GeneSeqer. Version of March 12, 2006. Date run: Tue Aug 29 00:40:29 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-yo0us/C09HBa0099P03/C09HBa0099P03.seq.screen ________________________________________________________________________________ Sequence 1: C09HBa0099P03.1-1, from 1 to 45342, both strands analyzed. ... started at: Tue Aug 29 01:07:45 2006 EST library file: /tmp/cxgn-bacpublish-resources-Lw6Hn9/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 15 EST library file: /tmp/cxgn-bacpublish-resources-Lw6Hn9/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 13 ******************************************************************************** EST sequence 17 +strand 542 n (File: SGN-E271714+) 1 CCCTCTTGAT AGCTCAAGTA ATGATGAAAT TGATAAACTT GCTATTAATG AACTCTTTGA 61 GGTTGCTTTA AAAGAAAGTA AAAGTGGCCC TCTTGTTTTG TTCATCAAAG ACATTGAGAA 121 GTCTATGGTG GGTAATCCTG AGGCCTATGC TGCTTTCAAG ATTAAGCTCG AGCATTTGCC 181 AGAGAATGTT GTTGCCATAG CTTCCCATGC CCAGTCGGAC AGCCGAAAGG AGAAATCGCA 241 TCCTGGTGGC TTGCTATTTA CAAAATTTGG AAGTAACCAA ACAGCATTGC TTGACCTTGC 301 CTTCCCAGAT AATTTTGGTA GGTTGCATGA TAGAAGCAAA GAAACCCCCA AGACGATGAA 361 GCAGCTCACA CGACTGTTTC CCAACAAAGT TACCATACAG ATCCCTCAGG ACGAAACCTT 421 ATTATCCGAC TGGAAGCAAA AGTTAGATCG GGATATGGAA ACTATGAAAT CTCAGTCAAA 481 CATTGCAAGC ATTCGCAATG TTTTGAATCG ATTCAAAATT AATTGCGATG ACCTTGAAAT 541 TC Predicted gene structure (within gDNA segment 2316 to 1): Exon 1 1689 1629 ( 61 n); cDNA 1 61 ( 61 n); score: 0.984 Intron 1 1628 1546 ( 83 n); Pd: 0.997 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 2 1545 1372 ( 174 n); cDNA 62 235 ( 174 n); score: 1.000 Intron 2 1371 1287 ( 85 n); Pd: 0.877 (s: 1.00), Pa: 0.929 (s: 1.00) Exon 3 1286 1215 ( 72 n); cDNA 236 307 ( 72 n); score: 1.000 MATCH C09HBa0099P03.1-1- SGN-E271714+ 0.997 307 0.566 C PGS_C09HBa0099P03.1-1-_SGN-E271714+ (1689 1629,1545 1372,1286 1215) Alignment (genomic DNA sequence = upper lines): CCGTCTTGAT AGCTCAAGTA ATGATGAAAT TGATAAACTT GCTATTAATG AACTCTTTGA 1630 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTCTTGAT AGCTCAAGTA ATGATGAAAT TGATAAACTT GCTATTAATG AACTCTTTGA 60 GGTATTTTCT AATATTCCTT TCCATGATAC TATTCCACTT CTTAACCGAG TGTGATAGCT 1570 | G......... .......... .......... .......... .......... .......... 61 TATTTATATG TTTTATCTGT ATAGGTTGCT TTAAAAGAAA GTAAAAGTGG CCCTCTTGTT 1510 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGCT TTAAAAGAAA GTAAAAGTGG CCCTCTTGTT 97 TTGTTCATCA AAGACATTGA GAAGTCTATG GTGGGTAATC CTGAGGCCTA TGCTGCTTTC 1450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCATCA AAGACATTGA GAAGTCTATG GTGGGTAATC CTGAGGCCTA TGCTGCTTTC 157 AAGATTAAGC TCGAGCATTT GCCAGAGAAT GTTGTTGCCA TAGCTTCCCA TGCCCAGTCG 1390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTAAGC TCGAGCATTT GCCAGAGAAT GTTGTTGCCA TAGCTTCCCA TGCCCAGTCG 217 GACAGCCGAA AGGAGAAAGT ATGCAAGGCA TAGTTATTCT GCATTTCTTT CTGATAAAAA 1330 |||||||||| |||||||| GACAGCCGAA AGGAGAAA.. .......... .......... .......... .......... 235 ATTGCCTTGC GATGCTGATA GCCTTACTTT TTATCTGTTA CAGTCGCATC CTGGTGGCTT 1270 ||||||| |||||||||| .......... .......... .......... .......... ...TCGCATC CTGGTGGCTT 252 GCTATTTACA AAATTTGGAA GTAACCAAAC AGCATTGCTT GACCTTGCCT TCCCA 1215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCTATTTACA AAATTTGGAA GTAACCAAAC AGCATTGCTT GACCTTGCCT TCCCA 307 hqPGS_C09HBa0099P03.1-1-_SGN-E271714+ (1689 1629,1545 1372,1286 1215) ******************************************************************************** EST sequence 18 +strand 491 n (File: SGN-E273058+) 1 CCGTCTTGAT AGCTCAAGTA ATGATGAAAT TGATAAACTT GCTATTAATG AACTCTTTGA 61 GGTTGCTTTA AAAGAAAGTA AAAGTGGCCC TCTTGTTTTG TTCATCAAAG ACATTGAGAA 121 GTCTATGGTG GGTAATCCTG AGGCCTATGC TGCTTTCAAG ATTAAGCTCG AGCATTTGCC 181 AGAGAATGTT GTTGCCATAG CTTCCCATGC CCAGTCGGAC AGCCGAAAGG AGAAATCGCA 241 TCCTGGTGGC TTGCTATTTA CAAAATTTGG AAGTAACCAA ACAGCATTGC TTGACCTTGC 301 CTTCCCAGAT AATTTTGGTA GGTTGCATGA TAGAAGCAAA GAAACCCCCA AGACGATGAA 361 GCAGCTCACA CGACTGTTTC CCAACAAAGT TACCATACAG ATCCCTCAGG ACGAAACCTT 421 ATTATCCGAC TGGAAGCAAA AGTTAGATCG GGATATGGAA ACTATGAAAT CTCAGTCAAA 481 CATTGCAAGC A Predicted gene structure (within gDNA segment 2289 to 1): Exon 1 1689 1629 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 1628 1546 ( 83 n); Pd: 0.997 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 2 1545 1372 ( 174 n); cDNA 62 235 ( 174 n); score: 1.000 Intron 2 1371 1287 ( 85 n); Pd: 0.877 (s: 1.00), Pa: 0.929 (s: 1.00) Exon 3 1286 1215 ( 72 n); cDNA 236 307 ( 72 n); score: 1.000 MATCH C09HBa0099P03.1-1- SGN-E273058+ 1.000 307 0.625 C PGS_C09HBa0099P03.1-1-_SGN-E273058+ (1689 1629,1545 1372,1286 1215) Alignment (genomic DNA sequence = upper lines): CCGTCTTGAT AGCTCAAGTA ATGATGAAAT TGATAAACTT GCTATTAATG AACTCTTTGA 1630 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTCTTGAT AGCTCAAGTA ATGATGAAAT TGATAAACTT GCTATTAATG AACTCTTTGA 60 GGTATTTTCT AATATTCCTT TCCATGATAC TATTCCACTT CTTAACCGAG TGTGATAGCT 1570 | G......... .......... .......... .......... .......... .......... 61 TATTTATATG TTTTATCTGT ATAGGTTGCT TTAAAAGAAA GTAAAAGTGG CCCTCTTGTT 1510 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGCT TTAAAAGAAA GTAAAAGTGG CCCTCTTGTT 97 TTGTTCATCA AAGACATTGA GAAGTCTATG GTGGGTAATC CTGAGGCCTA TGCTGCTTTC 1450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTCATCA AAGACATTGA GAAGTCTATG GTGGGTAATC CTGAGGCCTA TGCTGCTTTC 157 AAGATTAAGC TCGAGCATTT GCCAGAGAAT GTTGTTGCCA TAGCTTCCCA TGCCCAGTCG 1390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTAAGC TCGAGCATTT GCCAGAGAAT GTTGTTGCCA TAGCTTCCCA TGCCCAGTCG 217 GACAGCCGAA AGGAGAAAGT ATGCAAGGCA TAGTTATTCT GCATTTCTTT CTGATAAAAA 1330 |||||||||| |||||||| GACAGCCGAA AGGAGAAA.. .......... .......... .......... .......... 235 ATTGCCTTGC GATGCTGATA GCCTTACTTT TTATCTGTTA CAGTCGCATC CTGGTGGCTT 1270 ||||||| |||||||||| .......... .......... .......... .......... ...TCGCATC CTGGTGGCTT 252 GCTATTTACA AAATTTGGAA GTAACCAAAC AGCATTGCTT GACCTTGCCT TCCCA 1215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GCTATTTACA AAATTTGGAA GTAACCAAAC AGCATTGCTT GACCTTGCCT TCCCA 307 hqPGS_C09HBa0099P03.1-1-_SGN-E273058+ (1689 1629,1545 1372,1286 1215) ******************************************************************************** EST sequence 26 +strand 604 n (File: SGN-E330094+) 1 TCTTGTTTTG TTCATCAAAG ACATTGAGAA GTCTATGGTG GGTAATCCTG AGGCCTATGC 61 TGCTTTCAAG ATTAAGCTCG AGCATTTGCC AGAGAATGTT GTTGCCATAG CTTCCCATGC 121 CCAGTCGGAC AGCCGAAAGG AGAAATCGCA TCCTGGTGGC TTGCTATTTA CAAAATTTGG 181 AAGTAACCAA ACAGCATTGC TTGACCTTGC CTTCCCAGAT AATTTTGGTA GGTTGCATGA 241 TAGAAGCAAA GAAACCCCCA AGACGATGAA GCAGCTCACA CGACTGTTTC CCAACAAAGT 301 TACCATACAG ATCCCTCAGG ACGAAACCTT ATTATCCGAC TGGAAGCAAA AGTTAGATCG 361 GGATATGGAA ACTATGAAAT CTCAGTCAAA CATTGCAAGC ATTCGCAATG TTTTGAATCG 421 ATTCAAAATT AATTGCGATG ACCTTGAAAT TCTATGCATA AAGGATCAAG CACTGACAAA 481 TGAAAGTGTT GAAAAGATAA TCGGCTGGGC TTTGAGTCAT CACCTTATGC ATAAATCTGA 541 GTCTGCTATG AAAGAGACGA AGCTAGCTAT CTCCAGTGAA AGCATTGCTT ATGGGCTCAG 601 TATG Predicted gene structure (within gDNA segment 2116 to 1): Exon 1 1516 1372 ( 145 n); cDNA 1 145 ( 145 n); score: 1.000 Intron 1 1371 1287 ( 85 n); Pd: 0.877 (s: 1.00), Pa: 0.929 (s: 1.00) Exon 2 1286 1215 ( 72 n); cDNA 146 217 ( 72 n); score: 1.000 MATCH C09HBa0099P03.1-1- SGN-E330094+ 1.000 217 0.359 C PGS_C09HBa0099P03.1-1-_SGN-E330094+ (1516 1372,1286 1215) Alignment (genomic DNA sequence = upper lines): TCTTGTTTTG TTCATCAAAG ACATTGAGAA GTCTATGGTG GGTAATCCTG AGGCCTATGC 1457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTTTTG TTCATCAAAG ACATTGAGAA GTCTATGGTG GGTAATCCTG AGGCCTATGC 60 TGCTTTCAAG ATTAAGCTCG AGCATTTGCC AGAGAATGTT GTTGCCATAG CTTCCCATGC 1397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTTCAAG ATTAAGCTCG AGCATTTGCC AGAGAATGTT GTTGCCATAG CTTCCCATGC 120 CCAGTCGGAC AGCCGAAAGG AGAAAGTATG CAAGGCATAG TTATTCTGCA TTTCTTTCTG 1337 |||||||||| |||||||||| ||||| CCAGTCGGAC AGCCGAAAGG AGAAA..... .......... .......... .......... 145 ATAAAAAATT GCCTTGCGAT GCTGATAGCC TTACTTTTTA TCTGTTACAG TCGCATCCTG 1277 |||||||||| .......... .......... .......... .......... .......... TCGCATCCTG 155 GTGGCTTGCT ATTTACAAAA TTTGGAAGTA ACCAAACAGC ATTGCTTGAC CTTGCCTTCC 1217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCTTGCT ATTTACAAAA TTTGGAAGTA ACCAAACAGC ATTGCTTGAC CTTGCCTTCC 215 CA 1215 || CA 217 hqPGS_C09HBa0099P03.1-1-_SGN-E330094+ (1516 1372,1286 1215) ******************************************************************************** EST sequence 16 +strand 557 n (File: SGN-E314709+) 1 AATTACTCAG AGATCTTGAC CCGCCAATTT TGACATCAAC CAGGCGCCAA GCTTTTAAAG 61 ATGCATTACA ACAAGGAATA CTTGATTCAA AAAGTATTGA GGTCTCGTTT GAAAATTTTC 121 CGTACTATTT GAGTGAAACC ACGAAGAATG TTCTGATTTC TTCCACTTAC GTTCATTTGA 181 AGTGTCACAA ATTCATAAAA TATGCACCTG ATCTCCCCAC GTTGTGCCCT AGGATTTTGT 241 TATCAGGTCC AGCAGGTTCA GAAATCTATC AGGAGACATT GGCCAAGGCT CTTGCAAAAT 301 ACTTTGGTGT CAGGCTACTG ATAGTTGATT CTCTTTTACT GCCTGGTGGG TCAATTGCCA 361 AAGACATTGA CTCTGTGAAG GAAAGTTCAA AGCCTGAGAG AGCAAGTGTC TTTGCTAAAC 421 GTGCTGCCCA GGTGGCTGCA CTACACCTTA ATAAGAAGCC AGCTTCAAGT GTTGAGGCTG 481 ATATAACTGG GGGTTCTACA GTAAGTTCTC ATGCTCAGCC TAAGCAGGAG GCATCTACTG 541 CATCATCCAA AAACTAC Predicted gene structure (within gDNA segment 6672 to 1557): Exon 1 4246 4114 ( 133 n); cDNA 1 133 ( 133 n); score: 0.752 Intron 1 4113 3942 ( 172 n); Pd: 0.958 (s: 0.76), Pa: 0.859 (s: 0.84) Exon 2 3941 3820 ( 122 n); cDNA 134 255 ( 122 n); score: 0.820 Intron 2 3819 3735 ( 85 n); Pd: 0.956 (s: 0.88), Pa: 0.729 (s: 0.88) Exon 3 3734 3643 ( 92 n); cDNA 256 347 ( 92 n); score: 0.859 Intron 3 3642 2710 ( 933 n); Pd: 0.206 (s: 0.84), Pa: 0.997 (s: 0.70) Exon 4 2709 2501 ( 209 n); cDNA 348 556 ( 209 n); score: 0.823 MATCH C09HBa0099P03.1-1- SGN-E314709+ 0.811 556 0.998 C PGS_C09HBa0099P03.1-1-_SGN-E314709+ (4246 4114,3941 3820,3734 3643,2709 2501) Alignment (genomic DNA sequence = upper lines): AACTACTCAA GGATTTTGAT CGTCCAGTTT CTGCTTTAAC TAGGCGCCAA ACATTTAAAA 4187 || |||||| ||| |||| | ||| ||| | | ||| ||||||||| | |||||| AATTACTCAG AGATCTTGAC CCGCCAATTT TGACATCAAC CAGGCGCCAA GCTTTTAAAG 60 ATGCCTTACA GCAAGGAGTA GTTGATTTCA ACACTATTGA TGTCACATTT GAAAATTTTC 4127 |||| ||||| |||||| || |||||| | | | |||||| ||| | ||| |||||||||| ATGCATTACA ACAAGGAATA CTTGATTCAA AAAGTATTGA GGTCTCGTTT GAAAATTTTC 120 CATATTACTT ATGGTAAAAA TTTGATCTTA CCCCCCTTCC CCCCCTCTTT CCAGTTTTCT 4067 | || || || | CGTACTATTT GAG....... .......... .......... .......... .......... 133 GGTTGGTATT GCTTTCTTTT CTGTCTTCTC TCGCACCAAA ATTATGTTTG TTCAAGTTGA 4007 .......... .......... .......... .......... .......... .......... 133 AATTGGCACT TGTGTATTTC TGGAATGTGT TCCATTGATT TCTATACTAC ATTTTTGTCT 3947 .......... .......... .......... .......... .......... .......... 133 GACAGTGAAA ATACAAAGAA TGTTCTGATT GCTTCCACTT ATATACACTT GAAGTGTAAC 3887 ||||| || ||||| |||||||||| ||||||||| | | || || ||||||| || .....TGAAA CCACGAAGAA TGTTCTGATT TCTTCCACTT ACGTTCATTT GAAGTGTCAC 188 GGGTTTGCAA AATTTGCATC AGATCTTCCC ACAGTGTGCC CTAGGATTTT GCTATCAGGT 3827 || || ||| |||| | ||||| ||| || |||||| |||||||||| | |||||||| AAATTCATAA AATATGCACC TGATCTCCCC ACGTTGTGCC CTAGGATTTT GTTATCAGGT 248 CCAGCAGGTA ACTACTGCTC CATAGAAATC ACTTATCTGG CTTTGTTCAG TTCTCCTGCC 3767 ||||||| CCAGCAG... .......... .......... .......... .......... .......... 255 CTCGAAATCA CATTTTGACT TGCTGCTCAC AGGTTCAGAG ATTTATCAGG AGACATTGGC 3707 ||||||| || ||||||| |||||||||| .......... .......... .......... ..GTTCAGAA ATCTATCAGG AGACATTGGC 283 CAAAGCACTT GCTAAGTACT TTTGTGCTAA GCTAATGATA GTTGATTCTC TCTTGCTGCC 3647 ||| || ||| || || |||| || ||| | |||| ||||| |||||||||| | || ||||| CAAGGCTCTT GCAAAATACT TTGGTGTCAG GCTACTGATA GTTGATTCTC TTTTACTGCC 343 TGGTGTAAGT GTCTTCTATT ACTTGGCTCA TGTGTCCTCA TTTGAGGGGC TCATACTTTT 3587 |||| TGGT...... .......... .......... .......... .......... .......... 347 TTACCACTGG TTACACCCAA TATGCCTCTT TATATTAGTT ATCTTGCTTC CTATCGCCTC 3527 .......... .......... .......... .......... .......... .......... 347 ATTTCATGGG AAGTTAGAAA TGTAGTTGAA AGTTTTGAAA GTTATACGAG AAATACGCGA 3467 .......... .......... .......... .......... .......... .......... 347 CAAGCTAAGA CTGTTCGGAT TACAGGCCAT TTCTGGTTTT CCAATTCCTT TTTTAGTAAT 3407 .......... .......... .......... .......... .......... .......... 347 AAATTGAATA GGAAAGTCTG TTTATTGGGG TTGAAAAAAG GAAACTTTGT ATCTAAAATT 3347 .......... .......... .......... .......... .......... .......... 347 GTGAGACCAA TAGCTCCTTT GCATAATAGC CAAATTTTTC TTTTTTCTAG TGTAACCATC 3287 .......... .......... .......... .......... .......... .......... 347 AAAAGATAAA CTATTACATA TATTAATGTT CATTTCATCT AACATTTACT GACAAAATAT 3227 .......... .......... .......... .......... .......... .......... 347 ATGCAAAATG GCTTGAAAAT AAGGAAAAAA CAGCTTTGAG TAAGGGGGGA AAGAAAGGAA 3167 .......... .......... .......... .......... .......... .......... 347 AACATTTTGG TTTGAGCCTT GGCCTCGAGA ACAATAGGTA TATTACTTCA ATGGGGTATT 3107 .......... .......... .......... .......... .......... .......... 347 ACAGAATGGG ACAGAAACTT TGGCTGCAAA TTTGTTAGTT TGCTTGTGTG AATCAACAAT 3047 .......... .......... .......... .......... .......... .......... 347 TTTCCTTGTT TCATTTGGGA TTTTGTCAGT ATGCTCATAT AAATCAACAC TGATCATCCA 2987 .......... .......... .......... .......... .......... .......... 347 CACTGCCCAC TGCAAGCCAG ATTAGAAGTA AATAGGGAAG TGCTTGACGG CTGGCTCAGG 2927 .......... .......... .......... .......... .......... .......... 347 GCAATGCAAT CTAAAGTTTT GCAAAATTTC TAATAATCAT ATGGATGGTG GTCAGACTAT 2867 .......... .......... .......... .......... .......... .......... 347 TGAACAGCTG CCCACCTGAG AATTATTGGG CAGTGTTAAG TGAAATGGGA GTGATTGTAG 2807 .......... .......... .......... .......... .......... .......... 347 TTTGAACATT TCTGTTATTG TTGGTGTAAG AACAGGTTAA TATGATCGAA TTTTTATTAC 2747 .......... .......... .......... .......... .......... .......... 347 CCTCCAATTC ATTTCCTTTT TCTTTAATAT TATGTAGGTT TCAAGTTCCA AAGATGTCGA 2687 | |||| | ||| |||| | || .......... .......... .......... .......GGG TCAATTGCCA AAGACATTGA 370 GCCTGTTAAA GTAAGCTCAA AACCAGAGAG AGCTAGTGTA TTTGCTAAAC GTGCGGCGCA 2627 |||| || | ||| |||| | || ||||| ||| ||||| |||||||||| |||| || || CTCTGTGAAG GAAAGTTCAA AGCCTGAGAG AGCAAGTGTC TTTGCTAAAC GTGCTGCCCA 430 AGCGGCAGCA TTGCATCTGA ATAAAAAGCC GGCTTCAAGT GTTGAGGCTG ATATAACTGG 2567 | ||| ||| | || || | |||| ||||| ||||||||| |||||||||| |||||||||| GGTGGCTGCA CTACACCTTA ATAAGAAGCC AGCTTCAAGT GTTGAGGCTG ATATAACTGG 490 TGGTTCAATT TTAAGTTCTC ATGCTCAGCC CAAGCAGGAG GCATCGACTG CCTCATCAAA 2507 ||||| | ||||||||| |||||||||| ||||||||| ||||| |||| | ||||| || GGGTTCTACA GTAAGTTCTC ATGCTCAGCC TAAGCAGGAG GCATCTACTG CATCATCCAA 550 AAACTA 2501 |||||| AAACTA 556 hqPGS_C09HBa0099P03.1-1-_SGN-E314709+ (4246 4114,3941 3820,3734 3643,2709 2501) ******************************************************************************** EST sequence 27 +strand 481 n (File: SGN-E313355+) 1 GAAAAATTAG TCAAAAAGAG AGTTTTTATT AGTTGAAGGG AGGTGTTTTT TTATGGAGCT 61 TTGGACTCAA CCCTTTTGCG GAGTTGTTGA GTTATACTTT GTGAAGTTTG TTGAATCCTG 121 GATGGGAAAG TCAAAGAGAA CTATTGCTGG ACCGGTGAAA ACAGTTGTTC CACTAGGCTT 181 GAATCTCCTT ATAGAGAGCG AGATATTCAC GCCTCTGCCT GAACAGATTT TTTTTCTTCA 241 TTTCATTTTA AGATGGATTC TTGTAATTTT TTGTTATCTT ATAAGTTTTC ACTAAAAAAT 301 TCAAGGAGAT TCATTATAGG TACAATTGAA AAAATCACGG ATGTCTAGAT GTGAGACGTC 361 AACAAGCCAT TTTGGTTCAA TAGTAACAAT TTTAAGAGGT GAAAGAGTAA AGTACTTTTC 421 TACTTAAGTT TTCTCAATGT TTCTTATGTG TTAACTGAGA AGCCCAATAA TGAAGAAATC 481 A Predicted gene structure (within gDNA segment 18074 to 13545): Exon 1 17242 16950 ( 293 n); cDNA 7 295 ( 289 n); score: 0.819 Intron 1 16949 15584 (1366 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 2 15583 15550 ( 34 n); cDNA 296 328 ( 33 n); score: 0.676 MATCH C09HBa0099P03.1-1- SGN-E313355+ 0.819 327 0.680 C PGS_C09HBa0099P03.1-1-_SGN-E313355+ (17242 16950,15583 15550) Alignment (genomic DNA sequence = upper lines): TTAGTCTAA- AGAGAGTTCT TATTAGTTGA AGGGAGGTGT TCTTTTTTTG TGGAGCTTTG 17184 |||||| || |||||||| | |||||||||| ||||||||| ||||||| |||||||||| TTAGTCAAAA AGAGAGTTTT TATTAGTTGA AGGGAGGTG- --TTTTTTTA TGGAGCTTTG 63 GACTCAACTC CTGTCCAGAG TTGTTGAGTT ATACTTTGTA AAGGCTGTTG TATCCTGGAG 17124 |||||||| | | | | ||| |||||||||| ||||||||| ||| ||||| |||||||| GACTCAACCC TTTTGCGGAG TTGTTGAGTT ATACTTTGTG AAGTTTGTTG AATCCTGGAT 123 GGGACAAGTC AAAGAGGACT ACTGCTGGAC CGGTGAAAAC ATTTGCTGCA GTGGGCTTGA 17064 |||| ||||| |||||| ||| | |||||||| |||||||||| | ||| | || | ||||||| GGGA-AAGTC AAAGAGAACT ATTGCTGGAC CGGTGAAAAC AGTTGTTCCA CTAGGCTTGA 182 ATCTCCTTAA AGAGAGCGAG ATATCCGCGC CTCAGCCTGA AGAGA-TTAC TTTCTTCATT 17005 ||||||||| |||||||||| |||| | ||| ||| |||||| | ||| || |||||||||| ATCTCCTTAT AGAGAGCGAG ATATTCACGC CTCTGCCTGA ACAGATTTTT TTTCTTCATT 242 TTATTTTCAA TTGTAATCTT GCAATTTTAT TATCTTGTAA GTTTTTTTTC ACTAACACTT 16945 | ||||| | || | |||| | |||||| | | | | | | | ||||| ||||| TCATTTTAAG ATGGATTCTT GTAATTTT-T TGTTATCTTA -TAAGTTTTC ACTAA..... 295 AATTTATTAT TTTACACATA CTGAAGTTTT GGATTTAGTT TAAGCATAAA TTTTATTAGT 16885 .......... .......... .......... .......... .......... .......... 295 AACTATTTAG TCAATATTTA AAAAGTGCAT TTAGGAAAAA TATAGTATTA AAAAAAAACA 16825 .......... .......... .......... .......... .......... .......... 295 ATTTTGCATG CTAATTTATG AATCATTTTT TTTTCTTATT AAAAACATGT TCAACGTCTT 16765 .......... .......... .......... .......... .......... .......... 295 TAATTCTTTG AAATAAATAG TTTTTTTTTT ACTTTGAAAA TTTTGAAAAT CGAACAAAGT 16705 .......... .......... .......... .......... .......... .......... 295 ATAACAAGAT AGAGTGGTTG TGATGGATTT AGGATGGGGC GAGAGTATTC ACCTGAACCC 16645 .......... .......... .......... .......... .......... .......... 295 TTTTGATAAA AAATTAACTA TTTATATAAA GTATTTTTTT TTCAAAATTT TAGTGAATAT 16585 .......... .......... .......... .......... .......... .......... 295 ATAGGATTTA AATACCTAAG CATAAGACTG AAAGTTACCT TAGTAATTTA GGGACTTCAT 16525 .......... .......... .......... .......... .......... .......... 295 AATTCATTTT TAAATAGATA TATCATATTT ATTTTTCTAA CCTACTTAAT AAAAATTCTG 16465 .......... .......... .......... .......... .......... .......... 295 AATCAGTATT TAAAAATACA ATTTAATTTC ACAAACTTAC TGAATAATTT GAATTGCATA 16405 .......... .......... .......... .......... .......... .......... 295 TTTGTTTGGT TGTAACTGCA GGCTTTGGAT GGAATGATGA TAAATGATAA TATTTTTGGT 16345 .......... .......... .......... .......... .......... .......... 295 CTGACTAAGT TACTTTTTTT AAAAAAAAAT TTTTATAATA TCTTGAGGGA TTTTAATTCC 16285 .......... .......... .......... .......... .......... .......... 295 CCACAAAACC CTTTTTTTTT TTTTTTAGAG TATATTCCAT TTGCTTTTTA AAATTTTGTC 16225 .......... .......... .......... .......... .......... .......... 295 AAACATTGGG TTTTTACTGA TTTTATGTGG ACCTCAACTT CCTCATCTTT AATGTATGGC 16165 .......... .......... .......... .......... .......... .......... 295 CTTCTCTTTT TTTAGGCTTC CATGATATTC CAATTCCCTA AATTATCTAT AAAACTATAT 16105 .......... .......... .......... .......... .......... .......... 295 ATTATATATT TTAAATAATT TGATTTTAAA TTTTAAAAAA AGAATTTAGC AATTGATCTT 16045 .......... .......... .......... .......... .......... .......... 295 ATGTTTAGTG AACTCTATAA TTTTTGGATA TGATGATATG AATATGTACT TATGTCCTCC 15985 .......... .......... .......... .......... .......... .......... 295 TAAAAATTAT TTTATTTGTC TCAATTTGTA TGACATAATT AAATTTTTGA GAGTTGAATG 15925 .......... .......... .......... .......... .......... .......... 295 ATTTAGTTAT ATCTGTGAAA TTAGACATGT AATATGTAAA TTTATCAAAG TAAATTTTAC 15865 .......... .......... .......... .......... .......... .......... 295 ATATTTGAAA ACTACGTATA AATACTATAA GACATTATAA TTGATATTTG AAAGAGGGAA 15805 .......... .......... .......... .......... .......... .......... 295 AATGGTCGGA AAAATACTTC AACATTGGCC AAAATAGTTG TTTCGATATC AAATTTTATG 15745 .......... .......... .......... .......... .......... .......... 295 GAGAACCTTT TACCTCATGC ACTTTTTAAA AGTATATTTT AAAGATATAT ATGTGCCCAC 15685 .......... .......... .......... .......... .......... .......... 295 GTGGACACAT TACTTTTCAA AATGATGCAA TATTTATGAT GTTCACGTGG ACACATATAT 15625 .......... .......... .......... .......... .......... .......... 295 ATCTTTAAAA TACATTTATT AAATAGTGCA AGGGGTAAAA GATCATGCAT GAAGTTTGTA 15565 | || || | || || | .......... .......... .......... .......... .AAAATTCAA GGAGATT-CA 313 TTGTAGCAAC AATTG 15550 || ||| || ||||| TTATAGGTAC AATTG 328 hqPGS_C09HBa0099P03.1-1-_SGN-E313355+ (17242 16950) ******************************************************************************** EST sequence 28 +strand 507 n (File: SGN-E313356+) 1 GAAAAATTAG TCAAAAAGAG AGTTTTTATT AGTTGAAGGG AGGTGTTTTT TTATGGAGCT 61 TTGGACTCAA CCCTTTTGCG GAGTTGTTGA GTTATACTTT GTGAAGTTTG TTGAATCCTG 121 GATGGGAAAG TCAAAGAGAA CTATTGCTGG ACCGGTGAAA ACAGTTGTTC CACTAGGCTT 181 GAATCTCCTT ATAGAGAGCG AGATATTCAC GCCTCTGCCT GAACAGATTT TTTTTCTTCA 241 TTTCATTTTA AGATGGATTC TTGTAATTTT TTGTTATCTT ATAAGTTTTC ACTAAAAAAT 301 TCAAGGAGAT TCATTATAGG TACAATTGAA AAAATCACGG ATGTCTAGAT GTGAGACGTC 361 AACAAGCCAT TTTGGTTCAA TAGTAACAAT TTTAAGAGGT GAAAGAGTAA AGTACTTTTC 421 TACTTAAGTT TTCTCAATGT TTCTTATGTG TTAACTGAGA AGCCCAATAA TGAAGAAATC 481 ACCTCTATGA GTGATGGTGA AACTGTC Predicted gene structure (within gDNA segment 18074 to 13285): Exon 1 17242 16950 ( 293 n); cDNA 7 295 ( 289 n); score: 0.819 Intron 1 16949 15584 (1366 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 2 15583 15550 ( 34 n); cDNA 296 328 ( 33 n); score: 0.676 MATCH C09HBa0099P03.1-1- SGN-E313356+ 0.819 327 0.645 C PGS_C09HBa0099P03.1-1-_SGN-E313356+ (17242 16950,15583 15550) Alignment (genomic DNA sequence = upper lines): TTAGTCTAA- AGAGAGTTCT TATTAGTTGA AGGGAGGTGT TCTTTTTTTG TGGAGCTTTG 17184 |||||| || |||||||| | |||||||||| ||||||||| ||||||| |||||||||| TTAGTCAAAA AGAGAGTTTT TATTAGTTGA AGGGAGGTG- --TTTTTTTA TGGAGCTTTG 63 GACTCAACTC CTGTCCAGAG TTGTTGAGTT ATACTTTGTA AAGGCTGTTG TATCCTGGAG 17124 |||||||| | | | | ||| |||||||||| ||||||||| ||| ||||| |||||||| GACTCAACCC TTTTGCGGAG TTGTTGAGTT ATACTTTGTG AAGTTTGTTG AATCCTGGAT 123 GGGACAAGTC AAAGAGGACT ACTGCTGGAC CGGTGAAAAC ATTTGCTGCA GTGGGCTTGA 17064 |||| ||||| |||||| ||| | |||||||| |||||||||| | ||| | || | ||||||| GGGA-AAGTC AAAGAGAACT ATTGCTGGAC CGGTGAAAAC AGTTGTTCCA CTAGGCTTGA 182 ATCTCCTTAA AGAGAGCGAG ATATCCGCGC CTCAGCCTGA AGAGA-TTAC TTTCTTCATT 17005 ||||||||| |||||||||| |||| | ||| ||| |||||| | ||| || |||||||||| ATCTCCTTAT AGAGAGCGAG ATATTCACGC CTCTGCCTGA ACAGATTTTT TTTCTTCATT 242 TTATTTTCAA TTGTAATCTT GCAATTTTAT TATCTTGTAA GTTTTTTTTC ACTAACACTT 16945 | ||||| | || | |||| | |||||| | | | | | | | ||||| ||||| TCATTTTAAG ATGGATTCTT GTAATTTT-T TGTTATCTTA -TAAGTTTTC ACTAA..... 295 AATTTATTAT TTTACACATA CTGAAGTTTT GGATTTAGTT TAAGCATAAA TTTTATTAGT 16885 .......... .......... .......... .......... .......... .......... 295 AACTATTTAG TCAATATTTA AAAAGTGCAT TTAGGAAAAA TATAGTATTA AAAAAAAACA 16825 .......... .......... .......... .......... .......... .......... 295 ATTTTGCATG CTAATTTATG AATCATTTTT TTTTCTTATT AAAAACATGT TCAACGTCTT 16765 .......... .......... .......... .......... .......... .......... 295 TAATTCTTTG AAATAAATAG TTTTTTTTTT ACTTTGAAAA TTTTGAAAAT CGAACAAAGT 16705 .......... .......... .......... .......... .......... .......... 295 ATAACAAGAT AGAGTGGTTG TGATGGATTT AGGATGGGGC GAGAGTATTC ACCTGAACCC 16645 .......... .......... .......... .......... .......... .......... 295 TTTTGATAAA AAATTAACTA TTTATATAAA GTATTTTTTT TTCAAAATTT TAGTGAATAT 16585 .......... .......... .......... .......... .......... .......... 295 ATAGGATTTA AATACCTAAG CATAAGACTG AAAGTTACCT TAGTAATTTA GGGACTTCAT 16525 .......... .......... .......... .......... .......... .......... 295 AATTCATTTT TAAATAGATA TATCATATTT ATTTTTCTAA CCTACTTAAT AAAAATTCTG 16465 .......... .......... .......... .......... .......... .......... 295 AATCAGTATT TAAAAATACA ATTTAATTTC ACAAACTTAC TGAATAATTT GAATTGCATA 16405 .......... .......... .......... .......... .......... .......... 295 TTTGTTTGGT TGTAACTGCA GGCTTTGGAT GGAATGATGA TAAATGATAA TATTTTTGGT 16345 .......... .......... .......... .......... .......... .......... 295 CTGACTAAGT TACTTTTTTT AAAAAAAAAT TTTTATAATA TCTTGAGGGA TTTTAATTCC 16285 .......... .......... .......... .......... .......... .......... 295 CCACAAAACC CTTTTTTTTT TTTTTTAGAG TATATTCCAT TTGCTTTTTA AAATTTTGTC 16225 .......... .......... .......... .......... .......... .......... 295 AAACATTGGG TTTTTACTGA TTTTATGTGG ACCTCAACTT CCTCATCTTT AATGTATGGC 16165 .......... .......... .......... .......... .......... .......... 295 CTTCTCTTTT TTTAGGCTTC CATGATATTC CAATTCCCTA AATTATCTAT AAAACTATAT 16105 .......... .......... .......... .......... .......... .......... 295 ATTATATATT TTAAATAATT TGATTTTAAA TTTTAAAAAA AGAATTTAGC AATTGATCTT 16045 .......... .......... .......... .......... .......... .......... 295 ATGTTTAGTG AACTCTATAA TTTTTGGATA TGATGATATG AATATGTACT TATGTCCTCC 15985 .......... .......... .......... .......... .......... .......... 295 TAAAAATTAT TTTATTTGTC TCAATTTGTA TGACATAATT AAATTTTTGA GAGTTGAATG 15925 .......... .......... .......... .......... .......... .......... 295 ATTTAGTTAT ATCTGTGAAA TTAGACATGT AATATGTAAA TTTATCAAAG TAAATTTTAC 15865 .......... .......... .......... .......... .......... .......... 295 ATATTTGAAA ACTACGTATA AATACTATAA GACATTATAA TTGATATTTG AAAGAGGGAA 15805 .......... .......... .......... .......... .......... .......... 295 AATGGTCGGA AAAATACTTC AACATTGGCC AAAATAGTTG TTTCGATATC AAATTTTATG 15745 .......... .......... .......... .......... .......... .......... 295 GAGAACCTTT TACCTCATGC ACTTTTTAAA AGTATATTTT AAAGATATAT ATGTGCCCAC 15685 .......... .......... .......... .......... .......... .......... 295 GTGGACACAT TACTTTTCAA AATGATGCAA TATTTATGAT GTTCACGTGG ACACATATAT 15625 .......... .......... .......... .......... .......... .......... 295 ATCTTTAAAA TACATTTATT AAATAGTGCA AGGGGTAAAA GATCATGCAT GAAGTTTGTA 15565 | || || | || || | .......... .......... .......... .......... .AAAATTCAA GGAGATT-CA 313 TTGTAGCAAC AATTG 15550 || ||| || ||||| TTATAGGTAC AATTG 328 hqPGS_C09HBa0099P03.1-1-_SGN-E313356+ (17242 16950) ******************************************************************************** EST sequence 11 +strand 558 n (File: SGN-E318001+) 1 AGTCTGGACA CCAAGGATGT TGAAGTGGAA CCTGAGCAGG CAGTGTCTGG AACTATATAT 61 GCCAATGGTG ACCATTCCGG AGAAAGCGTC TAGCGAGATG TATTGGAAGT TGAAGTCTCT 121 GGCCAAACAT CTGCTATATC AAGGTCAATC ACTGGCTCAG AGCAAGAAGG AGAAGCTAAA 181 GATCATATAG ATGAAGAAGC TAACCTTGAA GGCTCAGTTT CTGATGGAGA GACAGATGGT 241 ATGATTTTTG GAAGCTCTGA AGCTGCCAAA CAGTTTATGG AGGAGCTGGA AAGGGAATCT 301 GGTGGTGGCT CCTATGCTGG TGCTGAAGTT TCTCAGGATA TTGATGGTCA GATTGTCACC 361 GACTCCGATG AAGAGGCTGA TACTGATGAA GAAGGAGATG TGAAGGAGTT GTTTGATTCG 421 ACTGCCTTAG CTGCTCTTTT AAAAACAGCA ACAGGTGGTG ATTCTGATGG TGGCAACATA 481 ACAGTCGCAT CTCAAGATGG ATCATGACTG TTCTCTGTTG CACGTGCTGC TGGTCTTGCG 541 TCATCACTCC GGTCACTG Predicted gene structure (within gDNA segment 20047 to 22462): Exon 1 20647 21204 ( 558 n); cDNA 1 558 ( 558 n); score: 0.971 MATCH C09HBa0099P03.1-1+ SGN-E318001+ 0.971 558 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E318001+ (20647 21204) Alignment (genomic DNA sequence = upper lines): AGTCTGGACA CCAAGGATGT TGAAGTGGAA CCTGAGCAGG CAGTGTCTGG AACTATATAT 20706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTGGACA CCAAGGATGT TGAAGTGGAA CCTGAGCAGG CAGTGTCTGG AACTATATAT 60 GCCAATGGTG ACCATTCCGG AGAAAGCGTC GAGCGAGATG TAGTGGAAGT TGAAGTCTCT 20766 |||||||||| |||||||||| |||||||||| ||||||||| || ||||||| |||||||||| GCCAATGGTG ACCATTCCGG AGAAAGCGTC TAGCGAGATG TATTGGAAGT TGAAGTCTCT 120 GGTCAAACAT CTGCTATATC AAGGTCAATC ACTGGCTCAG AGCAAGAAGG AGAAGCTAAA 20826 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCAAACAT CTGCTATATC AAGGTCAATC ACTGGCTCAG AGCAAGAAGG AGAAGCTAAA 180 GATCATATAG ATGAAGAAGC TAACCTTGAA GGCTCAGTTT CAGATGGAGA GACAGATGGT 20886 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GATCATATAG ATGAAGAAGC TAACCTTGAA GGCTCAGTTT CTGATGGAGA GACAGATGGT 240 ATGATTTTTG GAAGCTCTGA AGCTGCCAAA CAGTTTATGG AGGAGCTGGA AAGGGAATCT 20946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATTTTTG GAAGCTCTGA AGCTGCCAAA CAGTTTATGG AGGAGCTGGA AAGGGAATCT 300 GGTGGTGGCT CCTATGCTGG TGCTGAGGTT TCTCAGGATA TTGATGGTCA GATTGTCACC 21006 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GGTGGTGGCT CCTATGCTGG TGCTGAAGTT TCTCAGGATA TTGATGGTCA GATTGTCACC 360 GACTCAGATG AGGAGGCTGA TACTGATGAA GAAGGAGATG TGAAGGAGTT GTTTGATTCA 21066 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| ||||||||| GACTCCGATG AAGAGGCTGA TACTGATGAA GAAGGAGATG TGAAGGAGTT GTTTGATTCG 420 GCTGCCTTAG CTGCTCTTTT AAAAGCAGCA ACAGGTGGTG ATTCTGATGG TGGCAACATA 21126 ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ACTGCCTTAG CTGCTCTTTT AAAAACAGCA ACAGGTGGTG ATTCTGATGG TGGCAACATA 480 ACAGTCACGT CTCAAGATGG ATCAAGACTG TTCTCTGTTG AACGTCCTGC TGGTCTTGGG 21186 |||||| | | |||||||||| |||| ||||| |||||||||| |||| |||| |||||||| | ACAGTCGCAT CTCAAGATGG ATCATGACTG TTCTCTGTTG CACGTGCTGC TGGTCTTGCG 540 TCATCACTCC GGTCACTG 21204 |||||||||| |||||||| TCATCACTCC GGTCACTG 558 hqPGS_C09HBa0099P03.1-1+_SGN-E318001+ (20647 21204) ******************************************************************************** EST sequence 15 +strand 702 n (File: SGN-E333345+) 1 CAACAGGTGG TGATTCTGAT GGTGGCAACA TAACAGTCAC GTCTCAAGAT GGATCAAGAC 61 TGTTCTCTGT TGAACGTCCT GCTGGTCTTG GGTCATCACT CCGGTCACTG AGGCCAGCTC 121 CCCGACCAAG CCAACCCAAT CTTTTTACTC ATTCCAATCT CCAGAACAGT GGAGAATCTG 181 AGAACAACTT GAGTGAAGAA GAGAAGAAGA AACTGGACAC ACTACAGCAG ATCAGGGTCA 241 AGTTTTTGAG GCTTATTCAC AGGTTGGGTC TATCTTCTGA TGAGCCCATA GCTGCACAAG 301 TTTTGTACCG GATGACACTT ATTGCACGAA GGCAAAACAG TCCACTTTTT AGCGTTGAGG 361 CTGCCAAGAT GAAAGCTTTC CAGCTTGAAG CAGAGGGGAA AGATGATTTG GACTTCTCTG 421 TGAATATCCT GGTTATTGGC AAATCTGGGG TGGGTAAGAG CGCTACCATA AACTCTATCT 481 TTGGAGAGGA AAAAACATCA ATTGATGCCT TTGGACCTGC TACCACCAGT GTGAAAGAGA 541 TCAGTGGTGT TGTAGATGGT GTTAAGATTC GGGTGTTTGA TACACCTGGC CTCAAGTCCT 601 CTGCGATGGA ACANGGNTTT CATCGCAGTG TCTTGTCTTC AGTAAAGAAG TTGACTAAGA 661 AGAATCCCCC TGATATTTAC CTCTATGTCG ATCGGTTGGA TG Predicted gene structure (within gDNA segment 20495 to 22406): Exon 1 21095 21796 ( 702 n); cDNA 1 702 ( 702 n); score: 0.994 MATCH C09HBa0099P03.1-1+ SGN-E333345+ 0.994 702 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E333345+ (21095 21796) Alignment (genomic DNA sequence = upper lines): CAACAGGTGG TGATTCTGAT GGTGGCAACA TAACAGTCAC GTCTCAAGAT GGATCAAGAC 21154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAGGTGG TGATTCTGAT GGTGGCAACA TAACAGTCAC GTCTCAAGAT GGATCAAGAC 60 TGTTCTCTGT TGAACGTCCT GCTGGTCTTG GGTCATCACT CCGGTCACTG AGGCCAGCTC 21214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCTCTGT TGAACGTCCT GCTGGTCTTG GGTCATCACT CCGGTCACTG AGGCCAGCTC 120 CCCGACCAAG CCAACCCAAT CTTTTTACTC ATTCCAATCT CCAGAACAGT GGAGAATCTG 21274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGACCAAG CCAACCCAAT CTTTTTACTC ATTCCAATCT CCAGAACAGT GGAGAATCTG 180 AGAACAACTT GAGTGAAGAA GAGAAGAAGA AACTGGACAC ACTACAGCAG ATCAGGGTCA 21334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACAACTT GAGTGAAGAA GAGAAGAAGA AACTGGACAC ACTACAGCAG ATCAGGGTCA 240 AGTTTTTGAG GCTTATTCAC AGGTTGGGTC TATCTTCTGA TGAGCCCATA GCTGCACAAG 21394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTTTGAG GCTTATTCAC AGGTTGGGTC TATCTTCTGA TGAGCCCATA GCTGCACAAG 300 TTTTGTACCG GATGACACTT ATTGCACGAA GGCAAAACAG TCCACTTTTT AGCGTTGAGG 21454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTACCG GATGACACTT ATTGCACGAA GGCAAAACAG TCCACTTTTT AGCGTTGAGG 360 CTGCCAAGAT GAAAGCTTTC CAGCTTGAAG CAGAGGGGAA AGATGATTTG GACTTCTCTG 21514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCAAGAT GAAAGCTTTC CAGCTTGAAG CAGAGGGGAA AGATGATTTG GACTTCTCTG 420 TGAATATCCT GGTTATTGGC AAATCTGGGG TGGGTAAGAG CGCTACCATA AACTCTATCT 21574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATATCCT GGTTATTGGC AAATCTGGGG TGGGTAAGAG CGCTACCATA AACTCTATCT 480 TTGGAGAGGA AAAAACATCA ATTGATGCCT TTGGACCTGC TACCACCAGT GTGAAAGAGA 21634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAGAGGA AAAAACATCA ATTGATGCCT TTGGACCTGC TACCACCAGT GTGAAAGAGA 540 TCAGTGGTGT TGTAGATGGT GTTAAGATTC GGGTGTTTGA TACACCTGGC CTCAAGTCCT 21694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTGGTGT TGTAGATGGT GTTAAGATTC GGGTGTTTGA TACACCTGGC CTCAAGTCCT 600 CTGCGATGGA ACAGGGTTTC AATCGCAGTG TCTTGTCTTC AGTAAAGAAG TTGACTAAGA 21754 |||||||||| ||| || || ||||||||| |||||||||| |||||||||| |||||||||| CTGCGATGGA ACANGGNTTT CATCGCAGTG TCTTGTCTTC AGTAAAGAAG TTGACTAAGA 660 AGAATCCCCC TGATATTTAC CTCTATGTCG ATCGGTTGGA TG 21796 |||||||||| |||||||||| |||||||||| |||||||||| || AGAATCCCCC TGATATTTAC CTCTATGTCG ATCGGTTGGA TG 702 hqPGS_C09HBa0099P03.1-1+_SGN-E333345+ (21095 21796) ******************************************************************************** EST sequence 6 +strand 908 n (File: SGN-E553479+) 1 CAAGTGCACT TTCAAAGCCT GAAGATCCAT TTGATCACCG TAAGCTCTTT GGTTTCCGCA 61 CACGCTCACC ACCTCTTCCC TACATGCTTT CTTCAATGTT GCAGTCACGT GCGCATCCAA 121 AGCTTTCTGC TGAGCAGGGT GGTGACAACG GTGATTCAGA CATTGACTTA GATGATTTGT 181 CAGACTCTGA CCAAGAAGAA GAAGATGAGT ATGACCAGCT TCCTCCCTTC AAGCCTCTTC 241 GGAAGGCTCA GCTTGCTAAG CTCAGCAAAG AACAGAGGAA GGCGTACTTT GAGGAGTATG 301 ACTACAGGGT CAAGCTCCTT CAGAAGAAAC AGTTGAGAGA AGATTTAAAA AGAATGAAAG 361 AGATGAAAAG TAAGGGAAAA GAGGCTGCAA TTGACAATGG TTATGCAGAG GAAGAAGCTG 421 ATGCAGGTGC AGCAGCTCCC GTAGCAGTTC CCCTTCCTGA CATGGCCCTT CCACCTTCTT 481 TTGATAGTGA TAATCCCGCC TATAGGTACC GCTTCTTGGA GCCCACATCA CAGTTCCTTG 541 CAAGGCCTGT TCTGGACACG CATGGTTGGG ATCATGATTG TGGCTATGAT GGTGTTAACG 601 TGGAACAAAG TTTAGCCATT GCCAGTCGTT TCCCTGCTGC AGTTACTGTG CAAATCACCA 661 AAGATAAGAA GGATTTCAGT ATCAATTTGG ACTCTTCGAT TGCTGCTAAG CACGGAGAAA 721 ATGGATCAAC CATGGCTGGC TTTGATATTC AAAGCATAGG GAAGCAACTT GCCTATATTG 781 TCCGAGGAGA AACCAAATTC NAAAGCTTGA AAAAGAACAA GACTGCTTGC GGAATTTCTG 841 TTACATTTCT AGGTGAAAAT ATGGTCACTG GACTTAAAGT TGAAGATCAA ATCATCTTAA 901 GCAAGCAA Predicted gene structure (within gDNA segment 21566 to 23764): Exon 1 22166 23073 ( 908 n); cDNA 1 908 ( 908 n); score: 0.997 MATCH C09HBa0099P03.1-1+ SGN-E553479+ 0.997 908 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E553479+ (22166 23073) Alignment (genomic DNA sequence = upper lines): CAAGTGCACT TTCAAAGCCT GAAGATCCAT TTGATCACCG TAAGCTCTTT GGTTTCCGCA 22225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGCACT TTCAAAGCCT GAAGATCCAT TTGATCACCG TAAGCTCTTT GGTTTCCGCA 60 CACGCTCACC ACCTCTTCCC TACATGCTTT CTTCAATGTT GCAGTCACGT GCGCATCCAA 22285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGCTCACC ACCTCTTCCC TACATGCTTT CTTCAATGTT GCAGTCACGT GCGCATCCAA 120 AGCTTTCTGC TGAGCAGGGT GGTGACAACG GTGATTCAGA CATTGACTTA GATGATTTGT 22345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTCTGC TGAGCAGGGT GGTGACAACG GTGATTCAGA CATTGACTTA GATGATTTGT 180 CAGACTCTGA CCAAGAAGAA GAAGATGAGT ATGACCAGCT TCCTCCCTTC AAGCCTCTTC 22405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACTCTGA CCAAGAAGAA GAAGATGAGT ATGACCAGCT TCCTCCCTTC AAGCCTCTTC 240 GGAAGGCTCA GCTTGCTAAG CTCAGCAAAG AACAGAGGAA GGCGTACTTT GAGGAGTATG 22465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGGCTCA GCTTGCTAAG CTCAGCAAAG AACAGAGGAA GGCGTACTTT GAGGAGTATG 300 ACTACAGGGT CAAGCTCCTT CAGAAGAAAC AGTTGAGAGA AGATTTAAAA AGAATGAAAG 22525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACAGGGT CAAGCTCCTT CAGAAGAAAC AGTTGAGAGA AGATTTAAAA AGAATGAAAG 360 AGATGAAAAG TAAGGGAAAA GAGGCTGCAA TTGACAATGG TTATGCAGAG GAAGAAGCTG 22585 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGAAAAG TAAGGGAAAA GAGGCTGCAA TTGACAATGG TTATGCAGAG GAAGAAGCTG 420 ATGCAGGTGC AGCAGCTCCC GTAGCAGTTC CCCTTCCTGA CATGGCCCTT CCACCTTCTT 22645 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGGTGC AGCAGCTCCC GTAGCAGTTC CCCTTCCTGA CATGGCCCTT CCACCTTCTT 480 TTGATAGTGA TAATCCCGCC TATAGGTACC GCTTCTTGGA GCCCACATCA CAGTTCCTTG 22705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATAGTGA TAATCCCGCC TATAGGTACC GCTTCTTGGA GCCCACATCA CAGTTCCTTG 540 CAAGGCCTGT TCTGGACACG CATGGTTGGG ATCATGATTG TGGCTATGAT GGTGTTAACG 22765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGCCTGT TCTGGACACG CATGGTTGGG ATCATGATTG TGGCTATGAT GGTGTTAACG 600 TGGAACAAAG TTTAGCCATT GCCAGTCGTT TCCCTGCTGC AGTTACTGTG CAAATCACCA 22825 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAACAAAG TTTAGCCATT GCCAGTCGTT TCCCTGCTGC AGTTACTGTG CAAATCACCA 660 AAGATAAGAA GGATTTCAGT ATCAATTTGG ACTCTTCGAT TGCTGCTAAG CACGGAGAAA 22885 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATAAGAA GGATTTCAGT ATCAATTTGG ACTCTTCGAT TGCTGCTAAG CACGGAGAAA 720 ATGGATCAAC CATGGCTGGC TTTGATATTC AAAGCATAGG GAAGCAACTT GCCTATATTG 22945 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATCAAC CATGGCTGGC TTTGATATTC AAAGCATAGG GAAGCAACTT GCCTATATTG 780 TCCGAGGAGA AACCAAATTC AAAAGCTTGA AGAAGAACAA GACTGCTTGC GGAATTTCTG 23005 |||||||||| |||||||||| ||||||||| | |||||||| |||||||||| |||||||||| TCCGAGGAGA AACCAAATTC NAAAGCTTGA AAAAGAACAA GACTGCTTGC GGAATTTCTG 840 TTACATTTCT AGGTGAAAAT ATGGTCACTG GACTTAAAGT TGAAGATCAA ATCATCTTAG 23065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTACATTTCT AGGTGAAAAT ATGGTCACTG GACTTAAAGT TGAAGATCAA ATCATCTTAA 900 GCAAGCAA 23073 |||||||| GCAAGCAA 908 hqPGS_C09HBa0099P03.1-1+_SGN-E553479+ (22166 23073) ******************************************************************************** EST sequence 5 +strand 434 n (File: SGN-E555297+) 1 ACGTGCGCAT CCAAAGCTTT CTGCTGAGCA GGGTGGTGAC AACGGTGATT CAGACATTGA 61 CTTAGATGAT TTGTCAGACT CTGACCAAGA AGAAGAAGAT GAGTATGACC AGCTTCCTCC 121 CTTCAAGCCT CTTCGGAAGG CTCAGCTTGC TAAGCTCAGC AAAGAACAGA GGAAGGCGTA 181 CTTTGAGGAG TATGACTACA GGGTCAAGCT CCTTCAGAAG AAACAGTTGA GAGAAGATTT 241 AAAAAGAATG AAAGAGATGA AAAGTAAGGG AAAAGAGGCT GCAATTGACA ATGGTTATGC 301 AGAGGAAGAA GCTGATGCAG GTGCAGCAGC TCCCGTAGCA GTTCCCCTTC CTGACATGGC 361 CCTTCCACCT TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TTGGAGCCCC 421 CATCACAGTT CCTT Predicted gene structure (within gDNA segment 21672 to 23522): Exon 1 22272 22704 ( 433 n); cDNA 1 434 ( 434 n); score: 0.992 MATCH C09HBa0099P03.1-1+ SGN-E555297+ 0.992 433 0.998 C PGS_C09HBa0099P03.1-1+_SGN-E555297+ (22272 22704) Alignment (genomic DNA sequence = upper lines): ACGTGCGCAT CCAAAGCTTT CTGCTGAGCA GGGTGGTGAC AACGGTGATT CAGACATTGA 22331 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGCGCAT CCAAAGCTTT CTGCTGAGCA GGGTGGTGAC AACGGTGATT CAGACATTGA 60 CTTAGATGAT TTGTCAGACT CTGACCAAGA AGAAGAAGAT GAGTATGACC AGCTTCCTCC 22391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGATGAT TTGTCAGACT CTGACCAAGA AGAAGAAGAT GAGTATGACC AGCTTCCTCC 120 CTTCAAGCCT CTTCGGAAGG CTCAGCTTGC TAAGCTCAGC AAAGAACAGA GGAAGGCGTA 22451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAAGCCT CTTCGGAAGG CTCAGCTTGC TAAGCTCAGC AAAGAACAGA GGAAGGCGTA 180 CTTTGAGGAG TATGACTACA GGGTCAAGCT CCTTCAGAAG AAACAGTTGA GAGAAGATTT 22511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGAGGAG TATGACTACA GGGTCAAGCT CCTTCAGAAG AAACAGTTGA GAGAAGATTT 240 AAAAAGAATG AAAGAGATGA AAAGTAAGGG AAAAGAGGCT GCAATTGACA ATGGTTATGC 22571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGAATG AAAGAGATGA AAAGTAAGGG AAAAGAGGCT GCAATTGACA ATGGTTATGC 300 AGAGGAAGAA GCTGATGCAG GTGCAGCAGC TCCCGTAGCA GTTCCCCTTC CTGACATGGC 22631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAGAA GCTGATGCAG GTGCAGCAGC TCCCGTAGCA GTTCCCCTTC CTGACATGGC 360 CCTTCCACCT TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTC- TTGGAGCCCA 22690 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| CCTTCCACCT TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TTGGAGCCCC 420 CATCACAGTT CCTT 22704 |||||||||| |||| CATCACAGTT CCTT 434 hqPGS_C09HBa0099P03.1-1+_SGN-E555297+ (22272 22704) ******************************************************************************** EST sequence 3 +strand 216 n (File: SGN-E295259+) 1 GAAAAGAGGC TTTTTCGACA TTGGCTATGC AGAGGAAGAA GCTGATGCAG GTGCAGCAGT 61 TCCCGTAGCA AATCCACTTC CTGACATGGC CCTTCCACCT TCTTTTGATA GTGATAATCC 121 CGCCTATAGG TACCGGTTTT TGGAGCCCAC ATCACAGCTC CTTGCAAGGC CTGTTCTGGA 181 CACGCATGGT TGGGATCATG ATTGTGGCTA TGATGG Predicted gene structure (within gDNA segment 21717 to 23367): Exon 1 22541 22757 ( 217 n); cDNA 1 216 ( 216 n); score: 0.935 MATCH C09HBa0099P03.1-1+ SGN-E295259+ 0.935 217 1.005 C PGS_C09HBa0099P03.1-1+_SGN-E295259+ (22541 22757) Alignment (genomic DNA sequence = upper lines): GAAAAGAGGC TGCAATTGAC AATGGTTATG CAGAGGAAGA AGCTGATGCA GGTGCAGCAG 22600 |||||||||| | | ||| | ||| |||| |||||||||| |||||||||| |||||||||| GAAAAGAGGC T-TTTTCGAC ATTGGCTATG CAGAGGAAGA AGCTGATGCA GGTGCAGCAG 59 CTCCCGTAGC AGTTCCCCTT CCTGACATGG CCCTTCCACC TTCTTTTGAT AGTGATAATC 22660 ||||||||| | ||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCGTAGC AAATCCACTT CCTGACATGG CCCTTCCACC TTCTTTTGAT AGTGATAATC 119 CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT CCTTGCAAGG CCTGTTCTGG 22720 |||||||||| |||||| || |||||||||| |||||||| | |||||||||| |||||||||| CCGCCTATAG GTACCGGTTT TTGGAGCCCA CATCACAGCT CCTTGCAAGG CCTGTTCTGG 179 ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGG 22757 |||||||||| |||||||||| |||||||||| ||||||| ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGG 216 hqPGS_C09HBa0099P03.1-1+_SGN-E295259+ (22541 22757) ******************************************************************************** EST sequence 7 +strand 363 n (File: SGN-E213650+) 1 GCTGATGCAG GTGCAGCAGC TCCCGTAGCA GTTCCCCTTC CTGACATGGC CCTTCCACCT 61 TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TGGAGCCCAC ATCACAGTTC 121 CTTGCAAGGC CTGTTCTGGA CACGCATGGT TGGGATCATG ATTGTGGCTA TGATGGTGTT 181 AACGTGGAAC AAAGTTTAGC CATTGCCAGT CGTTTCCCTG CTGCAGTTAC TGTGCAAATC 241 ACCAAAGATA AGAAGGATTT CAGTATCAAT TTGGACTCTT CGATTGCTGC TAAGCACGGA 301 GAAAATGGAT CAACCATGGC TGGCTTTGAT ATTCAAAGCA TAGGGAAGCA ACTTGCCTAT 361 ATT Predicted gene structure (within gDNA segment 21982 to 23554): Exon 1 22582 22944 ( 363 n); cDNA 1 363 ( 363 n); score: 1.000 MATCH C09HBa0099P03.1-1+ SGN-E213650+ 1.000 363 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E213650+ (22582 22944) Alignment (genomic DNA sequence = upper lines): GCTGATGCAG GTGCAGCAGC TCCCGTAGCA GTTCCCCTTC CTGACATGGC CCTTCCACCT 22641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATGCAG GTGCAGCAGC TCCCGTAGCA GTTCCCCTTC CTGACATGGC CCTTCCACCT 60 TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TGGAGCCCAC ATCACAGTTC 22701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TGGAGCCCAC ATCACAGTTC 120 CTTGCAAGGC CTGTTCTGGA CACGCATGGT TGGGATCATG ATTGTGGCTA TGATGGTGTT 22761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCAAGGC CTGTTCTGGA CACGCATGGT TGGGATCATG ATTGTGGCTA TGATGGTGTT 180 AACGTGGAAC AAAGTTTAGC CATTGCCAGT CGTTTCCCTG CTGCAGTTAC TGTGCAAATC 22821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTGGAAC AAAGTTTAGC CATTGCCAGT CGTTTCCCTG CTGCAGTTAC TGTGCAAATC 240 ACCAAAGATA AGAAGGATTT CAGTATCAAT TTGGACTCTT CGATTGCTGC TAAGCACGGA 22881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAAGATA AGAAGGATTT CAGTATCAAT TTGGACTCTT CGATTGCTGC TAAGCACGGA 300 GAAAATGGAT CAACCATGGC TGGCTTTGAT ATTCAAAGCA TAGGGAAGCA ACTTGCCTAT 22941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAATGGAT CAACCATGGC TGGCTTTGAT ATTCAAAGCA TAGGGAAGCA ACTTGCCTAT 360 ATT 22944 ||| ATT 363 hqPGS_C09HBa0099P03.1-1+_SGN-E213650+ (22582 22944) ******************************************************************************** EST sequence 4 +strand 547 n (File: SGN-E253297+) 1 GATGCAGGTG CAGCAGCTCC CGTAGCAGTT CCCCTTCCTG ACATGGCCCT TCCACGCTTC 61 TTTTGATAGT GATAATCCCG CCTATAGGTA CCGCTTCTTG GAGCCCACAT CACAGTTCCT 121 TGCAAGGCCT GTTCTGGACA CGCATGGTTG GGATCATGAT TGTGGCTATG ATGGTGTTAA 181 CGTGGAACAA AGTTTAGCCA TTGCCAGTCG TTTCCCTGCT GCAGTTACTG TGCAAATCAC 241 CAAAGATAAG AAGGATTTCA GTATCAATTT GGACTCTTCG ATTGCTGCTA AGCACGGAGA 301 AAATGGATCA ACCATGGCTG GCTTTGATAT TCAAAGCATA GGGAAGCAAC TTGCCTATAT 361 TGTCCGAGGA GAAACCAAAT TCAAAAGCTT GAAGAAGAAC AAGACTGCTT GCGGAATTTC 421 TGTTACATTT CTAGGTGAAA ATATGGTCAC TGGACTTAAA GTTGAAGATC AAATCATCTT 481 AGGCAAGCAA TACGTTCTAG TTGGCAGTGC TGGCACTGTT CGATCTCAGA GTGACACAGC 541 TTATGGG Predicted gene structure (within gDNA segment 21985 to 23740): Exon 1 22585 23130 ( 546 n); cDNA 1 547 ( 547 n); score: 0.995 MATCH C09HBa0099P03.1-1+ SGN-E253297+ 0.995 546 0.998 C PGS_C09HBa0099P03.1-1+_SGN-E253297+ (22585 23130) Alignment (genomic DNA sequence = upper lines): GATGCAGGTG CAGCAGCTCC CGTAGCAGTT CCCCTTCCTG ACATGGCCCT TCCAC-CTTC 22643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| GATGCAGGTG CAGCAGCTCC CGTAGCAGTT CCCCTTCCTG ACATGGCCCT TCCACGCTTC 60 TTTTGATAGT GATAATCCCG CCTATAGGTA CCGCTTCTTG GAGCCCACAT CACAGTTCCT 22703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGATAGT GATAATCCCG CCTATAGGTA CCGCTTCTTG GAGCCCACAT CACAGTTCCT 120 TGCAAGGCCT GTTCTGGACA CGCATGGTTG GGATCATGAT TGTGGCTATG ATGGTGTTAA 22763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAGGCCT GTTCTGGACA CGCATGGTTG GGATCATGAT TGTGGCTATG ATGGTGTTAA 180 CGTGGAACAA AGTTTAGCCA TTGCCAGTCG TTTCCCTGCT GCAGTTACTG TGCAAATCAC 22823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGAACAA AGTTTAGCCA TTGCCAGTCG TTTCCCTGCT GCAGTTACTG TGCAAATCAC 240 CAAAGATAAG AAGGATTTCA GTATCAATTT GGACTCTTCG ATTGCTGCTA AGCACGGAGA 22883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGATAAG AAGGATTTCA GTATCAATTT GGACTCTTCG ATTGCTGCTA AGCACGGAGA 300 AAATGGATCA ACCATGGCTG GCTTTGATAT TCAAAGCATA GGGAAGCAAC TTGCCTATAT 22943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGATCA ACCATGGCTG GCTTTGATAT TCAAAGCATA GGGAAGCAAC TTGCCTATAT 360 TGTCCGAGGA GAAACCAAAT TCAAAAGCTT GAAGAAGAAC AAGACTGCTT GCGGAATTTC 23003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCGAGGA GAAACCAAAT TCAAAAGCTT GAAGAAGAAC AAGACTGCTT GCGGAATTTC 420 TGTTACATTT CTAGGTGAAA ATATGGTCAC TGGACTTAAA GTTGAAGATC AAATCATCTT 23063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTACATTT CTAGGTGAAA ATATGGTCAC TGGACTTAAA GTTGAAGATC AAATCATCTT 480 AGGCAAGCAA TACGTTCTAG TTGGCAGTGC TGGCACTGTT CGATCTCAGA GTGACACAGC 23123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAAGCAA TACGTTCTAG TTGGCAGTGC TGGCACTGTT CGATCTCAGA GTGACACAGC 540 TTATGGG 23130 ||||||| TTATGGG 547 hqPGS_C09HBa0099P03.1-1+_SGN-E253297+ (22585 23130) ******************************************************************************** EST sequence 10 +strand 599 n (File: SGN-E214340+) 1 CCTTCCACCT TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TGGAGCCCAC 61 ATCACAGTTC CTTGCAAGGC CTGTTCTGGA CACGCATGGT TGGGATCATG ATTGTGGCTA 121 TGATGGTGTT AACGTGGAAC AAAGTTTAGC CATTGCCAGT CGTTTCCCTG CTGCAGTTAC 181 TGTGCAAATC ACCAAAGATA AGAAGGATTT CAGTATCAAT TTGGACTCTT CGATTGCTGC 241 TAAGCACGGA GAAAATGGAT CAACCATGGC TGGCTTTGAT ATTCAAAGCA TAGGGAAGCA 301 ACTTGCCTAT ATTGTCCGAG GAGAAACCAA ATTCAAAAGC TTGAAGAAGA ACAAGACTGC 361 TTGCGGAATT TCTGTTACAT TTCTAGGTGA AAATATGGTC ACTGGACTTA AAGTTGAAGA 421 TCAAATCATC TTAGGCAAGC AATACGTTCT AGTTGGCAGT GCTGGCACTG TTCGATCTCA 481 GAGTGACACA GCTTATGGGG CTAACTTTGA ACTGCAGAGG AGGGAGGCAG ATTTCCCAAT 541 CGGTCAGGTG CAATCTACAT TGTCTATGTC CGTCATAAAG TGGAGAGGTG ATTTGGCTC Predicted gene structure (within gDNA segment 22032 to 23840): Exon 1 22632 23230 ( 599 n); cDNA 1 599 ( 599 n); score: 1.000 MATCH C09HBa0099P03.1-1+ SGN-E214340+ 1.000 599 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E214340+ (22632 23230) Alignment (genomic DNA sequence = upper lines): CCTTCCACCT TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TGGAGCCCAC 22691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCCACCT TCTTTTGATA GTGATAATCC CGCCTATAGG TACCGCTTCT TGGAGCCCAC 60 ATCACAGTTC CTTGCAAGGC CTGTTCTGGA CACGCATGGT TGGGATCATG ATTGTGGCTA 22751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACAGTTC CTTGCAAGGC CTGTTCTGGA CACGCATGGT TGGGATCATG ATTGTGGCTA 120 TGATGGTGTT AACGTGGAAC AAAGTTTAGC CATTGCCAGT CGTTTCCCTG CTGCAGTTAC 22811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGTGTT AACGTGGAAC AAAGTTTAGC CATTGCCAGT CGTTTCCCTG CTGCAGTTAC 180 TGTGCAAATC ACCAAAGATA AGAAGGATTT CAGTATCAAT TTGGACTCTT CGATTGCTGC 22871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCAAATC ACCAAAGATA AGAAGGATTT CAGTATCAAT TTGGACTCTT CGATTGCTGC 240 TAAGCACGGA GAAAATGGAT CAACCATGGC TGGCTTTGAT ATTCAAAGCA TAGGGAAGCA 22931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCACGGA GAAAATGGAT CAACCATGGC TGGCTTTGAT ATTCAAAGCA TAGGGAAGCA 300 ACTTGCCTAT ATTGTCCGAG GAGAAACCAA ATTCAAAAGC TTGAAGAAGA ACAAGACTGC 22991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTGCCTAT ATTGTCCGAG GAGAAACCAA ATTCAAAAGC TTGAAGAAGA ACAAGACTGC 360 TTGCGGAATT TCTGTTACAT TTCTAGGTGA AAATATGGTC ACTGGACTTA AAGTTGAAGA 23051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCGGAATT TCTGTTACAT TTCTAGGTGA AAATATGGTC ACTGGACTTA AAGTTGAAGA 420 TCAAATCATC TTAGGCAAGC AATACGTTCT AGTTGGCAGT GCTGGCACTG TTCGATCTCA 23111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAATCATC TTAGGCAAGC AATACGTTCT AGTTGGCAGT GCTGGCACTG TTCGATCTCA 480 GAGTGACACA GCTTATGGGG CTAACTTTGA ACTGCAGAGG AGGGAGGCAG ATTTCCCAAT 23171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGACACA GCTTATGGGG CTAACTTTGA ACTGCAGAGG AGGGAGGCAG ATTTCCCAAT 540 CGGTCAGGTG CAATCTACAT TGTCTATGTC CGTCATAAAG TGGAGAGGTG ATTTGGCTC 23230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CGGTCAGGTG CAATCTACAT TGTCTATGTC CGTCATAAAG TGGAGAGGTG ATTTGGCTC 599 hqPGS_C09HBa0099P03.1-1+_SGN-E214340+ (22632 23230) ******************************************************************************** EST sequence 2 +strand 714 n (File: SGN-E316143+) 1 TTCTTTTGAT AGTGATAATC CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT 61 CCTTGCAAGG CCTGTTCTGG ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGGTGT 121 TAACGTGGAA CAAAGTTTAG CCATTGCCAG TCGTTTCCCT GCTGCAGTTA CTGTGCAAAT 181 CACCAAAGAT AATAATGATT TCAATATCAA TTTGGACTCT TCGATTGCTG CTAAGCACGG 241 AGAAAATGGA TCAACCATGG CTGGCTTTGA TATTCAAAGC ATATGGAAGC AACTTGCCTA 301 TATTGTCCGA GGAGAAACCA AATTCAAAAG CTTGAAGAAG AACAAGACTG CTTGCGGAAT 361 TTCTGTTACA TTTCTAGGTG AAAATATGGT CACTGGACTT AAAGTTGAAG ATCAAATCAT 421 CTTACGCAAG CAATACGTTC TAGTTGGCAG TGCTGGCACT GTTCGATCTC ACAGTGACAC 481 AGCTTATGGG GCTAACTTTG AACTGCACAC GAGGGAGGCA GATTTCCCAA TCGGGCAGGT 541 GCAATCTACA TTGTCTATGT CCGTCATAAA GTGGAGAGGT GATTTGGCTC TAGGTTTCAA 601 CAGTATGGCG CAATTCGCTG TGGGACGCAA TTCGNAAGTA GCTGTTCGAG CATGAATCAN 661 TAACAAGCTC AGTGGGCAAG TAACCGTGAG GACGAGCAGT TCAGACCATC TCTC Predicted gene structure (within gDNA segment 22041 to 23964): Exon 1 22641 23354 ( 714 n); cDNA 1 714 ( 714 n); score: 0.980 MATCH C09HBa0099P03.1-1+ SGN-E316143+ 0.980 714 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E316143+ (22641 23354) Alignment (genomic DNA sequence = upper lines): TTCTTTTGAT AGTGATAATC CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT 22700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGAT AGTGATAATC CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT 60 CCTTGCAAGG CCTGTTCTGG ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGGTGT 22760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGCAAGG CCTGTTCTGG ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGGTGT 120 TAACGTGGAA CAAAGTTTAG CCATTGCCAG TCGTTTCCCT GCTGCAGTTA CTGTGCAAAT 22820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACGTGGAA CAAAGTTTAG CCATTGCCAG TCGTTTCCCT GCTGCAGTTA CTGTGCAAAT 180 CACCAAAGAT AAGAAGGATT TCAGTATCAA