psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 38 1 0 0 1 21 0 0 + SGN-E203450 483 94 154 C09SLe0066M20.1 108242 37450 37489 2 9,30, 94,124, 37450,37459, 476 6 0 0 3 13 5 1089 + SGN-E205410 495 0 495 C09SLe0066M20.1 108242 85168 86739 6 64,30,11,121,73,183, 0,71,105,116,237,312, 85168,85238,85274,85370,86231,86556, 41 0 0 0 0 0 2 4 - SGN-E211649 402 339 380 C09SLe0066M20.1 108242 37459 37504 3 28,8,5, 22,50,58, 37459,37490,37499, 228 2 0 2 0 0 2 227 + SGN-E213507 603 371 603 C09SLe0066M20.1 108242 0 459 3 131,96,5, 371,502,598, 0,357,454, 645 5 0 2 1 1 1 1 - SGN-E214439 653 0 653 C09SLe0066M20.1 108242 26817 27470 3 367,85,200, 0,367,453, 26817,27185,27270, 385 5 0 0 0 0 1 210 + SGN-E214935 522 0 390 C09SLe0066M20.1 108242 87182 87782 2 153,237, 0,153, 87182,87545, 335 4 0 0 1 1 2 103 - SGN-E219141 359 19 359 C09SLe0066M20.1 108242 427 869 4 27,65,139,108, 0,28,93,232, 427,454,608,761, 392 5 0 1 0 0 2 103 - SGN-E219563 414 16 414 C09SLe0066M20.1 108242 371 872 3 148,139,111, 0,148,287, 371,608,761, 324 9 0 0 0 0 0 0 + SGN-E221336 358 25 358 C09SLe0066M20.1 108242 2656 2989 1 333, 25, 2656, 198 7 0 0 0 0 1 14 - SGN-E221527 218 13 218 C09SLe0066M20.1 108242 685 904 2 62,143, 0,62, 685,761, 236 14 0 0 0 0 1 14 - SGN-E221815 269 19 269 C09SLe0066M20.1 108242 630 894 2 117,133, 0,117, 630,761, 338 8 0 0 0 0 2 103 - SGN-E221932 359 13 359 C09SLe0066M20.1 108242 455 904 3 64,139,143, 0,64,203, 455,608,761, 40 0 0 0 0 0 3 21 - SGN-E225514 345 1 41 C09SLe0066M20.1 108242 67648 67709 4 6,19,6,9, 304,310,329,335, 67648,67658,67680,67700, 232 4 0 0 0 0 0 0 - SGN-E232485 253 17 253 C09SLe0066M20.1 108242 662 898 1 236, 0, 662, 217 2 0 0 0 0 1 226 + SGN-E236246 285 66 285 C09SLe0066M20.1 108242 0 445 2 131,88, 66,197, 0,357, 337 3 0 0 0 0 2 315 + SGN-E238557 410 70 410 C09SLe0066M20.1 108242 4 659 3 127,162,51, 70,197,359, 4,357,608, 397 5 0 0 1 7 3 109 - SGN-E239074 430 21 430 C09SLe0066M20.1 108242 376 887 4 143,139,19,101, 0,143,282,308, 376,608,761,786, 329 4 0 0 0 0 2 103 - SGN-E239282 351 18 351 C09SLe0066M20.1 108242 453 889 3 66,139,128, 0,66,205, 453,608,761, 96 2 0 0 0 0 0 0 + SGN-E240282 475 377 475 C09SLe0066M20.1 108242 0 98 1 98, 377, 0, 370 2 0 0 0 0 2 315 + SGN-E241848 438 66 438 C09SLe0066M20.1 108242 0 687 3 131,162,79, 66,197,359, 0,357,608, 365 5 0 1 0 0 2 315 + SGN-E242207 437 66 437 C09SLe0066M20.1 108242 0 686 3 131,162,78, 66,197,359, 0,357,608, 41 1 0 