##gff-version 3
# This output was generated with AUGUSTUS (version 2.0.2).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de).
# Please cite: Mario Stanke and Stephan Waack (2003) "Gene prediction with a hidden Markov model and
# a new intron submodel", Bioinformatics, Vol. 19 Suppl. 2, ii215-ii225
# No extrinsic information on sequences given.
# Initialising the parameters ...
# human version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C09SLe0076N09-R5HuC/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequence and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 139368, name = C09SLe0076N09.1) -----
#
# Constraints/Hints:
# (none)
# Predicted genes for sequence number 1 on both strands
###
C09SLe0076N09.1	AUGUSTUS_ab_initio	gene	4202	10135	1	+	.	ID=g1
C09SLe0076N09.1	AUGUSTUS_ab_initio	transcript	4202	10135	.	+	.	ID=g1.t1;Parent=g1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	4202	4494	.	+	1	ID=g1.t1.cds;Parent=g1.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	4876	4957	.	+	2	ID=g1.t1.cds;Parent=g1.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	10102	10135	.	+	1	ID=g1.t1.cds;Parent=g1.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	stop_codon	10133	10135	.	+	0	Parent=g1.t1
# protein sequence = [TSQSFTSIINEKEKTNLSIDQLEESENTSNRTNIYEAEVVDRWLEIHGQDDWVGMLDPMDPLLRSELIRYGEMAQACY
# DAFDFDPYSKYCGSCKFPRHNIPCPDPNVKVESGFLDLYTDKDESCSRRGRRSAARY]
###
###
C09SLe0076N09.1	AUGUSTUS_ab_initio	gene	15575	20784	1	-	.	ID=g2
C09SLe0076N09.1	AUGUSTUS_ab_initio	transcript	15575	20784	.	-	.	ID=g2.t1;Parent=g2
C09SLe0076N09.1	AUGUSTUS_ab_initio	stop_codon	15575	15577	.	-	0	Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	15575	15598	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	16579	16713	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	16803	16973	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	18526	18804	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	18889	19114	.	-	1	ID=g2.t1.cds;Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	20408	20784	.	-	0	ID=g2.t1.cds;Parent=g2.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	start_codon	20782	20784	.	-	0	Parent=g2.t1
# protein sequence = [MATSLSSPKLSTTLSSPTFHSLYKTKFSNFSLLSLSNPIKPLRFNFLSHTRTSSLSYGRRFTTPRAESSNGAETPRHY
# DFDLFTIGAGSGGVRASRFASNFGASVAVCELPFSTISSDSTGGVGGTCVLRGCVPKKLLVYASKYSHEFEESCGFGWNYEAEPKHDWSTLIANKNAE
# LQRLTGIYKNILKNADVTLIEGRGKVVDPHTVDVDGKLYSAKNILISVGGRPFIPDIPGSEYAIDSDAALDLPTKPDKIAIVGGGYIALEFAGIFNGL
# KSEVHVFIRQKKVLRGFDEEAIKEYGDVDVYTANFRPLKATLSGLPDRVFMKLVVCAKSSKVLGLHMCGDDAPEIVQGFAVAVKAGLTKADFDTTVGI
# HPTAAEEFVTMRTPTRKIRSSPSEALLIYAT]
###
###
C09SLe0076N09.1	AUGUSTUS_ab_initio	gene	29281	31386	1	+	.	ID=g3
C09SLe0076N09.1	AUGUSTUS_ab_initio	transcript	29281	31386	.	+	.	ID=g3.t1;Parent=g3
C09SLe0076N09.1	AUGUSTUS_ab_initio	start_codon	29281	29283	.	+	0	Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	29281	29422	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	29532	29653	.	+	2	ID=g3.t1.cds;Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	30611	30685	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	30855	31082	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	31166	31210	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	31324	31386	.	+	0	ID=g3.t1.cds;Parent=g3.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	stop_codon	31384	31386	.	+	0	Parent=g3.t1