TTTGGACTCT TCGATTGCTG CTAAGCACGG 22880 |||||||||| || || |||| ||| |||||| |||||||||| |||||||||| |||||||||| CACCAAAGAT AATAATGATT TCAATATCAA TTTGGACTCT TCGATTGCTG CTAAGCACGG 240 AGAAAATGGA TCAACCATGG CTGGCTTTGA TATTCAAAGC ATAGGGAAGC AACTTGCCTA 22940 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AGAAAATGGA TCAACCATGG CTGGCTTTGA TATTCAAAGC ATATGGAAGC AACTTGCCTA 300 TATTGTCCGA GGAGAAACCA AATTCAAAAG CTTGAAGAAG AACAAGACTG CTTGCGGAAT 23000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGTCCGA GGAGAAACCA AATTCAAAAG CTTGAAGAAG AACAAGACTG CTTGCGGAAT 360 TTCTGTTACA TTTCTAGGTG AAAATATGGT CACTGGACTT AAAGTTGAAG ATCAAATCAT 23060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTTACA TTTCTAGGTG AAAATATGGT CACTGGACTT AAAGTTGAAG ATCAAATCAT 420 CTTAGGCAAG CAATACGTTC TAGTTGGCAG TGCTGGCACT GTTCGATCTC AGAGTGACAC 23120 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CTTACGCAAG CAATACGTTC TAGTTGGCAG TGCTGGCACT GTTCGATCTC ACAGTGACAC 480 AGCTTATGGG GCTAACTTTG AACTGCAGAG GAGGGAGGCA GATTTCCCAA TCGGTCAGGT 23180 |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| |||| ||||| AGCTTATGGG GCTAACTTTG AACTGCACAC GAGGGAGGCA GATTTCCCAA TCGGGCAGGT 540 GCAATCTACA TTGTCTATGT CCGTCATAAA GTGGAGAGGT GATTTGGCTC TAGGTTTCAA 23240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATCTACA TTGTCTATGT CCGTCATAAA GTGGAGAGGT GATTTGGCTC TAGGTTTCAA 600 CAGTATGGCG CAATTCGCTG TGGGACGCAA TTCGAAGGTA GCTGTTCGAG CAGGAATCAA 23300 |||||||||| |||||||||| |||||||||| |||| | ||| |||||||||| || |||||| CAGTATGGCG CAATTCGCTG TGGGACGCAA TTCGNAAGTA GCTGTTCGAG CATGAATCAN 660 TAACAAGCTC AGTGGGCAAG TAACCGTGAG GACAAGCAGT TCAGACCATC TCTC 23354 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||| TAACAAGCTC AGTGGGCAAG TAACCGTGAG GACGAGCAGT TCAGACCATC TCTC 714 hqPGS_C09HBa0099P03.1-1+_SGN-E316143+ (22641 23354) ******************************************************************************** EST sequence 1 +strand 625 n (File: SGN-E316036+) 1 TTCTTTTGAT AGTGATAATC CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT 61 CCTTGCAAGG CCTGTTCTGG ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGGTGT 121 TAACGTGGAA CAAAGTTTAG CCATTGCCAG TCGTTTCCCT GCTGCAGTTA CTGTGCAAAT 181 CACCAAAGAT AAGAAGGATT TCAGTATCAA TTTGGACTCT TCGATTGCTG CTAAGCACGG 241 AGAAAATGGA TCAACCATGG CTGGCTTTGA TATTCAAAGC ATAGGGAAGC AACTTGCCTA 301 TATTGTCCGA GGAGAAACCA AATTCAAAAG CTTGAAGAAG AACAAGACTG CTTGCGGAAT 361 TTCTGTTACA TTTCTAGGTG AAAATATGGT CACTGGACTT AAAGTTGAAG ATCAAATCAT 421 CTTAGGCAAG CAATACGTTC TAGTTGGCAG TGCTGGCACT GTTCGATCTC AGAGTGACAC 481 AGCTTATGGG GCTAACTTTG AACTGCAGAG GAGGGAGGCA GATTTCCCAA TCGGTCAGGT 541 GCAATCTACA TTGTCTATGT CCGTCATAAA GTGGAGAAGT GATTTGGCTC TANGTTTNCA 601 CAGTATGGCG CAATTCGCTG TGGGA Predicted gene structure (within gDNA segment 22041 to 24307): Exon 1 22641 23265 ( 625 n); cDNA 1 625 ( 625 n); score: 0.994 MATCH C09HBa0099P03.1-1+ SGN-E316036+ 0.994 625 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E316036+ (22641 23265) Alignment (genomic DNA sequence = upper lines): TTCTTTTGAT AGTGATAATC CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT 22700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTGAT AGTGATAATC CCGCCTATAG GTACCGCTTC TTGGAGCCCA CATCACAGTT 60 CCTTGCAAGG CCTGTTCTGG ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGGTGT 22760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTGCAAGG CCTGTTCTGG ACACGCATGG TTGGGATCAT GATTGTGGCT ATGATGGTGT 120 TAACGTGGAA CAAAGTTTAG CCATTGCCAG TCGTTTCCCT GCTGCAGTTA CTGTGCAAAT 22820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACGTGGAA CAAAGTTTAG CCATTGCCAG TCGTTTCCCT GCTGCAGTTA CTGTGCAAAT 180 CACCAAAGAT AAGAAGGATT TCAGTATCAA TTTGGACTCT TCGATTGCTG CTAAGCACGG 22880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCAAAGAT AAGAAGGATT TCAGTATCAA TTTGGACTCT TCGATTGCTG CTAAGCACGG 240 AGAAAATGGA TCAACCATGG CTGGCTTTGA TATTCAAAGC ATAGGGAAGC AACTTGCCTA 22940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAATGGA TCAACCATGG CTGGCTTTGA TATTCAAAGC ATAGGGAAGC AACTTGCCTA 300 TATTGTCCGA GGAGAAACCA AATTCAAAAG CTTGAAGAAG AACAAGACTG CTTGCGGAAT 23000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGTCCGA GGAGAAACCA AATTCAAAAG CTTGAAGAAG AACAAGACTG CTTGCGGAAT 360 TTCTGTTACA TTTCTAGGTG AAAATATGGT CACTGGACTT AAAGTTGAAG ATCAAATCAT 23060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTTACA TTTCTAGGTG AAAATATGGT CACTGGACTT AAAGTTGAAG ATCAAATCAT 420 CTTAGGCAAG CAATACGTTC TAGTTGGCAG TGCTGGCACT GTTCGATCTC AGAGTGACAC 23120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGGCAAG CAATACGTTC TAGTTGGCAG TGCTGGCACT GTTCGATCTC AGAGTGACAC 480 AGCTTATGGG GCTAACTTTG AACTGCAGAG GAGGGAGGCA GATTTCCCAA TCGGTCAGGT 23180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTATGGG GCTAACTTTG AACTGCAGAG GAGGGAGGCA GATTTCCCAA TCGGTCAGGT 540 GCAATCTACA TTGTCTATGT CCGTCATAAA GTGGAGAGGT GATTTGGCTC TAGGTTTCAA 23240 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| || |||| | GCAATCTACA TTGTCTATGT CCGTCATAAA GTGGAGAAGT GATTTGGCTC TANGTTTNCA 600 CAGTATGGCG CAATTCGCTG TGGGA 23265 |||||||||| |||||||||| ||||| CAGTATGGCG CAATTCGCTG TGGGA 625 hqPGS_C09HBa0099P03.1-1+_SGN-E316036+ (22641 23265) ******************************************************************************** EST sequence 8 +strand 434 n (File: SGN-E281062+) 1 TTGAACTGCA GAGGAGGGAG GCAGATTTCC CAATCGGTCA GGTGCAATCT ACATTGTCTA 61 TGTCCGTCAT AAAGTGGAGA GGTGATTTGG CTCTAGGTTT CAACAGTATG GCGCAATTCG 121 CTGTGGGACG CAATTCGAAG GTAGCTGTTC GAGCAGGAAT CAATAACAAG CTCAGTGGGC 181 AAGTAACCGT GAGGACAAGC AGTTCAGACC ATCTCTCTCT TGCACTTACT GCTATTATTC 241 CAACTGCAAT TGGCATCTAC AGGAAGCTTT GGCCGGATGC TGGCGAGAAG TACTCAATCT 301 ACTAAATTTC ATTTCCATAT CAGCATTGCA TTTTTGGTTC ATTAGACCTT ACATGATGAC 361 ATATTGTCTT TGTCAGTTCA TTGAATAATG CTTCTGTTAA TTTCCCATCT ATTTAGGATT 421 CCTACTGTTA TGAG Predicted gene structure (within gDNA segment 22538 to 24181): Exon 1 23138 23571 ( 434 n); cDNA 1 434 ( 434 n); score: 1.000 MATCH C09HBa0099P03.1-1+ SGN-E281062+ 1.000 434 1.000 C PGS_C09HBa0099P03.1-1+_SGN-E281062+ (23138 23571) Alignment (genomic DNA sequence = upper lines): TTGAACTGCA GAGGAGGGAG GCAGATTTCC CAATCGGTCA GGTGCAATCT ACATTGTCTA 23197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTGCA GAGGAGGGAG GCAGATTTCC CAATCGGTCA GGTGCAATCT ACATTGTCTA 60 TGTCCGTCAT AAAGTGGAGA GGTGATTTGG CTCTAGGTTT CAACAGTATG GCGCAATTCG 23257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCCGTCAT AAAGTGGAGA GGTGATTTGG CTCTAGGTTT CAACAGTATG GCGCAATTCG 120 CTGTGGGACG CAATTCGAAG GTAGCTGTTC GAGCAGGAAT CAATAACAAG CTCAGTGGGC 23317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGGGACG CAATTCGAAG GTAGCTGTTC GAGCAGGAAT CAATAACAAG CTCAGTGGGC 180 AAGTAACCGT GAGGACAAGC AGTTCAGACC ATCTCTCTCT TGCACTTACT GCTATTATTC 23377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAACCGT GAGGACAAGC AGTTCAGACC ATCTCTCTCT TGCACTTACT GCTATTATTC 240 CAACTGCAAT TGGCATCTAC AGGAAGCTTT GGCCGGATGC TGGCGAGAAG TACTCAATCT 23437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTGCAAT TGGCATCTAC AGGAAGCTTT GGCCGGATGC TGGCGAGAAG TACTCAATCT 300 ACTAAATTTC ATTTCCATAT CAGCATTGCA TTTTTGGTTC ATTAGACCTT ACATGATGAC 23497 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAAATTTC ATTTCCATAT CAGCATTGCA TTTTTGGTTC ATTAGACCTT ACATGATGAC 360 ATATTGTCTT TGTCAGTTCA TTGAATAATG CTTCTGTTAA TTTCCCATCT ATTTAGGATT 23557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTGTCTT TGTCAGTTCA TTGAATAATG CTTCTGTTAA TTTCCCATCT ATTTAGGATT 420 CCTACTGTTA TGAG 23571 |||||||||| |||| CCTACTGTTA TGAG 434 hqPGS_C09HBa0099P03.1-1+_SGN-E281062+ (23138 23571) ******************************************************************************** EST sequence 24 -strand 522 n (File: SGN-E321451-) 1 ATTTCCCAAT CGGTCAGGTG CAATCTACAT TGTTTATGTC CGTCATAAAG TGGAGAGGGG 61 ATTTGGCTCT AGGTTTCAAC AGTATGGCGC AATTCGCTGT GGGACGCAAT TCGAAGGTAG 121 CTGTTCGAGC AGGAATCAAT AACAAGCTCA GTGGGCAAGT AACCGTGAGG ACAAGCAGTT 181 CAGACCATCT TTCTCTTGCA CTTACTGCTA TTATTCCAAC TGCAATTGGC ATTTACAGGA 241 AGCTTTGGCC GGATGCTGGC GAGAAGTACT CAATCTACTA AATTTCATTT CCATATCAGC 301 ATTGCATTTT TGGTTCATTA GACCTTCCAT GATGACATAT TGTCTTTGTC AGTTCATTGA 361 ATAATGCTTC TGTTAATTTC CCATCTATTT AGGATTCCTA CTGTTATGAG TTATAAGTCA 421 ATTTTGAGTG ATTGAATGTA CTTTTTTGCC AGATGAAATG AAGAGGTTTG TGTTGCTTTA 481 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAC TCAGACTAGT CT Predicted gene structure (within gDNA segment 22552 to 24661): Exon 1 23162 23640 ( 479 n); cDNA 1 479 ( 479 n); score: 0.990 PPA cDNA 480 510 MATCH C09HBa0099P03.1-1+ SGN-E321451- 0.990 479 0.918 C PGS_C09HBa0099P03.1-1+_SGN-E321451- (23162 23640) Alignment (genomic DNA sequence = upper lines): ATTTCCCAAT CGGTCAGGTG CAATCTACAT TGTCTATGTC CGTCATAAAG TGGAGAGGTG 23221 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||| | ATTTCCCAAT CGGTCAGGTG CAATCTACAT TGTTTATGTC CGTCATAAAG TGGAGAGGGG 60 ATTTGGCTCT AGGTTTCAAC AGTATGGCGC AATTCGCTGT GGGACGCAAT TCGAAGGTAG 23281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGCTCT AGGTTTCAAC AGTATGGCGC AATTCGCTGT GGGACGCAAT TCGAAGGTAG 120 CTGTTCGAGC AGGAATCAAT AACAAGCTCA GTGGGCAAGT AACCGTGAGG ACAAGCAGTT 23341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCGAGC AGGAATCAAT AACAAGCTCA GTGGGCAAGT AACCGTGAGG ACAAGCAGTT 180 CAGACCATCT CTCTCTTGCA CTTACTGCTA TTATTCCAAC TGCAATTGGC ATCTACAGGA 23401 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| || ||||||| CAGACCATCT TTCTCTTGCA CTTACTGCTA TTATTCCAAC TGCAATTGGC ATTTACAGGA 240 AGCTTTGGCC GGATGCTGGC GAGAAGTACT CAATCTACTA AATTTCATTT CCATATCAGC 23461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTGGCC GGATGCTGGC GAGAAGTACT CAATCTACTA AATTTCATTT CCATATCAGC 300 ATTGCATTTT TGGTTCATTA GACCTTACAT GATGACATAT TGTCTTTGTC AGTTCATTGA 23521 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ATTGCATTTT TGGTTCATTA GACCTTCCAT GATGACATAT TGTCTTTGTC AGTTCATTGA 360 ATAATGCTTC TGTTAATTTC CCATCTATTT AGGATTCCTA CTGTTATGAG TTATAAGTCA 23581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATGCTTC TGTTAATTTC CCATCTATTT AGGATTCCTA CTGTTATGAG TTATAAGTCA 420 ATTTTGAGTG ATTGAATGTA CTTTTTTGCC AGATGAAATG AAGAGGTTTG TGTTGCTTT 23640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTTTGAGTG ATTGAATGTA CTTTTTTGCC AGATGAAATG AAGAGGTTTG TGTTGCTTT 479 hqPGS_C09HBa0099P03.1-1+_SGN-E321451- (23162 23640) ******************************************************************************** EST sequence 12 +strand 580 n (File: SGN-E318957+) 1 AAGGGATGGT TTTTGGAGAG AATTTTTTTT TTTTACATCT TGTGATAGAA AAGAATTATT 61 GAAAGAGTTT AGTCATAAGA AGATTTTACA ATAGTTTAAG CACACCTATA TATCTATTGA 121 AGTTGAATTA AAAACAAAAG GATTGCGGGG TTTTTGATTA TCATTTGAAC TCGAAGTTGT 181 GTAGTGGAAG GTCATCCCCT TGCTCGTTTC GTCTCCAGCT CGCTGCCCCG AAGAAGTTGA 241 GTTTTAGGCT GAATTGTCTT GGCAAGATAA GACGAGTGCC ATCAAGTCCA TTTTTGGTTC 301 GTGACATCCG TTTGTATATT TTGTTTGCAA ATATACAAAC AAGGTAAGTA TATACAAATT 361 CTGCATTTAT ACATATAAGA AATTTTCAGA ACTATTGTGC TTGTCAATAT ACAAACATAG 421 TAATTTATTA CTCCCTTCGT TTCAAAAGGA TGACCTAGTT TGACTTGGAA CAGAGTGTAA 481 GAAAAGAAAG AAAACTCTAA TCTTGTGGTT CTAAATTAAA GTTATGTCAA ATGTACCAAA 541 ATGCTCTTTA ATCTTGTGGT CTTAAATATG ACACGTGGAA Predicted gene structure (within gDNA segment 23324 to 29712): Exon 1 24419 24455 ( 37 n); cDNA 362 398 ( 37 n); score: 0.568 Intron 1 24456 24879 ( 424 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 24880 24904 ( 25 n); cDNA 399 420 ( 22 n); score: 0.800 Intron 2 24905 28813 (3909 n); Pd: 0.996 (s: 0), Pa: 0.000 (s: 0.78) Exon 3 28814 28976 ( 163 n); cDNA 421 580 ( 160 n); score: 0.847 PPA cDNA 34 22 MATCH C09HBa0099P03.1-1+ SGN-E318957+ 0.847 225 0.388 C PGS_C09HBa0099P03.1-1+_SGN-E318957+ (24419 24455,24880 24904,28814 28976) Alignment (genomic DNA sequence = upper lines): TGCATAGAAG CAATTCATCA TTTTTTAGTA CGAGTAGATA TCATTAGCTA TTTGCATATT 24478 ||||| | || | | | |||| || | | | | TGCATTTATA CATATAAGAA ATTTTCAGAA CTATTGT... .......... .......... 398 GTAAGCAAAT ATGGAGAAAC AACTAACGAT CATGATGGAT CTTGAGTCAT TTAAAAAAAT 24538 .......... .......... .......... .......... .......... .......... 398 GTATATTGTT GCTACTTCTT CGTGTCAGAT AAAAATAAAA TAGGGTGGTG GTTAGAGAAA 24598 .......... .......... .......... .......... .......... .......... 398 ATTACGTAAT AAAATAAATT TATACTATTT GATTACATAT CATAGTTGTA GTTTGCTATT 24658 .......... .......... .......... .......... .......... .......... 398 ATTATCTTTC GCGACAAACA TTGTATATTA ATTACATGGG CCGACTTCGA ATTTGTATAA 24718 .......... .......... .......... .......... .......... .......... 398 TTAGTCACGT TTGTATATGT ATAATTCGCC AGAATATACA AATACATATG TATAATATAC 24778 .......... .......... .......... .......... .......... .......... 398 AATTATTTAA CCTACATATG TATACAGTCA CCTCTCTTCC TAGTCTCGCT CGCCTCTCTC 24838 .......... .......... .......... .......... .......... .......... 398 CTCCCTTTTC CAATCTCCTC TCTCCTCTCT CTCCCAATCT CTCTTGCCAT ATATACAAAT 24898 |||| || |||||||| .......... .......... .......... .......... .GCTTGTCA- ATATACAA-- 414 ACATAGGTAT AATATACAAA TATCTAACCA ATATACATAT ATAATTCACC TTTCTCCCAC 24958 |||||| ACATAG.... .......... .......... .......... .......... .......... 420 TCTTTTCTCC CCTCTCTCGC CTCTCTCGTC ACTCTCCTAG TCTCGCTCAT CTCTTTTCTT 25018 .......... .......... .......... .......... .......... .......... 420 CATATAACAT GTAGCTACAA ATTATAATTA TCAAACTATA TCTATGGAGA GTAATTAATT 25078 .......... .......... .......... .......... .......... .......... 420 ATATTTAAGT GGCTATATGT GAAAATTTCT TCGATTTAAA CACGTGAGGC TTAAAAATAT 25138 .......... .......... .......... .......... .......... .......... 420 GATGGAAATG ATCTCGGGAC AATGTACAAA TATTTTCCTA GACTGATCGA AATCTAATAA 25198 .......... .......... .......... .......... .......... .......... 420 ACGCACGTCT TATTCAACTT TGTGAAAAGT TACAAAATCA AATCATTTCT TTTGATGTTC 25258 .......... .......... .......... .......... .......... .......... 420 TTTACCATCG ATACTCCCTA AAACCTCTTT ATTCTTGTAT TTTGTTTCAC CTGCTTGATT 25318 .......... .......... .......... .......... .......... .......... 420 AAAAGTTGAT ACAATATGAT ATGTTCAAGA ATTTAAATTT GGTGATTTAG GATAATTACT 25378 .......... .......... .......... .......... .......... .......... 420 AAATACAATA TATTAAGGAA CTTAAGAAGT GGCTCACGAT ATAAAGATGA ACAATTACTA 25438 .......... .......... .......... .......... .......... .......... 420 CCGACAAACA TAAACCAAGT TATTAACCTG ACGGCCCATT AAGCCCCCCC CCCCCCCCCC 25498 .......... .......... .......... .......... .......... .......... 420 CCCCAGTACA GTAATGTAAA ATGGTCATTG CGCCGGAGCA ACAGTGCCGT CGGTCAAGGG 25558 .......... .......... .......... .......... .......... .......... 420 AACGGACTGC TCGTTTTCAG CGGTGGCGCC GCCTTCAAAC ACCTTCGCGA TCCTCTCTAC 25618 .......... .......... .......... .......... .......... .......... 420 GGGAATAATC GGTAAATAAT GCGCCGCCGT ATAGCCGTTC TCCGACGCAT ATGTCACCGC 25678 .......... .......... .......... .......... .......... .......... 420 TTGATTGTAT TTCTCACTCC AATAAGCAGC CGTCGGCACC AAAATCTGAG CCACTTGAGG 25738 .......... .......... .......... .......... .......... .......... 420 GAACAAAGGA AGCTTATTCA GAGATCTCCA TGCCAAAACC GCATTTTTCT CGATCACTGG 25798 .......... .......... .......... .......... .......... .......... 420 CTCGTATTTT GTGTATAGCT CCTTGACTGT GGGTTCGTAC TTTGTGTAGA GTGTTTTAGC 25858 .......... .......... .......... .......... .......... .......... 420 TACGTTGCTC GCTGTGTCCA CTAAGCCATC GTGCTGTACC TCGCCGGCGA GATCTCGAGC 25918 .......... .......... .......... .......... .......... .......... 420 TAATTCTGGA GCCTTCTGAG CTATTAACAG AGCTTTAGAT GATGTCTGCT TTAGTAGAGA 25978 .......... .......... .......... .......... .......... .......... 420 AGGCACATGG CTTTCAACTT CTGTCATCAA GTCTGCAACC TGCATAGATT CAAACTTTCA 26038 .......... .......... .......... .......... .......... .......... 420 AATCCTTGCC ACTGAAATTC GAGTTCAAAG TTTACAACAT TCGTTTCTAT GTTAGTGAAT 26098 .......... .......... .......... .......... .......... .......... 420 TATCATGTGC ATGTCCATGC ACATTCTTCC AGATTGAGCT AGATCTAGGA TTTCGATTAG 26158 .......... .......... .......... .......... .......... .......... 420 TTGGAGAAGA CAATTTCTGA ATGCCATACA AATACCTTCT CAATTCCAGC AAACTTTCAG 26218 .......... .......... .......... .......... .......... .......... 420 CTGCAAAATA AGTATGGTGT AGACAGTATG GGTAAAATTC ATTTTGGAGA AAGAAGGTGA 26278 .......... .......... .......... .......... .......... .......... 420 ACCTTTAGGT CGATGAACTT GAGGAGATTG AAAGGAACGT TATGGAACTT CTCATAAACC 26338 .......... .......... .......... .......... .......... .......... 420 GGTCCGATAA CAGTTTTAAC AGTGGCTTCT ACGGCCTGTA CACCAGGTTT CAACGGACCG 26398 .......... .......... .......... .......... .......... .......... 420 GAGTTTTCTT TGCCGTATTC ATACAAAGTT GAGAAGCAAA CAATCACATA GATCGCTGCA 26458 .......... .......... .......... .......... .......... .......... 420 ACTTGAACGA AATCCAGATA TTTAAGTTTC CTCTCATCTT CTGCTACCTT CAATTATAAA 26518 .......... .......... .......... .......... .......... .......... 420 CACAAATCAG GTACAGATTT AAAACTCAAA AATTCTGAAT CTCACCTATG TTGAGAAAAC 26578 .......... .......... .......... .......... .......... .......... 420 ACATCTCGAA TTAAATTCAA CAAATTATAC TAGTATTCTA CCTGTCAATG CATTTAATCA 26638 .......... .......... .......... .......... .......... .......... 420 AATCTAACTA CTCTTTCTCG ATATATTTTT TATCAGTCGA GTGACCATAT GTATTGCGAA 26698 .......... .......... .......... .......... .......... .......... 420 GATGAAATTG GCAACCATGA AGGCATTGCA CAACAACTCA TTCCTAATTT AACACCTCAA 26758 .......... .......... .......... .......... .......... .......... 420 AATAAGAAGA TAACAATTCA TTCTGGCAAT TAAATTGAGT AATTGAACAA CTTAGATCTA 26818 .......... .......... .......... .......... .......... .......... 420 ATATGTGAAG CCTGAATAAC AGAATATGAA GTTACAACCA CGCTACAACG GTGTGTGTTT 26878 .......... .......... .......... .......... .......... .......... 420 GAAAATTAAA ATTGATTTAA CTGTAATATC ATGATAAACG TAGAAGACAT TGTATACTTA 26938 .......... .......... .......... .......... .......... .......... 420 CTGGATCAGC TGGATCAGTA CTAGTAGGCG GCGTCGTGTT TGCTGGATCA GTACTAGCAG 26998 .......... .......... .......... .......... .......... .......... 420 GCGGCGTCGT GCTTGCTGGA TCAGTCGTAG CAGGTGGCGC CGTGCTTGCT GGATCAGTAG 27058 .......... .......... .......... .......... .......... .......... 420 GCGGCGTTGC AGCTGCGTCA GCCATGGTAG AGATGGAGAA AAACTAAGTA ATGGAGTTTG 27118 .......... .......... .......... .......... .......... .......... 420 TACAGGAGAG CTTCGAAAAG GCAGGCAGTT GGCAAGCCCT CTTTTATAGC GGACGGGGCA 27178 .......... .......... .......... .......... .......... .......... 420 CGTAATAATC GTGTGCGGAG AAGTCGATGA AAATTTTACA GGTTTTCAAT TAATGTTTAA 27238 .......... .......... .......... .......... .......... .......... 420 AACACAAAAA TAAAGTGAAT AAATATTCTT AATTAAAGTG ATTAGTATTC ATGACCATAA 27298 .......... .......... .......... .......... .......... .......... 420 ATAGAAAGAA ATTATTTAAT AATATTTTTT TGTTAATTTT TAAATAAGGA AAATTACACA 27358 .......... .......... .......... .......... .......... .......... 420 AATTGTCCTA AGTTAAGACT TTACTCAATT TATTTACTTT GATGGAACAC ATAATCCAAA 27418 .......... .......... .......... .......... .......... .......... 420 TTATTTACCT TACTTTCCTC TTGTTCAATC ACTAAATTTT TTTTTAATTC TTGATACGAT 27478 .......... .......... .......... .......... .......... .......... 420 TTAAATACAC TTCGATGATA TTAATCAGTA ATTGAGCAGT TTCTTCTTTG ATGTCATCAG 27538 .......... .......... .......... .......... .......... .......... 420 AATGATATTA AAGAGTAACT GAGTAGAGTT TTCACTGAAA CACTGTCTCT TTTTCTAAAA 27598 .......... .......... .......... .......... .......... .......... 420 TTTTACTCTA ATGGTATCAA AGAATAAGTG AATCACTGCA CTTTTCTTCC TCTTTGATAC 27658 .......... .......... .......... .......... .......... .......... 420 CACGAGTGTG TGTCTATCTA TATATATACT TTGATGGTAT CGAATATTAA GGACACATTA 27718 .......... .......... .......... .......... .......... .......... 420 GTAGTTAAGA ATAGGGGTAT GAGAACAGTG GGGTAGCCAC ATTATGGTCA GAGTGTCCAA 27778 .......... .......... .......... .......... .......... .......... 420 ATTGACACGA TTCGTCGGGA AAAAAAAATA CAAGTAAAAT GACATACAAA ATTATTAAAT 27838 .......... .......... .......... .......... .......... .......... 420 AACATATTTT GAACACTCTT AACCTAACAA GTTGTTATTG CCTAGTGATT TCGCCTCTTT 27898 .......... .......... .......... .......... .......... .......... 420 GGAATGAGTA ACTGCTTATA TGTTCGAATC TCATTAGTTC TACTTTTAAA AGAGTTCTTA 27958 .......... .......... .......... .......... .......... .......... 420 TTGTGCTTAA TCTGGACACT CTTTGTGAAA TTGTTGATTT CGCCACTAAT ATGAAAATAA 28018 .......... .......... .......... .......... .......... .......... 420 GGAGGATAAC CACTTATAAA TAGTTTTTCT TTTTTGATAT AAATGTTGTT TTCTCTTTAA 28078 .......... .......... .......... .......... .......... .......... 420 AATATTACTC TCTTCGTTTA ATAATAAAGA ATAGCCTACT CTTTTATTTG GTCTGTTTAA 28138 .......... .......... .......... .......... .......... .......... 420 ATAAAAAAGT CCCCTTTTTT TACAATTCTT TAAATTCAAC TTTTCACGTG ATATATTTAA 28198 .......... .......... .......... .......... .......... .......... 420 CACCATACAA TCAATTTTTT AATACATTTG ATACAACTTT AATTTAAAAC TAAAAAAATT 28258 .......... .......... .......... .......... .......... .......... 420 ATTTTATTTT AATTTTTTTA AACCAACATT TTTATAAAAT GAAAGGAGTA TAATTCTTTA 28318 .......... .......... .......... .......... .......... .......... 420 ACCCTTTTAA TTATTATCGG TTACACTTTA ATGCATGTCA CTTTTTCAGT AAGTAGGTTA 28378 .......... .......... .......... .......... .......... .......... 420 TTCTCACGTG ATTAGCTAGC TGTTCTAGAA TCTCGACAGA ATCACGTATA TAACCTGTTT 28438 .......... .......... .......... .......... .......... .......... 420 ATTTTTATTT TTATTTTGTT TATTAATAAA AATAATTAAA TTTAATAGGA TCGGATCCCG 28498 .......... .......... .......... .......... .......... .......... 420 GGTATTAACT TTTATGCGAA GATTCATTTT AGATTGTCTA GATTTATAGT TGTCCTCAAT 28558 .......... .......... .......... .......... .......... .......... 420 TATTTTTTAT TTTTTTCTTT AAAAAGGTAA TTATTTTAAT TAATTCACTT GAAAATATAA 28618 .......... .......... .......... .......... .......... .......... 420 ATAATTATGT AAAATTCAAA AAGAGTTTTT TAAAGTATAA ATTAGTAAAA GTAACATTTT 28678 .......... .......... .......... .......... .......... .......... 420 TATTTATGGT TTTTAAAGAG ACGTATAAAA AAAAAATAGA CAATTACTCT TCAATGCATT 28738 .......... .......... .......... .......... .......... .......... 420 ACTTTTTTGT GTGAATTTAG ATTAGTCAGG TTCTAATATA AATATTAAAA ATGAGATAGT 28798 .......... .......... .......... .......... .......... .......... 420 ATATTGTATA TTCTCTTATT TCATATTTTC TCCGTTTAAA AAAGAATGAA CTAGTTTGAC 28858 | ||| | || | | | ||||| | |||| |||| |||||||||| .......... .....TAATT TATTACTCCC TTCGTTT-CA AAAGGATGAC CTAGTTTGAC 464 TTGGAATGAA GTTTAAGAAA AGAAAGAAGA CTTTTTAATC TTGTGGTTCT AAATTAAAGT 28918 |||||| | || ||||||| |||||||| | | | ||||| |||||||||| |||||||||| TTGGAACAGA GTGTAAGAAA AGAAAGAAAA C--TCTAATC TTGTGGTTCT AAATTAAAGT 522 TATGTCAAAT GTATCAAAAT GTTCTTAAAT CTTGTGGTCT TAAACATGTC ACGTGAAA 28976 |||||||||| ||| |||||| | |||| ||| |||||||||| |||| ||| | ||||| || TATGTCAAAT GTACCAAAAT GCTCTTTAAT CTTGTGGTCT TAAATATGAC ACGTGGAA 580 hqPGS_C09HBa0099P03.1-1+_SGN-E318957+ (24880 24904,28814 28976) ******************************************************************************** EST sequence 23 +strand 597 n (File: SGN-E333037+) 1 TTAGTTTTTC TCCATCTCTA CCATGGCTGA CGCAGCTGCA ACGCCGCCTA CTGATCCAGC 61 AAGCACGGCG CCACCTGCTA CGACTGATCC AGCAAGCACG ACGCCGCCTG CTAGTACTGA 121 TCCAGCAAAC ACGACGCCGC CTACTAGTAC TGATCCAGCT GATCCAGTAG CAGAAGATGA 181 GAGGAAACTT AAATATCTGG ATTTCGTTCA AGTTGCAGCG ATCTATGTGA TTGTTTGCTT 241 CTCAACTTTG TATGAATACG GCAAAGAAAA CTCCGGTCCG TTGAAACCTG GTGTACAGGC 301 CGTAGAAGCC ACTGTTAAAA CTGTTATCGG ACCGGTTTAT GAGAAGTTCC ATAACGTTCC 361 TTTCAATCTC CTCAAGTTCA TCGACCTAAA GGTTGCAGAC TTGATGACAG AAGTTGAAAG 421 CCATGTGCCT TCTCTACTAA AGCAGACATC ATCTAAAGCT CTGTTAATAG CTCAGAAGGC 481 TCCAGAATTA GCTCGAGATC TCGCCGGCGA GGTACAGCAC GATGGCTTAG TGGACACAGC 541 GAGCAACGTA GCTAAAACAC TCTACACAAA GTACGAACCC ACAGTCAAGG AGCTATA Predicted gene structure (within gDNA segment 27705 to 25202): Exon 1 27105 26940 ( 166 n); cDNA 1 166 ( 166 n); score: 1.000 Intron 1 26939 26506 ( 434 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 26505 26281 ( 225 n); cDNA 167 391 ( 225 n); score: 1.000 Intron 2 26280 26018 ( 263 n); Pd: 0.994 (s: 1.00), Pa: 0.958 (s: 1.00) Exon 3 26017 25812 ( 206 n); cDNA 392 597 ( 206 n); score: 1.000 MATCH C09HBa0099P03.1-1- SGN-E333037+ 1.000 597 1.000 C PGS_C09HBa0099P03.1-1-_SGN-E333037+ (27105 26940,26505 26281,26017 25812) Alignment (genomic DNA sequence = upper lines): TTAGTTTTTC TCCATCTCTA CCATGGCTGA CGCAGCTGCA ACGCCGCCTA CTGATCCAGC 27046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTTTTC TCCATCTCTA CCATGGCTGA CGCAGCTGCA ACGCCGCCTA CTGATCCAGC 60 AAGCACGGCG CCACCTGCTA CGACTGATCC AGCAAGCACG ACGCCGCCTG CTAGTACTGA 26986 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCACGGCG CCACCTGCTA CGACTGATCC AGCAAGCACG ACGCCGCCTG CTAGTACTGA 120 TCCAGCAAAC ACGACGCCGC CTACTAGTAC TGATCCAGCT GATCCAGTAA GTATACAATG 26926 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCAGCAAAC ACGACGCCGC CTACTAGTAC TGATCCAGCT GATCCA.... .......... 166 TCTTCTACGT TTATCATGAT ATTACAGTTA AATCAATTTT AATTTTCAAA CACACACCGT 26866 .......... .......... .......... .......... .......... .......... 166 TGTAGCGTGG TTGTAACTTC ATATTCTGTT ATTCAGGCTT CACATATTAG ATCTAAGTTG 26806 .......... .......... .......... .......... .......... .......... 166 TTCAATTACT CAATTTAATT GCCAGAATGA ATTGTTATCT TCTTATTTTG AGGTGTTAAA 26746 .......... .......... .......... .......... .......... .......... 166 TTAGGAATGA GTTGTTGTGC AATGCCTTCA TGGTTGCCAA TTTCATCTTC GCAATACATA 26686 .......... .......... .......... .......... .......... .......... 166 TGGTCACTCG ACTGATAAAA AATATATCGA GAAAGAGTAG TTAGATTTGA TTAAATGCAT 26626 .......... .......... .......... .......... .......... .......... 166 TGACAGGTAG AATACTAGTA TAATTTGTTG AATTTAATTC GAGATGTGTT TTCTCAACAT 26566 .......... .......... .......... .......... .......... .......... 166 AGGTGAGATT CAGAATTTTT GAGTTTTAAA TCTGTACCTG ATTTGTGTTT ATAATTGAAG 26506 .......... .......... .......... .......... .......... .......... 166 GTAGCAGAAG ATGAGAGGAA ACTTAAATAT CTGGATTTCG TTCAAGTTGC AGCGATCTAT 26446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCAGAAG ATGAGAGGAA ACTTAAATAT CTGGATTTCG TTCAAGTTGC AGCGATCTAT 226 GTGATTGTTT GCTTCTCAAC TTTGTATGAA TACGGCAAAG AAAACTCCGG TCCGTTGAAA 26386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATTGTTT GCTTCTCAAC TTTGTATGAA TACGGCAAAG AAAACTCCGG TCCGTTGAAA 286 CCTGGTGTAC AGGCCGTAGA AGCCACTGTT AAAACTGTTA TCGGACCGGT TTATGAGAAG 26326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGTGTAC AGGCCGTAGA AGCCACTGTT AAAACTGTTA TCGGACCGGT TTATGAGAAG 346 TTCCATAACG TTCCTTTCAA TCTCCTCAAG TTCATCGACC TAAAGGTTCA CCTTCTTTCT 26266 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTCCATAACG TTCCTTTCAA TCTCCTCAAG TTCATCGACC TAAAG..... .......... 391 CCAAAATGAA TTTTACCCAT ACTGTCTACA CCATACTTAT TTTGCAGCTG AAAGTTTGCT 26206 .......... .......... .......... .......... .......... .......... 391 GGAATTGAGA AGGTATTTGT ATGGCATTCA GAAATTGTCT TCTCCAACTA ATCGAAATCC 26146 .......... .......... .......... .......... .......... .......... 391 TAGATCTAGC TCAATCTGGA AGAATGTGCA TGGACATGCA CATGATAATT CACTAACATA 26086 .......... .......... .......... .......... .......... .......... 391 GAAACGAATG TTGTAAACTT TGAACTCGAA TTTCAGTGGC AAGGATTTGA AAGTTTGAAT 26026 .......... .......... .......... .......... .......... .......... 391 CTATGCAGGT TGCAGACTTG ATGACAGAAG TTGAAAGCCA TGTGCCTTCT CTACTAAAGC 25966 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TGCAGACTTG ATGACAGAAG TTGAAAGCCA TGTGCCTTCT CTACTAAAGC 443 AGACATCATC TAAAGCTCTG TTAATAGCTC AGAAGGCTCC AGAATTAGCT CGAGATCTCG 25906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATCATC TAAAGCTCTG TTAATAGCTC AGAAGGCTCC AGAATTAGCT CGAGATCTCG 503 CCGGCGAGGT ACAGCACGAT GGCTTAGTGG ACACAGCGAG CAACGTAGCT AAAACACTCT 25846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGCGAGGT ACAGCACGAT GGCTTAGTGG ACACAGCGAG CAACGTAGCT AAAACACTCT 563 ACACAAAGTA CGAACCCACA GTCAAGGAGC TATA 25812 |||||||||| |||||||||| |||||||||| |||| ACACAAAGTA CGAACCCACA GTCAAGGAGC TATA 597 hqPGS_C09HBa0099P03.1-1-_SGN-E333037+ (27105 26940,26505 26281,26017 25812) ******************************************************************************** EST sequence 20 +strand 551 n (File: SGN-E312737+) 1 ACTTAGTTTT TCTCCATCTC TACCATGGCT GACGCAGCTG CAACGCCGCC TACTGATCCA 61 GCAAGCACGG CGCCACCTGC TACGACTGAT CCAGCAAGCA CGACGCCGCC TGCTAGTACT 121 GATCCAGCAA ACACGACGCC GCCTACTAGT ACTGATCCAG CTGATCCAGT AGCAGAAGAT 181 GAGAGGAAAC TTAAATATCT GGATTTCGTT CAAGTTGCAG CGATCTATGT GATTGTTTGC 241 TTCTCAACTT TGTATGAATA CGGCAAAGAA AACTCCGGTC CGTTGAAACC TGGTGTACAG 301 GCCGTAGAAG CCACTGTTAA AACTGTTATC GGACCGGTTT ATGAGAAGTT CCATAACGTT 361 CCTTTCAATC TCCTCAAGTT CATCGACCTA AAGGTTGCAG ACTTGATGAC AGAAGTTGAA 421 AGCCATGTGC CTTCTCTACT AAAGCAGACA TCATCTAAAG CTCTGTTAAT AGCTCAGAAG 481 GCTCCAGAAT TAGCTCGAGA TCTCGCCGGC GAGGTACAGC ACGATGGCTT AGTGGACACA 541 GCGAGCAACG T Predicted gene structure (within gDNA segment 27707 to 25250): Exon 1 27107 26940 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 26939 26506 ( 434 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 26505 26281 ( 225 n); cDNA 169 393 ( 225 n); score: 1.000 Intron 2 26280 26018 ( 263 n); Pd: 0.994 (s: 1.00), Pa: 0.958 (s: 1.00) Exon 3 26017 25860 ( 158 n); cDNA 394 551 ( 158 n); score: 1.000 MATCH C09HBa0099P03.1-1- SGN-E312737+ 1.000 551 1.000 C PGS_C09HBa0099P03.1-1-_SGN-E312737+ (27107 26940,26505 26281,26017 25860) Alignment (genomic DNA sequence = upper lines): ACTTAGTTTT TCTCCATCTC TACCATGGCT GACGCAGCTG CAACGCCGCC TACTGATCCA 27048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTAGTTTT TCTCCATCTC TACCATGGCT GACGCAGCTG CAACGCCGCC TACTGATCCA 60 GCAAGCACGG CGCCACCTGC TACGACTGAT CCAGCAAGCA CGACGCCGCC TGCTAGTACT 26988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCACGG CGCCACCTGC TACGACTGAT CCAGCAAGCA CGACGCCGCC TGCTAGTACT 120 GATCCAGCAA ACACGACGCC GCCTACTAGT ACTGATCCAG CTGATCCAGT AAGTATACAA 26928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GATCCAGCAA ACACGACGCC GCCTACTAGT ACTGATCCAG CTGATCCA.. .......... 168 TGTCTTCTAC GTTTATCATG ATATTACAGT TAAATCAATT TTAATTTTCA AACACACACC 26868 .......... .......... .......... .......... .......... .......... 168 GTTGTAGCGT GGTTGTAACT TCATATTCTG TTATTCAGGC TTCACATATT AGATCTAAGT 26808 .......... .......... .......... .......... .......... .......... 168 TGTTCAATTA CTCAATTTAA TTGCCAGAAT GAATTGTTAT CTTCTTATTT TGAGGTGTTA 26748 .......... .......... .......... .......... .......... .......... 168 AATTAGGAAT GAGTTGTTGT GCAATGCCTT CATGGTTGCC AATTTCATCT TCGCAATACA 26688 .......... .......... .......... .......... .......... .......... 168 TATGGTCACT CGACTGATAA AAAATATATC GAGAAAGAGT AGTTAGATTT GATTAAATGC 26628 .......... .......... .......... .......... .......... .......... 168 ATTGACAGGT AGAATACTAG TATAATTTGT TGAATTTAAT TCGAGATGTG TTTTCTCAAC 26568 .......... .......... .......... .......... .......... .......... 168 ATAGGTGAGA TTCAGAATTT TTGAGTTTTA AATCTGTACC TGATTTGTGT TTATAATTGA 26508 .......... .......... .......... .......... .......... .......... 168 AGGTAGCAGA AGATGAGAGG AAACTTAAAT ATCTGGATTT CGTTCAAGTT GCAGCGATCT 26448 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTAGCAGA AGATGAGAGG AAACTTAAAT ATCTGGATTT CGTTCAAGTT GCAGCGATCT 226 ATGTGATTGT TTGCTTCTCA ACTTTGTATG AATACGGCAA AGAAAACTCC GGTCCGTTGA 26388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGATTGT TTGCTTCTCA ACTTTGTATG AATACGGCAA AGAAAACTCC GGTCCGTTGA 286 AACCTGGTGT ACAGGCCGTA GAAGCCACTG TTAAAACTGT TATCGGACCG GTTTATGAGA 26328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTGGTGT ACAGGCCGTA GAAGCCACTG TTAAAACTGT TATCGGACCG GTTTATGAGA 346 AGTTCCATAA CGTTCCTTTC AATCTCCTCA AGTTCATCGA CCTAAAGGTT CACCTTCTTT 26268 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGTTCCATAA CGTTCCTTTC AATCTCCTCA AGTTCATCGA CCTAAAG... .......... 393 CTCCAAAATG AATTTTACCC ATACTGTCTA CACCATACTT ATTTTGCAGC TGAAAGTTTG 26208 .......... .......... .......... .......... .......... .......... 393 CTGGAATTGA GAAGGTATTT GTATGGCATT CAGAAATTGT CTTCTCCAAC TAATCGAAAT 26148 .......... .......... .......... .......... .......... .......... 393 CCTAGATCTA GCTCAATCTG GAAGAATGTG CATGGACATG CACATGATAA TTCACTAACA 26088 .......... .......... .......... .......... .......... .......... 393 TAGAAACGAA TGTTGTAAAC TTTGAACTCG AATTTCAGTG GCAAGGATTT GAAAGTTTGA 26028 .......... .......... .......... .......... .......... .......... 393 ATCTATGCAG GTTGCAGACT TGATGACAGA AGTTGAAAGC CATGTGCCTT CTCTACTAAA 25968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTTGCAGACT TGATGACAGA AGTTGAAAGC CATGTGCCTT CTCTACTAAA 443 GCAGACATCA TCTAAAGCTC TGTTAATAGC TCAGAAGGCT CCAGAATTAG CTCGAGATCT 25908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGACATCA TCTAAAGCTC TGTTAATAGC TCAGAAGGCT CCAGAATTAG CTCGAGATCT 503 CGCCGGCGAG GTACAGCACG ATGGCTTAGT GGACACAGCG AGCAACGT 25860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CGCCGGCGAG GTACAGCACG ATGGCTTAGT GGACACAGCG AGCAACGT 551 hqPGS_C09HBa0099P03.1-1-_SGN-E312737+ (27107 26940,26505 26281,26017 25860) ******************************************************************************** EST sequence 21 +strand 696 n (File: SGN-E376578+) 1 TTTTAGTTTG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTC CAAGTGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC AAAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA GAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATTTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTTTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCCTTTTG ATTTCTGCTT 541 TCTTTTGACA AGTAAAAGAA TTTCATTACA TTGGCTACAT TAGCACCAAG TACCTCTTCA 601 AAGTGGATAC AAAATACACC AGCTCCCTAT ACTTCCTGCA AGGAGCTAAA GAGTACAAAT 661 TAATTAGGGA TAATACATAT ATTGGACCCT AAACTT Predicted gene structure (within gDNA segment 30321 to 22889): Exon 1 28940 28823 ( 118 n); cDNA 71 187 ( 117 n); score: 0.907 Intron 1 28822 28645 ( 178 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0) Exon 2 28644 28607 ( 38 n); cDNA 188 225 ( 38 n); score: 0.658 Intron 2 28606 24881 (3726 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 3 24880 24864 ( 17 n); cDNA 226 242 ( 17 n); score: 0.647 Intron 3 24863 23650 (1214 n); Pd: 0.000 (s: 0), Pa: 0.676 (s: 0) Exon 4 23649 23639 ( 11 n); cDNA 243 253 ( 11 n); score: 0.636 MATCH C09HBa0099P03.1-1- SGN-E376578+ 0.907 184 0.264 C PGS_C09HBa0099P03.1-1-_SGN-E376578+ (28940 28823,28644 28607,24880 24864,23649 23639) Alignment (genomic DNA sequence = upper lines): ACATTTTGAT ACATTTGACA TAACTTTAAT TTAGAACCAC AAGATTAAAA AGTCTTCTTT 28881 |||||||| | |||||||||| |||||||||| |||||||||| || ||||||| ||||||| || ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC AAAATTAAAA AGTCTTC-TT 129 CTTTTCTTAA ACTTCATTCC AAGTCAAACT AGTTCATTCT TTTTTAAACG GAGAAAATAT 28821 |||||||||| ||| | |||| |||||||||| || ||||||| |||||||| | || | | CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG AAGGGAGT.. 187 GAAATAAGAG AATATACAAT ATACTATCTC ATTTTTAATA TTTATATTAG AACCTGACTA 28761 .......... .......... .......... .......... .......... .......... 187 ATCTAAATTC ACACAAAAAA GTAATGCATT GAAGAGTAAT TGTCTATTTT TTTTTTATAC 28701 .......... .......... .......... .......... .......... .......... 187 GTCTCTTTAA AAACCATAAA TAAAAATGTT ACTTTTACTA ATTTATACTT TAAAAAACTC 28641 ||| .......... .......... .......... .......... .......... ......ACTA 191 TTTTTGAATT TTACATAATT ATTTATATTT TCAAGTGAAT TAATTAAAAT AATTACCTTT 28581 |||| ||| | ||| | ||| | || |||| TTTTGGAAAT TTAGAGTTGG TTTTGTTTTC TCAA...... .......... .......... 225 TTAAAGAAAA AAATAAAAAA TAATTGAGGA CAACTATAAA TCTAGACAAT CTAAAATGAA 28521 .......... .......... .......... .......... .......... .......... 225 TCTTCGCATA AAAGTTAATA CCCGGGATCC GATCCTATTA AATTTAATTA TTTTTATTAA 28461 .......... .......... .......... .......... .......... .......... 225 TAAACAAAAT AAAAATAAAA ATAAACAGGT TATATACGTG ATTCTGTCGA GATTCTAGAA 28401 .......... .......... .......... .......... .......... .......... 225 CAGCTAGCTA ATCACGTGAG AATAACCTAC TTACTGAAAA AGTGACATGC ATTAAAGTGT 28341 .......... .......... .......... .......... .......... .......... 225 AACCGATAAT AATTAAAAGG GTTAAAGAAT TATACTCCTT TCATTTTATA AAAATGTTGG 28281 .......... .......... .......... .......... .......... .......... 225 TTTAAAAAAA TTAAAATAAA ATAATTTTTT TAGTTTTAAA TTAAAGTTGT ATCAAATGTA 28221 .......... .......... .......... .......... .......... .......... 225 TTAAAAAATT GATTGTATGG TGTTAAATAT ATCACGTGAA AAGTTGAATT TAAAGAATTG 28161 .......... .......... .......... .......... .......... .......... 225 TAAAAAAAGG GGACTTTTTT ATTTAAACAG ACCAAATAAA AGAGTAGGCT ATTCTTTATT 28101 .......... .......... .......... .......... .......... .......... 225 ATTAAACGAA GAGAGTAATA TTTTAAAGAG AAAACAACAT TTATATCAAA AAAGAAAAAC 28041 .......... .......... .......... .......... .......... .......... 225 TATTTATAAG TGGTTATCCT CCTTATTTTC ATATTAGTGG CGAAATCAAC AATTTCACAA 27981 .......... .......... .......... .......... .......... .......... 225 AGAGTGTCCA GATTAAGCAC AATAAGAACT CTTTTAAAAG TAGAACTAAT GAGATTCGAA 27921 .......... .......... .......... .......... .......... .......... 225 CATATAAGCA GTTACTCATT CCAAAGAGGC GAAATCACTA GGCAATAACA ACTTGTTAGG 27861 .......... .......... .......... .......... .......... .......... 225 TTAAGAGTGT TCAAAATATG TTATTTAATA ATTTTGTATG TCATTTTACT TGTATTTTTT 27801 .......... .......... .......... .......... .......... .......... 225 TTTCCCGACG AATCGTGTCA ATTTGGACAC TCTGACCATA ATGTGGCTAC CCCACTGTTC 27741 .......... .......... .......... .......... .......... .......... 225 TCATACCCCT ATTCTTAACT ACTAATGTGT CCTTAATATT CGATACCATC AAAGTATATA 27681 .......... .......... .......... .......... .......... .......... 225 TATAGATAGA CACACACTCG TGGTATCAAA GAGGAAGAAA AGTGCAGTGA TTCACTTATT 27621 .......... .......... .......... .......... .......... .......... 225 CTTTGATACC ATTAGAGTAA AATTTTAGAA AAAGAGACAG TGTTTCAGTG AAAACTCTAC 27561 .......... .......... .......... .......... .......... .......... 225 TCAGTTACTC TTTAATATCA TTCTGATGAC ATCAAAGAAG AAACTGCTCA ATTACTGATT 27501 .......... .......... .......... .......... .......... .......... 225 AATATCATCG AAGTGTATTT AAATCGTATC AAGAATTAAA AAAAAATTTA GTGATTGAAC 27441 .......... .......... .......... .......... .......... .......... 225 AAGAGGAAAG TAAGGTAAAT AATTTGGATT ATGTGTTCCA TCAAAGTAAA TAAATTGAGT 27381 .......... .......... .......... .......... .......... .......... 225 AAAGTCTTAA CTTAGGACAA TTTGTGTAAT TTTCCTTATT TAAAAATTAA CAAAAAAATA 27321 .......... .......... .......... .......... .......... .......... 225 TTATTAAATA ATTTCTTTCT ATTTATGGTC ATGAATACTA ATCACTTTAA TTAAGAATAT 27261 .......... .......... .......... .......... .......... .......... 225 TTATTCACTT TATTTTTGTG TTTTAAACAT TAATTGAAAA CCTGTAAAAT TTTCATCGAC 27201 .......... .......... .......... .......... .......... .......... 225 TTCTCCGCAC ACGATTATTA CGTGCCCCGT CCGCTATAAA AGAGGGCTTG CCAACTGCCT 27141 .......... .......... .......... .......... .......... .......... 225 GCCTTTTCGA AGCTCTCCTG TACAAACTCC ATTACTTAGT TTTTCTCCAT CTCTACCATG 27081 .......... .......... .......... .......... .......... .......... 225 GCTGACGCAG CTGCAACGCC GCCTACTGAT CCAGCAAGCA CGGCGCCACC TGCTACGACT 27021 .......... .......... .......... .......... .......... .......... 225 GATCCAGCAA GCACGACGCC GCCTGCTAGT ACTGATCCAG CAAACACGAC GCCGCCTACT 26961 .......... .......... .......... .......... .......... .......... 225 AGTACTGATC CAGCTGATCC AGTAAGTATA CAATGTCTTC TACGTTTATC ATGATATTAC 26901 .......... .......... .......... .......... .......... .......... 225 AGTTAAATCA ATTTTAATTT TCAAACACAC ACCGTTGTAG CGTGGTTGTA ACTTCATATT 26841 .......... .......... .......... .......... .......... .......... 225 CTGTTATTCA GGCTTCACAT ATTAGATCTA AGTTGTTCAA TTACTCAATT TAATTGCCAG 26781 .......... .......... .......... .......... .......... .......... 225 AATGAATTGT TATCTTCTTA TTTTGAGGTG TTAAATTAGG AATGAGTTGT TGTGCAATGC 26721 .......... .......... .......... .......... .......... .......... 225 CTTCATGGTT GCCAATTTCA TCTTCGCAAT ACATATGGTC ACTCGACTGA TAAAAAATAT 26661 .......... .......... .......... .......... .......... .......... 225 ATCGAGAAAG AGTAGTTAGA TTTGATTAAA TGCATTGACA GGTAGAATAC TAGTATAATT 26601 .......... .......... .......... .......... .......... .......... 225 TGTTGAATTT AATTCGAGAT GTGTTTTCTC AACATAGGTG AGATTCAGAA TTTTTGAGTT 26541 .......... .......... .......... .......... .......... .......... 225 TTAAATCTGT ACCTGATTTG TGTTTATAAT TGAAGGTAGC AGAAGATGAG AGGAAACTTA 26481 .......... .......... .......... .......... .......... .......... 225 AATATCTGGA TTTCGTTCAA GTTGCAGCGA TCTATGTGAT TGTTTGCTTC TCAACTTTGT 26421 .......... .......... .......... .......... .......... .......... 225 ATGAATACGG CAAAGAAAAC TCCGGTCCGT TGAAACCTGG TGTACAGGCC GTAGAAGCCA 26361 .......... .......... .......... .......... .......... .......... 225 CTGTTAAAAC TGTTATCGGA CCGGTTTATG AGAAGTTCCA TAACGTTCCT TTCAATCTCC 26301 .......... .......... .......... .......... .......... .......... 225 TCAAGTTCAT CGACCTAAAG GTTCACCTTC TTTCTCCAAA ATGAATTTTA CCCATACTGT 26241 .......... .......... .......... .......... .......... .......... 225 CTACACCATA CTTATTTTGC AGCTGAAAGT TTGCTGGAAT TGAGAAGGTA TTTGTATGGC 26181 .......... .......... .......... .......... .......... .......... 225 ATTCAGAAAT TGTCTTCTCC AACTAATCGA AATCCTAGAT CTAGCTCAAT CTGGAAGAAT 26121 .......... .......... .......... .......... .......... .......... 225 GTGCATGGAC ATGCACATGA TAATTCACTA ACATAGAAAC GAATGTTGTA AACTTTGAAC 26061 .......... .......... .......... .......... .......... .......... 225 TCGAATTTCA GTGGCAAGGA TTTGAAAGTT TGAATCTATG CAGGTTGCAG ACTTGATGAC 26001 .......... .......... .......... .......... .......... .......... 225 AGAAGTTGAA AGCCATGTGC CTTCTCTACT AAAGCAGACA TCATCTAAAG CTCTGTTAAT 25941 .......... .......... .......... .......... .......... .......... 225 AGCTCAGAAG GCTCCAGAAT TAGCTCGAGA TCTCGCCGGC GAGGTACAGC ACGATGGCTT 25881 .......... .......... .......... .......... .......... .......... 225 AGTGGACACA GCGAGCAACG TAGCTAAAAC ACTCTACACA AAGTACGAAC CCACAGTCAA 25821 .......... .......... .......... .......... .......... .......... 225 GGAGCTATAC ACAAAATACG AGCCAGTGAT CGAGAAAAAT GCGGTTTTGG CATGGAGATC 25761 .......... .......... .......... .......... .......... .......... 225 TCTGAATAAG CTTCCTTTGT TCCCTCAAGT GGCTCAGATT TTGGTGCCGA CGGCTGCTTA 25701 .......... .......... .......... .......... .......... .......... 225 TTGGAGTGAG AAATACAATC AAGCGGTGAC ATATGCGTCG GAGAACGGCT ATACGGCGGC 25641 .......... .......... .......... .......... .......... .......... 225 GCATTATTTA CCGATTATTC CCGTAGAGAG GATCGCGAAG GTGTTTGAAG GCGGCGCCAC 25581 .......... .......... .......... .......... .......... .......... 225 CGCTGAAAAC GAGCAGTCCG TTCCCTTGAC CGACGGCACT GTTGCTCCGG CGCAATGACC 25521 .......... .......... .......... .......... .......... .......... 225 ATTTTACATT ACTGTACTGG GGGGGGGGGG GGGGGGGGGC TTAATGGGCC GTCAGGTTAA 25461 .......... .......... .......... .......... .......... .......... 225 TAACTTGGTT TATGTTTGTC GGTAGTAATT GTTCATCTTT ATATCGTGAG CCACTTCTTA 25401 .......... .......... .......... .......... .......... .......... 225 AGTTCCTTAA TATATTGTAT TTAGTAATTA TCCTAAATCA CCAAATTTAA ATTCTTGAAC 25341 .......... .......... .......... .......... .......... .......... 225 ATATCATATT GTATCAACTT TTAATCAAGC AGGTGAAACA AAATACAAGA ATAAAGAGGT 25281 .......... .......... .......... .......... .......... .......... 225 TTTAGGGAGT ATCGATGGTA AAGAACATCA AAAGAAATGA TTTGATTTTG TAACTTTTCA 25221 .......... .......... .......... .......... .......... .......... 225 CAAAGTTGAA TAAGACGTGC GTTTATTAGA TTTCGATCAG TCTAGGAAAA TATTTGTACA 25161 .......... .......... .......... .......... .......... .......... 225 TTGTCCCGAG ATCATTTCCA TCATATTTTT AAGCCTCACG TGTTTAAATC GAAGAAATTT 25101 .......... .......... .......... .......... .......... .......... 225 TCACATATAG CCACTTAAAT ATAATTAATT ACTCTCCATA GATATAGTTT GATAATTATA 25041 .......... .......... .......... .......... .......... .......... 225 ATTTGTAGCT ACATGTTATA TGAAGAAAAG AGATGAGCGA GACTAGGAGA GTGACGAGAG 24981 .......... .......... .......... .......... .......... .......... 225 AGGCGAGAGA GGGGAGAAAA GAGTGGGAGA AAGGTGAATT ATATATGTAT ATTGGTTAGA 24921 .......... .......... .......... .......... .......... .......... 225 TATTTGTATA TTATACCTAT GTATTTGTAT ATATGGCAAG AGAGATTGGG AGAGAGAGGA 24861 ||||| | | | || | .......... .......... .......... .......... TGAGATGGTG AAAGTGT... 242 GAGAGGAGAT TGGAAAAGGG AGGAGAGAGG CGAGCGAGAC TAGGAAGAGA GGTGACTGTA 24801 .......... .......... .......... .......... .......... .......... 242 TACATATGTA GGTTAAATAA TTGTATATTA TACATATGTA TTTGTATATT CTGGCGAATT 24741 .......... .......... .......... .......... .......... .......... 242 ATACATATAC AAACGTGACT AATTATACAA ATTCGAAGTC GGCCCATGTA ATTAATATAC 24681 .......... .......... .......... .......... .......... .......... 242 AATGTTTGTC GCGAAAGATA ATAATAGCAA ACTACAACTA TGATATGTAA TCAAATAGTA 24621 .......... .......... .......... .......... .......... .......... 242 TAAATTTATT TTATTACGTA ATTTTCTCTA ACCACCACCC TATTTTATTT TTATCTGACA 24561 .......... .......... .......... .......... .......... .......... 242 CGAAGAAGTA GCAACAATAT ACATTTTTTT AAATGACTCA AGATCCATCA TGATCGTTAG 24501 .......... .......... .......... .......... .......... .......... 242 TTGTTTCTCC ATATTTGCTT ACAATATGCA AATAGCTAAT GATATCTACT CGTACTAAAA 24441 .......... .......... .......... .......... .......... .......... 242 AATGATGAAT TGCTTCTATG CATATCTAGA AAATTAAAAT ATGAATGATT AATTGGTAAA 24381 .......... .......... .......... .......... .......... .......... 242 AATGGTGAAG TAACATTTTA AAATAAAATG ATAAGGTATA ATTTTTACAT TGATAATATC 24321 .......... .......... .......... .......... .......... .......... 242 TATCACTTCT ACTTGAAACA TTTTTGCAAT AGTTCGTACA TAATTCTAAA TGCTTTCTAA 24261 .......... .......... .......... .......... .......... .......... 242 AGTTCATGCT TTACAAAAGA GTGAAATGAC AGATTCAACC CAACCCCCCC CTCCCCCCCC 24201 .......... .......... .......... .......... .......... .......... 242 CCCTCTTTAC TTCCTTGTCC TCTATGTAAC ACAGCATAAA CACCTTTTGA GATAAGATTG 24141 .......... .......... .......... .......... .......... .......... 242 GCACCAAAAA TGAAAATCAA CAAACAACTC AAACAAACAT TTACTCAACA ACATATTCAA 24081 .......... .......... .......... .......... .......... .......... 242 TGTAATCTCA AATAGGATAT GAGAATAGTT ACGTACGCAG ACCTTATCTC TATCTTGTGA 24021 .......... .......... .......... .......... .......... .......... 242 GAGTAGAGAG TTGTTTCTCG ACTCGGGTAA AACAATCATT TTCTCCAAAA AGAGATCAAA 23961 .......... .......... .......... .......... .......... .......... 242 AAATGACTTC ACAAACTCGA TAAGAAAAAT TTTCAAGCAA ATACTTCTAC TACTATGAGA 23901 .......... .......... .......... .......... .......... .......... 242 TAGTACATCT ATTATGTCCT TGCCCAAGCA TAAGCCATTA GTGACCTTAA CCAAATTCTA 23841 .......... .......... .......... .......... .......... .......... 242 CTCCAATATT GAACCTTGTA ATATCACCAC TCAAGAAGTA TCAGTCGGTT CAATTAATAT 23781 .......... .......... .......... .......... .......... .......... 242 CATGTTATAA AACAATAAAT ATCAACAATC AAGGAAACTC TGCCTTGTGG ACCCTTGTTT 23721 .......... .......... .......... .......... .......... .......... 242 GTAAGATGTA TGTTGTTGAA TAGAAGTACA TTAAATGAGA AAAAGAATCA CAGTTGTTCA 23661 .......... .......... .......... .......... .......... .......... 242 ATACATTGTA GGAAGCATAT AA 23639 | |||| || .......... .ACACCATAG AA 253 hqPGS_C09HBa0099P03.1-1-_SGN-E376578+ (28940 28823) ******************************************************************************** EST sequence 22 +strand 429 n (File: SGN-E393272+) 1 TTTTTAGTTT GTTTAAAAAT GAATGACTCC TTTCATTTTG TTTTAACTTT CCAAGTGACA 61 TGTTTAAGAC GACATTTTGG TACATTTGAC ATAACTTTAA TTTAGAACCA CAAAATTAAA 121 AAGTCTTCTT CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG 181 AAGGGAGTAC TATTTTGGAA ATTTAGAGTT GGTTTTGTTT TCTCAATGAG ATGGTGAAAG 241 TGTACACCAT AGAATTATGA GATCTTTTTT TCTTGTCCAA CTTGAAATGG TTGCCGAATC 301 ATTATCTTGG TATTATGCTG GGGAAGCTTT TCAGAATTTT CACCTTAGTG TATTCTAATA 361 TTTCTAATAT ATCTAGTTGT ACGAAAGATC TTGCATCCTA TAGTGATGCT TACCTTTTTT 421 ACAATATTC Predicted gene structure (within gDNA segment 30331 to 23769): Exon 1 28940 28823 ( 118 n); cDNA 72 188 ( 117 n); score: 0.907 Intron 1 28822 28645 ( 178 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0) Exon 2 28644 28607 ( 38 n); cDNA 189 226 ( 38 n); score: 0.658 Intron 2 28606 24881 (3726 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 3 24880 24867 ( 14 n); cDNA 227 240 ( 14 n); score: 0.714 MATCH C09HBa0099P03.1-1- SGN-E393272+ 0.907 170 0.396 C PGS_C09HBa0099P03.1-1-_SGN-E393272+ (28940 28823,28644 28607,24880 24867) Alignment (genomic DNA sequence = upper lines): ACATTTTGAT ACATTTGACA TAACTTTAAT TTAGAACCAC AAGATTAAAA AGTCTTCTTT 28881 |||||||| | |||||||||| |||||||||| |||||||||| || ||||||| ||||||| || ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC AAAATTAAAA AGTCTTC-TT 130 CTTTTCTTAA ACTTCATTCC AAGTCAAACT AGTTCATTCT TTTTTAAACG GAGAAAATAT 28821 |||||||||| ||| | |||| |||||||||| || ||||||| |||||||| | || | | CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG AAGGGAGT.. 188 GAAATAAGAG AATATACAAT ATACTATCTC ATTTTTAATA TTTATATTAG AACCTGACTA 28761 .......... .......... .......... .......... .......... .......... 188 ATCTAAATTC ACACAAAAAA GTAATGCATT GAAGAGTAAT TGTCTATTTT TTTTTTATAC 28701 .......... .......... .......... .......... .......... .......... 188 GTCTCTTTAA AAACCATAAA TAAAAATGTT ACTTTTACTA ATTTATACTT TAAAAAACTC 28641 ||| .......... .......... .......... .......... .......... ......ACTA 192 TTTTTGAATT TTACATAATT ATTTATATTT TCAAGTGAAT TAATTAAAAT AATTACCTTT 28581 |||| ||| | ||| | ||| | || |||| TTTTGGAAAT TTAGAGTTGG TTTTGTTTTC TCAA...... .......... .......... 226 TTAAAGAAAA AAATAAAAAA TAATTGAGGA CAACTATAAA TCTAGACAAT CTAAAATGAA 28521 .......... .......... .......... .......... .......... .......... 226 TCTTCGCATA AAAGTTAATA CCCGGGATCC GATCCTATTA AATTTAATTA TTTTTATTAA 28461 .......... .......... .......... .......... .......... .......... 226 TAAACAAAAT AAAAATAAAA ATAAACAGGT TATATACGTG ATTCTGTCGA GATTCTAGAA 28401 .......... .......... .......... .......... .......... .......... 226 CAGCTAGCTA ATCACGTGAG AATAACCTAC TTACTGAAAA AGTGACATGC ATTAAAGTGT 28341 .......... .......... .......... .......... .......... .......... 226 AACCGATAAT AATTAAAAGG GTTAAAGAAT TATACTCCTT TCATTTTATA AAAATGTTGG 28281 .......... .......... .......... .......... .......... .......... 226 TTTAAAAAAA TTAAAATAAA ATAATTTTTT TAGTTTTAAA TTAAAGTTGT ATCAAATGTA 28221 .......... .......... .......... .......... .......... .......... 226 TTAAAAAATT GATTGTATGG TGTTAAATAT ATCACGTGAA AAGTTGAATT TAAAGAATTG 28161 .......... .......... .......... .......... .......... .......... 226 TAAAAAAAGG GGACTTTTTT ATTTAAACAG ACCAAATAAA AGAGTAGGCT ATTCTTTATT 28101 .......... .......... .......... .......... .......... .......... 226 ATTAAACGAA GAGAGTAATA TTTTAAAGAG AAAACAACAT TTATATCAAA AAAGAAAAAC 28041 .......... .......... .......... .......... .......... .......... 226 TATTTATAAG TGGTTATCCT CCTTATTTTC ATATTAGTGG CGAAATCAAC AATTTCACAA 27981 .......... .......... .......... .......... .......... .......... 