L  N  R  K  K  S  V  C  G  S  *  D  F  F  L  Q  L  K  L  L  Y  *  I  G  L  L  T  *  W  L  M  L  L  N  W  K  V  L  T  K  *  M  H  V  I  S  L  W  C  L  L  Q  I  *  H  R  *  V  K  T  F  M  Q  F  K  R  R  N  H  I  V  V  P  I  T  S  L  F  I  F  L  V  S  G  V  G  K  R  L  G  G  Y  S  L   </second_frame>
            <third_frame>   S  W  S  S  C  *  V  *  T  *  S  T  *  K  T  P  K  C  Q  :  Y  K  S  L  W  S  F  D  R  L  H  A  A  F  I  *  L  S  R  K  *  C  P  H  N  P  S  D  D  A  R  A  L  I  R  S  R  W  L  A   : G  *  R  D  L  Q  D  Q  C  R  K  W  P  R  R  I  C  Q  G  A  A  K  *  G  D  Y  S  R  *  H  *  R  P  L  L  S  R  S  Y  K   : G  L  V  Q  R  V  A  N  G  S  F  G  F  S  L  A  R  G  N  Y  A  C  S  I  G  R  R  V  C  A  A  R  E  T  S  S  S  N  *  S  C  S  I  R  L  G  Y  *  L  D  G  *  C  C  S  T  G  K  F  *  Q  N  E  C  T  *  Y  R  Y  G  V  C  S  K  Y  D  T  G  K  S  K  L  S  C  N  L  K  E  G  I  I  L  L  F  L  *  R  L  F  S  F  S  *  F  R  V  W  V  S  V  W  G  V  T  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44630" stop="44572"/>
                    <exon start="42992" stop="42872"/>
                    <exon start="42732" stop="42613"/>
                    <exon start="42097" stop="41840"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLGLPVEFEPEVPRRPPSASTRVFGVSTDCMQLSFDSRGNSVPTILLMMQGRLYVQGGLQAEGIFRINAENGQEEFVREQLNRGIIPDNIDVHCLAGLIKAWFRELPTGVLDSLSPEEIMRAQSEEECVRLVRLLPPTEAALLDWAINLMADVAQLESFNKMNARNIAMVFAPNMTQVSQNFHAI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="56108" PGL_stop="55887"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56108" e_stop="55887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="56108" e_stop="55887" e_length="222"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56108" stop="55887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCCTCCTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTTATGTATTTTAGCTTCTTAGATACTCTTAGATTAGTAATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGAAGAATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  L  H  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  L  L  M  S  *  C  L  E  V  P  A  W  T  S  F  L  C  I  L  A  S  *  I  L  L  D  *  *  F  E  D  R  C  S  C  D  D  D  F  Q  I  L  G  R  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  H  Y  I  G  F  Q  G  E  L  T  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  K  F  R  H  G  L  A  F  Y  V  F  *  L  L  R  Y  S  *  I  S  N  L  R  I  D  V  L  V  M  M  T  S  R  F  W  E  E  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   I  T  S  D  F  R  V  S  *  R  F  *  L  G  L  D  L  P  P  H  V  L  M  P  *  S  S  G  M  D  *  L  F  M  Y  F  S  F  L  D  T  L  R  L  V  I  *  G  *  M  F  L  *  *  *  L  P  D  F  G  K  N  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="65370" PGL_stop="60666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65370" e_stop="64556"/>
            <exon e_start="62729" e_stop="62561"/>
            <exon e_start="61194" e_stop="60666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.968" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="65370" e_stop="64556" e_length="815"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.968">
            <gDNA_intron_boundary i_start="64555" i_stop="62730" i_length="1826"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62729" e_stop="62561" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.975">
            <gDNA_intron_boundary i_start="62560" i_stop="61195" i_length="1366"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="61194" e_stop="60666" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65370" stop="64738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65362" stop="64895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65359" stop="64893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65348" stop="64958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65219" stop="64556"/>
              <exon start="62729" stop="62561"/>
              <exon start="61194" stop="61177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65040" stop="64556"/>
              <exon start="62729" stop="62561"/>
              <exon start="61194" stop="61160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64880" stop="64652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64880" stop="64662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64817" stop="64556"/>
              <exon start="62729" stop="62561"/>
              <exon start="61194" stop="61074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64653" stop="64556"/>
              <exon start="62729" stop="62561"/>
              <exon start="61194" stop="60752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61081" stop="60666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290904" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTCGGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAACAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTCACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAAATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCTCATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATTTTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCATCAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGGTGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGAAGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAATATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGAGTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGATTTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGCAGTTGAATAAACAAGAGACTGATCACATTCTTGAT : GGCTGTAAAACGAGAGGTATAAAACTGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGGAGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATCCAGTGCTTAGCCCTGATTTTCCAG : GCTTTTATCATTCTGCCATCCTCAACACGCATGACGTTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACGCCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGGCCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGTTTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACTTCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCAGGGACGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAATACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAACAAACACTATATTTTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGTTTGTTTTTGACATCAAAAGTT</gDNA_template>
            <first_frame> S  Q  *  W  L  S  K  E  A  P  P  Q  L  R  R  L  S  *  K  V  G  R  P  E  A  P  S  T  A  G  A  R  R  F  P  V  A  Q  V  *  Q  S  *  L  Y  S  C  Q  N  H  Q  T  F  H  F  S  K  M  P  F  T  N  S  K  I  P  I  L  S  S  N  L  N  S  I  T  N  Q  A  Q  I  P  T  L  T  S  F  P  P  L  L  I  F  K  S  S  R  S  I  S  H  Q  R  F  R  F  S  D  A  S  K  P  P  I  S  P  P  S  P  I  F  I  S  S  S  N  T  K  S  T  T  T  H  G  *  T  P  A  L  H  Q  I  P  T  R  I  S  S  S  P  A  F  I  N  *  K  T  K  N  R  C  S  L  *  G  F  I  H  R  C  V  I  G  R  L  H  W  R  C  *  R  S  Y  *  S  W  *  V  V  R  R  K  M  K  K  G  Q  N  W  K  Y  *  K  R  W  R  L  V  W  G  L  K  S  I  F  Q  M  V  K  R  V  N  H  F  G  R  V  G  L  I  W  W  G  M  V  *  I  H  *  D  F  V  I  *  S  L  W  I  R  N  Q  R  E  D  H  K  L  *  N  C  S  *  I  N  K  R  L  I  T  F  L  M :   A  V  K  R  E  V  *  N  C  V  D  Y  W  L  L  L  D  *  L  Q  L  I  P  *  K  A  *  R  R  I  N  G  R  S  M  Q  L  *  P  L  L  T  A  V  Q  F  L  I  Q  C  L  A  L  I  F  Q  :  A  F  I  I  L  P  S  S  T  R  M  T  L  R  E  E  M  T  Y  G  S  *  Q  R  E  V  T  H  L  L  S  T  P  R  T  I  T  S  I  S  Q  T  W  E  T  *  I  S  S  C  A  G  P  L  I  I  P  A  *  L  H  P  L  H  L  E  L  L  *  S  P  C  L  K  T  L  *  S  I  P  P  A  Q  C  I  K  K  S  D  *  K  T  S  S  G  V  H  P  C  M  G  *  A  L  L  L  P  Y  S  T  Q  S  G  T  D  I  W  I  V  H  V  F  I  P  S  P  C  I  L  E  S  K  Y  R  S  S  L  V  K  *  K  K  S  L  L  T  A  S  I  L  L  K  Q  T  L  Y  F  P  T  H  H  V  Q  *  K  C  S  K  L  F  V  F  D  I  K  S  </first_frame>
            <second_frame>  L  S  N  G  *  A  R  K  R  R  R  S  S  V  V  *  V  E  K  S  A  G  R  K  H  R  A  Q  L  V  Q  G  G  S  R  W  H  R  Y  N  S  L  S  S  T  L  V  K  T  T  R  H  F  T  S  P  K  C  P  S  Q  T  P  K  F  Q  S  Y  P  Q  I  S  T  P  L  R  I  K  H  K  F  L  L  L  H  H  S  L  H  F  S  S  S  N  P  A  V  R  S  L  I  N  G  S  D  S  P  T  P  Q  N  L  R  S  H  L  R  L  R  F  S  S  H  P  R  T  R  N  Q  P  Q  L  M  D  E  H  R  H  F  I  R  F  R  H  G  Y  L  L  R  Q  H  L  S  I  R  K  R  K  I  G  V  R  F  K  D  S  Y  I  G  V  *  S  G  G  C  I  G  G  A  E  E  V  I  E  A  G  E  L  *  E  G  R  *  R  R  D  R  I  G  N  I  E  K  D  G  G  W  F  G  D  *  R  V  Y  S  R  W  *  S  E  *  T  I  L  G  A  W  D  *  Y  G  G  V  W  F  E  F  I  E  I  L  *  F  E  V  Y  G  F  G  I  N  E  R  I  T  S  C  E  I  A  V  E  *  T  R  D  *  S  H  S  *   : W  L  *  N  E  R  Y  K  T  V  W  T  I  G  C  C  W  I  N  C  S  S  F  L  K  R  P  K  G  E  S  M  G  E  V  C  N  C  N  P  Y  *  L  P  F  N  S  *  S  S  A  *  P  *  F  S  R :   L  L  S  F  C  H  P  Q  H  A  *  R  *  G  R  R  *  L  M  G  A  S  K  E  K  L  H  I  F  Y  Q  R  Q  E  Q  *  Q  A  F  H  R  H  G  R  P  E  F  P  H  V  Q  G  H  *  *  S  R  L  N  S  I  L  F  T  *  N  F  S  D  L  R  V  *  R  H  C  D  R  Y  L  Q  H  N  A  S  R  N  R  I  R  R  L  H  R  V  C  I  R  A  W  G  R  P  F  Y  C  H  I  R  H  N  Q  G  R  T  F  G  L  C  M  C  L  S  L  P  L  A  Y  *  R  A  N  T  G  A  H  W  *  N  E  K  N  P  Y  *  L  L  V  Y  Y  *  N  K  H  Y  I  F  P  L  I  M  F  N  E  N  A  V  S  C  L  F  L  T  S  K  V </second_frame>
            <third_frame>   S  V  M  A  E  Q  G  S  A  A  A  A  P  S  S  E  L  K  S  R  P  A  G  S  T  E  H  S  W  C  K  A  V  P  G  G  T  G  I  T  V  L  A  L  L  L  S  K  P  P  D  I  S  L  L  Q  N  A  L  H  K  L  Q  N  S  N  P  I  L  K  S  Q  L  H  Y  E  S  S  T  N  S  Y  S  Y  I  I  P  S  T  S  H  L  Q  I  Q  P  F  D  L  S  S  T  V  Q  I  L  R  R  L  K  T  S  D  L  T  S  V  S  D  F  H  L  I  L  E  H  E  I  N  H  N  S  W  M  N  T  G  T  S  S  D  S  D  T  D  I  F  F  A  S  I  Y  Q  L  E  N  E  K  S  V  F  A  L  R  I  H  T  S  V  C  D  R  A  A  A  L  A  V  L  K  K  L  L  K  L  V  S  C  E  K  E  D  E  E  G  T  E  L  E  I  L  K  K  M  E  V  G  L  G  I  E  E  Y  I  P  D  G  K  A  S  K  P  F  W  A  R  G  I  D  M  V  G  Y  G  L  N  S  L  R  F  C  N  L  K  F  M  D  S  E  S  T  R  G  S  Q  V  V  K  L  Q  L  N  K  Q  E  T  D  H  I  L  D  :  G  C  K  T  R  G  I  K  L  C  G  L  L  A  A  A  G  L  I  A  A  H  S  L  K  G  L  K  E  N  Q  W  E  K  Y  A  I  V  T  L  I  N  C  R  S  I  L  D  P  V  L  S  P  D  F  P   : G  F  Y  H  S  A  I  L  N  T  H  D  V  K  G  G  D  D  L  W  E  L  A  K  R  S  Y  T  S  F  I  N  A  K  N  N  N  K  H  F  T  D  M  G  D  L  N  F  L  M  C  R  A  I  D  N  P  G  L  T  P  S  S  S  L  R  T  S  L  I  S  V  F  E  D  T  V  I  D  T  S  S  T  M  H  Q  E  I  G  L  E  D  F  I  G  C  A  S  V  H  G  V  G  P  S  I  A  I  F  D  T  I  R  D  G  H  L  D  C  A  C  V  Y  P  F  P  L  H  T  R  E  Q  I  Q  E  L  I  G  E  M  K  K  I  L  I  D  C  *  Y  I  T  K  T  N  T  I  F  S  H  S  S  C  S  M  K  M  Q  *  V  V  C  F  *  H  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65368" stop="64556"/>
                    <exon start="62729" stop="62561"/>
                    <exon start="61194" stop="60752"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1422</number_coding_nucleotides>
                  <number_encoded_amino_acids>474</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVMAEQGSAAAAPSSELKSRPAGSTEHSWCKAVPGGTGITVLALLLSKPPDISLLQNALHKLQNSNPILKSQLHYESSTNSYSYIIPSTSHLQIQPFDLSSTVQILRRLKTSDLTSVSDFHLILEHEINHNSWMNTGTSSDSDTDIFFASIYQLENEKSVFALRIHTSVCDRAAALAVLKKLLKLVSCEKEDEEGTELEILKKMEVGLGIEEYIPDGKASKPFWARGIDMVGYGLNSLRFCNLKFMDSESTRGSQVVKLQLNKQETDHILDGCKTRGIKLCGLLAAAGLIAAHSLKGLKENQWEKYAIVTLINCRSILDPVLSPDFPGFYHSAILNTHDVKGGDDLWELAKRSYTSFINAKNNNKHFTDMGDLNFLMCRAIDNPGLTPSSSLRTSLISVFEDTVIDTSSTMHQEIGLEDFIGCASVHGVGPSIAIFDTIRDGHLDCACVYPFPLHTREQIQELIGEMKKILIDC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="66994" PGL_stop="65372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66994" e_stop="66922"/>
            <exon e_start="66842" e_stop="66465"/>
            <exon e_start="65482" e_stop="65471"/>
            <exon e_start="65376" e_stop="65372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.956" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66994" e_stop="66922" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="66921" i_stop="66843" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="66842" e_stop="66465" e_length="378"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66464" i_stop="65483" i_length="982"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65482" e_stop="65471" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.989">
            <gDNA_intron_boundary i_start="65470" i_stop="65377" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="0.800">
            <gDNA_exon_boundary e_start="65376" e_stop="65372" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66994" stop="66922"/>
              <exon start="66842" stop="66465"/>
              <exon start="65482" stop="65471"/>
              <exon start="65376" stop="65372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264052" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCAGAATCATTGGGTAGATGTTCCTCCTACTCCCGGAGCTCTCGTGGTCAATATAGGAGATATTCTACAG : CTTATAACGAATGACAAGTTCAAAAGTGTTGATCATAGAGTACTGGCTAATAAGGTCGGTCCAAGGGTATCGTTGGCATGCTTCTTCATGACAAACTTTGTGGCAACACAAAGGCTGTATGGACCTATAAAGGAGCTGATATCGGAACAGAATCCTCCAAACTACAGGGAAACGACGATTAAGGAGTTCACAACTCATTTCAATAACAAAGGGCTGGATGGCACTTCCACTCTGTTGCATTTTAGACTTTAGACTAAATTGTTCAAATAAGGTTTTGTAATACTATATATGTCAAACTAAGTATGCTCATTATGTAACCATCAATAAATTCTACTCATAGTAAGTAATTTTCATGATTATGTTTAGATTCATCGCTAA : AAAAAAAAAAGA : CTAAT</gDNA_template>
            <first_frame> T  S  E  S  L  G  R  C  S  S  Y  S  R  S  S  R  G  Q  Y  R  R  Y  S  T   : A  Y  N  E  *  Q  V  Q  K  C  *  S  *  S  T  G  *  *  G  R  S  K  G  I  V  G  M  L  L  H  D  K  L  C  G  N  T  K  A  V  W  T  Y  K  G  A  D  I  G  T  E  S  S  K  L  Q  G  N  D  D  *  G  V  H  N  S  F  Q  *  Q  R  A  G  W  H  F  H  S  V  A  F  *  T  L  D  *  I  V  Q  I  R  F  C  N  T  I  Y  V  K  L  S  M  L  I  M  *  P  S  I  N  S  T  H  S  K  *  F  S  *  L  C  L  D  S  S  L   : K  K  K  K   : T  N </first_frame>
            <second_frame>  H  Q  N  H  W  V  D  V  P  P  T  P  G  A  L  V  V  N  I  G  D  I  L  Q  :  L  I  T  N  D  K  F  K  S  V  D  H  R  V  L  A  N  K  V  G  P  R  V  S  L  A  C  F  F  M  T  N  F  V  A  T  Q  R  L  Y  G  P  I  K  E  L  I  S  E  Q  N  P  P  N  Y  R  E  T  T  I  K  E  F  T  T  H  F  N  N  K  G  L  D  G  T  S  T  L  L  H  F  R  L  *  T  K  L  F  K  *  G  F  V  I  L  Y  M  S  N  *  V  C  S  L  C  N  H  Q  *  I  L  L  I  V  S  N  F  H  D  Y  V  *  I  H  R  *  :  K  K  K  R  :  L   </second_frame>
            <third_frame>   I  R  I  I  G  *  M  F  L  L  L  P  E  L  S  W  S  I  *  E  I  F  Y  S :   L  *  R  M  T  S  S  K  V  L  I  I  E  Y  W  L  I  R  S  V  Q  G  Y  R  W  H  A  S  S  *  Q  T  L  W  Q  H  K  G  C  M  D  L  *  R  S  *  Y  R  N  R  I  L  Q  T  T  G  K  R  R  L  R  S  S  Q  L  I  S  I  T  K  G  W  M  A  L  P  L  C  C  I  L  D  F  R  L  N  C  S  N  K  V  L  *  Y  Y  I  C  Q  T  K  Y  A  H  Y  V  T  I  N  K  F  Y  S  *  *  V  I  F  M  I  M  F  R  F  I  A  K :   K  K  K  D :   *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66993" stop="66922"/>
                    <exon start="66842" stop="66591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQNHWVDVPPTPGALVVNIGDILQLITNDKFKSVDHRVLANKVGPRVSLACFFMTNFVATQRLYGPIKELISEQNPPNYRETTIKEFTTHFNNKGLDGTSTLLHFRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67965" PGL_stop="67073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67965" e_stop="67398"/>
            <exon e_start="67243" e_stop="67073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67965" e_stop="67398" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="67397" i_stop="67244" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="67243" e_stop="67073" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67965" stop="67398"/>
              <exon start="67243" stop="67073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTACTTCAAATATCAGCTAAGAAAAAAATGGAGTTGATCAACACAACTGAAGTCCAGGTTCCAAGAGAAGCAAAGTATGACAGGAAGGCTGAACTACAAGCTTTTGATGAGACGAAAACCGGTGTTAAGGGACTAGTCGATACAGGTATCACTAAAGTACCAAGAATGTTTGTTCAACCGTCAAGGATTGAAGATTCAACAATTCACAGCAACAAGAAGTTCAGTTTTCCAATAATTGATCTTGATGGTATCAAGGAAAATTCGATCAAACGAAAGAACATAGTCCAGGAAGTCGGTCAAGCATCCGAGACTTGGGGATTCTTTCAAGTGATCAATCATGGGATTCCTAGTCATCTTCTGGAGGAAATGAAAGACGGTGTTCTCAGTTTCTTTGAACAAGATACCGAGGAGAAGAAACAGTGGTATACGCGAGATTTGACAAAAGTGTTTACGTTTAACAGCAATTTCGACCTGTTTGGAGCACCAGTAACCAACTGGAGAGACACTTTTACTGCTACCACAGCTCCTATACCTCCAAAACCTGAAGAATTACCTTCTGTTTGCAG : GGATGTTCTCCTTGAGTACACAAACCAAGTGATGAAATTAGGTGATACTCTATTTGAAATACTGGCTGAAGCTATTGGCCTCGAACCAAATCACCTCAAGGACATGGGTTGTGCCGAGGGGCTTATGGCGTTAGGCCATTATTATCCAGCATGCCCACAACCAGAACTAAC</gDNA_template>
            <first_frame> F  Y  F  K  Y  Q  L  R  K  K  W  S  *  S  T  Q  L  K  S  R  F  Q  E  K  Q  S  M  T  G  R  L  N  Y  K  L  L  M  R  R  K  P  V  L  R  D  *  S  I  Q  V  S  L  K  Y  Q  E  C  L  F  N  R  Q  G  L  K  I  Q  Q  F  T  A  T  R  S  S  V  F  Q  *  L  I  L  M  V  S  R  K  I  R  S  N  E  R  T  *  S  R  K  S  V  K  H  P  R  L  G  D  S  F  K  *  S  I  M  G  F  L  V  I  F  W  R  K  *  K  T  V  F  S  V  S  L  N  K  I  P  R  R  R  N  S  G  I  R  E  I  *  Q  K  C  L  R  L  T  A  I  S  T  C  L  E  H  Q  *  P  T  G  E  T  L  L  L  L  P  Q  L  L  Y  L  Q  N  L  K  N  Y  L  L  F  A   : G  M  F  S  L  S  T  Q  T  K  *  *  N  *  V  I  L  Y  L  K  Y  W  L  K  L  L  A  S  N  Q  I  T  S  R  T  W  V  V  P  R  G  L  W  R  *  A  I  I  I  Q  H  A  H  N  Q  N  *  </first_frame>
            <second_frame>  F  T  S  N  I  S  *  E  K  N  G  V  D  Q  H  N  *  S  P  G  S  K  R  S  K  V  *  Q  E  G  *  T  T  S  F  *  *  D  E  N  R  C  *  G  T  S  R  Y  R  Y  H  *  S  T  K  N  V  C  S  T  V  K  D  *  R  F  N  N  S  Q  Q  Q  E  V  Q  F  S  N  N  *  S  *  W  Y  Q  G  K  F  D  Q  T  K  E  H  S  P  G  S  R  S  S  I  R  D  L  G  I  L  S  S  D  Q  S  W  D  S  *  S  S  S  G  G  N  E  R  R  C  S  Q  F  L  *  T  R  Y  R  G  E  E  T  V  V  Y  A  R  F  D  K  S  V  Y  V  *  Q  Q  F  R  P  V  W  S  T  S  N  Q  L  E  R  H  F  Y  C  Y  H  S  S  Y  T  S  K  T  *  R  I  T  F  C  L  Q  :  G  C  S  P  *  V  H  K  P  S  D  E  I  R  *  Y  S  I  *  N  T  G  *  S  Y  W  P  R  T  K  S  P  Q  G  H  G  L  C  R  G  A  Y  G  V  R  P  L  L  S  S  M  P  T  T  R  T  N </second_frame>