# protein sequence = [MDDNVLPVVEELQRRLPLPAISLGEGEDDDQSVVNGTRNEMQTIEPTEFPFEFRALEVALEGVCSYLDTQTRELETAA
# YPALDELTSKISSRNLDRVRKLKSAMTRLTSRVQKVRDDLEQLLEDDGDMADLYLSRKLVAGVSSPLSGQVAPYWSPDTFSIRSKLLSKASRISGITH
# EETDVEELEMLLEAYFVQIESTMNKLTTLREYIDDTEDYINIQVTTPR]
###
###
C09SLe0076N09.1	AUGUSTUS_ab_initio	gene	41839	55416	1	-	.	ID=g4
C09SLe0076N09.1	AUGUSTUS_ab_initio	transcript	41839	55416	.	-	.	ID=g4.t1;Parent=g4
C09SLe0076N09.1	AUGUSTUS_ab_initio	stop_codon	41839	41841	.	-	0	Parent=g4.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	41839	42006	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	48413	48490	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	48735	48813	.	-	1	ID=g4.t1.cds;Parent=g4.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	49107	49268	.	-	1	ID=g4.t1.cds;Parent=g4.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	55409	55416	.	-	0	ID=g4.t1.cds;Parent=g4.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	start_codon	55414	55416	.	-	0	Parent=g4.t1
# protein sequence = [MERSAMDAEIMKYVSETYPKGICSVYCTKGKDVEEPGFDFELVVVISAARHSPQNFCNGSWRSIWNIEFKDDIQSVEV
# RGEMQVGAHYFEEGNVQLDAKHKCKDTTLIQIENHLVLVVEEGEEEVVGMKVLLEDRRKALGVEWKMQVPKAGAKEDLVPSLVEKV]
###
###
C09SLe0076N09.1	AUGUSTUS_ab_initio	gene	75450	78434	1	+	.	ID=g5
C09SLe0076N09.1	AUGUSTUS_ab_initio	transcript	75450	78434	.	+	.	ID=g5.t1;Parent=g5
C09SLe0076N09.1	AUGUSTUS_ab_initio	start_codon	75450	75452	.	+	0	Parent=g5.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	75450	75463	.	+	0	ID=g5.t1.cds;Parent=g5.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	77516	77843	.	+	1	ID=g5.t1.cds;Parent=g5.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	77985	78434	.	+	0	ID=g5.t1.cds;Parent=g5.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	stop_codon	78432	78434	.	+	0	Parent=g5.t1
# protein sequence = [MSSYVPDHNLQDVRAKVFPYKRRKVNAPEIVTSVALPVRRKERSLSSLVVSTPRVSSQTGITGRRTKSVARKALCGSN
# FSIEKSLKNEDGSGEDQLDSSSSLETLNKFTQNMRLNSSSAEPSSHPTPDKETENGSQQWEGKVDLWKPLNCLVEAANRSKSSRFTSDGSTAKSEGRH
# SHDREGHVRKTKVKEHGQKSKIKDDNNSDPAPPEFDKPKKSRRIRQKKASFYGEFDISPQTFLDATTARCEKRIYPIWFSLVASEDQ]
###
###
C09SLe0076N09.1	AUGUSTUS_ab_initio	gene	86341	86826	1	-	.	ID=g6
C09SLe0076N09.1	AUGUSTUS_ab_initio	transcript	86341	86826	.	-	.	ID=g6.t1;Parent=g6
C09SLe0076N09.1	AUGUSTUS_ab_initio	stop_codon	86341	86343	.	-	0	Parent=g6.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	CDS	86341	86826	.	-	0	ID=g6.t1.cds;Parent=g6.t1
C09SLe0076N09.1	AUGUSTUS_ab_initio	start_codon	86824	86826	.	-	0	Parent=g6.t1
# protein sequence = [MLTVYARRRPWRELLTHPSSYTLPISVSDFASRVKRNLSYFRVNYAMIVLVVLFLSILWHPISMIVFLIVSVGWYFLY
# FHRDEPLMVFNRTIDDRIVLVVLGVVTVVSLVLTHVWLNVLVSIVVGIVLIFLHATFRITENLFLEEEDAADGGLHSFVGTYV]
###
# command line:
# /usr/bin/augustus.real --species=human --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C09SLe0076N09-R5HuC/AUGUSTUS_ab_initio/seq_with_defline_removed