226 AGAGTGTCCA GATTAAGCAC AATAAGAACT CTTTTAAAAG TAGAACTAAT GAGATTCGAA 27921 .......... .......... .......... .......... .......... .......... 226 CATATAAGCA GTTACTCATT CCAAAGAGGC GAAATCACTA GGCAATAACA ACTTGTTAGG 27861 .......... .......... .......... .......... .......... .......... 226 TTAAGAGTGT TCAAAATATG TTATTTAATA ATTTTGTATG TCATTTTACT TGTATTTTTT 27801 .......... .......... .......... .......... .......... .......... 226 TTTCCCGACG AATCGTGTCA ATTTGGACAC TCTGACCATA ATGTGGCTAC CCCACTGTTC 27741 .......... .......... .......... .......... .......... .......... 226 TCATACCCCT ATTCTTAACT ACTAATGTGT CCTTAATATT CGATACCATC AAAGTATATA 27681 .......... .......... .......... .......... .......... .......... 226 TATAGATAGA CACACACTCG TGGTATCAAA GAGGAAGAAA AGTGCAGTGA TTCACTTATT 27621 .......... .......... .......... .......... .......... .......... 226 CTTTGATACC ATTAGAGTAA AATTTTAGAA AAAGAGACAG TGTTTCAGTG AAAACTCTAC 27561 .......... .......... .......... .......... .......... .......... 226 TCAGTTACTC TTTAATATCA TTCTGATGAC ATCAAAGAAG AAACTGCTCA ATTACTGATT 27501 .......... .......... .......... .......... .......... .......... 226 AATATCATCG AAGTGTATTT AAATCGTATC AAGAATTAAA AAAAAATTTA GTGATTGAAC 27441 .......... .......... .......... .......... .......... .......... 226 AAGAGGAAAG TAAGGTAAAT AATTTGGATT ATGTGTTCCA TCAAAGTAAA TAAATTGAGT 27381 .......... .......... .......... .......... .......... .......... 226 AAAGTCTTAA CTTAGGACAA TTTGTGTAAT TTTCCTTATT TAAAAATTAA CAAAAAAATA 27321 .......... .......... .......... .......... .......... .......... 226 TTATTAAATA ATTTCTTTCT ATTTATGGTC ATGAATACTA ATCACTTTAA TTAAGAATAT 27261 .......... .......... .......... .......... .......... .......... 226 TTATTCACTT TATTTTTGTG TTTTAAACAT TAATTGAAAA CCTGTAAAAT TTTCATCGAC 27201 .......... .......... .......... .......... .......... .......... 226 TTCTCCGCAC ACGATTATTA CGTGCCCCGT CCGCTATAAA AGAGGGCTTG CCAACTGCCT 27141 .......... .......... .......... .......... .......... .......... 226 GCCTTTTCGA AGCTCTCCTG TACAAACTCC ATTACTTAGT TTTTCTCCAT CTCTACCATG 27081 .......... .......... .......... .......... .......... .......... 226 GCTGACGCAG CTGCAACGCC GCCTACTGAT CCAGCAAGCA CGGCGCCACC TGCTACGACT 27021 .......... .......... .......... .......... .......... .......... 226 GATCCAGCAA GCACGACGCC GCCTGCTAGT ACTGATCCAG CAAACACGAC GCCGCCTACT 26961 .......... .......... .......... .......... .......... .......... 226 AGTACTGATC CAGCTGATCC AGTAAGTATA CAATGTCTTC TACGTTTATC ATGATATTAC 26901 .......... .......... .......... .......... .......... .......... 226 AGTTAAATCA ATTTTAATTT TCAAACACAC ACCGTTGTAG CGTGGTTGTA ACTTCATATT 26841 .......... .......... .......... .......... .......... .......... 226 CTGTTATTCA GGCTTCACAT ATTAGATCTA AGTTGTTCAA TTACTCAATT TAATTGCCAG 26781 .......... .......... .......... .......... .......... .......... 226 AATGAATTGT TATCTTCTTA TTTTGAGGTG TTAAATTAGG AATGAGTTGT TGTGCAATGC 26721 .......... .......... .......... .......... .......... .......... 226 CTTCATGGTT GCCAATTTCA TCTTCGCAAT ACATATGGTC ACTCGACTGA TAAAAAATAT 26661 .......... .......... .......... .......... .......... .......... 226 ATCGAGAAAG AGTAGTTAGA TTTGATTAAA TGCATTGACA GGTAGAATAC TAGTATAATT 26601 .......... .......... .......... .......... .......... .......... 226 TGTTGAATTT AATTCGAGAT GTGTTTTCTC AACATAGGTG AGATTCAGAA TTTTTGAGTT 26541 .......... .......... .......... .......... .......... .......... 226 TTAAATCTGT ACCTGATTTG TGTTTATAAT TGAAGGTAGC AGAAGATGAG AGGAAACTTA 26481 .......... .......... .......... .......... .......... .......... 226 AATATCTGGA TTTCGTTCAA GTTGCAGCGA TCTATGTGAT TGTTTGCTTC TCAACTTTGT 26421 .......... .......... .......... .......... .......... .......... 226 ATGAATACGG CAAAGAAAAC TCCGGTCCGT TGAAACCTGG TGTACAGGCC GTAGAAGCCA 26361 .......... .......... .......... .......... .......... .......... 226 CTGTTAAAAC TGTTATCGGA CCGGTTTATG AGAAGTTCCA TAACGTTCCT TTCAATCTCC 26301 .......... .......... .......... .......... .......... .......... 226 TCAAGTTCAT CGACCTAAAG GTTCACCTTC TTTCTCCAAA ATGAATTTTA CCCATACTGT 26241 .......... .......... .......... .......... .......... .......... 226 CTACACCATA CTTATTTTGC AGCTGAAAGT TTGCTGGAAT TGAGAAGGTA TTTGTATGGC 26181 .......... .......... .......... .......... .......... .......... 226 ATTCAGAAAT TGTCTTCTCC AACTAATCGA AATCCTAGAT CTAGCTCAAT CTGGAAGAAT 26121 .......... .......... .......... .......... .......... .......... 226 GTGCATGGAC ATGCACATGA TAATTCACTA ACATAGAAAC GAATGTTGTA AACTTTGAAC 26061 .......... .......... .......... .......... .......... .......... 226 TCGAATTTCA GTGGCAAGGA TTTGAAAGTT TGAATCTATG CAGGTTGCAG ACTTGATGAC 26001 .......... .......... .......... .......... .......... .......... 226 AGAAGTTGAA AGCCATGTGC CTTCTCTACT AAAGCAGACA TCATCTAAAG CTCTGTTAAT 25941 .......... .......... .......... .......... .......... .......... 226 AGCTCAGAAG GCTCCAGAAT TAGCTCGAGA TCTCGCCGGC GAGGTACAGC ACGATGGCTT 25881 .......... .......... .......... .......... .......... .......... 226 AGTGGACACA GCGAGCAACG TAGCTAAAAC ACTCTACACA AAGTACGAAC CCACAGTCAA 25821 .......... .......... .......... .......... .......... .......... 226 GGAGCTATAC ACAAAATACG AGCCAGTGAT CGAGAAAAAT GCGGTTTTGG CATGGAGATC 25761 .......... .......... .......... .......... .......... .......... 226 TCTGAATAAG CTTCCTTTGT TCCCTCAAGT GGCTCAGATT TTGGTGCCGA CGGCTGCTTA 25701 .......... .......... .......... .......... .......... .......... 226 TTGGAGTGAG AAATACAATC AAGCGGTGAC ATATGCGTCG GAGAACGGCT ATACGGCGGC 25641 .......... .......... .......... .......... .......... .......... 226 GCATTATTTA CCGATTATTC CCGTAGAGAG GATCGCGAAG GTGTTTGAAG GCGGCGCCAC 25581 .......... .......... .......... .......... .......... .......... 226 CGCTGAAAAC GAGCAGTCCG TTCCCTTGAC CGACGGCACT GTTGCTCCGG CGCAATGACC 25521 .......... .......... .......... .......... .......... .......... 226 ATTTTACATT ACTGTACTGG GGGGGGGGGG GGGGGGGGGC TTAATGGGCC GTCAGGTTAA 25461 .......... .......... .......... .......... .......... .......... 226 TAACTTGGTT TATGTTTGTC GGTAGTAATT GTTCATCTTT ATATCGTGAG CCACTTCTTA 25401 .......... .......... .......... .......... .......... .......... 226 AGTTCCTTAA TATATTGTAT TTAGTAATTA TCCTAAATCA CCAAATTTAA ATTCTTGAAC 25341 .......... .......... .......... .......... .......... .......... 226 ATATCATATT GTATCAACTT TTAATCAAGC AGGTGAAACA AAATACAAGA ATAAAGAGGT 25281 .......... .......... .......... .......... .......... .......... 226 TTTAGGGAGT ATCGATGGTA AAGAACATCA AAAGAAATGA TTTGATTTTG TAACTTTTCA 25221 .......... .......... .......... .......... .......... .......... 226 CAAAGTTGAA TAAGACGTGC GTTTATTAGA TTTCGATCAG TCTAGGAAAA TATTTGTACA 25161 .......... .......... .......... .......... .......... .......... 226 TTGTCCCGAG ATCATTTCCA TCATATTTTT AAGCCTCACG TGTTTAAATC GAAGAAATTT 25101 .......... .......... .......... .......... .......... .......... 226 TCACATATAG CCACTTAAAT ATAATTAATT ACTCTCCATA GATATAGTTT GATAATTATA 25041 .......... .......... .......... .......... .......... .......... 226 ATTTGTAGCT ACATGTTATA TGAAGAAAAG AGATGAGCGA GACTAGGAGA GTGACGAGAG 24981 .......... .......... .......... .......... .......... .......... 226 AGGCGAGAGA GGGGAGAAAA GAGTGGGAGA AAGGTGAATT ATATATGTAT ATTGGTTAGA 24921 .......... .......... .......... .......... .......... .......... 226 TATTTGTATA TTATACCTAT GTATTTGTAT ATATGGCAAG AGAGATTGGG AGAG 24867 ||||| | | | || .......... .......... .......... .......... TGAGATGGTG AAAG 240 hqPGS_C09HBa0099P03.1-1-_SGN-E393272+ (28940 28823) ******************************************************************************** EST sequence 25 +strand 525 n (File: SGN-E210228+) 1 TTTTAGTTCG TTTAAAAAAG AATGACTCCT TTCATTTTGT TTTAACTTTG CAAGGGACAT 61 GTTTAAGACG ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC CCAATTAAAA 121 AGTCTTCTTC TTTTCTTAAA CTCCGTTCCA AGTCAAACTA GGTCATTCTT TTTTAAATGA 181 AGGGAGTACT ATTTTGGAAA TTTAGAGTTG GTTTTGTTTT CTCAATGAGA TGGTGAAAGT 241 GTACACCATA CAATTATGAG ATCTTTTTTT CTTGTCCAAC TTGAAATGGT TGCCGAATCA 301 TTATCTTGGT AATATGCTGG GGAAGCTTTT CAGAATCTTC ACCTTAGTGT ATTCTAATAT 361 TTCTAATATA TCTAGTTGTA CGAAAGATCT TGCATCATAT AGTGATGCTT ACCTTTTTTA 421 TAATATTCAC ATAATTATCA AATCTCTGGA TTTGTAACTT GCAGCATGTT GCCTTCACAT 481 GTGTGTATCA TATATACTTA CTTTCTTATC AGAACTTCTA GAGCC Predicted gene structure (within gDNA segment 30321 to 23999): Exon 1 28940 28823 ( 118 n); cDNA 71 187 ( 117 n); score: 0.890 Intron 1 28822 28645 ( 178 n); Pd: 0.000 (s: 0.84), Pa: 0.000 (s: 0) Exon 2 28644 28607 ( 38 n); cDNA 188 225 ( 38 n); score: 0.658 Intron 2 28606 24881 (3726 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 3 24880 24867 ( 14 n); cDNA 226 239 ( 14 n); score: 0.714 MATCH C09HBa0099P03.1-1- SGN-E210228+ 0.890 170 0.324 C PGS_C09HBa0099P03.1-1-_SGN-E210228+ (28940 28823,28644 28607,24880 24867) Alignment (genomic DNA sequence = upper lines): ACATTTTGAT ACATTTGACA TAACTTTAAT TTAGAACCAC AAGATTAAAA AGTCTTCTTT 28881 |||||||| | |||||||||| |||||||||| |||||||||| ||||||| ||||||| || ACATTTTGGT ACATTTGACA TAACTTTAAT TTAGAACCAC CCAATTAAAA AGTCTTC-TT 129 CTTTTCTTAA ACTTCATTCC AAGTCAAACT AGTTCATTCT TTTTTAAACG GAGAAAATAT 28821 |||||||||| ||| | |||| |||||||||| || ||||||| |||||||| | || | | CTTTTCTTAA ACTCCGTTCC AAGTCAAACT AGGTCATTCT TTTTTAAATG AAGGGAGT.. 187 GAAATAAGAG AATATACAAT ATACTATCTC ATTTTTAATA TTTATATTAG AACCTGACTA 28761 .......... .......... .......... .......... .......... .......... 187 ATCTAAATTC ACACAAAAAA GTAATGCATT GAAGAGTAAT TGTCTATTTT TTTTTTATAC 28701 .......... .......... .......... .......... .......... .......... 187 GTCTCTTTAA AAACCATAAA TAAAAATGTT ACTTTTACTA ATTTATACTT TAAAAAACTC 28641 ||| .......... .......... .......... .......... .......... ......ACTA 191 TTTTTGAATT TTACATAATT ATTTATATTT TCAAGTGAAT TAATTAAAAT AATTACCTTT 28581 |||| ||| | ||| | ||| | || |||| TTTTGGAAAT TTAGAGTTGG TTTTGTTTTC TCAA...... .......... .......... 225 TTAAAGAAAA AAATAAAAAA TAATTGAGGA CAACTATAAA TCTAGACAAT CTAAAATGAA 28521 .......... .......... .......... .......... .......... .......... 225 TCTTCGCATA AAAGTTAATA CCCGGGATCC GATCCTATTA AATTTAATTA TTTTTATTAA 28461 .......... .......... .......... .......... .......... .......... 225 TAAACAAAAT AAAAATAAAA ATAAACAGGT TATATACGTG ATTCTGTCGA GATTCTAGAA 28401 .......... .......... .......... .......... .......... .......... 225 CAGCTAGCTA ATCACGTGAG AATAACCTAC TTACTGAAAA AGTGACATGC ATTAAAGTGT 28341 .......... .......... .......... .......... .......... .......... 225 AACCGATAAT AATTAAAAGG GTTAAAGAAT TATACTCCTT TCATTTTATA AAAATGTTGG 28281 .......... .......... .......... .......... .......... .......... 225 TTTAAAAAAA TTAAAATAAA ATAATTTTTT TAGTTTTAAA TTAAAGTTGT ATCAAATGTA 28221 .......... .......... .......... .......... .......... .......... 225 TTAAAAAATT GATTGTATGG TGTTAAATAT ATCACGTGAA AAGTTGAATT TAAAGAATTG 28161 .......... .......... .......... .......... .......... .......... 225 TAAAAAAAGG GGACTTTTTT ATTTAAACAG ACCAAATAAA AGAGTAGGCT ATTCTTTATT 28101 .......... .......... .......... .......... .......... .......... 225 ATTAAACGAA GAGAGTAATA TTTTAAAGAG AAAACAACAT TTATATCAAA AAAGAAAAAC 28041 .......... .......... .......... .......... .......... .......... 225 TATTTATAAG TGGTTATCCT CCTTATTTTC ATATTAGTGG CGAAATCAAC AATTTCACAA 27981 .......... .......... .......... .......... .......... .......... 225 AGAGTGTCCA GATTAAGCAC AATAAGAACT CTTTTAAAAG TAGAACTAAT GAGATTCGAA 27921 .......... .......... .......... .......... .......... .......... 225 CATATAAGCA GTTACTCATT CCAAAGAGGC GAAATCACTA GGCAATAACA ACTTGTTAGG 27861 .......... .......... .......... .......... .......... .......... 225 TTAAGAGTGT TCAAAATATG TTATTTAATA ATTTTGTATG TCATTTTACT TGTATTTTTT 27801 .......... .......... .......... .......... .......... .......... 225 TTTCCCGACG AATCGTGTCA ATTTGGACAC TCTGACCATA ATGTGGCTAC CCCACTGTTC 27741 .......... .......... .......... .......... .......... .......... 225 TCATACCCCT ATTCTTAACT ACTAATGTGT CCTTAATATT CGATACCATC AAAGTATATA 27681 .......... .......... .......... .......... .......... .......... 225 TATAGATAGA CACACACTCG TGGTATCAAA GAGGAAGAAA AGTGCAGTGA TTCACTTATT 27621 .......... .......... .......... .......... .......... .......... 225 CTTTGATACC ATTAGAGTAA AATTTTAGAA AAAGAGACAG TGTTTCAGTG AAAACTCTAC 27561 .......... .......... .......... .......... .......... .......... 225 TCAGTTACTC TTTAATATCA TTCTGATGAC ATCAAAGAAG AAACTGCTCA ATTACTGATT 27501 .......... .......... .......... .......... .......... .......... 225 AATATCATCG AAGTGTATTT AAATCGTATC AAGAATTAAA AAAAAATTTA GTGATTGAAC 27441 .......... .......... .......... .......... .......... .......... 225 AAGAGGAAAG TAAGGTAAAT AATTTGGATT ATGTGTTCCA TCAAAGTAAA TAAATTGAGT 27381 .......... .......... .......... .......... .......... .......... 225 AAAGTCTTAA CTTAGGACAA TTTGTGTAAT TTTCCTTATT TAAAAATTAA CAAAAAAATA 27321 .......... .......... .......... .......... .......... .......... 225 TTATTAAATA ATTTCTTTCT ATTTATGGTC ATGAATACTA ATCACTTTAA TTAAGAATAT 27261 .......... .......... .......... .......... .......... .......... 225 TTATTCACTT TATTTTTGTG TTTTAAACAT TAATTGAAAA CCTGTAAAAT TTTCATCGAC 27201 .......... .......... .......... .......... .......... .......... 225 TTCTCCGCAC ACGATTATTA CGTGCCCCGT CCGCTATAAA AGAGGGCTTG CCAACTGCCT 27141 .......... .......... .......... .......... .......... .......... 225 GCCTTTTCGA AGCTCTCCTG TACAAACTCC ATTACTTAGT TTTTCTCCAT CTCTACCATG 27081 .......... .......... .......... .......... .......... .......... 225 GCTGACGCAG CTGCAACGCC GCCTACTGAT CCAGCAAGCA CGGCGCCACC TGCTACGACT 27021 .......... .......... .......... .......... .......... .......... 225 GATCCAGCAA GCACGACGCC GCCTGCTAGT ACTGATCCAG CAAACACGAC GCCGCCTACT 26961 .......... .......... .......... .......... .......... .......... 225 AGTACTGATC CAGCTGATCC AGTAAGTATA CAATGTCTTC TACGTTTATC ATGATATTAC 26901 .......... .......... .......... .......... .......... .......... 225 AGTTAAATCA ATTTTAATTT TCAAACACAC ACCGTTGTAG CGTGGTTGTA ACTTCATATT 26841 .......... .......... .......... .......... .......... .......... 225 CTGTTATTCA GGCTTCACAT ATTAGATCTA AGTTGTTCAA TTACTCAATT TAATTGCCAG 26781 .......... .......... .......... .......... .......... .......... 225 AATGAATTGT TATCTTCTTA TTTTGAGGTG TTAAATTAGG AATGAGTTGT TGTGCAATGC 26721 .......... .......... .......... .......... .......... .......... 225 CTTCATGGTT GCCAATTTCA TCTTCGCAAT ACATATGGTC ACTCGACTGA TAAAAAATAT 26661 .......... .......... .......... .......... .......... .......... 225 ATCGAGAAAG AGTAGTTAGA TTTGATTAAA TGCATTGACA GGTAGAATAC TAGTATAATT 26601 .......... .......... .......... .......... .......... .......... 225 TGTTGAATTT AATTCGAGAT GTGTTTTCTC AACATAGGTG AGATTCAGAA TTTTTGAGTT 26541 .......... .......... .......... .......... .......... .......... 225 TTAAATCTGT ACCTGATTTG TGTTTATAAT TGAAGGTAGC AGAAGATGAG AGGAAACTTA 26481 .......... .......... .......... .......... .......... .......... 225 AATATCTGGA TTTCGTTCAA GTTGCAGCGA TCTATGTGAT TGTTTGCTTC TCAACTTTGT 26421 .......... .......... .......... .......... .......... .......... 225 ATGAATACGG CAAAGAAAAC TCCGGTCCGT TGAAACCTGG TGTACAGGCC GTAGAAGCCA 26361 .......... .......... .......... .......... .......... .......... 225 CTGTTAAAAC TGTTATCGGA CCGGTTTATG AGAAGTTCCA TAACGTTCCT TTCAATCTCC 26301 .......... .......... .......... .......... .......... .......... 225 TCAAGTTCAT CGACCTAAAG GTTCACCTTC TTTCTCCAAA ATGAATTTTA CCCATACTGT 26241 .......... .......... .......... .......... .......... .......... 225 CTACACCATA CTTATTTTGC AGCTGAAAGT TTGCTGGAAT TGAGAAGGTA TTTGTATGGC 26181 .......... .......... .......... .......... .......... .......... 225 ATTCAGAAAT TGTCTTCTCC AACTAATCGA AATCCTAGAT CTAGCTCAAT CTGGAAGAAT 26121 .......... .......... .......... .......... .......... .......... 225 GTGCATGGAC ATGCACATGA TAATTCACTA ACATAGAAAC GAATGTTGTA AACTTTGAAC 26061 .......... .......... .......... .......... .......... .......... 225 TCGAATTTCA GTGGCAAGGA TTTGAAAGTT TGAATCTATG CAGGTTGCAG ACTTGATGAC 26001 .......... .......... .......... .......... .......... .......... 225 AGAAGTTGAA AGCCATGTGC CTTCTCTACT AAAGCAGACA TCATCTAAAG CTCTGTTAAT 25941 .......... .......... .......... .......... .......... .......... 225 AGCTCAGAAG GCTCCAGAAT TAGCTCGAGA TCTCGCCGGC GAGGTACAGC ACGATGGCTT 25881 .......... .......... .......... .......... .......... .......... 225 AGTGGACACA GCGAGCAACG TAGCTAAAAC ACTCTACACA AAGTACGAAC CCACAGTCAA 25821 .......... .......... .......... .......... .......... .......... 225 GGAGCTATAC ACAAAATACG AGCCAGTGAT CGAGAAAAAT GCGGTTTTGG CATGGAGATC 25761 .......... .......... .......... .......... .......... .......... 225 TCTGAATAAG CTTCCTTTGT TCCCTCAAGT GGCTCAGATT TTGGTGCCGA CGGCTGCTTA 25701 .......... .......... .......... .......... .......... .......... 225 TTGGAGTGAG AAATACAATC AAGCGGTGAC ATATGCGTCG GAGAACGGCT ATACGGCGGC 25641 .......... .......... .......... .......... .......... .......... 225 GCATTATTTA CCGATTATTC CCGTAGAGAG GATCGCGAAG GTGTTTGAAG GCGGCGCCAC 25581 .......... .......... .......... .......... .......... .......... 225 CGCTGAAAAC GAGCAGTCCG TTCCCTTGAC CGACGGCACT GTTGCTCCGG CGCAATGACC 25521 .......... .......... .......... .......... .......... .......... 225 ATTTTACATT ACTGTACTGG GGGGGGGGGG GGGGGGGGGC TTAATGGGCC GTCAGGTTAA 25461 .......... .......... .......... .......... .......... .......... 225 TAACTTGGTT TATGTTTGTC GGTAGTAATT GTTCATCTTT ATATCGTGAG CCACTTCTTA 25401 .......... .......... .......... .......... .......... .......... 225 AGTTCCTTAA TATATTGTAT TTAGTAATTA TCCTAAATCA CCAAATTTAA ATTCTTGAAC 25341 .......... .......... .......... .......... .......... .......... 225 ATATCATATT GTATCAACTT TTAATCAAGC AGGTGAAACA AAATACAAGA ATAAAGAGGT 25281 .......... .......... .......... .......... .......... .......... 225 TTTAGGGAGT ATCGATGGTA AAGAACATCA AAAGAAATGA TTTGATTTTG TAACTTTTCA 25221 .......... .......... .......... .......... .......... .......... 225 CAAAGTTGAA TAAGACGTGC GTTTATTAGA TTTCGATCAG TCTAGGAAAA TATTTGTACA 25161 .......... .......... .......... .......... .......... .......... 225 TTGTCCCGAG ATCATTTCCA TCATATTTTT AAGCCTCACG TGTTTAAATC GAAGAAATTT 25101 .......... .......... .......... .......... .......... .......... 225 TCACATATAG CCACTTAAAT ATAATTAATT ACTCTCCATA GATATAGTTT GATAATTATA 25041 .......... .......... .......... .......... .......... .......... 225 ATTTGTAGCT ACATGTTATA TGAAGAAAAG AGATGAGCGA GACTAGGAGA GTGACGAGAG 24981 .......... .......... .......... .......... .......... .......... 225 AGGCGAGAGA GGGGAGAAAA GAGTGGGAGA AAGGTGAATT ATATATGTAT ATTGGTTAGA 24921 .......... .......... .......... .......... .......... .......... 225 TATTTGTATA TTATACCTAT GTATTTGTAT ATATGGCAAG AGAGATTGGG AGAG 24867 ||||| | | | || .......... .......... .......... .......... TGAGATGGTG AAAG 239 hqPGS_C09HBa0099P03.1-1-_SGN-E210228+ (28940 28823) ******************************************************************************** EST sequence 19 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 37776 to 29166): Exon 1 36019 35709 ( 311 n); cDNA 114 425 ( 312 n); score: 0.849 Intron 1 35708 34441 (1268 n); Pd: 0.000 (s: 0.74), Pa: 0.992 (s: 0) Exon 2 34440 34434 ( 7 n); cDNA 426 432 ( 7 n); score: 0.571 Intron 2 34433 33878 ( 556 n); Pd: 0.517 (s: 0), Pa: 0.000 (s: 0) Exon 3 33877 33852 ( 26 n); cDNA 433 458 ( 26 n); score: 0.577 Intron 3 33851 31312 (2540 n); Pd: 0.456 (s: 0), Pa: 0.987 (s: 0) Exon 4 31311 31290 ( 22 n); cDNA 459 477 ( 19 n); score: 0.773 PPA cDNA 12 1 MATCH C09HBa0099P03.1-1- SGN-E540411+ 0.849 366 0.427 C PGS_C09HBa0099P03.1-1-_SGN-E540411+ (36019 35709,34440 34434,33877 33852,31311 31290) Alignment (genomic DNA sequence = upper lines): GAAAATGCAC AAGTACCCCC TCAACCTATG TCTGAAATCT CAGAGACACA CTTATACTAT 35960 || ||||||| |||||||||| |||||||||| | ||||| |||||||||| |||||||||| GATAATGCAC AAGTACCCCC TCAACCTATG CCCGAAATTC CAGAGACACA CTTATACTAT 173 ACCAAGGTCC CATGACCCCC CTGAACTTAT TTTATAAGTA ATTTTCTACA CTTTTTTGGC 35900 || ||||||| || |||||| |||||||||| |||||||||| ||||||||| | ||||| || ACTAAGGTCC TATTACCCCC CTGAACTTAT TTTATAAGTA ATTTTCTACC CCTTTTTAGC 233 CTACGTGGCA CTAGCTTGAA AAAAAAAT-A ACCAGCGTTG GGCCCACAAA ATAGTGTCAC 35841 |||||||||| |||| || || |||||| | | || | | ||| ||||||||| |||||| ||| CTACGTGGCA CTAGTTTAAA AAAAAAGTCA ACAACCATTG GGCCCACAAG ATAGTGCCAC 293 GTAAGCCGAA AAGGGGTAGA AAATTATTAA TAAAATAAGT TCAGGGGATA ATAGGACCTT 35781 ||| | | || |||||||| | |||||||||| | |||||||| ||||||| || ||| || ||| GTAGGTCTAA AAGGGGTAAA AAATTATTAA T-AAATAAGT TCAGGGGGTA ATAAGATCTT 352 AGTATAGTAC AAGTTTGTTT CTGAAATTTC GGGCATAGGT TGA-GGGGTA CTTGTGCATT 35722 ||||| ||| |||| | | | |||| |||| || |||||| | | |||||| |||| |||| AGTATGGTAT AAGTGTATCT CTGAGATTTT GGACATAGGC TAAGGGGGTA CTTGGACATT 412 ATCCCTAAAA AAAATTATTA TTTGAGTTTT AAATGCCACA TGTCAACACA TGTCATCAAG 35662 ||||| | || || ATCCCAACAA TAA....... .......... .......... .......... .......... 425 TGAGTGGTTA TTTATCTTTA TATTTAAAAT CATTAGTTCA GAATTATTTT TTTACATATA 35602 .......... .......... .......... .......... .......... .......... 425 TGACATGACA TGTGTCTTTG TTTAATTCGT CACTTTGACA TGCCATCGCC AAGTGTATTA 35542 .......... .......... .......... .......... .......... .......... 425 CACACACTTT GTATTTTTGG ATGATTATTA AAATAGTGTC AAAATGACAC AACAAGATCC 35482 .......... .......... .......... .......... .......... .......... 425 TACATGAGGG GTTAAAATGA ACATCGTCCA GTTGAGGTGT CTAAGTGAAA CTTTGTGCCA 35422 .......... .......... .......... .......... .......... .......... 425 AGTTTAAGGG ACCATTGGTG GGTTAGACCT TTATTATAAT GGTATGATTT GATATATGTC 35362 .......... .......... .......... .......... .......... .......... 425 TTTTATGAAA CGCAAAATTG TAATACATAA ATATAATTTC ATGATATAAT AATATGAACT 35302 .......... .......... .......... .......... .......... .......... 425 TAAGTTATTA ACTGTGTTTA TTGAAAGTCA TGAATATGAA TTTTTGGGCT AATCCATGAA 35242 .......... .......... .......... .......... .......... .......... 425 CATATGAGCT AAAGAGAGTT ATAATTGATC GGAAGTGCAT GAATCTAAAT GATGAACGTA 35182 .......... .......... .......... .......... .......... .......... 425 TAAAACTTCA TTTGTCAACG CTGTTAAGGA TAATATCAGG GGGAATTGTT CTTTTATGCC 35122 .......... .......... .......... .......... .......... .......... 425 CCTGATAAGG GATAGTTATA CTTATGGATA CACATGATAT GTACATATAT GTCTCACACC 35062 .......... .......... .......... .......... .......... .......... 425 CAACGAGGTA TGAAATATCA TAGTTGATTG GGTCGAGATC AAACTTCATG CATTCACATA 35002 .......... .......... .......... .......... .......... .......... 425 GTATTTGTAT CAATTATACT GACAGAATTT CATTACGATA AAGAAATATA TGATAAAAAG 34942 .......... .......... .......... .......... .......... .......... 425 ATGTACCATT AAGATAGTGT TAACGATATT ATCGCTTAAT CTTCGTATGT TATACTATGC 34882 .......... .......... .......... .......... .......... .......... 425 TTTATGTTTT TAGTGATCTG GTATGTACTG ATATGTTTAC ATACAATACT ATTTAATATG 34822 .......... .......... .......... .......... .......... .......... 425 TACTTACATC CCTTTTATCG AGGGTGTTGC ATATACACAT ACATGTGATC AAGTCACTCA 34762 .......... .......... .......... .......... .......... .......... 425 CTAGGTCCCA TATTTTCTGC TAGTTGGGGA GCCTCCTTTC TGTTTCCCAA GACTTAATTT 34702 .......... .......... .......... .......... .......... .......... 425 ACGTATTTCT AGTACTTTAT ATTTATGTGT TTGAAGTATA TCAATGGTCT TGTCCTAATA 34642 .......... .......... .......... .......... .......... .......... 425 GATACTTCTC AGTCATGTTT AGAGATTTCA TAAGAGATAC ATGGTTATGT TTCAGATTGA 34582 .......... .......... .......... .......... .......... .......... 425 ATCTTCATGT CTTTTTTTAA TGATTTCAAT TCCACAATTT ATGTGTTATA CAAGTGTATT 34522 .......... .......... .......... .......... .......... .......... 425 CTTTTGCAGA ACTTGTCTCT TTGATTGCTT TTAAACTGCA CTTTCACTCA TGTCTTGATG 34462 .......... .......... .......... .......... .......... .......... 425 TATGCTCATG TCCAATGCCA GGTTATGGGT ACGCTTAGAG CAACAATTAC ATCGAGTGTT 34402 | | || .......... .......... .ATAAAGG.. .......... .......... .......... 432 GGTCATGTTC AATGTGTAGG CTCAAAGCGA CATATTACAA AAATAGTCTT AGTTATTCAG 34342 .......... .......... .......... .......... .......... .......... 432 TATTCAAATC TATATACATG ATCTTAATTA TTCTAACAAG TACATTTATA TTCTGTCATT 34282 .......... .......... .......... .......... .......... .......... 432 TTTCATCTTA GTGAAAACAA ATGAGGTTTT AGTCCATTAT CCTAAATGTA GATTTAAATA 34222 .......... .......... .......... .......... .......... .......... 432 CGTACATTTA TATTTCGACT TTTACTTATT ATGTTCGAAA ATCAAGAGAT AATTTACAAT 34162 .......... .......... .......... .......... .......... .......... 432 CTTATGATTA GTATGGAGAA TAGTTTACAA TCTTATGTTT AGCATGGAGG AAAATATTCA 34102 .......... .......... .......... .......... .......... .......... 432 AAAAAAAAAT GTTCTTCTAT TATTATTTTT ATGTTTAGTT GGTCAAAATA TTTAGAAAAA 34042 .......... .......... .......... .......... .......... .......... 432 ATAAGATCTT TAAACATGAG GAAATTGACC TCTCTAATGG AAAAAAAAAC AGTTACGTAA 33982 .......... .......... .......... .......... .......... .......... 432 GTGTTATTCC AAATTTATTG TCTCCTTCCC GCCCATTCAA TCTCCTCAAC TCCCACCCCT 33922 .......... .......... .......... .......... .......... .......... 432 TGATTATCCC CTCCCCCCAC CCCCCATACA CCAATCGATT CAACCTCTAT CATATTTTGT 33862 | || ||| || .......... .......... .......... .......... ....ATATAA CATGATTCAA 448 TAAACAACAT GTAGATTCTC TTGAATAATA TTTTCTTGCT TAGTTATCTA CTAAAAAGTA 33802 | |||||| AAGACAACAC .......... .......... .......... .......... .......... 458 ATTAAAAAAC ACTTTGTTTT TCAAGATGAC ATTTGCTGGG AAAAACTTAT TTTTCATACC 33742 .......... .......... .......... .......... .......... .......... 458 AAACACATTT GACCTGTTTT TCTAATCATT ATAGAAGTGT TTATATACAT TACAATGAAA 33682 .......... .......... .......... .......... .......... .......... 458 AAGTGGGCTA ATACAGAAAG AGGCCCTCCC AAACTTTGTA AGTATTGGGT CCAACAAAGG 33622 .......... .......... .......... .......... .......... .......... 458 CACAAAGCCC ATATACTGGA ATTTATGGTT TCATAAATGC AAGTGTTGTT GATAAAAATA 33562 .......... .......... .......... .......... .......... .......... 458 CCACATCGTA ATGTACGTGA GTAAGCCAAC AGCTACAAGA AATATATAAG AGACTTGTGC 33502 .......... .......... .......... .......... .......... .......... 458 TACTAACAAA AGATTCACGC AGCCACGCAG TGAGCACATA GCGAACTATT CTTTCGCCTT 33442 .......... .......... .......... .......... .......... .......... 458 TTACTAAAGA ATACCGTGCG CGCGCTGCAA TTAGTGGCAT ACGCTAATTT TTGGAGGGAT 33382 .......... .......... .......... .......... .......... .......... 458 TTTCTTAACT GAAGATCCCA ACAATACTAA TAACAAAATT TTCTGGGTTG TTTATAAAGT 33322 .......... .......... .......... .......... .......... .......... 458 AAGTTTAAGA CCCTCTAAAT GTGGTTAAAT TACTGTGGAA ATCGAAAAAA TGTGGTTAAG 33262 .......... .......... .......... .......... .......... .......... 458 ATTACTTTGA AAGTTATTTC AACTGTCATA GTTTTCTTAA ATTATGCTCC TTTCGTCCCA 33202 .......... .......... .......... .......... .......... .......... 458 ATAAATGTGG TTAAATTAAT GTGGAAGTCG AAAAAATGTT AGTTAAATTA TTTTGGAAGT 33142 .......... .......... .......... .......... .......... .......... 458 CATTTTAACT GTTATTATTT TCTTAAATTA TATTCCTTCG TCTCATTTTA TATGGCAAAA 33082 .......... .......... .......... .......... .......... .......... 458 TTGTTAAACA ATTATAATAT ATATAAATAT AATTTCATGA TATGATAAGA TGAACTTAAG 33022 .......... .......... .......... .......... .......... .......... 458 TTATGAACTA CGTTCATTAA AAGTCATGAA TATAAATTTT TGGGCTAATC TGTGAACATA 32962 .......... .......... .......... .......... .......... .......... 458 TGACCTAGAG ACAATTATAG TTGATCGAAA GTGCATGAAT CTAAATGATG AACGTATAAA 32902 .......... .......... .......... .......... .......... .......... 458 ACTTCATTTG CCAACACTGT TAAGGATAAT ATCTTGTTGA TTTGGGGGAA TTGTTCTTTT 32842 .......... .......... .......... .......... .......... .......... 458 ATGCTTCTGA TAAGGGATAG TTATACTTAT AGATCCACAT GATATGTACA CATATGTCTC 32782 .......... .......... .......... .......... .......... .......... 458 CACCTTAGTT GATTGGGTAG ATCAAACTTC ATGCATTCAC ATAGTATTTG TATCGTTTAT 32722 .......... .......... .......... .......... .......... .......... 458 TATATTTTCA GAATCTTATT ATTGATAAAA AAAAATATGA TAAAAAGATG TACCATTAAG 32662 .......... .......... .......... .......... .......... .......... 458 GTAGTATTAA CGACCTTATC TCTTAATCTT CATATGTTAT ACTATGCTAT ATGTTTGTAT 32602 .......... .......... .......... .......... .......... .......... 458 TGATCTGGCA TGTACCGATA TGTTTAGATA CAAATACTAT TTAATATGTA ATTACATCAC 32542 .......... .......... .......... .......... .......... .......... 458 TTTTATCGAG AGTGTTACAT ATACACATAC ATGTGATCAA GTCGCTCACT GGGTCCCATA 32482 .......... .......... .......... .......... .......... .......... 458 TTTTCTGCTA ATTGGGGAGC CCTTCTCTGT TTCTCAAAAG ACTTAATATA CATATTTCTA 32422 .......... .......... .......... .......... .......... .......... 458 GTACTTTATA ATTATGTGTT TAAGGTAATA CCAAGGGCCT TGTCCTAATA GATACTTCTC 32362 .......... .......... .......... .......... .......... .......... 458 GATCATGTTT AGAGGTTTAA TAGAGAGATA CATGGTTATG TGTCAGGTTG AATTTTCGTG 32302 .......... .......... .......... .......... .......... .......... 458 TCTTTTTTTA ACGATTCCAA TTTCACAACT TATGTGTTAT ACAAGTGTTT TCTTTTACTG 32242 .......... .......... .......... .......... .......... .......... 458 AACTTGTCTC TTTAAATGCT TTTAAACTGC ACCTTCACTC ATTCTTGATG TATGCTCATG 32182 .......... .......... .......... .......... .......... .......... 458 TCCAATGTCA CGTTATGGGT ACACGCTTAG AGCAACAATG ATATCGAGTG TTGGTCATTT 32122 .......... .......... .......... .......... .......... .......... 458 TCAATGTGTA GGCTCAAAGC GACATATTAA AATATATTAT TCAGTATTCA AATCTATATA 32062 .......... .......... .......... .......... .......... .......... 458 CATGATCATA ATTATTCTAA CAAGTACATT TATATTCAGT CATTTTTCAT CTTAGTGAAA 32002 .......... .......... .......... .......... .......... .......... 458 ACAAATGAGG TTTTAATCCA TTGTCTTAAA TGTAGATTCA AATACGTACA TTTATATTTC 31942 .......... .......... .......... .......... .......... .......... 458 GACTTTTACT TATTATGTTC GAAAAATCAA AAGATATTTT ACAATCTTAT GATTAGTATA 31882 .......... .......... .......... .......... .......... .......... 458 ATAGAGAATA GCTTACAATT TTATGTTCAG CATGGAGGAA AATATTCAAA AAAAAATGTT 31822 .......... .......... .......... .......... .......... .......... 458 TTTCTATTAT TATTTTTTTA TGTTTAGCTG GTCAAAATAT TTAGAAAAAT AAGGTCTTTA 31762 .......... .......... .......... .......... .......... .......... 458 ATGAAAAAAA AAAACAATTA CATAAGTGTT ATTCCAAATG TATCGTCTCC TTCCCGCCCA 31702 .......... .......... .......... .......... .......... .......... 458 TTCAATCTCC TCAACTCTCA CCCCTTGATC ATCCCCTCCC CCCACCCCCA TACACCAATC 31642 .......... .......... .......... .......... .......... .......... 458 CATTCAACCT CTATCATATT TTGTTAAACA ACATATAGAT TCTCTTTTGA ATAATATTTT 31582 .......... .......... .......... .......... .......... .......... 458 CTTTCTTAAT TATCTACCAC TAAAAAATTA TTGAAAAACA TTGTTTTTCA AGATGACATT 31522 .......... .......... .......... .......... .......... .......... 458 TGCTGGGAAA AACTTATTTT TCATCCCAAA CACATTTGAC CTGTTTTTCT AATCATTATA 31462 .......... .......... .......... .......... .......... .......... 458 GAATTGTTTA CATTACAATG AAAAAGTGGG CTAATACAGA AAGTGGCCCT CCCAAACTTG 31402 .......... .......... .......... .......... .......... .......... 458 TAAGTACTGG GTCCAACAAA GGCACAAAGC CCATATACTG GAATTTCATA AATGGAAGTG 31342 .......... .......... .......... .......... .......... .......... 458 TTGTTGATAA AGTACCACAT CGTAATGTAG GTGAGTAAGC CAACAGCTAC AA 31290 |||| ||| | | || |||| || .......... .......... .......... GTGA-TAA-C C-ACTTCTAC AA 477 hqPGS_C09HBa0099P03.1-1-_SGN-E540411+ (36019 35709,34440 34434,33877 33852,31311 31290) ******************************************************************************** EST sequence 9 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 42732 to 33416): Exon 1 36019 35717 ( 303 n); cDNA 444 747 ( 304 n); score: 0.781 Intron 1 35716 34441 (1276 n); Pd: 0.000 (s: 0.91), Pa: 0.992 (s: 0) Exon 2 34440 34436 ( 5 n); cDNA 748 752 ( 5 n); score: 0.800 PPA cDNA 847 858 MATCH C09HBa0099P03.1-1- SGN-E540411- 0.781 308 0.359 C PGS_C09HBa0099P03.1-1-_SGN-E540411- (36019 35717,34440 34436) Alignment (genomic DNA sequence = upper lines): GAAAATGCAC AAGTACCCCC TCAACCTATG TCTGAAATCT CAGAGACACA CTTATACTAT 35960 || |||| | |||||||||| | | |||||| || |||||| |||||| ||| ||||||| || GATAATGTCC AAGTACCCCC TTAGCCTATG TCCAAAATCT CAGAGATACA CTTATACCAT 503 ACCAAGGTCC CATGACCCCC CTGAACTTAT TTTATAAGTA ATTTTCTACA CTTTTTTGGC 35900 || ||| || || | |||| ||||||||| ||||| | || ||||| ||| | |||| | | ACTAAGATCT TATTA-CCCC CTGAACTTA- TTTATTAATA ATTTTTTACC CCTTTTAGAC 561 CTACGTGGCA CTAGCTTGAA AAAAAAATAA CCAGCG-TTG GGCCCACAAA ATAGTGTCAC 35841 |||||||||| ||| |||| ||| | | ||| ||||| ||| CTACGTGGCA CTATCTTGTG GGCCCAATGG TTGTTGACTT TTTTTTTAAA CTAGTGCCAC 621 GTAAGCCGAA AAGGGGTAGA AAATTATTAA TAAAATAAGT TCA-GGGGAT AATAGGACCT 35782 ||| || || |||||||||| |||||| | | |||||||||| ||| |||| | |||||||||| GTAGGCTAAA AAGGGGTAGA AAATTACTTA TAAAATAAGT TCAGGGGGGT AATAGGACCT 681 TAGTATAGTA CAAGTTTGTT TCTGAAATTT CGGGCATAGG TTGA-GGGGT ACTTGTGCAT 35723 |||||||||| |||| ||| |||| ||||| |||||||||| |||| ||||| |||||||||| TAGTATAGTA TAAGTGTGTC TCTGGAATTT CGGGCATAGG TTGAGGGGGT ACTTGTGCAT 741 TATCCCTAAA AAAAATTATT ATTTGAGTTT TAAATGCCAC ATGTCAACAC ATGTCATCAA 35663 |||||| TATCCC.... .......... .......... .......... .......... .......... 747 GTGAGTGGTT ATTTATCTTT ATATTTAAAA TCATTAGTTC AGAATTATTT TTTTACATAT 35603 .......... .......... .......... .......... .......... .......... 747 ATGACATGAC ATGTGTCTTT GTTTAATTCG TCACTTTGAC ATGCCATCGC CAAGTGTATT 35543 .......... .......... .......... .......... .......... .......... 747 ACACACACTT TGTATTTTTG GATGATTATT AAAATAGTGT CAAAATGACA CAACAAGATC 35483 .......... .......... .......... .......... .......... .......... 747 CTACATGAGG GGTTAAAATG AACATCGTCC AGTTGAGGTG TCTAAGTGAA ACTTTGTGCC 35423 .......... .......... .......... .......... .......... .......... 747 AAGTTTAAGG GACCATTGGT GGGTTAGACC TTTATTATAA TGGTATGATT TGATATATGT 35363 .......... .......... .......... .......... .......... .......... 747 CTTTTATGAA ACGCAAAATT GTAATACATA AATATAATTT CATGATATAA TAATATGAAC 35303 .......... .......... .......... .......... .......... .......... 747 TTAAGTTATT AACTGTGTTT ATTGAAAGTC ATGAATATGA ATTTTTGGGC TAATCCATGA 35243 .......... .......... .......... .......... .......... .......... 747 ACATATGAGC TAAAGAGAGT TATAATTGAT CGGAAGTGCA TGAATCTAAA TGATGAACGT 35183 .......... .......... .......... .......... .......... .......... 747 ATAAAACTTC ATTTGTCAAC GCTGTTAAGG ATAATATCAG GGGGAATTGT TCTTTTATGC 35123 .......... .......... .......... .......... .......... .......... 747 CCCTGATAAG GGATAGTTAT ACTTATGGAT ACACATGATA TGTACATATA TGTCTCACAC 35063 .......... .......... .......... .......... .......... .......... 747 CCAACGAGGT ATGAAATATC ATAGTTGATT GGGTCGAGAT CAAACTTCAT GCATTCACAT 35003 .......... .......... .......... .......... .......... .......... 747 AGTATTTGTA TCAATTATAC TGACAGAATT TCATTACGAT AAAGAAATAT ATGATAAAAA 34943 .......... .......... .......... .......... .......... .......... 747 GATGTACCAT TAAGATAGTG TTAACGATAT TATCGCTTAA TCTTCGTATG TTATACTATG 34883 .......... .......... .......... .......... .......... .......... 747 CTTTATGTTT TTAGTGATCT GGTATGTACT GATATGTTTA CATACAATAC TATTTAATAT 34823 .......... .......... .......... .......... .......... .......... 747 GTACTTACAT CCCTTTTATC GAGGGTGTTG CATATACACA TACATGTGAT CAAGTCACTC 34763 .......... .......... .......... .......... .......... .......... 747 ACTAGGTCCC ATATTTTCTG CTAGTTGGGG AGCCTCCTTT CTGTTTCCCA AGACTTAATT 34703 .......... .......... .......... .......... .......... .......... 747 TACGTATTTC TAGTACTTTA TATTTATGTG TTTGAAGTAT ATCAATGGTC TTGTCCTAAT 34643 .......... .......... .......... .......... .......... .......... 747 AGATACTTCT CAGTCATGTT TAGAGATTTC ATAAGAGATA CATGGTTATG TTTCAGATTG 34583 .......... .......... .......... .......... .......... .......... 747 AATCTTCATG TCTTTTTTTA ATGATTTCAA TTCCACAATT TATGTGTTAT ACAAGTGTAT 34523 .......... .......... .......... .......... .......... .......... 747 TCTTTTGCAG AACTTGTCTC TTTGATTGCT TTTAAACTGC ACTTTCACTC ATGTCTTGAT 34463 .......... .......... .......... .......... .......... .......... 747 GTATGCTCAT GTCCAATGCC AGGTTAT 34436 |||| .......... .......... ..TTTAT 752 hqPGS_C09HBa0099P03.1-1-_SGN-E540411- (36019 35717) ******************************************************************************** EST sequence 13 -strand 479 n (File: SGN-E290510-) 1 ATGGGCTTTA CATTTAGCCT GTTTAGGTTC TTCTCTTCTA ATGGGTCTTT CTGCTTGGCT 61 TGTTTGGGCT GAAGGTGGGT TTCATCGTCA ACCTATGGCT ATAATTTTGT ATTTAGCTCA 121 ATTAGGGTTG AGTTTGGCTT GGGATCCAGT TGTGTTCAAA GCAGGTGCTA CTAGAATTGG 181 GTTAGTGTTA TGTGTGGCTT TGTTTGGAGT GTTGATTGGT TGTTTTAGGG CTTTTAAAAA 241 TGTGAATCCT ATTGCTGGGG ATTTGGTTAA ACCTTGTTTT GGATGGGCTG TGCTTTTGAG 301 TTTAGCAAAT CTTAAGCTTG TGTATCATTA GGAAGAAATA AATAATATGC CCTTGTTTTT 361 TGTTTTGTTT TGGCTTGTGA GGCTTATGTA CTGTAAATTT ACATGTTCTA TATTTATGTT 421 TTAATTAAAT TAAATTTACA TGTGTGTTCT ATAAAAAAAA AAAAAAAAAA AACTCGAGA Predicted gene structure (within gDNA segment 42605 to 40683): Exon 1 41995 41544 ( 452 n); cDNA 1 452 ( 452 n); score: 0.998 PPA cDNA 453 473 MATCH C09HBa0099P03.1-1- SGN-E290510- 0.998 452 0.944 C PGS_C09HBa0099P03.1-1-_SGN-E290510- (41995 41544) Alignment (genomic DNA sequence = upper lines): ATGGGCTTTA CATTTAGCCT GTTTAGGTTC TTCTCTTCTA ATGGGTCTTT CTGCTTGGCT 41936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGGCTTTA CATTTAGCCT GTTTAGGTTC TTCTCTTCTA ATGGGTCTTT CTGCTTGGCT 60 TGTTTGGGCT GAAGGTGGGT TTCATCGTCA ACCTATGGCT ATAATTTTGT ATTTAGCTCA 41876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGGGCT GAAGGTGGGT TTCATCGTCA ACCTATGGCT ATAATTTTGT ATTTAGCTCA 120 ATTAGGGTTG AGTTTGGCTT GGGATCCAGT TGTGTTCAAA GCAGGTGCTA CTAGAATTGG 41816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGGGTTG AGTTTGGCTT GGGATCCAGT TGTGTTCAAA GCAGGTGCTA CTAGAATTGG 180 GTTAGTGTTA TGTGTGGCTT TGTTTGGAGT GTTGATTGGT TGTTTTAGGG CTTTTAAAAA 41756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGTGTTA TGTGTGGCTT TGTTTGGAGT GTTGATTGGT TGTTTTAGGG CTTTTAAAAA 240 TGTGAATCCT ATTGCTGGGG ATTTGGTTAA ACCTTGTTTT GGATGGGCTG TGCTTTTGAG 41696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAATCCT ATTGCTGGGG ATTTGGTTAA ACCTTGTTTT GGATGGGCTG TGCTTTTGAG 300 TTTAGCAAAT CTTAAGCTTG TGTATCATTA GGAAGAAATA AATAATATGC ACTTGTTTTT 41636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTAGCAAAT CTTAAGCTTG TGTATCATTA GGAAGAAATA AATAATATGC CCTTGTTTTT 360 TGTTTTGTTT TGGCTTGTGA GGCTTATGTA CTGTAAATTT ACATGTTCTA TATTTATGTT 41576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTGTTT TGGCTTGTGA GGCTTATGTA CTGTAAATTT ACATGTTCTA TATTTATGTT 420 TTAATTAAAT TAAATTTACA TGTGTGTTCT AT 41544 |||||||||| |||||||||| |||||||||| || TTAATTAAAT TAAATTTACA TGTGTGTTCT AT 452 hqPGS_C09HBa0099P03.1-1-_SGN-E290510- (41995 41544) ******************************************************************************** EST sequence 14 -strand 501 n (File: SGN-E207956-) 1 ATTCGGATCA AGTTACCAGT ACGTTTCAAT GGAGAAGCCT TTCTGGTTTC CGCGTCTATG 61 GGCTTTACAT TTAGCCTGTT TAGGTTCTTC TCTTCTAATG GGTCTTTCTG CTTGGCTTGT 121 TTGGGCTGAA GGTGGGTTTC ATCGTCAACC TATGGCTATA ATTTTGTATT TAGCTCAATT 181 AGGGTTGAGT TTGGCTTGGG ATCCAGTTGT GTTCAAAGCA GGTGCTACTA GAATTGGGTT 241 AGTGTTATGT GTGGCTTTGT TTGGAGTGTT GATTGGTTGT TTTAGGGCTT TTAAAAATGT 301 GAATCCTATT GCTGGGGATT TGGTTAAACC TTGTTTTGGA TGGGCTGTGC TTTTGAGTTT 361 AGCAAATCTT AAGCTTGTGT ATCATTAGGA AGAAATAAAT AATATGCACT TGTTTTTTGT 421 TTTGTTTTGG CTTGTGAGGC TTATGTACTG TAAATTTACA TGTTCTATAT TTATGTTTTA 481 ATTAAATTAA ATTTACATGT G Predicted gene structure (within gDNA segment 42662 to 40952): Exon 1 42052 41552 ( 501 n); cDNA 1 501 ( 501 n); score: 1.000 MATCH C09HBa0099P03.1-1- SGN-E207956- 1.000 501 1.000 C PGS_C09HBa0099P03.1-1-_SGN-E207956- (42052 41552) Alignment (genomic DNA sequence = upper lines): ATTCGGATCA AGTTACCAGT ACGTTTCAAT GGAGAAGCCT TTCTGGTTTC CGCGTCTATG 41993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCGGATCA AGTTACCAGT ACGTTTCAAT GGAGAAGCCT TTCTGGTTTC CGCGTCTATG 60 GGCTTTACAT TTAGCCTGTT TAGGTTCTTC TCTTCTAATG GGTCTTTCTG CTTGGCTTGT 41933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTACAT TTAGCCTGTT TAGGTTCTTC TCTTCTAATG GGTCTTTCTG CTTGGCTTGT 120 TTGGGCTGAA GGTGGGTTTC ATCGTCAACC TATGGCTATA ATTTTGTATT TAGCTCAATT 41873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGCTGAA GGTGGGTTTC ATCGTCAACC TATGGCTATA ATTTTGTATT TAGCTCAATT 180 AGGGTTGAGT TTGGCTTGGG ATCCAGTTGT GTTCAAAGCA GGTGCTACTA GAATTGGGTT 41813 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTTGAGT TTGGCTTGGG ATCCAGTTGT GTTCAAAGCA GGTGCTACTA GAATTGGGTT 240 AGTGTTATGT GTGGCTTTGT TTGGAGTGTT GATTGGTTGT TTTAGGGCTT TTAAAAATGT 41753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTATGT GTGGCTTTGT TTGGAGTGTT GATTGGTTGT TTTAGGGCTT TTAAAAATGT 300 GAATCCTATT GCTGGGGATT TGGTTAAACC TTGTTTTGGA TGGGCTGTGC TTTTGAGTTT 41693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCCTATT GCTGGGGATT TGGTTAAACC TTGTTTTGGA TGGGCTGTGC TTTTGAGTTT 360 AGCAAATCTT AAGCTTGTGT ATCATTAGGA AGAAATAAAT AATATGCACT TGTTTTTTGT 41633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAAATCTT AAGCTTGTGT ATCATTAGGA AGAAATAAAT AATATGCACT TGTTTTTTGT 420 TTTGTTTTGG CTTGTGAGGC TTATGTACTG TAAATTTACA TGTTCTATAT TTATGTTTTA 41573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTTTGG CTTGTGAGGC TTATGTACTG TAAATTTACA TGTTCTATAT TTATGTTTTA 480 ATTAAATTAA ATTTACATGT G 41552 |||||||||| |||||||||| | ATTAAATTAA ATTTACATGT G 501 hqPGS_C09HBa0099P03.1-1-_SGN-E207956- (42052 41552) Total number of EST alignments reported: 28 ________________________________________________________________________________ Predicted gene locations (10) in segment 1 to 45342: PGL 1 (- strand): 1689 1215 AGS-1 (1689 1629,1545 1372,1286 1215) SCR (e 1.000 d 0.997 a 0.988,e 1.000 d 0.877 a 0.929,e 1.000) Exon 1 1689 1629 ( 61 n); score: 1.000 Intron 1 1628 1546 ( 83 n); Pd: 0.997 Pa: 0.988 Exon 2 1545 1372 ( 174 n); score: 1.000 Intron 2 1371 1287 ( 85 n); Pd: 0.877 Pa: 0.929 Exon 3 1286 1215 ( 72 n); score: 1.000 PGS (1689 1629,1545 1372,1286 1215) SGN-E271714+ PGS (1689 1629,1545 1372,1286 1215) SGN-E273058+ PGS (1516 1372,1286 1215) SGN-E330094+ 3-phase translation of AGS-1 (-strand): . . . . . . 1689 CCGTCTTGATAGCTCAAGTAATGATGAAATTGATAAACTTGCTATTAATGAACTCTTTGA P S - - L K - - - N - - T C Y - - T L - R L D S S S N D E I D K L A I N E L F E V L I A Q V M M K L I N L L L M N S L . : . . . . . 1629 G : GTTGCTTTAAAAGAAAGTAAAAGTGGCCCTCTTGTTTTGTTCATCAAAGACATTGAGAA : G C F K R K - K W P S C F V H Q R H - E : V A L K E S K S G P L V L F I K D I E K R : L L - K K V K V A L L F C S S K T L R . . . . . . 1486 GTCTATGGTGGGTAATCCTGAGGCCTATGCTGCTTTCAAGATTAAGCTCGAGCATTTGCC V Y G G - S - G L C C F Q D - A R A F A S M V G N P E A Y A A F K I K L E H L P S L W W V I L R P M L L S R L S S S I C . . . . . . : 1426 AGAGAATGTTGTTGCCATAGCTTCCCATGCCCAGTCGGACAGCCGAAAGGAGAAA : TCGCA R E C C C H S F P C P V G Q P K G E : I A E N V V A I A S H A Q S D S R K E K : S H Q R M L L P - L P M P S R T A E R R N : R . . . . . . 1281 TCCTGGTGGCTTGCTATTTACAAAATTTGGAAGTAACCAAACAGCATTGCTTGACCTTGC S W W L A I Y K I W K - P N S I A - P C P G G L L F T K F G S N Q T A L L D L A I L V A C Y L Q N L E V T K Q H C L T L . 1221 CTTCCCA L P F P P S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-1_AGS-1_PPS_1 (1688 1629,1545 1372,1286 1215) (frame '2'; 306 bp, 102 residues) 1 RLDSSSNDEI DKLAINELFE VALKESKSGP LVLFIKDIEK SMVGNPEAYA AFKIKLEHLP 61 ENVVAIASHA QSDSRKEKSH PGGLLFTKFG SNQTALLDLA FP PGL 2 (- strand): 4246 2501 AGS-1 (4246 4114,3941 3820,3734 3643,2709 2501) SCR (e 0.752 d 0.958 a 0.859,e 0.820 d 0.956 a 0.729,e 0.859 d 0.206 a 0.997,e 0.823) Exon 1 4246 4114 ( 133 n); score: 0.752 Intron 1 4113 3942 ( 172 n); Pd: 0.958 Pa: 0.859 Exon 2 3941 3820 ( 122 n); score: 0.820 Intron 2 3819 3735 ( 85 n); Pd: 0.956 Pa: 0.729 Exon 3 3734 3643 ( 92 n); score: 0.859 Intron 3 3642 2710 ( 933 n); Pd: 0.206 Pa: 0.997 Exon 4 2709 2501 ( 209 n); score: 0.823 PGS (4246 4114,3941 3820,3734 3643,2709 2501) SGN-E314709+ 3-phase translation of AGS-1 (-strand): . . . . . . 4246 AACTACTCAAGGATTTTGATCGTCCAGTTTCTGCTTTAACTAGGCGCCAAACATTTAAAA N Y S R I L I V Q F L L - L G A K H L K T T Q G F - S S S F C F N - A P N I - K L L K D F D R P V S A L T R R Q T F K . . . . . . 4186 ATGCCTTACAGCAAGGAGTAGTTGATTTCAACACTATTGATGTCACATTTGAAAATTTTC M P Y S K E - L I S T L L M S H L K I F C L T A R S S - F Q H Y - C H I - K F S N A L Q Q G V V D F N T I D V T F E N F . . : . . . . 4126 CATATTACTTATG : TGAAAATACAAAGAATGTTCTGATTGCTTCCACTTATATACACTTGA H I T Y : V K I Q R M F - L L P L I Y T - I L L M : - K Y K E C S D C F H L Y T L E P Y Y L C : E N T K N V L I A S T Y I H L . . . . . . 3894 AGTGTAACGGGTTTGCAAAATTTGCATCAGATCTTCCCACAGTGTGCCCTAGGATTTTGC S V T G L Q N L H Q I F P Q C A L G F C V - R V C K I C I R S S H S V P - D F A K C N G F A K F A S D L P T V C P R I L . . : . . . . 3834 TATCAGGTCCAGCAG : GTTCAGAGATTTATCAGGAGACATTGGCCAAAGCACTTGCTAAGT Y Q V Q Q : V Q R F I R R H W P K H L L S I R S S R : F R D L S G D I G Q S T C - V L S G P A : G S E I Y Q E T L A K A L A K . . . . . : . 3689 ACTTTTGTGCTAAGCTAATGATAGTTGATTCTCTCTTGCTGCCTGGT : GTTTCAAGTTCCA T F V L S - - - L I L S C C L V : F Q V P L L C - A N D S - F S L A A W : C F K F Q Y F C A K L M I V D S L L L P G : V S S S . . . . . . 2696 AAGATGTCGAGCCTGTTAAAGTAAGCTCAAAACCAGAGAGAGCTAGTGTATTTGCTAAAC K M S S L L K - A Q N Q R E L V Y L L N R C R A C - S K L K T R E S - C I C - T K D V E P V K V S S K P E R A S V F A K . . . . . . 2636 GTGCGGCGCAAGCGGCAGCATTGCATCTGAATAAAAAGCCGGCTTCAAGTGTTGAGGCTG V R R K R Q H C I - I K S R L Q V L R L C G A S G S I A S E - K A G F K C - G - R A A Q A A A L H L N K K P A S S V E A . . . . . . 2576 ATATAACTGGTGGTTCAATTTTAAGTTCTCATGCTCAGCCCAAGCAGGAGGCATCGACTG I - L V V Q F - V L M L S P S R R H R L Y N W W F N F K F S C S A Q A G G I D C D I T G G S I L S S H A Q P K Q E A S T . . 2516 CCTCATCAAAAAACTA P H Q K T L I K K L A S S K N Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-2_AGS-1_PPS_1 (4244 4114,3941 3820,3734 3643,2709 2503) (frame '0'; 552 bp, 184 residues) 1 LLKDFDRPVS ALTRRQTFKN ALQQGVVDFN TIDVTFENFP YYLCENTKNV LIASTYIHLK 61 CNGFAKFASD LPTVCPRILL SGPAGSEIYQ ETLAKALAKY FCAKLMIVDS LLLPGVSSSK 121 DVEPVKVSSK PERASVFAKR AAQAAALHLN KKPASSVEAD ITGGSILSSH AQPKQEASTA 181 SSKN PGL 3 (- strand): 17242 16950 AGS-1 (17242 16950) SCR (e 0.819) Exon 1 17242 16950 ( 293 n); score: 0.819 PGS (17242 16950) SGN-E313355+ PGS (17242 16950) SGN-E313356+ 3-phase translation of AGS-1 (-strand): . . . . . . 17242 TTAGTCTAAAGAGAGTTCTTATTAGTTGAAGGGAGGTGTTCTTTTTTTGTGGAGCTTTGG L V - R E F L L V E G R C S F F V E L W - S K E S S Y - L K G G V L F L W S F G S L K R V L I S - R E V F F F C G A L . . . . . . 17182 ACTCAACTCCTGTCCAGAGTTGTTGAGTTATACTTTGTAAAGGCTGTTGTATCCTGGAGG T Q L L S R V V E L Y F V K A V V S W R L N S C P E L L S Y T L - R L L Y P G G D S T P V Q S C - V I L C K G C C I L E . . . . . . 17122 GGACAAGTCAAAGAGGACTACTGCTGGACCGGTGAAAACATTTGCTGCAGTGGGCTTGAA G Q V K E D Y C W T G E N I C C S G L E D K S K R T T A G P V K T F A A V G L N G T S Q R G L L L D R - K H L L Q W A - . . . . . . 17062 TCTCCTTAAAGAGAGCGAGATATCCGCGCCTCAGCCTGAAGAGATTACTTTCTTCATTTT S P - R E R D I R A S A - R D Y F L H F L L K E S E I S A P Q P E E I T F F I L I S L K R A R Y P R L S L K R L L S S F . . . . . . 17002 ATTTTCAATTGTAATCTTGCAATTTTATTATCTTGTAAGTTTTTTTTCACTAA I F N C N L A I L L S C K F F F T F S I V I L Q F Y Y L V S F F S L Y F Q L - S C N F I I L - V F F H - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-3_AGS-1_PPS_1 (17142 16951) (frame '2'; 192 bp, 64 residues) 1 RLLYPGGDKS KRTTAGPVKT FAAVGLNLLK ESEISAPQPE EITFFILFSI VILQFYYLVS 61 FFSL 3-phase translation of AGS-1 (+strand): . . . . . . 16950 TTAGTGAAAAAAAACTTACAAGATAATAAAATTGCAAGATTACAATTGAAAATAAAATGA L V K K N L Q D N K I A R L Q L K I K - - - K K T Y K I I K L Q D Y N - K - N E S E K K L T R - - N C K I T I E N K M . . . . . . 17010 AGAAAGTAATCTCTTCAGGCTGAGGCGCGGATATCTCGCTCTCTTTAAGGAGATTCAAGC R K - S L Q A E A R I S R S L - G D S S E S N L F R L R R G Y L A L F K E I Q A K K V I S S G - G A D I S L S L R R F K . . . . . . 17070 CCACTGCAGCAAATGTTTTCACCGGTCCAGCAGTAGTCCTCTTTGACTTGTCCCCTCCAG P L Q Q M F S P V Q Q - S S L T C P L Q H C S K C F H R S S S S P L - L V P S R P T A A N V F T G P A V V L F D L S P P . . . . . . 17130 GATACAACAGCCTTTACAAAGTATAACTCAACAACTCTGGACAGGAGTTGAGTCCAAAGC D T T A F T K Y N S T T L D R S - V Q S I Q Q P L Q S I T Q Q L W T G V E S K A G Y N S L Y K V - L N N S G Q E L S P K . . . . . . 17190 TCCACAAAAAAAGAACACCTCCCTTCAACTAATAAGAACTCTCTTTAGACTAA S T K K E H L P S T N K N S L - T P Q K K N T S L Q L I R T L F R L L H K K R T P P F N - - E L S L D - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 20647 21796 AGS-1 (20647 21796) SCR (e 0.994) Exon 1 20647 21796 (1150 n); score: 0.994 PGS (20647 21204) SGN-E318001+ PGS (21095 21796) SGN-E333345+ 3-phase translation of AGS-1 (+strand): . . . . . . 20647 AGTCTGGACACCAAGGATGTTGAAGTGGAACCTGAGCAGGCAGTGTCTGGAACTATATAT S L D T K D V E V E P E Q A V S G T I Y V W T P R M L K W N L S R Q C L E L Y M S G H Q G C - S G T - A G S V W N Y I . . . . . . 20707 GCCAATGGTGACCATTCCGGAGAAAGCGTCGAGCGAGATGTAGTGGAAGTTGAAGTCTCT A N G D H S G E S V E R D V V E V E V S P M V T I P E K A S S E M - W K L K S L C Q W - P F R R K R R A R C S G S - S L . . . . . . 20767 GGTCAAACATCTGCTATATCAAGGTCAATCACTGGCTCAGAGCAAGAAGGAGAAGCTAAA G Q T S A I S R S I T G S E Q E G E A K V K H L L Y Q G Q S L A Q S K K E K L K W S N I C Y I K V N H W L R A R R R S - . . . . . . 20827 GATCATATAGATGAAGAAGCTAACCTTGAAGGCTCAGTTTCAGATGGAGAGACAGATGGT D H I D E E A N L E G S V S D G E T D G I I - M K K L T L K A Q F Q M E R Q M V R S Y R - R S - P - R L S F R W R D R W . . . . . . 20887 ATGATTTTTGGAAGCTCTGAAGCTGCCAAACAGTTTATGGAGGAGCTGGAAAGGGAATCT M I F G S S E A A K Q F M E E L E R E S - F L E A L K L P N S L W R S W K G N L Y D F W K L - S C Q T V Y G G A G K G I . . . . . . 20947 GGTGGTGGCTCCTATGCTGGTGCTGAGGTTTCTCAGGATATTGATGGTCAGATTGTCACC G G G S Y A G A E V S Q D I D G Q I V T V V A P M L V L R F L R I L M V R L S P W W W L L C W C - G F S G Y - W S D C H . . . . . . 21007 GACTCAGATGAGGAGGCTGATACTGATGAAGAAGGAGATGTGAAGGAGTTGTTTGATTCA D S D E E A D T D E E G D V K E L F D S T Q M R R L I L M K K E M - R S C L I Q R L R - G G - Y - - R R R C E G V V - F . . . . . . 21067 GCTGCCTTAGCTGCTCTTTTAAAAGCAGCAACAGGTGGTGATTCTGATGGTGGCAACATA A A L A A L L K A A T G G D S D G G N I L P - L L F - K Q Q Q V V I L M V A T - S C L S C S F K S S N R W - F - W W Q H . . . . . . 21127 ACAGTCACGTCTCAAGATGGATCAAGACTGTTCTCTGTTGAACGTCCTGCTGGTCTTGGG T V T S Q D G S R L F S V E R P A G L G Q S R L K M D Q D C S L L N V L L V L G N S H V S R W I K T V L C - T S C W S W . . . . . . 21187 TCATCACTCCGGTCACTGAGGCCAGCTCCCCGACCAAGCCAACCCAATCTTTTTACTCAT S S L R S L R P A P R P S Q P N L F T H H H S G H - G Q L P D Q A N P I F L L I V I T P V T E A S S P T K P T Q S F Y S . . . . . . 21247 TCCAATCTCCAGAACAGTGGAGAATCTGAGAACAACTTGAGTGAAGAAGAGAAGAAGAAA S N L Q N S G E S E N N L S E E E K K K P I S R T V E N L R T T - V K K R R R N F Q S P E Q W R I - E Q L E - R R E E E . . . . . . 