0 0 0 2 376 - SGN-E244201 561 265 307 C09SLe0066M20.1 108242 30974 31392 3 25,6,11, 254,279,285, 30974,31045,31381, 541 9 0 0 1 1 3 3320 - SGN-E247407 551 0 551 C09SLe0066M20.1 108242 5965 9835 5 22,192,213,117,6, 0,22,214,427,545, 5965,6065,6364,9712,9829, 45 0 0 0 0 0 4 31 - SGN-E249046 476 18 63 C09SLe0066M20.1 108242 67633 67709 5 8,15,6,7,9, 413,421,436,442,449, 67633,67658,67680,67691,67700, 31 1 0 0 0 0 0 0 - SGN-E254946 519 99 131 C09SLe0066M20.1 108242 45479 45511 1 32, 388, 45479, 83 2 0 0 1 1 0 0 + SGN-E261465 765 679 765 C09SLe0066M20.1 108242 0 85 2 54,31, 679,734, 0,54, 788 10 0 0 1 1 6 4993 - SGN-E261762 799 0 799 C09SLe0066M20.1 108242 3975 9766 8 54,3,77,178,27,192,213,54, 0,54,57,134,313,340,532,745, 3975,4032,5541,5782,5960,6065,6364,9712, 41 1 0 0 0 0 0 0 + SGN-E262212 753 711 753 C09SLe0066M20.1 108242 0 42 1 42, 711, 0, 452 8 0 0 0 0 2 185 - SGN-E275025 460 0 460 C09SLe0066M20.1 108242 5853 6498 3 134,192,134, 0,134,326, 5853,6065,6364, 362 4 0 0 2 11 6 1086 + SGN-E279085 384 7 384 C09SLe0066M20.1 108242 85165 86617 7 67,30,11,121,73,3,61, 7,81,115,126,247,320,323, 85165,85238,85274,85370,86231,86487,86556, 293 4 0 0 1 8 0 0 - SGN-E279240 502 7 312 C09SLe0066M20.1 108242 62671 62968 2 276,21, 190,474, 62671,62947, 373 0 0 0 0 0 2 315 + SGN-E296029 427 54 427 C09SLe0066M20.1 108242 0 688 3 131,162,80, 54,185,347, 0,357,608, 588 9 0 0 1 1 2 775 + SGN-E303433 609 11 609 C09SLe0066M20.1 108242 2590 3962 3 440,89,68, 11,451,541, 2590,3128,3894, 508 8 0 0 1 2 3 3243 - SGN-E309514 520 2 520 C09SLe0066M20.1 108242 6070 9829 4 187,213,79,37, 0,187,400,481, 6070,6364,9712,9792, 524 9 0 0 1 1 2 3242 - SGN-E311979 534 0 534 C09SLe0066M20.1 108242 6067 9842 4 190,213,117,13, 0,190,403,521, 6067,6364,9712,9829, 614 12 0 0 3 13 6 1294 + SGN-E314498 639 0 639 C09SLe0066M20.1 108242 85173 87093 7 59,30,11,121,73,229,103, 0,66,100,111,232,307,536, 85173,85238,85274,85370,86231,86556,86990, 506 7 0 0 3 13 5 1089 + SGN-E315418 526 0 526 C09SLe0066M20.1 108242 85166 86768 6 66,30,11,121,73,212, 0,73,107,118,239,314, 85166,85238,85274,85370,86231,86556, 503 7 0 0 1 1 2 3242 - SGN-E323717 512 1 512 C09SLe0066M20.1 108242 6085 9837 4 172,213,117,8, 0,172,385,503, 6085,6364,9712,9829, 497 4 0 0 0 0 2 103 - SGN-E333615 501 0 501 C09SLe0066M20.1 108242 370 974 3 149,139,213, 0,149,288, 370,608,761, 326 13 0 0 2 14 2 28 - SGN-E333619 353 0 353 C09SLe0066M20.1 108242 607 974 4 