            <third_frame>   L  L  Q  I  S  A  K  K  K  M  E  L  I  N  T  T  E  V  Q  V  P  R  E  A  K  Y  D  R  K  A  E  L  Q  A  F  D  E  T  K  T  G  V  K  G  L  V  D  T  G  I  T  K  V  P  R  M  F  V  Q  P  S  R  I  E  D  S  T  I  H  S  N  K  K  F  S  F  P  I  I  D  L  D  G  I  K  E  N  S  I  K  R  K  N  I  V  Q  E  V  G  Q  A  S  E  T  W  G  F  F  Q  V  I  N  H  G  I  P  S  H  L  L  E  E  M  K  D  G  V  L  S  F  F  E  Q  D  T  E  E  K  K  Q  W  Y  T  R  D  L  T  K  V  F  T  F  N  S  N  F  D  L  F  G  A  P  V  T  N  W  R  D  T  F  T  A  T  T  A  P  I  P  P  K  P  E  E  L  P  S  V  C  R :   D  V  L  L  E  Y  T  N  Q  V  M  K  L  G  D  T  L  F  E  I  L  A  E  A  I  G  L  E  P  N  H  L  K  D  M  G  C  A  E  G  L  M  A  L  G  H  Y  Y  P  A  C  P  Q  P  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67963" stop="67398"/>
                    <exon start="67243" stop="67075"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQISAKKKMELINTTEVQVPREAKYDRKAELQAFDETKTGVKGLVDTGITKVPRMFVQPSRIEDSTIHSNKKFSFPIIDLDGIKENSIKRKNIVQEVGQASETWGFFQVINHGIPSHLLEEMKDGVLSFFEQDTEEKKQWYTRDLTKVFTFNSNFDLFGAPVTNWRDTFTATTAPIPPKPEELPSVCRDVLLEYTNQVMKLGDTLFEILAEAIGLEPNHLKDMGCAEGLMALGHYYPACPQPEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71931" PGL_stop="69789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71931" e_stop="71297"/>
            <exon e_start="70964" e_stop="70643"/>
            <exon e_start="70001" e_stop="69789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.652" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71931" e_stop="71297" e_length="635"/>
          </exon>
          <intron i_serial="1" don_prob="0.652" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71296" i_stop="70965" i_length="332"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70964" e_stop="70643" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="70642" i_stop="70002" i_length="641"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="70001" e_stop="69789" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71931" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71920" stop="71434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71795" stop="71297"/>
              <exon start="70964" stop="70946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71746" stop="71297"/>
              <exon start="70964" stop="70643"/>
              <exon start="70001" stop="69967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71627" stop="71297"/>
              <exon start="70964" stop="70643"/>
              <exon start="70001" stop="69789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGTTGGTGTCTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACATCACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATCAAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG : GGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAG : TTAATATCAAATGACAAGTTTAAAAGCGTTGAACATCGTGTACTGGCAAATCGTGTTGGTCCAAGGATATCGATAGCATGCTTCTTCTCCACATTTTTTCTAGAAGCGTCAAGACTTTATGGTCCTATTAAGGAGTTGTTATCAGAAGAAAATCCGTCAAAATACAGAGAAACAACAATTCAGGAATATGCTGCCTATTTTACTGCAAAGGGA</gDNA_template>
            <first_frame> S  V  G  V  C  S  D  G  R  *  H  L  V  D  A  S  *  P  R  H  H  F  C  *  R  E  E  Y  Y  I  L  L  M  N  N  R  T  R  Y  I  K  K  M  D  T  N  E  S  K  H  D  R  K  S  E  L  K  A  F  D  D  T  K  S  G  V  K  G  L  V  D  A  G  V  S  K  V  P  Q  I  F  I  S  P  P  D  T  Y  S  N  S  N  T  G  Q  F  I  F  P  V  I  D  L  Q  D  M  D  S  H  D  Q  I  N  R  K  K  V  I  E  K  V  R  D  A  S  E  T  W  G  F  F  Q  V  I  N  H  G  V  P  C  D  V  M  E  E  M  I  R  G  V  C  S  F  H  E  Q  D  T  D  I  K  K  Q  W  Y  T  R  E  L  T  K  R  V  V  Y  N  S  N  F  D  L  Y  N  A  P  A  T  N  W  R  D  T  F  F  C  I  M  A  P  N  P  P  S  P  E  E  L  P  P  I  C  R :   D  I  I  V  K  Y  S  E  E  V  K  K  L  G  R  S  L  F  E  L  L  A  E  A  L  G  L  N  R  N  Y  L  N  E  M  D  C  G  E  G  L  S  V  V  C  H  Y  Y  P  A  C  P  E  P  E  L  T  L  G  A  S  K  H  A  D  D  G  F  L  T  L  L  L  Q  D  H  I  G  G  L  Q  V  L  H  R  N  H  W  V  D  V  P  P  T  P  G  A  L  V  V  N  I  A  D  L  L  Q  :  L  I  S  N  D  K  F  K  S  V  E  H  R  V  L  A  N  R  V  G  P  R  I  S  I  A  C  F  F  S  T  F  F  L  E  A  S  R  L  Y  G  P  I  K  E  L  L  S  E  E  N  P  S  K  Y  R  E  T  T  I  Q  E  Y  A  A  Y  F  T  A  K  G </first_frame>
            <second_frame>  R  L  V  S  V  L  M  G  G  N  I  *  W  T  Q  A  N  R  D  I  T  F  V  K  G  K  S  T  I  S  Y  *  *  I  I  E  Q  D  I  S  R  K  W  I  Q  M  N  Q  N  M  I  E  K  V  S  *  K  P  L  M  T  Q  N  L  V  S  K  D  L  L  M  Q  E  *  V  K  S  L  R  Y  S  F  H  L  Q  I  H  T  Q  I  P  T  Q  D  S  S  F  F  Q  L  *  T  S  K  I  W  I  V  T  I  K  S  I  E  K  K  S  L  R  K  S  A  M  H  Q  R  H  G  V  S  F  K  *  S  I  M  A  F  R  V  M  L  W  K  K  *  Y  E  V  F  V  V  F  M  N  K  I  L  I  S  R  S  N  G  I  R  E  S  *  L  K  E  *  F  I  T  V  T  L  I  C  I  M  H  Q  Q  L  I  G  G  I  L  F  S  A  L  W  L  L  I  L  L  V  L  K  N  C  L  Q  S  V   : G  I  S  L  L  N  T  L  R  K  *  R  N  S  G  V  L  C  L  N  Y  *  Q  K  H  L  D  S  I  E  T  I  *  M  K  W  I  V  V  K  D  F  Q  L  Y  V  T  I  I  Q  L  V  Q  N  Q  N  *  H  *  V  L  V  N  T  L  M  M  D  S  *  L  C  F  F  K  T  I  *  G  D  C  K  F  F  I  E  I  I  G  L  M  S  L  L  P  L  V  L  L  L  *  I  L  Q  I  F  C  S :   *  Y  Q  M  T  S  L  K  A  L  N  I  V  Y  W  Q  I  V  L  V  Q  G  Y  R  *  H  A  S  S  P  H  F  F  *  K  R  Q  D  F  M  V  L  L  R  S  C  Y  Q  K  K  I  R  Q  N  T  E  K  Q  Q  F  R  N  M  L  P  I  L  L  Q  R   </second_frame>
            <third_frame>   G  W  C  L  F  *  W  E  V  T  F  S  G  R  K  L  T  E  T  S  L  L  L  K  G  R  V  L  Y  P  I  D  E  *  *  N  K  I  Y  Q  E  N  G  Y  K  *  I  K  T  *  *  K  K  *  V  K  S  L  *  *  H  K  I  W  C  Q  R  T  C  *  C  R  S  K  *  S  P  S  D  I  H  F  T  S  R  Y  I  L  K  F  Q  H  R  T  V  H  F  S  S  Y  R  P  P  R  Y  G  *  S  R  S  N  Q  S  K  K  S  H  *  E  S  P  R  C  I  R  D  M  G  F  L  S  S  D  Q  S  W  R  S  V  *  C  Y  G  R  N  D  T  R  C  L  *  F  S  *  T  R  Y  *  Y  Q  E  A  M  V  Y  A  R  V  D  *  K  S  S  L  *  Q  *  L  *  F  V  *  C  T  S  N  *  L  E  G  Y  F  F  L  H  Y  G  S  *  S  S  *  S  *  R  I  A  S  N  L  *  :  G  Y  H  C  *  I  L  *  G  S  E  E  T  R  A  F  F  V  *  T  I  S  R  S  T  W  T  Q  *  K  L  S  E  *  N  G  L  W  *  R  T  F  S  C  M  S  L  L  S  S  L  S  R  T  R  T  N  I  R  C  *  *  T  R  *  *  W  I  L  D  F  A  S  S  R  P  Y  R  G  I  A  S  S  S  S  K  S  L  G  *  C  P  S  Y  P  W  C  S  C  C  K  Y  C  R  S  S  A   : V  N  I  K  *  Q  V  *  K  R  *  T  S  C  T  G  K  S  C  W  S  K  D  I  D  S  M  L  L  L  H  I  F  S  R  S  V  K  T  L  W  S  Y  *  G  V  V  I  R  R  K  S  V  K  I  Q  R  N  N  N  S  G  I  C  C  L  F  Y  C  K  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71859" stop="71297"/>
                    <exon start="70964" stop="70643"/>
                    <exon start="70001" stop="69789"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REEYYILLMNNRTRYIKKMDTNESKHDRKSELKAFDDTKSGVKGLVDAGVSKVPQIFISPPDTYSNSNTGQFIFPVIDLQDMDSHDQINRKKVIEKVRDASETWGFFQVINHGVPCDVMEEMIRGVCSFHEQDTDIKKQWYTRELTKRVVYNSNFDLYNAPATNWRDTFFCIMAPNPPSPEELPPICRDIIVKYSEEVKKLGRSLFELLAEALGLNRNYLNEMDCGEGLSVVCHYYPACPEPELTLGASKHADDGFLTLLLQDHIGGLQVLHRNHWVDVPPTPGALVVNIADLLQLISNDKFKSVEHRVLANRVGPRISIACFFSTFFLEASRLYGPIKELLSEENPSKYRETTIQEYAAYFTAKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71931" e_stop="71297"/>
            <exon e_start="70964" e_stop="70613"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.652" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71931" e_stop="71297" e_length="635"/>
          </exon>
          <intron i_serial="1" don_prob="0.652" acc_prob="0.981">
            <gDNA_intron_boundary i_start="71296" i_stop="70965" i_length="332"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70964" e_stop="70613" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71931" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71920" stop="71434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71796" stop="71297"/>
              <exon start="70964" stop="70613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71795" stop="71297"/>
              <exon start="70964" stop="70946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308685" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGGTTGGTGTCTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACATCACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATCAAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGATGACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATATTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTTATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAAGTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGTGATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATCAAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGATTTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAATCCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG : GGATATCATTGTTAAATACTCTGAGGAAGTGAAGAAACTCGGGCGTTCTTTGTTTGAACTATTAGCAGAAGCACTTGGACTCAATAGAAACTATCTGAATGAAATGGATTGTGGTGAAGGACTTTCAGTTGTATGTCACTATTATCCAGCTTGTCCAGAACCAGAACTAACATTAGGTGCTAGTAAACACGCTGATGATGGATTCTTGACTTTGCTTCTTCAAGACCATATAGGGGGATTGCAAGTTCTTCATCGAAATCATTGGGTTGATGTCCCTCCTACCCCTGGTGCTCTTGTTGTAAATATTGCAGATCTTCTGCAGGTATGTCTTCTCACCTATCTGTACTGAAAA</gDNA_template>
            <first_frame> S  V  G  V  C  S  D  G  R  *  H  L  V  D  A  S  *  P  R  H  H  F  C  *  R  E  E  Y  Y  I  L  L  M  N  N  R  T  R  Y  I  K  K  M  D  T  N  E  S  K  H  D  R  K  S  E  L  K  A  F  D  D  T  K  S  G  V  K  G  L  V  D  A  G  V  S  K  V  P  Q  I  F  I  S  P  P  D  T  Y  S  N  S  N  T  G  Q  F  I  F  P  V  I  D  L  Q  D  M  D  S  H  D  Q  I  N  R  K  K  V  I  E  K  V  R  D  A  S  E  T  W  G  F  F  Q  V  I  N  H  G  V  P  C  D  V  M  E  E  M  I  R  G  V  C  S  F  H  E  Q  D  T  D  I  K  K  Q  W  Y  T  R  E  L  T  K  R  V  V  Y  N  S  N  F  D  L  Y  N  A  P  A  T  N  W  R  D  T  F  F  C  I  M  A  P  N  P  P  S  P  E  E  L  P  P  I  C  R :   D  I  I  V  K  Y  S  E  E  V  K  K  L  G  R  S  L  F  E  L  L  A  E  A  L  G  L  N  R  N  Y  L  N  E  M  D  C  G  E  G  L  S  V  V  C  H  Y  Y  P  A  C  P  E  P  E  L  T  L  G  A  S  K  H  A  D  D  G  F  L  T  L  L  L  Q  D  H  I  G  G  L  Q  V  L  H  R  N  H  W  V  D  V  P  P  T  P  G  A  L  V  V  N  I  A  D  L  L  Q  V  C  L  L  T  Y  L  Y  *  K </first_frame>
            <second_frame>  R  L  V  S  V  L  M  G  G  N  I  *  W  T  Q  A  N  R  D  I  T  F  V  K  G  K  S  T  I  S  Y  *  *  I  I  E  Q  D  I  S  R  K  W  I  Q  M  N  Q  N  M  I  E  K  V  S  *  K  P  L  M  T  Q  N  L  V  S  K  D  L  L  M  Q  E  *  V  K  S  L  R  Y  S  F  H  L  Q  I  H  T  Q  I  P  T  Q  D  S  S  F  F  Q  L  *  T  S  K  I  W  I  V  T  I  K  S  I  E  K  K  S  L  R  K  S  A  M  H  Q  R  H  G  V  S  F  K  *  S  I  M  A  F  R  V  M  L  W  K  K  *  Y  E  V  F  V  V  F  M  N  K  I  L  I  S  R  S  N  G  I  R  E  S  *  L  K  E  *  F  I  T  V  T  L  I  C  I  M  H  Q  Q  L  I  G  G  I  L  F  S  A  L  W  L  L  I  L  L  V  L  K  N  C  L  Q  S  V   : G  I  S  L  L  N  T  L  R  K  *  R  N  S  G  V  L  C  L  N  Y  *  Q  K  H  L  D  S  I  E  T  I  *  M  K  W  I  V  V  K  D  F  Q  L  Y  V  T  I  I  Q  L  V  Q  N  Q  N  *  H  *  V  L  V  N  T  L  M  M  D  S  *  L  C  F  F  K  T  I  *  G  D  C  K  F  F  I  E  I  I  G  L  M  S  L  L  P  L  V  L  L  L  *  I  L  Q  I  F  C  R  Y  V  F  S  P  I  C  T  E   </second_frame>
            <third_frame>   G  W  C  L  F  *  W  E  V  T  F  S  G  R  K  L  T  E  T  S  L  L  L  K  G  R  V  L  Y  P  I  D  E  *  *  N  K  I  Y  Q  E  N  G  Y  K  *  I  K  T  *  *  K  K  *  V  K  S  L  *  *  H  K  I  W  C  Q  R  T  C  *  C  R  S  K  *  S  P  S  D  I  H  F  T  S  R  Y  I  L  K  F  Q  H  R  T  V  H  F  S  S  Y  R  P  P  R  Y  G  *  S  R  S  N  Q  S  K  K  S  H  *  E  S  P  R  C  I  R  D  M  G  F  L  S  S  D  Q  S  W  R  S  V  *  C  Y  G  R  N  D  T  R  C  L  *  F  S  *  T  R  Y  *  Y  Q  E  A  M  V  Y  A  R  V  D  *  K  S  S  L  *  Q  *  L  *  F  V  *  C  T  S  N  *  L  E  G  Y  F  F  L  H  Y  G  S  *  S  S  *  S  *  R  I  A  S  N  L  *  :  G  Y  H  C  *  I  L  *  G  S  E  E  T  R  A  F  F  V  *  T  I  S  R  S  T  W  T  Q  *  K  L  S  E  *  N  G  L  W  *  R  T  F  S  C  M  S  L  L  S  S  L  S  R  T  R  T  N  I  R  C  *  *  T  R  *  *  W  I  L  D  F  A  S  S  R  P  Y  R  G  I  A  S  S  S  S  K  S  L  G  *  C  P  S  Y  P  W  C  S  C  C  K  Y  C  R  S  S  A  G  M  S  S  H  L  S  V  L  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71859" stop="71297"/>
                    <exon start="70964" stop="70616"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REEYYILLMNNRTRYIKKMDTNESKHDRKSELKAFDDTKSGVKGLVDAGVSKVPQIFISPPDTYSNSNTGQFIFPVIDLQDMDSHDQINRKKVIEKVRDASETWGFFQVINHGVPCDVMEEMIRGVCSFHEQDTDIKKQWYTRELTKRVVYNSNFDLYNAPATNWRDTFFCIMAPNPPSPEELPPICRDIIVKYSEEVKKLGRSLFELLAEALGLNRNYLNEMDCGEGLSVVCHYYPACPEPELTLGASKHADDGFLTLLLQDHIGGLQVLHRNHWVDVPPTPGALVVNIADLLQVCLLTYLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="71434" PGL_stop="71920"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71434" e_stop="71920"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="71434" e_stop="71920" e_length="487"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71434" stop="71920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293584" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTATACCATTGCTTCTTGATATCAGTATCTTGTTCATGAAAACTACAAACACCTCGTATCATTTCTTCCATAACATCACACGGAACGCCATGATTGATCACTTGAAAGAAACCCCATGTCTCTGATGCATCGCGGACTTTCTCAATGACTTTTTTTCGATTGATTTGATCGTGACTATCCATATCTTGGAGGTCTATAACTGGAAAAATGAACTGTCCTGTGTTGGAATTTGAGTATGTATCTGGAGGTGAAATGAATATCTGAGGGACTTTACTTACTCCTGCATCAACAAGTCCTTTGACACCAGATTTTGTGTCATCAAAGGCTTTTAACTCACTTTTTCTATCATGTTTTGATTCATTTGTATCCATTTTCTTGATATATCTTGTTCTATTATTCATCAATAGGATATAGTACTCTTCCCTTTAACAAAAGTGATGTCTCGGTTAGCTTGCGTCCACTAAATGTTACCTCCCATCAGAACAG</gDNA_template>
            <first_frame> R  I  P  L  L  L  D  I  S  I  L  F  M  K  T  T  N  T  S  Y  H  F  F  H  N  I  T  R  N  A  M  I  D  H  L  K  E  T  P  C  L  *  C  I  A  D  F  L  N  D  F  F  S  I  D  L  I  V  T  I  H  I  L  E  V  Y  N  W  K  N  E  L  S  C  V  G  I  *  V  C  I  W  R  *  N  E  Y  L  R  D  F  T  Y  S  C  I  N  K  S  F  D  T  R  F  C  V  I  K  G  F  *  L  T  F  S  I  M  F  *  F  I  C  I  H  F  L  D  I  S  C  S  I  I  H  Q  *  D  I  V  L  F  P  L  T  K  V  M  S  R  L  A  C  V  H  *  M  L  P  P  I  R  T  </first_frame>
            <second_frame>  V  Y  H  C  F  L  I  S  V  S  C  S  *  K  L  Q  T  P  R  I  I  S  S  I  T  S  H  G  T  P  *  L  I  T  *  K  K  P  H  V  S  D  A  S  R  T  F  S  M  T  F  F  R  L  I  *  S  *  L  S  I  S  W  R  S  I  T  G  K  M  N  C  P  V  L  E  F  E  Y  V  S  G  G  E  M  N  I  *  G  T  L  L  T  P  A  S  T  S  P  L  T  P  D  F  V  S  S  K  A  F  N  S  L  F  L  S  C  F  D  S  F  V  S  I  F  L  I  Y  L  V  L  L  F  I  N  R  I  *  Y  S  S  L  *  Q  K  *  C  L  G  *  L  A  S  T  K  C  Y  L  P  S  E  Q </second_frame>
            <third_frame>   Y  T  I  A  S  *  Y  Q  Y  L  V  H  E  N  Y  K  H  L  V  S  F  L  P  *  H  H  T  E  R  H  D  *  S  L  E  R  N  P  M  S  L  M  H  R  G  L  S  Q  *  L  F  F  D  *  F  D  R  D  Y  P  Y  L  G  G  L  *  L  E  K  *  T  V  L  C  W  N  L  S  M  Y  L  E  V  K  *  I  S  E  G  L  Y  L  L  L  H  Q  Q  V  L  *  H  Q  I  L  C  H  Q  R  L  L  T  H  F  F  Y  H  V  L  I  H  L  Y  P  F  S  *  Y  I  L  F  Y  Y  S  S  I  G  Y  S  T  L  P  F  N  K  S  D  V  S  V  S  L  R  P  L  N  V  T  S  H  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="72782" PGL_stop="74766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72799" e_stop="72899"/>
            <exon e_start="73764" e_stop="74766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.604" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72799" e_stop="72899" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.604" acc_prob="0.989">
            <gDNA_intron_boundary i_start="72900" i_stop="73763" i_length="864"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="73764" e_stop="74766" e_length="1003"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72799" stop="72899"/>
              <exon start="73764" stop="73944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72817" stop="72899"/>
              <exon start="73764" stop="74321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73802" stop="74514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73802" stop="74458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73802" stop="74326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73802" stop="74303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73802" stop="74201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73844" stop="74238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74008" stop="74583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74008" stop="74413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74117" stop="74727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74279" stop="74766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74314" stop="74722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTG : GCAGGAGTGAGTGTAAAGCACAAGTTTTACCAAGTGGTTGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGATCAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCATAGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCAGTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTACAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGTTCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTTACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTTGGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAAAACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAAAGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGTTCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGATCAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGGTTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTTCTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGTGCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCTAGACTGTTAAGAATTCGAAATAATCTCGTGGAATTAATTTAGGTGCACTTGAGCTTGCCCCTAACA</gDNA_template>
            <first_frame> T  A  L  A  G  I  S  H  G  G  D  L  F  L  R  R  I  *  S  P  K  S  L  H  L  Y  L  Q  F  T  N  S  L  W :   Q  E  *  V  *  S  T  S  F  T  K  W  L  K  W  K  L  S  E  F  F  C  I  S  T  T  R  V  *  N  S  D  Q  A  N  I  I  C  N  S  L  L  G  K  *  Y  L  K  H  E  A  H  S  T  V  K  T  H  P  N  L  Y  S  S  S  *  N  Y  R  A  S  A  V  S  F  V  S  T  *  F  C  S  Q  R  S  *  C  Q  A  H  K  V  Q  I  S  C  C  L  *  S  I  W  P  E  T  P  T  I  R  Q  D  S  S  A  C  *  T  Y  C  C  F  S  P  R  R  T  *  T  N  W  S  F  T  Q  G  D  T  K  A  P  Y  F  E  T  N  F  S  R  R  H  G  F  G  C  N  G  R  S  R  W  W  T  G  K  G  *  G  E  E  G  *  E  N  S  I  *  R  E  V  R  E  I  *  C  S  C  E  N  Q  G  D  Q  R  G  *  I  L  H  E  S  R  S  E  G  S  Q  G  P  C  R  K  G  S  C  Y  T  *  A  R  S  N  Q  R  G  S  *  *  N  N  R  K  D  Q  S  C  W  R  S  R  R  Y  G  V  T  T  I  S  V  G  F  S  R  F  P  H  P  A  F  L  L  F  S  Q  R  N  M  P  K  L  T  *  F  L  F  V  G  F  S  F  L  G  *  D  D  H  V  L  F  N  R  F  R  A  F  Y  S  F  E  *  A  C  *  L  Q  Y  F  V  S  D  L  A  A  R  L  L  R  I  R  N  N  L  V  E  L  I  *  V  H  L  S  L  P  L  T </first_frame>