21307 CTGGACACACTACAGCAGATCAGGGTCAAGTTTTTGAGGCTTATTCACAGGTTGGGTCTA L D T L Q Q I R V K F L R L I H R L G L W T H Y S R S G S S F - G L F T G W V Y T G H T T A D Q G Q V F E A Y S Q V G S . . . . . . 21367 TCTTCTGATGAGCCCATAGCTGCACAAGTTTTGTACCGGATGACACTTATTGCACGAAGG S S D E P I A A Q V L Y R M T L I A R R L L M S P - L H K F C T G - H L L H E G I F - - A H S C T S F V P D D T Y C T K . . . . . . 21427 CAAAACAGTCCACTTTTTAGCGTTGAGGCTGCCAAGATGAAAGCTTTCCAGCTTGAAGCA Q N S P L F S V E A A K M K A F Q L E A K T V H F L A L R L P R - K L S S L K Q A K Q S T F - R - G C Q D E S F P A - S . . . . . . 21487 GAGGGGAAAGATGATTTGGACTTCTCTGTGAATATCCTGGTTATTGGCAAATCTGGGGTG E G K D D L D F S V N I L V I G K S G V R G K M I W T S L - I S W L L A N L G W R G E R - F G L L C E Y P G Y W Q I W G . . . . . . 21547 GGTAAGAGCGCTACCATAAACTCTATCTTTGGAGAGGAAAAAACATCAATTGATGCCTTT G K S A T I N S I F G E E K T S I D A F V R A L P - T L S L E R K K H Q L M P L G - E R Y H K L Y L W R G K N I N - C L . . . . . . 21607 GGACCTGCTACCACCAGTGTGAAAGAGATCAGTGGTGTTGTAGATGGTGTTAAGATTCGG G P A T T S V K E I S G V V D G V K I R D L L P P V - K R S V V L - M V L R F G W T C Y H Q C E R D Q W C C R W C - D S . . . . . . 21667 GTGTTTGATACACCTGGCCTCAAGTCCTCTGCGATGGAACAGGGTTTCAATCGCAGTGTC V F D T P G L K S S A M E Q G F N R S V C L I H L A S S P L R W N R V S I A V S G V - Y T W P Q V L C D G T G F Q S Q C . . . . . . 21727 TTGTCTTCAGTAAAGAAGTTGACTAAGAAGAATCCCCCTGATATTTACCTCTATGTCGAT L S S V K K L T K K N P P D I Y L Y V D C L Q - R S - L R R I P L I F T S M S I L V F S K E V D - E E S P - Y L P L C R . 21787 CGGTTGGATG R L D G W M S V G Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1+_PGL-4_AGS-1_PPS_1 (20647 21795) (frame '1'; 1149 bp, 383 residues) 1 SLDTKDVEVE PEQAVSGTIY ANGDHSGESV ERDVVEVEVS GQTSAISRSI TGSEQEGEAK 61 DHIDEEANLE GSVSDGETDG MIFGSSEAAK QFMEELERES GGGSYAGAEV SQDIDGQIVT 121 DSDEEADTDE EGDVKELFDS AALAALLKAA TGGDSDGGNI TVTSQDGSRL FSVERPAGLG 181 SSLRSLRPAP RPSQPNLFTH SNLQNSGESE NNLSEEEKKK LDTLQQIRVK FLRLIHRLGL 241 SSDEPIAAQV LYRMTLIARR QNSPLFSVEA AKMKAFQLEA EGKDDLDFSV NILVIGKSGV 301 GKSATINSIF GEEKTSIDAF GPATTSVKEI SGVVDGVKIR VFDTPGLKSS AMEQGFNRSV 361 LSSVKKLTKK NPPDIYLYVD RLD 3-phase translation of AGS-1 (-strand): . . . . . . 21796 CATCCAACCGATCGACATAGAGGTAAATATCAGGGGGATTCTTCTTAGTCAACTTCTTTA H P T D R H R G K Y Q G D S S - S T S L I Q P I D I E V N I R G I L L S Q L L Y S N R S T - R - I S G G F F L V N F F . . . . . . 21736 CTGAAGACAAGACACTGCGATTGAAACCCTGTTCCATCGCAGAGGACTTGAGGCCAGGTG L K T R H C D - N P V P S Q R T - G Q V - R Q D T A I E T L F H R R G L E A R C T E D K T L R L K P C S I A E D L R P G . . . . . . 21676 TATCAAACACCCGAATCTTAACACCATCTACAACACCACTGATCTCTTTCACACTGGTGG Y Q T P E S - H H L Q H H - S L S H W W I K H P N L N T I Y N T T D L F H T G G V S N T R I L T P S T T P L I S F T L V . . . . . . 21616 TAGCAGGTCCAAAGGCATCAATTGATGTTTTTTCCTCTCCAAAGATAGAGTTTATGGTAG - Q V Q R H Q L M F F P L Q R - S L W - S R S K G I N - C F F L S K D R V Y G S V A G P K A S I D V F S S P K I E F M V . . . . . . 21556 CGCTCTTACCCACCCCAGATTTGCCAATAACCAGGATATTCACAGAGAAGTCCAAATCAT R S Y P P Q I C Q - P G Y S Q R S P N H A L T H P R F A N N Q D I H R E V Q I I A L L P T P D L P I T R I F T E K S K S . . . . . . 21496 CTTTCCCCTCTGCTTCAAGCTGGAAAGCTTTCATCTTGGCAGCCTCAACGCTAAAAAGTG L S P L L Q A G K L S S W Q P Q R - K V F P L C F K L E S F H L G S L N A K K W S F P S A S S W K A F I L A A S T L K S . . . . . . 21436 GACTGTTTTGCCTTCGTGCAATAAGTGTCATCCGGTACAAAACTTGTGCAGCTATGGGCT D C F A F V Q - V S S G T K L V Q L W A T V L P S C N K C H P V Q N L C S Y G L G L F C L R A I S V I R Y K T C A A M G . . . . . . 21376 CATCAGAAGATAGACCCAACCTGTGAATAAGCCTCAAAAACTTGACCCTGATCTGCTGTA H Q K I D P T C E - A S K T - P - S A V I R R - T Q P V N K P Q K L D P D L L - S S E D R P N L - I S L K N L T L I C C . . . . . . 21316 GTGTGTCCAGTTTCTTCTTCTCTTCTTCACTCAAGTTGTTCTCAGATTCTCCACTGTTCT V C P V S S S L L H S S C S Q I L H C S C V Q F L L L F F T Q V V L R F S T V L S V S S F F F S S S L K L F S D S P L F . . . . . . 21256 GGAGATTGGAATGAGTAAAAAGATTGGGTTGGCTTGGTCGGGGAGCTGGCCTCAGTGACC G D W N E - K D W V G L V G E L A S V T E I G M S K K I G L A W S G S W P Q - P W R L E - V K R L G W L G R G A G L S D . . . . . . 21196 GGAGTGATGACCCAAGACCAGCAGGACGTTCAACAGAGAACAGTCTTGATCCATCTTGAG G V M T Q D Q Q D V Q Q R T V L I H L E E - - P K T S R T F N R E Q S - S I L R R S D D P R P A G R S T E N S L D P S - . . . . . . 21136 ACGTGACTGTTATGTTGCCACCATCAGAATCACCACCTGTTGCTGCTTTTAAAAGAGCAG T - L L C C H H Q N H H L L L L L K E Q R D C Y V A T I R I T T C C C F - K S S D V T V M L P P S E S P P V A A F K R A . . . . . . 21076 CTAAGGCAGCTGAATCAAACAACTCCTTCACATCTCCTTCTTCATCAGTATCAGCCTCCT L R Q L N Q T T P S H L L L H Q Y Q P P - G S - I K Q L L H I S F F I S I S L L A K A A E S N N S F T S P S S S V S A S . . . . . . 21016 CATCTGAGTCGGTGACAATCTGACCATCAATATCCTGAGAAACCTCAGCACCAGCATAGG H L S R - Q S D H Q Y P E K P Q H Q H R I - V G D N L T I N I L R N L S T S I G S S E S V T I - P S I S - E T S A P A - . . . . . . 20956 AGCCACCACCAGATTCCCTTTCCAGCTCCTCCATAAACTGTTTGGCAGCTTCAGAGCTTC S H H Q I P F P A P P - T V W Q L Q S F A T T R F P F Q L L H K L F G S F R A S E P P P D S L S S S S I N C L A A S E L . . . . . . 20896 CAAAAATCATACCATCTGTCTCTCCATCTGAAACTGAGCCTTCAAGGTTAGCTTCTTCAT Q K S Y H L S L H L K L S L Q G - L L H K N H T I C L S I - N - A F K V S F F I P K I I P S V S P S E T E P S R L A S S . . . . . . 20836 CTATATGATCTTTAGCTTCTCCTTCTTGCTCTGAGCCAGTGATTGACCTTGATATAGCAG L Y D L - L L L L A L S Q - L T L I - Q Y M I F S F S F L L - A S D - P - Y S R S I - S L A S P S C S E P V I D L D I A . . . . . . 20776 ATGTTTGACCAGAGACTTCAACTTCCACTACATCTCGCTCGACGCTTTCTCCGGAATGGT M F D Q R L Q L P L H L A R R F L R N G C L T R D F N F H Y I S L D A F S G M V D V - P E T S T S T T S R S T L S P E W . . . . . . 20716 CACCATTGGCATATATAGTTCCAGACACTGCCTGCTCAGGTTCCACTTCAACATCCTTGG H H W H I - F Q T L P A Q V P L Q H P W T I G I Y S S R H C L L R F H F N I L G S P L A Y I V P D T A C S G S T S T S L . 20656 TGTCCAGACT C P D V Q T V S R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-4_AGS-1_PPS_1 (21770 21351) (frame '0'; 417 bp, 139 residues) 1 ISGGFFLVNF FTEDKTLRLK PCSIAEDLRP GVSNTRILTP STTPLISFTL VVAGPKASID 61 VFSSPKIEFM VALLPTPDLP ITRIFTEKSK SSFPSASSWK AFILAASTLK SGLFCLRAIS 121 VIRYKTCAAM GSSEDRPNL- PGL 5 (+ strand): 22166 23640 AGS-1 (22166 23640) SCR (e 0.997) Exon 1 22166 23640 (1475 n); score: 0.997 PGS (22166 23073) SGN-E553479+ PGS (22272 22704) SGN-E555297+ PGS (22541 22757) SGN-E295259+ PGS (22582 22944) SGN-E213650+ PGS (22585 23130) SGN-E253297+ PGS (22632 23230) SGN-E214340+ PGS (22641 23354) SGN-E316143+ PGS (22641 23265) SGN-E316036+ PGS (23138 23571) SGN-E281062+ PGS (23162 23640) SGN-E321451- 3-phase translation of AGS-1 (+strand): . . . . . . 22166 CAAGTGCACTTTCAAAGCCTGAAGATCCATTTGATCACCGTAAGCTCTTTGGTTTCCGCA Q V H F Q S L K I H L I T V S S L V S A K C T F K A - R S I - S P - A L W F P H S A L S K P E D P F D H R K L F G F R . . . . . . 22226 CACGCTCACCACCTCTTCCCTACATGCTTTCTTCAATGTTGCAGTCACGTGCGCATCCAA H A H H L F P T C F L Q C C S H V R I Q T L T T S S L H A F F N V A V T C A S K T R S P P L P Y M L S S M L Q S R A H P . . . . . . 22286 AGCTTTCTGCTGAGCAGGGTGGTGACAACGGTGATTCAGACATTGACTTAGATGATTTGT S F L L S R V V T T V I Q T L T - M I C A F C - A G W - Q R - F R H - L R - F V K L S A E Q G G D N G D S D I D L D D L . . . . . . 22346 CAGACTCTGACCAAGAAGAAGAAGATGAGTATGACCAGCTTCCTCCCTTCAAGCCTCTTC Q T L T K K K K M S M T S F L P S S L F R L - P R R R R - V - P A S S L Q A S S S D S D Q E E E D E Y D Q L P P F K P L . . . . . . 22406 GGAAGGCTCAGCTTGCTAAGCTCAGCAAAGAACAGAGGAAGGCGTACTTTGAGGAGTATG G R L S L L S S A K N R G R R T L R S M E G S A C - A Q Q R T E E G V L - G V - R K A Q L A K L S K E Q R K A Y F E E Y . . . . . . 22466 ACTACAGGGTCAAGCTCCTTCAGAAGAAACAGTTGAGAGAAGATTTAAAAAGAATGAAAG T T G S S S F R R N S - E K I - K E - K L Q G Q A P S E E T V E R R F K K N E R D Y R V K L L Q K K Q L R E D L K R M K . . . . . . 22526 AGATGAAAAGTAAGGGAAAAGAGGCTGCAATTGACAATGGTTATGCAGAGGAAGAAGCTG R - K V R E K R L Q L T M V M Q R K K L D E K - G K R G C N - Q W L C R G R S - E M K S K G K E A A I D N G Y A E E E A . . . . . . 22586 ATGCAGGTGCAGCAGCTCCCGTAGCAGTTCCCCTTCCTGACATGGCCCTTCCACCTTCTT M Q V Q Q L P - Q F P F L T W P F H L L C R C S S S R S S S P S - H G P S T F F D A G A A A P V A V P L P D M A L P P S . . . . . . 22646 TTGATAGTGATAATCCCGCCTATAGGTACCGCTTCTTGGAGCCCACATCACAGTTCCTTG L I V I I P P I G T A S W S P H H S S L - - - - S R L - V P L L G A H I T V P C F D S D N P A Y R Y R F L E P T S Q F L . . . . . . 22706 CAAGGCCTGTTCTGGACACGCATGGTTGGGATCATGATTGTGGCTATGATGGTGTTAACG Q G L F W T R M V G I M I V A M M V L T K A C S G H A W L G S - L W L - W C - R A R P V L D T H G W D H D C G Y D G V N . . . . . . 22766 TGGAACAAAGTTTAGCCATTGCCAGTCGTTTCCCTGCTGCAGTTACTGTGCAAATCACCA W N K V - P L P V V S L L Q L L C K S P G T K F S H C Q S F P C C S Y C A N H Q V E Q S L A I A S R F P A A V T V Q I T . . . . . . 22826 AAGATAAGAAGGATTTCAGTATCAATTTGGACTCTTCGATTGCTGCTAAGCACGGAGAAA K I R R I S V S I W T L R L L L S T E K R - E G F Q Y Q F G L F D C C - A R R K K D K K D F S I N L D S S I A A K H G E . . . . . . 22886 ATGGATCAACCATGGCTGGCTTTGATATTCAAAGCATAGGGAAGCAACTTGCCTATATTG M D Q P W L A L I F K A - G S N L P I L W I N H G W L - Y S K H R E A T C L Y C N G S T M A G F D I Q S I G K Q L A Y I . . . . . . 22946 TCCGAGGAGAAACCAAATTCAAAAGCTTGAAGAAGAACAAGACTGCTTGCGGAATTTCTG S E E K P N S K A - R R T R L L A E F L P R R N Q I Q K L E E E Q D C L R N F C V R G E T K F K S L K K N K T A C G I S . . . . . . 23006 TTACATTTCTAGGTGAAAATATGGTCACTGGACTTAAAGTTGAAGATCAAATCATCTTAG L H F - V K I W S L D L K L K I K S S - Y I S R - K Y G H W T - S - R S N H L R V T F L G E N M V T G L K V E D Q I I L . . . . . . 23066 GCAAGCAATACGTTCTAGTTGGCAGTGCTGGCACTGTTCGATCTCAGAGTGACACAGCTT A S N T F - L A V L A L F D L R V T Q L Q A I R S S W Q C W H C S I S E - H S L G K Q Y V L V G S A G T V R S Q S D T A . . . . . . 23126 ATGGGGCTAACTTTGAACTGCAGAGGAGGGAGGCAGATTTCCCAATCGGTCAGGTGCAAT M G L T L N C R G G R Q I S Q S V R C N W G - L - T A E E G G R F P N R S G A I Y G A N F E L Q R R E A D F P I G Q V Q . . . . . . 23186 CTACATTGTCTATGTCCGTCATAAAGTGGAGAGGTGATTTGGCTCTAGGTTTCAACAGTA L H C L C P S - S G E V I W L - V S T V Y I V Y V R H K V E R - F G S R F Q Q Y S T L S M S V I K W R G D L A L G F N S . . . . . . 23246 TGGCGCAATTCGCTGTGGGACGCAATTCGAAGGTAGCTGTTCGAGCAGGAATCAATAACA W R N S L W D A I R R - L F E Q E S I T G A I R C G T Q F E G S C S S R N Q - Q M A Q F A V G R N S K V A V R A G I N N . . . . . . 23306 AGCTCAGTGGGCAAGTAACCGTGAGGACAAGCAGTTCAGACCATCTCTCTCTTGCACTTA S S V G K - P - G Q A V Q T I S L L H L A Q W A S N R E D K Q F R P S L S C T Y K L S G Q V T V R T S S S D H L S L A L . . . . . . 23366 CTGCTATTATTCCAACTGCAATTGGCATCTACAGGAAGCTTTGGCCGGATGCTGGCGAGA L L L F Q L Q L A S T G S F G R M L A R C Y Y S N C N W H L Q E A L A G C W R E T A I I P T A I G I Y R K L W P D A G E . . . . . . 23426 AGTACTCAATCTACTAAATTTCATTTCCATATCAGCATTGCATTTTTGGTTCATTAGACC S T Q S T K F H F H I S I A F L V H - T V L N L L N F I S I S A L H F W F I R P K Y S I Y - I S F P Y Q H C I F G S L D . . . . . . 23486 TTACATGATGACATATTGTCTTTGTCAGTTCATTGAATAATGCTTCTGTTAATTTCCCAT L H D D I L S L S V H - I M L L L I S H Y M M T Y C L C Q F I E - C F C - F P I L T - - H I V F V S S L N N A S V N F P . . . . . . 23546 CTATTTAGGATTCCTACTGTTATGAGTTATAAGTCAATTTTGAGTGATTGAATGTACTTT L F R I P T V M S Y K S I L S D - M Y F Y L G F L L L - V I S Q F - V I E C T F S I - D S Y C Y E L - V N F E - L N V L . . . . 23606 TTTGCCAGATGAAATGAAGAGGTTTGTGTTGCTTT F A R - N E E V C V A L P D E M K R F V L L F C Q M K - R G L C C F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1+_PGL-5_AGS-1_PPS_1 (22168 23442) (frame '0'; 1272 bp, 424 residues) 1 SALSKPEDPF DHRKLFGFRT RSPPLPYMLS SMLQSRAHPK LSAEQGGDNG DSDIDLDDLS 61 DSDQEEEDEY DQLPPFKPLR KAQLAKLSKE QRKAYFEEYD YRVKLLQKKQ LREDLKRMKE 121 MKSKGKEAAI DNGYAEEEAD AGAAAPVAVP LPDMALPPSF DSDNPAYRYR FLEPTSQFLA 181 RPVLDTHGWD HDCGYDGVNV EQSLAIASRF PAAVTVQITK DKKDFSINLD SSIAAKHGEN 241 GSTMAGFDIQ SIGKQLAYIV RGETKFKSLK KNKTACGISV TFLGENMVTG LKVEDQIILG 301 KQYVLVGSAG TVRSQSDTAY GANFELQRRE ADFPIGQVQS TLSMSVIKWR GDLALGFNSM 361 AQFAVGRNSK VAVRAGINNK LSGQVTVRTS SSDHLSLALT AIIPTAIGIY RKLWPDAGEK 421 YSIY- 3-phase translation of AGS-1 (-strand): . . . . . . 23640 AAAGCAACACAAACCTCTTCATTTCATCTGGCAAAAAAGTACATTCAATCACTCAAAATT K A T Q T S S F H L A K K Y I Q S L K I K Q H K P L H F I W Q K S T F N H S K L S N T N L F I S S G K K V H S I T Q N . . . . . . 23580 GACTTATAACTCATAACAGTAGGAATCCTAAATAGATGGGAAATTAACAGAAGCATTATT D L - L I T V G I L N R W E I N R S I I T Y N S - Q - E S - I D G K L T E A L F - L I T H N S R N P K - M G N - Q K H Y . . . . . . 23520 CAATGAACTGACAAAGACAATATGTCATCATGTAAGGTCTAATGAACCAAAAATGCAATG Q - T D K D N M S S C K V - - T K N A M N E L T K T I C H H V R S N E P K M Q C S M N - Q R Q Y V I M - G L M N Q K C N . . . . . . 23460 CTGATATGGAAATGAAATTTAGTAGATTGAGTACTTCTCGCCAGCATCCGGCCAAAGCTT L I W K - N L V D - V L L A S I R P K L - Y G N E I - - I E Y F S P A S G Q S F A D M E M K F S R L S T S R Q H P A K A . . . . . . 23400 CCTGTAGATGCCAATTGCAGTTGGAATAATAGCAGTAAGTGCAAGAGAGAGATGGTCTGA P V D A N C S W N N S S K C K R E M V - L - M P I A V G I I A V S A R E R W S E S C R C Q L Q L E - - Q - V Q E R D G L . . . . . . 23340 ACTGCTTGTCCTCACGGTTACTTGCCCACTGAGCTTGTTATTGATTCCTGCTCGAACAGC T A C P H G Y L P T E L V I D S C S N S L L V L T V T C P L S L L L I P A R T A N C L S S R L L A H - A C Y - F L L E Q . . . . . . 23280 TACCTTCGAATTGCGTCCCACAGCGAATTGCGCCATACTGTTGAAACCTAGAGCCAAATC Y L R I A S H S E L R H T V E T - S Q I T F E L R P T A N C A I L L K P R A K S L P S N C V P Q R I A P Y C - N L E P N . . . . . . 23220 ACCTCTCCACTTTATGACGGACATAGACAATGTAGATTGCACCTGACCGATTGGGAAATC T S P L Y D G H R Q C R L H L T D W E I P L H F M T D I D N V D C T - P I G K S H L S T L - R T - T M - I A P D R L G N . . . . . . 23160 TGCCTCCCTCCTCTGCAGTTCAAAGTTAGCCCCATAAGCTGTGTCACTCTGAGATCGAAC C L P P L Q F K V S P I S C V T L R S N A S L L C S S K L A P - A V S L - D R T L P P S S A V Q S - P H K L C H S E I E . . . . . . 23100 AGTGCCAGCACTGCCAACTAGAACGTATTGCTTGCCTAAGATGATTTGATCTTCAACTTT S A S T A N - N V L L A - D D L I F N F V P A L P T R T Y C L P K M I - S S T L Q C Q H C Q L E R I A C L R - F D L Q L . . . . . . 23040 AAGTCCAGTGACCATATTTTCACCTAGAAATGTAACAGAAATTCCGCAAGCAGTCTTGTT K S S D H I F T - K C N R N S A S S L V S P V T I F S P R N V T E I P Q A V L F - V Q - P Y F H L E M - Q K F R K Q S C . . . . . . 22980 CTTCTTCAAGCTTTTGAATTTGGTTTCTCCTCGGACAATATAGGCAAGTTGCTTCCCTAT L L Q A F E F G F S S D N I G K L L P Y F F K L L N L V S P R T I - A S C F P M S S S S F - I W F L L G Q Y R Q V A S L . . . . . . 22920 GCTTTGAATATCAAAGCCAGCCATGGTTGATCCATTTTCTCCGTGCTTAGCAGCAATCGA A L N I K A S H G - S I F S V L S S N R L - I S K P A M V D P F S P C L A A I E C F E Y Q S Q P W L I H F L R A - Q Q S . . . . . . 22860 AGAGTCCAAATTGATACTGAAATCCTTCTTATCTTTGGTGATTTGCACAGTAACTGCAGC R V Q I D T E I L L I F G D L H S N C S E S K L I L K S F L S L V I C T V T A A K S P N - Y - N P S Y L W - F A Q - L Q . . . . . . 22800 AGGGAAACGACTGGCAATGGCTAAACTTTGTTCCACGTTAACACCATCATAGCCACAATC R E T T G N G - T L F H V N T I I A T I G K R L A M A K L C S T L T P S - P Q S Q G N D W Q W L N F V P R - H H H S H N . . . . . . 22740 ATGATCCCAACCATGCGTGTCCAGAACAGGCCTTGCAAGGAACTGTGATGTGGGCTCCAA M I P T M R V Q N R P C K E L - C G L Q - S Q P C V S R T G L A R N C D V G S K H D P N H A C P E Q A L Q G T V M W A P . . . . . . 22680 GAAGCGGTACCTATAGGCGGGATTATCACTATCAAAAGAAGGTGGAAGGGCCATGTCAGG E A V P I G G I I T I K R R W K G H V R K R Y L - A G L S L S K E G G R A M S G R S G T Y R R D Y H Y Q K K V E G P C Q . . . . . . 22620 AAGGGGAACTGCTACGGGAGCTGCTGCACCTGCATCAGCTTCTTCCTCTGCATAACCATT K G N C Y G S C C T C I S F F L C I T I R G T A T G A A A P A S A S S S A - P L E G E L L R E L L H L H Q L L P L H N H . . . . . . 22560 GTCAATTGCAGCCTCTTTTCCCTTACTTTTCATCTCTTTCATTCTTTTTAAATCTTCTCT V N C S L F S L T F H L F H S F - I F S S I A A S F P L L F I S F I L F K S S L C Q L Q P L F P Y F S S L S F F L N L L . . . . . . 22500 CAACTGTTTCTTCTGAAGGAGCTTGACCCTGTAGTCATACTCCTCAAAGTACGCCTTCCT Q L F L L K E L D P V V I L L K V R L P N C F F - R S L T L - S Y S S K Y A F L S T V S S E G A - P C S H T P Q S T P S . . . . . . 22440 CTGTTCTTTGCTGAGCTTAGCAAGCTGAGCCTTCCGAAGAGGCTTGAAGGGAGGAAGCTG L F F A E L S K L S L P K R L E G R K L C S L L S L A S - A F R R G L K G G S W S V L C - A - Q A E P S E E A - R E E A . . . . . . 22380 GTCATACTCATCTTCTTCTTCTTGGTCAGAGTCTGACAAATCATCTAAGTCAATGTCTGA V I L I F F F L V R V - Q I I - V N V - S Y S S S S S W S E S D K S S K S M S E G H T H L L L L G Q S L T N H L S Q C L . . . . . . 22320 ATCACCGTTGTCACCACCCTGCTCAGCAGAAAGCTTTGGATGCGCACGTGACTGCAACAT I T V V T T L L S R K L W M R T - L Q H S P L S P P C S A E S F G C A R D C N I N H R C H H P A Q Q K A L D A H V T A T . . . . . . 22260 TGAAGAAAGCATGTAGGGAAGAGGTGGTGAGCGTGTGCGGAAACCAAAGAGCTTACGGTG - R K H V G K R W - A C A E T K E L T V E E S M - G R G G E R V R K P K S L R - L K K A C R E E V V S V C G N Q R A Y G . . . . 22200 ATCAAATGGATCTTCAGGCTTTGAAAGTGCACTTG I K W I F R L - K C T S N G S S G F E S A L D Q M D L Q A L K V H L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-5_AGS-1_PPS_1 (22759 22475) (frame '0'; 282 bp, 94 residues) 1 HHHSHNHDPN HACPEQALQG TVMWAPRSGT YRRDYHYQKK VEGPCQEGEL LRELLHLHQL 61 LPLHNHCQLQ PLFPYFSSLS FFLNLLSTVS SEGA- >C09HBa0099P03.1-1-_PGL-5_AGS-1_PPS_2 (22393 22166) (frame '0'; 228 bp, 76 residues) 1 REEAGHTHLL LLGQSLTNHL SQCLNHRCHH PAQQKALDAH VTATLKKACR EEVVSVCGNQ 61 RAYGDQMDLQ ALKVHL >C09HBa0099P03.1-1-_PGL-5_AGS-1_PPS_3 (23393 23175) (frame '2'; 216 bp, 72 residues) 1 MPIAVGIIAV SARERWSELL VLTVTCPLSL LLIPARTATF ELRPTANCAI LLKPRAKSPL 61 HFMTDIDNVD CT- PGL 6 (+ strand): 24880 28976 AGS-1 (24880 24904,28814 28976) SCR (e 0.800 d 0.996 a 0.000,e 0.847) Exon 1 24880 24904 ( 25 n); score: 0.800 Intron 1 24905 28813 (3909 n); Pd: 0.996 Pa: 0.000 Exon 2 28814 28976 ( 163 n); score: 0.847 PGS (24880 24904,28814 28976) SGN-E318957+ 3-phase translation of AGS-1 (+strand): . . . : . . . 24880 TCTTGCCATATATACAAATACATAG : TTATTTCATATTTTCTCCGTTTAAAAAAGAATGAA S C H I Y K Y I : V I S Y F L R L K K N E L A I Y T N T - : L F H I F S V - K R M N L P Y I Q I H S : Y F I F S P F K K E - . . . . . . 28849 CTAGTTTGACTTGGAATGAAGTTTAAGAAAAGAAAGAAGACTTTTTAATCTTGTGGTTCT L V - L G M K F K K R K K T F - S C G S - F D L E - S L R K E R R L F N L V V L T S L T W N E V - E K K E D F L I L W F . . . . . . 28909 AAATTAAAGTTATGTCAAATGTATCAAAATGTTCTTAAATCTTGTGGTCTTAAACATGTC K L K L C Q M Y Q N V L K S C G L K H V N - S Y V K C I K M F L N L V V L N M S - I K V M S N V S K C S - I L W S - T C . 28969 ACGTGAAA T - R E H V K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (- strand): 27107 25812 AGS-1 (27107 26940,26505 26281,26017 25812) SCR (e 1.000 d 1.000 a 0.996,e 1.000 d 0.994 a 0.958,e 1.000) Exon 1 27107 26940 ( 168 n); score: 1.000 Intron 1 26939 26506 ( 434 n); Pd: 1.000 Pa: 0.996 Exon 2 26505 26281 ( 225 n); score: 1.000 Intron 2 26280 26018 ( 263 n); Pd: 0.994 Pa: 0.958 Exon 3 26017 25812 ( 206 n); score: 1.000 PGS (27105 26940,26505 26281,26017 25812) SGN-E333037+ PGS (27107 26940,26505 26281,26017 25860) SGN-E312737+ 3-phase translation of AGS-1 (-strand): . . . . . . 27107 ACTTAGTTTTTCTCCATCTCTACCATGGCTGACGCAGCTGCAACGCCGCCTACTGATCCA T - F F S I S T M A D A A A T P P T D P L S F S P S L P W L T Q L Q R R L L I Q L V F L H L Y H G - R S C N A A Y - S . . . . . . 27047 GCAAGCACGGCGCCACCTGCTACGACTGATCCAGCAAGCACGACGCCGCCTGCTAGTACT A S T A P P A T T D P A S T T P P A S T Q A R R H L L R L I Q Q A R R R L L V L S K H G A T C Y D - S S K H D A A C - Y . . . . . : . 26987 GATCCAGCAAACACGACGCCGCCTACTAGTACTGATCCAGCTGATCCA : GTAGCAGAAGAT D P A N T T P P T S T D P A D P : V A E D I Q Q T R R R L L V L I Q L I Q : - Q K M - S S K H D A A Y - Y - S S - S : S S R R . . . . . . 26493 GAGAGGAAACTTAAATATCTGGATTTCGTTCAAGTTGCAGCGATCTATGTGATTGTTTGC E R K L K Y L D F V Q V A A I Y V I V C R G N L N I W I S F K L Q R S M - L F A - E E T - I S G F R S S C S D L C D C L . . . . . . 26433 TTCTCAACTTTGTATGAATACGGCAAAGAAAACTCCGGTCCGTTGAAACCTGGTGTACAG F S T L Y E Y G K E N S G P L K P G V Q S Q L C M N T A K K T P V R - N L V Y R L L N F V - I R Q R K L R S V E T W C T . . . . . . 26373 GCCGTAGAAGCCACTGTTAAAACTGTTATCGGACCGGTTTATGAGAAGTTCCATAACGTT A V E A T V K T V I G P V Y E K F H N V P - K P L L K L L S D R F M R S S I T F G R R S H C - N C Y R T G L - E V P - R . . . . : . . 26313 CCTTTCAATCTCCTCAAGTTCATCGACCTAAAG : GTTGCAGACTTGATGACAGAAGTTGAA P F N L L K F I D L K : V A D L M T E V E L S I S S S S S T - R : L Q T - - Q K L K S F Q S P Q V H R P K : G C R L D D R S - . . . . . . 25990 AGCCATGTGCCTTCTCTACTAAAGCAGACATCATCTAAAGCTCTGTTAATAGCTCAGAAG S H V P S L L K Q T S S K A L L I A Q K A M C L L Y - S R H H L K L C - - L R R K P C A F S T K A D I I - S S V N S S E . . . . . . 25930 GCTCCAGAATTAGCTCGAGATCTCGCCGGCGAGGTACAGCACGATGGCTTAGTGGACACA A P E L A R D L A G E V Q H D G L V D T L Q N - L E I S P A R Y S T M A - W T Q G S R I S S R S R R R G T A R W L S G H . . . . . . 25870 GCGAGCAACGTAGCTAAAACACTCTACACAAAGTACGAACCCACAGTCAAGGAGCTATA A S N V A K T L Y T K Y E P T V K E L R A T - L K H S T Q S T N P Q S R S Y S E Q R S - N T L H K V R T H S Q G A I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-7_AGS-1_PPS_1 (27101 26940,26505 26281,26017 25814) (frame '1'; 591 bp, 197 residues) 1 FFSISTMADA AATPPTDPAS TAPPATTDPA STTPPASTDP ANTTPPTSTD PADPVAEDER 61 KLKYLDFVQV AAIYVIVCFS TLYEYGKENS GPLKPGVQAV EATVKTVIGP VYEKFHNVPF 121 NLLKFIDLKV ADLMTEVESH VPSLLKQTSS KALLIAQKAP ELARDLAGEV QHDGLVDTAS 181 NVAKTLYTKY EPTVKEL PGL 8 (- strand): 28940 28823 AGS-1 (28940 28823) SCR (e 0.907) Exon 1 28940 28823 ( 118 n); score: 0.907 PGS (28940 28823) SGN-E376578+ PGS (28940 28823) SGN-E393272+ PGS (28940 28823) SGN-E210228+ 3-phase translation of AGS-1 (-strand): . . . . . . 28940 ACATTTTGATACATTTGACATAACTTTAATTTAGAACCACAAGATTAAAAAGTCTTCTTT T F - Y I - H N F N L E P Q D - K V F F H F D T F D I T L I - N H K I K K S S F I L I H L T - L - F R T T R L K S L L . . . . . . 28880 CTTTTCTTAAACTTCATTCCAAGTCAAACTAGTTCATTCTTTTTTAAACGGAGAAAAT L F L N F I P S Q T S S F F F K R R K F S - T S F Q V K L V H S F L N G E N S F L K L H S K S N - F I L F - T E K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 28823 ATTTTCTCCGTTTAAAAAAGAATGAACTAGTTTGACTTGGAATGAAGTTTAAGAAAAGAA I F S V - K R M N - F D L E - S L R K E F S P F K K E - T S L T W N E V - E K K F L R L K K N E L V - L G M K F K K R . . . . . . 28883 AGAAGACTTTTTAATCTTGTGGTTCTAAATTAAAGTTATGTCAAATGTATCAAAATGT R R L F N L V V L N - S Y V K C I K M E D F L I L W F - I K V M S N V S K C K K T F - S C G S K L K L C Q M Y Q N Maximal non-overlapping open reading frames (>= 64 codons): none PGL 9 (- strand): 36019 31290 AGS-1 (36019 35709,34440 34434,33877 33852,31311 31290) SCR (e 0.849 d 0.000 a 0.992,e 0.571 d 0.517 a 0.000,e 0.577 d 0.456 a 0.987,e 0.773) Exon 1 36019 35709 ( 311 n); score: 0.849 Intron 1 35708 34441 (1268 n); Pd: 0.000 Pa: 0.992 Exon 2 34440 34434 ( 7 n); score: 0.571 Intron 2 34433 33878 ( 556 n); Pd: 0.517 Pa: 0.000 Exon 3 33877 33852 ( 26 n); score: 0.577 Intron 3 33851 31312 (2540 n); Pd: 0.456 Pa: 0.987 Exon 4 31311 31290 ( 22 n); score: 0.773 PGS (36019 35709,34440 34434,33877 33852,31311 31290) SGN-E540411+ PGS (36019 35717) SGN-E540411- 3-phase translation of AGS-1 (-strand): . . . . . . 36019 GAAAATGCACAAGTACCCCCTCAACCTATGTCTGAAATCTCAGAGACACACTTATACTAT E N A Q V P P Q P M S E I S E T H L Y Y K M H K Y P L N L C L K S Q R H T Y T I K C T S T P S T Y V - N L R D T L I L . . . . . . 35959 ACCAAGGTCCCATGACCCCCCTGAACTTATTTTATAAGTAATTTTCTACACTTTTTTGGC T K V P - P P - T Y F I S N F L H F F G P R S H D P P E L I L - V I F Y T F L A Y Q G P M T P L N L F Y K - F S T L F W . . . . . . 35899 CTACGTGGCACTAGCTTGAAAAAAAAATAACCAGCGTTGGGCCCACAAAATAGTGTCACG L R G T S L K K K - P A L G P Q N S V T Y V A L A - K K N N Q R W A H K I V S R P T W H - L E K K I T S V G P T K - C H . . . . . . 35839 TAAGCCGAAAAGGGGTAGAAAATTATTAATAAAATAAGTTCAGGGGATAATAGGACCTTA - A E K G - K I I N K I S S G D N R T L K P K R G R K L L I K - V Q G I I G P - V S R K G V E N Y - - N K F R G - - D L . . . . . . 35779 GTATAGTACAAGTTTGTTTCTGAAATTTCGGGCATAGGTTGAGGGGTACTTGTGCATTAT V - Y K F V S E I S G I G - G V L V H Y Y S T S L F L K F R A - V E G Y L C I I S I V Q V C F - N F G H R L R G T C A L . . : : . . . : . 35719 CCCTAAAAAAA : GTTATGG : CTCTATCATATTTTGTTAAACAACAT : GTGAGTAAGCCAACAG P - K K : L W : L Y H I L L N N M : - V S Q Q P K K : S Y G : S I I F C - T T : C E - A N S S L K K : V M : A L S Y F V K Q H : V S K P T . 31295 CTACAA L Q Y A T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 10 (- strand): 42052 41544 AGS-1 (42052 41544) SCR (e 1.000) Exon 1 42052 41544 ( 509 n); score: 1.000 PGS (41995 41544) SGN-E290510- PGS (42052 41552) SGN-E207956- 3-phase translation of AGS-1 (-strand): . . . . . . 42052 ATTCGGATCAAGTTACCAGTACGTTTCAATGGAGAAGCCTTTCTGGTTTCCGCGTCTATG I R I K L P V R F N G E A F L V S A S M F G S S Y Q Y V S M E K P F W F P R L W S D Q V T S T F Q W R S L S G F R V Y . . . . . . 41992 GGCTTTACATTTAGCCTGTTTAGGTTCTTCTCTTCTAATGGGTCTTTCTGCTTGGCTTGT G F T F S L F R F F S S N G S F C L A C A L H L A C L G S S L L M G L S A W L V G L Y I - P V - V L L F - W V F L L G L . . . . . . 41932 TTGGGCTGAAGGTGGGTTTCATCGTCAACCTATGGCTATAATTTTGTATTTAGCTCAATT L G - R W V S S S T Y G Y N F V F S S I W A E G G F H R Q P M A I I L Y L A Q L F G L K V G F I V N L W L - F C I - L N . . . . . . 41872 AGGGTTGAGTTTGGCTTGGGATCCAGTTGTGTTCAAAGCAGGTGCTACTAGAATTGGGTT R V E F G L G S S C V Q S R C Y - N W V G L S L A W D P V V F K A G A T R I G L - G - V W L G I Q L C S K Q V L L E L G . . . . . . 41812 AGTGTTATGTGTGGCTTTGTTTGGAGTGTTGATTGGTTGTTTTAGGGCTTTTAAAAATGT S V M C G F V W S V D W L F - G F - K C V L C V A L F G V L I G C F R A F K N V - C Y V W L C L E C - L V V L G L L K M . . . . . . 41752 GAATCCTATTGCTGGGGATTTGGTTAAACCTTGTTTTGGATGGGCTGTGCTTTTGAGTTT E S Y C W G F G - T L F W M G C A F E F N P I A G D L V K P C F G W A V L L S L - I L L L G I W L N L V L D G L C F - V . . . . . . 41692 AGCAAATCTTAAGCTTGTGTATCATTAGGAAGAAATAAATAATATGCACTTGTTTTTTGT S K S - A C V S L G R N K - Y A L V F C A N L K L V Y H - E E I N N M H L F F V - Q I L S L C I I R K K - I I C T C F L . . . . . . 41632 TTTGTTTTGGCTTGTGAGGCTTATGTACTGTAAATTTACATGTTCTATATTTATGTTTTA F V L A C E A Y V L - I Y M F Y I Y V L L F W L V R L M Y C K F T C S I F M F - F C F G L - G L C T V N L H V L Y L C F . . . 41572 ATTAAATTAAATTTACATGTGTGTTCTAT I K L N L H V C S L N - I Y M C V L N - I K F T C V F Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1-_PGL-10_AGS-1_PPS_1 (42051 41665) (frame '2'; 384 bp, 128 residues) 1 FGSSYQYVSM EKPFWFPRLW ALHLACLGSS LLMGLSAWLV WAEGGFHRQP MAIILYLAQL 61 GLSLAWDPVV FKAGATRIGL VLCVALFGVL IGCFRAFKNV NPIAGDLVKP CFGWAVLLSL 121 ANLKLVYH- 3-phase translation of AGS-1 (+strand): . . . . . . 41544 ATAGAACACACATGTAAATTTAATTTAATTAAAACATAAATATAGAACATGTAAATTTAC I E H T C K F N L I K T - I - N M - I Y - N T H V N L I - L K H K Y R T C K F T R T H M - I - F N - N I N I E H V N L . . . . . . 41604 AGTACATAAGCCTCACAAGCCAAAACAAAACAAAAAACAAGTGCATATTATTTATTTCTT S T - A S Q A K T K Q K T S A Y Y L F L V H K P H K P K Q N K K Q V H I I Y F F Q Y I S L T S Q N K T K N K C I L F I S . . . . . . 41664 CCTAATGATACACAAGCTTAAGATTTGCTAAACTCAAAAGCACAGCCCATCCAAAACAAG P N D T Q A - D L L N S K A Q P I Q N K L M I H K L K I C - T Q K H S P S K T R S - - Y T S L R F A K L K S T A H P K Q . . . . . . 41724 GTTTAACCAAATCCCCAGCAATAGGATTCACATTTTTAAAAGCCCTAAAACAACCAATCA V - P N P Q Q - D S H F - K P - N N Q S F N Q I P S N R I H I F K S P K T T N Q G L T K S P A I G F T F L K A L K Q P I . . . . . . 41784 ACACTCCAAACAAAGCCACACATAACACTAACCCAATTCTAGTAGCACCTGCTTTGAACA T L Q T K P H I T L T Q F - - H L L - T H S K Q S H T - H - P N S S S T C F E H N T P N K A T H N T N P I L V A P A L N . . . . . . 41844 CAACTGGATCCCAAGCCAAACTCAACCCTAATTGAGCTAAATACAAAATTATAGCCATAG Q L D P K P N S T L I E L N T K L - P - N W I P S Q T Q P - L S - I Q N Y S H R T T G S Q A K L N P N - A K Y K I I A I . . . . . . 41904 GTTGACGATGAAACCCACCTTCAGCCCAAACAAGCCAAGCAGAAAGACCCATTAGAAGAG V D D E T H L Q P K Q A K Q K D P L E E L T M K P T F S P N K P S R K T H - K R G - R - N P P S A Q T S Q A E R P I R R . . . . . . 41964 AAGAACCTAAACAGGCTAAATGTAAAGCCCATAGACGCGGAAACCAGAAAGGCTTCTCCA K N L N R L N V K P I D A E T R K A S P R T - T G - M - S P - T R K P E R L L H E E P K Q A K C K A H R R G N Q K G F S . . . 42024 TTGAAACGTACTGGTAACTTGATCCGAAT L K R T G N L I R - N V L V T - S E I E T Y W - L D P N Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-1+_PGL-10_AGS-1_PPS_1 (41672 41878) (frame '0'; 204 bp, 68 residues) 1 YTSLRFAKLK STAHPKQGLT KSPAIGFTFL KALKQPINTP NKATHNTNPI LVAPALNTTG 61 SQAKLNPN- ... finished at: Tue Aug 29 01:08:35 2006 ________________________________________________________________________________ Sequence 2: C09HBa0099P03.1-2, from 1 to 80423, both strands analyzed. ... started at: Tue Aug 29 01:08:35 2006 EST library file: /tmp/cxgn-bacpublish-resources-Lw6Hn9/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 8 ... matches indexed, elapsed seconds = 8 HitsTableSize = 64 EST library file: /tmp/cxgn-bacpublish-resources-Lw6Hn9/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 8 ... matches indexed, elapsed seconds = 8 HitsTableSize = 46 ******************************************************************************** EST sequence 39 +strand 640 n (File: SGN-E333474+) 1 CGAGATCGTC AGTTCTCCTG CTCCGGCAGC CATGGCCGCC AAAGCAGCTG CTATACGCAA 61 GAGTAATAGA TCGGAGAATT TCATTCAAAA ACTCGTTAAA AATCCTAAAA TACCTTTTGC 121 TATTGCAATA CTCATTGCTG ATGCCATCCT CGTTGCGTTG ATTATCGCTT ACGTTCCATA 181 TACGAAAATT GATTGGGATG CTTATATGTC TCAGGTTACT GGTTTTCTCG AAGGAGAGAG 241 GGATTATAGT AACTTGAAAG GTGACACGGG GCCTCTAGTT TACCCAGCAG GCTTTCTTTA 301 TATTTACTCT GCTATACAAT ATGTTACTGG AGGTCAAGTC TATCCTGCTC AGATTCTTTT 361 TGGCTTTCTC TACGTGCTGG ATCTTGCAAT TGTCTTGTTC ATCTACTTGA AGACTGATGT 421 GGTACCTTGG TGGGCTCTCT CCTTGCTTTC TCTGTCGAAA AGAGTTCACT CTATCTTTGT 481 TCTTCGATTA TTTAATGATT GTTTTGCCAC TACTCTCCTC CATGCTGCAT TGGTCTCAAT 541 TATCTGCCAA AAATGGCATC TAGGGTTGGT AATTTTCAGC GGAGCTGTTT CCATAAAGAT 601 GAATGTGCTC CTGTATGCAC CACCTCTGTT GCTCCTCATG Predicted gene structure (within gDNA segment 3307 to 7410): Exon 1 3907 4085 ( 179 n); cDNA 1 179 ( 179 n); score: 1.000 Intron 1 4086 4190 ( 105 n); Pd: 1.000 (s: 1.00), Pa: 0.871 (s: 0) Exon 2 4191 4225 ( 35 n); cDNA 180 214 ( 35 n); score: 1.000 Intron 2 4226 4432 ( 207 n); Pd: 0.972 (s: 0), Pa: 1.000 (s: 1.00) Exon 3 4433 4570 ( 138 n); cDNA 215 352 ( 138 n); score: 1.000 Intron 3 4571 5379 ( 809 n); Pd: 0.998 (s: 1.00), Pa: 0.439 (s: 1.00) Exon 4 5380 5448 ( 69 n); cDNA 353 421 ( 69 n); score: 1.000 Intron 4 5449 6472 (1024 n); Pd: 0.843 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 5 6473 6630 ( 158 n); cDNA 422 579 ( 158 n); score: 1.000 Intron 5 6631 6739 ( 109 n); Pd: 0.987 (s: 1.00), Pa: 0.805 (s: 1.00) Exon 6 6740 6800 ( 61 n); cDNA 580 640 ( 61 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E333474+ 1.000 640 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E333474+ (3907 4085,4191 4225,4433 4570,5380 5448,6473 6630,6740 6800) Alignment (genomic DNA sequence = upper lines): CGAGATCGTC AGTTCTCCTG CTCCGGCAGC CATGGCCGCC AAAGCAGCTG CTATACGCAA 3966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGATCGTC AGTTCTCCTG CTCCGGCAGC CATGGCCGCC AAAGCAGCTG CTATACGCAA 60 GAGTAATAGA TCGGAGAATT TCATTCAAAA ACTCGTTAAA AATCCTAAAA TACCTTTTGC 4026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTAATAGA TCGGAGAATT TCATTCAAAA ACTCGTTAAA AATCCTAAAA TACCTTTTGC 120 TATTGCAATA CTCATTGCTG ATGCCATCCT CGTTGCGTTG ATTATCGCTT ACGTTCCATG 4086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TATTGCAATA CTCATTGCTG ATGCCATCCT CGTTGCGTTG ATTATCGCTT ACGTTCCAT. 179 TAAGTTTCAG TTTTCCACAC TTCATTTCCA TTTTTTTTTC TTATGTGTGT ATGAAATCAT 4146 .......... .......... .......... .......... .......... .......... 179 AAAATTCATA AATTGTGAAA TTCCTCAATT TCTCCTTTTT TTAGATACGA AAATTGATTG 4206 |||||| |||||||||| .......... .......... .......... .......... ....ATACGA AAATTGATTG 195 GGATGCTTAT ATGTCTCAGG TGAGAGTTCA ACATTTTGAT CTGTTTGTTT GTCTTGTTCA 4266 |||||||||| ||||||||| GGATGCTTAT ATGTCTCAG. .......... .......... .......... .......... 214 GTAATGTAGC AACGGTTTGA GTTGAATTCA GTCTGATCAG TAATTTGGCT TAAATGACAA 4326 .......... .......... .......... .......... .......... .......... 214 ATTAAGGCAA AATATTTACC AGTATTTGAC ATTATAGTGT GATTTATTGA TATCTTACTT 4386 .......... .......... .......... .......... .......... .......... 214 ATATAGTTTT GATTGATTGA TTTTTTATTT TTTTTTGGTT TAATAGGTTA CTGGTTTTCT 4446 |||| |||||||||| .......... .......... .......... .......... ......GTTA CTGGTTTTCT 228 CGAAGGAGAG AGGGATTATA GTAACTTGAA AGGTGACACG GGGCCTCTAG TTTACCCAGC 4506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGGAGAG AGGGATTATA GTAACTTGAA AGGTGACACG GGGCCTCTAG TTTACCCAGC 288 AGGCTTTCTT TATATTTACT CTGCTATACA ATATGTTACT GGAGGTCAAG TCTATCCTGC 4566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTTTCTT TATATTTACT CTGCTATACA ATATGTTACT GGAGGTCAAG TCTATCCTGC 348 TCAGGTAATT TTCCTACTTT CTCCATTTCC GTGAGGTGCC TTTTTTTGCG GTGATAGCCA 4626 |||| TCAG...... .......... .......... .......... .......... .......... 352 GTGAACTTGC GTAAGGAGTT GTTAGATTGA TTGTGATTGT CCACTTTCAA ATTTGATTAG 4686 .......... .......... .......... .......... .......... .......... 352 ATTTGAAAGA GCACGTAAAT GCAGTTAATT GGTTGTCCCC TTCCAAATTT CATAGATTTT 4746 .......... .......... .......... .......... .......... .......... 352 GCTACTGAAT TTTAAGTAAG TGAGACAATA GTTGTTATGT GTTAACAAAT AATAAAATGG 4806 .......... .......... .......... .......... .......... .......... 352 AAGCATAGCA TCTGTATTGA TGATGTGAAC TAGTAAAGTA GGTGTTTTCT TATGCAGGCT 4866 .......... .......... .......... .......... .......... .......... 352 TTGATTTCTA AGCAGCTACA TTAACAATCT TAACTCTTGC TTTGCTTCGA CTCTGTGTCA 4926 .......... .......... .......... .......... .......... .......... 352 TAATTTTTGG AACTCCAGCT AGATATTCAT GCCCGTGAGG CGTGATGCAC TTTTCTTTGA 4986 .......... .......... .......... .......... .......... .......... 352 AGATGCTACT ACTCTTGGAA GTATACCATC TTCTAGAGTG TTTCTTTTCC AATAATGACA 5046 .......... .......... .......... .......... .......... .......... 352 ATCTGAAGTA AATATTTTCT TTTCCTCTAA CTTAATACTA ACTAGAAAAA ATTGCAATGG 5106 .......... .......... .......... .......... .......... .......... 352 TACACTTTCT ATGCTTGTGT GGCTGGTGTA AGCTTAAAGT AGATTCCAGC ATGAGAAAAA 5166 .......... .......... .......... .......... .......... .......... 352 AAATTAGTAT CCTTTTTCTG GGTTTTGCAT GTTCTGGAAG GTTCATACAT ACATAAGGTG 5226 .......... .......... .......... .......... .......... .......... 352 TAGTCACTTG TTTAGCTAAC TAGTTGTGAC TTTTGTATAA TGTGGGCATA TTCAGCTCGT 5286 .......... .......... .......... .......... .......... .......... 352 TCATTGGATA ATCCGTACAC TATTATGTCC TTCGGTATAT GGTCACGTTA CTTGCTGCCA 5346 .......... .......... .......... .......... .......... .......... 352 GTTGTTGATT TCTATTTTCT CATGCCAGTG CAGATTCTTT TTGGCTTTCT CTACGTGCTG 5406 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATTCTTT TTGGCTTTCT CTACGTGCTG 379 GATCTTGCAA TTGTCTTGTT CATCTACTTG AAGACTGATG TGGTAGGCGT CCTCTTCATC 5466 |||||||||| |||||||||| |||||||||| |||||||||| || GATCTTGCAA TTGTCTTGTT CATCTACTTG AAGACTGATG TG........ .......... 421 TGAATTTTAT GGATAACTTT TTTGGAACTG GTAATTCTGA ATTTTATGGA TGATGTTTTA 5526 .......... .......... .......... .......... .......... .......... 421 GGCTAATGTA TTCTTGAAAA AGAGTTGTAT TGTGACTGCT GTAAGACTGG ATCCAGTGGT 5586 .......... .......... .......... .......... .......... .......... 421 GAAATTTGTT AGTGTTGACT ACAACAACAT ACCTAGTGTA TTACCACAAA GTGGGGTTTG 5646 .......... .......... .......... .......... .......... .......... 421 GGGAGGGTAG AGTGTTTAGA GCTAAGGTCT GCATACACTT TCAAAAGATT TGAGTTTCTA 5706 .......... .......... .......... .......... .......... .......... 421 GGTCCCTATA TATAGTTTTA TACATGGATA TACTTTATCT TCTCACCTTT GCCACTATAG 5766 .......... .......... .......... .......... .......... .......... 421 ACTGAACTCT AGCATAATCT TAGTGCTCTT ATGAATGAAA CCTTATCATT TTATAAAGAA 5826 .......... .......... .......... .......... .......... .......... 421 TAAAATTCTA GACTTCAATT TGAGACCTGG TGACAAAATG CACCTTCTTT AAGCTTACAC 5886 .......... .......... .......... .......... .......... .......... 421 AGATGAGCTT TATTTAAAGG AGGTATCTTG GTAAACGATA AATCAAAATT GAACTTCAAC 5946 .......... .......... .......... .......... .......... .......... 421 GGGATTTATG GAGGAAAAAT ATGATGAGGC TGACAAGTTA TTACGTCTCT GGGAGGTATT 6006 .......... .......... .......... .......... .......... .......... 421 TCTAAATAAA GAAGTTAAAG AACAGTGAAT CTTGGGACTG TAGTTAGACC ATTTATCAAT 6066 .......... .......... .......... .......... .......... .......... 421 ATCATTCAAA TCTTATGCTA AGGAGATCAA GAATTTTTGC TCAAATAATT TCCACAAATA 6126 .......... .......... .......... .......... .......... .......... 421 ATTATGTGTG GTTCAGAGGA AGTTGTAATG TGTAATTGAG GACATCTGTA AAAATTTGTC 6186 .......... .......... .......... .......... .......... .......... 421 TGAACATCTC TAATAAGACG GAGTCTCGAC CAAAACTTTT GGGAATTTGT ATATCTTTTC 6246 .......... .......... .......... .......... .......... .......... 421 ACACTGAATC AAGGTTGGCT TTCAACTGTA GCAAGAGGAG AATGTCCGCA ATATGTCTTA 6306 .......... .......... .......... .......... .......... .......... 421 CTTTCTTCTG ATAACCATTT CTCTTTCTGA TTTAGCTTTA GCCTTGAAAC TTCTAATAAG 6366 .......... .......... .......... .......... .......... .......... 421 TTCTTTCAGT AAATATTCAG AATTCAACCA CTTTGTACTA AGTAGAAAAT CTTTATTCCT 6426 .......... .......... .......... .......... .......... .......... 421 TGGAGTTAAG ATATGCTATG AGTAATTGGA AACATATTTT TTCCAGGTAC CTTGGTGGGC 6486 |||| |||||||||| .......... .......... .......... .......... ......GTAC CTTGGTGGGC 435 TCTCTCCTTG CTTTCTCTGT CGAAAAGAGT TCACTCTATC TTTGTTCTTC GATTATTTAA 6546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTCCTTG CTTTCTCTGT CGAAAAGAGT TCACTCTATC TTTGTTCTTC GATTATTTAA 495 TGATTGTTTT GCCACTACTC TCCTCCATGC TGCATTGGTC TCAATTATCT GCCAAAAATG 6606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTGTTTT GCCACTACTC TCCTCCATGC TGCATTGGTC TCAATTATCT GCCAAAAATG 555 GCATCTAGGG TTGGTAATTT TCAGGTATAT TCTTGCTTGC TTAGACATTT TAATCGTTGG 6666 |||||||||| |||||||||| |||| GCATCTAGGG TTGGTAATTT TCAG...... .......... .......... .......... 579 ATTAAATTTT TCTCTATGTC ATTGATTAAA AACCATCAGT TAAGATTGAT CAATGGTCTT 6726 .......... .......... .......... .......... .......... .......... 579 CTCTTTCGTA CAGCGGAGCT GTTTCCATAA AGATGAATGT GCTCCTGTAT GCACCACCTC 6786 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...CGGAGCT GTTTCCATAA AGATGAATGT GCTCCTGTAT GCACCACCTC 626 TGTTGCTCCT CATG 6800 |||||||||| |||| TGTTGCTCCT CATG 640 hqPGS_C09HBa0099P03.1-2+_SGN-E333474+ (3907 4085,4191 4225,4433 4570,5380 5448,6473 6630,6740 6800) ******************************************************************************** EST sequence 35 +strand 509 n (File: SGN-E233813+) 1 TGGAGTTATA TCTGCTTTAG CAGGGGCTGC ATTAGTGCAG GTGAGTCGGT TACGAGTATA 61 CTTCTGTTGA ATGGAGCTTC TTCTGATCAA ATTCTTTACC AATGATCATG GTGATTGGTG 121 ATTGGTGATT GGTGCAGATT CTCATAGGGC TTCCTTTTAT CCTGTCACAT CCAGCTTCAT 181 ATTTATCAAA CGCTTTCAAT CTTGGTCGGG TTTTCATCCA CTTGTGGTCT GTCAACTTCA 241 AATTTGTTCC TGAAGACATC TTTGTTTCTA AAGCTTGTGC TCTCTCTCTG CTAGTTGCTC 301 ATCTCAGTCT GCTATCGGTG TTTGCTCATT ACAAATGGTG CATGCATGAA GGAGGACTGT 361 TTGCTGTTGT GCGTTCTAAA ATCATTCAAC TGAAGCTCAG AGTTTCTCAG AGAAATACTT 421 CCTCAACCAA GAAAGTACTT CATGCTGACC ATATTGTGAC GACTATGTTT GTTGGGAATT 481 TCATTGGCAT TATATGTGCC CGATCCCTC Predicted gene structure (within gDNA segment 6322 to 9400): Exon 1 6922 6961 ( 40 n); cDNA 1 40 ( 40 n); score: 1.000 Intron 1 6962 7319 ( 358 n); Pd: 0.949 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 2 7320 7505 ( 186 n); cDNA 41 226 ( 186 n); score: 0.995 Intron 2 7506 8200 ( 695 n); Pd: 0.549 (s: 0.98), Pa: 0.996 (s: 1.00) Exon 3 8201 8317 ( 117 n); cDNA 227 343 ( 117 n); score: 0.957 Intron 3 8318 8488 ( 171 n); Pd: 0.996 (s: 0.94), Pa: 0.993 (s: 1.00) Exon 4 8489 8595 ( 107 n); cDNA 344 450 ( 107 n); score: 0.972 Intron 4 8596 8731 ( 136 n); Pd: 0.976 (s: 0.94), Pa: 0.967 (s: 1.00) Exon 5 8732 8790 ( 59 n); cDNA 451 509 ( 59 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E233813+ 0.981 509 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E233813+ (6922 6961,7320 7505,8201 8317,8489 8595,8732 8790) Alignment (genomic DNA sequence = upper lines): TGGAGTTATA TCTGCTTTAG CAGGGGCTGC ATTAGTGCAG GTGGGTAATC TCCAAGTTCC 6981 |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTTATA TCTGCTTTAG CAGGGGCTGC ATTAGTGCAG .......... .......... 40 CTTTCTAATT TCTAATGCAA TGATGTTCAG CGGGCGGCAT GATTTTCTTA TCTTTACTTT 7041 .......... .......... .......... .......... .......... .......... 40 TGTTATTGTG TTCATGACTG CAATTGTGTT CTTTGTAAAT GTTGTTATGG AAAATAGTTT 7101 .......... .......... .......... .......... .......... .......... 40 AAGCATGTTT CGTTATTTGG GGAGGGGAGG TTTGTGGTTG CTCCAGGATC AAGGCATCGC 7161 .......... .......... .......... .......... .......... .......... 40 TTTCTTCGGC GTACTCATGA ACAAAACTTG ATGTTTTAAC TTTTGTGTGA TCTATATGTT 7221 .......... .......... .......... .......... .......... .......... 40 CCATCTTCAA TGCTCTTGGG CATTCTTTTA ATTGTTACAA TATTATTTCT ATTCTTTCCT 7281 .......... .......... .......... .......... .......... .......... 40 CAGAGATCGA CTGATGAGTT TGTGGTTCAT ATGCATAGGT GAGTCGGTTA CGAGTATACT 7341 || |||||||||| |||||||||| .......... .......... .......... ........GT GAGTCGGTTA CGAGTATACT 62 TCTGTTGAAT GGAGCTTCTT CTGATCAAAT TCTTTACCAA TGATCATGGT GATTGGTGAT 7401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTTGAAT GGAGCTTCTT CTGATCAAAT TCTTTACCAA TGATCATGGT GATTGGTGAT 122 TGGTGATTGG TGCAGATTCT CATAGGGCTT CCTTTTATCC TGTCACATCC AGCTTCATAT 7461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGATTGG TGCAGATTCT CATAGGGCTT CCTTTTATCC TGTCACATCC AGCTTCATAT 182 TTATCAAACG CTTTCAATCT TGGTCGGGTT TTCATCCACT TCTGGTACTT TCTTAAACAC 7521 |||||||||| |||||||||| |||||||||| |||||||||| | || TTATCAAACG CTTTCAATCT TGGTCGGGTT TTCATCCACT TGTG...... .......... 226 AATCTGTGCA TAATGGGTAC TCTGAGGCAC CATATCAAAA ATATCATGCA ACTTTTGAGT 7581 .......... .......... .......... .......... .......... .......... 226 CTTTAACATT GCCGTCATCC TTCTTTCTGG ATTTATTTAT GTTTCAGTAA AATTGTTTTA 7641 .......... .......... .......... .......... .......... .......... 226 ATGTGCAAAA TGAATAAACA TTATACCCCT GGATATTTAT GAAATCAGCA TTAATATGGT 7701 .......... .......... .......... .......... .......... .......... 226 GATAAGAGAT TGTGTATCTA TTCACTTGAC ACACTGTTAT ATAATCGTGC ATTATCATTA 7761 .......... .......... .......... .......... .......... .......... 226 TATGAAACAA CATTATTGTA TTTGTCATGC ACTTTTTACC TTAAATGTCA TCAAACAATA 7821 .......... .......... .......... .......... .......... .......... 226 CACTGGTATT TGGTGGTGTC TGCTAAATGT AGGAGATGCA TGTTCTTACT GCTGGCTGTA 7881 .......... .......... .......... .......... .......... .......... 226 GTTTGTTCTC TGTCTCGTCC CTTGGGAGTT CGGGTGGGTA GTGGGCTCGT TTCTTTCAGT 7941 .......... .......... .......... .......... .......... .......... 226 GGACGTAGAC AGCAAAGTAC TTTTTTTCCC CATATCCCTT GAATATCACT CTTACCCTAA 8001 .......... .......... .......... .......... .......... .......... 226 GCCTACTCTG ATCTTCTAAC TAAAGTTCAG TCAAATCCTT ATAAATTTTA AGTTGTATTT 8061 .......... .......... .......... .......... .......... .......... 226 GGTATGCCTT TTAGAATAAT CTTATTCGCT AAGAACTGTA TTTCTATCAA CTGTGTTGGT 8121 .......... .......... .......... .......... .......... .......... 226 GCAACATTAT GCTCATGTCA TGATGTTGTG CTATCCTTTA CAAAGAACAA TTTATCGTAA 8181 .......... .......... .......... .......... .......... .......... 226 CTCTCTTCTT TTGTTGCAGG TCTGTCAACT TCAAATTTGT TCCTGAAGAC ATCTTTGTTT 8241 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TCTGTCAACT TCAAATTTGT TCCTGAAGAC ATCTTTGTTT 267 CTAAAGCTTT TGCTCTCTCT TTGCTAGTTG CTCATCTCAG TCTGCTATTG GTGTTTGCTC 8301 ||||||||| |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| CTAAAGCTTG TGCTCTCTCT CTGCTAGTTG CTCATCTCAG TCTGCTATCG GTGTTTGCTC 327 ATTACAGATG GTGCAGGTGA GTATTTCTCA TATTATCATT ACATCTAGTG TAGTGGCGTT 8361 |||||| ||| ||||| ATTACAAATG GTGCAT.... .......... .......... .......... .......... 343 GATATTCCAG TACTGAAGTA GGAAAAGAAA AGTCATAATA TGATAACTAT ATCATTTTCT 8421 .......... .......... .......... .......... .......... .......... 343 TCTCTACATA CAAAGGCAAT AAGTTAGCGG CTACTGGACT GCATTTTTCC TTTTTCATCT 8481 .......... .......... .......... .......... .......... .......... 343 TTTGCAGGCA TGAAGGAGGA CTGTTTGCTG TTGTGCGTTC TAAAATCATT CAACTGAAGC 8541 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCA TGAAGGAGGA CTGTTTGCTG TTGTGCGTTC TAAAATCATT CAACTGAAGC 396 TCAGAGTTTC TCAGAGAAAT CCTTCCTCAA CCAAGAAAGT CCTTCAAGCT GACCGTAAGC 8601 |||||||||| |||||||||| ||||||||| |||||||||| ||||| ||| |||| TCAGAGTTTC TCAGAGAAAT ACTTCCTCAA CCAAGAAAGT ACTTCATGCT GACC...... 450 AACATGCACA ATTTATTTTG TGATTTTTCT ATACTCAAAA AGGCTGTCAA GTGTTATACT 8661 .......... .......... .......... .......... .......... .......... 450 GTCACTAGTT TTGTCTTGAT TTGACATGAT CTTTGGTTGC TGAATTGGTC TGTGTCTATT 8721 .......... .......... .......... .......... .......... .......... 450 TCATTCTCAG ATATTGTGAC GACTATGTTT GTTGGGAATT TCATTGGCAT TATATGTGCC 8781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ATATTGTGAC GACTATGTTT GTTGGGAATT TCATTGGCAT TATATGTGCC 500 CGATCCCTC 8790 ||||||||| CGATCCCTC 509 hqPGS_C09HBa0099P03.1-2+_SGN-E233813+ (6922 6961,7320 7505,8201 8317,8489 8595,8732 8790) ******************************************************************************** EST sequence 27 +strand 398 n (File: SGN-E233326+) 1 TGGAGTTATA TCTGCTTTAG CAGGGGCTGC ATTAGTGCAG GTGAGTCGGT TACGAGTATA 61 CTTCTGTTGA ATGGAGCTTC TTCTGATCAA ATTCTTTACC AATGATCATG GTGATTGGTG 121 ATTGGTGATT GGTGCAGATT CTCATAGGGC TTCCTTTTAT CCTGTCACAT CCAGCTTCAT 181 ATTTATCAAA CGCTTTCAAT CTTGGTCGGG TTTTCATCCA CTTCTGGTCT GTCAACTTCA 241 AATTTGTTCC TGAAGACATC TTTGTTTCTA AAGCTTTAGC TCTCTCTTTG CTAGTTGCTC 301 ATCTCAGTCT GCTATTGGTG TTTGCTCATT ACAGATGGTG CAGGCATGAA TGAGGACTGT 361 TTGCTGTTGT GCGTTCTAAA ATCATTCAAC TGAAGCTC Predicted gene structure (within gDNA segment 6322 to 9153): Exon 1 6922 6961 ( 40 n); cDNA 1 40 ( 40 n); score: 1.000 Intron 1 6962 7319 ( 358 n); Pd: 0.949 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 2 7320 7505 ( 186 n); cDNA 41 226 ( 186 n); score: 1.000 Intron 2 7506 8200 ( 695 n); Pd: 0.549 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 8201 8317 ( 117 n); cDNA 227 343 ( 117 n); score: 0.991 Intron 3 8318 8488 ( 171 n); Pd: 0.996 (s: 1.00), Pa: 0.993 (s: 0.98) Exon 4 8489 8543 ( 55 n); cDNA 344 398 ( 55 n); score: 0.982 MATCH C09HBa0099P03.1-2+ SGN-E233326+ 0.994 398 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E233326+ (6922 6961,7320 7505,8201 8317,8489 8543) Alignment (genomic DNA sequence = upper lines): TGGAGTTATA TCTGCTTTAG CAGGGGCTGC ATTAGTGCAG GTGGGTAATC TCCAAGTTCC 6981 |||||||||| |||||||||| |||||||||| |||||||||| TGGAGTTATA TCTGCTTTAG CAGGGGCTGC ATTAGTGCAG .......... .......... 40 CTTTCTAATT TCTAATGCAA TGATGTTCAG CGGGCGGCAT GATTTTCTTA TCTTTACTTT 7041 .......... .......... .......... .......... .......... .......... 40 TGTTATTGTG TTCATGACTG CAATTGTGTT CTTTGTAAAT GTTGTTATGG AAAATAGTTT 7101 .......... .......... .......... .......... .......... .......... 40 AAGCATGTTT CGTTATTTGG GGAGGGGAGG TTTGTGGTTG CTCCAGGATC AAGGCATCGC 7161 .......... .......... .......... .......... .......... .......... 40 TTTCTTCGGC GTACTCATGA ACAAAACTTG ATGTTTTAAC TTTTGTGTGA TCTATATGTT 7221 .......... .......... .......... .......... .......... .......... 40 CCATCTTCAA TGCTCTTGGG CATTCTTTTA ATTGTTACAA TATTATTTCT ATTCTTTCCT 7281 .......... .......... .......... .......... .......... .......... 40 CAGAGATCGA CTGATGAGTT TGTGGTTCAT ATGCATAGGT GAGTCGGTTA CGAGTATACT 7341 || |||||||||| |||||||||| .......... .......... .......... ........GT GAGTCGGTTA CGAGTATACT 62 TCTGTTGAAT GGAGCTTCTT CTGATCAAAT TCTTTACCAA TGATCATGGT GATTGGTGAT 7401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTTGAAT GGAGCTTCTT CTGATCAAAT TCTTTACCAA TGATCATGGT GATTGGTGAT 122 TGGTGATTGG TGCAGATTCT CATAGGGCTT CCTTTTATCC TGTCACATCC AGCTTCATAT 7461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGATTGG TGCAGATTCT CATAGGGCTT CCTTTTATCC TGTCACATCC AGCTTCATAT 182 TTATCAAACG CTTTCAATCT TGGTCGGGTT TTCATCCACT TCTGGTACTT TCTTAAACAC 7521 |||||||||| |||||||||| |||||||||| |||||||||| |||| TTATCAAACG CTTTCAATCT TGGTCGGGTT TTCATCCACT TCTG...... .......... 226 AATCTGTGCA TAATGGGTAC TCTGAGGCAC CATATCAAAA ATATCATGCA ACTTTTGAGT 7581 .......... .......... .......... .......... .......... .......... 226 CTTTAACATT GCCGTCATCC TTCTTTCTGG ATTTATTTAT GTTTCAGTAA AATTGTTTTA 7641 .......... .......... .......... .......... .......... .......... 226 ATGTGCAAAA TGAATAAACA TTATACCCCT GGATATTTAT GAAATCAGCA TTAATATGGT 7701 .......... .......... .......... .......... .......... .......... 226 GATAAGAGAT TGTGTATCTA TTCACTTGAC ACACTGTTAT ATAATCGTGC ATTATCATTA 7761 .......... .......... .......... .......... .......... .......... 226 TATGAAACAA CATTATTGTA TTTGTCATGC ACTTTTTACC TTAAATGTCA TCAAACAATA 7821 .......... .......... .......... .......... .......... .......... 226 CACTGGTATT TGGTGGTGTC TGCTAAATGT AGGAGATGCA TGTTCTTACT GCTGGCTGTA 7881 .......... .......... .......... .......... .......... .......... 226 GTTTGTTCTC TGTCTCGTCC CTTGGGAGTT CGGGTGGGTA GTGGGCTCGT TTCTTTCAGT 7941 .......... .......... .......... .......... .......... .......... 226 GGACGTAGAC AGCAAAGTAC TTTTTTTCCC CATATCCCTT GAATATCACT CTTACCCTAA 8001 .......... .......... .......... .......... .......... .......... 226 GCCTACTCTG ATCTTCTAAC TAAAGTTCAG TCAAATCCTT ATAAATTTTA AGTTGTATTT 8061 .......... .......... .......... .......... .......... .......... 226 GGTATGCCTT TTAGAATAAT CTTATTCGCT AAGAACTGTA TTTCTATCAA CTGTGTTGGT 8121 .......... .......... .......... .......... .......... .......... 226 GCAACATTAT GCTCATGTCA TGATGTTGTG CTATCCTTTA CAAAGAACAA TTTATCGTAA 8181 .......... .......... .......... .......... .......... .......... 226 CTCTCTTCTT TTGTTGCAGG TCTGTCAACT TCAAATTTGT TCCTGAAGAC ATCTTTGTTT 8241 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TCTGTCAACT TCAAATTTGT TCCTGAAGAC ATCTTTGTTT 267 CTAAAGCTTT TGCTCTCTCT TTGCTAGTTG CTCATCTCAG TCTGCTATTG GTGTTTGCTC 8301 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAAGCTTT AGCTCTCTCT TTGCTAGTTG CTCATCTCAG TCTGCTATTG GTGTTTGCTC 327 ATTACAGATG GTGCAGGTGA GTATTTCTCA TATTATCATT ACATCTAGTG TAGTGGCGTT 8361 |||||||||| |||||| ATTACAGATG GTGCAG.... .......... .......... .......... .......... 343 GATATTCCAG TACTGAAGTA GGAAAAGAAA AGTCATAATA TGATAACTAT ATCATTTTCT 8421 .......... .......... .......... .......... .......... .......... 