143,76,7,113, 0,150,233,240, 607,771,847,861, 638 8 0 0 0 0 4 3321 - SGN-E334596 646 0 646 C09SLe0066M20.1 108242 5861 9828 5 47,78,192,213,116, 0,47,125,317,530, 5861,5909,6065,6364,9712, 34 1 0 0 0 0 0 0 + SGN-E340061 771 736 771 C09SLe0066M20.1 108242 0 35 1 35, 736, 0, 615 10 0 0 2 2 4 3321 - SGN-E342484 627 0 627 C09SLe0066M20.1 108242 5878 9824 7 12,63,33,46,146,213,112, 0,12,76,109,156,302,515, 5878,5891,5954,6065,6111,6364,9712, 56 1 0 0 1 36 3 130 + SGN-E349385 584 487 580 C09SLe0066M20.1 108242 67656 67843 4 16,12,14,15, 487,539,551,565, 67656,67763,67780,67828, 452 4 0 0 0 0 2 103 + SGN-E349512 456 0 456 C09SLe0066M20.1 108242 416 975 3 103,139,214, 0,103,242, 416,608,761, 32 0 0 0 0 0 0 0 - SGN-E350209 739 588 620 C09SLe0066M20.1 108242 37459 37491 1 32, 119, 37459, 367 4 0 0 0 0 2 103 + SGN-E350303 381 0 371 C09SLe0066M20.1 108242 430 904 3 89,139,143, 0,89,228, 430,608,761, 58 0 0 0 1 10 3 20 - SGN-E350652 433 350 418 C09SLe0066M20.1 108242 37426 37504 5 8,10,27,8,5, 15,33,43,70,78, 37426,37434,37460,37490,37499, 48 0 0 0 1 5 3 30 - SGN-E350816 417 358 411 C09SLe0066M20.1 108242 37426 37504 5 8,9,19,7,5, 6,19,28,47,54, 37426,37434,37467,37491,37499, 58 0 0 0 1 10 3 20 - SGN-E350891 422 348 416 C09SLe0066M20.1 108242 37426 37504 5 8,10,27,8,5, 6,24,34,61,69, 37426,37434,37460,37490,37499, 502 4 0 0 0 0 3 329 + SGN-E351096 516 0 506 C09SLe0066M20.1 108242 63 898 4 68,162,139,137, 0,68,230,369, 63,357,608,761, 502 4 0 0 0 0 3 329 + SGN-E352405 516 0 506 C09SLe0066M20.1 108242 63 898 4 68,162,139,137, 0,68,230,369, 63,357,608,761, 610 4 0 0 1 1 4 759 + SGN-E353254 615 0 615 C09SLe0066M20.1 108242 63 1436 6 68,162,139,231,9,5, 0,68,230,369,601,610, 63,357,608,761,992,1431, 48 0 0 0 1 5 3 30 - SGN-E353808 411 354 407 C09SLe0066M20.1 108242 37426 37504 5 8,9,19,7,5, 4,17,26,45,52, 37426,37434,37467,37491,37499, 502 4 0 0 0 0 3 329 + SGN-E355315 516 0 506 C09SLe0066M20.1 108242 63 898 4 68,162,139,137, 0,68,230,369, 63,357,608,761, 502 4 0 0 0 0 3 329 + SGN-E356224 516 0 506 C09SLe0066M20.1 108242 63 898 4 68,162,139,137, 0,68,230,369, 63,357,608,761, 48 0 0 0 1 5 3 30 - SGN-E356798 412 355 408 C09SLe0066M20.1 108242 37426 37504 5 8,9,19,7,5, 4,17,26,45,52, 37426,37434,37467,37491,37499, 224 3 0 0 0 0 1 210 + SGN-E365418 562 0 227 C09SLe0066M20.1 108242 87249 87686 2 86,141, 0,86, 87249,87545, 286 3 0 0 0 0 1 210 + SGN-E368222 568 4 293 C09SLe0066M20.1 108242 87187 