            <second_frame>  L  H  S  P  E  S  L  T  A  A  I  S  F  S  G  G  F  K  V  L  S  L  F  I  Y  I  F  N  S  R  I  P  F   : G  R  S  E  C  K  A  Q  V  L  P  S  G  *  S  G  N  Y  P  S  S  F  A  L  A  Q  H  A  Y  E  I  L  I  K  L  T  S  F  A  I  H  C  L  E  S  D  I  L  S  M  K  L  I  A  R  L  R  P  I  Q  T  C  T  A  L  R  E  I  I  G  P  L  Q  S  R  S  F  Q  P  D  F  V  P  R  D  P  N  V  K  P  I  R  Y  K  Y  P  A  A  Y  D  P  Y  G  P  R  P  P  P  S  D  K  I  V  Q  L  A  E  R  I  A  A  L  A  P  E  E  R  R  Q  I  G  P  L  L  R  E  I  L  R  H  P  T  L  K  P  I  S  V  E  G  M  D  L  G  A  M  G  G  A  G  G  G  P  A  K  A  E  E  K  K  V  E  K  T  A  F  D  V  K  L  E  K  F  D  A  A  A  K  I  K  V  I  K  E  V  R  S  F  T  S  L  G  L  K  E  A  K  D  L  V  E  K  V  P  A  I  L  K  Q  G  V  T  K  E  E  A  N  E  I  I  E  K  I  K  A  V  G  G  V  A  V  M  E  *  Q  Q  S  L  L  D  L  A  G  S  L  I  L  H  F  F  F  F  H  N  G  T  C  Q  N  *  H  N  F  S  L  L  D  L  V  S  W  V  R  T  I  T  F  C  L  I  G  F  V  L  F  T  A  L  N  R  H  V  D  Y  N  I  L  Y  L  I  L  L  L  D  C  *  E  F  E  I  I  S  W  N  *  F  R  C  T  *  A  C  P  *   </second_frame>
            <third_frame>   C  T  R  R  N  L  S  R  R  R  S  L  S  P  E  D  L  K  S  *  V  S  S  F  I  S  S  I  H  E  F  P  L  :  A  G  V  S  V  K  H  K  F  Y  Q  V  V  E  V  E  I  I  R  V  L  L  H  *  H  N  T  R  M  K  F  *  S  S  *  H  H  L  Q  F  I  A  W  K  V  I  S  *  A  *  S  S  *  H  G  *  D  P  S  K  P  V  Q  L  F  V  K  L  *  G  L  C  S  L  V  R  F  N  L  I  L  F  P  E  I  L  M  S  S  P  *  G  T  N  I  L  L  P  M  I  H  M  A  R  D  P  H  H  Q  T  R  *  F  S  L  L  N  V  L  L  L  *  P  Q  K  N  V  D  K  L  V  L  Y  S  G  R  Y  *  G  T  L  L  *  N  Q  F  Q  *  K  A  W  I  W  V  Q  W  E  E  Q  V  V  D  R  Q  R  L  R  R  R  R  L  R  K  Q  H  L  T  *  S  *  R  N  L  M  Q  L  R  K  S  R  *  S  K  R  L  D  P  S  R  V  *  V  *  R  K  P  R  T  L  S  K  R  F  L  L  Y  L  S  K  E  *  P  K  R  K  L  M  K  *  *  K  R  S  K  L  L  E  E  S  P  L  W  S  N  N  N  L  C  W  I  *  Q  V  P  S  S  C  I  S  S  F  F  T  T  E  H  A  K  I  N  I  I  S  L  C  W  I  *  F  L  G  L  G  R  S  R  F  V  *  *  V  S  C  F  L  Q  L  *  I  G  M  L  I  T  I  F  C  I  *  S  C  C  *  T  V  K  N  S  K  *  S  R  G  I  N  L  G  A  L  E  L  A  P  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73805" stop="74494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGNYPSSFALAQHAYEILIKLTSFAIHCLESDILSMKLIARLRPIQTCTALREIIGPLQSRSFQPDFVPRDPNVKPIRYKYPAAYDPYGPRPPPSDKIVQLAERIAALAPEERRQIGPLLREILRHPTLKPISVEGMDLGAMGGAGGGPAKAEEKKVEKTAFDVKLEKFDAAAKIKVIKEVRSFTSLGLKEAKDLVEKVPAILKQGVTKEEANEIIEKIKAVGGVAVME*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72782" e_stop="73425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="72782" e_stop="73425" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72782" stop="73425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72782" stop="73287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCGGCCAGTTCACACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTTCATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGGATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTACGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATAAGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAATCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAACTGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGCAGTTAGTACATTATCTGGAATTGATTGTTTTCGTCTTTGCAGTCTGCTGCAATAGCATCAAAGGATACTTCTGTGCTTCCTTTGATAGATGAACAACTAGTTTTCCTCGTAAAAATGATGTAAAGGTTTAATTTGAATTCAGTTTCATTCGTTCATT</gDNA_template>
            <first_frame> F  F  G  Q  F  T  L  H  S  P  E  S  L  T  A  A  I  S  F  S  G  G  F  K  V  L  S  L  F  I  Y  I  F  N  S  R  I  P  F  G  *  C  S  *  A  I  N  A  T  F  Y  F  L  I  W  *  N  V  T  F  E  L  D  L  C  T  S  *  K  S  S  D  S  I  F  L  S  S  V  *  I  F  T  S  L  C  F  G  Y  L  *  K  *  *  F  R  V  K  G  K  Y  H  K  F  G  L  F  D  C  *  S  D  L  S  A  V  L  L  V  L  L  L  I  F  A  S  S  W  K  F  F  L  F  F  C  F  F  D  M  F  W  K  L  N  L  G  L  F  F  W  V  *  S  H  C  *  A  A  L  V  C  *  Q  L  V  H  Y  L  E  L  I  V  F  V  F  A  V  C  C  N  S  I  K  G  Y  F  C  A  S  F  D  R  *  T  T  S  F  P  R  K  N  D  V  K  V  *  F  E  F  S  F  I  R  S   </first_frame>
            <second_frame>  S  S  A  S  S  H  C  T  R  R  N  L  S  R  R  R  S  L  S  P  E  D  L  K  S  *  V  S  S  F  I  S  S  I  H  E  F  P  L  V  S  V  H  E  P  *  T  L  L  F  I  F  *  F  G  E  M  *  L  L  N  W  I  Y  V  H  L  E  N  P  Q  I  Q  F  F  L  A  L  C  E  Y  L  R  R  C  A  S  A  T  C  R  N  D  N  L  E  S  K  E  N  I  I  S  L  A  S  S  T  V  R  A  I  C  L  L  C  F  W  F  F  F  *  S  L  L  L  A  G  N  F  F  F  F  S  A  S  S  I  C  F  G  N  *  I  W  G  C  F  F  G  S  K  A  T  V  E  L  P  L  C  V  S  S  *  Y  I  I  W  N  *  L  F  S  S  L  Q  S  A  A  I  A  S  K  D  T  S  V  L  P  L  I  D  E  Q  L  V  F  L  V  K  M  M  *  R  F  N  L  N  S  V  S  F  V  H  </second_frame>
            <third_frame>   L  R  P  V  H  T  A  L  A  G  I  S  H  G  G  D  L  F  L  R  R  I  *  S  P  K  S  L  H  L  Y  L  Q  F  T  N  S  L  W  L  V  F  M  S  H  K  R  Y  F  L  F  F  D  L  V  K  C  D  F  *  I  G  S  M  Y  I  L  K  I  L  R  F  N  F  S  *  L  C  V  N  I  Y  V  A  V  L  R  L  P  V  E  M  I  I  *  S  Q  R  K  I  S  *  V  W  P  L  R  L  L  E  R  F  V  C  C  A  F  G  S  S  F  N  L  C  F  *  L  E  I  F  S  F  F  L  L  L  R  Y  V  L  E  T  E  F  G  V  V  F  L  G  L  K  P  L  L  S  C  P  C  V  L  A  V  S  T  L  S  G  I  D  C  F  R  L  C  S  L  L  Q  *  H  Q  R  I  L  L  C  F  L  *  *  M  N  N  *  F  S  S  *  K  *  C  K  G  L  I  *  I  Q  F  H  S  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="75214" PGL_stop="75630"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75214" e_stop="75630"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="75214" e_stop="75630" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75214" stop="75630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGCATACGAAATTAAATTACAATACACACAAAAAAAATAGTTTATTTTTTGTTCTTTAAACTAAGGAATGTAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACTCCTAAATATTTTTTTTAAAAAAAATAGAACTAATAAATATAAATTTAAAACTAATCTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCTATTTTGTAACGGCAGGGATATATGTGAGCCGTTTGTATAATGGTAAGGGTATATATGTGCCACTTTTATAACGAGGGTATATCAGCTCCAATGACAAAGTTGAGG</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  V  Y  F  L  F  F  K  L  R  N  V  R  K  K  Q  N  K  N  K  K  L  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  S  *  I  F  F  L  K  K  I  E  L  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  M  V  R  V  Y  M  C  H  F  Y  N  E  G  I  S  A  P  M  T  K  L  R </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  A  Y  E  I  K  L  Q  Y  T  Q  K  K  *  F  I  F  C  S  L  N  *  G  M  *  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  K  Y  F  F  *  K  K  *  N  *  *  I  *  I  *  N  *  S  F  N  F  R  *  M  K  G  I  C  E  L  F  C  N  G  R  D  I  C  E  P  F  V  *  W  *  G  Y  I  C  A  T  F  I  T  R  V  Y  Q  L  Q  *  Q  S  *   </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  H  T  K  L  N  Y  N  T  H  K  K  N  S  L  F  F  V  L  *  T  K  E  C  K  K  K  T  K  *  E  *  E  T  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  L  L  N  I  F  F  K  K  N  R  T  N  K  Y  K  F  K  T  N  L  L  T  S  V  K  *  R  V  Y  V  S  Y  F  V  T  A  G  I  Y  V  S  R  L  Y  N  G  K  G  I  Y  V  P  L  L  *  R  G  Y  I  S  S  N  D  K  V  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="78648" PGL_stop="78097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78648" e_stop="78097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="78648" e_stop="78097" e_length="552"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78648" stop="78097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78423" stop="78108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGAGTACTGGAATTGATCTAACTGTCACAGTACTTACAAGTGGGTTCTGGCCTAGCTATAAATCTTGTGATTTGAGTCTACCTGTCGAGATGGCTAAGTGTGTACAAGTCTTCAACGAATTCTATCAGACAACAACGAAACACAGGAAACTGACATGGATTTATTCATTGGGTACGTGTAACGTCATTGGGAAGTTTGATTCAAAAACCATTGAATTGATTCTGGGAACCTATCAGGCTGCTGTTCTGTCATTGTTTAATTCGTCAGATAGATTGAGTTACTCGGAAATCAAAAGTCAGTTAAATTTAGCTGATGATGACTTGATCAGATTGCTTCAATCTCTTTCATGTGCTAAGTATAAAATTCTGATTAAAGATCCTAGCAATGCAACTGTTACATCATCTGATCATTTCGAGTTCAACTCCAAGTTCACTGACAGGATGAGACGGGTTAGGGTACCGTTACCTCTTGTGGATGAAAGGAAAAAGGTGGTGGAGGATGTAGGCAAAGATAGACGTTATGCAATCGATGCATGTATAGTACGTATTATG</gDNA_template>
            <first_frame> A  S  T  G  I  D  L  T  V  T  V  L  T  S  G  F  W  P  S  Y  K  S  C  D  L  S  L  P  V  E  M  A  K  C  V  Q  V  F  N  E  F  Y  Q  T  T  T  K  H  R  K  L  T  W  I  Y  S  L  G  T  C  N  V  I  G  K  F  D  S  K  T  I  E  L  I  L  G  T  Y  Q  A  A  V  L  S  L  F  N  S  S  D  R  L  S  Y  S  E  I  K  S  Q  L  N  L  A  D  D  D  L  I  R  L  L  Q  S  L  S  C  A  K  Y  K  I  L  I  K  D  P  S  N  A  T  V  T  S  S  D  H  F  E  F  N  S  K  F  T  D  R  M  R  R  V  R  V  P  L  P  L  V  D  E  R  K  K  V  V  E  D  V  G  K  D  R  R  Y  A  I  D  A  C  I  V  R  I  M </first_frame>
            <second_frame>  R  V  L  E  L  I  *  L  S  Q  Y  L  Q  V  G  S  G  L  A  I  N  L  V  I  *  V  Y  L  S  R  W  L  S  V  Y  K  S  S  T  N  S  I  R  Q  Q  R  N  T  G  N  *  H  G  F  I  H  W  V  R  V  T  S  L  G  S  L  I  Q  K  P  L  N  *  F  W  E  P  I  R  L  L  F  C  H  C  L  I  R  Q  I  D  *  V  T  R  K  S  K  V  S  *  I  *  L  M  M  T  *  S  D  C  F  N  L  F  H  V  L  S  I  K  F  *  L  K  I  L  A  M  Q  L  L  H  H  L  I  I  S  S  S  T  P  S  S  L  T  G  *  D  G  L  G  Y  R  Y  L  L  W  M  K  G  K  R  W  W  R  M  *  A  K  I  D  V  M  Q  S  M  H  V  *  Y  V  L   </second_frame>
            <third_frame>   E  Y  W  N  *  S  N  C  H  S  T  Y  K  W  V  L  A  *  L  *  I  L  *  F  E  S  T  C  R  D  G  *  V  C  T  S  L  Q  R  I  L  S  D  N  N  E  T  Q  E  T  D  M  D  L  F  I  G  Y  V  *  R  H  W  E  V  *  F  K  N  H  *  I  D  S  G  N  L  S  G  C  C  S  V  I  V  *  F  V  R  *  I  E  L  L  G  N  Q  K  S  V  K  F  S  *  *  *  L  D  Q  I  A  S  I  S  F  M  C  *  V  *  N  S  D  *  R  S  *  Q  C  N  C  Y  I  I  *  S  F  R  V  Q  L  Q  V  H  *  Q  D  E  T  G  *  G  T  V  T  S  C  G  *  K  E  K  G  G  G  G  C  R  Q  R  *  T  L  C  N  R  C  M  Y  S  T  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78648" stop="78097"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASTGIDLTVTVLTSGFWPSYKSCDLSLPVEMAKCVQVFNEFYQTTTKHRKLTWIYSLGTCNVIGKFDSKTIELILGTYQAAVLSLFNSSDRLSYSEIKSQLNLADDDLIRLLQSLSCAKYKILIKDPSNATVTSSDHFEFNSKFTDRMRRVRVPLPLVDERKKVVEDVGKDRRYAIDACIVRIM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="87109" PGL_stop="90621"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87109" e_stop="87264"/>
            <exon e_start="87379" e_stop="87486"/>
            <exon e_start="87635" e_stop="87793"/>
            <exon e_start="87866" e_stop="87949"/>
            <exon e_start="88036" e_stop="88241"/>
            <exon e_start="88444" e_stop="88545"/>
            <exon e_start="89271" e_stop="89380"/>
            <exon e_start="89764" e_stop="89915"/>
            <exon e_start="90209" e_stop="90621"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.488" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.969" e_score="0.976"/>
          <exon-intron don_prob="0.993" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87109" e_stop="87264" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.488" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87265" i_stop="87378" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87379" e_stop="87486" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="87487" i_stop="87634" i_length="148"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87635" e_stop="87793" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="87794" i_stop="87865" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="87866" e_stop="87949" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.969">
            <gDNA_intron_boundary i_start="87950" i_stop="88035" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88036" e_stop="88241" e_length="206"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.921">
            <gDNA_intron_boundary i_start="88242" i_stop="88443" i_length="202"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="88444" e_stop="88545" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.861" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88546" i_stop="89270" i_length="725"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89271" e_stop="89380" e_length="110"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89381" i_stop="89763" i_length="383"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89764" e_stop="89915" e_length="152"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89916" i_stop="90208" i_length="293"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="90209" e_stop="90621" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87109" stop="87264"/>
              <exon start="87379" stop="87486"/>
              <exon start="87635" stop="87793"/>
              <exon start="87866" stop="87949"/>
              <exon start="88036" stop="88218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88148" stop="88241"/>
              <exon start="88444" stop="88545"/>
              <exon start="89271" stop="89380"/>
              <exon start="89764" stop="89915"/>
              <exon start="90209" stop="90399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88148" stop="88241"/>
              <exon start="88444" stop="88545"/>
              <exon start="89271" stop="89380"/>
              <exon start="89764" stop="89915"/>
              <exon start="90209" stop="90398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90218" stop="90621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGACTTGACGAATAAAATTAATTCTTCAAAGGCCTTGTACATATCTCACTTTGAGGCTATGCAAAATGTAGTGAAGCTGCATAAAGCCACTTCTAATGCTGCTCTGGAGGAAATTTCGACTTTGGCTTCTTCTAATTCAATTTCCACTAAAGAA : TTTTTAGATGCAGAGTCTGTTGAAACAAATTTAATTTTTGATGAACTTCAGAACACTCTGTCAACCCACCAAGGAGAAATGGCAAATTTTGCTAGAGAGCTTCGTCAG : AGATTTAATGACAGTACAGAGCATTTGACAAATATCTCTGAGATCATACAAGGATTTTTTGACAAACTTTTAGAAGAATCAAAAAGACTTGAAAGACATTCAACAACAGCTGATGAGATTCAAACGAAGTCTATTGCTGAATTTGAGAAGGCATATGAG : GAGCAATCAAGATCAGATGCAGAAAAGCTTATTGCTGAGGTGACTTCCTTGGTCTCGAATCACATGCGTCGCCAAAAAGAACTG : GTTGGTGCAAGGCTTGGTGATCTTAGAGAAACTGTTTCTGGAAATAAGACATTCTTGGATGGGCATGTATCCTCTATGGAAGGTATTACAACAGATACAAAAAGAAAATGGCAGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAATGCTGATTTCTCAGCTGCTAAACATTGCCGAATGGAGTTACTCATGCAGAAGTG : TGTAAGCACAAGTGAAACAACTGTGAAACGGTGGCAAAGTACTCATGAATTGGCAAAAGACATGTGCAATCAACATGTTTCAACAATGCATTCAGTTGTCAG : GAACCTATGCGATAGCAATGAGCAACATGTTATTGAATTCGATTCCACAAGGGAAGCTGCTGAAGAAGCTGTGAAAAGGAATAGTGAAGATATCATTAAATCTATTGACG : GCTTGTCAGGGGAAGAGAGAGGATCTATATCTGGCATTCTGGATACTGCCAGTGCACACTCGGAGACCCTAGATGAACTTAAGAAAGATCATTGCACACAGTCTACCTCCATTGAACAGAAGGCCATTGAAACATTTCAGCAGAAGTTTATG : GATTATGAGCCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACAATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAATTCATTGGAGTCCTTCCAAGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTCTCACTGATTAACAATTAGCAGATTGGTCTCATCGTTCCCTCGTGCATATGATCACTTAATCTGTATCGGTATTTTCCTTGTATACTGAGTGAATACTGCAAACTGCAGTATATATTGTAGGTTGATTGGCACAGTCTTAAACAATAAATCCCACCTTGGGATTTAGAAAAATGGCTGTAAATGAGTAACTCTTGGTACATTTATTTAGTAAAAGATGGTGCTCTCTATGT</gDNA_template>
            <first_frame> L  D  L  T  N  K  I  N  S  S  K  A  L  Y  I  S  H  F  E  A  M  Q  N  V  V  K  L  H  K  A  T  S  N  A  A  L  E  E  I  S  T  L  A  S  S  N  S  I  S  T  K  E  :  F  L  D  A  E  S  V  E  T  N  L  I  F  D  E  L  Q  N  T  L  S  T  H  Q  G  E  M  A  N  F  A  R  E  L  R  Q  :  R  F  N  D  S  T  E  H  L  T  N  I  S  E  I  I  Q  G  F  F  D  K  L  L  E  E  S  K  R  L  E  R  H  S  T  T  A  D  E  I  Q  T  K  S  I  A  E  F  E  K  A  Y  E  :  E  Q  S  R  S  D  A  E  K  L  I  A  E  V  T  S  L  V  S  N  H  M  R  R  Q  K  E  L  :  V  G  A  R  L  G  D  L  R  E  T  V  S  G  N  K  T  F  L  D  G  H  V  S  S  M  E  G  I  T  T  D  T  K  R  K  W  Q  D  F  Y  T  Q  A  E  G  E  T  K  E  N  A  D  F  S  A  A  K  H  C  R  M  E  L  L  M  Q  K  C :   V  S  T  S  E  T  T  V  K  R  W  Q  S  T  H  E  L  A  K  D  M  C  N  Q  H  V  S  T  M  H  S  V  V  R :   N  L  C  D  S  N  E  Q  H  V  I  E  F  D  S  T  R  E  A  A  E  E  A  V  K  R  N  S  E  D  I  I  K  S  I  D   : G  L  S  G  E  E  R  G  S  I  S  G  I  L  D  T  A  S  A  H  S  E  T  L  D  E  L  K  K  D  H  C  T  Q  S  T  S  I  E  Q  K  A  I  E  T  F  Q  Q  K  F  M  :  D  Y  E  P  T  G  T  T  P  I  R  S  E  P  D  V  P  S  K  G  T  I  E  S  L  R  A  M  P  M  E  T  L  L  E  E  F  R  E  N  N  S  L  E  S  F  Q  V  K  E  L  K  P  S  L  I  P  R  S  P  L  S  L  I  N  N  *  Q  I  G  L  I  V  P  S  C  I  *  S  L  N  L  Y  R  Y  F  P  C  I  L  S  E  Y  C  K  L  Q  Y  I  L  *  V  D  W  H  S  L  K  Q  *  I  P  P  W  D  L  E  K  W  L  *  M  S  N  S  W  Y  I  Y  L  V  K  D  G  A  L  Y   </first_frame>
            <second_frame>  *  T  *  R  I  K  L  I  L  Q  R  P  C  T  Y  L  T  L  R  L  C  K  M  *  *  S  C  I  K  P  L  L  M  L  L  W  R  K  F  R  L  W  L  L  L  I  Q  F  P  L  K  N :   F  *  M  Q  S  L  L  K  Q  I  *  F  L  M  N  F  R  T  L  C  Q  P  T  K  E  K  W  Q  I  L  L  E  S  F  V  R :   D  L  M  T  V  Q  S  I  *  Q  I  S  L  R  S  Y  K  D  F  L  T  N  F  *  K  N  Q  K  D  L  K  D  I  Q  Q  Q  L  M  R  F  K  R  S  L  L  L  N  L  R  R  H  M  R :   S  N  Q  D  Q  M  Q  K  S  L  L  L  R  *  L  P  W  S  R  I  T  C  V  A  K  K  N  W :   L  V  Q  G  L  V  I  L  E  K  L  F  L  E  I  R  H  S  W  M  G  M  Y  P  L  W  K  V  L  Q  Q  I  Q  K  E  N  G  R  T  F  I  R  K  Q  K  V  R  P  K  K  M  L  I  S  Q  L  L  N  I  A  E  W  S  Y  S  C  R  S   : V  *  A  Q  V  K  Q  L  *  N  G  G  K  V  L  M  N  W  Q  K  T  C  A  I  N  M  F  Q  Q  C  I  Q  L  S   : G  T  Y  A  I  A  M  S  N  M  L  L  N  S  I  P  Q  G  K  L  L  K  K  L  *  K  G  I  V  K  I  S  L  N  L  L  T  :  A  C  Q  G  K  R  E  D  L  Y  L  A  F  W  I  L  P  V  H  T  R  R  P  *  M  N  L  R  K  I  I  A  H  S  L  P  P  L  N  R  R  P  L  K  H  F  S  R  S  L  W :   I  M  S  Q  L  E  Q  H  Q  L  G  L  N  Q  M  Y  Q  A  R  E  Q  L  S  R  C  E  P  C  Q  W  R  L  Y  *  R  N  F  E  R  T  I  H  W  S  P  S  K  *  R  N  *  S  H  H  L  Y  H  D  L  L  S  H  *  L  T  I  S  R  L  V  S  S  F  P  R  A  Y  D  H  L  I  C  I  G  I  F  L  V  Y  *  V  N  T  A  N  C  S  I  Y  C  R  L  I  G  T  V  L  N  N  K  S  H  L  G  I  *  K  N  G  C  K  *  V  T  L  G  T  F  I  *  *  K  M  V  L  S  M  </second_frame>