343 TCTCTACATA CAAAGGCAAT AAGTTAGCGG CTACTGGACT GCATTTTTCC TTTTTCATCT 8481 .......... .......... .......... .......... .......... .......... 343 TTTGCAGGCA TGAAGGAGGA CTGTTTGCTG TTGTGCGTTC TAAAATCATT CAACTGAAGC 8541 ||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCA TGAATGAGGA CTGTTTGCTG TTGTGCGTTC TAAAATCATT CAACTGAAGC 396 TC 8543 || TC 398 hqPGS_C09HBa0099P03.1-2+_SGN-E233326+ (6922 6961,7320 7505,8201 8317,8489 8543) ******************************************************************************** EST sequence 34 +strand 730 n (File: SGN-E309356+) 1 AGGACTGTTT GCTGTTGTGC GTTCTAAAAT CATTCAACTG AAGCTCAGAG TTTCTCAGAG 61 AAATCCTTCC TCAACCAAGA AAGTCCTTCA AGCTGACCAT ATTGTGACGA CTATGTTTGT 121 TGGGAATTTC ATTGGCATTA TATGTGCCCG ATCCCTCCAT TACCAATTTT ATTCTTGGTA 181 CTTCTATTGC TTACCATATT TATTGTGGAA AGCACCATTT CCAACCCTCC TACGTTTATT 241 CTTGTTCGCA GCTGTAGAGT TTTGCTGGAA CGTCTTCCCC TCCAACACTT GCTCATCACT 301 TGTCCTCCTC TGTGTCCATT TGATCATATT GGCCGGTCTA TGGATAAGTT CACCAGAATA 361 TCCGTACGTC GAAGAAAAAA CAACTTATAA ATCTACACCT AAGAAGAAGG CCAGATAAAG 421 CACTTNCTGG TTATGCATGT GAATGGCAGA TAAAGAAAAA ACAACTGATA AAACAAAGTT 481 TTTGTTTTTC TGTTTCTTTT CGTAGTGTTA ATGCTTACAG TTTTGTTAGA TGGTATACAA 541 AACCAGAAAG GTGGTAACAA CCACACGAAG ATCATCCAAT GGCATCAAGG ATGAATATTT 601 TCTGGGGGGT TTTCAACATT TGAGGATTTC ATTAGCTCAA ATCTGAATTA GACTTGAATA 661 TTTTAGAAGG TCAACCTATT TTATTTATCT AAATCTGTAT GGTGTACTAT TTATTGTCAA 721 GATTTAAGGA Predicted gene structure (within gDNA segment 7898 to 10868): Exon 1 8498 8595 ( 98 n); cDNA 1 98 ( 98 n); score: 1.000 Intron 1 8596 8731 ( 136 n); Pd: 0.976 (s: 1.00), Pa: 0.967 (s: 1.00) Exon 2 8732 8810 ( 79 n); cDNA 99 177 ( 79 n); score: 1.000 Intron 2 8811 9623 ( 813 n); Pd: 0.994 (s: 1.00), Pa: 0.776 (s: 1.00) Exon 3 9624 9680 ( 57 n); cDNA 178 234 ( 57 n); score: 1.000 Intron 3 9681 9763 ( 83 n); Pd: 0.996 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 4 9764 10258 ( 495 n); cDNA 235 730 ( 496 n); score: 0.991 MATCH C09HBa0099P03.1-2+ SGN-E309356+ 0.994 729 0.999 C PGS_C09HBa0099P03.1-2+_SGN-E309356+ (8498 8595,8732 8810,9624 9680,9764 10258) Alignment (genomic DNA sequence = upper lines): AGGACTGTTT GCTGTTGTGC GTTCTAAAAT CATTCAACTG AAGCTCAGAG TTTCTCAGAG 8557 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACTGTTT GCTGTTGTGC GTTCTAAAAT CATTCAACTG AAGCTCAGAG TTTCTCAGAG 60 AAATCCTTCC TCAACCAAGA AAGTCCTTCA AGCTGACCGT AAGCAACATG CACAATTTAT 8617 |||||||||| |||||||||| |||||||||| |||||||| AAATCCTTCC TCAACCAAGA AAGTCCTTCA AGCTGACC.. .......... .......... 98 TTTGTGATTT TTCTATACTC AAAAAGGCTG TCAAGTGTTA TACTGTCACT AGTTTTGTCT 8677 .......... .......... .......... .......... .......... .......... 98 TGATTTGACA TGATCTTTGG TTGCTGAATT GGTCTGTGTC TATTTCATTC TCAGATATTG 8737 |||||| .......... .......... .......... .......... .......... ....ATATTG 104 TGACGACTAT GTTTGTTGGG AATTTCATTG GCATTATATG TGCCCGATCC CTCCATTACC 8797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGACTAT GTTTGTTGGG AATTTCATTG GCATTATATG TGCCCGATCC CTCCATTACC 164 AATTTTATTC TTGGTAAGTT TTTGCAGCTT ATTTCTTTCT TTAGGTCATG GATTCGATCT 8857 |||||||||| ||| AATTTTATTC TTG....... .......... .......... .......... .......... 177 CATACTCCTC ACCTCTTAAC ACAAATGTCT TGATGTGTTA TTAAGGGTTA GCTGAACTAA 8917 .......... .......... .......... .......... .......... .......... 177 TTTTCAGAGT GAATTAGAAG AAGATTTTAA TTGTCCACAT TAATTTAAAT ATGCAACTTT 8977 .......... .......... .......... .......... .......... .......... 177 CCATATATTT AAACATTTGA AAAGCTTTAG TAAATGATAA TTTTGCTTTG ATTCTTGGAA 9037 .......... .......... .......... .......... .......... .......... 177 TAGTTAACAA TAATATTCAG CTTGAGATAG ATGCATGCTT TTATGATCTT ATGTTTGTAT 9097 .......... .......... .......... .......... .......... .......... 177 TGAGCTCAGT TCTGGTGGTA ACTGCTCATA AAAGCACAAC ATATATTTCA AGAGGACATA 9157 .......... .......... .......... .......... .......... .......... 177 ATTGAAATGT TTAATCAGAA ATCAGAATGA TAAACTGTTT TATTCTAACT TAGTAATTGT 9217 .......... .......... .......... .......... .......... .......... 177 GCCACACTAA AATAAATAAT GCGTTTCAGA CAGACATAGT AATAAATAGA GATGCTTCAG 9277 .......... .......... .......... .......... .......... .......... 177 CATCTCATTG AAGAACAGAG AATTTTGGGG TGCATTTTGT TAGTAGTTCA CGGGACTGCA 9337 .......... .......... .......... .......... .......... .......... 177 GCATGTACTT AAGGGAGAAG TGTATTTAAA TATAAAATGC TCATTGAGTA GTTGACCACC 9397 .......... .......... .......... .......... .......... .......... 177 TCTCTGTGTG TAACTTTTTC CCCGGTGAGT CGGTGAAGAT CACAAAAAAT CAGCTCCTCT 9457 .......... .......... .......... .......... .......... .......... 177 CCCCTGCTAG CATGGCACCA AACAAGACAT AAAGGCCTTG ACTAACATTT GCCAAGCAAA 9517 .......... .......... .......... .......... .......... .......... 177 TGGAAATTTG GAAGATTACT CGCTCTTTCA CTGCGTTCCT GGGTTCTGTG TCAAAGTTTT 9577 .......... .......... .......... .......... .......... .......... 177 AATTGAATTA AGATAAAACC ATTGATGTCC TAGAGCTTGT TTGCAGGTAC TTCTATTGCT 9637 |||| |||||||||| .......... .......... .......... .......... ......GTAC TTCTATTGCT 191 TACCATATTT ATTGTGGAAA GCACCATTTC CAACCCTCCT ACGGTATACA ACTTAATACT 9697 |||||||||| |||||||||| |||||||||| |||||||||| ||| TACCATATTT ATTGTGGAAA GCACCATTTC CAACCCTCCT ACG....... .......... 234 CAAACTTCTC TGTTTGCTTT AGTTTTTTGG TATTTTCTGT TGACAAGTTT TCGTGTTGTA 9757 .......... .......... .......... .......... .......... .......... 234 CTGCAGTTTA TTCTTGTTCG CAGCTGTAGA GTTTTGCTGG AACGTCTTCC CCTCCAACAC 9817 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......TTTA TTCTTGTTCG CAGCTGTAGA GTTTTGCTGG AACGTCTTCC CCTCCAACAC 288 TTGCTCATCA CTTGTCCTCC TCTGTGTCCA TTTGATCATA TTGGCCGGTC TATGGATAAG 9877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTCATCA CTTGTCCTCC TCTGTGTCCA TTTGATCATA TTGGCCGGTC TATGGATAAG 348 TTCACCAGAA TATCCGTACG TCGAAGAAAA AACAACTTAT AAATCTACAC CTAAGAAGAA 9937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACCAGAA TATCCGTACG TCGAAGAAAA AACAACTTAT AAATCTACAC CTAAGAAGAA 408 GGCCAGATAA AGCACTATCT GGTTATGCAT GTGAATGGCA GATAAAGAAA AAACAACTGA 9997 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| |||||||||| GGCCAGATAA AGCACTTNCT GGTTATGCAT GTGAATGGCA GATAAAGAAA AAACAACTGA 468 TAAAACAAAG TTTTTGTTTT TCTGTTTCTT TTCGTAGTGT TAATGCTTAC AGTTTTGTTA 10057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAACAAAG TTTTTGTTTT TCTGTTTCTT TTCGTAGTGT TAATGCTTAC AGTTTTGTTA 528 GATGGTATAC AAAACCAGAA AGGTGGTAAC AACCACACGA AGATCATCCA ATGGCATCAA 10117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTATAC AAAACCAGAA AGGTGGTAAC AACCACACGA AGATCATCCA ATGGCATCAA 588 GGATGAATAT TTTCT-GGGG GTTTTCAACA TTTGAGGATT TCATTAGCTC AAATCTGAAT 10176 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGAATAT TTTCTGGGGG GTTTTCAACA TTTGAGGATT TCATTAGCTC AAATCTGAAT 648 TAGACTTGAA TATTTTAGAA GGTCAACCTA TTTTATTTAT CTAAATCTGT ATGGTGTACT 10236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGACTTGAA TATTTTAGAA GGTCAACCTA TTTTATTTAT CTAAATCTGT ATGGTGTACT 708 ATTTATTGTC AAGATTTAAG GA 10258 |||||||||| |||||||||| || ATTTATTGTC AAGATTTAAG GA 730 hqPGS_C09HBa0099P03.1-2+_SGN-E309356+ (8498 8595,8732 8810,9624 9680,9764 10258) ******************************************************************************** EST sequence 10 +strand 714 n (File: SGN-E350785+) 1 TTTTTTTTAG AGAATAATAC ATGTATTAAC AAACACCAAA TGAACATTGT ATTAACCATA 61 AACCACTGCC AAAGCACCAC TGTCACTTTA TTTGAAATTG CAACTGAAAA GAAAAATACT 121 CCTACTTAAA GTATACAATA TAAACACTAC GAAATTATTC AAAACAATTA CACTTACTAA 181 TAATTAATTA ACATCGATTA ATTCGATCTT TAATTAATTT AACTCCGGCA ACGAGTAATA 241 GCACTGCAAC CACGTGTATA CGGATTAGCT TCAGCACCTG TTTTGCAGTT ATAATACGAC 301 GCACCTCTTC TAGAACACGG AACACTGTTA CTCTGCAGCG CACCATAGCT TATATAATCA 361 GTAGTTGCTA ATATACGCCT GTTGCTCTCC GAATCCATTT CGAATTCTCC GGCAGCCATA 421 CACTCCGCTA TCGAACCTTC ACAGCTATCG GCGGATTTCA TCGGAATCCA ACCGCTCACG 481 TCGAAATCGC CGCCGGTAGC ATCGCCGGAG ATGATCAAAG CTGCGATCAA TAATGAAGAG 541 ATGATGAAAA TGGAACAAAA GGAATTCGCA GCCATTGTTG ATAAATTTTT CAATGCTGAT 601 CGGTGGAAAA AGGGCTATAA AGTCGGTTTG TTGTAACAAA ACATATTTGG CTTTCTTGTC 661 CTCTCTACTT TGAAATCAGA AAACAATATC TTGTTTAAAA AATGGCATCG TTTG Predicted gene structure (within gDNA segment 10190 to 13157): Exon 1 10573 10579 ( 7 n); cDNA 1 7 ( 7 n); score: 0.714 Intron 1 10580 10859 ( 280 n); Pd: 0.504 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 10860 11454 ( 595 n); cDNA 8 602 ( 595 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E350785+ 1.000 602 0.843 C PGS_C09HBa0099P03.1-2+_SGN-E350785+ (10573 10579,10860 11454) Alignment (genomic DNA sequence = upper lines): TTTTTCGGTA CTACTGCTAG TTTGTCACAA TCTTATAGCA CTAAGTTTTC GTTATATGGG 10632 ||||| TTTTTTT... .......... .......... .......... .......... .......... 7 AAATTTATGA AAAGAACCCT AGACATCTTA TAGCACTAAG CTCTCGTTAT GTGGGAAATT 10692 .......... .......... .......... .......... .......... .......... 7 TATAAAAAGA GCTCTGAACC ACAAAGTCTA TCTTTACAAG ATATTGTTTT CACAATTCGA 10752 .......... .......... .......... .......... .......... .......... 7 ATCTATGACC TCCTTAGTCA CCTAATAACA AATCTACCAA TTGCGTCAAT ATTTCCTTTA 10812 .......... .......... .......... .......... .......... .......... 7 GTTTGCAACA ATATTTGTGC GAATATAATA AAAAAAACAA AAACAAGTAG AGAATAATAC 10872 ||| |||||||||| .......... .......... .......... .......... .......TAG AGAATAATAC 20 ATGTATTAAC AAACACCAAA TGAACATTGT ATTAACCATA AACCACTGCC AAAGCACCAC 10932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATTAAC AAACACCAAA TGAACATTGT ATTAACCATA AACCACTGCC AAAGCACCAC 80 TGTCACTTTA TTTGAAATTG CAACTGAAAA GAAAAATACT CCTACTTAAA GTATACAATA 10992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCACTTTA TTTGAAATTG CAACTGAAAA GAAAAATACT CCTACTTAAA GTATACAATA 140 TAAACACTAC GAAATTATTC AAAACAATTA CACTTACTAA TAATTAATTA ACATCGATTA 11052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACACTAC GAAATTATTC AAAACAATTA CACTTACTAA TAATTAATTA ACATCGATTA 200 ATTCGATCTT TAATTAATTT AACTCCGGCA ACGAGTAATA GCACTGCAAC CACGTGTATA 11112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCGATCTT TAATTAATTT AACTCCGGCA ACGAGTAATA GCACTGCAAC CACGTGTATA 260 CGGATTAGCT TCAGCACCTG TTTTGCAGTT ATAATACGAC GCACCTCTTC TAGAACACGG 11172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATTAGCT TCAGCACCTG TTTTGCAGTT ATAATACGAC GCACCTCTTC TAGAACACGG 320 AACACTGTTA CTCTGCAGCG CACCATAGCT TATATAATCA GTAGTTGCTA ATATACGCCT 11232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACTGTTA CTCTGCAGCG CACCATAGCT TATATAATCA GTAGTTGCTA ATATACGCCT 380 GTTGCTCTCC GAATCCATTT CGAATTCTCC GGCAGCCATA CACTCCGCTA TCGAACCTTC 11292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTCTCC GAATCCATTT CGAATTCTCC GGCAGCCATA CACTCCGCTA TCGAACCTTC 440 ACAGCTATCG GCGGATTTCA TCGGAATCCA ACCGCTCACG TCGAAATCGC CGCCGGTAGC 11352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCTATCG GCGGATTTCA TCGGAATCCA ACCGCTCACG TCGAAATCGC CGCCGGTAGC 500 ATCGCCGGAG ATGATCAAAG CTGCGATCAA TAATGAAGAG ATGATGAAAA TGGAACAAAA 11412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCCGGAG ATGATCAAAG CTGCGATCAA TAATGAAGAG ATGATGAAAA TGGAACAAAA 560 GGAATTCGCA GCCATTGTTG ATAAATTTTT CAATGCTGAT CG 11454 |||||||||| |||||||||| |||||||||| |||||||||| || GGAATTCGCA GCCATTGTTG ATAAATTTTT CAATGCTGAT CG 602 hqPGS_C09HBa0099P03.1-2+_SGN-E350785+ (10573 10579,10860 11454) ******************************************************************************** EST sequence 89 -strand 310 n (File: SGN-E308491-) 1 TTTTTTTTTT ATTAACAAAC ACCAAATGAA CATTGTATTA ACCATAAACC ACTGCCAAAG 61 CACCACTGTC ACTTTATTTG AAATTGCAAC TGAAAAGAAA AATACTCCTA CTTAAAGTAT 121 ACAATATAAA CACTACGAAA TTATTCAAAA CAATTACACT TACTAATAAT TAATTAACAT 181 CGATTAATTC GATCTTTAAT TAATTTAACT CCGGCAACGA GTAATAGCAC TGCAACCACG 241 TGTATACGGA TTAGCTTCAG CACCTGTTTT GCAGTTATAA TACGACGCAC CTCTTCTAGA 301 ACACGGAACA Predicted gene structure (within gDNA segment 10176 to 11776): Exon 1 10876 11176 ( 301 n); cDNA 10 310 ( 301 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E308491- 1.000 301 0.971 C PGS_C09HBa0099P03.1-2+_SGN-E308491- (10876 11176) Alignment (genomic DNA sequence = upper lines): TATTAACAAA CACCAAATGA ACATTGTATT AACCATAAAC CACTGCCAAA GCACCACTGT 10935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAACAAA CACCAAATGA ACATTGTATT AACCATAAAC CACTGCCAAA GCACCACTGT 69 CACTTTATTT GAAATTGCAA CTGAAAAGAA AAATACTCCT ACTTAAAGTA TACAATATAA 10995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTATTT GAAATTGCAA CTGAAAAGAA AAATACTCCT ACTTAAAGTA TACAATATAA 129 ACACTACGAA ATTATTCAAA ACAATTACAC TTACTAATAA TTAATTAACA TCGATTAATT 11055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTACGAA ATTATTCAAA ACAATTACAC TTACTAATAA TTAATTAACA TCGATTAATT 189 CGATCTTTAA TTAATTTAAC TCCGGCAACG AGTAATAGCA CTGCAACCAC GTGTATACGG 11115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCTTTAA TTAATTTAAC TCCGGCAACG AGTAATAGCA CTGCAACCAC GTGTATACGG 249 ATTAGCTTCA GCACCTGTTT TGCAGTTATA ATACGACGCA CCTCTTCTAG AACACGGAAC 11175 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGCTTCA GCACCTGTTT TGCAGTTATA ATACGACGCA CCTCTTCTAG AACACGGAAC 309 A 11176 | A 310 hqPGS_C09HBa0099P03.1-2+_SGN-E308491- (10876 11176) ******************************************************************************** EST sequence 75 -strand 553 n (File: SGN-E302652-) 1 AATGAACATT GTATTAACCA TAAACCACTG CCAAAGCACC ACTGTCACTT TATTTGAAAT 61 TGCAACTGAA AAGAAAAATA CTCCTACTTA AAGTATACAA TATAAACACT ACGAAATTAT 121 TCAAAACAAT TACACTTACT AATAATTAAT TAACATCGAT TAATTCGATC TTTAATTAAT 181 TTAACTCCGG CAACGAGTAA TAGCACTGCA ACCACGTGTA TACGGATTAG CTTCAGCACC 241 TGTTTTGCAG TTATAATACG ACGCACCTCT TCTAGAACAC GGAACACTGT TACTCTGCAG 301 CGCACCATAG CTTATATAAT CAGTAGTTGC TAATATACGC CTGTTGCTCT CCGAATCCAT 361 TTCGAATTCT CCGGCAGCCA TACACTCCGC TATCGAACCT TCACAGCTAT CGGCGGATTT 421 CATCGGAATC CAACCGCTCA CGTCGAAATC GCCGCCGGTA GCATCGCCGG AGATGATCAA 481 AGCTGCGATC AATAATGAAG AGATGATGAA AATGGAACAA AAGGAATTCG CAGCCATTGT 541 TGATAAATTT TTC Predicted gene structure (within gDNA segment 10281 to 12043): Exon 1 10891 11443 ( 553 n); cDNA 1 553 ( 553 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E302652- 1.000 553 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E302652- (10891 11443) Alignment (genomic DNA sequence = upper lines): AATGAACATT GTATTAACCA TAAACCACTG CCAAAGCACC ACTGTCACTT TATTTGAAAT 10950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAACATT GTATTAACCA TAAACCACTG CCAAAGCACC ACTGTCACTT TATTTGAAAT 60 TGCAACTGAA AAGAAAAATA CTCCTACTTA AAGTATACAA TATAAACACT ACGAAATTAT 11010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAACTGAA AAGAAAAATA CTCCTACTTA AAGTATACAA TATAAACACT ACGAAATTAT 120 TCAAAACAAT TACACTTACT AATAATTAAT TAACATCGAT TAATTCGATC TTTAATTAAT 11070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAACAAT TACACTTACT AATAATTAAT TAACATCGAT TAATTCGATC TTTAATTAAT 180 TTAACTCCGG CAACGAGTAA TAGCACTGCA ACCACGTGTA TACGGATTAG CTTCAGCACC 11130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACTCCGG CAACGAGTAA TAGCACTGCA ACCACGTGTA TACGGATTAG CTTCAGCACC 240 TGTTTTGCAG TTATAATACG ACGCACCTCT TCTAGAACAC GGAACACTGT TACTCTGCAG 11190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTTGCAG TTATAATACG ACGCACCTCT TCTAGAACAC GGAACACTGT TACTCTGCAG 300 CGCACCATAG CTTATATAAT CAGTAGTTGC TAATATACGC CTGTTGCTCT CCGAATCCAT 11250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCACCATAG CTTATATAAT CAGTAGTTGC TAATATACGC CTGTTGCTCT CCGAATCCAT 360 TTCGAATTCT CCGGCAGCCA TACACTCCGC TATCGAACCT TCACAGCTAT CGGCGGATTT 11310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAATTCT CCGGCAGCCA TACACTCCGC TATCGAACCT TCACAGCTAT CGGCGGATTT 420 CATCGGAATC CAACCGCTCA CGTCGAAATC GCCGCCGGTA GCATCGCCGG AGATGATCAA 11370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGGAATC CAACCGCTCA CGTCGAAATC GCCGCCGGTA GCATCGCCGG AGATGATCAA 480 AGCTGCGATC AATAATGAAG AGATGATGAA AATGGAACAA AAGGAATTCG CAGCCATTGT 11430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCGATC AATAATGAAG AGATGATGAA AATGGAACAA AAGGAATTCG CAGCCATTGT 540 TGATAAATTT TTC 11443 |||||||||| ||| TGATAAATTT TTC 553 hqPGS_C09HBa0099P03.1-2+_SGN-E302652- (10891 11443) ******************************************************************************** EST sequence 71 -strand 492 n (File: SGN-E304451-) 1 TTTTTTAACC ATAACCCACT GCCAAAGCAC CACTGTCACT TTATTTGAAA TTGCAACTGA 61 AAAGAAAAAT ACTCCTACTT AAAGTATACA ATATAACCAC TACGAAATTA TTCAAAACAA 121 TTACACTTAC TAATAATTAA TTAACATCGA TTAATTCGAT CTTTAATTAA TTTAACTCCG 181 GCAACGAGTA ATAGCACTGC AACCACGTGT ATACGGATTA GCTTCAGCAC CTGTTTTGCA 241 GTTATAATAC GACGCACCTC TTCTAGAACA CGGAACACTG TTACTCTGCA GCGCACCATA 301 GCTTATATAA TCAGTAGTTG CTAATATACG CCTGTTGCTC TCCGAATCCA TTTCGAATTC 361 TCCGGCAGCC ATACACTCCG CTATCGAACC TTCACAGCTA TCGGCGGATT TCATCGGAAT 421 CCAACCGCTC ACGTCGAAAT CGCCGCCGGT AGCATCGCCG GAGATGATCA AAGCTGCGAT 481 CAATAATGAA GA Predicted gene structure (within gDNA segment 10155 to 11991): Exon 1 10904 11391 ( 488 n); cDNA 5 492 ( 488 n); score: 0.996 MATCH C09HBa0099P03.1-2+ SGN-E304451- 0.996 488 0.992 C PGS_C09HBa0099P03.1-2+_SGN-E304451- (10904 11391) Alignment (genomic DNA sequence = upper lines): TTAACCATAA ACCACTGCCA AAGCACCACT GTCACTTTAT TTGAAATTGC AACTGAAAAG 10963 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACCATAA CCCACTGCCA AAGCACCACT GTCACTTTAT TTGAAATTGC AACTGAAAAG 64 AAAAATACTC CTACTTAAAG TATACAATAT AAACACTACG AAATTATTCA AAACAATTAC 11023 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAAAATACTC CTACTTAAAG TATACAATAT AACCACTACG AAATTATTCA AAACAATTAC 124 ACTTACTAAT AATTAATTAA CATCGATTAA TTCGATCTTT AATTAATTTA ACTCCGGCAA 11083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTACTAAT AATTAATTAA CATCGATTAA TTCGATCTTT AATTAATTTA ACTCCGGCAA 184 CGAGTAATAG CACTGCAACC ACGTGTATAC GGATTAGCTT CAGCACCTGT TTTGCAGTTA 11143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGTAATAG CACTGCAACC ACGTGTATAC GGATTAGCTT CAGCACCTGT TTTGCAGTTA 244 TAATACGACG CACCTCTTCT AGAACACGGA ACACTGTTAC TCTGCAGCGC ACCATAGCTT 11203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATACGACG CACCTCTTCT AGAACACGGA ACACTGTTAC TCTGCAGCGC ACCATAGCTT 304 ATATAATCAG TAGTTGCTAA TATACGCCTG TTGCTCTCCG AATCCATTTC GAATTCTCCG 11263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATAATCAG TAGTTGCTAA TATACGCCTG TTGCTCTCCG AATCCATTTC GAATTCTCCG 364 GCAGCCATAC ACTCCGCTAT CGAACCTTCA CAGCTATCGG CGGATTTCAT CGGAATCCAA 11323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCCATAC ACTCCGCTAT CGAACCTTCA CAGCTATCGG CGGATTTCAT CGGAATCCAA 424 CCGCTCACGT CGAAATCGCC GCCGGTAGCA TCGCCGGAGA TGATCAAAGC TGCGATCAAT 11383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCTCACGT CGAAATCGCC GCCGGTAGCA TCGCCGGAGA TGATCAAAGC TGCGATCAAT 484 AATGAAGA 11391 |||||||| AATGAAGA 492 hqPGS_C09HBa0099P03.1-2+_SGN-E304451- (10904 11391) ******************************************************************************** EST sequence 91 -strand 518 n (File: SGN-E307505-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT 61 TTNNNNGCCA AAGCACCACT GTCACTTTAT TTGAAATTGC AACTGAAAAG AAAAATACTC 121 CTACTTAAAG TATACAATAT AAACACTACG AAATTATTCA AAACAATTAC ACTTACTAAT 181 AATTAATTAA CATCGATTAA TTCGATCTTT AATTAATTTA ACTCCGGCAA CGAGTAATAG 241 CACTGCAACC ACGTGTATAC GGATTAGCTT CAGCACCTGT TTTGCAGTTA TAATACGACG 301 CACCTCTTCT AGAACACGGA ACACTGTTAC TCTGCAGCGC ACCATAGCTT ATATAATCAG 361 TAGTTGCTAA TATACGCCTG TTGCTCTCCG AATCCATTTC GAATTCTCCG GCAGCCATAC 421 ACTCCGCTAT CGAACCTTCA CAGCTATCGG CGGATTTCAT CGGAATCCAA CCGCTCACGT 481 CGAAATCGCC GCCGGTAGCA TCGCCGGAGC GGCACGAG Predicted gene structure (within gDNA segment 9650 to 12052): Exon 1 10920 11362 ( 443 n); cDNA 67 509 ( 443 n); score: 1.000 PPA cDNA 50 1 MATCH C09HBa0099P03.1-2+ SGN-E307505- 1.000 443 0.855 C PGS_C09HBa0099P03.1-2+_SGN-E307505- (10920 11362) Alignment (genomic DNA sequence = upper lines): GCCAAAGCAC CACTGTCACT TTATTTGAAA TTGCAACTGA AAAGAAAAAT ACTCCTACTT 10979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAAGCAC CACTGTCACT TTATTTGAAA TTGCAACTGA AAAGAAAAAT ACTCCTACTT 126 AAAGTATACA ATATAAACAC TACGAAATTA TTCAAAACAA TTACACTTAC TAATAATTAA 11039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTATACA ATATAAACAC TACGAAATTA TTCAAAACAA TTACACTTAC TAATAATTAA 186 TTAACATCGA TTAATTCGAT CTTTAATTAA TTTAACTCCG GCAACGAGTA ATAGCACTGC 11099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACATCGA TTAATTCGAT CTTTAATTAA TTTAACTCCG GCAACGAGTA ATAGCACTGC 246 AACCACGTGT ATACGGATTA GCTTCAGCAC CTGTTTTGCA GTTATAATAC GACGCACCTC 11159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACGTGT ATACGGATTA GCTTCAGCAC CTGTTTTGCA GTTATAATAC GACGCACCTC 306 TTCTAGAACA CGGAACACTG TTACTCTGCA GCGCACCATA GCTTATATAA TCAGTAGTTG 11219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAGAACA CGGAACACTG TTACTCTGCA GCGCACCATA GCTTATATAA TCAGTAGTTG 366 CTAATATACG CCTGTTGCTC TCCGAATCCA TTTCGAATTC TCCGGCAGCC ATACACTCCG 11279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATATACG CCTGTTGCTC TCCGAATCCA TTTCGAATTC TCCGGCAGCC ATACACTCCG 426 CTATCGAACC TTCACAGCTA TCGGCGGATT TCATCGGAAT CCAACCGCTC ACGTCGAAAT 11339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCGAACC TTCACAGCTA TCGGCGGATT TCATCGGAAT CCAACCGCTC ACGTCGAAAT 486 CGCCGCCGGT AGCATCGCCG GAG 11362 |||||||||| |||||||||| ||| CGCCGCCGGT AGCATCGCCG GAG 509 hqPGS_C09HBa0099P03.1-2+_SGN-E307505- (10920 11362) ******************************************************************************** EST sequence 98 -strand 455 n (File: SGN-E545021-) 1 TCGCCAAAGC ACCACTGTCA CTTTATTTGA AATTGCAACT GAAAAGAAAA ATACTCCTAC 61 TTAAAGTATA CAATATAAAC ACTACGAAAT TATTCAAAAC AATTACACTT ACTAATAATT 121 AATTAACATC GATTAATTCG ATCTTTAATT AATTTAACTC CGGCAACGAG TAATAGCACT 181 GCAACCACGT GTATACGGAT TAGCTTCAGC ACCTGTTTTG CAGTTATAAT ACGACGCACC 241 TCTTCTAGAA CACGGAACAC TGTTACTCTG CAGCGCACCA TAGCTTATAT AATCAGTAGT 301 TGCTAATATA CGCCTGTTGC TCTCCGAATC CATTTCGAAT TCTCCGGCAG CCATACACTC 361 CGCTATCGAA CCTTCACAGC TATCGGCGGA TTTCATCGGA ATCCAACCGC TCACGTCGAA 421 ATCGCCGCCG GTAGCATCGC CGGAGCGGCA CGAGG Predicted gene structure (within gDNA segment 10290 to 12062): Exon 1 10920 11362 ( 443 n); cDNA 3 445 ( 443 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E545021- 1.000 443 0.974 C PGS_C09HBa0099P03.1-2+_SGN-E545021- (10920 11362) Alignment (genomic DNA sequence = upper lines): GCCAAAGCAC CACTGTCACT TTATTTGAAA TTGCAACTGA AAAGAAAAAT ACTCCTACTT 10979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAAGCAC CACTGTCACT TTATTTGAAA TTGCAACTGA AAAGAAAAAT ACTCCTACTT 62 AAAGTATACA ATATAAACAC TACGAAATTA TTCAAAACAA TTACACTTAC TAATAATTAA 11039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTATACA ATATAAACAC TACGAAATTA TTCAAAACAA TTACACTTAC TAATAATTAA 122 TTAACATCGA TTAATTCGAT CTTTAATTAA TTTAACTCCG GCAACGAGTA ATAGCACTGC 11099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACATCGA TTAATTCGAT CTTTAATTAA TTTAACTCCG GCAACGAGTA ATAGCACTGC 182 AACCACGTGT ATACGGATTA GCTTCAGCAC CTGTTTTGCA GTTATAATAC GACGCACCTC 11159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCACGTGT ATACGGATTA GCTTCAGCAC CTGTTTTGCA GTTATAATAC GACGCACCTC 242 TTCTAGAACA CGGAACACTG TTACTCTGCA GCGCACCATA GCTTATATAA TCAGTAGTTG 11219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAGAACA CGGAACACTG TTACTCTGCA GCGCACCATA GCTTATATAA TCAGTAGTTG 302 CTAATATACG CCTGTTGCTC TCCGAATCCA TTTCGAATTC TCCGGCAGCC ATACACTCCG 11279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATATACG CCTGTTGCTC TCCGAATCCA TTTCGAATTC TCCGGCAGCC ATACACTCCG 362 CTATCGAACC TTCACAGCTA TCGGCGGATT TCATCGGAAT CCAACCGCTC ACGTCGAAAT 11339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCGAACC TTCACAGCTA TCGGCGGATT TCATCGGAAT CCAACCGCTC ACGTCGAAAT 422 CGCCGCCGGT AGCATCGCCG GAG 11362 |||||||||| |||||||||| ||| CGCCGCCGGT AGCATCGCCG GAG 445 hqPGS_C09HBa0099P03.1-2+_SGN-E545021- (10920 11362) ******************************************************************************** EST sequence 44 +strand 455 n (File: SGN-E549138+) 1 TTGCCAAGCA CCACTGTCAC TTTATTTTGA AATGCAACTG AAAAGAAAAA TACTCCTACT 61 TAAAGTATAC AATATAAACA CTACGAAATT ATTCAAAACA ATTACACTTA CTAATAATTA 121 ATTAACATCG ATTAATTCGA TCTTTAATTA ATTTAACTCC GGCAACGAGT AATAGCACTG 181 CAACCACGTG TATACGGATT AGCTTCAGCA CCTGTTTTGC AGTTATAATA CGACGCACCT 241 CTTCTAGAAC ACGGAACACT GTTACTCTGC AGCGCACCAT AGCTTATATA ATCAGTAGTT 301 GCTAATATAC GCCTGTTGCT CTCCGAATCC ATTTCGAATT CTCCGGCAGC CATACACTCC 361 GCTATCGAAC CTTCACAGCT ATCGGCGGAT TTCATCGGAA TCCAACCGCT CACGTCGAAA 421 TCGCCGCCGG TAGCATCGCC GGAGCGGCAC GAGGT Predicted gene structure (within gDNA segment 10274 to 12082): Exon 1 10924 11362 ( 439 n); cDNA 6 444 ( 439 n); score: 0.993 MATCH C09HBa0099P03.1-2+ SGN-E549138+ 0.993 439 0.965 C PGS_C09HBa0099P03.1-2+_SGN-E549138+ (10924 11362) Alignment (genomic DNA sequence = upper lines): AAGCACCACT GTCACTTTAT TTGAAATTGC AACTGAAAAG AAAAATACTC CTACTTAAAG 10983 |||||||||| |||||||||| || || ||| |||||||||| |||||||||| |||||||||| AAGCACCACT GTCACTTTAT TTTGAAATGC AACTGAAAAG AAAAATACTC CTACTTAAAG 65 TATACAATAT AAACACTACG AAATTATTCA AAACAATTAC ACTTACTAAT AATTAATTAA 11043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACAATAT AAACACTACG AAATTATTCA AAACAATTAC ACTTACTAAT AATTAATTAA 125 CATCGATTAA TTCGATCTTT AATTAATTTA ACTCCGGCAA CGAGTAATAG CACTGCAACC 11103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGATTAA TTCGATCTTT AATTAATTTA ACTCCGGCAA CGAGTAATAG CACTGCAACC 185 ACGTGTATAC GGATTAGCTT CAGCACCTGT TTTGCAGTTA TAATACGACG CACCTCTTCT 11163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGTATAC GGATTAGCTT CAGCACCTGT TTTGCAGTTA TAATACGACG CACCTCTTCT 245 AGAACACGGA ACACTGTTAC TCTGCAGCGC ACCATAGCTT ATATAATCAG TAGTTGCTAA 11223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACACGGA ACACTGTTAC TCTGCAGCGC ACCATAGCTT ATATAATCAG TAGTTGCTAA 305 TATACGCCTG TTGCTCTCCG AATCCATTTC GAATTCTCCG GCAGCCATAC ACTCCGCTAT 11283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATACGCCTG TTGCTCTCCG AATCCATTTC GAATTCTCCG GCAGCCATAC ACTCCGCTAT 365 CGAACCTTCA CAGCTATCGG CGGATTTCAT CGGAATCCAA CCGCTCACGT CGAAATCGCC 11343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACCTTCA CAGCTATCGG CGGATTTCAT CGGAATCCAA CCGCTCACGT CGAAATCGCC 425 GCCGGTAGCA TCGCCGGAG 11362 |||||||||| ||||||||| GCCGGTAGCA TCGCCGGAG 444 hqPGS_C09HBa0099P03.1-2+_SGN-E549138+ (10924 11362) ******************************************************************************** EST sequence 2 -strand 643 n (File: SGN-E211987-) 1 CAAAATAAAC CAAAAAAAAG TNCTATTAAG TAAGGCTGTT TAAAATCGAA TCAAAATCGA 61 TAAGTTGAAT CGATAAAAAA GTTATTGGTT TATAGTATTG GGTTATTGGT TTAGTGATTT 121 TGATAATGGT TTTGATTTTT TTTTGTTATC GGGTTATCGA TTCTTAACGG TTTAAAGTTT 181 TTTTTTTTAA CGGATTAACC GATAACCCGA TAGTAAATTA AATATTTATA TTTATACCAT 241 TTTTGTATAT AAAGTTCTCG ACTTAGAGTT TAATTTCCTA CTTTTATTTT TGATTGTCTC 301 AAATACTTGA TTATTCTACG ATGTAAAAGT GTTTGCTTTT GAGCAAGATG TAACTTGTGA 361 ACTCAAGTGC ATGGTTTATT TGGTTTGTCA CTTTGTTTCT AAGTGATTTT CAATATTTTT 421 TCTTTTCGAT CAAATCTTAA CGGTTAAACC GATAACCGAA TCGATAACGA TCAAAAACCG 481 ATAAACCAAT AATCGATAAG CCAATATCTT AATGGTTCTA TAATGGTTTA GCATCACTAC 541 AAATCGATAA CTAATAAGCC AACCCAATAA ACTTTAAAGT CGAACCGAAT CAACCGATCG 601 ATACACAGCC CTACTATCAA GTGCTTGAAA TACTGGAATT ATG Predicted gene structure (within gDNA segment 15646 to 11061): Exon 1 14364 13919 ( 446 n); cDNA 34 482 ( 449 n); score: 0.900 Intron 1 13918 13876 ( 43 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0) Exon 2 13875 13853 ( 23 n); cDNA 483 505 ( 23 n); score: 0.870 Intron 2 13852 13209 ( 644 n); Pd: 0.000 (s: 0), Pa: 0.965 (s: 0) Exon 3 13208 13195 ( 14 n); cDNA 506 518 ( 13 n); score: 0.714 MATCH C09HBa0099P03.1-2- SGN-E211987- 0.900 483 0.751 C PGS_C09HBa0099P03.1-2-_SGN-E211987- (14364 13919,13875 13853,13208 13195) Alignment (genomic DNA sequence = upper lines): GGCCGTTCAA AATTGAATTG AAACCGATAA GTCGAACTGA TAAAAAAGTT ATTGATTTAT 14305 ||| ||| || ||| |||| ||| |||||| || ||| || |||||||||| |||| ||||| GGCTGTTTAA AATCGAATCA AAATCGATAA GTTGAATCGA TAAAAAAGTT ATTGGTTTAT 93 AGTATTGGGT TATTGGTTTA GTGGTTTTGA TAACGGTTTT GATTTTTTTT TGTTATCGGG 14245 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||||||| |||||||||| AGTATTGGGT TATTGGTTTA GTGATTTTGA TAATGGTTTT GATTTTTTTT TGTTATCGGG 153 TTATCGGTTC TTAACGGTTT AAAG--TTTT TTCTTAACGG GTTAATCGAT AACTCGATAG 14187 |||||| ||| |||||||||| |||| |||| || ||||||| |||| |||| ||| |||||| TTATCGATTC TTAACGGTTT AAAGTTTTTT TTTTTAACGG ATTAACCGAT AACCCGATAG 213 TAAATTAAAT AATTATATTT ATACCA-TTT TGTATATAAA GTTCTCGACT TAGAGTTTAA 14128 |||||||||| | |||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TAAATTAAAT ATTTATATTT ATACCATTTT TGTATATAAA GTTCTCGACT TAGAGTTTAA 273 TTTCCTACTT TTATTTTTAA TTGTCTCAAA CACTTGATTA TTCTACAATG TGAAAGTGTT 14068 |||||||||| |||||||| | |||||||||| ||||||||| |||||| ||| | |||||||| TTTCCTACTT TTATTTTTGA TTGTCTCAAA TACTTGATTA TTCTACGATG TAAAAGTGTT 333 TGCTTTTGAG CGAGATGTAA CTTGTGAACT CAAGTACATG GTTTATTTGG TTTGTCACCT 14008 |||||||||| | |||||||| |||||||||| ||||| |||| |||||||||| |||||||| | TGCTTTTGAG CAAGATGTAA CTTGTGAACT CAAGTGCATG GTTTATTTGG TTTGTCACTT 393 TGTTTCTAAG TGATTTTTAA TATTTTTTTG TTTGTGTCAA ATCTTAACGA TTAAATCGAT 13948 |||||||||| ||||||| || |||||||| ||| |||| ||||||||| ||||| |||| TGTTTCTAAG TGATTTTCAA TATTTTTTCT TTTCGATCAA ATCTTAACGG TTAAACCGAT 453 AGCCGAACCG ATAACGATAA AAAACTGATA ACTCAATATC TTAATGGTTC TATCACGGTT 13888 | ||||| || |||||||| | ||||| ||| AACCGAATCG ATAACGATCA AAAACCGAT. .......... .......... .......... 482 TAGCATCTCT ACAAACTGAT AATCAATAAG CCAATTCGAT AGACTTTAAA ATCAAATCGA 13828 |||| || |||| ||||| ||||| .......... ..AAACCAAT AATCGATAAG CCAAT..... .......... .......... 505 ACCAATCGAT ACATAGCCCT ATATACTACT ATTAACCATA ACATTATTTA GAACATGTTT 13768 .......... .......... .......... .......... .......... .......... 505 GAAGTCGGTG AAAAAATTGT TTGGACTCTA TAAATAATAC AATGTTTTTC TTTTTGGATT 13708 .......... .......... .......... .......... .......... .......... 505 AGCTTTCTCG TACCTTGATT AATTTTACGG AATATCTATC ACATTCCGCT ATAAATAAAT 13648 .......... .......... .......... .......... .......... .......... 505 ATCAGTTAAC TCTGTCCACT AAAACTAAGA CAAATTGAAA AAATTTATTA CTGAGAAAAC 13588 .......... .......... .......... .......... .......... .......... 505 CAATATTAAG CAATTTTGCC TTCTCTTTGA TTTTTGGCCT AATATTACTC TCACTATTTG 13528 .......... .......... .......... .......... .......... .......... 505 AAAAAGTGAA AAGTTTTTTT TTTTCCTAAA ATGTTTGTAC AAAAAAGAAA ATCTCTCAGA 13468 .......... .......... .......... .......... .......... .......... 505 GAAAAAAATA TGCGAGTGAA TTACAAAATC AATTCTCGTT GAGTTGAAGT TTTTTTTTTT 13408 .......... .......... .......... .......... .......... .......... 505 TTAAAAAAAA TAAAATAAAT TTAAACACAT GGAGTATATC CATTTTGCAT TGGAGCTACA 13348 .......... .......... .......... .......... .......... .......... 505 TATATAATAA AGAATAAAAA CGAAACAATT TGCTAAAGAT TAAGTATGAA AAAAGATATT 13288 .......... .......... .......... .......... .......... .......... 505 AAGATAACAA AGAAAACATA ATTAATTAAG TTGCCTATTA TAATAATAAT ATAATAATTG 13228 .......... .......... .......... .......... .......... .......... 505 ACATCATTTT CTTTGGTAGG TTTTGAAAGG TTC 13195 | || || || ||| .......... .........A TCTT-AATGG TTC 518 hqPGS_C09HBa0099P03.1-2-_SGN-E211987- (14364 13919,13875 13853) ******************************************************************************** EST sequence 66 +strand 505 n (File: SGN-E228234+) 1 ATTCCTCGAC TTGGAGTTTA ATTTCCTACT TTTATTTTTG GTTGTCTCAA ACACTTGATT 61 ATTCTACGAT GTAAAAGTGC TTGCTTTTGA GCAAGATGTA ACTTGTGAAC TCAAGTGCAT 121 GGTTTATTTG GTTTGTCACC TTGTTTCTAC GTGATTTTCA ATATTTTTTC TTTTGGGTCA 181 AATCTTAACG GTTAAACCGA TAACCGAACA GATAACGATC AAAAATCGAT AAACCAATAA 241 CCGATAAGCC AATATCTTAA TGGTTCTATA ATGGTTTAGC ATCACTACAA ACGGATAACC 301 AATTAGTCAA CCCGATAAAC TTCAAAATCG AACCGAACCG GCCGATACAC AGCCCTAGTA 361 TGACTTGTGC TTGTTTTACA TTGTGGTGCC TCAGTAGGGA GGTGGCTCCT TTCATCAATT 421 TATGATTTTC ACTATCAAGT CCGTTTGGTA CTTCTATCAG TCGTATAAAG TTAGGAAGAC 481 ATGTCTCTTG TATCTATAAT ATATG Predicted gene structure (within gDNA segment 14865 to 9230): Exon 1 14144 13808 ( 337 n); cDNA 5 356 ( 352 n); score: 0.782 Intron 1 13807 11185 (2623 n); Pd: 0.000 (s: 0.78), Pa: 0.802 (s: 0) Exon 2 11184 11150 ( 35 n); cDNA 357 392 ( 36 n); score: 0.586 MATCH C09HBa0099P03.1-2- SGN-E228234+ 0.782 372 0.737 C PGS_C09HBa0099P03.1-2-_SGN-E228234+ (14144 13808,11184 11150) Alignment (genomic DNA sequence = upper lines): CTCGACTTAG AGTTTAATTT CCTACTTTTA TTTTTAATTG TCTCAAACAC TTGATTATTC 14085 |||||||| | |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| CTCGACTTGG AGTTTAATTT CCTACTTTTA TTTTTGGTTG TCTCAAACAC TTGATTATTC 64 TACAATGTGA AAGTGTTTGC TTTTGAGCGA GATGTAACTT GTGAACTCAA GTACATGGTT 14025 ||| |||| | ||||| |||| |||||||| | |||||||||| |||||||||| || ||||||| TACGATGTAA AAGTGCTTGC TTTTGAGCAA GATGTAACTT GTGAACTCAA GTGCATGGTT 124 TATTTGGTTT GTCACCTTGT TTCTAAGTGA TTTTTAATAT TTTTTTGTTT GTGTCAAATC 13965 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||| ||| | |||||||| TATTTGGTTT GTCACCTTGT TTCTACGTGA TTTTCAATAT TTTTTCTTTT GGGTCAAATC 184 TTAACGATTA AATCGATAGC CGAAC----- -CGAT----A A-CGAT-AA- -AA-AACTGA 13920 |||||| ||| || ||||| | ||||| |||| | | |||| || || ||| || TTAACGGTTA AACCGATAAC CGAACAGATA ACGATCAAAA ATCGATAAAC CAATAACCGA 244 TAACTCAATA TCTTAATGGT TCTATCACGG TTTAGCATCT CTACAAACTG ATAATCAATA 13860 ||| ||||| |||||||||| ||||| | || ||||||||| |||||||| | |||| |||| TAAGCCAATA TCTTAATGGT TCTATAATGG TTTAGCATCA CTACAAACGG ATAACCAATT 304 AGCCAATTCG ATAGACTTTA AAATCAAATC GAACCAATCG ATACATAGCC CTATATACTA 13800 || ||| || ||| |||| | ||||| || | ||||| || ||||| |||| || AGTCAACCCG ATAAACTTCA AAATCGAACC GAACCGGCCG ATACACAGCC CT........ 356 CTATTAACCA TAACATTATT TAGAACATGT TTGAAGTCGG TGAAAAAATT GTTTGGACTC 13740 .......... .......... .......... .......... .......... .......... 356 TATAAATAAT ACAATGTTTT TCTTTTTGGA TTAGCTTTCT CGTACCTTGA TTAATTTTAC 13680 .......... .......... .......... .......... .......... .......... 356 GGAATATCTA TCACATTCCG CTATAAATAA ATATCAGTTA ACTCTGTCCA CTAAAACTAA 13620 .......... .......... .......... .......... .......... .......... 356 GACAAATTGA AAAAATTTAT TACTGAGAAA ACCAATATTA AGCAATTTTG CCTTCTCTTT 13560 .......... .......... .......... .......... .......... .......... 356 GATTTTTGGC CTAATATTAC TCTCACTATT TGAAAAAGTG AAAAGTTTTT TTTTTTCCTA 13500 .......... .......... .......... .......... .......... .......... 356 AAATGTTTGT ACAAAAAAGA AAATCTCTCA GAGAAAAAAA TATGCGAGTG AATTACAAAA 13440 .......... .......... .......... .......... .......... .......... 356 TCAATTCTCG TTGAGTTGAA GTTTTTTTTT TTTTAAAAAA AATAAAATAA ATTTAAACAC 13380 .......... .......... .......... .......... .......... .......... 356 ATGGAGTATA TCCATTTTGC ATTGGAGCTA CATATATAAT AAAGAATAAA AACGAAACAA 13320 .......... .......... .......... .......... .......... .......... 356 TTTGCTAAAG ATTAAGTATG AAAAAAGATA TTAAGATAAC AAAGAAAACA TAATTAATTA 13260 .......... .......... .......... .......... .......... .......... 356 AGTTGCCTAT TATAATAATA ATATAATAAT TGACATCATT TTCTTTGGTA GGTTTTGAAA 13200 .......... .......... .......... .......... .......... .......... 356 GGTTCATCTA TTTTGATGAT GACTTGAACT TTCCAACAGC AATGAGTAAC GCGTTTGAAC 13140 .......... .......... .......... .......... .......... .......... 356 TGGTAAATAA ACGAAACCCA TTACCAAAGA AGCTTCATTT TTCATTTGAA TTTAATATCA 13080 .......... .......... .......... .......... .......... .......... 356 TATTATTATT ATTATTATAT CCATTGAAAT TAATATTATT TCTTCTCCGA CCATAATAAT 13020 .......... .......... .......... .......... .......... .......... 356 ACTTGATTTG CCTTACGTCC ACTATCATTT TATATTATGA TTAGGTCTAA GATTAGGACA 12960 .......... .......... .......... .......... .......... .......... 356 ACTAAACTCT TTTACTAAAT CAATATGACC ATATACTTCT AATAATAAAC TCTACTTTCC 12900 .......... .......... .......... .......... .......... .......... 356 CCTAAATTTC ATTATATTTT ATTTTTCAAA TTATAATGAA ACTAAGTTTT AATATAAAAA 12840 .......... .......... .......... .......... .......... .......... 356 AAGAAATTGT TCATATTTAA TGTATATACT AGATGCTCAG AATATACATT ATTCAAATAA 12780 .......... .......... .......... .......... .......... .......... 356 TCGAGATGCA CACAAAATGA TCTGAACACT ATTAATATAA TAAAATTACA TAGAAGACAT 12720 .......... .......... .......... .......... .......... .......... 356 GATTTTCTAT AAAAAAAATT TAAGTGAGAC CTTATATACC TTTATTCTTG GATTTCTTAT 12660 .......... .......... .......... .......... .......... .......... 356 TATTGTAATT AGCAACACGT TACGTTATTG ATACAAGTGG TAACATCATG TGCCTTCATA 12600 .......... .......... .......... .......... .......... .......... 356 TGGTGAAATA GTTTTCGAGA ATGTTGGGAT TATAACGACA ATGATGAATC CTTTGGATCA 12540 .......... .......... .......... .......... .......... .......... 356 CAACTATTAA CTATTTTCCC ACTATAAAAT CTCAACTTTA CACTTAAATC CTTCCCACAT 12480 .......... .......... .......... .......... .......... .......... 356 AATTATATAC CAAGGAAAAT TAGTTTCACA TAGAAAAATT ATATAAAATA TACAAGTTGA 12420 .......... .......... .......... .......... .......... .......... 356 AAATTACTTT TATATATATT AAATTTTAAA TATCTTTAAT TAAGTTTCGC GACTTTATCA 12360 .......... .......... .......... .......... .......... .......... 356 TTGCCTTTTC CGCAATATAT ATCTATATTA TAGTATACAA AATGTTTATT ACTCTAAAAA 12300 .......... .......... .......... .......... .......... .......... 356 ATAATTTTCA TCCTACCAAG TACCGACCAC ACTTGATGTT TAAAATATAC GGAGAGCTTA 12240 .......... .......... .......... .......... .......... .......... 356 TTTGGATTGA CTTTAAAAAA TAGCTTTTAA GTAATAAATA AATAAAAATA AAATAATTTT 12180 .......... .......... .......... .......... .......... .......... 356 TAAGTTAAAA ATAAAATAAA ATTCTAACTT AAACAACTTG TAAATCAAAA AATAAAAAGT 12120 .......... .......... .......... .......... .......... .......... 356 ATGAAAAGGC CTACTTTTCA TTTTTAACTT TTTAAAAGTC ATTTTAAATT AATTTTAAGT 12060 .......... .......... .......... .......... .......... .......... 356 TATTTATAAT TTTATCTAAC GCTCTTAATA ATTAAAAAAT GACTTAAAAA TTGATTTGAT 12000 .......... .......... .......... .......... .......... .......... 356 AAACTTTTAA ATCAATTCAA ATAGGCTACG AGTCAAATAT ATTTTGTACA TGTTATTTAT 11940 .......... .......... .......... .......... .......... .......... 356 ATTTTGAGAA TGGCACTTTG GTAAATACAG GCAACATGGA CACCATTTCA CGAGAAAGGC 11880 .......... .......... .......... .......... .......... .......... 356 CAAAAATATA GTACTATTCC TAATCCCGCC ATATTGTCGT GGTGCTAAAA ACAGTAAGAA 11820 .......... .......... .......... .......... .......... .......... 356 TATACCAACA ACATGGGTTG CGTGCGATTG TTTCGCTCTT AATCAGAGAT TTTATATATA 11760 .......... .......... .......... .......... .......... .......... 356 TAAAAATATT ATTAACGATA TTTAATAAGT AAGAATATAT CAAAAATATG AATTGTGCGC 11700 .......... .......... .......... .......... .......... .......... 356 TGAGTATTTC ACTTTTAATC AAAGATTTTA TATATAAAAA AATATCATTA ATAATATTTA 11640 .......... .......... .......... .......... .......... .......... 356 ATATTATATA ATTTAAATTT AATGGAATTT TAATGTGTTG GAAAATTTAA ATTACAGTGG 11580 .......... .......... .......... .......... .......... .......... 356 GAATATGGCA GCACCAGTAG TAGTAGTTAG AACATACAAA AATAAAAAAA AAAATCAAGT 11520 .......... .......... .......... .......... .......... .......... 356 TGTTGTATCT CTCTATTGAT ATATATATAT ATATATATGA GTAAGAGAGA AGGAAGATAA 11460 .......... .......... .......... .......... .......... .......... 356 CGCACCGATC AGCATTGAAA AATTTATCAA CAATGGCTGC GAATTCCTTT TGTTCCATTT 11400 .......... .......... .......... .......... .......... .......... 356 TCATCATCTC TTCATTATTG ATCGCAGCTT TGATCATCTC CGGCGATGCT ACCGGCGGCG 11340 .......... .......... .......... .......... .......... .......... 356 ATTTCGACGT GAGCGGTTGG ATTCCGATGA AATCCGCCGA TAGCTGTGAA GGTTCGATAG 11280 .......... .......... .......... .......... .......... .......... 356 CGGAGTGTAT GGCTGCCGGA GAATTCGAAA TGGATTCGGA GAGCAACAGG CGTATATTAG 11220 .......... .......... .......... .......... .......... .......... 356 CAACTACTGA TTATATAAGC TATGGTGCGC TGCAGAGTAA CAGTGTTCCG TGTTCTAGA- 11161 |||| | | | | |||| || | .......... .......... .......... .....AGTAT GACTTGTGCT TGTTTTACAT 381 AGAGGTGCGT C 11150 | ||||| | | TGTGGTGCCT C 392 hqPGS_C09HBa0099P03.1-2-_SGN-E228234+ (14144 13808) ******************************************************************************** EST sequence 100 +strand 504 n (File: SGN-E240450+) 1 ATTCCTCTTC TTGGAGTTTA ATTTCCTACT TTTATTTTTG GTTGTCTCAA ACACTTGATT 61 ATTCTACGAT GTAAAAGTGC TTGCTTTTGA GCAAGATGTA ACTTGTGAAC TCAAGTGCAT 121 GGTTTATTTG GTTTGTCACC TTGTTTCTAC GTGATTTTCA ATATTTTTTC TTTTGGGTCA 181 AATCTTAACG GTTAAACCGA TAACCGAACA GATAACGATC AAAAATCGAT AAACCAATAA 241 CCGATAAGCC AATATCTTAA TGGTTCTATA ATGGTTTAGC ATCACTACAA ACGGATAACC 301 AATTAGTCAA CCCGATAAAC TTCAAAATCG AACCGAACCG GCCGATACAC AGCCCTAGTA 361 TGACTTGTGC TTGTTTTACA TTGTGGTGCC TCAGTAGGGA GGTGGCTCCT TTCATCAATT 421 TATGATTNTC ACTATCAAGT CCGTTTGGTA CTTCTATCAG TCGTATAAAG TTAGGAAGAC 481 ATGTCTCTTG GATCTATAAT ATAT Predicted gene structure (within gDNA segment 14865 to 9840): Exon 1 14144 13808 ( 337 n); cDNA 5 356 ( 352 n); score: 0.776 Intron 1 13807 11185 (2623 n); Pd: 0.000 (s: 0.78), Pa: 0.802 (s: 0) Exon 2 11184 11150 ( 35 n); cDNA 357 392 ( 36 n); score: 0.586 MATCH C09HBa0099P03.1-2- SGN-E240450+ 0.776 372 0.738 C PGS_C09HBa0099P03.1-2-_SGN-E240450+ (14144 13808,11184 11150) Alignment (genomic DNA sequence = upper lines): CTCGACTTAG AGTTTAATTT CCTACTTTTA TTTTTAATTG TCTCAAACAC TTGATTATTC 14085 ||| ||| | |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| CTCTTCTTGG AGTTTAATTT CCTACTTTTA TTTTTGGTTG TCTCAAACAC TTGATTATTC 64 TACAATGTGA AAGTGTTTGC TTTTGAGCGA GATGTAACTT GTGAACTCAA GTACATGGTT 14025 ||| |||| | ||||| |||| |||||||| | |||||||||| |||||||||| || ||||||| TACGATGTAA AAGTGCTTGC TTTTGAGCAA GATGTAACTT GTGAACTCAA GTGCATGGTT 124 TATTTGGTTT GTCACCTTGT TTCTAAGTGA TTTTTAATAT TTTTTTGTTT GTGTCAAATC 13965 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||| ||| | |||||||| TATTTGGTTT GTCACCTTGT TTCTACGTGA TTTTCAATAT TTTTTCTTTT GGGTCAAATC 184 TTAACGATTA AATCGATAGC CGAAC----- -CGAT----A A-CGAT-AA- -AA-AACTGA 13920 |||||| ||| || ||||| | ||||| |||| | | |||| || || ||| || TTAACGGTTA AACCGATAAC CGAACAGATA ACGATCAAAA ATCGATAAAC CAATAACCGA 244 TAACTCAATA TCTTAATGGT TCTATCACGG TTTAGCATCT CTACAAACTG ATAATCAATA 13860 ||| ||||| |||||||||| ||||| | || ||||||||| |||||||| | |||| |||| TAAGCCAATA TCTTAATGGT TCTATAATGG TTTAGCATCA CTACAAACGG ATAACCAATT 304 AGCCAATTCG ATAGACTTTA AAATCAAATC GAACCAATCG ATACATAGCC CTATATACTA 13800 || ||| || ||| |||| | ||||| || | ||||| || ||||| |||| || AGTCAACCCG ATAAACTTCA AAATCGAACC GAACCGGCCG ATACACAGCC CT........ 356 CTATTAACCA TAACATTATT TAGAACATGT TTGAAGTCGG TGAAAAAATT GTTTGGACTC 13740 .......... .......... .......... .......... .......... .......... 356 TATAAATAAT ACAATGTTTT TCTTTTTGGA TTAGCTTTCT CGTACCTTGA TTAATTTTAC 13680 .......... .......... .......... .......... .......... .......... 356 GGAATATCTA TCACATTCCG CTATAAATAA ATATCAGTTA ACTCTGTCCA CTAAAACTAA 13620 .......... .......... .......... .......... .......... .......... 356 GACAAATTGA AAAAATTTAT TACTGAGAAA ACCAATATTA AGCAATTTTG CCTTCTCTTT 13560 .......... .......... .......... .......... .......... .......... 356 GATTTTTGGC CTAATATTAC TCTCACTATT TGAAAAAGTG AAAAGTTTTT TTTTTTCCTA 13500 .......... .......... .......... .......... .......... .......... 356 AAATGTTTGT ACAAAAAAGA AAATCTCTCA GAGAAAAAAA TATGCGAGTG AATTACAAAA 13440 .......... .......... .......... .......... .......... .......... 356 TCAATTCTCG TTGAGTTGAA GTTTTTTTTT TTTTAAAAAA AATAAAATAA ATTTAAACAC 13380 .......... .......... .......... .......... .......... .......... 356 ATGGAGTATA TCCATTTTGC ATTGGAGCTA CATATATAAT AAAGAATAAA AACGAAACAA 13320 .......... .......... .......... .......... .......... .......... 356 TTTGCTAAAG ATTAAGTATG AAAAAAGATA TTAAGATAAC AAAGAAAACA TAATTAATTA 13260 .......... .......... .......... .......... .......... .......... 356 AGTTGCCTAT TATAATAATA ATATAATAAT TGACATCATT TTCTTTGGTA GGTTTTGAAA 13200 .......... .......... .......... .......... .......... .......... 356 GGTTCATCTA TTTTGATGAT GACTTGAACT TTCCAACAGC AATGAGTAAC GCGTTTGAAC 13140 .......... .......... .......... .......... .......... .......... 356 TGGTAAATAA ACGAAACCCA TTACCAAAGA AGCTTCATTT TTCATTTGAA TTTAATATCA 13080 .......... .......... .......... .......... .......... .......... 356 TATTATTATT ATTATTATAT CCATTGAAAT TAATATTATT TCTTCTCCGA CCATAATAAT 13020 .......... .......... .......... .......... .......... .......... 356 ACTTGATTTG CCTTACGTCC ACTATCATTT TATATTATGA TTAGGTCTAA GATTAGGACA 12960 .......... .......... .......... .......... .......... .......... 356 ACTAAACTCT TTTACTAAAT CAATATGACC ATATACTTCT AATAATAAAC TCTACTTTCC 12900 .......... .......... .......... .......... .......... .......... 356 CCTAAATTTC ATTATATTTT ATTTTTCAAA TTATAATGAA ACTAAGTTTT AATATAAAAA 12840 .......... .......... .......... .......... .......... .......... 356 AAGAAATTGT TCATATTTAA TGTATATACT AGATGCTCAG AATATACATT ATTCAAATAA 12780 .......... .......... .......... .......... .......... .......... 356 TCGAGATGCA CACAAAATGA TCTGAACACT ATTAATATAA TAAAATTACA TAGAAGACAT 12720 .......... .......... .......... .......... .......... .......... 356 GATTTTCTAT AAAAAAAATT TAAGTGAGAC CTTATATACC TTTATTCTTG GATTTCTTAT 12660 .......... .......... .......... .......... .......... .......... 356 TATTGTAATT AGCAACACGT TACGTTATTG ATACAAGTGG TAACATCATG TGCCTTCATA 12600 .......... .......... .......... .......... .......... .......... 356 TGGTGAAATA GTTTTCGAGA ATGTTGGGAT TATAACGACA ATGATGAATC CTTTGGATCA 12540 .......... .......... .......... .......... .......... .......... 356 CAACTATTAA CTATTTTCCC ACTATAAAAT CTCAACTTTA CACTTAAATC CTTCCCACAT 12480 .......... .......... .......... .......... .......... .......... 356 AATTATATAC CAAGGAAAAT TAGTTTCACA TAGAAAAATT ATATAAAATA TACAAGTTGA 12420 .......... .......... .......... .......... .......... .......... 356 AAATTACTTT TATATATATT AAATTTTAAA TATCTTTAAT TAAGTTTCGC GACTTTATCA 12360 .......... .......... .......... .......... .......... .......... 356 TTGCCTTTTC CGCAATATAT ATCTATATTA TAGTATACAA AATGTTTATT ACTCTAAAAA 12300 .......... .......... .......... .......... .......... .......... 356 ATAATTTTCA TCCTACCAAG TACCGACCAC ACTTGATGTT TAAAATATAC GGAGAGCTTA 12240 .......... .......... .......... .......... .......... .......... 356 TTTGGATTGA CTTTAAAAAA TAGCTTTTAA GTAATAAATA AATAAAAATA AAATAATTTT 12180 .......... .......... .......... .......... .......... .......... 356 TAAGTTAAAA ATAAAATAAA ATTCTAACTT AAACAACTTG TAAATCAAAA AATAAAAAGT 12120 .......... .......... .......... .......... .......... .......... 356 ATGAAAAGGC CTACTTTTCA TTTTTAACTT TTTAAAAGTC ATTTTAAATT AATTTTAAGT 12060 .......... .......... .......... .......... .......... .......... 356 TATTTATAAT TTTATCTAAC GCTCTTAATA ATTAAAAAAT GACTTAAAAA TTGATTTGAT 12000 .......... .......... .......... .......... .......... .......... 356 AAACTTTTAA ATCAATTCAA ATAGGCTACG AGTCAAATAT ATTTTGTACA TGTTATTTAT 11940 .......... .......... .......... .......... .......... .......... 356 ATTTTGAGAA TGGCACTTTG GTAAATACAG GCAACATGGA CACCATTTCA CGAGAAAGGC 11880 .......... .......... .......... .......... .......... .......... 356 CAAAAATATA GTACTATTCC TAATCCCGCC ATATTGTCGT GGTGCTAAAA ACAGTAAGAA 11820 .......... .......... .......... .......... .......... .......... 356 TATACCAACA ACATGGGTTG CGTGCGATTG TTTCGCTCTT AATCAGAGAT TTTATATATA 11760 .......... .......... .......... .......... .......... .......... 356 TAAAAATATT ATTAACGATA TTTAATAAGT AAGAATATAT CAAAAATATG AATTGTGCGC 11700 .......... .......... .......... .......... .......... .......... 356 TGAGTATTTC ACTTTTAATC AAAGATTTTA TATATAAAAA AATATCATTA ATAATATTTA 11640 .......... .......... .......... .......... .......... .......... 356 ATATTATATA ATTTAAATTT AATGGAATTT TAATGTGTTG GAAAATTTAA ATTACAGTGG 11580 .......... .......... .......... .......... .......... .......... 356 GAATATGGCA GCACCAGTAG TAGTAGTTAG AACATACAAA AATAAAAAAA AAAATCAAGT 11520 .......... .......... .......... .......... .......... .......... 356 TGTTGTATCT CTCTATTGAT ATATATATAT ATATATATGA GTAAGAGAGA AGGAAGATAA 11460 .......... .......... .......... .......... .......... .......... 356 CGCACCGATC AGCATTGAAA AATTTATCAA CAATGGCTGC GAATTCCTTT TGTTCCATTT 11400 .......... .......... .......... .......... .......... .......... 356 TCATCATCTC TTCATTATTG ATCGCAGCTT TGATCATCTC CGGCGATGCT ACCGGCGGCG 11340 .......... .......... .......... .......... .......... .......... 356 ATTTCGACGT GAGCGGTTGG ATTCCGATGA AATCCGCCGA TAGCTGTGAA GGTTCGATAG 11280 .......... .......... .......... .......... .......... .......... 356 CGGAGTGTAT GGCTGCCGGA GAATTCGAAA TGGATTCGGA GAGCAACAGG CGTATATTAG 11220 .......... .......... .......... .......... .......... .......... 356 CAACTACTGA TTATATAAGC TATGGTGCGC TGCAGAGTAA CAGTGTTCCG TGTTCTAGA- 11161 |||| | | | | |||| || | .......... .......... .......... .....AGTAT GACTTGTGCT TGTTTTACAT 381 AGAGGTGCGT C 11150 | ||||| | | TGTGGTGCCT C 392 hqPGS_C09HBa0099P03.1-2-_SGN-E240450+ (14144 13808) ******************************************************************************** EST sequence 107 +strand 440 n (File: SGN-E241852+) 1 ATTCCTCGAC TTGGAGTTTA ATTTCCTACT TTTATTTTTG GTTGTCTCAA ACACTTGATT 61 ATTCTACGAT GTAAAAGTGC TTGCTTTTGA GCAAGATGTA ACTTGTGAAC TCAAGTGCAT 121 GGTTTATTTG GTTTGTCACC TTGTTTCTAC GTGATTTTCA ATATTTTTTC TTTTGGGTCA 181 AATCTTAACG GTTAAACCGA TAACCGAACA GATAACGATC AAAAATCGAT AAACCAATAA 241 CCGATAAGCC AATATCTTAA TGGTTCTATA ATGGTTTAGC ATCACTACAA ACGGATAACC 301 AATTAGTCAA CCCGATAAAC TTCAAAATCG AACCGAACCG GCCGATACAC AGCCCTAGTA 361 TGACTTGTGC TTGTTTTACA TTGTGGTGCC TCAGTAGGGA GGTGGCTCCT TTCATCAATT 421 TATGATTTTC ACTATCAAGT Predicted gene structure (within gDNA segment 14865 to 10480): Exon 1 14144 13808 ( 337 n); cDNA 5 356 ( 352 n); score: 0.782 MATCH C09HBa0099P03.1-2- SGN-E241852+ 0.782 337 0.766 C PGS_C09HBa0099P03.1-2-_SGN-E241852+ (14144 13808) Alignment (genomic DNA sequence = upper lines): CTCGACTTAG AGTTTAATTT CCTACTTTTA TTTTTAATTG TCTCAAACAC TTGATTATTC 14085 |||||||| | |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| CTCGACTTGG AGTTTAATTT CCTACTTTTA TTTTTGGTTG TCTCAAACAC TTGATTATTC 64 TACAATGTGA AAGTGTTTGC TTTTGAGCGA GATGTAACTT GTGAACTCAA GTACATGGTT 14025 ||| |||| | ||||| |||| |||||||| | |||||||||| |||||||||| || ||||||| TACGATGTAA AAGTGCTTGC TTTTGAGCAA GATGTAACTT GTGAACTCAA GTGCATGGTT 124 TATTTGGTTT GTCACCTTGT TTCTAAGTGA TTTTTAATAT TTTTTTGTTT GTGTCAAATC 13965 |||||||||| |||||||||| ||||| |||| |||| ||||| ||||| ||| | |||||||| TATTTGGTTT GTCACCTTGT TTCTACGTGA TTTTCAATAT TTTTTCTTTT GGGTCAAATC 184 TTAACGATTA AATCGATAGC CGAAC----- -CGAT----A A-CGAT-AA- -AA-AACTGA 13920 |||||| ||| || ||||| | ||||| |||| | | |||| || || ||| || TTAACGGTTA AACCGATAAC CGAACAGATA ACGATCAAAA ATCGATAAAC CAATAACCGA 244 TAACTCAATA TCTTAATGGT TCTATCACGG TTTAGCATCT CTACAAACTG ATAATCAATA 13860 ||| ||||| |||||||||| ||||| | || ||||||||| |||||||| | |||| |||| TAAGCCAATA TCTTAATGGT TCTATAATGG TTTAGCATCA CTACAAACGG ATAACCAATT 304 AGCCAATTCG ATAGACTTTA AAATCAAATC GAACCAATCG ATACATAGCC CT 13808 || ||| || ||| |||| | ||||| || | ||||| || ||||| |||| || AGTCAACCCG ATAAACTTCA AAATCGAACC GAACCGGCCG ATACACAGCC CT 356 hqPGS_C09HBa0099P03.1-2-_SGN-E241852+ (14144 13808) ******************************************************************************** EST sequence 42 -strand 766 n (File: SGN-E369471-) 1 TTATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATTA CTTTAATAAC 61 TATATATAAG ATGCTAGGAA AGCAATTATT CGTCAACGTT CCAACTTTTC TAGGCAGGGG 121 TAATATAGTA ATTTACTAAA TGTTGTGTAA AGGTATTATT GTACTTATTT GCTTCGTTGT 181 TGAGCTTTTT TATTTATTGA ACATATAAGT CCAATAATTG ATGGAGCCAT ATCATTGGAT 241 GGTGGGATCA TAAAGAGTCC TGACATATTT TCCCTAGGCA AAAGGGAAGT ACAAATCAAA 301 TTTCCAAAGA GTTCTGGAAG GTTGTATCTA CGTGAAAGCT ATTTTGGAAG TGAGATCCAG 361 ATGAAGGAGC TGAAGTGAGA AAGGGTAAGA TGTGTGGAAG ATTTAGAGAG AGAGCAAACA 421 TTGCTGACCA ATGCAAAGAA CAACTTTGAA ATAAGGAAAG AGGAGTTTTT CAAGTTTCTT 481 TCACAGAGCT CATCCTATCT CTGAGGGTTA TATACTTGAG TAGGGCTGTT CAAAACCGAA 541 TCTAAACCGA TAAGCCGAAC CGATAAAAAA GTTATTGGTT TATATCATTG GGTTATTGGT 601 TTAGTGGTTT TGATGTCGGT TTTGATTTTT TTTGTTATCG GGTATCGGTT CTTAACGGTT 661 TAAAGTTTTT TCTTAATGGG TTAACCGATA ACCTGATAGT AAATTAAATA ATAATATTTA 721 TACCATTTTG TATATAAAGT TTTCGACTTA GAGTTTAAAA AAAAAA Predicted gene structure (within gDNA segment 20546 to 13448): Exon 1 19868 19862 ( 7 n); cDNA 400 406 ( 7 n); score: 0.857 Intron 1 19861 18022 (1840 n); Pd: 0.926 (s: 0), Pa: 0.999 (s: 0.56) Exon 2 18021 17972 ( 50 n); cDNA 407 455 ( 49 n); score: 0.560 Intron 2 17971 17893 ( 79 n); Pd: 0.900 (s: 0.56), Pa: 0.000 (s: 0) Exon 3 17892 17886 ( 7 n); cDNA 456 462 ( 7 n); score: 0.857 Intron 3 17885 16472 (1414 n); Pd: 0.996 (s: 0), Pa: 0.968 (s: 0) Exon 4 16471 16457 ( 15 n); cDNA 463 477 ( 15 n); score: 0.667 Intron 4 16456 16106 ( 351 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0.55) Exon 5 16105 16059 ( 47 n); cDNA 478 523 ( 46 n); score: 0.553 Intron 5 16058 14365 (1694 n); Pd: 0.000 (s: 0.55), Pa: 0.161 (s: 0.86) Exon 6 14364 14129 ( 236 n); cDNA 524 757 ( 234 n); score: 0.915 MATCH C09HBa0099P03.1-2- SGN-E369471- 0.853 362 0.473 C PGS_C09HBa0099P03.1-2-_SGN-E369471- (19868 19862,18021 17972,17892 17886,16471 16457,16105 16059,14364 14129) Alignment (genomic DNA sequence = upper lines): GATTGAGGTT CGTGACCATA AAATTTTTGT TTATTTATAT ATATTTATTT TTTTAACAAA 19809 |||| || GATTTAG... .......... .......... .......... .......... .......... 