87686 2 148,141, 4,152, 87187,87545, 49 0 0 0 1 1 1 33173 - SGN-E369090 663 374 424 C09SLe0066M20.1 108242 37457 70679 2 27,22, 239,267, 37457,70657, 667 10 0 0 1 1 2 775 + SGN-E369319 695 8 686 C09SLe0066M20.1 108242 2580 4032 3 450,89,138, 8,458,548, 2580,3128,3894, 607 8 0 0 1 1 3 3320 - SGN-E369320 616 0 616 C09SLe0066M20.1 108242 5900 9835 5 87,192,213,117,6, 0,87,279,492,610, 5900,6065,6364,9712,9829, 54 0 0 0 2 36 2 216 + SGN-E369394 580 47 137 C09SLe0066M20.1 108242 67524 67794 3 19,18,17, 47,74,120, 67524,67654,67777, 30 0 0 0 0 0 0 0 - SGN-E369429 673 24 54 C09SLe0066M20.1 108242 37458 37488 1 30, 619, 37458, 38 0 0 0 0 0 2 37 - SGN-E369640 604 5 43 C09SLe0066M20.1 108242 67597 67672 3 16,8,14, 561,577,585, 67597,67633,67658, 39 0 0 0 0 0 2 17 + SGN-E374022 731 683 722 C09SLe0066M20.1 108242 67521 67577 3 22,5,12, 683,705,710, 67521,67546,67565, 56 0 0 0 2 7 2 25173 - SGN-E378372 703 374 437 C09SLe0066M20.1 108242 45450 70679 3 8,26,22, 266,279,307, 45450,45476,70657, 56 0 0 0 2 7 2 25173 - SGN-E378756 718 374 437 C09SLe0066M20.1 108242 45450 70679 3 8,26,22, 281,294,322, 45450,45476,70657, 38 0 0 0 1 17 0 0 - SGN-E395393 730 170 225 C09SLe0066M20.1 108242 45477 45515 2 22,16, 505,544, 45477,45499, 38 0 0 0 1 17 0 0 + SGN-E395394 662 521 576 C09SLe0066M20.1 108242 45477 45515 2 22,16, 521,560, 45477,45499, 84 2 0 0 2 48 5 180 + SGN-E396986 505 362 496 C09SLe0066M20.1 108242 67524 67790 6 17,10,15,8,20,16, 362,379,389,447,455,480, 67524,67546,67586,67633,67656,67774, 63 0 0 0 0 0 5 86 - SGN-E396986 505 319 382 C09SLe0066M20.1 108242 67524 67673 6 19,5,12,4,8,15, 123,142,147,159,163,171, 67524,67546,67565,67593,67633,67658, 37 0 0 0 0 0 2 17 - SGN-E540772 693 23 60 C09SLe0066M20.1 108242 67523 67577 3 20,5,12, 633,653,658, 67523,67546,67565, 63 0 0 0 2 89 4 249 + SGN-E551774 648 290 442 C09SLe0066M20.1 108242 67565 67877 5 12,18,10,10,13, 290,302,332,342,429, 67565,67658,67718,67783,67864, 39 0 0 0 0 0 2 315 - SGN-E552272 527 488 527 C09SLe0066M20.1 108242 67322 67676 3 9,14,16, 0,9,23, 67322,67636,67660, 57 0 0 0 2 37 4 85 + SGN-E553220 623 528 622 C09SLe0066M20.1 108242 67565 67707 5 14,15,12,9,7, 528,566,581,606,615, 67565,67641,67658,67677,67700, 98 1 0 0 0 0 0 0 + SGN-E555513 843 744 843 C09SLe0066M20.1 108242 0 99 1 99, 744, 0, 39 0 0 0 0 0 2 111 - SGN-E555627 418 379 418 C09SLe0066M20.1 108242 67526 67676 3 8,15,16, 0,8,23, 67526,67635,67660, 38 1 0 0 0 