            <third_frame>   R  L  D  E  *  N  *  F  F  K  G  L  V  H  I  S  L  *  G  Y  A  K  C  S  E  A  A  *  S  H  F  *  C  C  S  G  G  N  F  D  F  G  F  F  *  F  N  F  H  *  R   : I  F  R  C  R  V  C  *  N  K  F  N  F  *  *  T  S  E  H  S  V  N  P  P  R  R  N  G  K  F  C  *  R  A  S  S   : E  I  *  *  Q  Y  R  A  F  D  K  Y  L  *  D  H  T  R  I  F  *  Q  T  F  R  R  I  K  K  T  *  K  T  F  N  N  S  *  *  D  S  N  E  V  Y  C  *  I  *  E  G  I  *   : G  A  I  K  I  R  C  R  K  A  Y  C  *  G  D  F  L  G  L  E  S  H  A  S  P  K  R  T   : G  W  C  K  A  W  *  S  *  R  N  C  F  W  K  *  D  I  L  G  W  A  C  I  L  Y  G  R  Y  Y  N  R  Y  K  K  K  M  A  G  L  L  Y  A  S  R  R  *  D  Q  R  K  C  *  F  L  S  C  *  T  L  P  N  G  V  T  H  A  E  V  :  C  K  H  K  *  N  N  C  E  T  V  A  K  Y  S  *  I  G  K  R  H  V  Q  S  T  C  F  N  N  A  F  S  C  Q  :  E  P  M  R  *  Q  *  A  T  C  Y  *  I  R  F  H  K  G  S  C  *  R  S  C  E  K  E  *  *  R  Y  H  *  I  Y  *  R :   L  V  R  G  R  E  R  I  Y  I  W  H  S  G  Y  C  Q  C  T  L  G  D  P  R  *  T  *  E  R  S  L  H  T  V  Y  L  H  *  T  E  G  H  *  N  I  S  A  E  V  Y   : G  L  *  A  N  W  N  N  T  N  *  V  *  T  R  C  T  K  Q  G  N  N  *  V  V  A  S  H  A  N  G  D  S  T  R  G  I  S  R  E  Q  F  I  G  V  L  P  S  K  G  T  K  A  I  T  Y  T  T  I  S  S  L  T  D  *  Q  L  A  D  W  S  H  R  S  L  V  H  M  I  T  *  S  V  S  V  F  S  L  Y  T  E  *  I  L  Q  T  A  V  Y  I  V  G  *  L  A  Q  S  *  T  I  N  P  T  L  G  F  R  K  M  A  V  N  E  *  L  L  V  H  L  F  S  K  R  W  C  S  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87109" stop="87264"/>
                    <exon start="87379" stop="87486"/>
                    <exon start="87635" stop="87793"/>
                    <exon start="87866" stop="87949"/>
                    <exon start="88036" stop="88241"/>
                    <exon start="88444" stop="88545"/>
                    <exon start="89271" stop="89380"/>
                    <exon start="89764" stop="89915"/>
                    <exon start="90209" stop="90409"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDLTNKINSSKALYISHFEAMQNVVKLHKATSNAALEEISTLASSNSISTKEFLDAESVETNLIFDELQNTLSTHQGEMANFARELRQRFNDSTEHLTNISEIIQGFFDKLLEESKRLERHSTTADEIQTKSIAEFEKAYEEQSRSDAEKLIAEVTSLVSNHMRRQKELVGARLGDLRETVSGNKTFLDGHVSSMEGITTDTKRKWQDFYTQAEGETKENADFSAAKHCRMELLMQKCVSTSETTVKRWQSTHELAKDMCNQHVSTMHSVVRNLCDSNEQHVIEFDSTREAAEEAVKRNSEDIIKSIDGLSGEERGSISGILDTASAHSETLDELKKDHCTQSTSIEQKAIETFQQKFMDYEPTGTTPIRSEPDVPSKGTIESLRAMPMETLLEEFRENNSLESFQVKELKPSLIPRSPLSLINN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="97646" PGL_stop="101632"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97646" e_stop="97886"/>
            <exon e_start="99172" e_stop="99180"/>
            <exon e_start="99258" e_stop="100279"/>
            <exon e_start="100459" e_stop="100703"/>
            <exon e_start="100894" e_stop="100993"/>
            <exon e_start="101125" e_stop="101632"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.654" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97646" e_stop="97886" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97887" i_stop="99171" i_length="1285"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99172" e_stop="99180" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.654">
            <gDNA_intron_boundary i_start="99181" i_stop="99257" i_length="77"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99258" e_stop="100279" e_length="1022"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="100280" i_stop="100458" i_length="179"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100459" e_stop="100703" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="0.961">
            <gDNA_intron_boundary i_start="100704" i_stop="100893" i_length="190"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="100894" e_stop="100993" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.986">
            <gDNA_intron_boundary i_start="100994" i_stop="101124" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="101125" e_stop="101632" e_length="508"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97646" stop="97886"/>
              <exon start="99172" stop="99180"/>
              <exon start="99258" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97688" stop="97886"/>
              <exon start="99172" stop="99180"/>
              <exon start="99258" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E741056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99280" stop="100004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99582" stop="100052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99582" stop="99993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99607" stop="99982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99746" stop="100279"/>
              <exon start="100459" stop="100555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99877" stop="100279"/>
              <exon start="100459" stop="100620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100116" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100116" stop="100279"/>
              <exon start="100459" stop="100703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100131" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100131" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100131" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100191" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100192" stop="100279"/>
              <exon start="100459" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100527" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100558" stop="100703"/>
              <exon start="100894" stop="100993"/>
              <exon start="101125" stop="101336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100918" stop="100993"/>
              <exon start="101125" stop="101632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTCTTCAATATCTTTCTCCAAAATCACAAAAAAAAAAAATGGAATTATTTATGAAAAACTCTTCTCTTTGGGGTTTAAAATTTTATTTATTTTGCTTATTTATAATTTTATCAAACATTAATAGGGCATTTGCTTCTCATAATATTTTTTTGGACTTGCAATCTTCAAGTGCTATTAGTGTCAAGAATGTTCATAGAACTCGTTTTCATTTTCAACCTCCTAAACATTGGATTAATG : ACCCTAATG : CACCAATGTATTATAATGGAGTGTATCATTTATTCTATCAATACAATCCAAAAGGATCAGTATGGGGCAATATTATTTGGGCTCATTCAGTCTCAAAAGACTTGATAAATTGGATCCATTTAGAACCTGCAATTTATCCATCCAAAAAATTTGACAAGTATGGTACTTGGTCTGGATCATCAACTATTTTACCTAATAACAAACCTGTTATCATATACACCGGAGTAGTAGATTCGTATAATAATCAAGTCCAGAACTACGCCATCCCGGCTAACCTATCTGATCCATTTCTTCGTAAATGGATCAAACCTAACAACAACCCGTTGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGATGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGGCATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATTCATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTACCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTCTTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGTATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATTTCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGTCAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAGGTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTGAAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGGGAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG : GCTGATGTTGAAGTGCTGTTCTCATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCCAAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTGTGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGGCTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG : ATCTTCCATGAGACAAAATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGAAGAAGTTATCTCTTAGGAGTTTG : ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTGGCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATTTATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCATGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTATATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATCCTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATGGATTTTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTTCCTTTTTGTTTTGTAACATAATCAAATGTGTGGTCTTATGTAGAACTAATATTTGGTAATATTAGGCAAGTTGTTATGTGACTTATTTTATTCAAAAATATAATAAGAAGTTCAAAGAGAAGA</gDNA_template>
            <first_frame> I  I  L  Q  Y  L  S  P  K  S  Q  K  K  K  M  E  L  F  M  K  N  S  S  L  W  G  L  K  F  Y  L  F  C  L  F  I  I  L  S  N  I  N  R  A  F  A  S  H  N  I  F  L  D  L  Q  S  S  S  A  I  S  V  K  N  V  H  R  T  R  F  H  F  Q  P  P  K  H  W  I  N   : D  P  N   : A  P  M  Y  Y  N  G  V  Y  H  L  F  Y  Q  Y  N  P  K  G  S  V  W  G  N  I  I  W  A  H  S  V  S  K  D  L  I  N  W  I  H  L  E  P  A  I  Y  P  S  K  K  F  D  K  Y  G  T  W  S  G  S  S  T  I  L  P  N  N  K  P  V  I  I  Y  T  G  V  V  D  S  Y  N  N  Q  V  Q  N  Y  A  I  P  A  N  L  S  D  P  F  L  R  K  W  I  K  P  N  N  N  P  L  I  V  P  D  N  S  I  N  R  T  E  F  R  D  P  T  T  A  W  M  G  Q  D  G  L  W  R  I  L  I  A  S  M  R  K  H  R  G  M  A  L  L  Y  R  S  R  D  F  M  K  W  I  K  A  Q  H  P  L  H  S  S  T  N  T  G  N  W  E  C  P  D  F  F  P  V  L  F  N  S  T  N  G  L  D  V  S  Y  R  G  K  N  V  K  Y  V  L  K  N  S  L  D  V  A  R  F  D  Y  Y  T  I  G  M  Y  H  T  K  I  D  R  Y  I  P  N  N  N  S  I  D  G  W  K  G  L  R  I  D  Y  G  N  F  Y  A  S  K  T  F  Y  D  P  S  R  N  R  R  V  I  W  G  W  S  N  E  S  D  V  L  P  D  D  E  I  K  K  G  W  A  G  I  Q  G  I  P  R  Q  V  W  L  N  L  S  G  K  Q  L  L  Q  W  P  I  E  E  L  E  T  L  R  K  Q  K  V  Q  L  N  N  K  K  L  S  K  G  E  M  F  E  V  K  G  I  S  A  S  Q  :  A  D  V  E  V  L  F  S  F  S  S  L  N  E  A  E  Q  F  D  P  R  W  A  D  L  Y  A  Q  D  V  C  A  I  K  G  S  T  I  Q  G  G  L  G  P  F  G  L  V  T  L  A  S  K  N  L  E  E  Y  T  P  V  F  F  R  V  F  K  A  Q  K  S  Y  K  I  L  M  C  S  D  A  R  R :   S  S  M  R  Q  N  E  A  M  Y  K  P  S  F  A  G  Y  V  D  V  D  L  E  D  M  K  K  L  S  L  R  S  L  :  I  D  N  S  V  V  E  S  F  G  A  G  G  K  T  C  I  T  S  R  V  Y  P  T  L  A  I  Y  D  N  A  H  L  F  V  F  N  N  G  S  E  T  I  T  I  E  T  L  N  A  W  S  M  D  A  C  K  M  N  *  I  F  S  K  K  L  E  L  C  L  Q  L  Y  M  S  K  E  T  K  I  V  L  N  L  T  V  D  D  V  H  K  N  P  L  *  L  S  L  I  Y  F  G  E  F  R  R  Q  S  V  C  M  D  F  S  S  T  I  Y  I  Y  I  K  *  E  I  C  *  L  S  F  L  F  C  N  I  I  K  C  V  V  L  C  R  T  N  I  W  *  Y  *  A  S  C  Y  V  T  Y  F  I  Q  K  Y  N  K  K  F  K  E  K  </first_frame>
            <second_frame>  L  F  F  N  I  F  L  Q  N  H  K  K  K  K  W  N  Y  L  *  K  T  L  L  F  G  V  *  N  F  I  Y  F  A  Y  L  *  F  Y  Q  T  L  I  G  H  L  L  L  I  I  F  F  W  T  C  N  L  Q  V  L  L  V  S  R  M  F  I  E  L  V  F  I  F  N  L  L  N  I  G  L  M  :  T  L  M  :  H  Q  C  I  I  M  E  C  I  I  Y  S  I  N  T  I  Q  K  D  Q  Y  G  A  I  L  F  G  L  I  Q  S  Q  K  T  *  *  I  G  S  I  *  N  L  Q  F  I  H  P  K  N  L  T  S  M  V  L  G  L  D  H  Q  L  F  Y  L  I  T  N  L  L  S  Y  T  P  E  *  *  I  R  I  I  I  K  S  R  T  T  P  S  R  L  T  Y  L  I  H  F  F  V  N  G  S  N  L  T  T  T  R  *  S  S  L  I  T  V  S  I  E  L  S  F  A  I  Q  L  Q  L  G  W  A  K  M  G  F  G  G  F  *  *  Q  V  *  E  N  I  E  G  W  H  C  C  I  E  V  E  I  L  *  N  G  S  K  P  N  I  H  F  I  H  L  L  I  L  E  I  G  S  V  L  I  F  S  L  Y  Y  L  I  V  P  M  V  *  M  Y  R  I  A  E  K  M  L  N  M  S  S  R  I  V  L  M  L  L  G  L  I  I  T  L  L  A  C  I  T  P  K  *  I  G  I  F  R  I  T  I  Q  L  M  V  G  R  D  *  E  S  T  M  V  I  S  M  H  R  R  H  S  M  I  L  A  E  I  E  G  L  F  G  V  G  Q  M  N  P  M  Y  Y  L  T  M  K  L  R  K  D  G  L  E  F  K  V  F  R  D  K  Y  G  *  T  L  V  V  N  N  Y  F  N  G  L  L  K  N  *  K  P  *  G  S  K  R  S  N  *  T  T  R  S  *  A  R  E  K  C  L  K  L  K  G  S  Q  H  H  R :   L  M  L  K  C  C  S  H  F  Q  V  *  T  R  P  N  N  L  I  L  D  G  L  T  Y  M  P  K  T  F  V  P  L  R  V  R  L  S  K  V  G  L  D  H  L  G  L  *  H  *  L  L  K  T  *  K  N  T  H  L  F  S  S  E  C  S  R  L  K  K  V  I  R  F  S  C  A  Q  M  L  E   : D  L  P  *  D  K  M  K  Q  C  T  S  P  H  L  L  D  M  *  M  *  I  *  K  T  *  R  S  Y  L  L  G  V  * :   L  I  T  Q  *  W  K  V  S  V  L  V  A  K  H  A  *  H  Q  G  C  I  Q  L  *  R  F  M  I  M  H  I  Y  L  F  L  T  M  A  L  R  Q  S  Q  L  R  L  *  M  L  G  A  W  M  H  V  R  *  T  K  Y  F  Q  K  N  W  N  Y  V  Y  N  Y  I  C  L  K  R  Q  K  L  C  *  I  *  Q  *  M  M  F  T  K  I  L  Y  N  C  L  *  F  I  L  V  N  L  E  G  K  V  C  V  W  I  F  L  V  P  Y  I  Y  I  L  S  K  K  F  V  S  F  P  F  C  F  V  T  *  S  N  V  W  S  Y  V  E  L  I  F  G  N  I  R  Q  V  V  M  *  L  I  L  F  K  N  I  I  R  S  S  K  R  R </second_frame>
            <third_frame>   Y  S  S  I  S  F  S  K  I  T  K  K  K  N  G  I  I  Y  E  K  L  F  S  L  G  F  K  I  L  F  I  L  L  I  Y  N  F  I  K  H  *  *  G  I  C  F  S  *  Y  F  F  G  L  A  I  F  K  C  Y  *  C  Q  E  C  S  *  N  S  F  S  F  S  T  S  *  T  L  D  *  * :   P  *  C :   T  N  V  L  *  W  S  V  S  F  I  L  S  I  Q  S  K  R  I  S  M  G  Q  Y  Y  L  G  S  F  S  L  K  R  L  D  K  L  D  P  F  R  T  C  N  L  S  I  Q  K  I  *  Q  V  W  Y  L  V  W  I  I  N  Y  F  T  *  *  Q  T  C  Y  H  I  H  R  S  S  R  F  V  *  *  S  S  P  E  L  R  H  P  G  *  P  I  *  S  I  S  S  *  M  D  Q  T  *  Q  Q  P  V  D  R  P  *  *  Q  Y  Q  *  N  *  V  S  R  S  N  Y  S  L  D  G  P  R  W  A  L  E  D  F  N  S  K  Y  E  K  T  *  R  D  G  I  V  V  *  K  *  R  F  Y  E  M  D  Q  S  P  T  S  T  S  F  I  Y  *  Y  W  K  L  G  V  S  *  F  F  P  C  I  I  *  *  Y  Q  W  F  R  C  I  V  S  R  K  K  C  *  I  C  P  Q  E  *  S  *  C  C  *  V  *  L  L  H  Y  W  H  V  S  H  Q  N  R  *  V  Y  S  E  *  Q  F  N  *  W  L  E  G  I  E  N  R  L  W  *  F  L  C  I  E  D  I  L  *  S  *  Q  K  S  K  G  Y  L  G  L  V  K  *  I  R  C  I  T  *  R  *  N  *  E  R  M  G  W  N  S  R  Y  S  A  T  S  M  A  K  P  *  W  *  T  I  T  S  M  A  Y  *  R  I  R  N  P  K  E  A  K  G  P  I  E  Q  Q  E  V  E  Q  G  R  N  V  *  S  *  R  D  L  S  I  T   : G  *  C  *  S  A  V  L  I  F  K  F  E  R  G  R  T  I  *  S  *  M  G  *  P  I  C  P  R  R  L  C  H  *  G  F  D  Y  P  R  W  A  W  T  I  W  A  C  D  I  S  F  *  K  L  R  R  I  H  T  C  F  L  P  S  V  Q  G  S  K  K  L  *  D  S  H  V  L  R  C  *  K  :  I  F  H  E  T  K  *  S  N  V  Q  A  L  I  C  W  I  C  R  C  R  F  R  R  H  E  E  V  I  S  *  E  F   : D  *  *  L  S  S  G  K  F  R  C  W  W  Q  N  M  H  N  I  K  G  V  S  N  F  S  D  L  *  *  C  T  F  I  C  F  *  Q  W  L  *  D  N  H  N  *  D  S  E  C  L  E  H  G  C  M  *  D  E  L  N  I  F  K  K  I  G  I  M  S  T  I  I  Y  V  *  R  D  K  N  C  V  K  F  N  S  R  *  C  S  Q  K  S  S  I  I  V  S  N  L  F  W  *  I  *  K  A  K  C  V  Y  G  F  F  *  Y  H  I  Y  I  Y  *  V  R  N  L  L  A  F  L  F  V  L  *  H  N  Q  M  C  G  L  M  *  N  *  Y  L  V  I  L  G  K  L  L  C  D  L  F  Y  S  K  I  *  *  E  V  Q  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97646" stop="97886"/>
                    <exon start="99172" stop="99180"/>
                    <exon start="99258" stop="100279"/>
                    <exon start="100459" stop="100703"/>
                    <exon start="100894" stop="100993"/>
                    <exon start="101125" stop="101304"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1794</number_coding_nucleotides>
                  <number_encoded_amino_acids>598</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILQYLSPKSQKKKMELFMKNSSLWGLKFYLFCLFIILSNINRAFASHNIFLDLQSSSAISVKNVHRTRFHFQPPKHWINDPNAPMYYNGVYHLFYQYNPKGSVWGNIIWAHSVSKDLINWIHLEPAIYPSKKFDKYGTWSGSSTILPNNKPVIIYTGVVDSYNNQVQNYAIPANLSDPFLRKWIKPNNNPLIVPDNSINRTEFRDPTTAWMGQDGLWRILIASMRKHRGMALLYRSRDFMKWIKAQHPLHSSTNTGNWECPDFFPVLFNSTNGLDVSYRGKNVKYVLKNSLDVARFDYYTIGMYHTKIDRYIPNNNSIDGWKGLRIDYGNFYASKTFYDPSRNRRVIWGWSNESDVLPDDEIKKGWAGIQGIPRQVWLNLSGKQLLQWPIEELETLRKQKVQLNNKKLSKGEMFEVKGISASQADVEVLFSFSSLNEAEQFDPRWADLYAQDVCAIKGSTIQGGLGPFGLVTLASKNLEEYTPVFFRVFKAQKSYKILMCSDARRSSMRQNEAMYKPSFAGYVDVDLEDMKKLSLRSLIDNSVVESFGAGGKTCITSRVYPTLAIYDNAHLFVFNNGSETITIETLNAWSMDACKMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="102718" PGL_stop="106270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102718" e_stop="103019"/>
            <exon e_start="103276" e_stop="103284"/>
            <exon e_start="103618" e_stop="104636"/>
            <exon e_start="105365" e_stop="105609"/>
            <exon e_start="105708" e_stop="105804"/>
            <exon e_start="105880" e_stop="106270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="102718" e_stop="103019" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103020" i_stop="103275" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103276" e_stop="103284" e_length="9"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.813">
            <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="103618" e_stop="104636" e_length="1019"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105365" e_stop="105609" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.951">
            <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105708" e_stop="105804" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.974">
            <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="105880" e_stop="106270" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102718" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102720" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102729" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102730" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102731" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102732" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="104089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102732" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102733" stop="103019"/>
              <exon start="103276" stop="103284"/>
              <exon start="103618" stop="103960"/>
            </gDNA_exon_coordinates>