406 GATATACTTC AATTGTAGCT ACGCCACTAG TTGTAGATAT CAAATAAGTT AAGTAAGTAA 19749 .......... .......... .......... .......... .......... .......... 406 ATAAAAGGGA TTCGTTTTAA TTTATGCAAT TTAATTTGAT AAATGACAAT AGAGGTTTTG 19689 .......... .......... .......... .......... .......... .......... 406 ATTTCGAGTT TTAATATCCC CATCATTTGA TCATTTGCAG TCATATTATT CCCTTCTATT 19629 .......... .......... .......... .......... .......... .......... 406 TGTTACCTAA TTTTCCTCAA GTGTTCTCCA AGAGTTTGTT GTTGGGTATT TGACCTGAGT 19569 .......... .......... .......... .......... .......... .......... 406 TTCTTAGCAT AAATAGGTTA TAAAGTTTCC GTTTTTGAGT AGTCATTTTC TTGTAGAAAA 19509 .......... .......... .......... .......... .......... .......... 406 AAGTTTAGTA CTCTATAAAT TGAGGCTCGT TCCTTCTAAC TTAATCAACA TTCACAATGT 19449 .......... .......... .......... .......... .......... .......... 406 AGTCATAGGG GGCTTTGAGA GTTTGGTTAG GGCAAGTGTT CTCCAAGAAT CTGCAACTTG 19389 .......... .......... .......... .......... .......... .......... 406 AGCAAGTTTA CTAGTTTGAC ATGTCTATTC AAAATTTTCC TGTTTTGAGT AAATCTTATG 19329 .......... .......... .......... .......... .......... .......... 406 GTAACAGTTG TACTCAGAGG TGTATCTAGG ATTTTTAGTT TATGAGTTTT GAATATATCA 19269 .......... .......... .......... .......... .......... .......... 406 TTTTACACAT AGCAAATGAA CTTTTTGAAA CATAACTACG AGGTTTGAGC CAAAGCTACA 19209 .......... .......... .......... .......... .......... .......... 406 GGGTTTTGTT GAACCAAATG GCTGAAGGGG TGGCTCTGCT CCTACACTTA ACACCCACCC 19149 .......... .......... .......... .......... .......... .......... 406 TAATCATGCT TTATTGAAAA TTGGTCGTGA GTGGACTTTT GACAGTGACT TGAAAAATAG 19089 .......... .......... .......... .......... .......... .......... 406 GAAGGTACTT TCAGATTTTA TCTGTAACAA CAACTAGATT TCAAAATGCG TATGACTGGA 19029 .......... .......... .......... .......... .......... .......... 406 ACTTTATAAT AATGCTAAGA TTGTAAATTT GACATCAAAC AAGAACATGT GTCACATGAA 18969 .......... .......... .......... .......... .......... .......... 406 TTGAGATAGA TGGACTAGGA AGGAGTATAA TTGGAAAGTA AATTTCTGTC TAAAACTGAA 18909 .......... .......... .......... .......... .......... .......... 406 AGTGTACCAA AAGATTGATG ATTCAAAGAT TTTCCTACTC AACAAGTTTT TCTGTTAAAT 18849 .......... .......... .......... .......... .......... .......... 406 CTTGTGCACA TCAGAAGCTT GAATGTCTGA GTTATAGTTT CTTGTGTATC TCTATTTGAT 18789 .......... .......... .......... .......... .......... .......... 406 CCTGCATAGC AAGCTTAAGG ATAGTATCTA GTAGGTTGAA TCACAATTAT TACTGGAAAA 18729 .......... .......... .......... .......... .......... .......... 406 GCTATCAATT TGTTAATGTC ATTGATCAAA TCTTCTTTTT GCTTTTAATC AACAATTTGT 18669 .......... .......... .......... .......... .......... .......... 406 CTTTTGTGAA ATTACCTATT TAAAATCTAT TCAGTTGGCT TTTTTTTTTT TGGTTATTTC 18609 .......... .......... .......... .......... .......... .......... 406 TCACTTAATT ATGTTTCCAA TAATCTGCAT TTTGGTTTGT GTACAAACCT CTTGCAGTTG 18549 .......... .......... .......... .......... .......... .......... 406 GTTACAATTT CAATCTGCAA TATGGGCGAC ATGCACCTTA TTGTTCACTA AATTTGATCT 18489 .......... .......... .......... .......... .......... .......... 406 TTCCAGGTGA AAGATGCTCT TGTGCTATTC GACACAGCAC TTACTTTAAA TCCCAACCCT 18429 .......... .......... .......... .......... .......... .......... 406 GAGGAGGCTC AAGCTGCATT TTATAACAAA GCATGTTGCC ATGCCTACAG GTATATCTCT 18369 .......... .......... .......... .......... .......... .......... 406 CCTTTGCCTC TTTCATGGTT GAATTGATTA AGCTGGATCT TATAAACGGT TATTTGTTTG 18309 .......... .......... .......... .......... .......... .......... 406 AAATCATGTG AGACATTGAG AAAAAAAACA TATTTTCGAC TTTCTTCTCG TGTAAAATGC 18249 .......... .......... .......... .......... .......... .......... 406 AAGTAAAGGA ATTTAAAATT TCTTAATCAC AGTTTTAGCT TTGTGAACTG TAAGTTGAGG 18189 .......... .......... .......... .......... .......... .......... 406 CACCTGTAGT TTCTTAATCA CAGTTCTTAG CTTAATTGTT TCATTGGAAG GATCACTAAA 18129 .......... .......... .......... .......... .......... .......... 406 ACCAATGTTG AATCTTCAAT GAGCGTCTAC TATACTTATT TATTCTTCTT CACTCTTTTA 18069 .......... .......... .......... .......... .......... .......... 406 TTATTTCTCT ATTTGTTTAA TAATTTATTT TTCTTTATTA ACTCAAGGGG GGAAGGAAAG 18009 | | || ||| .......... .......... .......... .......... .......AGA GAGAGCAAAC 419 AAAGCTGCTG AGTGTTTACG CACTGCTTTG AAAGAGTATA ACCTTAAGTT TGGCACAATC 17949 | |||| | || | | || ||||| ||| | ATTGCTGACC AATG-CAAAG AACAACTTTG AAATAAG... .......... .......... 455 TTAAATGATC CAGATTTGGC TTCCTTCAGA GCATTGCCTG AATTTAAGGA ACTACAGGAA 17889 | || .......... .......... .......... .......... .......... ......GAAA 459 GAGGTTTGTT TCCAGCTGTT GATATAGTTC TTTAGTTTTC GTCATGCTTG GATGTCTGAA 17829 ||| GAG....... .......... .......... .......... .......... .......... 462 TTTAATTCAG CTCCTTACCA CATTGACTAT GTTACAGTAT CTCCAGAACT TCGTAATGCT 17769 .......... .......... .......... .......... .......... .......... 462 CTAGCTTTGC TTCATTGTTT CTGAATCTCA TAGTCTTCTA TTTACCTCAC AGGCTAGGTT 17709 .......... .......... .......... .......... .......... .......... 462 AGGAGGGGAA GACATAGGTT ACAGTTTCCG TAGAGACCTT AAGCTCATCA GTGAGGTACA 17649 .......... .......... .......... .......... .......... .......... 462 AGCACCGTTT AGGGGGGTCA GAAGATTCTT TTATGTGGCA TTCATTGCTG CTGCTGGAAT 17589 .......... .......... .......... .......... .......... .......... 462 TTCTACATTT TTCACTATAC CCAGGTTAAT CCGTGCAATT CAAGGTGGAG ATGGTGCTCC 17529 .......... .......... .......... .......... .......... .......... 462 TGATTTAGGG GCGACTGCAG GAAATGCTGC TATAAATGTC GCTGGTAAAT AAGGACTACC 17469 .......... .......... .......... .......... .......... .......... 462 TTTGCTACGA ATCATTTAGT TCACTTCTAA AGTTCTAGAA ATTATTTTTG CTGGCTATAT 17409 .......... .......... .......... .......... .......... .......... 462 TAACTTGCGC TTTTAAATGA AAAGAACTGT TTCTCAAAAA TGATTAACCT CTTGAACCAG 17349 .......... .......... .......... .......... .......... .......... 462 CACTCTGCAG GTATTGCTGT TTTTGTGGCT TTGTTGTTTT GGGACAACAA AAAAGAGGAG 17289 .......... .......... .......... .......... .......... .......... 462 GAACAGCTTG CACAAATATT GCGTGATGAA ACACTATCAA GGCTGCCTTT GCGCCTTTCA 17229 .......... .......... .......... .......... .......... .......... 462 ACTGATAGGA TTGTTGAACT CGTCCAGCTA AGAGACACCG TGAGGCCTGT TAGTGAGACA 17169 .......... .......... .......... .......... .......... .......... 462 ATTTCCCCTT TACTCTTCCT GTCAATTTCT AGAAGTTGAG TGGAAAACGT CCGGAGTCCT 17109 .......... .......... .......... .......... .......... .......... 462 TCAATTTTAC CTTGAAGAAT GAGATGTCCT GTATGAGATG TCCTGTCACT AGTCTAGTTC 17049 .......... .......... .......... .......... .......... .......... 462 TCGTTGCCAT GTATCCTGCT TAACAGATCA AAAGATATTG TTTACCTCCT TCGTTTGAAG 16989 .......... .......... .......... .......... .......... .......... 462 AATCCATTTC CATCACATTT ACATTGTCGG AGGATAATTA AAGAGAAAAA GTCAGTAACA 16929 .......... .......... .......... .......... .......... .......... 462 TATTTTGCTA GGTTTGCAAC AAATGTCTTT GTTTCATGAG CAAAAAGCTA TCCCATTACG 16869 .......... .......... .......... .......... .......... .......... 462 TATTTGTTCT CTCTGTCTCT CTTTTTCCTT ATTAAAAATT CCGGACTTGA ACATATTCTC 16809 .......... .......... .......... .......... .......... .......... 462 TCCTTGTATT TGAAGTTTGA CCAATTTGCT TGTTAGGTTA TTTTGGCTGG AAAAAAGGAG 16749 .......... .......... .......... .......... .......... .......... 462 ACAGTCTCTC TGGCTATGAG AAATGCTGAG AAATTCCGCA CTGAGCTTCT TAAACGCGGG 16689 .......... .......... .......... .......... .......... .......... 462 GTCCTTCTAG TTCCTGTTAT TTGGGGTGAA GGTAGGGAAA CAAAAATAGA GAAGAAAGGT 16629 .......... .......... .......... .......... .......... .......... 462 TTTGGTGTTT CGCAAAAGGC AGTCGCTTCC CTCCCATCCA TAGGGGTAAG ATTGAAGATT 16569 .......... .......... .......... .......... .......... .......... 462 TTTAGTAGCA CTTAATGATC ATTTTAAACA ACATGATGCT ATTGCATGCA CATCAAGTCT 16509 .......... .......... .......... .......... .......... .......... 462 CAAAGTGCAA AATATATATT TTTTTTACAT GCTACAGGAT TTTTGAAAGT CGTTTCTTGT 16449 || |||| |||| .......... .......... .......... .......GAG TTTTTCAAGT TT........ 477 TGCTCAACAA GCATAAGACG ATAATCTTAA TGGTGCATTT ATCTCATTCA GGTTCTTATT 16389 .......... .......... .......... .......... .......... .......... 477 TTTGTCCAAT CTGTAGGAAG ATTTTGACCA AAGAACTCAG TCAATAATTG CAAAATCAAA 16329 .......... .......... .......... .......... .......... .......... 477 ACTGAAGTCA GAGATCCGGT TCAAGGCGGA GGTCGTTTCA CCTGCAGAGT GGGAAAGGTA 16269 .......... .......... .......... .......... .......... .......... 477 TATCTACCTG TTCCAAATAC TCTTGAAACT ACTCATCCCG TCATGGTCAT GTGCATTTAT 16209 .......... .......... .......... .......... .......... .......... 477 GTTTGTGCCA CTTTAATTTA TTGTACATCC CGTTACACAG TTTGATCGAC TGAATTGTTT 16149 .......... .......... .......... .......... .......... .......... 477 TCCCTTGTAC CAGATCTATT GTCTGACATC AAATCTATTT CAGGTGGATA AGGGATCAAC 16089 | || | ||| | .......... .......... .......... .......... ...CTTTCAC AGAGCTCATC 494 AGAAGTCTGA AGGTGTTACT CCTGGTGAAG ATGTCTACAT TATACTTCGT CTAGATGGTC 16029 | ||||| ||| || | || | | || CTATCTCTGA GGGTTATA-T ACTTGAGTAG .......... .......... .......... 523 GTGTTCGACG ATCAGGAAAG GTCAGTACTT GTTGCTGCAA TTCTCTTCTT TGGTCCATTA 15969 .......... .......... .......... .......... .......... .......... 523 ATCCTGACTC AGTTATATAC TTATATGCAT AGATAATCAG CACATAAATT GATCATGACA 15909 .......... .......... .......... .......... .......... .......... 523 TAACATAGAT GACTGAATCC ATAAAAGTAT AATTTACTAC TCATACGGGT TAATTCTTCG 15849 .......... .......... .......... .......... .......... .......... 523 ATTTTAATAT CGACCAACTC TGCAGGGGAT GCCTGACTGG GCTCAAATTT TAAAGGAACT 15789 .......... .......... .......... .......... .......... .......... 523 GCCTCCAATG GAAGCAATAT TAAGCAAGCT AGAAAGATAA TACAAGTTCC TCTTGCTGAG 15729 .......... .......... .......... .......... .......... .......... 523 TGCTAAAATC TTTTCACTAC CTGGTGTATT TTCGGTCAGT CTCCTTACTT GAAATATAAA 15669 .......... .......... .......... .......... .......... .......... 523 AGGCACTAAT TGATGCCTGT TGAGCTTGTC TGTTTTACGT TTCCATTTTT TCACGAACAT 15609 .......... .......... .......... .......... .......... .......... 523 ATACTGTACT ATAATTCTAT AAATTGATAT TGATATTTGC CAGATGAATA TCCAAAGGAT 15549 .......... .......... .......... .......... .......... .......... 523 ATGAAATCCC ATAGGAAATA GAAATCCAAA CAATGGAACT CATAGTTATT CATCTACTGC 15489 .......... .......... .......... .......... .......... .......... 523 TGAAGCTAGA GGTGGATCCA TGATTTTAAT TCAATATATA CGAATTATCA CTATATGACA 15429 .......... .......... .......... .......... .......... .......... 523 CTTTTTATGA CACTGGATCT GATATTTAGC TTTAGTTAGC ACTTTTATCA TTGAAGGTTG 15369 .......... .......... .......... .......... .......... .......... 523 GTTTGTTGAA CAACCTTTGG CGGAAAACTA TATTGCATGC ATATATAGGT CAAATTATCA 15309 .......... .......... .......... .......... .......... .......... 523 ATCTCACTCA CACAAAAACA CACATTAAAC CTTGAATATA CTTAGTGAAA TTTCTGGCTT 15249 .......... .......... .......... .......... .......... .......... 523 CGCAAGTGCA TACAAGTGAA TCCACCTGTG CTTGAAGTCT TGGTTTTTGT TACCTTATTG 15189 .......... .......... .......... .......... .......... .......... 523 AAGGTTGGGA CAATCAACTG GACAAAGAAG GAAAAAACAA GAGAAAATAT ATCTAATGGG 15129 .......... .......... .......... .......... .......... .......... 523 CTAGGAAGTA ATTTCTGCTA TGTAGTTGAC TTCTTTGAGA AATATTATTA TTATTTATTT 15069 .......... .......... .......... .......... .......... .......... 523 ATTTGCAGAC GTTCAAACTG AGTTTTAGTT TATAATTTGT TAGTACATCG ATCTGTTTTA 15009 .......... .......... .......... .......... .......... .......... 523 ATATTAACCT AAGTCTTTTT TATTAAAAAA CGAGAAAATA AGAAACTATA TAAGCTGGAA 14949 .......... .......... .......... .......... .......... .......... 523 TGGTTCCAAC AAGAAAGATA TTCTGAACCT ACTCCAATAA AAAAATACCA ATAACTTTGC 14889 .......... .......... .......... .......... .......... .......... 523 CAGGAAGACT TTTTCATATT AAACTACAGT ATAAGGTGAA GGCAGACCAT GATTTGAAGT 14829 .......... .......... .......... .......... .......... .......... 523 TCATGTATAT TAAATTTTAG TCTTTTTTGA GTGTTATCGA ATTCTAAATT AATAATCTAT 14769 .......... .......... .......... .......... .......... .......... 523 ACGTATTAAT AAATTGCTTG AAATCAAAAT TACTAAATTT TGTCGAACCG TCTTGGTTGA 14709 .......... .......... .......... .......... .......... .......... 523 ACTGTCTTGG TCGAAGAGAC CAAGATGATT GTGCATTATT CTATTCCTTT TAAAATTTGA 14649 .......... .......... .......... .......... .......... .......... 523 GTCCTTCCTT TGCCTGCACG GTCACTCTGC TTGATGCATT TATTTAAAAA AAAAAATTCA 14589 .......... .......... .......... .......... .......... .......... 523 GTACTCAAAT ATTTGTGTAA TTTTTAGTAT TAGATTATGA ATATTTTAAA ATCTCGAGAA 14529 .......... .......... .......... .......... .......... .......... 523 TAAATGTAAT GATTTACTAT TGTACAAGGC ACCTAGACAT ATTTTATTTC TAGTATTTCT 14469 .......... .......... .......... .......... .......... .......... 523 CCCGGGACTT TATTCTAAAG AGCAACCATG GTGTTAATTT CTTATTTTTG CTTATGTAAC 14409 .......... .......... .......... .......... .......... .......... 523 ATTTGACATA TTTTAAGCCT ATATAAAAAG TACTATACTA CTAGGGCCGT TCAAAATTGA 14349 ||| || |||||| || .......... .......... .......... .......... ....GGCTGT TCAAAACCGA 539 ATTGAAACCG ATAAGTCGAA CTGATAAAAA AGTTATTGAT TTATAGTATT GGGTTATTGG 14289 || |||||| ||||| |||| | |||||||| |||||||| | ||||| ||| |||||||||| ATCTAAACCG ATAAGCCGAA CCGATAAAAA AGTTATTGGT TTATATCATT GGGTTATTGG 599 TTTAGTGGTT TTGATAACGG TTTTGATTTT TTTTTGTTAT CGGGTTATCG GTTCTTAACG 14229 |||||||||| ||||| ||| |||||| ||| |||||||||| |||| ||||| |||||||||| TTTAGTGGTT TTGATGTCGG TTTTGA-TTT TTTTTGTTAT CGGG-TATCG GTTCTTAACG 657 GTTTAAAGTT TTTTCTTAAC GGGTTAATCG ATAACTCGAT AGTAAATTAA ATAATTATAT 14169 |||||||||| ||||||||| ||||||| || ||||| ||| |||||||||| ||||| |||| GTTTAAAGTT TTTTCTTAAT GGGTTAACCG ATAACCTGAT AGTAAATTAA ATAATAATAT 717 TTATACCATT TTGTATATAA AGTTCTCGAC TTAGAGTTTA 14129 |||||||||| |||||||||| |||| ||||| |||||||||| TTATACCATT TTGTATATAA AGTTTTCGAC TTAGAGTTTA 757 hqPGS_C09HBa0099P03.1-2-_SGN-E369471- (14364 14129) ******************************************************************************** EST sequence 43 -strand 403 n (File: SGN-E369089-) 1 AAGGAGCTAA AGTAAGAAAG GGTAAGATGT GTGGAAAATT AAAAAAGAGA GCAACCATTG 61 CTGCCCAATG CAAAGACCAA CTTTGAAATA AGGAAAGAGG AGTTTTTCAA GTTTCTTTCA 121 CAGAGCTCAT CCTATCTCTG AGGGTTATAT ACTTGAGTAG GGCTGTTCAA ACCCGAATCT 181 AAACCGATAA GCCAAACCGA TAAAAAAGTT ATTGGTTTAT ATCATTGGGT TATTGGTTTA 241 GTGGTTTTGA TGTCGGTTTT GATTTTTTTT GTTATCGGGT ATCGGTTCTT AACGGTTTAA 301 AGTTTTTTCT TAATGGGTTA ACCGATAACC TGATAGTAAA TTAAATAATA ATATTTATAC 361 CATTTTGTAT ATAAAGTTTT CAACTAAAAA AATAAAAAAA AAA Predicted gene structure (within gDNA segment 16916 to 13295): Exon 1 16098 16059 ( 40 n); cDNA 122 160 ( 39 n); score: 0.625 Intron 1 16058 14365 (1694 n); Pd: 0.000 (s: 0.62), Pa: 0.161 (s: 0.82) Exon 2 14364 14138 ( 227 n); cDNA 161 385 ( 225 n); score: 0.899 PPA cDNA 386 403 MATCH C09HBa0099P03.1-2- SGN-E369089- 0.899 267 0.663 C PGS_C09HBa0099P03.1-2-_SGN-E369089- (16098 16059,14364 14138) Alignment (genomic DNA sequence = upper lines): AGGGATCAAC AGAAGTCTGA AGGTGTTACT CCTGGTGAAG ATGTCTACAT TATACTTCGT 16039 || | ||| | | ||||| ||| || | || | | || AGAGCTCATC CTATCTCTGA GGGTTATA-T ACTTGAGTAG .......... .......... 160 CTAGATGGTC GTGTTCGACG ATCAGGAAAG GTCAGTACTT GTTGCTGCAA TTCTCTTCTT 15979 .......... .......... .......... .......... .......... .......... 160 TGGTCCATTA ATCCTGACTC AGTTATATAC TTATATGCAT AGATAATCAG CACATAAATT 15919 .......... .......... .......... .......... .......... .......... 160 GATCATGACA TAACATAGAT GACTGAATCC ATAAAAGTAT AATTTACTAC TCATACGGGT 15859 .......... .......... .......... .......... .......... .......... 160 TAATTCTTCG ATTTTAATAT CGACCAACTC TGCAGGGGAT GCCTGACTGG GCTCAAATTT 15799 .......... .......... .......... .......... .......... .......... 160 TAAAGGAACT GCCTCCAATG GAAGCAATAT TAAGCAAGCT AGAAAGATAA TACAAGTTCC 15739 .......... .......... .......... .......... .......... .......... 160 TCTTGCTGAG TGCTAAAATC TTTTCACTAC CTGGTGTATT TTCGGTCAGT CTCCTTACTT 15679 .......... .......... .......... .......... .......... .......... 160 GAAATATAAA AGGCACTAAT TGATGCCTGT TGAGCTTGTC TGTTTTACGT TTCCATTTTT 15619 .......... .......... .......... .......... .......... .......... 160 TCACGAACAT ATACTGTACT ATAATTCTAT AAATTGATAT TGATATTTGC CAGATGAATA 15559 .......... .......... .......... .......... .......... .......... 160 TCCAAAGGAT ATGAAATCCC ATAGGAAATA GAAATCCAAA CAATGGAACT CATAGTTATT 15499 .......... .......... .......... .......... .......... .......... 160 CATCTACTGC TGAAGCTAGA GGTGGATCCA TGATTTTAAT TCAATATATA CGAATTATCA 15439 .......... .......... .......... .......... .......... .......... 160 CTATATGACA CTTTTTATGA CACTGGATCT GATATTTAGC TTTAGTTAGC ACTTTTATCA 15379 .......... .......... .......... .......... .......... .......... 160 TTGAAGGTTG GTTTGTTGAA CAACCTTTGG CGGAAAACTA TATTGCATGC ATATATAGGT 15319 .......... .......... .......... .......... .......... .......... 160 CAAATTATCA ATCTCACTCA CACAAAAACA CACATTAAAC CTTGAATATA CTTAGTGAAA 15259 .......... .......... .......... .......... .......... .......... 160 TTTCTGGCTT CGCAAGTGCA TACAAGTGAA TCCACCTGTG CTTGAAGTCT TGGTTTTTGT 15199 .......... .......... .......... .......... .......... .......... 160 TACCTTATTG AAGGTTGGGA CAATCAACTG GACAAAGAAG GAAAAAACAA GAGAAAATAT 15139 .......... .......... .......... .......... .......... .......... 160 ATCTAATGGG CTAGGAAGTA ATTTCTGCTA TGTAGTTGAC TTCTTTGAGA AATATTATTA 15079 .......... .......... .......... .......... .......... .......... 160 TTATTTATTT ATTTGCAGAC GTTCAAACTG AGTTTTAGTT TATAATTTGT TAGTACATCG 15019 .......... .......... .......... .......... .......... .......... 160 ATCTGTTTTA ATATTAACCT AAGTCTTTTT TATTAAAAAA CGAGAAAATA AGAAACTATA 14959 .......... .......... .......... .......... .......... .......... 160 TAAGCTGGAA TGGTTCCAAC AAGAAAGATA TTCTGAACCT ACTCCAATAA AAAAATACCA 14899 .......... .......... .......... .......... .......... .......... 160 ATAACTTTGC CAGGAAGACT TTTTCATATT AAACTACAGT ATAAGGTGAA GGCAGACCAT 14839 .......... .......... .......... .......... .......... .......... 160 GATTTGAAGT TCATGTATAT TAAATTTTAG TCTTTTTTGA GTGTTATCGA ATTCTAAATT 14779 .......... .......... .......... .......... .......... .......... 160 AATAATCTAT ACGTATTAAT AAATTGCTTG AAATCAAAAT TACTAAATTT TGTCGAACCG 14719 .......... .......... .......... .......... .......... .......... 160 TCTTGGTTGA ACTGTCTTGG TCGAAGAGAC CAAGATGATT GTGCATTATT CTATTCCTTT 14659 .......... .......... .......... .......... .......... .......... 160 TAAAATTTGA GTCCTTCCTT TGCCTGCACG GTCACTCTGC TTGATGCATT TATTTAAAAA 14599 .......... .......... .......... .......... .......... .......... 160 AAAAAATTCA GTACTCAAAT ATTTGTGTAA TTTTTAGTAT TAGATTATGA ATATTTTAAA 14539 .......... .......... .......... .......... .......... .......... 160 ATCTCGAGAA TAAATGTAAT GATTTACTAT TGTACAAGGC ACCTAGACAT ATTTTATTTC 14479 .......... .......... .......... .......... .......... .......... 160 TAGTATTTCT CCCGGGACTT TATTCTAAAG AGCAACCATG GTGTTAATTT CTTATTTTTG 14419 .......... .......... .......... .......... .......... .......... 160 CTTATGTAAC ATTTGACATA TTTTAAGCCT ATATAAAAAG TACTATACTA CTAGGGCCGT 14359 ||| || .......... .......... .......... .......... .......... ....GGCTGT 166 TCAAAATTGA ATTGAAACCG ATAAGTCGAA CTGATAAAAA AGTTATTGAT TTATAGTATT 14299 ||||| || || |||||| ||||| | || | |||||||| |||||||| | ||||| ||| TCAAACCCGA ATCTAAACCG ATAAGCCAAA CCGATAAAAA AGTTATTGGT TTATATCATT 226 GGGTTATTGG TTTAGTGGTT TTGATAACGG TTTTGATTTT TTTTTGTTAT CGGGTTATCG 14239 |||||||||| |||||||||| ||||| ||| |||||| ||| |||||||||| |||| ||||| GGGTTATTGG TTTAGTGGTT TTGATGTCGG TTTTGA-TTT TTTTTGTTAT CGGG-TATCG 284 GTTCTTAACG GTTTAAAGTT TTTTCTTAAC GGGTTAATCG ATAACTCGAT AGTAAATTAA 14179 |||||||||| |||||||||| ||||||||| ||||||| || ||||| ||| |||||||||| GTTCTTAACG GTTTAAAGTT TTTTCTTAAT GGGTTAACCG ATAACCTGAT AGTAAATTAA 344 ATAATTATAT TTATACCATT TTGTATATAA AGTTCTCGAC T 14138 ||||| |||| |||||||||| |||||||||| |||| || || | ATAATAATAT TTATACCATT TTGTATATAA AGTTTTCAAC T 385 hqPGS_C09HBa0099P03.1-2-_SGN-E369089- (14364 14138) ******************************************************************************** EST sequence 17 -strand 531 n (File: SGN-E548311-) 1 CAAAAGGCAG TCGCTTCCCT CCCATCCATA GGGGAAGATT TTGACCAAAG AACTCAGTCA 61 ATAATTGCAA AATCAAAACT GAAGTCAGAG ATCCGGTTCA AGGCGGAGGT CGTTTCACCT 121 GCAGAGTGGG AAAGGTGGAT AAGGGATCAA CAGAAGTCTG AAGGTGTTAC TCCTGGTGAA 181 GATGTCTACA TTATACTTCG TCTAGATGGT CGTGTTCGAC GATCAGGAAA GGGGATGCCT 241 GACTGGGCTC AAATTTTAAA GGAACTGCCT CCAATGGAAG CAATATTAAG CAAGCTAGAA 301 AGATAATACA AGTTCCTCTT GCTGAGTGCT AAAATCTTTT CACTACCTGG TGTATTTTCG 361 GTCAGTCTCC TTACTTGAAA TATAAAAGGC ACTAATTGAT GCCTGTTGAG CTTGTCTGTT 421 TTACGTTTCC ATTTTTTCAC GAACATATAC TGTACTATAA TTCTATAAAT TGATATTGAT 481 ATTTGCCAGA TGAATATCCA AAGGATATGA AATCCCATAG GAAAAAAAAA A Predicted gene structure (within gDNA segment 17226 to 14861): Exon 1 16616 16584 ( 33 n); cDNA 1 33 ( 33 n); score: 1.000 Intron 1 16583 16373 ( 211 n); Pd: 0.996 (s: 0), Pa: 0.982 (s: 1.00) Exon 2 16372 16272 ( 101 n); cDNA 34 134 ( 101 n); score: 1.000 Intron 2 16271 16106 ( 166 n); Pd: 0.930 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 16105 16009 ( 97 n); cDNA 135 231 ( 97 n); score: 1.000 Intron 3 16008 15824 ( 185 n); Pd: 0.940 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 15823 15525 ( 299 n); cDNA 232 530 ( 299 n); score: 0.993 MATCH C09HBa0099P03.1-2- SGN-E548311- 0.996 530 0.998 C PGS_C09HBa0099P03.1-2-_SGN-E548311- (16616 16584,16372 16272,16105 16009,15823 15525) Alignment (genomic DNA sequence = upper lines): CAAAAGGCAG TCGCTTCCCT CCCATCCATA GGGGTAAGAT TGAAGATTTT TAGTAGCACT 16557 |||||||||| |||||||||| |||||||||| ||| CAAAAGGCAG TCGCTTCCCT CCCATCCATA GGG....... .......... .......... 33 TAATGATCAT TTTAAACAAC ATGATGCTAT TGCATGCACA TCAAGTCTCA AAGTGCAAAA 16497 .......... .......... .......... .......... .......... .......... 33 TATATATTTT TTTTACATGC TACAGGATTT TTGAAAGTCG TTTCTTGTTG CTCAACAAGC 16437 .......... .......... .......... .......... .......... .......... 33 ATAAGACGAT AATCTTAATG GTGCATTTAT CTCATTCAGG TTCTTATTTT TGTCCAATCT 16377 .......... .......... .......... .......... .......... .......... 33 GTAGGAAGAT TTTGACCAAA GAACTCAGTC AATAATTGCA AAATCAAAAC TGAAGTCAGA 16317 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GAAGAT TTTGACCAAA GAACTCAGTC AATAATTGCA AAATCAAAAC TGAAGTCAGA 89 GATCCGGTTC AAGGCGGAGG TCGTTTCACC TGCAGAGTGG GAAAGGTATA TCTACCTGTT 16257 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATCCGGTTC AAGGCGGAGG TCGTTTCACC TGCAGAGTGG GAAAG..... .......... 134 CCAAATACTC TTGAAACTAC TCATCCCGTC ATGGTCATGT GCATTTATGT TTGTGCCACT 16197 .......... .......... .......... .......... .......... .......... 134 TTAATTTATT GTACATCCCG TTACACAGTT TGATCGACTG AATTGTTTTC CCTTGTACCA 16137 .......... .......... .......... .......... .......... .......... 134 GATCTATTGT CTGACATCAA ATCTATTTCA GGTGGATAAG GGATCAACAG AAGTCTGAAG 16077 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGGATAAG GGATCAACAG AAGTCTGAAG 163 GTGTTACTCC TGGTGAAGAT GTCTACATTA TACTTCGTCT AGATGGTCGT GTTCGACGAT 16017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTACTCC TGGTGAAGAT GTCTACATTA TACTTCGTCT AGATGGTCGT GTTCGACGAT 223 CAGGAAAGGT CAGTACTTGT TGCTGCAATT CTCTTCTTTG GTCCATTAAT CCTGACTCAG 15957 |||||||| CAGGAAAG.. .......... .......... .......... .......... .......... 231 TTATATACTT ATATGCATAG ATAATCAGCA CATAAATTGA TCATGACATA ACATAGATGA 15897 .......... .......... .......... .......... .......... .......... 231 CTGAATCCAT AAAAGTATAA TTTACTACTC ATACGGGTTA ATTCTTCGAT TTTAATATCG 15837 .......... .......... .......... .......... .......... .......... 231 ACCAACTCTG CAGGGGATGC CTGACTGGGC TCAAATTTTA AAGGAACTGC CTCCAATGGA 15777 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGGATGC CTGACTGGGC TCAAATTTTA AAGGAACTGC CTCCAATGGA 278 AGCAATATTA AGCAAGCTAG AAAGATAATA CAAGTTCCTC TTGCTGAGTG CTAAAATCTT 15717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAATATTA AGCAAGCTAG AAAGATAATA CAAGTTCCTC TTGCTGAGTG CTAAAATCTT 338 TTCACTACCT GGTGTATTTT CGGTCAGTCT CCTTACTTGA AATATAAAAG GCACTAATTG 15657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACTACCT GGTGTATTTT CGGTCAGTCT CCTTACTTGA AATATAAAAG GCACTAATTG 398 ATGCCTGTTG AGCTTGTCTG TTTTACGTTT CCATTTTTTC ACGAACATAT ACTGTACTAT 15597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTGTTG AGCTTGTCTG TTTTACGTTT CCATTTTTTC ACGAACATAT ACTGTACTAT 458 AATTCTATAA ATTGATATTG ATATTTGCCA GATGAATATC CAAAGGATAT GAAATCCCAT 15537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTATAA ATTGATATTG ATATTTGCCA GATGAATATC CAAAGGATAT GAAATCCCAT 518 AGGAAATAGA AA 15525 |||||| | | || AGGAAAAAAA AA 530 hqPGS_C09HBa0099P03.1-2-_SGN-E548311- (16616 16584,16372 16272,16105 16009,15823 15525) ******************************************************************************** EST sequence 76 +strand 531 n (File: SGN-E539991+) 1 CAAAAGGCAG TCGCTTCCCT CCCATCCATA GGGGAAGATT TTGACCAAAG AACTCAGTCA 61 ATAATTGCAA AATCAAAACT GAAGTCAGAG ATCCGGTTCA AGGCGGAGGT CGTTTCACCT 121 GCAGAGTGGG AAAGGTGGAT AAGGGATCAA CAGAAGTCTG AAGGTGTTAC TCCTGGTGAA 181 GATGTCTACA TTATACTTCG TCTAGATGGT CGTGTTCGAC GATCAGGAAA GGGGATGCCT 241 GACTGGGCTC AAATTTTAAA GGAACTGCCT CCAATGGAAG CAATATTAAG CAAGCTAGAA 301 AGATAATACA AGTTCCTCTT GCTGAGTGCT AAAATCTTTT CACTACCTGG TGTATTTTCG 361 GTCAGTCTCC TTACTTGAAA TATAAAAGGC ACTAATTGAT GCCTGTTGAG CTTGTCTGTT 421 TTACGTTTCC ATTTTTTCAC GAACATATAC TGTACTATAA TTCTATAAAT TGATATTGAT 481 ATTTGCCAGA TGAATATCCA AAGGATATGA AATCCCATAG GAAAAAAAAA A Predicted gene structure (within gDNA segment 17216 to 14851): Exon 1 16616 16584 ( 33 n); cDNA 1 33 ( 33 n); score: 1.000 Intron 1 16583 16373 ( 211 n); Pd: 0.996 (s: 0), Pa: 0.982 (s: 1.00) Exon 2 16372 16272 ( 101 n); cDNA 34 134 ( 101 n); score: 1.000 Intron 2 16271 16106 ( 166 n); Pd: 0.930 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 16105 16009 ( 97 n); cDNA 135 231 ( 97 n); score: 1.000 Intron 3 16008 15824 ( 185 n); Pd: 0.940 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 15823 15525 ( 299 n); cDNA 232 530 ( 299 n); score: 0.993 MATCH C09HBa0099P03.1-2- SGN-E539991+ 0.996 530 0.998 C PGS_C09HBa0099P03.1-2-_SGN-E539991+ (16616 16584,16372 16272,16105 16009,15823 15525) Alignment (genomic DNA sequence = upper lines): CAAAAGGCAG TCGCTTCCCT CCCATCCATA GGGGTAAGAT TGAAGATTTT TAGTAGCACT 16557 |||||||||| |||||||||| |||||||||| ||| CAAAAGGCAG TCGCTTCCCT CCCATCCATA GGG....... .......... .......... 33 TAATGATCAT TTTAAACAAC ATGATGCTAT TGCATGCACA TCAAGTCTCA AAGTGCAAAA 16497 .......... .......... .......... .......... .......... .......... 33 TATATATTTT TTTTACATGC TACAGGATTT TTGAAAGTCG TTTCTTGTTG CTCAACAAGC 16437 .......... .......... .......... .......... .......... .......... 33 ATAAGACGAT AATCTTAATG GTGCATTTAT CTCATTCAGG TTCTTATTTT TGTCCAATCT 16377 .......... .......... .......... .......... .......... .......... 33 GTAGGAAGAT TTTGACCAAA GAACTCAGTC AATAATTGCA AAATCAAAAC TGAAGTCAGA 16317 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GAAGAT TTTGACCAAA GAACTCAGTC AATAATTGCA AAATCAAAAC TGAAGTCAGA 89 GATCCGGTTC AAGGCGGAGG TCGTTTCACC TGCAGAGTGG GAAAGGTATA TCTACCTGTT 16257 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GATCCGGTTC AAGGCGGAGG TCGTTTCACC TGCAGAGTGG GAAAG..... .......... 134 CCAAATACTC TTGAAACTAC TCATCCCGTC ATGGTCATGT GCATTTATGT TTGTGCCACT 16197 .......... .......... .......... .......... .......... .......... 134 TTAATTTATT GTACATCCCG TTACACAGTT TGATCGACTG AATTGTTTTC CCTTGTACCA 16137 .......... .......... .......... .......... .......... .......... 134 GATCTATTGT CTGACATCAA ATCTATTTCA GGTGGATAAG GGATCAACAG AAGTCTGAAG 16077 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGGATAAG GGATCAACAG AAGTCTGAAG 163 GTGTTACTCC TGGTGAAGAT GTCTACATTA TACTTCGTCT AGATGGTCGT GTTCGACGAT 16017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTACTCC TGGTGAAGAT GTCTACATTA TACTTCGTCT AGATGGTCGT GTTCGACGAT 223 CAGGAAAGGT CAGTACTTGT TGCTGCAATT CTCTTCTTTG GTCCATTAAT CCTGACTCAG 15957 |||||||| CAGGAAAG.. .......... .......... .......... .......... .......... 231 TTATATACTT ATATGCATAG ATAATCAGCA CATAAATTGA TCATGACATA ACATAGATGA 15897 .......... .......... .......... .......... .......... .......... 231 CTGAATCCAT AAAAGTATAA TTTACTACTC ATACGGGTTA ATTCTTCGAT TTTAATATCG 15837 .......... .......... .......... .......... .......... .......... 231 ACCAACTCTG CAGGGGATGC CTGACTGGGC TCAAATTTTA AAGGAACTGC CTCCAATGGA 15777 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGGATGC CTGACTGGGC TCAAATTTTA AAGGAACTGC CTCCAATGGA 278 AGCAATATTA AGCAAGCTAG AAAGATAATA CAAGTTCCTC TTGCTGAGTG CTAAAATCTT 15717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAATATTA AGCAAGCTAG AAAGATAATA CAAGTTCCTC TTGCTGAGTG CTAAAATCTT 338 TTCACTACCT GGTGTATTTT CGGTCAGTCT CCTTACTTGA AATATAAAAG GCACTAATTG 15657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACTACCT GGTGTATTTT CGGTCAGTCT CCTTACTTGA AATATAAAAG GCACTAATTG 398 ATGCCTGTTG AGCTTGTCTG TTTTACGTTT CCATTTTTTC ACGAACATAT ACTGTACTAT 15597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTGTTG AGCTTGTCTG TTTTACGTTT CCATTTTTTC ACGAACATAT ACTGTACTAT 458 AATTCTATAA ATTGATATTG ATATTTGCCA GATGAATATC CAAAGGATAT GAAATCCCAT 15537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCTATAA ATTGATATTG ATATTTGCCA GATGAATATC CAAAGGATAT GAAATCCCAT 518 AGGAAATAGA AA 15525 |||||| | | || AGGAAAAAAA AA 530 hqPGS_C09HBa0099P03.1-2-_SGN-E539991+ (16616 16584,16372 16272,16105 16009,15823 15525) ******************************************************************************** EST sequence 101 +strand 531 n (File: SGN-E288647+) 1 AAAAGGCAGT CGCTTCCCTC CCATCCATAG GGGAAGATTT TGACCAAAGA ACTCAGTCAA 61 TAATTGCAAA ATCAAAACTG AAGTCAGAGA TCCGGTTCAA GGCGGAGGTC GTTTCACCTG 121 CAGAGTGGGA AAGGTGGATA AGGGATCAAC AGAAGTCTGA AGGTGTTACT CCTGGTGAAG 181 ATGTCTACAT TATACTTCGT CTAGATGGTC GTGTTCGACG ATCAGGAAAG GGGATGCCTG 241 ACTGGGCTCA AATTTTAAAG GAACTGCCTC CAATGGAAGC AATATTAAGC AAGCTAGAAA 301 GATAATACAA GTTCCTCTTG CTGAGTGCTA AAATCTTTTC ACTACCTGGT GTATTTTCGG 361 TCAGTCTCCT TACTTGAAAT ATAAAAGGCA CTAATTGATG CCTGTTGAGC TTGTCTGTTT 421 TACGTTTCCA TTTTTTCACG AACATATACT GTACTATAAT TCTATTAAAT TGATATTGAT 481 ATTTGCCAGA TGAATATCCA AAGGATATGA AATCCCATAG GAAAAAATAA A Predicted gene structure (within gDNA segment 17215 to 14851): Exon 1 16615 16584 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 16583 16373 ( 211 n); Pd: 0.996 (s: 0), Pa: 0.982 (s: 1.00) Exon 2 16372 16272 ( 101 n); cDNA 33 133 ( 101 n); score: 1.000 Intron 2 16271 16106 ( 166 n); Pd: 0.930 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 16105 16009 ( 97 n); cDNA 134 230 ( 97 n); score: 1.000 Intron 3 16008 15824 ( 185 n); Pd: 0.940 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 4 15823 15525 ( 299 n); cDNA 231 530 ( 300 n); score: 0.982 MATCH C09HBa0099P03.1-2- SGN-E288647+ 0.989 529 0.996 C PGS_C09HBa0099P03.1-2-_SGN-E288647+ (16615 16584,16372 16272,16105 16009,15823 15525) Alignment (genomic DNA sequence = upper lines): AAAAGGCAGT CGCTTCCCTC CCATCCATAG GGGTAAGATT GAAGATTTTT AGTAGCACTT 16556 |||||||||| |||||||||| |||||||||| || AAAAGGCAGT CGCTTCCCTC CCATCCATAG GG........ .......... .......... 32 AATGATCATT TTAAACAACA TGATGCTATT GCATGCACAT CAAGTCTCAA AGTGCAAAAT 16496 .......... .......... .......... .......... .......... .......... 32 ATATATTTTT TTTACATGCT ACAGGATTTT TGAAAGTCGT TTCTTGTTGC TCAACAAGCA 16436 .......... .......... .......... .......... .......... .......... 32 TAAGACGATA ATCTTAATGG TGCATTTATC TCATTCAGGT TCTTATTTTT GTCCAATCTG 16376 .......... .......... .......... .......... .......... .......... 32 TAGGAAGATT TTGACCAAAG AACTCAGTCA ATAATTGCAA AATCAAAACT GAAGTCAGAG 16316 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAAGATT TTGACCAAAG AACTCAGTCA ATAATTGCAA AATCAAAACT GAAGTCAGAG 89 ATCCGGTTCA AGGCGGAGGT CGTTTCACCT GCAGAGTGGG AAAGGTATAT CTACCTGTTC 16256 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATCCGGTTCA AGGCGGAGGT CGTTTCACCT GCAGAGTGGG AAAG...... .......... 133 CAAATACTCT TGAAACTACT CATCCCGTCA TGGTCATGTG CATTTATGTT TGTGCCACTT 16196 .......... .......... .......... .......... .......... .......... 133 TAATTTATTG TACATCCCGT TACACAGTTT GATCGACTGA ATTGTTTTCC CTTGTACCAG 16136 .......... .......... .......... .......... .......... .......... 133 ATCTATTGTC TGACATCAAA TCTATTTCAG GTGGATAAGG GATCAACAGA AGTCTGAAGG 16076 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGGATAAGG GATCAACAGA AGTCTGAAGG 163 TGTTACTCCT GGTGAAGATG TCTACATTAT ACTTCGTCTA GATGGTCGTG TTCGACGATC 16016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTACTCCT GGTGAAGATG TCTACATTAT ACTTCGTCTA GATGGTCGTG TTCGACGATC 223 AGGAAAGGTC AGTACTTGTT GCTGCAATTC TCTTCTTTGG TCCATTAATC CTGACTCAGT 15956 ||||||| AGGAAAG... .......... .......... .......... .......... .......... 230 TATATACTTA TATGCATAGA TAATCAGCAC ATAAATTGAT CATGACATAA CATAGATGAC 15896 .......... .......... .......... .......... .......... .......... 230 TGAATCCATA AAAGTATAAT TTACTACTCA TACGGGTTAA TTCTTCGATT TTAATATCGA 15836 .......... .......... .......... .......... .......... .......... 230 CCAACTCTGC AGGGGATGCC TGACTGGGCT CAAATTTTAA AGGAACTGCC TCCAATGGAA 15776 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGGATGCC TGACTGGGCT CAAATTTTAA AGGAACTGCC TCCAATGGAA 278 GCAATATTAA GCAAGCTAGA AAGATAATAC AAGTTCCTCT TGCTGAGTGC TAAAATCTTT 15716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATATTAA GCAAGCTAGA AAGATAATAC AAGTTCCTCT TGCTGAGTGC TAAAATCTTT 338 TCACTACCTG GTGTATTTTC GGTCAGTCTC CTTACTTGAA ATATAAAAGG CACTAATTGA 15656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTACCTG GTGTATTTTC GGTCAGTCTC CTTACTTGAA ATATAAAAGG CACTAATTGA 398 TGCCTGTTGA GCTTGTCTGT TTTACGTTTC CATTTTTTCA CGAACATATA CTGTACTATA 15596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTGTTGA GCTTGTCTGT TTTACGTTTC CATTTTTTCA CGAACATATA CTGTACTATA 458 ATTCTA-TAA ATTGATATTG ATATTTGCCA GATGAATATC CAAAGGATAT GAAATCCCAT 15537 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTATTAA ATTGATATTG ATATTTGCCA GATGAATATC CAAAGGATAT GAAATCCCAT 518 AGGAAATAGA AA 15525 |||||| | || AGGAAAAAAT AA 530 hqPGS_C09HBa0099P03.1-2-_SGN-E288647+ (16615 16584,16372 16272,16105 16009,15823 15525) ******************************************************************************** EST sequence 88 +strand 446 n (File: SGN-E288832+) 1 GAAGACATAG GTTACAGTTT CCGTAGAGAC CTTAAGCTCA TCAGTGAGGT ACAAGCACCG 61 TTTAGGGGGG TCAGAAGATT CTTTTATGTG GCATTCATTG CTGCTGCTGG AATTTCTACA 121 TTTTTCACTA TACCCAGGTT AATCCGTGCA ATTCAAGGTG GAGATGGTGC TCCTGATTTA 181 GGGGCGACTG CAGGAAATGC TGCTATAAAT GTCGCTGGTA TTGCTGTTTT TGTGGCTTTG 241 TTGTTTTGGG ACAACAAAAA AGAGGAGGAA CAGCTTGCAC AAATATTGCG TGATGAAACA 301 CTATCAAGGC TGCCTTTGCG CCTTTCAACT GATAGGATTG TTGAACTCGT CCAGCTAAGA 361 GACACCGTGA GGCCTGTTAT TTTGGCTGGA AAAAAGGAGA CAGTCTCTCT GGCTATGAGA 421 AATGCTGAGA AATTCCGCAC TGAGCT Predicted gene structure (within gDNA segment 18301 to 16092): Exon 1 17701 17485 ( 217 n); cDNA 1 217 ( 217 n); score: 1.000 Intron 1 17484 17339 ( 146 n); Pd: 0.994 (s: 1.00), Pa: 0.175 (s: 1.00) Exon 2 17338 17181 ( 158 n); cDNA 218 375 ( 158 n); score: 1.000 Intron 2 17180 16773 ( 408 n); Pd: 0.890 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 16772 16702 ( 71 n); cDNA 376 446 ( 71 n); score: 1.000 MATCH C09HBa0099P03.1-2- SGN-E288832+ 1.000 446 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E288832+ (17701 17485,17338 17181,16772 16702) Alignment (genomic DNA sequence = upper lines): GAAGACATAG GTTACAGTTT CCGTAGAGAC CTTAAGCTCA TCAGTGAGGT ACAAGCACCG 17642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACATAG GTTACAGTTT CCGTAGAGAC CTTAAGCTCA TCAGTGAGGT ACAAGCACCG 60 TTTAGGGGGG TCAGAAGATT CTTTTATGTG GCATTCATTG CTGCTGCTGG AATTTCTACA 17582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAGGGGGG TCAGAAGATT CTTTTATGTG GCATTCATTG CTGCTGCTGG AATTTCTACA 120 TTTTTCACTA TACCCAGGTT AATCCGTGCA ATTCAAGGTG GAGATGGTGC TCCTGATTTA 17522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTCACTA TACCCAGGTT AATCCGTGCA ATTCAAGGTG GAGATGGTGC TCCTGATTTA 180 GGGGCGACTG CAGGAAATGC TGCTATAAAT GTCGCTGGTA AATAAGGACT ACCTTTGCTA 17462 |||||||||| |||||||||| |||||||||| ||||||| GGGGCGACTG CAGGAAATGC TGCTATAAAT GTCGCTG... .......... .......... 217 CGAATCATTT AGTTCACTTC TAAAGTTCTA GAAATTATTT TTGCTGGCTA TATTAACTTG 17402 .......... .......... .......... .......... .......... .......... 217 CGCTTTTAAA TGAAAAGAAC TGTTTCTCAA AAATGATTAA CCTCTTGAAC CAGCACTCTG 17342 .......... .......... .......... .......... .......... .......... 217 CAGGTATTGC TGTTTTTGTG GCTTTGTTGT TTTGGGACAA CAAAAAAGAG GAGGAACAGC 17282 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTATTGC TGTTTTTGTG GCTTTGTTGT TTTGGGACAA CAAAAAAGAG GAGGAACAGC 274 TTGCACAAAT ATTGCGTGAT GAAACACTAT CAAGGCTGCC TTTGCGCCTT TCAACTGATA 17222 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACAAAT ATTGCGTGAT GAAACACTAT CAAGGCTGCC TTTGCGCCTT TCAACTGATA 334 GGATTGTTGA ACTCGTCCAG CTAAGAGACA CCGTGAGGCC TGTTAGTGAG ACAATTTCCC 17162 |||||||||| |||||||||| |||||||||| |||||||||| | GGATTGTTGA ACTCGTCCAG CTAAGAGACA CCGTGAGGCC T......... .......... 375 CTTTACTCTT CCTGTCAATT TCTAGAAGTT GAGTGGAAAA CGTCCGGAGT CCTTCAATTT 17102 .......... .......... .......... .......... .......... .......... 375 TACCTTGAAG AATGAGATGT CCTGTATGAG ATGTCCTGTC ACTAGTCTAG TTCTCGTTGC 17042 .......... .......... .......... .......... .......... .......... 375 CATGTATCCT GCTTAACAGA TCAAAAGATA TTGTTTACCT CCTTCGTTTG AAGAATCCAT 16982 .......... .......... .......... .......... .......... .......... 375 TTCCATCACA TTTACATTGT CGGAGGATAA TTAAAGAGAA AAAGTCAGTA ACATATTTTG 16922 .......... .......... .......... .......... .......... .......... 375 CTAGGTTTGC AACAAATGTC TTTGTTTCAT GAGCAAAAAG CTATCCCATT ACGTATTTGT 16862 .......... .......... .......... .......... .......... .......... 375 TCTCTCTGTC TCTCTTTTTC CTTATTAAAA ATTCCGGACT TGAACATATT CTCTCCTTGT 16802 .......... .......... .......... .......... .......... .......... 375 ATTTGAAGTT TGACCAATTT GCTTGTTAGG TTATTTTGGC TGGAAAAAAG GAGACAGTCT 16742 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTATTTTGGC TGGAAAAAAG GAGACAGTCT 406 CTCTGGCTAT GAGAAATGCT GAGAAATTCC GCACTGAGCT 16702 |||||||||| |||||||||| |||||||||| |||||||||| CTCTGGCTAT GAGAAATGCT GAGAAATTCC GCACTGAGCT 446 hqPGS_C09HBa0099P03.1-2-_SGN-E288832+ (17701 17485,17338 17181,16772 16702) ******************************************************************************** EST sequence 79 +strand 686 n (File: SGN-E318163+) 1 TTGACATGGC CATTACAACT CTTCCCTCCT CTCATCACCT CCATTTCTGC TTCTTCTCTT 61 CATCATCTTC CAAATTCTCA ATCACTACAC AATTATGCCT AAATTTTCCC CCGAAGAATC 121 GTATTTCACT CGTCATTTGT TCTTCTTCTA CTTCGCCCCC TCCGCCATCA TCGTCGTCGC 181 CCCAAGTCAG TGAACCCACT CCCACTGCTG AGTCCTGTGT CAATGCCGGC CTCGACCTCT 241 TCTCTAAAGG ACGGGTGAAA GATGCTCTTG TGCTATTCGA CACAGCACTT ACTTTAAATC 301 CCAACCCTGA GGAGGCTCAA GCTGCATTTT ATAACAAAGC ATGTTGCCAT GCCTACAGGG 361 GGGAAGGAAA GAAAGCTGCT GAGTGTTTAC GCACTGCTTT GAAAGAGTAT AACCTTAAGT 421 TTGGCACAAT CTTAAATGAT CCAGATTTGG CTTCCTTCAG AGCATTGCCT GAATTTAAGG 481 AACTACAGGA AGAGGCTAGG TTAGGAGGGG AAGACATAGG TTACAGTTTC CGTAGAGACC 541 TTAAGCTCAT CAGTGAGTAC AAGCACCGTT TAGGGGGGTC AGAAGATTCT TTTATGTGGC 601 ATTCATTGCT GCTGCTGGAA TTTCTACATT TTTCACTATA CCCAGGTTAA TCCGTGCAAT 661 TCAAGGGTGG AGATGGTGCT CCTGAT Predicted gene structure (within gDNA segment 20903 to 16915): Exon 1 20303 20050 ( 254 n); cDNA 1 254 ( 254 n); score: 1.000 Intron 1 20049 18483 (1567 n); Pd: 0.998 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 2 18482 18379 ( 104 n); cDNA 255 358 ( 104 n); score: 1.000 Intron 2 18378 18022 ( 357 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 18021 17886 ( 136 n); cDNA 359 494 ( 136 n); score: 1.000 Intron 3 17885 17717 ( 169 n); Pd: 0.996 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 4 17716 17525 ( 192 n); cDNA 495 686 ( 192 n); score: 0.982 MATCH C09HBa0099P03.1-2- SGN-E318163+ 0.995 686 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E318163+ (20303 20050,18482 18379,18021 17886,17716 17525) Alignment (genomic DNA sequence = upper lines): TTGACATGGC CATTACAACT CTTCCCTCCT CTCATCACCT CCATTTCTGC TTCTTCTCTT 20244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACATGGC CATTACAACT CTTCCCTCCT CTCATCACCT CCATTTCTGC TTCTTCTCTT 60 CATCATCTTC CAAATTCTCA ATCACTACAC AATTATGCCT AAATTTTCCC CCGAAGAATC 20184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCATCTTC CAAATTCTCA ATCACTACAC AATTATGCCT AAATTTTCCC CCGAAGAATC 120 GTATTTCACT CGTCATTTGT TCTTCTTCTA CTTCGCCCCC TCCGCCATCA TCGTCGTCGC 20124 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTTCACT CGTCATTTGT TCTTCTTCTA CTTCGCCCCC TCCGCCATCA TCGTCGTCGC 180 CCCAAGTCAG TGAACCCACT CCCACTGCTG AGTCCTGTGT CAATGCCGGC CTCGACCTCT 20064 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAGTCAG TGAACCCACT CCCACTGCTG AGTCCTGTGT CAATGCCGGC CTCGACCTCT 240 TCTCTAAAGG ACGGGTATTA TCTTAATTCT GTTTCAATTT CATGGCAGAA GAAATTCCTT 20004 |||||||||| |||| TCTCTAAAGG ACGG...... .......... .......... .......... .......... 254 AATTATTATG TGATTGCATT GTTTTTCAGG TCTATTATAA ACAATGATAA GGTCTGCATA 19944 .......... .......... .......... .......... .......... .......... 254 TACATTATGC TTTATGAAAC TCCTCAGTAT TGTTGTTGTA TTGTTATTTT TGTTGATTTA 19884 .......... .......... .......... .......... .......... .......... 254 GACAGAGAGT GTGTCGATTG AGGTTCGTGA CCATAAAATT TTTGTTTATT TATATATATT 19824 .......... .......... .......... .......... .......... .......... 254 TATTTTTTTA ACAAAGATAT ACTTCAATTG TAGCTACGCC ACTAGTTGTA GATATCAAAT 19764 .......... .......... .......... .......... .......... .......... 254 AAGTTAAGTA AGTAAATAAA AGGGATTCGT TTTAATTTAT GCAATTTAAT TTGATAAATG 19704 .......... .......... .......... .......... .......... .......... 254 ACAATAGAGG TTTTGATTTC GAGTTTTAAT ATCCCCATCA TTTGATCATT TGCAGTCATA 19644 .......... .......... .......... .......... .......... .......... 254 TTATTCCCTT CTATTTGTTA CCTAATTTTC CTCAAGTGTT CTCCAAGAGT TTGTTGTTGG 19584 .......... .......... .......... .......... .......... .......... 254 GTATTTGACC TGAGTTTCTT AGCATAAATA GGTTATAAAG TTTCCGTTTT TGAGTAGTCA 19524 .......... .......... .......... .......... .......... .......... 254 TTTTCTTGTA GAAAAAAGTT TAGTACTCTA TAAATTGAGG CTCGTTCCTT CTAACTTAAT 19464 .......... .......... .......... .......... .......... .......... 254 CAACATTCAC AATGTAGTCA TAGGGGGCTT TGAGAGTTTG GTTAGGGCAA GTGTTCTCCA 19404 .......... .......... .......... .......... .......... .......... 254 AGAATCTGCA ACTTGAGCAA GTTTACTAGT TTGACATGTC TATTCAAAAT TTTCCTGTTT 19344 .......... .......... .......... .......... .......... .......... 254 TGAGTAAATC TTATGGTAAC AGTTGTACTC AGAGGTGTAT CTAGGATTTT TAGTTTATGA 19284 .......... .......... .......... .......... .......... .......... 254 GTTTTGAATA TATCATTTTA CACATAGCAA ATGAACTTTT TGAAACATAA CTACGAGGTT 19224 .......... .......... .......... .......... .......... .......... 254 TGAGCCAAAG CTACAGGGTT TTGTTGAACC AAATGGCTGA AGGGGTGGCT CTGCTCCTAC 19164 .......... .......... .......... .......... .......... .......... 254 ACTTAACACC CACCCTAATC ATGCTTTATT GAAAATTGGT CGTGAGTGGA CTTTTGACAG 19104 .......... .......... .......... .......... .......... .......... 254 TGACTTGAAA AATAGGAAGG TACTTTCAGA TTTTATCTGT AACAACAACT AGATTTCAAA 19044 .......... .......... .......... .......... .......... .......... 254 ATGCGTATGA CTGGAACTTT ATAATAATGC TAAGATTGTA AATTTGACAT CAAACAAGAA 18984 .......... .......... .......... .......... .......... .......... 254 CATGTGTCAC ATGAATTGAG ATAGATGGAC TAGGAAGGAG TATAATTGGA AAGTAAATTT 18924 .......... .......... .......... .......... .......... .......... 254 CTGTCTAAAA CTGAAAGTGT ACCAAAAGAT TGATGATTCA AAGATTTTCC TACTCAACAA 18864 .......... .......... .......... .......... .......... .......... 254 GTTTTTCTGT TAAATCTTGT GCACATCAGA AGCTTGAATG TCTGAGTTAT AGTTTCTTGT 18804 .......... .......... .......... .......... .......... .......... 254 GTATCTCTAT TTGATCCTGC ATAGCAAGCT TAAGGATAGT ATCTAGTAGG TTGAATCACA 18744 .......... .......... .......... .......... .......... .......... 254 ATTATTACTG GAAAAGCTAT CAATTTGTTA ATGTCATTGA TCAAATCTTC TTTTTGCTTT 18684 .......... .......... .......... .......... .......... .......... 254 TAATCAACAA TTTGTCTTTT GTGAAATTAC CTATTTAAAA TCTATTCAGT TGGCTTTTTT 18624 .......... .......... .......... .......... .......... .......... 254 TTTTTTGGTT ATTTCTCACT TAATTATGTT TCCAATAATC TGCATTTTGG TTTGTGTACA 18564 .......... .......... .......... .......... .......... .......... 254 AACCTCTTGC AGTTGGTTAC AATTTCAATC TGCAATATGG GCGACATGCA CCTTATTGTT 18504 .......... .......... .......... .......... .......... .......... 254 CACTAAATTT GATCTTTCCA GGTGAAAGAT GCTCTTGTGC TATTCGACAC AGCACTTACT 18444 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTGAAAGAT GCTCTTGTGC TATTCGACAC AGCACTTACT 293 TTAAATCCCA ACCCTGAGGA GGCTCAAGCT GCATTTTATA ACAAAGCATG TTGCCATGCC 18384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAATCCCA ACCCTGAGGA GGCTCAAGCT GCATTTTATA ACAAAGCATG TTGCCATGCC 353 TACAGGTATA TCTCTCCTTT GCCTCTTTCA TGGTTGAATT GATTAAGCTG GATCTTATAA 18324 ||||| TACAG..... .......... .......... .......... .......... .......... 358 ACGGTTATTT GTTTGAAATC ATGTGAGACA TTGAGAAAAA AAACATATTT TCGACTTTCT 18264 .......... .......... .......... .......... .......... .......... 358 TCTCGTGTAA AATGCAAGTA AAGGAATTTA AAATTTCTTA ATCACAGTTT TAGCTTTGTG 18204 .......... .......... .......... .......... .......... .......... 358 AACTGTAAGT TGAGGCACCT GTAGTTTCTT AATCACAGTT CTTAGCTTAA TTGTTTCATT 18144 .......... .......... .......... .......... .......... .......... 358 GGAAGGATCA CTAAAACCAA TGTTGAATCT TCAATGAGCG TCTACTATAC TTATTTATTC 18084 .......... .......... .......... .......... .......... .......... 358 TTCTTCACTC TTTTATTATT TCTCTATTTG TTTAATAATT TATTTTTCTT TATTAACTCA 18024 .......... .......... .......... .......... .......... .......... 358 AGGGGGGAAG GAAAGAAAGC TGCTGAGTGT TTACGCACTG CTTTGAAAGA GTATAACCTT 17964 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GGGGGAAG GAAAGAAAGC TGCTGAGTGT TTACGCACTG CTTTGAAAGA GTATAACCTT 416 AAGTTTGGCA CAATCTTAAA TGATCCAGAT TTGGCTTCCT TCAGAGCATT GCCTGAATTT 17904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTTGGCA CAATCTTAAA TGATCCAGAT TTGGCTTCCT TCAGAGCATT GCCTGAATTT 476 AAGGAACTAC AGGAAGAGGT TTGTTTCCAG CTGTTGATAT AGTTCTTTAG TTTTCGTCAT 17844 |||||||||| |||||||| AAGGAACTAC AGGAAGAG.. .......... .......... .......... .......... 494 GCTTGGATGT CTGAATTTAA TTCAGCTCCT TACCACATTG ACTATGTTAC AGTATCTCCA 17784 .......... .......... .......... .......... .......... .......... 494 GAACTTCGTA ATGCTCTAGC TTTGCTTCAT TGTTTCTGAA TCTCATAGTC TTCTATTTAC 17724 .......... .......... .......... .......... .......... .......... 494 CTCACAGGCT AGGTTAGGAG GGGAAGACAT AGGTTACAGT TTCCGTAGAG ACCTTAAGCT 17664 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCT AGGTTAGGAG GGGAAGACAT AGGTTACAGT TTCCGTAGAG ACCTTAAGCT 547 CATCAGTGAG GTACAAGCAC CGTTTAGGGG GGTCAGAAGA TTCTTTTATG TGGCATTCAT 17604 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAGTGA- GTACAAGCAC CGTTTAGGGG GGTCAGAAGA TTCTTTTATG TGGCATTCAT 606 TGCTGCTGCT GGAATTTCTA CATTTTTCAC TATACCCAGG TTAATCCGTG CAATTCAA-G 17545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGCTGCTGCT GGAATTTCTA CATTTTTCAC TATACCCAGG TTAATCCGTG CAATTCAAGG 666 GTGGAGATGG TGCTCCTGAT 17525 |||||||||| |||||||||| GTGGAGATGG TGCTCCTGAT 686 hqPGS_C09HBa0099P03.1-2-_SGN-E318163+ (20303 20050,18482 18379,18021 17886,17716 17525) ******************************************************************************** EST sequence 31 +strand 497 n (File: SGN-E298958+) 1 CGCAGCTCAT TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT 61 CTCTTTGCCA TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC 121 AAGCCTAAGT GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT 181 GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC 241 AAATGTGTTG CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC 301 CCTTGCAATT TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG 361 TGCTGAAGAC TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT 421 GCACATCTTA AAAAGTGATT AATAAATCAT ACGTCGTGGG TTGAAATTGG ACCCTTTTAT 481 TCGCTCGAAA AAAAAAA Predicted gene structure (within gDNA segment 23777 to 31725): Exon 1 24389 24412 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 25 71 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 72 156 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 157 246 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30981 ( 241 n); cDNA 247 489 ( 243 n); score: 0.975 MATCH C09HBa0099P03.1-2+ SGN-E298958+ 0.986 487 0.980 C PGS_C09HBa0099P03.1-2+_SGN-E298958+ (24389 24412,24590 24636,27191 27275,30524 30613,30741 30981) Alignment (genomic DNA sequence = upper lines): CGCAGCTCAT TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT 24448 |||||||||| |||||||||| |||| CGCAGCTCAT TCTAGAACAG TCAG...... .......... .......... .......... 24 GTTTACTCTT TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT 24508 .......... .......... .......... .......... .......... .......... 