0 2 16 + SGN-E556125 783 373 412 C09SLe0066M20.1 108242 67522 67577 3 21,5,13, 373,394,399, 67522,67546,67564, 66 0 0 0 2 8 6 400 + SGN-E556315 599 504 578 C09SLe0066M20.1 108242 67633 68099 7 8,17,6,9,10,7,9, 504,512,529,535,544,556,569, 67633,67658,67680,67700,67833,67844,68090, 49 0 0 0 0 0 3 271 + SGN-E690175 276 208 257 C09SLe0066M20.1 108242 67524 67844 4 19,5,12,13, 208,227,232,244, 67524,67546,67565,67831, 192 4 0 0 0 0 1 226 + SGN-E697541 704 508 704 C09SLe0066M20.1 108242 0 422 2 131,65, 508,639, 0,357, 60 0 0 0 0 0 0 0 + SGN-E699993 798 738 798 C09SLe0066M20.1 108242 0 60 1 60, 738, 0, 100 0 0 0 0 0 0 0 + SGN-E700003 822 722 822 C09SLe0066M20.1 108242 0 100 1 100, 722, 0, 176 0 0 0 0 0 1 226 + SGN-E701361 904 728 904 C09SLe0066M20.1 108242 0 402 2 131,45, 728,859, 0,357, 382 1 0 0 1 1 3 315 + SGN-E701617 812 428 812 C09SLe0066M20.1 108242 0 698 5 131,161,3,84,4, 428,559,720,723,808, 0,357,606,610,694, 909 1 0 1 0 0 5 1614 + SGN-E702238 915 3 914 C09SLe0066M20.1 108242 85161 87686 6 124,121,73,288,164,141, 3,127,248,321,609,773, 85161,85370,86231,86497,87171,87545, 76 1 0 0 0 0 0 0 + SGN-E705718 816 736 813 C09SLe0066M20.1 108242 0 77 1 77, 736, 0, 308 0 0 0 0 0 2 315 + SGN-E706735 798 490 798 C09SLe0066M20.1 108242 0 623 3 131,162,15, 490,621,783, 0,357,608, 100 1 0 0 0 0 0 0 + SGN-E709330 847 746 847 C09SLe0066M20.1 108242 0 101 1 101, 746, 0, 74 2 0 0 1 28 5 231 + SGN-E712602 696 460 564 C09SLe0066M20.1 108242 67641 67948 6 13,24,11,9,6,13, 460,473,525,536,545,551, 67641,67662,67687,67700,67925,67935, 39 0 0 0 0 0 2 237 + SGN-E713130 668 567 606 C09SLe0066M20.1 108242 67518 67794 3 5,18,16, 567,572,590, 67518,67524,67778, 38 0 0 0 0 0 2 75 + SGN-E713833 625 551 589 C09SLe0066M20.1 108242 67563 67676 3 14,8,16, 551,565,573, 67563,67633,67660, 37 0 0 0 1 4 1 8 + SGN-E714885 472 326 367 C09SLe0066M20.1 108242 45489 45534 2 30,7, 326,360, 45489,45527, 42 0 0 0 1 5 2 85 + SGN-E715622 720 622 669 C09SLe0066M20.1 108242 67523 67650 3 12,13,17, 622,634,652, 67523,67564,67633, 52 0 0 0 2 76 3 201 + SGN-E716126 709 561 689 C09SLe0066M20.1 108242 67524 67777 4 19,15,13,5, 561,654,669,684, 67524,67639,67758,67772, 42 1 0 0 0 0 2 246 + SGN-E716610 524 444 487 C09SLe0066M20.1 108242 67563 67852 3 14,22,7, 444,458,480, 67563,67658,67845, 59 0 0 0 1 123 3 22314 + SGN-E716699 657 469 651 C09SLe0066M20.1 108242 45478 67851 4 26,8,18,7, 469,618,626,644, 45478,67633,67658,67844, 