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              <exon start="105435" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105468" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105475" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105533" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105918" stop="106071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTTCTTTTCTCCTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG : ATCCCAATG : CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAG : GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG : GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG : ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAATAAGGAGAAAGGAACTATGGTAAAAGGGGGAAATATGAGATTTTGATGGACATATAAGAGTTTGTTATTTTGATATTTCAACTCTATTTTTTTTGTTTATCAAATTAGATATCCCTCGAGTCAAAAAAAATGTATATAGATTTATCCTCTATTTTCAATTTATGACAATAATGCTATGTTTTTGCTTTCAAAA</gDNA_template>
            <first_frame> M  F  L  F  S  L  S  K  K  K  K  I  K  K  N  Y  L  D  *  I  S  L  S  V  K  A  Q  S  L  K  *  N  K  N  Y  G  L  F  I  *  *  K  F  S  L  G  F  A  S  Y  L  S  L  L  F  C  N  F  I  I  Q  *  C  C  F  C  F  S  *  S  F  Y  S  L  A  I  S  K  C  C  K  C  S  Y  C  S  S  N  W  L  S  F  S  A  R  K  T  L  D  Q  * :   S  Q  C :   T  N  V  F  Q  W  S  V  S  S  I  L  P  V  Q  P  K  W  F  S  M  G  *  H  C  L  G  S  F  R  F  K  R  L  D  Q  L  D  Q  F  R  T  C  N  L  P  I  K  A  I  *  S  I  R  Y  L  V  W  I  S  N  H  P  T  W  *  Q  A  S  H  L  V  H  R  N  H  R  C  Q  P  N  P  S  P  K  L  R  N  P  S  *  L  I  R  S  I  S  P  R  M  D  Q  A  R  Q  Q  P  I  N  Y  S  R  *  K  Y  Q  Q  D  Q  V  S  *  P  N  N  S  M  D  G  *  R  R  A  L  E  N  R  H  G  K  F  E  E  T  Q  Q  G  L  S  Y  N  V  *  E  Q  R  L  Y  E  M  G  Q  G  *  T  P  T  S  L  N  *  R  H  W  K  L  G  M  P  *  F  L  P  S  F  I  E  R  Y  *  W  V  G  S  I  R  *  G  T  Q  V  R  A  E  E  Q  Y  G  S  Y  S  I  *  V  L  Y  T  W  K  I  R  Y  E  K  R  *  V  R  S  R  S  R  F  C  R  *  F  E  G  I  E  T  R  L  R  *  L  L  R  I  E  V  I  L  R  S  K  Q  K  S  K  G  Y  L  G  L  V  *  *  I  R  Y  I  P  R  G  *  *  C  E  G  M  G  W  D  S  I  D  S  S  *  S  M  A  *  S  K  W  *  A  V  G  S  M  A  C  G  G  T  R  N  P  K  N  S  K  G  S  I  E  Q  Q  E  D  E  Q  W  G  E  D  *  S  Y  R  N  H  T  S  T   : G  *  C  *  S  D  I  L  I  C  K  F  G  *  G  R  V  I  *  S  *  M  E  *  Y  V  C  T  R  C  L  W  T  Q  G  C  R  C  S  R  W  A  W  A  I  W  S  C  Y  I  S  Y  *  K  L  G  R  K  H  T  G  F  L  P  S  F  Q  S  T  A  K  L  Q  G  S  L  V  F  *  R  *  K  :  V  N  S  *  V  Q  *  N  N  V  Q  S  F  I  C  W  I  C  *  C  *  F  G  *  Q  E  I  V  T  Q  K  L   : D  *  *  F  S  Y  R  N  F  W  C  W  W  K  D  M  Y  N  I  E  G  L  S  N  I  G  N  *  R  R  G  T  F  I  R  V  *  Q  R  N  G  A  N  H  N  *  E  F  G  C  M  E  Y  G  Q  S  *  D  T  I  L  K  K  K  K  R  I  R  R  K  E  L  W  *  K  G  E  I  *  D  F  D  G  H  I  R  V  C  Y  F  D  I  S  T  L  F  F  L  F  I  K  L  D  I  P  R  V  K  K  N  V  Y  R  F  I  L  Y  F  Q  F  M  T  I  M  L  C  F  C  F  Q   </first_frame>
            <second_frame>  C  F  F  S  P  Y  P  K  K  K  K  L  K  K  I  I  *  I  K  Y  H  Y  L  S  K  P  N  H  *  N  K  I  K  I  M  D  Y  S  S  N  K  S  S  R  W  A  L  P  V  I  L  V  C  F  F  V  I  L  L  S  N  N  V  V  F  A  S  H  K  V  F  I  H  L  Q  S  Q  N  A  V  N  V  H  T  V  H  R  T  G  Y  H  F  Q  P  E  K  H  W  I  N   : D  P  N   : A  P  M  Y  F  N  G  V  Y  H  L  F  Y  Q  Y  N  P  N  G  S  V  W  G  N  I  V  W  A  H  S  V  S  K  D  L  I  N  W  I  N  L  E  P  A  I  Y  P  S  K  P  F  D  Q  F  G  T  W  S  G  S  A  T  I  L  P  G  N  K  P  V  I  L  Y  T  G  I  I  D  A  N  Q  T  Q  V  Q  N  Y  A  I  P  A  N  L  S  D  P  Y  L  R  E  W  I  K  P  D  N  N  P  L  I  I  A  D  E  S  I  N  K  T  K  F  R  D  P  T  T  A  W  M  G  K  D  G  H  W  R  I  V  M  G  S  L  R  K  H  S  R  G  L  A  I  M  Y  R  S  K  D  F  M  K  W  V  K  A  K  H  P  L  H  S  T  N  G  T  G  N  W  E  C  P  D  F  Y  P  V  S  S  K  G  T  D  G  L  D  Q  Y  G  E  E  H  K  Y  V  L  K  N  S  M  D  L  T  R  F  E  Y  Y  T  L  G  K  Y  D  T  K  K  D  R  Y  V  P  D  P  D  S  V  D  S  L  K  G  L  R  L  D  Y  G  N  F  Y  A  S  K  S  F  Y  D  P  S  K  N  R  R  V  I  W  G  W  S  N  E  S  D  I  F  P  E  D  D  N  A  K  G  W  A  G  I  Q  L  I  P  R  K  V  W  L  D  P  S  G  K  Q  L  V  Q  W  P  V  E  E  L  E  T  L  R  T  Q  K  V  Q  L  S  N  K  K  M  N  N  G  E  K  I  E  V  T  G  I  T  P  A  Q  :  A  D  V  E  V  T  F  S  F  A  S  L  D  K  A  E  S  F  D  P  K  W  N  D  M  Y  A  Q  D  V  C  G  L  K  G  A  D  V  Q  G  G  L  G  P  F  G  L  A  T  L  A  T  E  N  L  E  E  N  T  P  V  F  F  R  V  F  K  A  Q  Q  N  Y  K  V  L  L  C  S  D  A  K  R :   S  T  L  K  F  N  E  T  M  Y  K  A  S  F  A  G  F  V  D  V  D  L  A  D  K  K  L  S  L  R  S  L  :  I  D  N  S  V  I  E  T  F  G  A  G  G  K  T  C  I  T  S  R  V  Y  P  T  L  A  I  N  D  E  A  H  L  F  A  F  N  N  G  T  E  P  I  T  I  E  S  L  D  A  W  S  M  G  K  A  K  I  Q  Y  *  R  K  K  K  E  *  G  E  R  N  Y  G  K  R  G  K  Y  E  I  L  M  D  I  *  E  F  V  I  L  I  F  Q  L  Y  F  F  C  L  S  N  *  I  S  L  E  S  K  K  M  Y  I  D  L  S  S  I  F  N  L  *  Q  *  C  Y  V  F  A  F  K  </second_frame>
            <third_frame>   V  S  F  L  L  I  Q  K  K  K  N  *  K  K  L  F  R  L  N  I  T  I  C  Q  S  P  I  I  K  I  K  *  K  L  W  I  I  H  L  I  K  V  L  V  G  L  C  Q  L  S  *  F  A  F  L  *  F  Y  Y  P  I  M  L  F  L  L  L  I  K  F  L  F  T  C  N  L  K  M  L  *  M  F  I  L  F  I  E  L  V  I  I  F  S  P  K  N  I  G  S  M  :  I  P  M  :  H  Q  C  I  S  M  E  C  I  I  Y  S  T  S  T  T  Q  M  V  Q  Y  G  V  T  L  F  G  L  I  P  F  Q  K  T  *  S  I  G  S  I  *  N  L  Q  F  T  H  Q  S  H  L  I  N  S  V  P  G  L  D  Q  Q  P  S  Y  L  V  T  S  Q  S  S  C  T  P  E  S  *  M  P  T  K  P  K  S  K  T  T  Q  S  Q  L  T  Y  P  I  H  I  S  A  N  G  S  S  Q  T  T  T  H  *  L  *  P  M  K  V  S  T  R  P  S  F  V  T  Q  Q  Q  H  G  W  V  K  T  G  I  G  E  S  S  W  E  V  *  G  N  T  A  G  A  *  L  *  C  I  G  A  K  T  L  *  N  G  S  R  L  N  T  H  F  T  Q  L  T  A  L  E  T  G  N  A  L  I  F  T  Q  F  H  R  K  V  L  M  G  W  I  N  T  V  R  N  T  S  T  C  *  R  T  V  W  I  L  L  D  L  S  I  I  H  L  E  N  T  I  R  K  K  I  G  T  F  Q  I  Q  I  L  S  I  V  *  R  D  *  D  S  I  T  V  T  S  T  H  R  S  H  S  T  I  Q  A  K  I  E  G  L  S  G  V  G  L  M  N  Q  I  Y  S  Q  R  M  I  M  R  R  D  G  L  G  F  N  *  F  L  V  K  Y  G  L  I  Q  V  V  S  S  W  F  N  G  L  W  R  N  *  K  P  *  E  L  K  R  F  N  *  A  T  R  R  *  T  M  G  R  R  L  K  L  Q  E  S  H  Q  H  R :   L  M  L  K  *  H  S  H  L  Q  V  W  I  R  Q  S  H  L  I  L  N  G  M  I  C  M  H  K  M  F  V  D  S  R  V  Q  M  F  K  V  G  L  G  H  L  V  L  L  H  *  L  L  K  T  W  K  K  T  H  R  F  S  S  E  F  S  K  H  S  K  T  T  R  F  S  C  V  L  T  L  K   : G  Q  L  L  S  S  M  K  Q  C  T  K  L  H  L  L  D  L  L  M  L  I  W  L  T  R  N  C  H  S  E  A  * :   L  I  I  Q  L  *  K  L  L  V  L  V  E  R  H  V  *  H  R  G  F  I  Q  H  W  Q  L  T  T  R  H  I  Y  S  R  L  T  T  E  R  S  Q  S  Q  L  R  V  W  M  H  G  V  W  A  K  L  R  Y  N  I  E  E  K  K  K  N  K  E  K  G  T  M  V  K  G  G  N  M  R  F  *  W  T  Y  K  S  L  L  F  *  Y  F  N  S  I  F  F  V  Y  Q  I  R  Y  P  S  S  Q  K  K  C  I  *  I  Y  P  L  F  S  I  Y  D  N  N  A  M  F  L  L  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102806" stop="103019"/>
                    <exon start="103276" stop="103284"/>
                    <exon start="103618" stop="104636"/>
                    <exon start="105365" stop="105609"/>
                    <exon start="105708" stop="105804"/>
                    <exon start="105880" stop="106062"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1764</number_coding_nucleotides>
                  <number_encoded_amino_acids>588</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKIKIMDYSSNKSSRWALPVILVCFFVILLSNNVVFASHKVFIHLQSQNAVNVHTVHRTGYHFQPEKHWINDPNAPMYFNGVYHLFYQYNPNGSVWGNIVWAHSVSKDLINWINLEPAIYPSKPFDQFGTWSGSATILPGNKPVILYTGIIDANQTQVQNYAIPANLSDPYLREWIKPDNNPLIIADESINKTKFRDPTTAWMGKDGHWRIVMGSLRKHSRGLAIMYRSKDFMKWVKAKHPLHSTNGTGNWECPDFYPVSSKGTDGLDQYGEEHKYVLKNSMDLTRFEYYTLGKYDTKKDRYVPDPDSVDSLKGLRLDYGNFYASKSFYDPSKNRRVIWGWSNESDIFPEDDNAKGWAGIQLIPRKVWLDPSGKQLVQWPVEELETLRTQKVQLSNKKMNNGEKIEVTGITPAQADVEVTFSFASLDKAESFDPKWNDMYAQDVCGLKGADVQGGLGPFGLATLATENLEENTPVFFRVFKAQQNYKVLLCSDAKRSTLKFNETMYKASFAGFVDVDLADKKLSLRSLIDNSVIETFGAGGKTCITSRVYPTLAINDEAHLFAFNNGTEPITIESLDAWSMGKAKIQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102733" e_stop="103019"/>
            <exon e_start="103248" e_stop="103284"/>
            <exon e_start="103618" e_stop="104636"/>
            <exon e_start="105365" e_stop="105609"/>
            <exon e_start="105708" e_stop="105804"/>
            <exon e_start="105880" e_stop="106079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.935"/>
          <exon-intron don_prob="1.000" acc_prob="0.813" e_score="0.973"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.985"/>
          <exon-intron don_prob="0.981" acc_prob="0.951" e_score="0.996"/>
          <exon-intron don_prob="0.964" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="102733" e_stop="103019" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103020" i_stop="103247" i_length="228"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="103248" e_stop="103284" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.813">
            <gDNA_intron_boundary i_start="103285" i_stop="103617" i_length="333"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="103618" e_stop="104636" e_length="1019"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104637" i_stop="105364" i_length="728"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="105365" e_stop="105609" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.951">
            <gDNA_intron_boundary i_start="105610" i_stop="105707" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105708" e_stop="105804" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.974">
            <gDNA_intron_boundary i_start="105805" i_stop="105879" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="105880" e_stop="106079" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102733" stop="103007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102789" stop="103019"/>
              <exon start="103248" stop="103284"/>
              <exon start="103618" stop="104021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102790" stop="103019"/>
              <exon start="103248" stop="103284"/>
              <exon start="103618" stop="103773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103629" stop="104163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103640" stop="104372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103667" stop="104289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103689" stop="104163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103693" stop="104024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103703" stop="104177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103708" stop="104148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103711" stop="104051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103718" stop="104268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103745" stop="104157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103790" stop="104468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103806" stop="104189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103806" stop="104160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103818" stop="104292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103827" stop="104249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103827" stop="104022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103833" stop="104425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103838" stop="104470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103891" stop="104163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103898" stop="104438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104007" stop="104481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104017" stop="104563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104017" stop="104437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104060" stop="104636"/>
              <exon start="105365" stop="105390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104081" stop="104563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104086" stop="104483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104086" stop="104477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104088" stop="104636"/>
              <exon start="105365" stop="105516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104088" stop="104582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104092" stop="104636"/>
              <exon start="105365" stop="105402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104119" stop="104513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104119" stop="104504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104140" stop="104426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104148" stop="104511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104157" stop="104636"/>
              <exon start="105365" stop="105540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104157" stop="104636"/>
              <exon start="105365" stop="105459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104157" stop="104636"/>
              <exon start="105365" stop="105451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104165" stop="104636"/>
              <exon start="105365" stop="105599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104188" stop="104561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104190" stop="104628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104193" stop="104636"/>
              <exon start="105365" stop="105542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104193" stop="104610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104209" stop="104636"/>
              <exon start="105365" stop="105437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104215" stop="104636"/>
              <exon start="105365" stop="105546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104218" stop="104607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104232" stop="104636"/>
              <exon start="105365" stop="105446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104248" stop="104636"/>
              <exon start="105365" stop="105566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104252" stop="104636"/>
              <exon start="105365" stop="105439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104290" stop="104636"/>
              <exon start="105365" stop="105604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104320" stop="104630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104332" stop="104636"/>
              <exon start="105365" stop="105609"/>
              <exon start="105708" stop="105774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104380" stop="104636"/>
              <exon start="105365" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104414" stop="104636"/>
              <exon start="105365" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104466" stop="104636"/>
              <exon start="105365" stop="105457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104489" stop="104636"/>
              <exon start="105365" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104538" stop="104636"/>
              <exon start="105365" stop="105609"/>
              <exon start="105708" stop="105800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361848" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104561" stop="104636"/>
              <exon start="105365" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="105914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105378" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105412" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105423" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105423" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105435" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105468" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105475" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105533" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="105609"/>
              <exon start="105708" stop="105804"/>
              <exon start="105880" stop="106077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105918" stop="106071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG : GATGTCTCTTGGTCAAAACATACAATAGATCCCAATG : CACCAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTTTGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGGTCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATTTTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGTACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACGATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGAGACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAAGGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGGGATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGTTGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCAACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAG : GCTGATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAATGGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGCTTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTTTCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAAG : GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATGTTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG : ATTGATAATTCAGTTATAGAAACTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTAACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTTTGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAATA</gDNA_template>