24 GTTTATTTTG TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA 24568 .......... .......... .......... .......... .......... .......... 24 GTATAAAAGT TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC 24628 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC 63 TTTGCCATGT GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA 24688 |||||||| TTTGCCAT.. .......... .......... .......... .......... .......... 71 TTTGATTTTA GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT 24748 .......... .......... .......... .......... .......... .......... 71 TCACTCTACT AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA 24808 .......... .......... .......... .......... .......... .......... 71 AATAGTTTTT TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT 24868 .......... .......... .......... .......... .......... .......... 71 TGCAATAAAA ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT 24928 .......... .......... .......... .......... .......... .......... 71 CATCATTAGT TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG 24988 .......... .......... .......... .......... .......... .......... 71 TTTGTTCTTG ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA 25048 .......... .......... .......... .......... .......... .......... 71 TTATAAAATT TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA 25108 .......... .......... .......... .......... .......... .......... 71 TTGTACTGAT TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT 25168 .......... .......... .......... .......... .......... .......... 71 TTAAGGCTTT ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT 25228 .......... .......... .......... .......... .......... .......... 71 CCCCTAAGTA GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT 25288 .......... .......... .......... .......... .......... .......... 71 CAAAGCAAGT ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG 25348 .......... .......... .......... .......... .......... .......... 71 AAGAGAAAAA GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT 25408 .......... .......... .......... .......... .......... .......... 71 ACCACAATTG AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA 25468 .......... .......... .......... .......... .......... .......... 71 GACAACGTTA GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA 25528 .......... .......... .......... .......... .......... .......... 71 CATGTCATGT TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT 25588 .......... .......... .......... .......... .......... .......... 71 TCTCTGTCAT GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC 25648 .......... .......... .......... .......... .......... .......... 71 CTATCCTGTT ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT 25708 .......... .......... .......... .......... .......... .......... 71 AGAAGCTTAA CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC 25768 .......... .......... .......... .......... .......... .......... 71 GTGCGTCAGA GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT 25828 .......... .......... .......... .......... .......... .......... 71 AGTATAACTA TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT 25888 .......... .......... .......... .......... .......... .......... 71 GTTAGAAGTC AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT 25948 .......... .......... .......... .......... .......... .......... 71 CTCTCAACCA TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT 26008 .......... .......... .......... .......... .......... .......... 71 TGTTCTAAAC GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC 26068 .......... .......... .......... .......... .......... .......... 71 AATATGCACA GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT 26128 .......... .......... .......... .......... .......... .......... 71 ATACATATAT CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT 26188 .......... .......... .......... .......... .......... .......... 71 AATTTCATTT ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT 26248 .......... .......... .......... .......... .......... .......... 71 GCTTATTTTT AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT 26308 .......... .......... .......... .......... .......... .......... 71 GTCTCAATTT TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA 26368 .......... .......... .......... .......... .......... .......... 71 TTGGTTTTTA GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA 26428 .......... .......... .......... .......... .......... .......... 71 TCTATTCTGT CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT 26488 .......... .......... .......... .......... .......... .......... 71 CTTATATTAT TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG 26548 .......... .......... .......... .......... .......... .......... 71 TTGTGTTTCA GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA 26608 .......... .......... .......... .......... .......... .......... 71 AGACTAAGCC CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA 26668 .......... .......... .......... .......... .......... .......... 71 GCCGTTGTTA AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG 26728 .......... .......... .......... .......... .......... .......... 71 TCACTACTGA ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT 26788 .......... .......... .......... .......... .......... .......... 71 CTACAATCCC CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT 26848 .......... .......... .......... .......... .......... .......... 71 TTTGAAGTAT GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT 26908 .......... .......... .......... .......... .......... .......... 71 TTAATTTACA CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT 26968 .......... .......... .......... .......... .......... .......... 71 CTGTAATTTT ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT 27028 .......... .......... .......... .......... .......... .......... 71 ATATTGTGAT TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA 27088 .......... .......... .......... .......... .......... .......... 71 AAGAAAAAAA ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA 27148 .......... .......... .......... .......... .......... .......... 71 TCTCTTAGAA GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT 27208 |||||||| |||||||||| .......... .......... .......... .......... ..GTCGGACG AGGAAGTTGT 89 TGACCCAAAG GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA 27268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCCAAAG GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA 149 GTATCAGGTG ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT 27328 ||||||| GTATCAG... .......... .......... .......... .......... .......... 156 CTTATTTTAA TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA 27388 .......... .......... .......... .......... .......... .......... 156 CTAAAGGGGT ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC 27448 .......... .......... .......... .......... .......... .......... 156 TTTTGGTTCT AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT 27508 .......... .......... .......... .......... .......... .......... 156 CCACTGATTA AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT 27568 .......... .......... .......... .......... .......... .......... 156 TTCTTTTTTT GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG 27628 .......... .......... .......... .......... .......... .......... 156 AATCTTCCTT TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA 27688 .......... .......... .......... .......... .......... .......... 156 CAATGGTATG TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA 27748 .......... .......... .......... .......... .......... .......... 156 AAAATTTGAA AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC 27808 .......... .......... .......... .......... .......... .......... 156 TATATTGACA AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT 27868 .......... .......... .......... .......... .......... .......... 156 CAAAGATCAT CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT 27928 .......... .......... .......... .......... .......... .......... 156 TTCAATCAAG ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG 27988 .......... .......... .......... .......... .......... .......... 156 TGGGAATTTA TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA 28048 .......... .......... .......... .......... .......... .......... 156 TAAGTTGTAT TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT 28108 .......... .......... .......... .......... .......... .......... 156 TAAACCATCG TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT 28168 .......... .......... .......... .......... .......... .......... 156 TTTTCCTCAG GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA 28228 .......... .......... .......... .......... .......... .......... 156 ATACCCCTCT TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA 28288 .......... .......... .......... .......... .......... .......... 156 AAGCTCGAAT GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC 28348 .......... .......... .......... .......... .......... .......... 156 CATGCAAAAG GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT 28408 .......... .......... .......... .......... .......... .......... 156 AGTGCATTGT ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT 28468 .......... .......... .......... .......... .......... .......... 156 GATTATTCAT ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC 28528 .......... .......... .......... .......... .......... .......... 156 ATTCCAACCT TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG 28588 .......... .......... .......... .......... .......... .......... 156 CCCCAGATGG TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG 28648 .......... .......... .......... .......... .......... .......... 156 AACAGGGAGA AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT 28708 .......... .......... .......... .......... .......... .......... 156 GTTTATGTCA ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT 28768 .......... .......... .......... .......... .......... .......... 156 TTTTCTGCCT CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC 28828 .......... .......... .......... .......... .......... .......... 156 CATTTCTTCT GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA 28888 .......... .......... .......... .......... .......... .......... 156 TTATTTTCCA TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT 28948 .......... .......... .......... .......... .......... .......... 156 TCTTACAAAA ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT 29008 .......... .......... .......... .......... .......... .......... 156 CTAGTGTAGT TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA 29068 .......... .......... .......... .......... .......... .......... 156 GAGTGGCACA AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT 29128 .......... .......... .......... .......... .......... .......... 156 TGGAAAATAT CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG 29188 .......... .......... .......... .......... .......... .......... 156 TATGTACTGA TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC 29248 .......... .......... .......... .......... .......... .......... 156 TTTGCATGTT ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC 29308 .......... .......... .......... .......... .......... .......... 156 TCTCTAAGAA GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG 29368 .......... .......... .......... .......... .......... .......... 156 ATTAGGCACT CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT 29428 .......... .......... .......... .......... .......... .......... 156 CTTTGTTTTG TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT 29488 .......... .......... .......... .......... .......... .......... 156 TTTCTCTTCA ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT 29548 .......... .......... .......... .......... .......... .......... 156 TTGTATCGCC AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT 29608 .......... .......... .......... .......... .......... .......... 156 TTCTTTCTCC AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT 29668 .......... .......... .......... .......... .......... .......... 156 TATTTTTTAT TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA 29728 .......... .......... .......... .......... .......... .......... 156 CTTAATTATT TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA 29788 .......... .......... .......... .......... .......... .......... 156 AGGATTTTGG TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG 29848 .......... .......... .......... .......... .......... .......... 156 AACAATGATG TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT 29908 .......... .......... .......... .......... .......... .......... 156 ATTTGATCTT CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT 29968 .......... .......... .......... .......... .......... .......... 156 GTGGAAGTAT TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA 30028 .......... .......... .......... .......... .......... .......... 156 TATATTACTT TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG 30088 .......... .......... .......... .......... .......... .......... 156 GGACTTCATT TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA 30148 .......... .......... .......... .......... .......... .......... 156 TCTTGAAAAA CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC 30208 .......... .......... .......... .......... .......... .......... 156 CACTGCTCTA TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT 30268 .......... .......... .......... .......... .......... .......... 156 GGCAAATGTC ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT 30328 .......... .......... .......... .......... .......... .......... 156 TGCAGTCCCA AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT 30388 .......... .......... .......... .......... .......... .......... 156 ATCCCCCTTC TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT 30448 .......... .......... .......... .......... .......... .......... 156 GAAGAAGGCC AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA 30508 .......... .......... .......... .......... .......... .......... 156 TTCTGCATCC TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT 30568 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT 201 TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC 30628 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... 246 CGGTTGTTTG GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT 30688 .......... .......... .......... .......... .......... .......... 246 CCGTTGTTGT CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC 30748 |||||||| .......... .......... .......... .......... .......... ..GTTGCTGC 254 GAAGTTGTTT GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC 30808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTTGTTT GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC 314 TTCTTTTTGG TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT 30868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTTGG TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT 374 AACCCTTTCA ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA 30928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTTTCA ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA 434 GTGATTAATA AATCATAC-T CGTGGGTTG- AATTGGACCC TTTTATTCGT TCGAA 30981 |||||||||| |||||||| | ||||||||| |||||||||| ||||||||| ||||| GTGATTAATA AATCATACGT CGTGGGTTGA AATTGGACCC TTTTATTCGC TCGAA 489 hqPGS_C09HBa0099P03.1-2+_SGN-E298958+ (24389 24412,24590 24636,27191 27275,30524 30613,30741 30981) ******************************************************************************** EST sequence 9 +strand 475 n (File: SGN-E304713+) 1 CGCAGCTCAT TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT 61 CTCTTTGCCA TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC 121 AAGCCTAAGT GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT 181 GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC 241 AAATGTGTTG CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC 301 CCTTGCAATT TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG 361 TGCTGAAGAC TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT 421 GCACATCTTA AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTA Predicted gene structure (within gDNA segment 23777 to 31588): Exon 1 24389 24412 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 25 71 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 72 156 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 157 246 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30968 ( 228 n); cDNA 247 474 ( 228 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E304713+ 1.000 474 0.998 C PGS_C09HBa0099P03.1-2+_SGN-E304713+ (24389 24412,24590 24636,27191 27275,30524 30613,30741 30968) Alignment (genomic DNA sequence = upper lines): CGCAGCTCAT TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT 24448 |||||||||| |||||||||| |||| CGCAGCTCAT TCTAGAACAG TCAG...... .......... .......... .......... 24 GTTTACTCTT TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT 24508 .......... .......... .......... .......... .......... .......... 24 GTTTATTTTG TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA 24568 .......... .......... .......... .......... .......... .......... 24 GTATAAAAGT TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC 24628 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC 63 TTTGCCATGT GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA 24688 |||||||| TTTGCCAT.. .......... .......... .......... .......... .......... 71 TTTGATTTTA GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT 24748 .......... .......... .......... .......... .......... .......... 71 TCACTCTACT AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA 24808 .......... .......... .......... .......... .......... .......... 71 AATAGTTTTT TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT 24868 .......... .......... .......... .......... .......... .......... 71 TGCAATAAAA ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT 24928 .......... .......... .......... .......... .......... .......... 71 CATCATTAGT TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG 24988 .......... .......... .......... .......... .......... .......... 71 TTTGTTCTTG ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA 25048 .......... .......... .......... .......... .......... .......... 71 TTATAAAATT TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA 25108 .......... .......... .......... .......... .......... .......... 71 TTGTACTGAT TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT 25168 .......... .......... .......... .......... .......... .......... 71 TTAAGGCTTT ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT 25228 .......... .......... .......... .......... .......... .......... 71 CCCCTAAGTA GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT 25288 .......... .......... .......... .......... .......... .......... 71 CAAAGCAAGT ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG 25348 .......... .......... .......... .......... .......... .......... 71 AAGAGAAAAA GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT 25408 .......... .......... .......... .......... .......... .......... 71 ACCACAATTG AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA 25468 .......... .......... .......... .......... .......... .......... 71 GACAACGTTA GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA 25528 .......... .......... .......... .......... .......... .......... 71 CATGTCATGT TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT 25588 .......... .......... .......... .......... .......... .......... 71 TCTCTGTCAT GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC 25648 .......... .......... .......... .......... .......... .......... 71 CTATCCTGTT ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT 25708 .......... .......... .......... .......... .......... .......... 71 AGAAGCTTAA CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC 25768 .......... .......... .......... .......... .......... .......... 71 GTGCGTCAGA GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT 25828 .......... .......... .......... .......... .......... .......... 71 AGTATAACTA TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT 25888 .......... .......... .......... .......... .......... .......... 71 GTTAGAAGTC AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT 25948 .......... .......... .......... .......... .......... .......... 71 CTCTCAACCA TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT 26008 .......... .......... .......... .......... .......... .......... 71 TGTTCTAAAC GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC 26068 .......... .......... .......... .......... .......... .......... 71 AATATGCACA GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT 26128 .......... .......... .......... .......... .......... .......... 71 ATACATATAT CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT 26188 .......... .......... .......... .......... .......... .......... 71 AATTTCATTT ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT 26248 .......... .......... .......... .......... .......... .......... 71 GCTTATTTTT AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT 26308 .......... .......... .......... .......... .......... .......... 71 GTCTCAATTT TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA 26368 .......... .......... .......... .......... .......... .......... 71 TTGGTTTTTA GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA 26428 .......... .......... .......... .......... .......... .......... 71 TCTATTCTGT CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT 26488 .......... .......... .......... .......... .......... .......... 71 CTTATATTAT TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG 26548 .......... .......... .......... .......... .......... .......... 71 TTGTGTTTCA GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA 26608 .......... .......... .......... .......... .......... .......... 71 AGACTAAGCC CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA 26668 .......... .......... .......... .......... .......... .......... 71 GCCGTTGTTA AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG 26728 .......... .......... .......... .......... .......... .......... 71 TCACTACTGA ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT 26788 .......... .......... .......... .......... .......... .......... 71 CTACAATCCC CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT 26848 .......... .......... .......... .......... .......... .......... 71 TTTGAAGTAT GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT 26908 .......... .......... .......... .......... .......... .......... 71 TTAATTTACA CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT 26968 .......... .......... .......... .......... .......... .......... 71 CTGTAATTTT ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT 27028 .......... .......... .......... .......... .......... .......... 71 ATATTGTGAT TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA 27088 .......... .......... .......... .......... .......... .......... 71 AAGAAAAAAA ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA 27148 .......... .......... .......... .......... .......... .......... 71 TCTCTTAGAA GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT 27208 |||||||| |||||||||| .......... .......... .......... .......... ..GTCGGACG AGGAAGTTGT 89 TGACCCAAAG GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA 27268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCCAAAG GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA 149 GTATCAGGTG ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT 27328 ||||||| GTATCAG... .......... .......... .......... .......... .......... 156 CTTATTTTAA TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA 27388 .......... .......... .......... .......... .......... .......... 156 CTAAAGGGGT ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC 27448 .......... .......... .......... .......... .......... .......... 156 TTTTGGTTCT AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT 27508 .......... .......... .......... .......... .......... .......... 156 CCACTGATTA AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT 27568 .......... .......... .......... .......... .......... .......... 156 TTCTTTTTTT GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG 27628 .......... .......... .......... .......... .......... .......... 156 AATCTTCCTT TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA 27688 .......... .......... .......... .......... .......... .......... 156 CAATGGTATG TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA 27748 .......... .......... .......... .......... .......... .......... 156 AAAATTTGAA AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC 27808 .......... .......... .......... .......... .......... .......... 156 TATATTGACA AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT 27868 .......... .......... .......... .......... .......... .......... 156 CAAAGATCAT CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT 27928 .......... .......... .......... .......... .......... .......... 156 TTCAATCAAG ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG 27988 .......... .......... .......... .......... .......... .......... 156 TGGGAATTTA TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA 28048 .......... .......... .......... .......... .......... .......... 156 TAAGTTGTAT TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT 28108 .......... .......... .......... .......... .......... .......... 156 TAAACCATCG TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT 28168 .......... .......... .......... .......... .......... .......... 156 TTTTCCTCAG GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA 28228 .......... .......... .......... .......... .......... .......... 156 ATACCCCTCT TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA 28288 .......... .......... .......... .......... .......... .......... 156 AAGCTCGAAT GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC 28348 .......... .......... .......... .......... .......... .......... 156 CATGCAAAAG GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT 28408 .......... .......... .......... .......... .......... .......... 156 AGTGCATTGT ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT 28468 .......... .......... .......... .......... .......... .......... 156 GATTATTCAT ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC 28528 .......... .......... .......... .......... .......... .......... 156 ATTCCAACCT TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG 28588 .......... .......... .......... .......... .......... .......... 156 CCCCAGATGG TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG 28648 .......... .......... .......... .......... .......... .......... 156 AACAGGGAGA AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT 28708 .......... .......... .......... .......... .......... .......... 156 GTTTATGTCA ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT 28768 .......... .......... .......... .......... .......... .......... 156 TTTTCTGCCT CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC 28828 .......... .......... .......... .......... .......... .......... 156 CATTTCTTCT GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA 28888 .......... .......... .......... .......... .......... .......... 156 TTATTTTCCA TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT 28948 .......... .......... .......... .......... .......... .......... 156 TCTTACAAAA ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT 29008 .......... .......... .......... .......... .......... .......... 156 CTAGTGTAGT TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA 29068 .......... .......... .......... .......... .......... .......... 156 GAGTGGCACA AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT 29128 .......... .......... .......... .......... .......... .......... 156 TGGAAAATAT CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG 29188 .......... .......... .......... .......... .......... .......... 156 TATGTACTGA TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC 29248 .......... .......... .......... .......... .......... .......... 156 TTTGCATGTT ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC 29308 .......... .......... .......... .......... .......... .......... 156 TCTCTAAGAA GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG 29368 .......... .......... .......... .......... .......... .......... 156 ATTAGGCACT CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT 29428 .......... .......... .......... .......... .......... .......... 156 CTTTGTTTTG TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT 29488 .......... .......... .......... .......... .......... .......... 156 TTTCTCTTCA ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT 29548 .......... .......... .......... .......... .......... .......... 156 TTGTATCGCC AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT 29608 .......... .......... .......... .......... .......... .......... 156 TTCTTTCTCC AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT 29668 .......... .......... .......... .......... .......... .......... 156 TATTTTTTAT TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA 29728 .......... .......... .......... .......... .......... .......... 156 CTTAATTATT TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA 29788 .......... .......... .......... .......... .......... .......... 156 AGGATTTTGG TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG 29848 .......... .......... .......... .......... .......... .......... 156 AACAATGATG TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT 29908 .......... .......... .......... .......... .......... .......... 156 ATTTGATCTT CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT 29968 .......... .......... .......... .......... .......... .......... 156 GTGGAAGTAT TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA 30028 .......... .......... .......... .......... .......... .......... 156 TATATTACTT TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG 30088 .......... .......... .......... .......... .......... .......... 156 GGACTTCATT TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA 30148 .......... .......... .......... .......... .......... .......... 156 TCTTGAAAAA CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC 30208 .......... .......... .......... .......... .......... .......... 156 CACTGCTCTA TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT 30268 .......... .......... .......... .......... .......... .......... 156 GGCAAATGTC ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT 30328 .......... .......... .......... .......... .......... .......... 156 TGCAGTCCCA AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT 30388 .......... .......... .......... .......... .......... .......... 156 ATCCCCCTTC TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT 30448 .......... .......... .......... .......... .......... .......... 156 GAAGAAGGCC AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA 30508 .......... .......... .......... .......... .......... .......... 156 TTCTGCATCC TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT 30568 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT 201 TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC 30628 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... 246 CGGTTGTTTG GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT 30688 .......... .......... .......... .......... .......... .......... 246 CCGTTGTTGT CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC 30748 |||||||| .......... .......... .......... .......... .......... ..GTTGCTGC 254 GAAGTTGTTT GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC 30808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTTGTTT GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC 314 TTCTTTTTGG TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT 30868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTTGG TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT 374 AACCCTTTCA ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA 30928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTTTCA ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA 434 GTGATTAATA AATCATACTC GTGGGTTGAA TTGGACCCTT 30968 |||||||||| |||||||||| |||||||||| |||||||||| GTGATTAATA AATCATACTC GTGGGTTGAA TTGGACCCTT 474 hqPGS_C09HBa0099P03.1-2+_SGN-E304713+ (24389 24412,24590 24636,27191 27275,30524 30613,30741 30968) ******************************************************************************** EST sequence 5 +strand 504 n (File: SGN-E242585+) 1 TCATTCTAGA ACAGTCAGGT GATTTTGCAG AATCGAAGTC TTCGTCTCGA ATATCTCTTT 61 GCCATGTCGG ACGAGGAAGT TGTTGACCCA AAGGCGACAT TAGAAGTAAG TTGCAAGCCT 121 AAGTGTGTAA GGCAACTAAA GGAGTATCAG GCATGTACTA AAAGGATAGA AGGTGATGAA 181 TCAGGGCACA AACATTGCAC TGGACAGTAT TTTGATTATT GGCACTGCAT CGACAAATGT 241 GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC 301 AATTTATCTT CTTTTTGGTT GTTGAACAAG TCATTACCAT ATTATTCCTC ACTGTGCTGA 361 AGACTTGTAA CCCTTTCAAT CAACTTGGTT GCTGCATGGA AAATTTTGAA CTATGCACAT 421 CTTAAAAAGT GATTAATAAA TCATACTCGT GGGTTGAATT GGACCCTTTT ATTCGTTCGA 481 ATTNNNNNAA ANAAAANAAA AAAA Predicted gene structure (within gDNA segment 23837 to 31803): Exon 1 24395 24412 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 19 65 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 66 150 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 151 240 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30983 ( 243 n); cDNA 241 483 ( 243 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E242585+ 1.000 483 0.958 C PGS_C09HBa0099P03.1-2+_SGN-E242585+ (24395 24412,24590 24636,27191 27275,30524 30613,30741 30983) Alignment (genomic DNA sequence = upper lines): TCATTCTAGA ACAGTCAGGT TTACCCGTTG CTCCTCTTCT CTGCATTTTG ATCTGTTTAC 24454 |||||||||| |||||||| TCATTCTAGA ACAGTCAG.. .......... .......... .......... .......... 18 TCTTTACTTT TTTCTTCCGA TCTGCATATT TAGGTTTTGT TATTCAATAT TTTTGTTTAT 24514 .......... .......... .......... .......... .......... .......... 18 TTTGTACATA TGGAGGATTT TTGGTGTTTC AGCTGGTTAA TTTTGTATTA ATTAGTATAA 24574 .......... .......... .......... .......... .......... .......... 18 AAGTTGCACT TGCAGGTGAT TTTGCAGAAT CGAAGTCTTC GTCTCGAATA TCTCTTTGCC 24634 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTGAT TTTGCAGAAT CGAAGTCTTC GTCTCGAATA TCTCTTTGCC 63 ATGTGAGTAA CTGTTGATCT ATTGATAATG AATCTATTCC CTCTTCATTA GTAATTTGAT 24694 || AT........ .......... .......... .......... .......... .......... 65 TTTAGTTTTA CTTTTGATGT GATTTATTTG TCTCATTTAG TTTGTAAAAT CGATTCACTC 24754 .......... .......... .......... .......... .......... .......... 65 TACTAGTAAG TTACAAATAG TATGTAACTT GTGTTCTCCA TACCATATGT CTTAAATAGT 24814 .......... .......... .......... .......... .......... .......... 65 TTTTTCGATT CTAAACTGTG GGTGTGCGGG TTTTAGGTTG TTAAAAATTG AGATTGCAAT 24874 .......... .......... .......... .......... .......... .......... 65 AAAAATAATG CAGAAGACTT TGATCTGGGG CAATTAAAAA GATAACAAAC TCGTCATCAT 24934 .......... .......... .......... .......... .......... .......... 65 TAGTTCATCT TTATTTTTCT AAAGAGCGAA GTGCTTGACT TAACCAACTT GTGGTTTGTT 24994 .......... .......... .......... .......... .......... .......... 65 CTTGATTGGA ACTATAAGTT GAGAGAAGTG AAGTTTTTCG GAAATTTAAT AATATTATAA 25054 .......... .......... .......... .......... .......... .......... 65 AATTTTGTGA TTTTTTCCCA TTGTTTATAT AATATAGCAA AATCAACAGT TTGATTGTAC 25114 .......... .......... .......... .......... .......... .......... 65 TGATTCGTTG TTAGTTTTCC AATGTGCAAA TACTTACCAG GTTAATACAT TTATTTAAGG 25174 .......... .......... .......... .......... .......... .......... 65 CTTTACTAGT GATCTAATAT TCCTAAGTAA GAAAAACAAC ATACCCCGTG TAATCCCCTA 25234 .......... .......... .......... .......... .......... .......... 65 AGTAGTGTAA TCCCATGGGT GTTGTCTGGG AGGGTGATGT TTACACAACC TTATCAAAGC 25294 .......... .......... .......... .......... .......... .......... 65 AAGTATATAA GGGAAATACA ATAGCAAAAA AAGTCATGCT GAAAAACAAT TAAGAAGAGA 25354 .......... .......... .......... .......... .......... .......... 65 AAAAGTGACA ACAACAATCA ATATGATAAC TCAAGCAAAG GAAATAACAA TAATACCACA 25414 .......... .......... .......... .......... .......... .......... 65 ATTGAAAAAT AAAATAGTAG GAAAGTAATA GGAACAATAC GGATAAGGAA ATTAGACAAC 25474 .......... .......... .......... .......... .......... .......... 65 GTTAGACCAC CTACTTACCT TCTGCCCTTA ATCTCATATC TTCCTATCTA GAGACATGTC 25534 .......... .......... .......... .......... .......... .......... 65 ATGTTCTTTG TAAGCAGTAG AAGTGCCAAG CCTAAGTAGA TGGATGAATT ATGTTCTCTG 25594 .......... .......... .......... .......... .......... .......... 65 TCATGGCTGG AAATTGTTTA AGTAGAGAGT GAGTGTGAGT ATCCATACCC GAACCTATCC 25654 .......... .......... .......... .......... .......... .......... 65 TGTTATATTT GGATTGTTAC TAGTTTTAGG ACTTCACCAT AGCCTTCAAC AATTAGAAGC 25714 .......... .......... .......... .......... .......... .......... 65 TTAACTTACT TTACCTTTAA TCCTGCACCT CGCGTTCATG ATATCTATTC AACCGTGCGT 25774 .......... .......... .......... .......... .......... .......... 65 CAGAGACACG GTCGAAGCAC GCCCGTCCAG TGTGCTTCTT TCACGACATT CTGTAGTATA 25834 .......... .......... .......... .......... .......... .......... 65 ACTATCAGCT TATACGTTGT GACTGTATTG ACTAACCTGA TGTTATCTGT AAATGTTAGA 25894 .......... .......... .......... .......... .......... .......... 65 AGTCAATTCT TTTTCAAGTT TCCACTTTCA ATATCAATGT CATCGGGGTA AAATCTCTCA 25954 .......... .......... .......... .......... .......... .......... 65 ACCATGGTAG CATGCTCCCA TTTCTTTCTT GGCATAGAAC TTAAAATTTC AACTTGTTCT 26014 .......... .......... .......... .......... .......... .......... 65 AAACGCGTAG CCATTTATTT TTGAAAATGA AACATACTTA ATAGATTTTT TAACAATATG 26074 .......... .......... .......... .......... .......... .......... 65 CACAGAAGGG TGCCACAAAC TCCAGCGCAT CTGTATGTAT GTATGTATGT ATGTATACAT 26134 .......... .......... .......... .......... .......... .......... 65 ATATCAGGAA ATATGGTGCA CTGCTACTTA CTGAAAATAC AACAAGTTCT ACTTAATTTC 26194 .......... .......... .......... .......... .......... .......... 65 ATTTATTAAA TAGAAGTGCT TTGAGATAAT CCTTATCCTT CCTCTGATGC AACTGCTTAT 26254 .......... .......... .......... .......... .......... .......... 65 TTTTAAACGT ATCCTTTCTT TGGTGCAACT TCATGTATTA AAAAATACTT TCATGTCTCA 26314 .......... .......... .......... .......... .......... .......... 65 ATTTTAATAT TTTGGACACA GCTGCATATT ATTCTATAGA TATTATTATA TTTATTGGTT 26374 .......... .......... .......... .......... .......... .......... 65 TTTAGTGAAA AGCAACTTTT CTAGTGTACA CTCCATGTTG AAGCTTCCGA TAAATCTATT 26434 .......... .......... .......... .......... .......... .......... 65 CTGTCAGAGT CTTCTTCTTC TTGGTGCTTT CCTGATAACT AGTGTCAGAA GAATCTTATA 26494 .......... .......... .......... .......... .......... .......... 65 TTATTCTTAG AGCCTGTTTG AATTGCTTAG TTGATGTGCT TCTAAGCGCT TTTGTTGTGT 26554 .......... .......... .......... .......... .......... .......... 65 TTCAGTAAAA TAGTCCGTCA GTTAGAATTC CTAAATTGTG ATTTTTGGCT TATAAGACTA 26614 .......... .......... .......... .......... .......... .......... 65 AGCCCAAACA AACAGGCTCT TAGACTAATC ATTAAAATGA TTTACAAATA TTCAGCCGTT 26674 .......... .......... .......... .......... .......... .......... 65 GTTAAAATGG CAGTTAGACT GCGTTTTGGT AATTAATGAC AAGTGACAAC TCAGTCACTA 26734 .......... .......... .......... .......... .......... .......... 65 CTGAATTTGT TTTGGTAAGA TACGTGAAAA AGCTTGAATG CAAATTTGAT TAGTCTACAA 26794 .......... .......... .......... .......... .......... .......... 65 TCCCCTAATA CCACTTCTCT AGTTGTATCT GTAATTTTAT ATGGGCAAGT AATTTTTGAA 26854 .......... .......... .......... .......... .......... .......... 65 GTATGCTTTA CTCTTCAAGT TTTGGTGTAT ATTGTGATTT ACATTCAGGA TATTTTAATT 26914 .......... .......... .......... .......... .......... .......... 65 TACACCCAAA AAAATAATTC TGCATGAAAG AAAAAAATAC TTCTCTAGTT GTATCTGTAA 26974 .......... .......... .......... .......... .......... .......... 65 TTTTATATGG GTAAGTAATT TTTGAAGTAT GCTTTACTCT TCAAGTTTTG GTGTATATTG 27034 .......... .......... .......... .......... .......... .......... 65 TGATTTACAT TCAGGATATT TTAATTTACA CCCAAAAAAA GTAATTCTGC ATGAAAGAAA 27094 .......... .......... .......... .......... .......... .......... 65 AAAAATACTT GTAGGATAGT TTCTTCCAAG TTTGAGCTTT TGCTAATATT ATCATCTCTT 27154 .......... .......... .......... .......... .......... .......... 65 AGAAGATATA TTGCTGATTT TTGTTTCTTG TTCAAGGTCG GACGAGGAAG TTGTTGACCC 27214 |||| |||||||||| |||||||||| .......... .......... .......... ......GTCG GACGAGGAAG TTGTTGACCC 89 AAAGGCGACA TTAGAAGTAA GTTGCAAGCC TAAGTGTGTA AGGCAACTAA AGGAGTATCA 27274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCGACA TTAGAAGTAA GTTGCAAGCC TAAGTGTGTA AGGCAACTAA AGGAGTATCA 149 GGTGATTCCC AATGCAATGA AATAGCCTTT CAGATATTTC AAAAGCTTTT GGTTCTTATT 27334 | G......... .......... .......... .......... .......... .......... 150 TTAATTATTG GAACTATTAC TTATCTCCTT TATTTTGGGT AGTGTGTAAG GCAACTAAAG 27394 .......... .......... .......... .......... .......... .......... 150 GGGTATCAGT TGATTCCCAA TGCAATGAAA TAACCTTTCA GTTATTTCAA AAGCTTTTGG 27454 .......... .......... .......... .......... .......... .......... 150 TTCTAATTTA ATTATTGGAA CTTTTATCTC CTTTATTTTG GGTGTTCAAT ACTTCCACTG 27514 .......... .......... .......... .......... .......... .......... 150 ATTAAACCAA TATCAGGATG AGCTATGACA TCGTTTATGT TAGTGAAAGG CTATTTCTTT 27574 .......... .......... .......... .......... .......... .......... 150 TTTTGTAATT TTTAGCATCA TCATACACTG TTTCATAGAT GGGTATAGCA GTTGAATCTT 27634 .......... .......... .......... .......... .......... .......... 150 CCTTTAGTTT GAGAATTCGA GACATTCTAG TGATAAGTGC CTTCAAATGG AACACAATGG 27694 .......... .......... .......... .......... .......... .......... 150 TATGTTTCTT ACCAATGCAT CTGATCTTTT CCTACAGTTC AAAATTCAAT GAAAAAAATT 27754 .......... .......... .......... .......... .......... .......... 150 TGAAAATGAG AGATTTTCTG AAAAATTAGT AAAAAGTAGA ATGAAAGACA ATCCTATATT 27814 .......... .......... .......... .......... .......... .......... 150 GACAAGGACA AACTTTTTTA CAATTTAGTA ATGCCCACAC TCTTTCTTGT GTATCAAAGA 27874 .......... .......... .......... .......... .......... .......... 150 TCATCGAAAT AAGCAACAAA ACTATTTCAA TAAAAAAATA CTATTTACAA GGATTTCAAT 27934 .......... .......... .......... .......... .......... .......... 150 CAAGATACCT TAGCAAGATT CTAGTTCTTT CGTAAGTTCT TGTATTTAGT GTTGTGGGAA 27994 .......... .......... .......... .......... .......... .......... 150 TTTATCTCGT CGTCTTTTTG GGGTTGCTTT TTTCAATAAA TACATTTCTT TACATAAGTT 28054 .......... .......... .......... .......... .......... .......... 150 GTATTAGTAA TCTGGGTTTA TGGATGACTG CTCTTGGTAT TGTTAGTCTA GCCTTAAACC 28114 .......... .......... .......... .......... .......... .......... 150 ATCGTTTATA TAGAGACATC AACATAATGT TTTAGCTTGG TGGAAATGAA TTCTTTTTCC 28174 .......... .......... .......... .......... .......... .......... 150 TCAGGATCCT ATTAGATAGA AACAAAGAAC AAAATAACTA GAAAGGTTGT AAGAATACCC 28234 .......... .......... .......... .......... .......... .......... 150 CTCTTCTAGA TGGATCGTCT ACAAAGCTAT TCGTTTAAAG TGTATTCAGA TCAAAAGCTC 28294 .......... .......... .......... .......... .......... .......... 150 GAATGGCAAA AGAGGGAGGA TTTGTGGCTT AGATCGTAGG TTCAAGCTCC ACACCATGCA 28354 .......... .......... .......... .......... .......... .......... 150 AAAGGAAGCC CCGTATTTAA GTGGTGAAGG GTAGAGTAAT GATCATATGT CTGTAGTGCA 28414 .......... .......... .......... .......... .......... .......... 150 TTGTATGTCC CATGATAGGT CCCATTCTTC TTCTCTTCTC CAAACAAAGT CTATGATTAT 28474 .......... .......... .......... .......... .......... .......... 150 TCATATCTAT GTTACCTTGA TATCAAAGAA GAGTTCAATC AATCCTATGT TTCCATTCCA 28534 .......... .......... .......... .......... .......... .......... 150 ACCTTCCCAT TTATCTGACT GTTGCTGAGC AGTTTATGGA TATCACACGG ACAGCCCCAG 28594 .......... .......... .......... .......... .......... .......... 150 ATGGTAAATT TTAATGTGGA CAAATTTTCG TTGATCATGC GACACTCGGA TTTGAACAGG 28654 .......... .......... .......... .......... .......... .......... 150 GAGAAAAGGA TTTGCAGTCC TCGCAGCTCT GGGCTCGCTG TCGTAAGTGG GCCTGTTTAT 28714 .......... .......... .......... .......... .......... .......... 150 GTCAACTACC CTCTAGGTTT TTTAAGTAGA AGACAACAAA CTTATTAAAT CTTTTTTTCT 28774 .......... .......... .......... .......... .......... .......... 150 GCCTCAATTT TTTTTAATCA GTTCTTAGTT CACTTTTCCC TTTTCCCTTA AAACCATTTC 28834 .......... .......... .......... .......... .......... .......... 150 TTCTGAACTA ATTGAAATAC ACATAAATTT TTCCAAGTAA GAACCACAAA ACCATTATTT 28894 .......... .......... .......... .......... .......... .......... 150 TCCATAAATC AGACCTAAAA CAATCCTCCC TAAAACATTG AAAACAAAGT GTTTTCTTAC 28954 .......... .......... .......... .......... .......... .......... 150 AAAAATACAA ATCTGGAACT AAGTAAGTTA ATACCTTTTC TATCTTTCAT GAATCTAGTG 29014 .......... .......... .......... .......... .......... .......... 150 TAGTTTCATA TTTTATTTCT TCTGTACTGT AATTATGATC TTCACAAGAA CTCAGAGTGG 29074 .......... .......... .......... .......... .......... .......... 150 CACAAAAATG TCTTGCATTA TGTTATGTTA TGTTAGACCT GAAAATTTTA TATTTGGAAA 29134 .......... .......... .......... .......... .......... .......... 150 ATATCAAATA TTATGAACAT AATATGTACT GATTCCAGGA CCTACTACTC TAAGTATGTA 29194 .......... .......... .......... .......... .......... .......... 150 CTGATTCCAG GATCTACTTC AAATCAATTA AAATAGCAGG TCAAGAGAAT TTTCTTTGCA 29254 .......... .......... .......... .......... .......... .......... 150 TGTTACTCTG ATGGGATGAA CCAATATAGG GACTTCATCT GTGATTATTT GGTCTCTCTA 29314 .......... .......... .......... .......... .......... .......... 150 AGAAGCCCCC CAAAAAAACA TGTTTCTGGC CTCCAAATAC TTCTCGCTCT TTAGATTAGG 29374 .......... .......... .......... .......... .......... .......... 150 CACTCTAGAT TTCAGCTGGT TAGCGGTTGC TGGTATTTGT ATGATTTTTT GTTTCTTTGT 29434 .......... .......... .......... .......... .......... .......... 150 TTTGTGTGTA GCATGTTCTT AGATCCAAGA GGAATTGCAA GACATCAATC AGATTTTCTC 29494 .......... .......... .......... .......... .......... .......... 150 TTCAACCTTG CCTTTTATTC TGTTTGATTG CTTTCTATGG GGTCCTTTTG TTGTTTGTAT 29554 .......... .......... .......... .......... .......... .......... 150 CGCCAACAGT TTGCTGTAAG AGTTTTTGAT GATGAGGAGT GTTACTTCAA GGTTTTCTTT 29614 .......... .......... .......... .......... .......... .......... 150 CTCCAAGACT CTGATTTCTA ATATAATTTT GATGCCATTA AACGTTTTCC AATTTATTTT 29674 .......... .......... .......... .......... .......... .......... 150 TTATTTTTCT ACTTGTTCTT CATATACTAC CTCTGCAAAC ATCTTTGTAA CCAACTTAAT 29734 .......... .......... .......... .......... .......... .......... 150 TATTTGTGCA ACGAATGTGC TTTGGTTGGG GAGTCTGAGT TTCTAACTTT TGGAAGGATT 29794 .......... .......... .......... .......... .......... .......... 150 TTGGTCTCTC TTTCTGCGAG AAGTGAAAGA TTTTTTTTTT TGGAAGGATT CCAGAACAAT 29854 .......... .......... .......... .......... .......... .......... 150 GATGTCTCGT TTAGTTGTGC TAACTGTGCA CCTCATATAA CAATACAGTA ACATATTTGA 29914 .......... .......... .......... .......... .......... .......... 150 TCTTCAGAAC AATTGCGCAT GATCTGTTTT TTTTTTTAAT TTTAACTAAT GGATGTGGAA 29974 .......... .......... .......... .......... .......... .......... 150 GTATTGCACC TTAGAATGAA GGTGATATTC CTTCACTAAC CTCCCTGGGA AGTATATATT 30034 .......... .......... .......... .......... .......... .......... 150 ACTTTCATCA AGATATACAT GTATATTTTG TGTTTTTGTT TTGTCCGGCA GAGGGGACTT 30094 .......... .......... .......... .......... .......... .......... 150 CATTTGTGGA TTAAGTTTGA TGGATATTTA GTCCACGAGG TGTATCATTT TCTATCTTGA 30154 .......... .......... .......... .......... .......... .......... 150 AAAACACATT AAGTGTTAGT TAGGGTTGGT TATTTATCGG GTGCACATCG TTCCCACTGC 30214 .......... .......... .......... .......... .......... .......... 150 TCTATGATGG TTAACTGTTG ACCTGCTTTA TTTATTGATC TGACAATTCT TTTTGGCAAA 30274 .......... .......... .......... .......... .......... .......... 150 TGTCACATTA ATGTTTATTA AACAGGACAA GATTACTTGC ACTTTGTCAT TAGTTGCAGT 30334 .......... .......... .......... .......... .......... .......... 150 CCCAAAAACT TTTAACTTGC AATATTTGAT TATTTTCATC TTTCTGTTTG TCATATCCCC 30394 .......... .......... .......... .......... .......... .......... 150 CTTCTTTCCC TTTTTCCTGT CTTTTGGCGG GGTGGGGGTG GATAATGAAT TTCTGAAGAA 30454 .......... .......... .......... .......... .......... .......... 150 GGCCAGCTTT GTTGCTTCAA AATTAGTAGT GGTTTTCTTA CTTTATGGGT CTCATTCTGC 30514 .......... .......... .......... .......... .......... .......... 150 ATCCTACAGG CATGTACTAA AAGGATAGAA GGTGATGAAT CAGGGCACAA ACATTGCACT 30574 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CATGTACTAA AAGGATAGAA GGTGATGAAT CAGGGCACAA ACATTGCACT 201 GGACAGTATT TTGATTATTG GCACTGCATC GACAAATGTG TAAGCTCCCT TTTCCGGTTG 30634 |||||||||| |||||||||| |||||||||| ||||||||| GGACAGTATT TTGATTATTG GCACTGCATC GACAAATGT. .......... .......... 240 TTTGGCATTT TTGTGTTGGG GTTTTCAGGG TGTGCTGCCT CTTGATTCTT TTCTCCGTTG 30694 .......... .......... .......... .......... .......... .......... 240 TTGTCGTTTG TTGTTTTCTT ACCTTTTCGT GGAACTGTTT GCACAGGTTG CTGCGAAGTT 30754 |||| |||||||||| .......... .......... .......... .......... ......GTTG CTGCGAAGTT 254 GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT TATCTTCTTT 30814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT TATCTTCTTT 314 TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC TTGTAACCCT 30874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC TTGTAACCCT 374 TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA AAAAGTGATT 30934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA AAAAGTGATT 434 AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGAATT 30983 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGAATT 483 hqPGS_C09HBa0099P03.1-2+_SGN-E242585+ (24395 24412,24590 24636,27191 27275,30524 30613,30741 30983) ******************************************************************************** EST sequence 7 +strand 482 n (File: SGN-E242586+) 1 TCATTCTAGA ACAGTCAGGT GATTTTGCAG AATCGAAGTC TTCGTCTCGA ATATCTCTTT 61 GCCATGTCGG ACGAGGAAGT TGTTGACCCA AAGGCGACAT TAGAAGTAAG TTGCAAGCCT 121 AAGTGTGTAA GGCAACTAAA GGAGTATCAG GCATGTACTA AAAGGATAGA AGGTGATGAA 181 TCAGGGCACA AACATTGCAC TGGACAGTAT TTTGATTATT GGCACTGCAT CGACAAATGT 241 GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC 301 AATTTATCTT CTTTTTGGTT GTTGAACAAG TCATTACCAT ATTATTCCTC ACTGTGCTGA 361 AGACTTGTAA CCCTTTCAAT CAACTTGGTT GCTGCATGGA AAATTTTGAA CTATGCACAT 421 CTTAAAAAGT GATTAATAAA TCATACTCGT GGGTTGAATT GGACCCTTTT ATTCGTTCGA 481 AT Predicted gene structure (within gDNA segment 23837 to 31592): Exon 1 24395 24412 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 19 65 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 66 150 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 151 240 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30982 ( 242 n); cDNA 241 482 ( 242 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E242586+ 1.000 482 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E242586+ (24395 24412,24590 24636,27191 27275,30524 30613,30741 30982) Alignment (genomic DNA sequence = upper lines): TCATTCTAGA ACAGTCAGGT TTACCCGTTG CTCCTCTTCT CTGCATTTTG ATCTGTTTAC 24454 |||||||||| |||||||| TCATTCTAGA ACAGTCAG.. .......... .......... .......... .......... 