583 0 0 0 0 0 2 315 + SGN-E717313 708 115 698 C09SLe0066M20.1 108242 0 898 3 131,162,290, 115,246,408, 0,357,608, 48 0 0 0 1 41 3 73 + SGN-E718132 642 472 561 C09SLe0066M20.1 108242 67528 67649 4 15,5,12,16, 472,487,492,545, 67528,67546,67565,67633, 56 0 0 1 2 13 5 284 + SGN-E718437 768 667 737 C09SLe0066M20.1 108242 67534 67875 6 9,12,14,6,6,10, 667,676,688,702,709,727, 67534,67565,67583,67846,67854,67865, 42 0 0 0 0 0 3 34 + SGN-E718982 729 635 677 C09SLe0066M20.1 108242 67633 67709 4 8,19,6,9, 635,643,662,668, 67633,67658,67680,67700, 41 0 0 0 0 0 3 36 + SGN-E719100 579 517 558 C09SLe0066M20.1 108242 67632 67709 4 9,17,6,9, 517,526,543,549, 67632,67658,67680,67700, 43 0 0 0 0 0 3 36 + SGN-E719445 623 544 587 C09SLe0066M20.1 108242 67525 67604 4 18,5,12,8, 544,562,567,579, 67525,67546,67565,67596, 41 0 0 0 0 0 3 36 + SGN-E720428 671 598 639 C09SLe0066M20.1 108242 67632 67709 4 9,17,6,9, 598,607,624,630, 67632,67658,67680,67700, 34 0 0 1 0 0 1 80 + SGN-E723267 789 724 759 C09SLe0066M20.1 108242 67561 67676 2 17,18, 724,741, 67561,67658, 58 0 0 0 0 0 0 0 + SGN-E724602 833 775 833 C09SLe0066M20.1 108242 0 58 1 58, 775, 0, 60 0 0 0 2 33 4 208 + SGN-E724852 573 377 470 C09SLe0066M20.1 108242 67524 67792 5 16,15,6,9,14, 377,425,440,446,456, 67524,67658,67680,67700,67778, 31 1 0 0 0 0 0 0 + SGN-E725104 687 448 480 C09SLe0066M20.1 108242 45479 45511 1 32, 448, 45479, 55 1 0 0 0 0 0 0 + SGN-E727099 807 751 807 C09SLe0066M20.1 108242 0 56 1 56, 751, 0, 114 1 0 0 0 0 0 0 + SGN-E737039 843 728 843 C09SLe0066M20.1 108242 0 115 1 115, 728, 0, 47 1 0 0 0 0 2 105 + SGN-E738450 496 411 459 C09SLe0066M20.1 108242 67523 67676 3 20,12,16, 411,431,443, 67523,67565,67660, 61 0 0 0 2 159 3 185 + SGN-E740048 710 424 644 C09SLe0066M20.1 108242 67523 67769 4 20,18,13,10, 424,478,621,634, 67523,67636,67663,67759, 47 1 0 0 1 1 3 257 + SGN-E740486 500 434 483 C09SLe0066M20.1 108242 67547 67852 4 7,13,21,7, 434,442,455,476, 67547,67564,67659,67845, 43 1 0 0 0 0 3 19 + SGN-E744794 2043 1998 2042 C09SLe0066M20.1 108242 67514 67577 4 5,22,5,12, 1998,2003,2025,2030, 67514,67521,67546,67565, 1487 0 0 0 0 0 7 5769 - SGN-E745973 1505 1 1488 C09SLe0066M20.1 108242 2592 9848 8 438,87,139,79,203,192,213,136, 17,455,542,681,760,963,1155,1368, 2592,3128,3891,5540,5784,6065,6364,9712, 588 1 0 0 1 1 2 315 + SGN-E746080 1403 800 1390 C09SLe0066M20.1 108242 0 904 4 131,162,292,4, 800,931,1093,1386, 0,357,608,900,