            <first_frame> L  S  K  K  K  K  I  K  K  N  Y  L  D  *  I  S  L  S  V  K  A  Q  S  L  K  *  N  K  N  Y  G  L  F  I  *  *  K  F  S  L  G  F  A  S  Y  L  S  L  L  F  C  N  F  I  I  Q  *  C  C  F  C  F  S  *  S  F  Y  S  L  A  I  S  K  C  C  K  C  S  Y  C  S  S  N  W  L  S  F  S  A  R  K  T  L  D  Q  W :   M  S  L  G  Q  N  I  Q  *  I  P  M  :  H  Q  C  I  S  M  E  C  I  I  Y  S  T  S  T  T  Q  M  V  Q  Y  G  V  T  L  F  G  L  I  P  F  Q  K  T  *  S  I  G  S  I  *  N  L  Q  F  T  H  Q  S  H  L  I  N  S  V  P  G  L  D  Q  Q  P  S  Y  L  V  T  S  Q  S  S  C  T  P  E  S  *  M  P  T  K  P  K  S  K  T  T  Q  S  Q  L  T  Y  P  I  H  I  S  A  N  G  S  S  Q  T  T  T  H  *  L  *  P  M  K  V  S  T  R  P  S  F  V  T  Q  Q  Q  H  G  W  V  K  T  G  I  G  E  S  S  W  E  V  *  G  N  T  A  G  A  *  L  *  C  I  G  A  K  T  L  *  N  G  S  R  L  N  T  H  F  T  Q  L  T  A  L  E  T  G  N  A  L  I  F  T  Q  F  H  R  K  V  L  M  G  W  I  N  T  V  R  N  T  S  T  C  *  R  T  V  W  I  L  L  D  L  S  I  I  H  L  E  N  T  I  R  K  K  I  G  T  F  Q  I  Q  I  L  S  I  V  *  R  D  *  D  S  I  T  V  T  S  T  H  R  S  H  S  T  I  Q  A  K  I  E  G  L  S  G  V  G  L  M  N  Q  I  Y  S  Q  R  M  I  M  R  R  D  G  L  G  F  N  *  F  L  V  K  Y  G  L  I  Q  V  V  S  S  W  F  N  G  L  W  R  N  *  K  P  *  E  L  K  R  F  N  *  A  T  R  R  *  T  M  G  R  R  L  K  L  Q  E  S  H  Q  H  R :   L  M  L  K  *  H  S  H  L  Q  V  W  I  R  Q  S  H  L  I  L  N  G  M  I  C  M  H  K  M  F  V  D  S  R  V  Q  M  F  K  V  G  L  G  H  L  V  L  L  H  *  L  L  K  T  W  K  K  T  H  R  F  S  S  E  F  S  K  H  S  K  T  T  R  F  S  C  V  L  T  L  K   : G  Q  L  L  S  S  M  K  Q  C  T  K  L  H  L  L  D  L  L  M  L  I  W  L  T  R  N  C  H  S  E  A  * :   L  I  I  Q  L  *  K  L  L  V  L  V  E  R  H  V  *  H  R  G  F  I  Q  H  W  Q  L  T  T  R  H  I  Y  S  R  L  T  T  E  R  S  Q  S  Q  L  R  V  W  M  H  G  V  W  A  K  L  R  Y  N  I  E  E  K  K  K  N  </first_frame>
            <second_frame>  Y  P  K  K  K  K  L  K  K  I  I  *  I  K  Y  H  Y  L  S  K  P  N  H  *  N  K  I  K  I  M  D  Y  S  S  N  K  S  S  R  W  A  L  P  V  I  L  V  C  F  F  V  I  L  L  S  N  N  V  V  F  A  S  H  K  V  F  I  H  L  Q  S  Q  N  A  V  N  V  H  T  V  H  R  T  G  Y  H  F  Q  P  E  K  H  W  I  N   : G  C  L  L  V  K  T  Y  N  R  S  Q  C :   T  N  V  F  Q  W  S  V  S  S  I  L  P  V  Q  P  K  W  F  S  M  G  *  H  C  L  G  S  F  R  F  K  R  L  D  Q  L  D  Q  F  R  T  C  N  L  P  I  K  A  I  *  S  I  R  Y  L  V  W  I  S  N  H  P  T  W  *  Q  A  S  H  L  V  H  R  N  H  R  C  Q  P  N  P  S  P  K  L  R  N  P  S  *  L  I  R  S  I  S  P  R  M  D  Q  A  R  Q  Q  P  I  N  Y  S  R  *  K  Y  Q  Q  D  Q  V  S  *  P  N  N  S  M  D  G  *  R  R  A  L  E  N  R  H  G  K  F  E  E  T  Q  Q  G  L  S  Y  N  V  *  E  Q  R  L  Y  E  M  G  Q  G  *  T  P  T  S  L  N  *  R  H  W  K  L  G  M  P  *  F  L  P  S  F  I  E  R  Y  *  W  V  G  S  I  R  *  G  T  Q  V  R  A  E  E  Q  Y  G  S  Y  S  I  *  V  L  Y  T  W  K  I  R  Y  E  K  R  *  V  R  S  R  S  R  F  C  R  *  F  E  G  I  E  T  R  L  R  *  L  L  R  I  E  V  I  L  R  S  K  Q  K  S  K  G  Y  L  G  L  V  *  *  I  R  Y  I  P  R  G  *  *  C  E  G  M  G  W  D  S  I  D  S  S  *  S  M  A  *  S  K  W  *  A  V  G  S  M  A  C  G  G  T  R  N  P  K  N  S  K  G  S  I  E  Q  Q  E  D  E  Q  W  G  E  D  *  S  Y  R  N  H  T  S  T   : G  *  C  *  S  D  I  L  I  C  K  F  G  *  G  R  V  I  *  S  *  M  E  *  Y  V  C  T  R  C  L  W  T  Q  G  C  R  C  S  R  W  A  W  A  I  W  S  C  Y  I  S  Y  *  K  L  G  R  K  H  T  G  F  L  P  S  F  Q  S  T  A  K  L  Q  G  S  L  V  F  *  R  *  K  :  V  N  S  *  V  Q  *  N  N  V  Q  S  F  I  C  W  I  C  *  C  *  F  G  *  Q  E  I  V  T  Q  K  L   : D  *  *  F  S  Y  R  N  F  W  C  W  W  K  D  M  Y  N  I  E  G  L  S  N  I  G  N  *  R  R  G  T  F  I  R  V  *  Q  R  N  G  A  N  H  N  *  E  F  G  C  M  E  Y  G  Q  S  *  D  T  I  L  K  K  K  K  R  I </second_frame>
            <third_frame>   I  Q  K  K  K  N  *  K  K  L  F  R  L  N  I  T  I  C  Q  S  P  I  I  K  I  K  *  K  L  W  I  I  H  L  I  K  V  L  V  G  L  C  Q  L  S  *  F  A  F  L  *  F  Y  Y  P  I  M  L  F  L  L  L  I  K  F  L  F  T  C  N  L  K  M  L  *  M  F  I  L  F  I  E  L  V  I  I  F  S  P  K  N  I  G  S  M  :  D  V  S  W  S  K  H  T  I  D  P  N   : A  P  M  Y  F  N  G  V  Y  H  L  F  Y  Q  Y  N  P  N  G  S  V  W  G  N  I  V  W  A  H  S  V  S  K  D  L  I  N  W  I  N  L  E  P  A  I  Y  P  S  K  P  F  D  Q  F  G  T  W  S  G  S  A  T  I  L  P  G  N  K  P  V  I  L  Y  T  G  I  I  D  A  N  Q  T  Q  V  Q  N  Y  A  I  P  A  N  L  S  D  P  Y  L  R  E  W  I  K  P  D  N  N  P  L  I  I  A  D  E  S  I  N  K  T  K  F  R  D  P  T  T  A  W  M  G  K  D  G  H  W  R  I  V  M  G  S  L  R  K  H  S  R  G  L  A  I  M  Y  R  S  K  D  F  M  K  W  V  K  A  K  H  P  L  H  S  T  N  G  T  G  N  W  E  C  P  D  F  Y  P  V  S  S  K  G  T  D  G  L  D  Q  Y  G  E  E  H  K  Y  V  L  K  N  S  M  D  L  T  R  F  E  Y  Y  T  L  G  K  Y  D  T  K  K  D  R  Y  V  P  D  P  D  S  V  D  S  L  K  G  L  R  L  D  Y  G  N  F  Y  A  S  K  S  F  Y  D  P  S  K  N  R  R  V  I  W  G  W  S  N  E  S  D  I  F  P  E  D  D  N  A  K  G  W  A  G  I  Q  L  I  P  R  K  V  W  L  D  P  S  G  K  Q  L  V  Q  W  P  V  E  E  L  E  T  L  R  T  Q  K  V  Q  L  S  N  K  K  M  N  N  G  E  K  I  E  V  T  G  I  T  P  A  Q  :  A  D  V  E  V  T  F  S  F  A  S  L  D  K  A  E  S  F  D  P  K  W  N  D  M  Y  A  Q  D  V  C  G  L  K  G  A  D  V  Q  G  G  L  G  P  F  G  L  A  T  L  A  T  E  N  L  E  E  N  T  P  V  F  F  R  V  F  K  A  Q  Q  N  Y  K  V  L  L  C  S  D  A  K  R :   S  T  L  K  F  N  E  T  M  Y  K  A  S  F  A  G  F  V  D  V  D  L  A  D  K  K  L  S  L  R  S  L  :  I  D  N  S  V  I  E  T  F  G  A  G  G  K  T  C  I  T  S  R  V  Y  P  T  L  A  I  N  D  E  A  H  L  F  A  F  N  N  G  T  E  P  I  T  I  E  S  L  D  A  W  S  M  G  K  A  K  I  Q  Y  *  R  K  K  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102960" stop="103019"/>
                    <exon start="103248" stop="103284"/>
                    <exon start="103618" stop="104636"/>
                    <exon start="105365" stop="105609"/>
                    <exon start="105708" stop="105804"/>
                    <exon start="105880" stop="106062"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1638</number_coding_nucleotides>
                  <number_encoded_amino_acids>546</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MFILFIELVIIFSPKNIGSMDVSWSKHTIDPNAPMYFNGVYHLFYQYNPNGSVWGNIVWAHSVSKDLINWINLEPAIYPSKPFDQFGTWSGSATILPGNKPVILYTGIIDANQTQVQNYAIPANLSDPYLREWIKPDNNPLIIADESINKTKFRDPTTAWMGKDGHWRIVMGSLRKHSRGLAIMYRSKDFMKWVKAKHPLHSTNGTGNWECPDFYPVSSKGTDGLDQYGEEHKYVLKNSMDLTRFEYYTLGKYDTKKDRYVPDPDSVDSLKGLRLDYGNFYASKSFYDPSKNRRVIWGWSNESDIFPEDDNAKGWAGIQLIPRKVWLDPSGKQLVQWPVEELETLRTQKVQLSNKKMNNGEKIEVTGITPAQADVEVTFSFASLDKAESFDPKWNDMYAQDVCGLKGADVQGGLGPFGLATLATENLEENTPVFFRVFKAQQNYKVLLCSDAKRSTLKFNETMYKASFAGFVDVDLADKKLSLRSLIDNSVIETFGAGGKTCITSRVYPTLAINDEAHLFAFNNGTEPITIESLDAWSMGKAKIQY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="106303" PGL_stop="107351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106303" e_stop="106320"/>
            <exon e_start="107013" e_stop="107351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="106303" e_stop="106320" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="106321" i_stop="107012" i_length="692"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="107013" e_stop="107351" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106303" stop="106320"/>
              <exon start="107013" stop="107351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225196" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTATTTATTTTATTGAT : TGGTAAAATCTACAAAACATTGAAAGGTATAAAATGTTTGGTAAGTCAGAATACATTAGCATAAATATTGGAGCTCACAGAGTCATTTGCTGACTCTTGCATATACATAATTCCTCCTTATCATTAACAAAGTAGAAATAAATATGATATATACTATGAAAACACAAATAAGTCAAACAAAAAAAAAGAGATGAACTTTGTAATGAATGGACACAGAAAACTGATCTGTTGCTGTTGCTCAGACAGACGAAACATGTTGCCTCAGCTGTGTCGAAAAAAAAGAAACAAGATGATGTGGGAACAAAGGTTCTTGAATTATGTTGGCAAGTCAGAATATCA</gDNA_template>
            <first_frame> C  I  Y  F  I  D  :  W  *  N  L  Q  N  I  E  R  Y  K  M  F  G  K  S  E  Y  I  S  I  N  I  G  A  H  R  V  I  C  *  L  L  H  I  H  N  S  S  L  S  L  T  K  *  K  *  I  *  Y  I  L  *  K  H  K  *  V  K  Q  K  K  R  D  E  L  C  N  E  W  T  Q  K  T  D  L  L  L  L  L  R  Q  T  K  H  V  A  S  A  V  S  K  K  K  K  Q  D  D  V  G  T  K  V  L  E  L  C  W  Q  V  R  I  S </first_frame>
            <second_frame>  V  F  I  L  L  I :   G  K  I  Y  K  T  L  K  G  I  K  C  L  V  S  Q  N  T  L  A  *  I  L  E  L  T  E  S  F  A  D  S  C  I  Y  I  I  P  P  Y  H  *  Q  S  R  N  K  Y  D  I  Y  Y  E  N  T  N  K  S  N  K  K  K  E  M  N  F  V  M  N  G  H  R  K  L  I  C  C  C  C  S  D  R  R  N  M  L  P  Q  L  C  R  K  K  R  N  K  M  M  W  E  Q  R  F  L  N  Y  V  G  K  S  E  Y   </second_frame>
            <third_frame>   Y  L  F  Y  *   : L  V  K  S  T  K  H  *  K  V  *  N  V  W  *  V  R  I  H  *  H  K  Y  W  S  S  Q  S  H  L  L  T  L  A  Y  T  *  F  L  L  I  I  N  K  V  E  I  N  M  I  Y  T  M  K  T  Q  I  S  Q  T  K  K  K  R  *  T  L  *  *  M  D  T  E  N  *  S  V  A  V  A  Q  T  D  E  T  C  C  L  S  C  V  E  K  K  E  T  R  *  C  G  N  K  G  S  *  I  M  L  A  S  Q  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107140" stop="107349"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSRNKYDIYYENTNKSNKKKEMNFVMNGHRKLICCCCSDRRNMLPQLCRKKRNKMMWEQRFLNYVGKSEY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="108347" PGL_stop="107193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108347" e_stop="107193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="108347" e_stop="107193" e_length="1155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108347" stop="107603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107995" stop="107596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107717" stop="107193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTGAAAATGAAAGTTGCTATCTTTTTGTTCCAACAAAAGATGCTTTGAATCTCCCTAATTTAGATGTGGTTTGCAGTATATTTCTATTTATATTCATAACATAACTTTGCTATGGCAAGAATGATGATAAACTATTAGATGTGTGAGTGGTGTATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCCTTCTTAAAGTACTTACAATAGAAATAAATGGAACTTTTTAATTTTGTGTTCTACAAATATGCTTCATTATTGCATTTGTACTAATTTTTCACTTGAAGTTGTAGCAAATTGTTAAGTTGAAATATTTATCTGATTTAGACCTTAACTGAAGTTACACGTCAGGATATAGCCCATACTTTTTGTGGTGTCACATCCGTTGTTGATTCTACTTTTTTCTAGTTGAGGTGGAATTTGTGCTATATTTAGCCTTTGCTATGGCAAGCATGATGAAAAACAATTAGATGTGCGAGTGGTGAATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATTCTGACTTGCATTTGTGATTCACTCTTTTATTTTTTGATTTACATGGTGTTCATTGATCCCTTAATTTTTGTTGGACCTAACTATGACTATAAAAGTTCATTATTAACATTACTAACAGAAGATTTTGATGTAAATTATTATTAAATATATAATTTGGCTTCTTTTGGCATTTATAGTTAATTTTAGGTAGGTATGGGAATGATGAATATCTGTTGTGTGAAGGGAGAACTCCCTGTTGAATGTTTACACTAACTGCTTATTGATATTCTGAGCTTTCTCTTTTGATATTGTGCATCCATAATGTATTTGTTTCCACTCTTTCTTTCTTCCTGGTGTATTTTTTGTGTGTAGGTGATCTGCTAATACACTTTGGTAATTCAATTTATGGCAAGAATGATGAGTCTATTAGATGTGCCAGGGTTTTTTCCCCAATGAGCTAAAACTTCTGAGGCTTATTGATATTCTGACTTGCCAACATAATTCAAGAACCTTTGTTCCCACATCATCTTGTTTCTTTTTTTTCGACACAGCTGAGGCAACATGTTTCGTCTGTCTGAGCAACAGCAACAGATCAGTTTTCTGTGTCCATTCATTACAAAGTTCATCTCTTTTTTT</gDNA_template>
            <first_frame> L  L  K  M  K  V  A  I  F  L  F  Q  Q  K  M  L  *  I  S  L  I  *  M  W  F  A  V  Y  F  Y  L  Y  S  *  H  N  F  A  M  A  R  M  M  I  N  Y  *  M  C  E  W  C  I  P  L  *  A  Q  S  S  R  L  I  D  I  L  T  C  L  L  K  V  L  T  I  E  I  N  G  T  F  *  F  C  V  L  Q  I  C  F  I  I  A  F  V  L  I  F  H  L  K  L  *  Q  I  V  K  L  K  Y  L  S  D  L  D  L  N  *  S  Y  T  S  G  Y  S  P  Y  F  L  W  C  H  I  R  C  *  F  Y  F  F  L  V  E  V  E  F  V  L  Y  L  A  F  A  M  A  S  M  M  K  N  N  *  M  C  E  W  *  I  P  L  *  A  Q  S  S  R  L  I  D  I  L  T  C  I  C  D  S  L  F  Y  F  L  I  Y  M  V  F  I  D  P  L  I  F  V  G  P  N  Y  D  Y  K  S  S  L  L  T  L  L  T  E  D  F  D  V  N  Y  Y  *  I  Y  N  L  A  S  F  G  I  Y  S  *  F  *  V  G  M  G  M  M  N  I  C  C  V  K  G  E  L  P  V  E  C  L  H  *  L  L  I  D  I  L  S  F  L  F  *  Y  C  A  S  I  M  Y  L  F  P  L  F  L  S  S  W  C  I  F  C  V  *  V  I  C  *  Y  T  L  V  I  Q  F  M  A  R  M  M  S  L  L  D  V  P  G  F  F  P  Q  *  A  K  T  S  E  A  Y  *  Y  S  D  L  P  T  *  F  K  N  L  C  S  H  I  I  L  F  L  F  F  R  H  S  *  G  N  M  F  R  L  S  E  Q  Q  Q  Q  I  S  F  L  C  P  F  I  T  K  F  I  S  F  F </first_frame>
            <second_frame>  C  *  K  *  K  L  L  S  F  C  S  N  K  R  C  F  E  S  P  *  F  R  C  G  L  Q  Y  I  S  I  Y  I  H  N  I  T  L  L  W  Q  E  *  *  *  T  I  R  C  V  S  G  V  F  L  Y  E  L  N  H  R  G  L  L  I  F  *  L  A  F  L  K  Y  L  Q  *  K  *  M  E  L  F  N  F  V  F  Y  K  Y  A  S  L  L  H  L  Y  *  F  F  T  *  S  C  S  K  L  L  S  *  N  I  Y  L  I  *  T  L  T  E  V  T  R  Q  D  I  A  H  T  F  C  G  V  T  S  V  V  D  S  T  F  F  *  L  R  W  N  L  C  Y  I  *  P  L  L  W  Q  A  *  *  K  T  I  R  C  A  S  G  E  F  L  Y  E  L  N  H  R  G  L  L  I  F  *  L  A  F  V  I  H  S  F  I  F  *  F  T  W  C  S  L  I  P  *  F  L  L  D  L  T  M  T  I  K  V  H  Y  *  H  Y  *  Q  K  I  L  M  *  I  I  I  K  Y  I  I  W  L  L  L  A  F  I  V  N  F  R  *  V  W  E  *  *  I  S  V  V  *  R  E  N  S  L  L  N  V  Y  T  N  C  L  L  I  F  *  A  F  S  F  D  I  V  H  P  *  C  I  C  F  H  S  F  F  L  P  G  V  F  F  V  C  R  *  S  A  N  T  L  W  *  F  N  L  W  Q  E  *  *  V  Y  *  M  C  Q  G  F  F  P  N  E  L  K  L  L  R  L  I  D  I  L  T  C  Q  H  N  S  R  T  F  V  P  T  S  S  C  F  F  F  F  D  T  A  E  A  T  C  F  V  C  L  S  N  S  N  R  S  V  F  C  V  H  S  L  Q  S  S  S  L  F   </second_frame>
            <third_frame>   V  E  N  E  S  C  Y  L  F  V  P  T  K  D  A  L  N  L  P  N  L  D  V  V  C  S  I  F  L  F  I  F  I  T  *  L  C  Y  G  K  N  D  D  K  L  L  D  V  *  V  V  Y  S  S  M  S  S  I  I  E  A  Y  *  Y  S  D  L  P  S  *  S  T  Y  N  R  N  K  W  N  F  L  I  L  C  S  T  N  M  L  H  Y  C  I  C  T  N  F  S  L  E  V  V  A  N  C  *  V  E  I  F  I  *  F  R  P  *  L  K  L  H  V  R  I  *  P  I  L  F  V  V  S  H  P  L  L  I  L  L  F  S  S  *  G  G  I  C  A  I  F  S  L  C  Y  G  K  H  D  E  K  Q  L  D  V  R  V  V  N  S  S  M  S  S  I  I  E  A  Y  *  Y  S  D  L  H  L  *  F  T  L  L  F  F  D  L  H  G  V  H  *  S  L  N  F  C  W  T  *  L  *  L  *  K  F  I  I  N  I  T  N  R  R  F  *  C  K  L  L  L  N  I  *  F  G  F  F  W  H  L  *  L  I  L  G  R  Y  G  N  D  E  Y  L  L  C  E  G  R  T  P  C  *  M  F  T  L  T  A  Y  *  Y  S  E  L  S  L  L  I  L  C  I  H  N  V  F  V  S  T  L  S  F  F  L  V  Y  F  L  C  V  G  D  L  L  I  H  F  G  N  S  I  Y  G  K  N  D  E  S  I  R  C  A  R  V  F  S  P  M  S  *  N  F  *  G  L  L  I  F  *  L  A  N  I  I  Q  E  P  L  F  P  H  H  L  V  S  F  F  S  T  Q  L  R  Q  H  V  S  S  V  *  A  T  A  T  D  Q  F  S  V  S  I  H  Y  K  V  H  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107398" stop="107195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MCQGFFPNELKLLRLIDILTCQHNSRTFVPTSSCFFFFDTAEATCFVCLSNSNRSVFCVHSLQSSSLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="109721" PGL_stop="109287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109721" e_stop="109287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109721" e_stop="109287" e_length="435"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109721" stop="109287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAAATTGTTTTTTTTGTATGTGAAGTGTGTATGATGCGTGGATTGATCAAAATGCTATTGGGTATGCATTAATTTCTCTTAAAGATGTGATTTTTGGAATATGTTGCAACATTTTGATCGATTGGAGCTATATAACAAAGTGTGTTGTGTATGGATTAATTTGTTTCATTTTGCGCCGCCCTTAAGATCGCCTTCCATTATGCTCCATGGAAGCGTTTTGAGTCATAGCTGCGCTATATTAATTGTATATATGCACACTCTTTTGTATGTACAATTGTATATATGAAAGGTGTGTTATATGCTGGAGTTTTCTCTTTAGGGTTTTCCTTTAGTGAGTCTCCTTTTGCCTCGCCTTATTTCAGGAGTCATATCCTTTTTTTTTGGTTTTGTCTTTCCCAATTGGGGATATAGAACCAAAAGATGTTTTGAATG</gDNA_template>
            <first_frame> L  K  I  V  F  F  V  C  E  V  C  M  M  R  G  L  I  K  M  L  L  G  M  H  *  F  L  L  K  M  *  F  L  E  Y  V  A  T  F  *  S  I  G  A  I  *  Q  S  V  L  C  M  D  *  F  V  S  F  C  A  A  L  K  I  A  F  H  Y  A  P  W  K  R  F  E  S  *  L  R  Y  I  N  C  I  Y  A  H  S  F  V  C  T  I  V  Y  M  K  G  V  L  Y  A  G  V  F  S  L  G  F  S  F  S  E  S  P  F  A  S  P  Y  F  R  S  H  I  L  F  F  W  F  C  L  S  Q  L  G  I  *  N  Q  K  M  F  *  M </first_frame>
            <second_frame>  *  K  L  F  F  L  Y  V  K  C  V  *  C  V  D  *  S  K  C  Y  W  V  C  I  N  F  S  *  R  C  D  F  W  N  M  L  Q  H  F  D  R  L  E  L  Y  N  K  V  C  C  V  W  I  N  L  F  H  F  A  P  P  L  R  S  P  S  I  M  L  H  G  S  V  L  S  H  S  C  A  I  L  I  V  Y  M  H  T  L  L  Y  V  Q  L  Y  I  *  K  V  C  Y  M  L  E  F  S  L  *  G  F  P  L  V  S  L  L  L  P  R  L  I  S  G  V  I  S  F  F  F  G  F  V  F  P  N  W  G  Y  R  T  K  R  C  F  E   </second_frame>
            <third_frame>   K  N  C  F  F  C  M  *  S  V  Y  D  A  W  I  D  Q  N  A  I  G  Y  A  L  I  S  L  K  D  V  I  F  G  I  C  C  N  I  L  I  D  W  S  Y  I  T  K  C  V  V  Y  G  L  I  C  F  I  L  R  R  P  *  D  R  L  P  L  C  S  M  E  A  F  *  V  I  A  A  L  Y  *  L  Y  I  C  T  L  F  C  M  Y  N  C  I  Y  E  R  C  V  I  C  W  S  F  L  F  R  V  F  L  *  *  V  S  F  C  L  A  L  F  Q  E  S  Y  P  F  F  L  V  L  S  F  P  I  G  D  I  E  P  K  D  V  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109636" stop="109433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCDFWNMLQHFDRLELYNKVCCVWINLFHFAPPLRSPSIMLHGSVLSHSCAILIVYMHTLLYVQLYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="113533" PGL_stop="110284"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113533" e_stop="113444"/>
            <exon e_start="113315" e_stop="113196"/>
            <exon e_start="113096" e_stop="113051"/>
            <exon e_start="112605" e_stop="112520"/>
            <exon e_start="111509" e_stop="111380"/>
            <exon e_start="111252" e_stop="110914"/>
            <exon e_start="110334" e_stop="110284"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.510"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113533" e_stop="113444" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113315" e_stop="113196" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113096" e_stop="113051" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112605" e_stop="112520" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111509" e_stop="111380" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111252" e_stop="110914" e_length="339"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110913" i_stop="110335" i_length="579"/>
          </intron>
          <exon e_serial="7" e_score="0.510">
            <gDNA_exon_boundary e_start="110334" e_stop="110284" e_length="51"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113533" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113509" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113506" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113505" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113504" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E347697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="111252" stop="111152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325916" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312789" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336598" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E304843" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="110334" stop="110284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688112" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312500" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E328964" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E339186" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E328300" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E326125" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E241611" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E284776" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E336882" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E327322" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E296899" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E279237" strand="-"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E311983" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E310002" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E282960" strand="+"/>
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          <PGS_line>
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              <exon start="113477" stop="113444"/>
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            <referenceDNA id="SGN-E313842" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E293906" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113261" stop="113196"/>
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              <exon start="111252" stop="111216"/>
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            <referenceDNA id="SGN-E341349" strand="+"/>
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          <PGS_line>
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              <exon start="111252" stop="110924"/>
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            <referenceDNA id="SGN-E252705" strand="-"/>
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          <PGS_line>
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              <exon start="111252" stop="110993"/>
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            <referenceDNA id="SGN-E341266" strand="+"/>
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          <PGS_line>
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              <exon start="111252" stop="110927"/>
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            <referenceDNA id="SGN-E302621" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113231" stop="113196"/>
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            <referenceDNA id="SGN-E251038" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113217" stop="113196"/>
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            <referenceDNA id="SGN-E284928" strand="-"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E250400" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111461" stop="111380"/>
              <exon start="111252" stop="110914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111415" stop="111380"/>
              <exon start="111252" stop="110951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111216" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111209" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTTGTGAGCTTCCACTGCAAATTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG : TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT : AAAAATGACATAAATAAACTAAACTTTTAACGATTGATGTACATGAATCTT</gDNA_template>
            <first_frame> I  F  V  S  F  H  C  K  L  G  F  L  Q  A  A  E  Y  L  *  I  F  S  L  S  S  S  A  E  A  M  :  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  D  F  *  T  L  C  S  *  A  L  L  V  S  K  P  P  S  F  *  V  C  Q  L  F  E  I  V  K  F  S  *  I  W  F  M  Q  A  N  C  W  I  N  L  Y  S  F  Y  L  H  N  S  V  S  Y  K  A  L  F  H  Y  G   : *  K  *  H  K  *  T  K  L  L  T  I  D  V  H  E  S  </first_frame>
            <second_frame>  F  L  *  A  S  T  A  N  *  G  F  F  K  L  L  S  I  S  E  F  S  H  Y  Q  A  Q  L  K  P  C :   R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L  :  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L  I  S  E  H  S  V  V  E  H  F  W  F  R  N  H  L  H  F  E  F  A  S  F  S  R  *  L  S  S  L  K  F  G  L  C  R  L  I  V  G  *  I  Y  T  L  F  I  F  T  I  L  L  V  I  K  L  Y  F  I  M  D  :  K  N  D  I  N  K  L  N  F  *  R  L  M  Y  M  N  L </second_frame>
            <third_frame>   F  C  E  L  P  L  Q  I  R  V  S  S  S  C  *  V  S  L  N  F  L  T  I  K  L  S  *  S  H   : V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y  W :   W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I  *  F  L  N  T  L  *  L  S  T  F  G  F  E  T  T  F  I  L  S  L  P  A  F  R  D  S  *  V  L  L  N  L  V  Y  A  G  *  L  L  D  K  F  I  L  F  L  S  S  Q  F  C  *  L  *  S  F  I  S  L  W  I :   K  M  T  *  I  N  *  T  F  N  D  *  C  T  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113476" stop="113444"/>
                    <exon start="113315" stop="113196"/>
                    <exon start="113096" stop="113051"/>
                    <exon start="112605" stop="112520"/>
                    <exon start="111509" stop="111380"/>
                    <exon start="111252" stop="111185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSLSSSAEAMSRRKTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113509" e_stop="113444"/>
            <exon e_start="113315" e_stop="113196"/>
            <exon e_start="113096" e_stop="113051"/>
            <exon e_start="112605" e_stop="112520"/>
            <exon e_start="111509" e_stop="111380"/>
            <exon e_start="111252" e_stop="110950"/>
            <exon e_start="110650" e_stop="110626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113509" e_stop="113444" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113315" e_stop="113196" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113096" e_stop="113051" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112605" e_stop="112520" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111509" e_stop="111380" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111252" e_stop="110950" e_length="303"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110949" i_stop="110651" i_length="299"/>
          </intron>
          <exon e_serial="7" e_score="0.600">
            <gDNA_exon_boundary e_start="110650" e_stop="110626" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113509" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113506" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113505" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113504" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113502" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113500" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113498" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113498" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279237" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113493" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113488" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113484" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113479" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113478" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113477" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113261" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113240" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113070" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110950"/>
              <exon start="110650" stop="110626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111415" stop="111380"/>
              <exon start="111252" stop="110951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111216" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111209" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG : TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACA : ACTAGTAAAAACAACTTTTACATGC</gDNA_template>
            <first_frame> L  G  F  L  Q  A  A  E  Y  L  *  I  F  S  L  S  S  S  A  E  A  M  :  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  D  F  *  T  L  C  S  *  A  L  L  V  S  K  P  P  S  F  *  V  C  Q  L  F  E  I  V  K  F  S  *  I  W  F  M  Q  A  N  C  W  I  N  L  Y  S  F  Y  L  H   : N  *  *  K  Q  L  L  H   </first_frame>
            <second_frame>  *  G  F  F  K  L  L  S  I  S  E  F  S  H  Y  Q  A  Q  L  K  P  C :   R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L  :  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L  I  S  E  H  S  V  V  E  H  F  W  F  R  N  H  L  H  F  E  F  A  S  F  S  R  *  L  S  S  L  K  F  G  L  C  R  L  I  V  G  *  I  Y  T  L  F  I  F  T  :  T  S  K  N  N  F  Y  M  </second_frame>
            <third_frame>   R  V  S  S  S  C  *  V  S  L  N  F  L  T  I  K  L  S  *  S  H   : V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y  W :   W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I  *  F  L  N  T  L  *  L  S  T  F  G  F  E  T  T  F  I  L  S  L  P  A  F  R  D  S  *  V  L  L  N  L  V  Y  A  G  *  L  L  D  K  F  I  L  F  L  S  S  Q :   L  V  K  T  T  F  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113476" stop="113444"/>
                    <exon start="113315" stop="113196"/>
                    <exon start="113096" stop="113051"/>
                    <exon start="112605" stop="112520"/>
                    <exon start="111509" stop="111380"/>
                    <exon start="111252" stop="111185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSLSSSAEAMSRRKTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="113509" e_stop="113444"/>
            <exon e_start="113315" e_stop="113196"/>
            <exon e_start="113096" e_stop="113051"/>
            <exon e_start="112605" e_stop="112520"/>
            <exon e_start="111509" e_stop="111380"/>
            <exon e_start="111252" e_stop="110970"/>
            <exon e_start="110374" e_stop="110312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.256" e_score="1.000"/>
          <exon-only e_score="0.556"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113509" e_stop="113444" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113443" i_stop="113316" i_length="128"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113315" e_stop="113196" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113096" e_stop="113051" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112605" e_stop="112520" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111509" e_stop="111380" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="111252" e_stop="110970" e_length="283"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.256">
            <gDNA_intron_boundary i_start="110969" i_stop="110375" i_length="595"/>
          </intron>
          <exon e_serial="7" e_score="0.556">
            <gDNA_exon_boundary e_start="110374" e_stop="110312" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113509" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113506" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113505" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113504" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113503" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113502" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113500" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111383"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113499" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113498" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113498" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279237" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113493" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113492" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113488" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113484" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113479" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113478" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113477" stop="113444"/>
              <exon start="113315" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113261" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113240" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111396" stop="111380"/>
              <exon start="111252" stop="110970"/>
              <exon start="110374" stop="110312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG : TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTT : GTAACAAATAATGACATGGATAAATTTTTTTTATAAAAAGAAAAATGACATAAATAAACTAAA</gDNA_template>
            <first_frame> L  G  F  L  Q  A  A  E  Y  L  *  I  F  S  L  S  S  S  A  E  A  M  :  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  D  F  *  T  L  C  S  *  A  L  L  V  S  K  P  P  S  F  *  V  C  Q  L  F  E  I  V  K  F  S  *  I  W  F  M  Q  A  N  C  W  I  N  L :   *  Q  I  M  T  W  I  N  F  F  Y  K  K  K  N  D  I  N  K  L   </first_frame>
            <second_frame>  *  G  F  F  K  L  L  S  I  S  E  F  S  H  Y  Q  A  Q  L  K  P  C :   R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L  :  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L  I  S  E  H  S  V  V  E  H  F  W  F  R  N  H  L  H  F  E  F  A  S  F  S  R  *  L  S  S  L  K  F  G  L  C  R  L  I  V  G  *  I   : C  N  K  *  *  H  G  *  I  F  F  I  K  R  K  M  T  *  I  N  *  </second_frame>
            <third_frame>   R  V  S  S  S  C  *  V  S  L  N  F  L  T  I  K  L  S  *  S  H   : V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y  W :   W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I  *  F  L  N  T  L  *  L  S  T  F  G  F  E  T  T  F  I  L  S  L  P  A  F  R  D  S  *  V  L  L  N  L  V  Y  A  G  *  L  L  D  K  F  :  V  T  N  N  D  M  D  K  F  F  L  *  K  E  K  *  H  K  *  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113476" stop="113444"/>
                    <exon start="113315" stop="113196"/>
                    <exon start="113096" stop="113051"/>
                    <exon start="112605" stop="112520"/>
                    <exon start="111509" stop="111380"/>
                    <exon start="111252" stop="111185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSLSSSAEAMSRRKTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
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          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.256" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
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          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
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          <intron i_serial="4" don_prob="0.989" acc_prob="1.000">
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          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
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          <intron i_serial="6" don_prob="0.000" acc_prob="0.256">
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          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
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              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113240" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGCCATG : TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAA : GTAACAAATAATGA</gDNA_template>
            <first_frame> L  G  F  L  Q  A  A  E  Y  L  *  I  F  S  L  S  S  S  A  E  A  M  :  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  D  F  *  T  L  C  S  *  A  L  L  V  S  K  P  P  S  F  *  V  C  Q  L  F  E  I  V  K  F  S  *  I  W  F  M  Q  A  N  C  W  I   : S  N  K  *  * </first_frame>
            <second_frame>  *  G  F  F  K  L  L  S  I  S  E  F  S  H  Y  Q  A  Q  L  K  P  C :   R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L  :  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L  I  S  E  H  S  V  V  E  H  F  W  F  R  N  H  L  H  F  E  F  A  S  F  S  R  *  L  S  S  L  K  F  G  L  C  R  L  I  V  G  *  :  V  T  N  N   </second_frame>
            <third_frame>   R  V  S  S  S  C  *  V  S  L  N  F  L  T  I  K  L  S  *  S  H   : V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y  W :   W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I  *  F  L  N  T  L  *  L  S  T  F  G  F  E  T  T  F  I  L  S  L  P  A  F  R  D  S  *  V  L  L  N  L  V  Y  A  G  *  L  L  D  K :   *  Q  I  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113476" stop="113444"/>
                    <exon start="113315" stop="113196"/>
                    <exon start="113096" stop="113051"/>
                    <exon start="112605" stop="112520"/>
                    <exon start="111509" stop="111380"/>
                    <exon start="111252" stop="111185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSLSSSAEAMSRRKTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="113369" e_stop="113196"/>
            <exon e_start="113096" e_stop="113051"/>
            <exon e_start="112605" e_stop="112520"/>
            <exon e_start="111509" e_stop="111380"/>
            <exon e_start="111252" e_stop="110914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.008" acc_prob="0.995" e_score="0.989"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="113369" e_stop="113196" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.008" acc_prob="0.995">
            <gDNA_intron_boundary i_start="113195" i_stop="113097" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113096" e_stop="113051" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113050" i_stop="112606" i_length="445"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112605" e_stop="112520" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111509" e_stop="111380" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111252" e_stop="110914" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113369" stop="113196"/>
              <exon start="113096" stop="113080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113262" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113261" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="111216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113250" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252705" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113240" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113238" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113231" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251038" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113217" stop="113196"/>
              <exon start="113096" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113080" stop="113051"/>
              <exon start="112605" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111461" stop="111380"/>
              <exon start="111252" stop="110914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111415" stop="111380"/>
              <exon start="111252" stop="110951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111216" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111209" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</gDNA_template>
            <first_frame> F  D  *  F  E  L  K  N  C  M  F  D  E  I  V  C  L  *  S  R  R  K  T  R  E  P  K  E  E  T  V  T  L  G  P  A  T  R  E  G  E  L  V  F  G  V  A  H  I  F  A  S  F  N  D  T  F  I  :  H  V  T  D  L  S  G  R  E  T  M  V  R  I  T   : G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  D  F  *  T  L  C  S  *  A  L  L  V  S  K  P  P  S  F  *  V  C  Q  L  F  E  I  V  K  F  S  *  I  W  F  M  Q  A  N  C  W  I  N  L  Y  S  F  Y  L  H  N  S  V  S  Y  K  A  L  F  H  Y  G  </first_frame>
            <second_frame>  L  I  N  L  N  *  K  T  V  C  S  M  K  L  F  V  C  S  R  G  E  R  P  G  S  L  R  K  R  L  L  H  L  D  Q  Q  R  G  K  V  N  W  C  S  V  L  H  T  F  L  H  R  S  M  I  H  S  F :   T  L  L  I  C  L  E  E  K  L  W  F  A  L  L  :  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L  I  S  E  H  S  V  V  E  H  F  W  F  R  N  H  L  H  F  E  F  A  S  F  S  R  *  L  S  S  L  K  F  G  L  C  R  L  I  V  G  *  I  Y  T  L  F  I  F  T  I  L  L  V  I  K  L  Y  F  I  M  D </second_frame>
            <third_frame>   *  L  I  *  I  E  K  L  Y  V  R  *  N  C  L  F  V  V  E  E  K  D  Q  G  A  *  G  R  D  C  Y  T  W  T  S  N  E  G  R  *  I  G  V  R  C  C  T  H  F  C  I  V  Q  *  Y  I  H   : S  R  Y  *  F  V  W  K  R  N  Y  G  S  H  Y  W :   W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I  *  F  L  N  T  L  *  L  S  T  F  G  F  E  T  T  F  I  L  S  L  P  A  F  R  D  S  *  V  L  L  N  L  V  Y  A  G  *  L  L  D  K  F  I  L  F  L  S  S  Q  F  C  *  L  *  S  F  I  S  L  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113315" stop="113196"/>
                    <exon start="113096" stop="113051"/>
                    <exon start="112605" stop="112520"/>
                    <exon start="111509" stop="111380"/>
                    <exon start="111252" stop="111185"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRRKTREPKEETVTLGPATREGELVFGVAHIFASFNDTFIHVTDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="112610" e_stop="112520"/>
            <exon e_start="111509" e_stop="111380"/>
            <exon e_start="111252" e_stop="110914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="0.978"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="112610" e_stop="112520" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="112519" i_stop="111510" i_length="1010"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111509" e_stop="111380" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="111379" i_stop="111253" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111252" e_stop="110914" e_length="339"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112610" stop="112520"/>
              <exon start="111509" stop="111380"/>
              <exon start="111252" stop="110974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111461" stop="111380"/>
              <exon start="111252" stop="110914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111415" stop="111380"/>
              <exon start="111252" stop="110951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111216" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111209" stop="110950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGGTGGAATGAAGGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGTGTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGGAGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCGTTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCGCAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATGTTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATTTGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGTTTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTGGATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTATGGAT</gDNA_template>
            <first_frame> C  R  W  N  E  G  E  G  *  Q  R  *  V  F  S  V  C  C  Y  A  C  S  S  G  C  V  T  A  M  Q   : G  T  W  N  *  C  S  S  H  *  A  P  S  Y  R  R  Q  Q  D  Q  D  S  W  S  W  C  P  V  R  S  *  S  F  G  S  F  W  H  E  N  W  T  Y  R :   G  C  Y  S  N  S  H  R  *  Y  S  Q  K  G  W  *  K  G  K  E  A  V  K  T  L  S  L  F  C  S  M  L  Q  I  G  G  K  Y  C  C  R  K  M  Q  L  S  I  S  I  Y  I  *  F  L  N  T  L  *  L  S  T  F  G  F  E  T  T  F  I  L  S  L  P  A  F  R  D  S  *  V  L  L  N  L  V  Y  A  G  *  L  L  D  K  F  I  L  F  L  S  S  Q  F  C  *  L  *  S  F  I  S  L  W   </first_frame>
            <second_frame>  A  G  G  M  K  V  K  A  D  R  D  E  S  S  P  Y  A  A  M  L  A  A  Q  D  V  S  Q  R  C  K  :  E  L  G  I  N  A  L  H  I  K  L  R  A  T  G  G  N  K  T  K  T  P  G  P  G  A  Q  S  A  L  R  A  L  A  R  S  G  M  K  I  G  R  I   : E  D  V  T  P  I  P  T  D  S  T  R  R  K  G  G  R  R  G  R  R  L  *  R  L  F  L  F  S  A  A  C  C  K  L  E  E  N  I  V  V  E  K  C  S  F  R  Y  L  F  T  F  D  F  *  T  L  C  S  *  A  L  L  V  S  K  P  P  S  F  *  V  C  Q  L  F  E  I  V  K  F  S  *  I  W  F  M  Q  A  N  C  W  I  N  L  Y  S  F  Y  L  H  N  S  V  S  Y  K  A  L  F  H  Y  G  </second_frame>
            <third_frame>   Q  V  E  *  R  *  R  L  T  E  M  S  L  L  R  M  L  L  C  L  Q  L  R  M  C  H  S  D  A  R :   N  L  E  L  M  L  F  T  L  S  S  E  L  Q  E  A  T  R  P  R  L  L  V  L  V  P  S  P  L  L  E  L  W  L  V  L  A  *  K  L  D  V  *  :  R  M  L  L  Q  F  P  P  I  V  L  A  E  R  V  V  E  G  E  G  G  C  E  D  S  F  S  F  L  Q  H  V  A  N  W  R  K  I  L  L  S  K  N  A  A  F  D  I  Y  L  H  L  I  S  E  H  S  V  V  E  H  F  W  F  R  N  H  L  H  F  E  F  A  S  F  S  R  *  L  S  S  L  K  F  G  L  C  R  L  I  V  G  *  I  Y  T  L  F  I  F  T  I  L  L  V  I  K  L  Y  F  I  M  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112609" stop="112520"/>
                    <exon start="111509" stop="111380"/>
                    <exon start="111252" stop="111185"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGGMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="23" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111252" stop="111019"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMLLQFPPIVLAERVVEGEGGCEDSFSFLQHVANWRKILLSKNAAFDIYLHLISEHSVVEHFWFRNHLHFEFASFSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="110314" PGL_stop="111227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110314" e_stop="110340"/>
            <exon e_start="110967" e_stop="111195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.704"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.704">
            <gDNA_exon_boundary e_start="110314" e_stop="110340" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110341" i_stop="110966" i_length="626"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="110967" e_stop="111195" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110314" stop="110340"/>
              <exon start="110967" stop="111195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301654" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTTTATTTATGTCATTTTTCTTTTT : TATAAATTTATCCAACAATTAGCCTGCATAAACCAAATTTAAGAGAACTTAACTATCTCGAAAAGCTGGCAAACTCAAAATGAAGGTGGTTTCGAAACCAAAAGTGCTCAACTACAGAGTGTTCAGAAATCAAATGTAAATAGATATCGAAAGCTGCATTTTTCGACAACAATATTTTCCTCCAATTTGCAACATGCTGCAGAAAAGAGAAAGAGTCTTCACAGCCTCC</gDNA_template>
            <first_frame> *  F  I  Y  V  I  F  L  F  :  Y  K  F  I  Q  Q  L  A  C  I  N  Q  I  *  E  N  L  T  I  S  K  S  W  Q  T  Q  N  E  G  G  F  E  T  K  S  A  Q  L  Q  S  V  Q  K  S  N  V  N  R  Y  R  K  L  H  F  S  T  T  I  F  S  S  N  L  Q  H  A  A  E  K  R  K  S  L  H  S  L  </first_frame>
            <second_frame>  S  L  F  M  S  F  F  F  F :   I  N  L  S  N  N  *  P  A  *  T  K  F  K  R  T  *  L  S  R  K  A  G  K  L  K  M  K  V  V  S  K  P  K  V  L  N  Y  R  V  F  R  N  Q  M  *  I  D  I  E  S  C  I  F  R  Q  Q  Y  F  P  P  I  C  N  M  L  Q  K  R  E  R  V  F  T  A  S </second_frame>
            <third_frame>   V  Y  L  C  H  F  S  F   : L  *  I  Y  P  T  I  S  L  H  K  P  N  L  R  E  L  N  Y  L  E  K  L  A  N  S  K  *  R  W  F  R  N  Q  K  C  S  T  T  E  C  S  E  I  K  C  K  *  I  S  K  A  A  F  F  D  N  N  I  F  L  Q  F  A  T  C  C  R  K  E  K  E  S  S  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0168F14.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110316" e_stop="110340"/>
            <exon e_start="110947" e_stop="111227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.720"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.720">
            <gDNA_exon_boundary e_start="110316" e_stop="110340" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110341" i_stop="110946" i_length="606"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="110947" e_stop="111227" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110316" stop="110340"/>
              <exon start="110947" stop="111227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224691" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTTATGTCATTTTTCTTTTT : AATTGTGAAGATAAAAAGAGTATAAATTTATCCAACAATTAGCCTGCATAAACCAAATTTAAGAGAACTTAACTATCTCGAAAAGCTGGCAAACTCAAAATGAAGGTGGTTTCGAAACCAAAAGTGCTCAACTACAGAGTGTTCAGAAATCAAATGTAAATAGATATCGAAAGCTGCATTTTTCGACAACAATATTTTCCTCCAATTTGCAACATGCTGCAGAAAAGAGAAAGAGTCTTCACAGCCTCCTTCCCCTTCTACCACCCTTTCTGCGAGTACTA</gDNA_template>
            <first_frame> V  Y  L  C  H  F  S  F   : *  L  *  R  *  K  E  Y  K  F  I  Q  Q  L  A  C  I  N  Q  I  *  E  N  L  T  I  S  K  S  W  Q  T  Q  N  E  G  G  F  E  T  K  S  A  Q  L  Q  S  V  Q  K  S  N  V  N  R  Y  R  K  L  H  F  S  T  T  I  F  S  S  N  L  Q  H  A  A  E  K  R  K  S  L  H  S  L  L  P  L  L  P  P  F  L  R  V  L </first_frame>
            <second_frame>  F  I  Y  V  I  F  L  F  :  N  C  E  D  K  K  S  I  N  L  S  N  N  *  P  A  *  T  K  F  K  R  T  *  L  S  R  K  A  G  K  L  K  M  K  V  V  S  K  P  K  V  L  N  Y  R  V  F  R  N  Q  M  *  I  D  I  E  S  C  I  F  R  Q  Q  Y  F  P  P  I  C  N  M  L  Q  K  R  E  R  V  F  T  A  S  F  P  F  Y  H  P  F  C  E  Y   </second_frame>
            <third_frame>   L  F  M  S  F  F  F  L :   I  V  K  I  K  R  V  *  I  Y  P  T  I  S  L  H  K  P  N  L  R  E  L  N  Y  L  E  K  L  A  N  S  K  *  R  W  F  R  N  Q  K  C  S  T  T  E  C  S  E  I  K  C  K  *  I  S  K  A  A  F  F  D  N  N  I  F  L  Q  F  A  T  C  C  R  K  E  K  E  S  S  Q  P  P  S  P  S  T  T  L  S  A  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="+"/>
                <serials PGL_serial="24" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111009" stop="111227"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENLTISKSWQTQNEGGFETKSAQLQSVQKSNVNRYRKLHFSTTIFSSNLQHAAEKRKSLHSLLPLLPPFLRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="116478" PGL_stop="114390"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115968" e_stop="115880"/>
            <exon e_start="115735" e_stop="115602"/>
            <exon e_start="115187" e_stop="115004"/>
            <exon e_start="114406" e_stop="114390"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.647"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="115968" e_stop="115880" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115879" i_stop="115736" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115735" e_stop="115602" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="115601" i_stop="115188" i_length="414"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115187" e_stop="115004" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115003" i_stop="114407" i_length="597"/>
          </intron>
          <exon e_serial="4" e_score="0.647">
            <gDNA_exon_boundary e_start="114406" e_stop="114390" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115968" stop="115880"/>
              <exon start="115735" stop="115602"/>
              <exon start="115187" stop="115004"/>
              <exon start="114406" stop="114390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115696" stop="115602"/>
              <exon start="115187" stop="115004"/>
              <exon start="114406" stop="114390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAG : GTAATGTGCCCTACATGTCTGTGTACTGGGATGGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCATTTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGTTATTATATATAGAATATCCTTTGGTTATGAAG : GTGAAAAAAGAAAGTAA</gDNA_template>
            <first_frame> S  G  S  H  L  S  P  H  A  N  R  S  *  Q  C  S  P  T  R  E  E  K  V  Q  I  L  L  W  K  W :   V  L  G  M  C  T  M  F  S  K  R  *  M  P  L  Y  *  T  N  F  S  E  W  F  L  S  I  V  A  C  T  N  S  *  K  M  C  E  L  L  R  D  W  K   : G  N  V  P  Y  M  S  V  Y  W  D  G  D  G  K  *  T  *  P  S  N  R  S  I  *  L  S  T  N  S  H  F  V  T  Y  I  H  T  K  N  N  W  S  F  W  F  C  Y  K  H  S  Y  Y  I  *  N  I  L  W  L  *  R :   *  K  K  K  V  </first_frame>
            <second_frame>  V  G  V  I  S  A  L  M  L  I  E  A  N  N  V  V  Q  Q  E  K  K  K  C  K  Y  C  Y  G  S   : G  Y  L  A  C  A  R  C  S  A  S  G  K  C  L  Y  T  E  P  I  S  V  N  G  S  Y  Q  S  L  R  A  P  T  L  K  R  C  A  N  C  S  G  T  G  K  :  V  M  C  P  T  C  L  C  T  G  M  V  M  A  S  E  H  D  L  R  I  D  P  F  D  *  V  Q  I  L  I  L  *  L  I  F  I  Q  K  I  I  G  H  F  G  F  V  I  S  I  V  I  I  Y  R  I  S  F  G  Y  E   : G  E  K  R  K  * </second_frame>
            <third_frame>   W  E  S  S  Q  P  S  C  *  *  K  L  T  M  *  S  N  K  R  R  K  S  A  N  I  A  M  E  V  :  G  T  W  H  V  H  D  V  Q  Q  A  V  N  A  S  I  L  N  Q  F  Q  *  M  V  L  I  N  R  C  V  H  Q  L  L  K  D  V  R  I  A  P  G  L  E  R :   *  C  A  L  H  V  C  V  L  G  W  *  W  Q  V  N  M  T  F  E  *  I  H  L  I  K  Y  K  F  S  F  C  N  L  Y  S  Y  K  K  *  L  V  I  L  V  L  L  *  A  *  L  L  Y  I  E  Y  P  L  V  M  K  :  V  K  K  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115967" stop="115880"/>
                    <exon start="115735" stop="115602"/>
                    <exon start="115187" stop="115110"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGVISALMLIEANNVVQQEKKKCKYCYGSGYLACARCSASGKCLYTEPISVNGSYQSLRAPTLKRCANCSGTGKVMCPTCLCTGMVMASEHDLRIDPFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="116478" e_stop="116430"/>
            <exon e_start="116294" e_stop="116218"/>
            <exon e_start="116007" e_stop="115880"/>
            <exon e_start="115735" e_stop="115457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.477" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116478" e_stop="116430" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="116429" i_stop="116295" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116294" e_stop="116218" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.477">
            <gDNA_intron_boundary i_start="116217" i_stop="116008" i_length="210"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116007" e_stop="115880" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115879" i_stop="115736" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="115735" e_stop="115457" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116478" stop="116430"/>
              <exon start="116294" stop="116218"/>
              <exon start="116007" stop="115880"/>
              <exon start="115735" stop="115457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA : CTTGAGCTGAAATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCAATTGAG : CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTCAGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATATTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTATACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAGATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGCACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATATCTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG</gDNA_template>
            <first_frame> F  I  Y  S  W  D  Y  G  L  R  W  I  T  C  P  S   : T  *  A  E  I  R  S  R  R  H  L  I  R  R  F  Y  T  *  H  A  F  A  Y  A  I  E  :  P  G  R  P  H  S  G  V  L  F  R  R  G  S  G  S  H  L  S  P  H  A  N  R  S  *  Q  C  S  P  T  R  E  E  K  V  Q  I  L  L  W  K  W :   V  L  G  M  C  T  M  F  S  K  R  *  M  P  L  Y  *  T  N  F  S  E  W  F  L  S  I  V  A  C  T  N  S  *  K  M  C  E  L  L  R  D  W  K  G  M  K  H  D  H  L  P  T  S  C  T  Q  Q  S  Y  Y  I  S  S  I  S  S  N  F  T  R  K  N  K  Y  L  C  L  L  Q  S  V  P  *  S  S  I  S  K  M  C  D   </first_frame>
            <second_frame>  S  F  I  A  G  I  M  V  F  G  G  L  L  A  P  V  :  L  E  L  K  L  G  L  G  G  T  S  Y  E  D  F  I  R  N  M  H  L  P  M  Q  L  S :   Q  V  D  P  I  V  A  S  F  S  G  G  A  V  G  V  I  S  A  L  M  L  I  E  A  N  N  V  V  Q  Q  E  K  K  K  C  K  Y  C  Y  G  S   : G  Y  L  A  C  A  R  C  S  A  S  G  K  C  L  Y  T  E  P  I  S  V  N  G  S  Y  Q  S  L  R  A  P  T  L  K  R  C  A  N  C  S  G  T  G  K  V  *  N  M  I  I  S  L  L  H  A  L  N  S  H  I  I  S  V  Q  *  V  V  T  L  Q  E  K  T  N  I  C  V  C  Y  N  P  S  H  S  R  A  S  Q  K  C  V  T  </second_frame>
            <third_frame>   H  L  *  L  G  L  W  S  S  V  D  Y  L  P  Q  Y :   L  S  *  N  *  V  *  E  A  P  H  T  K  I  L  Y  V  T  C  I  C  L  C  N  *   : A  R  S  T  P  *  W  R  P  F  Q  A  G  Q  W  E  S  S  Q  P  S  C  *  *  K  L  T  M  *  S  N  K  R  R  K  S  A  N  I  A  M  E  V  :  G  T  W  H  V  H  D  V  Q  Q  A  V  N  A  S  I  L  N  Q  F  Q  *  M  V  L  I  N  R  C  V  H  Q  L  L  K  D  V  R  I  A  P  G  L  E  R  Y  E  T  *  S  S  P  Y  F  M  H  S  T  V  I  L  Y  Q  F  N  K  *  *  L  Y  K  K  K  Q  I  S  V  S  V  T  I  R  P  I  V  E  H  L  K  N  V  *  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0168F14.3" strand="-"/>
                <serials PGL_serial="25" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116477" stop="116430"/>
                    <exon start="116294" stop="116218"/>
                    <exon start="116007" stop="115880"/>
                    <exon start="115735" stop="115596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFIAGIMVFGGLLAPVLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVVQQEKKKCKYCYGSGYLACARCSASGKCLYTEPISVNGSYQSLRAPTLKRCANCSGTGKV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 507 chains have been computed
$ 
$ memory statistics:
$ 2782352 bytes spliced alignments in total
$ 356 spliced alignments have been stored
$ 7815 bytes was the average size of a spliced alignment
$ 44864 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1794 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 562 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:56:52
-->