18 TCTTTACTTT TTTCTTCCGA TCTGCATATT TAGGTTTTGT TATTCAATAT TTTTGTTTAT 24514 .......... .......... .......... .......... .......... .......... 18 TTTGTACATA TGGAGGATTT TTGGTGTTTC AGCTGGTTAA TTTTGTATTA ATTAGTATAA 24574 .......... .......... .......... .......... .......... .......... 18 AAGTTGCACT TGCAGGTGAT TTTGCAGAAT CGAAGTCTTC GTCTCGAATA TCTCTTTGCC 24634 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTGAT TTTGCAGAAT CGAAGTCTTC GTCTCGAATA TCTCTTTGCC 63 ATGTGAGTAA CTGTTGATCT ATTGATAATG AATCTATTCC CTCTTCATTA GTAATTTGAT 24694 || AT........ .......... .......... .......... .......... .......... 65 TTTAGTTTTA CTTTTGATGT GATTTATTTG TCTCATTTAG TTTGTAAAAT CGATTCACTC 24754 .......... .......... .......... .......... .......... .......... 65 TACTAGTAAG TTACAAATAG TATGTAACTT GTGTTCTCCA TACCATATGT CTTAAATAGT 24814 .......... .......... .......... .......... .......... .......... 65 TTTTTCGATT CTAAACTGTG GGTGTGCGGG TTTTAGGTTG TTAAAAATTG AGATTGCAAT 24874 .......... .......... .......... .......... .......... .......... 65 AAAAATAATG CAGAAGACTT TGATCTGGGG CAATTAAAAA GATAACAAAC TCGTCATCAT 24934 .......... .......... .......... .......... .......... .......... 65 TAGTTCATCT TTATTTTTCT AAAGAGCGAA GTGCTTGACT TAACCAACTT GTGGTTTGTT 24994 .......... .......... .......... .......... .......... .......... 65 CTTGATTGGA ACTATAAGTT GAGAGAAGTG AAGTTTTTCG GAAATTTAAT AATATTATAA 25054 .......... .......... .......... .......... .......... .......... 65 AATTTTGTGA TTTTTTCCCA TTGTTTATAT AATATAGCAA AATCAACAGT TTGATTGTAC 25114 .......... .......... .......... .......... .......... .......... 65 TGATTCGTTG TTAGTTTTCC AATGTGCAAA TACTTACCAG GTTAATACAT TTATTTAAGG 25174 .......... .......... .......... .......... .......... .......... 65 CTTTACTAGT GATCTAATAT TCCTAAGTAA GAAAAACAAC ATACCCCGTG TAATCCCCTA 25234 .......... .......... .......... .......... .......... .......... 65 AGTAGTGTAA TCCCATGGGT GTTGTCTGGG AGGGTGATGT TTACACAACC TTATCAAAGC 25294 .......... .......... .......... .......... .......... .......... 65 AAGTATATAA GGGAAATACA ATAGCAAAAA AAGTCATGCT GAAAAACAAT TAAGAAGAGA 25354 .......... .......... .......... .......... .......... .......... 65 AAAAGTGACA ACAACAATCA ATATGATAAC TCAAGCAAAG GAAATAACAA TAATACCACA 25414 .......... .......... .......... .......... .......... .......... 65 ATTGAAAAAT AAAATAGTAG GAAAGTAATA GGAACAATAC GGATAAGGAA ATTAGACAAC 25474 .......... .......... .......... .......... .......... .......... 65 GTTAGACCAC CTACTTACCT TCTGCCCTTA ATCTCATATC TTCCTATCTA GAGACATGTC 25534 .......... .......... .......... .......... .......... .......... 65 ATGTTCTTTG TAAGCAGTAG AAGTGCCAAG CCTAAGTAGA TGGATGAATT ATGTTCTCTG 25594 .......... .......... .......... .......... .......... .......... 65 TCATGGCTGG AAATTGTTTA AGTAGAGAGT GAGTGTGAGT ATCCATACCC GAACCTATCC 25654 .......... .......... .......... .......... .......... .......... 65 TGTTATATTT GGATTGTTAC TAGTTTTAGG ACTTCACCAT AGCCTTCAAC AATTAGAAGC 25714 .......... .......... .......... .......... .......... .......... 65 TTAACTTACT TTACCTTTAA TCCTGCACCT CGCGTTCATG ATATCTATTC AACCGTGCGT 25774 .......... .......... .......... .......... .......... .......... 65 CAGAGACACG GTCGAAGCAC GCCCGTCCAG TGTGCTTCTT TCACGACATT CTGTAGTATA 25834 .......... .......... .......... .......... .......... .......... 65 ACTATCAGCT TATACGTTGT GACTGTATTG ACTAACCTGA TGTTATCTGT AAATGTTAGA 25894 .......... .......... .......... .......... .......... .......... 65 AGTCAATTCT TTTTCAAGTT TCCACTTTCA ATATCAATGT CATCGGGGTA AAATCTCTCA 25954 .......... .......... .......... .......... .......... .......... 65 ACCATGGTAG CATGCTCCCA TTTCTTTCTT GGCATAGAAC TTAAAATTTC AACTTGTTCT 26014 .......... .......... .......... .......... .......... .......... 65 AAACGCGTAG CCATTTATTT TTGAAAATGA AACATACTTA ATAGATTTTT TAACAATATG 26074 .......... .......... .......... .......... .......... .......... 65 CACAGAAGGG TGCCACAAAC TCCAGCGCAT CTGTATGTAT GTATGTATGT ATGTATACAT 26134 .......... .......... .......... .......... .......... .......... 65 ATATCAGGAA ATATGGTGCA CTGCTACTTA CTGAAAATAC AACAAGTTCT ACTTAATTTC 26194 .......... .......... .......... .......... .......... .......... 65 ATTTATTAAA TAGAAGTGCT TTGAGATAAT CCTTATCCTT CCTCTGATGC AACTGCTTAT 26254 .......... .......... .......... .......... .......... .......... 65 TTTTAAACGT ATCCTTTCTT TGGTGCAACT TCATGTATTA AAAAATACTT TCATGTCTCA 26314 .......... .......... .......... .......... .......... .......... 65 ATTTTAATAT TTTGGACACA GCTGCATATT ATTCTATAGA TATTATTATA TTTATTGGTT 26374 .......... .......... .......... .......... .......... .......... 65 TTTAGTGAAA AGCAACTTTT CTAGTGTACA CTCCATGTTG AAGCTTCCGA TAAATCTATT 26434 .......... .......... .......... .......... .......... .......... 65 CTGTCAGAGT CTTCTTCTTC TTGGTGCTTT CCTGATAACT AGTGTCAGAA GAATCTTATA 26494 .......... .......... .......... .......... .......... .......... 65 TTATTCTTAG AGCCTGTTTG AATTGCTTAG TTGATGTGCT TCTAAGCGCT TTTGTTGTGT 26554 .......... .......... .......... .......... .......... .......... 65 TTCAGTAAAA TAGTCCGTCA GTTAGAATTC CTAAATTGTG ATTTTTGGCT TATAAGACTA 26614 .......... .......... .......... .......... .......... .......... 65 AGCCCAAACA AACAGGCTCT TAGACTAATC ATTAAAATGA TTTACAAATA TTCAGCCGTT 26674 .......... .......... .......... .......... .......... .......... 65 GTTAAAATGG CAGTTAGACT GCGTTTTGGT AATTAATGAC AAGTGACAAC TCAGTCACTA 26734 .......... .......... .......... .......... .......... .......... 65 CTGAATTTGT TTTGGTAAGA TACGTGAAAA AGCTTGAATG CAAATTTGAT TAGTCTACAA 26794 .......... .......... .......... .......... .......... .......... 65 TCCCCTAATA CCACTTCTCT AGTTGTATCT GTAATTTTAT ATGGGCAAGT AATTTTTGAA 26854 .......... .......... .......... .......... .......... .......... 65 GTATGCTTTA CTCTTCAAGT TTTGGTGTAT ATTGTGATTT ACATTCAGGA TATTTTAATT 26914 .......... .......... .......... .......... .......... .......... 65 TACACCCAAA AAAATAATTC TGCATGAAAG AAAAAAATAC TTCTCTAGTT GTATCTGTAA 26974 .......... .......... .......... .......... .......... .......... 65 TTTTATATGG GTAAGTAATT TTTGAAGTAT GCTTTACTCT TCAAGTTTTG GTGTATATTG 27034 .......... .......... .......... .......... .......... .......... 65 TGATTTACAT TCAGGATATT TTAATTTACA CCCAAAAAAA GTAATTCTGC ATGAAAGAAA 27094 .......... .......... .......... .......... .......... .......... 65 AAAAATACTT GTAGGATAGT TTCTTCCAAG TTTGAGCTTT TGCTAATATT ATCATCTCTT 27154 .......... .......... .......... .......... .......... .......... 65 AGAAGATATA TTGCTGATTT TTGTTTCTTG TTCAAGGTCG GACGAGGAAG TTGTTGACCC 27214 |||| |||||||||| |||||||||| .......... .......... .......... ......GTCG GACGAGGAAG TTGTTGACCC 89 AAAGGCGACA TTAGAAGTAA GTTGCAAGCC TAAGTGTGTA AGGCAACTAA AGGAGTATCA 27274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCGACA TTAGAAGTAA GTTGCAAGCC TAAGTGTGTA AGGCAACTAA AGGAGTATCA 149 GGTGATTCCC AATGCAATGA AATAGCCTTT CAGATATTTC AAAAGCTTTT GGTTCTTATT 27334 | G......... .......... .......... .......... .......... .......... 150 TTAATTATTG GAACTATTAC TTATCTCCTT TATTTTGGGT AGTGTGTAAG GCAACTAAAG 27394 .......... .......... .......... .......... .......... .......... 150 GGGTATCAGT TGATTCCCAA TGCAATGAAA TAACCTTTCA GTTATTTCAA AAGCTTTTGG 27454 .......... .......... .......... .......... .......... .......... 150 TTCTAATTTA ATTATTGGAA CTTTTATCTC CTTTATTTTG GGTGTTCAAT ACTTCCACTG 27514 .......... .......... .......... .......... .......... .......... 150 ATTAAACCAA TATCAGGATG AGCTATGACA TCGTTTATGT TAGTGAAAGG CTATTTCTTT 27574 .......... .......... .......... .......... .......... .......... 150 TTTTGTAATT TTTAGCATCA TCATACACTG TTTCATAGAT GGGTATAGCA GTTGAATCTT 27634 .......... .......... .......... .......... .......... .......... 150 CCTTTAGTTT GAGAATTCGA GACATTCTAG TGATAAGTGC CTTCAAATGG AACACAATGG 27694 .......... .......... .......... .......... .......... .......... 150 TATGTTTCTT ACCAATGCAT CTGATCTTTT CCTACAGTTC AAAATTCAAT GAAAAAAATT 27754 .......... .......... .......... .......... .......... .......... 150 TGAAAATGAG AGATTTTCTG AAAAATTAGT AAAAAGTAGA ATGAAAGACA ATCCTATATT 27814 .......... .......... .......... .......... .......... .......... 150 GACAAGGACA AACTTTTTTA CAATTTAGTA ATGCCCACAC TCTTTCTTGT GTATCAAAGA 27874 .......... .......... .......... .......... .......... .......... 150 TCATCGAAAT AAGCAACAAA ACTATTTCAA TAAAAAAATA CTATTTACAA GGATTTCAAT 27934 .......... .......... .......... .......... .......... .......... 150 CAAGATACCT TAGCAAGATT CTAGTTCTTT CGTAAGTTCT TGTATTTAGT GTTGTGGGAA 27994 .......... .......... .......... .......... .......... .......... 150 TTTATCTCGT CGTCTTTTTG GGGTTGCTTT TTTCAATAAA TACATTTCTT TACATAAGTT 28054 .......... .......... .......... .......... .......... .......... 150 GTATTAGTAA TCTGGGTTTA TGGATGACTG CTCTTGGTAT TGTTAGTCTA GCCTTAAACC 28114 .......... .......... .......... .......... .......... .......... 150 ATCGTTTATA TAGAGACATC AACATAATGT TTTAGCTTGG TGGAAATGAA TTCTTTTTCC 28174 .......... .......... .......... .......... .......... .......... 150 TCAGGATCCT ATTAGATAGA AACAAAGAAC AAAATAACTA GAAAGGTTGT AAGAATACCC 28234 .......... .......... .......... .......... .......... .......... 150 CTCTTCTAGA TGGATCGTCT ACAAAGCTAT TCGTTTAAAG TGTATTCAGA TCAAAAGCTC 28294 .......... .......... .......... .......... .......... .......... 150 GAATGGCAAA AGAGGGAGGA TTTGTGGCTT AGATCGTAGG TTCAAGCTCC ACACCATGCA 28354 .......... .......... .......... .......... .......... .......... 150 AAAGGAAGCC CCGTATTTAA GTGGTGAAGG GTAGAGTAAT GATCATATGT CTGTAGTGCA 28414 .......... .......... .......... .......... .......... .......... 150 TTGTATGTCC CATGATAGGT CCCATTCTTC TTCTCTTCTC CAAACAAAGT CTATGATTAT 28474 .......... .......... .......... .......... .......... .......... 150 TCATATCTAT GTTACCTTGA TATCAAAGAA GAGTTCAATC AATCCTATGT TTCCATTCCA 28534 .......... .......... .......... .......... .......... .......... 150 ACCTTCCCAT TTATCTGACT GTTGCTGAGC AGTTTATGGA TATCACACGG ACAGCCCCAG 28594 .......... .......... .......... .......... .......... .......... 150 ATGGTAAATT TTAATGTGGA CAAATTTTCG TTGATCATGC GACACTCGGA TTTGAACAGG 28654 .......... .......... .......... .......... .......... .......... 150 GAGAAAAGGA TTTGCAGTCC TCGCAGCTCT GGGCTCGCTG TCGTAAGTGG GCCTGTTTAT 28714 .......... .......... .......... .......... .......... .......... 150 GTCAACTACC CTCTAGGTTT TTTAAGTAGA AGACAACAAA CTTATTAAAT CTTTTTTTCT 28774 .......... .......... .......... .......... .......... .......... 150 GCCTCAATTT TTTTTAATCA GTTCTTAGTT CACTTTTCCC TTTTCCCTTA AAACCATTTC 28834 .......... .......... .......... .......... .......... .......... 150 TTCTGAACTA ATTGAAATAC ACATAAATTT TTCCAAGTAA GAACCACAAA ACCATTATTT 28894 .......... .......... .......... .......... .......... .......... 150 TCCATAAATC AGACCTAAAA CAATCCTCCC TAAAACATTG AAAACAAAGT GTTTTCTTAC 28954 .......... .......... .......... .......... .......... .......... 150 AAAAATACAA ATCTGGAACT AAGTAAGTTA ATACCTTTTC TATCTTTCAT GAATCTAGTG 29014 .......... .......... .......... .......... .......... .......... 150 TAGTTTCATA TTTTATTTCT TCTGTACTGT AATTATGATC TTCACAAGAA CTCAGAGTGG 29074 .......... .......... .......... .......... .......... .......... 150 CACAAAAATG TCTTGCATTA TGTTATGTTA TGTTAGACCT GAAAATTTTA TATTTGGAAA 29134 .......... .......... .......... .......... .......... .......... 150 ATATCAAATA TTATGAACAT AATATGTACT GATTCCAGGA CCTACTACTC TAAGTATGTA 29194 .......... .......... .......... .......... .......... .......... 150 CTGATTCCAG GATCTACTTC AAATCAATTA AAATAGCAGG TCAAGAGAAT TTTCTTTGCA 29254 .......... .......... .......... .......... .......... .......... 150 TGTTACTCTG ATGGGATGAA CCAATATAGG GACTTCATCT GTGATTATTT GGTCTCTCTA 29314 .......... .......... .......... .......... .......... .......... 150 AGAAGCCCCC CAAAAAAACA TGTTTCTGGC CTCCAAATAC TTCTCGCTCT TTAGATTAGG 29374 .......... .......... .......... .......... .......... .......... 150 CACTCTAGAT TTCAGCTGGT TAGCGGTTGC TGGTATTTGT ATGATTTTTT GTTTCTTTGT 29434 .......... .......... .......... .......... .......... .......... 150 TTTGTGTGTA GCATGTTCTT AGATCCAAGA GGAATTGCAA GACATCAATC AGATTTTCTC 29494 .......... .......... .......... .......... .......... .......... 150 TTCAACCTTG CCTTTTATTC TGTTTGATTG CTTTCTATGG GGTCCTTTTG TTGTTTGTAT 29554 .......... .......... .......... .......... .......... .......... 150 CGCCAACAGT TTGCTGTAAG AGTTTTTGAT GATGAGGAGT GTTACTTCAA GGTTTTCTTT 29614 .......... .......... .......... .......... .......... .......... 150 CTCCAAGACT CTGATTTCTA ATATAATTTT GATGCCATTA AACGTTTTCC AATTTATTTT 29674 .......... .......... .......... .......... .......... .......... 150 TTATTTTTCT ACTTGTTCTT CATATACTAC CTCTGCAAAC ATCTTTGTAA CCAACTTAAT 29734 .......... .......... .......... .......... .......... .......... 150 TATTTGTGCA ACGAATGTGC TTTGGTTGGG GAGTCTGAGT TTCTAACTTT TGGAAGGATT 29794 .......... .......... .......... .......... .......... .......... 150 TTGGTCTCTC TTTCTGCGAG AAGTGAAAGA TTTTTTTTTT TGGAAGGATT CCAGAACAAT 29854 .......... .......... .......... .......... .......... .......... 150 GATGTCTCGT TTAGTTGTGC TAACTGTGCA CCTCATATAA CAATACAGTA ACATATTTGA 29914 .......... .......... .......... .......... .......... .......... 150 TCTTCAGAAC AATTGCGCAT GATCTGTTTT TTTTTTTAAT TTTAACTAAT GGATGTGGAA 29974 .......... .......... .......... .......... .......... .......... 150 GTATTGCACC TTAGAATGAA GGTGATATTC CTTCACTAAC CTCCCTGGGA AGTATATATT 30034 .......... .......... .......... .......... .......... .......... 150 ACTTTCATCA AGATATACAT GTATATTTTG TGTTTTTGTT TTGTCCGGCA GAGGGGACTT 30094 .......... .......... .......... .......... .......... .......... 150 CATTTGTGGA TTAAGTTTGA TGGATATTTA GTCCACGAGG TGTATCATTT TCTATCTTGA 30154 .......... .......... .......... .......... .......... .......... 150 AAAACACATT AAGTGTTAGT TAGGGTTGGT TATTTATCGG GTGCACATCG TTCCCACTGC 30214 .......... .......... .......... .......... .......... .......... 150 TCTATGATGG TTAACTGTTG ACCTGCTTTA TTTATTGATC TGACAATTCT TTTTGGCAAA 30274 .......... .......... .......... .......... .......... .......... 150 TGTCACATTA ATGTTTATTA AACAGGACAA GATTACTTGC ACTTTGTCAT TAGTTGCAGT 30334 .......... .......... .......... .......... .......... .......... 150 CCCAAAAACT TTTAACTTGC AATATTTGAT TATTTTCATC TTTCTGTTTG TCATATCCCC 30394 .......... .......... .......... .......... .......... .......... 150 CTTCTTTCCC TTTTTCCTGT CTTTTGGCGG GGTGGGGGTG GATAATGAAT TTCTGAAGAA 30454 .......... .......... .......... .......... .......... .......... 150 GGCCAGCTTT GTTGCTTCAA AATTAGTAGT GGTTTTCTTA CTTTATGGGT CTCATTCTGC 30514 .......... .......... .......... .......... .......... .......... 150 ATCCTACAGG CATGTACTAA AAGGATAGAA GGTGATGAAT CAGGGCACAA ACATTGCACT 30574 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CATGTACTAA AAGGATAGAA GGTGATGAAT CAGGGCACAA ACATTGCACT 201 GGACAGTATT TTGATTATTG GCACTGCATC GACAAATGTG TAAGCTCCCT TTTCCGGTTG 30634 |||||||||| |||||||||| |||||||||| ||||||||| GGACAGTATT TTGATTATTG GCACTGCATC GACAAATGT. .......... .......... 240 TTTGGCATTT TTGTGTTGGG GTTTTCAGGG TGTGCTGCCT CTTGATTCTT TTCTCCGTTG 30694 .......... .......... .......... .......... .......... .......... 240 TTGTCGTTTG TTGTTTTCTT ACCTTTTCGT GGAACTGTTT GCACAGGTTG CTGCGAAGTT 30754 |||| |||||||||| .......... .......... .......... .......... ......GTTG CTGCGAAGTT 254 GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT TATCTTCTTT 30814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT TATCTTCTTT 314 TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC TTGTAACCCT 30874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC TTGTAACCCT 374 TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA AAAAGTGATT 30934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA AAAAGTGATT 434 AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGAAT 30982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGAAT 482 hqPGS_C09HBa0099P03.1-2+_SGN-E242586+ (24395 24412,24590 24636,27191 27275,30524 30613,30741 30982) ******************************************************************************** EST sequence 58 +strand 317 n (File: SGN-E241261+) 1 TCATTCTAGA ACAGTCAGGT GATTTTGCAG AATCGAAGTC TTCGTCTCGA ATATCTCTTT 61 GCCATGTCCG ACGAGGAAGT TGTTGACCCA AAGGCGACAT TAGAAGTAAG TTGCAAGCCT 121 AAGTGTGTAA GGCAACTAAA GGAGTATCAG GCATGTACTA AAAGGATAGA AGGTGATGAA 181 TCAGGGCACA AACATTGCAC TGGACAGTAT TTTGATTATT GGCACTGCAT CGACAAATGT 241 GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC 301 AATTTATCTT CTTTTTG Predicted gene structure (within gDNA segment 23837 to 31427): Exon 1 24395 24412 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 19 65 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 3 27191 27275 ( 85 n); cDNA 66 150 ( 85 n); score: 0.988 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 151 240 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30817 ( 77 n); cDNA 241 317 ( 77 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E241261+ 0.996 317 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E241261+ (24395 24412,24590 24636,27191 27275,30524 30613,30741 30817) Alignment (genomic DNA sequence = upper lines): TCATTCTAGA ACAGTCAGGT TTACCCGTTG CTCCTCTTCT CTGCATTTTG ATCTGTTTAC 24454 |||||||||| |||||||| TCATTCTAGA ACAGTCAG.. .......... .......... .......... .......... 18 TCTTTACTTT TTTCTTCCGA TCTGCATATT TAGGTTTTGT TATTCAATAT TTTTGTTTAT 24514 .......... .......... .......... .......... .......... .......... 18 TTTGTACATA TGGAGGATTT TTGGTGTTTC AGCTGGTTAA TTTTGTATTA ATTAGTATAA 24574 .......... .......... .......... .......... .......... .......... 18 AAGTTGCACT TGCAGGTGAT TTTGCAGAAT CGAAGTCTTC GTCTCGAATA TCTCTTTGCC 24634 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTGAT TTTGCAGAAT CGAAGTCTTC GTCTCGAATA TCTCTTTGCC 63 ATGTGAGTAA CTGTTGATCT ATTGATAATG AATCTATTCC CTCTTCATTA GTAATTTGAT 24694 || AT........ .......... .......... .......... .......... .......... 65 TTTAGTTTTA CTTTTGATGT GATTTATTTG TCTCATTTAG TTTGTAAAAT CGATTCACTC 24754 .......... .......... .......... .......... .......... .......... 65 TACTAGTAAG TTACAAATAG TATGTAACTT GTGTTCTCCA TACCATATGT CTTAAATAGT 24814 .......... .......... .......... .......... .......... .......... 65 TTTTTCGATT CTAAACTGTG GGTGTGCGGG TTTTAGGTTG TTAAAAATTG AGATTGCAAT 24874 .......... .......... .......... .......... .......... .......... 65 AAAAATAATG CAGAAGACTT TGATCTGGGG CAATTAAAAA GATAACAAAC TCGTCATCAT 24934 .......... .......... .......... .......... .......... .......... 65 TAGTTCATCT TTATTTTTCT AAAGAGCGAA GTGCTTGACT TAACCAACTT GTGGTTTGTT 24994 .......... .......... .......... .......... .......... .......... 65 CTTGATTGGA ACTATAAGTT GAGAGAAGTG AAGTTTTTCG GAAATTTAAT AATATTATAA 25054 .......... .......... .......... .......... .......... .......... 65 AATTTTGTGA TTTTTTCCCA TTGTTTATAT AATATAGCAA AATCAACAGT TTGATTGTAC 25114 .......... .......... .......... .......... .......... .......... 65 TGATTCGTTG TTAGTTTTCC AATGTGCAAA TACTTACCAG GTTAATACAT TTATTTAAGG 25174 .......... .......... .......... .......... .......... .......... 65 CTTTACTAGT GATCTAATAT TCCTAAGTAA GAAAAACAAC ATACCCCGTG TAATCCCCTA 25234 .......... .......... .......... .......... .......... .......... 65 AGTAGTGTAA TCCCATGGGT GTTGTCTGGG AGGGTGATGT TTACACAACC TTATCAAAGC 25294 .......... .......... .......... .......... .......... .......... 65 AAGTATATAA GGGAAATACA ATAGCAAAAA AAGTCATGCT GAAAAACAAT TAAGAAGAGA 25354 .......... .......... .......... .......... .......... .......... 65 AAAAGTGACA ACAACAATCA ATATGATAAC TCAAGCAAAG GAAATAACAA TAATACCACA 25414 .......... .......... .......... .......... .......... .......... 65 ATTGAAAAAT AAAATAGTAG GAAAGTAATA GGAACAATAC GGATAAGGAA ATTAGACAAC 25474 .......... .......... .......... .......... .......... .......... 65 GTTAGACCAC CTACTTACCT TCTGCCCTTA ATCTCATATC TTCCTATCTA GAGACATGTC 25534 .......... .......... .......... .......... .......... .......... 65 ATGTTCTTTG TAAGCAGTAG AAGTGCCAAG CCTAAGTAGA TGGATGAATT ATGTTCTCTG 25594 .......... .......... .......... .......... .......... .......... 65 TCATGGCTGG AAATTGTTTA AGTAGAGAGT GAGTGTGAGT ATCCATACCC GAACCTATCC 25654 .......... .......... .......... .......... .......... .......... 65 TGTTATATTT GGATTGTTAC TAGTTTTAGG ACTTCACCAT AGCCTTCAAC AATTAGAAGC 25714 .......... .......... .......... .......... .......... .......... 65 TTAACTTACT TTACCTTTAA TCCTGCACCT CGCGTTCATG ATATCTATTC AACCGTGCGT 25774 .......... .......... .......... .......... .......... .......... 65 CAGAGACACG GTCGAAGCAC GCCCGTCCAG TGTGCTTCTT TCACGACATT CTGTAGTATA 25834 .......... .......... .......... .......... .......... .......... 65 ACTATCAGCT TATACGTTGT GACTGTATTG ACTAACCTGA TGTTATCTGT AAATGTTAGA 25894 .......... .......... .......... .......... .......... .......... 65 AGTCAATTCT TTTTCAAGTT TCCACTTTCA ATATCAATGT CATCGGGGTA AAATCTCTCA 25954 .......... .......... .......... .......... .......... .......... 65 ACCATGGTAG CATGCTCCCA TTTCTTTCTT GGCATAGAAC TTAAAATTTC AACTTGTTCT 26014 .......... .......... .......... .......... .......... .......... 65 AAACGCGTAG CCATTTATTT TTGAAAATGA AACATACTTA ATAGATTTTT TAACAATATG 26074 .......... .......... .......... .......... .......... .......... 65 CACAGAAGGG TGCCACAAAC TCCAGCGCAT CTGTATGTAT GTATGTATGT ATGTATACAT 26134 .......... .......... .......... .......... .......... .......... 65 ATATCAGGAA ATATGGTGCA CTGCTACTTA CTGAAAATAC AACAAGTTCT ACTTAATTTC 26194 .......... .......... .......... .......... .......... .......... 65 ATTTATTAAA TAGAAGTGCT TTGAGATAAT CCTTATCCTT CCTCTGATGC AACTGCTTAT 26254 .......... .......... .......... .......... .......... .......... 65 TTTTAAACGT ATCCTTTCTT TGGTGCAACT TCATGTATTA AAAAATACTT TCATGTCTCA 26314 .......... .......... .......... .......... .......... .......... 65 ATTTTAATAT TTTGGACACA GCTGCATATT ATTCTATAGA TATTATTATA TTTATTGGTT 26374 .......... .......... .......... .......... .......... .......... 65 TTTAGTGAAA AGCAACTTTT CTAGTGTACA CTCCATGTTG AAGCTTCCGA TAAATCTATT 26434 .......... .......... .......... .......... .......... .......... 65 CTGTCAGAGT CTTCTTCTTC TTGGTGCTTT CCTGATAACT AGTGTCAGAA GAATCTTATA 26494 .......... .......... .......... .......... .......... .......... 65 TTATTCTTAG AGCCTGTTTG AATTGCTTAG TTGATGTGCT TCTAAGCGCT TTTGTTGTGT 26554 .......... .......... .......... .......... .......... .......... 65 TTCAGTAAAA TAGTCCGTCA GTTAGAATTC CTAAATTGTG ATTTTTGGCT TATAAGACTA 26614 .......... .......... .......... .......... .......... .......... 65 AGCCCAAACA AACAGGCTCT TAGACTAATC ATTAAAATGA TTTACAAATA TTCAGCCGTT 26674 .......... .......... .......... .......... .......... .......... 65 GTTAAAATGG CAGTTAGACT GCGTTTTGGT AATTAATGAC AAGTGACAAC TCAGTCACTA 26734 .......... .......... .......... .......... .......... .......... 65 CTGAATTTGT TTTGGTAAGA TACGTGAAAA AGCTTGAATG CAAATTTGAT TAGTCTACAA 26794 .......... .......... .......... .......... .......... .......... 65 TCCCCTAATA CCACTTCTCT AGTTGTATCT GTAATTTTAT ATGGGCAAGT AATTTTTGAA 26854 .......... .......... .......... .......... .......... .......... 65 GTATGCTTTA CTCTTCAAGT TTTGGTGTAT ATTGTGATTT ACATTCAGGA TATTTTAATT 26914 .......... .......... .......... .......... .......... .......... 65 TACACCCAAA AAAATAATTC TGCATGAAAG AAAAAAATAC TTCTCTAGTT GTATCTGTAA 26974 .......... .......... .......... .......... .......... .......... 65 TTTTATATGG GTAAGTAATT TTTGAAGTAT GCTTTACTCT TCAAGTTTTG GTGTATATTG 27034 .......... .......... .......... .......... .......... .......... 65 TGATTTACAT TCAGGATATT TTAATTTACA CCCAAAAAAA GTAATTCTGC ATGAAAGAAA 27094 .......... .......... .......... .......... .......... .......... 65 AAAAATACTT GTAGGATAGT TTCTTCCAAG TTTGAGCTTT TGCTAATATT ATCATCTCTT 27154 .......... .......... .......... .......... .......... .......... 65 AGAAGATATA TTGCTGATTT TTGTTTCTTG TTCAAGGTCG GACGAGGAAG TTGTTGACCC 27214 ||| |||||||||| |||||||||| .......... .......... .......... ......GTCC GACGAGGAAG TTGTTGACCC 89 AAAGGCGACA TTAGAAGTAA GTTGCAAGCC TAAGTGTGTA AGGCAACTAA AGGAGTATCA 27274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCGACA TTAGAAGTAA GTTGCAAGCC TAAGTGTGTA AGGCAACTAA AGGAGTATCA 149 GGTGATTCCC AATGCAATGA AATAGCCTTT CAGATATTTC AAAAGCTTTT GGTTCTTATT 27334 | G......... .......... .......... .......... .......... .......... 150 TTAATTATTG GAACTATTAC TTATCTCCTT TATTTTGGGT AGTGTGTAAG GCAACTAAAG 27394 .......... .......... .......... .......... .......... .......... 150 GGGTATCAGT TGATTCCCAA TGCAATGAAA TAACCTTTCA GTTATTTCAA AAGCTTTTGG 27454 .......... .......... .......... .......... .......... .......... 150 TTCTAATTTA ATTATTGGAA CTTTTATCTC CTTTATTTTG GGTGTTCAAT ACTTCCACTG 27514 .......... .......... .......... .......... .......... .......... 150 ATTAAACCAA TATCAGGATG AGCTATGACA TCGTTTATGT TAGTGAAAGG CTATTTCTTT 27574 .......... .......... .......... .......... .......... .......... 150 TTTTGTAATT TTTAGCATCA TCATACACTG TTTCATAGAT GGGTATAGCA GTTGAATCTT 27634 .......... .......... .......... .......... .......... .......... 150 CCTTTAGTTT GAGAATTCGA GACATTCTAG TGATAAGTGC CTTCAAATGG AACACAATGG 27694 .......... .......... .......... .......... .......... .......... 150 TATGTTTCTT ACCAATGCAT CTGATCTTTT CCTACAGTTC AAAATTCAAT GAAAAAAATT 27754 .......... .......... .......... .......... .......... .......... 150 TGAAAATGAG AGATTTTCTG AAAAATTAGT AAAAAGTAGA ATGAAAGACA ATCCTATATT 27814 .......... .......... .......... .......... .......... .......... 150 GACAAGGACA AACTTTTTTA CAATTTAGTA ATGCCCACAC TCTTTCTTGT GTATCAAAGA 27874 .......... .......... .......... .......... .......... .......... 150 TCATCGAAAT AAGCAACAAA ACTATTTCAA TAAAAAAATA CTATTTACAA GGATTTCAAT 27934 .......... .......... .......... .......... .......... .......... 150 CAAGATACCT TAGCAAGATT CTAGTTCTTT CGTAAGTTCT TGTATTTAGT GTTGTGGGAA 27994 .......... .......... .......... .......... .......... .......... 150 TTTATCTCGT CGTCTTTTTG GGGTTGCTTT TTTCAATAAA TACATTTCTT TACATAAGTT 28054 .......... .......... .......... .......... .......... .......... 150 GTATTAGTAA TCTGGGTTTA TGGATGACTG CTCTTGGTAT TGTTAGTCTA GCCTTAAACC 28114 .......... .......... .......... .......... .......... .......... 150 ATCGTTTATA TAGAGACATC AACATAATGT TTTAGCTTGG TGGAAATGAA TTCTTTTTCC 28174 .......... .......... .......... .......... .......... .......... 150 TCAGGATCCT ATTAGATAGA AACAAAGAAC AAAATAACTA GAAAGGTTGT AAGAATACCC 28234 .......... .......... .......... .......... .......... .......... 150 CTCTTCTAGA TGGATCGTCT ACAAAGCTAT TCGTTTAAAG TGTATTCAGA TCAAAAGCTC 28294 .......... .......... .......... .......... .......... .......... 150 GAATGGCAAA AGAGGGAGGA TTTGTGGCTT AGATCGTAGG TTCAAGCTCC ACACCATGCA 28354 .......... .......... .......... .......... .......... .......... 150 AAAGGAAGCC CCGTATTTAA GTGGTGAAGG GTAGAGTAAT GATCATATGT CTGTAGTGCA 28414 .......... .......... .......... .......... .......... .......... 150 TTGTATGTCC CATGATAGGT CCCATTCTTC TTCTCTTCTC CAAACAAAGT CTATGATTAT 28474 .......... .......... .......... .......... .......... .......... 150 TCATATCTAT GTTACCTTGA TATCAAAGAA GAGTTCAATC AATCCTATGT TTCCATTCCA 28534 .......... .......... .......... .......... .......... .......... 150 ACCTTCCCAT TTATCTGACT GTTGCTGAGC AGTTTATGGA TATCACACGG ACAGCCCCAG 28594 .......... .......... .......... .......... .......... .......... 150 ATGGTAAATT TTAATGTGGA CAAATTTTCG TTGATCATGC GACACTCGGA TTTGAACAGG 28654 .......... .......... .......... .......... .......... .......... 150 GAGAAAAGGA TTTGCAGTCC TCGCAGCTCT GGGCTCGCTG TCGTAAGTGG GCCTGTTTAT 28714 .......... .......... .......... .......... .......... .......... 150 GTCAACTACC CTCTAGGTTT TTTAAGTAGA AGACAACAAA CTTATTAAAT CTTTTTTTCT 28774 .......... .......... .......... .......... .......... .......... 150 GCCTCAATTT TTTTTAATCA GTTCTTAGTT CACTTTTCCC TTTTCCCTTA AAACCATTTC 28834 .......... .......... .......... .......... .......... .......... 150 TTCTGAACTA ATTGAAATAC ACATAAATTT TTCCAAGTAA GAACCACAAA ACCATTATTT 28894 .......... .......... .......... .......... .......... .......... 150 TCCATAAATC AGACCTAAAA CAATCCTCCC TAAAACATTG AAAACAAAGT GTTTTCTTAC 28954 .......... .......... .......... .......... .......... .......... 150 AAAAATACAA ATCTGGAACT AAGTAAGTTA ATACCTTTTC TATCTTTCAT GAATCTAGTG 29014 .......... .......... .......... .......... .......... .......... 150 TAGTTTCATA TTTTATTTCT TCTGTACTGT AATTATGATC TTCACAAGAA CTCAGAGTGG 29074 .......... .......... .......... .......... .......... .......... 150 CACAAAAATG TCTTGCATTA TGTTATGTTA TGTTAGACCT GAAAATTTTA TATTTGGAAA 29134 .......... .......... .......... .......... .......... .......... 150 ATATCAAATA TTATGAACAT AATATGTACT GATTCCAGGA CCTACTACTC TAAGTATGTA 29194 .......... .......... .......... .......... .......... .......... 150 CTGATTCCAG GATCTACTTC AAATCAATTA AAATAGCAGG TCAAGAGAAT TTTCTTTGCA 29254 .......... .......... .......... .......... .......... .......... 150 TGTTACTCTG ATGGGATGAA CCAATATAGG GACTTCATCT GTGATTATTT GGTCTCTCTA 29314 .......... .......... .......... .......... .......... .......... 150 AGAAGCCCCC CAAAAAAACA TGTTTCTGGC CTCCAAATAC TTCTCGCTCT TTAGATTAGG 29374 .......... .......... .......... .......... .......... .......... 150 CACTCTAGAT TTCAGCTGGT TAGCGGTTGC TGGTATTTGT ATGATTTTTT GTTTCTTTGT 29434 .......... .......... .......... .......... .......... .......... 150 TTTGTGTGTA GCATGTTCTT AGATCCAAGA GGAATTGCAA GACATCAATC AGATTTTCTC 29494 .......... .......... .......... .......... .......... .......... 150 TTCAACCTTG CCTTTTATTC TGTTTGATTG CTTTCTATGG GGTCCTTTTG TTGTTTGTAT 29554 .......... .......... .......... .......... .......... .......... 150 CGCCAACAGT TTGCTGTAAG AGTTTTTGAT GATGAGGAGT GTTACTTCAA GGTTTTCTTT 29614 .......... .......... .......... .......... .......... .......... 150 CTCCAAGACT CTGATTTCTA ATATAATTTT GATGCCATTA AACGTTTTCC AATTTATTTT 29674 .......... .......... .......... .......... .......... .......... 150 TTATTTTTCT ACTTGTTCTT CATATACTAC CTCTGCAAAC ATCTTTGTAA CCAACTTAAT 29734 .......... .......... .......... .......... .......... .......... 150 TATTTGTGCA ACGAATGTGC TTTGGTTGGG GAGTCTGAGT TTCTAACTTT TGGAAGGATT 29794 .......... .......... .......... .......... .......... .......... 150 TTGGTCTCTC TTTCTGCGAG AAGTGAAAGA TTTTTTTTTT TGGAAGGATT CCAGAACAAT 29854 .......... .......... .......... .......... .......... .......... 150 GATGTCTCGT TTAGTTGTGC TAACTGTGCA CCTCATATAA CAATACAGTA ACATATTTGA 29914 .......... .......... .......... .......... .......... .......... 150 TCTTCAGAAC AATTGCGCAT GATCTGTTTT TTTTTTTAAT TTTAACTAAT GGATGTGGAA 29974 .......... .......... .......... .......... .......... .......... 150 GTATTGCACC TTAGAATGAA GGTGATATTC CTTCACTAAC CTCCCTGGGA AGTATATATT 30034 .......... .......... .......... .......... .......... .......... 150 ACTTTCATCA AGATATACAT GTATATTTTG TGTTTTTGTT TTGTCCGGCA GAGGGGACTT 30094 .......... .......... .......... .......... .......... .......... 150 CATTTGTGGA TTAAGTTTGA TGGATATTTA GTCCACGAGG TGTATCATTT TCTATCTTGA 30154 .......... .......... .......... .......... .......... .......... 150 AAAACACATT AAGTGTTAGT TAGGGTTGGT TATTTATCGG GTGCACATCG TTCCCACTGC 30214 .......... .......... .......... .......... .......... .......... 150 TCTATGATGG TTAACTGTTG ACCTGCTTTA TTTATTGATC TGACAATTCT TTTTGGCAAA 30274 .......... .......... .......... .......... .......... .......... 150 TGTCACATTA ATGTTTATTA AACAGGACAA GATTACTTGC ACTTTGTCAT TAGTTGCAGT 30334 .......... .......... .......... .......... .......... .......... 150 CCCAAAAACT TTTAACTTGC AATATTTGAT TATTTTCATC TTTCTGTTTG TCATATCCCC 30394 .......... .......... .......... .......... .......... .......... 150 CTTCTTTCCC TTTTTCCTGT CTTTTGGCGG GGTGGGGGTG GATAATGAAT TTCTGAAGAA 30454 .......... .......... .......... .......... .......... .......... 150 GGCCAGCTTT GTTGCTTCAA AATTAGTAGT GGTTTTCTTA CTTTATGGGT CTCATTCTGC 30514 .......... .......... .......... .......... .......... .......... 150 ATCCTACAGG CATGTACTAA AAGGATAGAA GGTGATGAAT CAGGGCACAA ACATTGCACT 30574 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G CATGTACTAA AAGGATAGAA GGTGATGAAT CAGGGCACAA ACATTGCACT 201 GGACAGTATT TTGATTATTG GCACTGCATC GACAAATGTG TAAGCTCCCT TTTCCGGTTG 30634 |||||||||| |||||||||| |||||||||| ||||||||| GGACAGTATT TTGATTATTG GCACTGCATC GACAAATGT. .......... .......... 240 TTTGGCATTT TTGTGTTGGG GTTTTCAGGG TGTGCTGCCT CTTGATTCTT TTCTCCGTTG 30694 .......... .......... .......... .......... .......... .......... 240 TTGTCGTTTG TTGTTTTCTT ACCTTTTCGT GGAACTGTTT GCACAGGTTG CTGCGAAGTT 30754 |||| |||||||||| .......... .......... .......... .......... ......GTTG CTGCGAAGTT 254 GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT TATCTTCTTT 30814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT TATCTTCTTT 314 TTG 30817 ||| TTG 317 hqPGS_C09HBa0099P03.1-2+_SGN-E241261+ (24395 24412,24590 24636,27191 27275,30524 30613,30741 30817) ******************************************************************************** EST sequence 77 -strand 504 n (File: SGN-E373662-) 1 TTCTAGAACA GTCAGTTGCA CTTGCAGGTG ATTTTGCAGA ATCGAAGTTT TCGTCTCGAA 61 TATCTCTTTG CCATGTCGGA CGAGGAAGTT GTTGACCCAA AGGCGACATT AAAAGTAAGT 121 TGCAAGCCTA AGTGTGTAAG GCAACTAAAG GAGTATCAGG CATGTACTAA AAGGATAGAA 181 GGTGATGAAT CAGGGCACAA ACATTGCACT GGACAGTATT TTGATTATTG GCACTGCATC 241 GACAAATGTG TTGCTGCGAA GTTGTTTGAC CATCTCAAGT AACAAGGATA TAAGTTGTTG 301 ATCCCTTGCA ATTTATTTTC TTTTTGGTTG TTGAACAAGT CATTACCATA TTATTCCTCA 361 CTGTGCTGAA GACTTGTAAC CCTTTCAATC AACTTGGTTG CTGCATGGAA AATTTTGAAC 421 TATGCACATC TTAAAAAGTG ATTAATAAAT CATACTCGTG GGTTGAATTG GACCCTTTTA 481 TTCGTTCGAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 23836 to 31721): Exon 1 24398 24412 ( 15 n); cDNA 1 15 ( 15 n); score: 1.000 Intron 1 24413 24577 ( 165 n); Pd: 0.978 (s: 0), Pa: 0.000 (s: 0.98) Exon 2 24578 24636 ( 59 n); cDNA 16 74 ( 59 n); score: 0.983 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 0.98), Pa: 0.998 (s: 0.98) Exon 3 27191 27275 ( 85 n); cDNA 75 159 ( 85 n); score: 0.988 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 0.98), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 160 249 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30980 ( 240 n); cDNA 250 489 ( 240 n); score: 0.996 PPA cDNA 490 504 MATCH C09HBa0099P03.1-2+ SGN-E373662- 0.994 489 0.970 C PGS_C09HBa0099P03.1-2+_SGN-E373662- (24398 24412,24578 24636,27191 27275,30524 30613,30741 30980) Alignment (genomic DNA sequence = upper lines): TTCTAGAACA GTCAGGTTTA CCCGTTGCTC CTCTTCTCTG CATTTTGATC TGTTTACTCT 24457 |||||||||| ||||| TTCTAGAACA GTCAG..... .......... .......... .......... .......... 15 TTACTTTTTT CTTCCGATCT GCATATTTAG GTTTTGTTAT TCAATATTTT TGTTTATTTT 24517 .......... .......... .......... .......... .......... .......... 15 GTACATATGG AGGATTTTTG GTGTTTCAGC TGGTTAATTT TGTATTAATT AGTATAAAAG 24577 .......... .......... .......... .......... .......... .......... 15 TTGCACTTGC AGGTGATTTT GCAGAATCGA AGTCTTCGTC TCGAATATCT CTTTGCCATG 24637 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| TTGCACTTGC AGGTGATTTT GCAGAATCGA AGTTTTCGTC TCGAATATCT CTTTGCCAT. 74 TGAGTAACTG TTGATCTATT GATAATGAAT CTATTCCCTC TTCATTAGTA ATTTGATTTT 24697 .......... .......... .......... .......... .......... .......... 74 AGTTTTACTT TTGATGTGAT TTATTTGTCT CATTTAGTTT GTAAAATCGA TTCACTCTAC 24757 .......... .......... .......... .......... .......... .......... 74 TAGTAAGTTA CAAATAGTAT GTAACTTGTG TTCTCCATAC CATATGTCTT AAATAGTTTT 24817 .......... .......... .......... .......... .......... .......... 74 TTCGATTCTA AACTGTGGGT GTGCGGGTTT TAGGTTGTTA AAAATTGAGA TTGCAATAAA 24877 .......... .......... .......... .......... .......... .......... 74 AATAATGCAG AAGACTTTGA TCTGGGGCAA TTAAAAAGAT AACAAACTCG TCATCATTAG 24937 .......... .......... .......... .......... .......... .......... 74 TTCATCTTTA TTTTTCTAAA GAGCGAAGTG CTTGACTTAA CCAACTTGTG GTTTGTTCTT 24997 .......... .......... .......... .......... .......... .......... 74 GATTGGAACT ATAAGTTGAG AGAAGTGAAG TTTTTCGGAA ATTTAATAAT ATTATAAAAT 25057 .......... .......... .......... .......... .......... .......... 74 TTTGTGATTT TTTCCCATTG TTTATATAAT ATAGCAAAAT CAACAGTTTG ATTGTACTGA 25117 .......... .......... .......... .......... .......... .......... 74 TTCGTTGTTA GTTTTCCAAT GTGCAAATAC TTACCAGGTT AATACATTTA TTTAAGGCTT 25177 .......... .......... .......... .......... .......... .......... 74 TACTAGTGAT CTAATATTCC TAAGTAAGAA AAACAACATA CCCCGTGTAA TCCCCTAAGT 25237 .......... .......... .......... .......... .......... .......... 74 AGTGTAATCC CATGGGTGTT GTCTGGGAGG GTGATGTTTA CACAACCTTA TCAAAGCAAG 25297 .......... .......... .......... .......... .......... .......... 74 TATATAAGGG AAATACAATA GCAAAAAAAG TCATGCTGAA AAACAATTAA GAAGAGAAAA 25357 .......... .......... .......... .......... .......... .......... 74 AGTGACAACA ACAATCAATA TGATAACTCA AGCAAAGGAA ATAACAATAA TACCACAATT 25417 .......... .......... .......... .......... .......... .......... 74 GAAAAATAAA ATAGTAGGAA AGTAATAGGA ACAATACGGA TAAGGAAATT AGACAACGTT 25477 .......... .......... .......... .......... .......... .......... 74 AGACCACCTA CTTACCTTCT GCCCTTAATC TCATATCTTC CTATCTAGAG ACATGTCATG 25537 .......... .......... .......... .......... .......... .......... 74 TTCTTTGTAA GCAGTAGAAG TGCCAAGCCT AAGTAGATGG ATGAATTATG TTCTCTGTCA 25597 .......... .......... .......... .......... .......... .......... 74 TGGCTGGAAA TTGTTTAAGT AGAGAGTGAG TGTGAGTATC CATACCCGAA CCTATCCTGT 25657 .......... .......... .......... .......... .......... .......... 74 TATATTTGGA TTGTTACTAG TTTTAGGACT TCACCATAGC CTTCAACAAT TAGAAGCTTA 25717 .......... .......... .......... .......... .......... .......... 74 ACTTACTTTA CCTTTAATCC TGCACCTCGC GTTCATGATA TCTATTCAAC CGTGCGTCAG 25777 .......... .......... .......... .......... .......... .......... 74 AGACACGGTC GAAGCACGCC CGTCCAGTGT GCTTCTTTCA CGACATTCTG TAGTATAACT 25837 .......... .......... .......... .......... .......... .......... 74 ATCAGCTTAT ACGTTGTGAC TGTATTGACT AACCTGATGT TATCTGTAAA TGTTAGAAGT 25897 .......... .......... .......... .......... .......... .......... 74 CAATTCTTTT TCAAGTTTCC ACTTTCAATA TCAATGTCAT CGGGGTAAAA TCTCTCAACC 25957 .......... .......... .......... .......... .......... .......... 74 ATGGTAGCAT GCTCCCATTT CTTTCTTGGC ATAGAACTTA AAATTTCAAC TTGTTCTAAA 26017 .......... .......... .......... .......... .......... .......... 74 CGCGTAGCCA TTTATTTTTG AAAATGAAAC ATACTTAATA GATTTTTTAA CAATATGCAC 26077 .......... .......... .......... .......... .......... .......... 74 AGAAGGGTGC CACAAACTCC AGCGCATCTG TATGTATGTA TGTATGTATG TATACATATA 26137 .......... .......... .......... .......... .......... .......... 74 TCAGGAAATA TGGTGCACTG CTACTTACTG AAAATACAAC AAGTTCTACT TAATTTCATT 26197 .......... .......... .......... .......... .......... .......... 74 TATTAAATAG AAGTGCTTTG AGATAATCCT TATCCTTCCT CTGATGCAAC TGCTTATTTT 26257 .......... .......... .......... .......... .......... .......... 74 TAAACGTATC CTTTCTTTGG TGCAACTTCA TGTATTAAAA AATACTTTCA TGTCTCAATT 26317 .......... .......... .......... .......... .......... .......... 74 TTAATATTTT GGACACAGCT GCATATTATT CTATAGATAT TATTATATTT ATTGGTTTTT 26377 .......... .......... .......... .......... .......... .......... 74 AGTGAAAAGC AACTTTTCTA GTGTACACTC CATGTTGAAG CTTCCGATAA ATCTATTCTG 26437 .......... .......... .......... .......... .......... .......... 74 TCAGAGTCTT CTTCTTCTTG GTGCTTTCCT GATAACTAGT GTCAGAAGAA TCTTATATTA 26497 .......... .......... .......... .......... .......... .......... 74 TTCTTAGAGC CTGTTTGAAT TGCTTAGTTG ATGTGCTTCT AAGCGCTTTT GTTGTGTTTC 26557 .......... .......... .......... .......... .......... .......... 74 AGTAAAATAG TCCGTCAGTT AGAATTCCTA AATTGTGATT TTTGGCTTAT AAGACTAAGC 26617 .......... .......... .......... .......... .......... .......... 74 CCAAACAAAC AGGCTCTTAG ACTAATCATT AAAATGATTT ACAAATATTC AGCCGTTGTT 26677 .......... .......... .......... .......... .......... .......... 74 AAAATGGCAG TTAGACTGCG TTTTGGTAAT TAATGACAAG TGACAACTCA GTCACTACTG 26737 .......... .......... .......... .......... .......... .......... 74 AATTTGTTTT GGTAAGATAC GTGAAAAAGC TTGAATGCAA ATTTGATTAG TCTACAATCC 26797 .......... .......... .......... .......... .......... .......... 74 CCTAATACCA CTTCTCTAGT TGTATCTGTA ATTTTATATG GGCAAGTAAT TTTTGAAGTA 26857 .......... .......... .......... .......... .......... .......... 74 TGCTTTACTC TTCAAGTTTT GGTGTATATT GTGATTTACA TTCAGGATAT TTTAATTTAC 26917 .......... .......... .......... .......... .......... .......... 74 ACCCAAAAAA ATAATTCTGC ATGAAAGAAA AAAATACTTC TCTAGTTGTA TCTGTAATTT 26977 .......... .......... .......... .......... .......... .......... 74 TATATGGGTA AGTAATTTTT GAAGTATGCT TTACTCTTCA AGTTTTGGTG TATATTGTGA 27037 .......... .......... .......... .......... .......... .......... 74 TTTACATTCA GGATATTTTA ATTTACACCC AAAAAAAGTA ATTCTGCATG AAAGAAAAAA 27097 .......... .......... .......... .......... .......... .......... 74 AATACTTGTA GGATAGTTTC TTCCAAGTTT GAGCTTTTGC TAATATTATC ATCTCTTAGA 27157 .......... .......... .......... .......... .......... .......... 74 AGATATATTG CTGATTTTTG TTTCTTGTTC AAGGTCGGAC GAGGAAGTTG TTGACCCAAA 27217 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTCGGAC GAGGAAGTTG TTGACCCAAA 101 GGCGACATTA GAAGTAAGTT GCAAGCCTAA GTGTGTAAGG CAACTAAAGG AGTATCAGGT 27277 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGCGACATTA AAAGTAAGTT GCAAGCCTAA GTGTGTAAGG CAACTAAAGG AGTATCAG.. 159 GATTCCCAAT GCAATGAAAT AGCCTTTCAG ATATTTCAAA AGCTTTTGGT TCTTATTTTA 27337 .......... .......... .......... .......... .......... .......... 159 ATTATTGGAA CTATTACTTA TCTCCTTTAT TTTGGGTAGT GTGTAAGGCA ACTAAAGGGG 27397 .......... .......... .......... .......... .......... .......... 159 TATCAGTTGA TTCCCAATGC AATGAAATAA CCTTTCAGTT ATTTCAAAAG CTTTTGGTTC 27457 .......... .......... .......... .......... .......... .......... 159 TAATTTAATT ATTGGAACTT TTATCTCCTT TATTTTGGGT GTTCAATACT TCCACTGATT 27517 .......... .......... .......... .......... .......... .......... 159 AAACCAATAT CAGGATGAGC TATGACATCG TTTATGTTAG TGAAAGGCTA TTTCTTTTTT 27577 .......... .......... .......... .......... .......... .......... 159 TGTAATTTTT AGCATCATCA TACACTGTTT CATAGATGGG TATAGCAGTT GAATCTTCCT 27637 .......... .......... .......... .......... .......... .......... 159 TTAGTTTGAG AATTCGAGAC ATTCTAGTGA TAAGTGCCTT CAAATGGAAC ACAATGGTAT 27697 .......... .......... .......... .......... .......... .......... 159 GTTTCTTACC AATGCATCTG ATCTTTTCCT ACAGTTCAAA ATTCAATGAA AAAAATTTGA 27757 .......... .......... .......... .......... .......... .......... 159 AAATGAGAGA TTTTCTGAAA AATTAGTAAA AAGTAGAATG AAAGACAATC CTATATTGAC 27817 .......... .......... .......... .......... .......... .......... 159 AAGGACAAAC TTTTTTACAA TTTAGTAATG CCCACACTCT TTCTTGTGTA TCAAAGATCA 27877 .......... .......... .......... .......... .......... .......... 159 TCGAAATAAG CAACAAAACT ATTTCAATAA AAAAATACTA TTTACAAGGA TTTCAATCAA 27937 .......... .......... .......... .......... .......... .......... 159 GATACCTTAG CAAGATTCTA GTTCTTTCGT AAGTTCTTGT ATTTAGTGTT GTGGGAATTT 27997 .......... .......... .......... .......... .......... .......... 159 ATCTCGTCGT CTTTTTGGGG TTGCTTTTTT CAATAAATAC ATTTCTTTAC ATAAGTTGTA 28057 .......... .......... .......... .......... .......... .......... 159 TTAGTAATCT GGGTTTATGG ATGACTGCTC TTGGTATTGT TAGTCTAGCC TTAAACCATC 28117 .......... .......... .......... .......... .......... .......... 159 GTTTATATAG AGACATCAAC ATAATGTTTT AGCTTGGTGG AAATGAATTC TTTTTCCTCA 28177 .......... .......... .......... .......... .......... .......... 159 GGATCCTATT AGATAGAAAC AAAGAACAAA ATAACTAGAA AGGTTGTAAG AATACCCCTC 28237 .......... .......... .......... .......... .......... .......... 159 TTCTAGATGG ATCGTCTACA AAGCTATTCG TTTAAAGTGT ATTCAGATCA AAAGCTCGAA 28297 .......... .......... .......... .......... .......... .......... 159 TGGCAAAAGA GGGAGGATTT GTGGCTTAGA TCGTAGGTTC AAGCTCCACA CCATGCAAAA 28357 .......... .......... .......... .......... .......... .......... 159 GGAAGCCCCG TATTTAAGTG GTGAAGGGTA GAGTAATGAT CATATGTCTG TAGTGCATTG 28417 .......... .......... .......... .......... .......... .......... 159 TATGTCCCAT GATAGGTCCC ATTCTTCTTC TCTTCTCCAA ACAAAGTCTA TGATTATTCA 28477 .......... .......... .......... .......... .......... .......... 159 TATCTATGTT ACCTTGATAT CAAAGAAGAG TTCAATCAAT CCTATGTTTC CATTCCAACC 28537 .......... .......... .......... .......... .......... .......... 159 TTCCCATTTA TCTGACTGTT GCTGAGCAGT TTATGGATAT CACACGGACA GCCCCAGATG 28597 .......... .......... .......... .......... .......... .......... 159 GTAAATTTTA ATGTGGACAA ATTTTCGTTG ATCATGCGAC ACTCGGATTT GAACAGGGAG 28657 .......... .......... .......... .......... .......... .......... 159 AAAAGGATTT GCAGTCCTCG CAGCTCTGGG CTCGCTGTCG TAAGTGGGCC TGTTTATGTC 28717 .......... .......... .......... .......... .......... .......... 159 AACTACCCTC TAGGTTTTTT AAGTAGAAGA CAACAAACTT ATTAAATCTT TTTTTCTGCC 28777 .......... .......... .......... .......... .......... .......... 159 TCAATTTTTT TTAATCAGTT CTTAGTTCAC TTTTCCCTTT TCCCTTAAAA CCATTTCTTC 28837 .......... .......... .......... .......... .......... .......... 159 TGAACTAATT GAAATACACA TAAATTTTTC CAAGTAAGAA CCACAAAACC ATTATTTTCC 28897 .......... .......... .......... .......... .......... .......... 159 ATAAATCAGA CCTAAAACAA TCCTCCCTAA AACATTGAAA ACAAAGTGTT TTCTTACAAA 28957 .......... .......... .......... .......... .......... .......... 159 AATACAAATC TGGAACTAAG TAAGTTAATA CCTTTTCTAT CTTTCATGAA TCTAGTGTAG 29017 .......... .......... .......... .......... .......... .......... 159 TTTCATATTT TATTTCTTCT GTACTGTAAT TATGATCTTC ACAAGAACTC AGAGTGGCAC 29077 .......... .......... .......... .......... .......... .......... 159 AAAAATGTCT TGCATTATGT TATGTTATGT TAGACCTGAA AATTTTATAT TTGGAAAATA 29137 .......... .......... .......... .......... .......... .......... 159 TCAAATATTA TGAACATAAT ATGTACTGAT TCCAGGACCT ACTACTCTAA GTATGTACTG 29197 .......... .......... .......... .......... .......... .......... 159 ATTCCAGGAT CTACTTCAAA TCAATTAAAA TAGCAGGTCA AGAGAATTTT CTTTGCATGT 29257 .......... .......... .......... .......... .......... .......... 159 TACTCTGATG GGATGAACCA ATATAGGGAC TTCATCTGTG ATTATTTGGT CTCTCTAAGA 29317 .......... .......... .......... .......... .......... .......... 159 AGCCCCCCAA AAAAACATGT TTCTGGCCTC CAAATACTTC TCGCTCTTTA GATTAGGCAC 29377 .......... .......... .......... .......... .......... .......... 159 TCTAGATTTC AGCTGGTTAG CGGTTGCTGG TATTTGTATG ATTTTTTGTT TCTTTGTTTT 29437 .......... .......... .......... .......... .......... .......... 159 GTGTGTAGCA TGTTCTTAGA TCCAAGAGGA ATTGCAAGAC ATCAATCAGA TTTTCTCTTC 29497 .......... .......... .......... .......... .......... .......... 159 AACCTTGCCT TTTATTCTGT TTGATTGCTT TCTATGGGGT CCTTTTGTTG TTTGTATCGC 29557 .......... .......... .......... .......... .......... .......... 159 CAACAGTTTG CTGTAAGAGT TTTTGATGAT GAGGAGTGTT ACTTCAAGGT TTTCTTTCTC 29617 .......... .......... .......... .......... .......... .......... 159 CAAGACTCTG ATTTCTAATA TAATTTTGAT GCCATTAAAC GTTTTCCAAT TTATTTTTTA 29677 .......... .......... .......... .......... .......... .......... 159 TTTTTCTACT TGTTCTTCAT ATACTACCTC TGCAAACATC TTTGTAACCA ACTTAATTAT 29737 .......... .......... .......... .......... .......... .......... 159 TTGTGCAACG AATGTGCTTT GGTTGGGGAG TCTGAGTTTC TAACTTTTGG AAGGATTTTG 29797 .......... .......... .......... .......... .......... .......... 159 GTCTCTCTTT CTGCGAGAAG TGAAAGATTT TTTTTTTTGG AAGGATTCCA GAACAATGAT 29857 .......... .......... .......... .......... .......... .......... 159 GTCTCGTTTA GTTGTGCTAA CTGTGCACCT CATATAACAA TACAGTAACA TATTTGATCT 29917 .......... .......... .......... .......... .......... .......... 159 TCAGAACAAT TGCGCATGAT CTGTTTTTTT TTTTAATTTT AACTAATGGA TGTGGAAGTA 29977 .......... .......... .......... .......... .......... .......... 159 TTGCACCTTA GAATGAAGGT GATATTCCTT CACTAACCTC CCTGGGAAGT ATATATTACT 30037 .......... .......... .......... .......... .......... .......... 159 TTCATCAAGA TATACATGTA TATTTTGTGT TTTTGTTTTG TCCGGCAGAG GGGACTTCAT 30097 .......... .......... .......... .......... .......... .......... 159 TTGTGGATTA AGTTTGATGG ATATTTAGTC CACGAGGTGT ATCATTTTCT ATCTTGAAAA 30157 .......... .......... .......... .......... .......... .......... 159 ACACATTAAG TGTTAGTTAG GGTTGGTTAT TTATCGGGTG CACATCGTTC CCACTGCTCT 30217 .......... .......... .......... .......... .......... .......... 159 ATGATGGTTA ACTGTTGACC TGCTTTATTT ATTGATCTGA CAATTCTTTT TGGCAAATGT 30277 .......... .......... .......... .......... .......... .......... 159 CACATTAATG TTTATTAAAC AGGACAAGAT TACTTGCACT TTGTCATTAG TTGCAGTCCC 30337 .......... .......... .......... .......... .......... .......... 159 AAAAACTTTT AACTTGCAAT ATTTGATTAT TTTCATCTTT CTGTTTGTCA TATCCCCCTT 30397 .......... .......... .......... .......... .......... .......... 159 CTTTCCCTTT TTCCTGTCTT TTGGCGGGGT GGGGGTGGAT AATGAATTTC TGAAGAAGGC 30457 .......... .......... .......... .......... .......... .......... 159 CAGCTTTGTT GCTTCAAAAT TAGTAGTGGT TTTCTTACTT TATGGGTCTC ATTCTGCATC 30517 .......... .......... .......... .......... .......... .......... 159 CTACAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG GGCACAAACA TTGCACTGGA 30577 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GCAT GTACTAAAAG GATAGAAGGT GATGAATCAG GGCACAAACA TTGCACTGGA 213 CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTAA GCTCCCTTTT CCGGTTGTTT 30637 |||||||||| |||||||||| |||||||||| |||||| CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGT.... .......... .......... 249 GGCATTTTTG TGTTGGGGTT TTCAGGGTGT GCTGCCTCTT GATTCTTTTC TCCGTTGTTG 30697 .......... .......... .......... .......... .......... .......... 249 TCGTTTGTTG TTTTCTTACC TTTTCGTGGA ACTGTTTGCA CAGGTTGCTG CGAAGTTGTT 30757 ||||||| |||||||||| .......... .......... .......... .......... ...GTTGCTG CGAAGTTGTT 266 TGACCATCTC AAGTAACAAG GATATAAGTT GTTGATCCCT TGCAATTTAT CTTCTTTTTG 30817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGACCATCTC AAGTAACAAG GATATAAGTT GTTGATCCCT TGCAATTTAT TTTCTTTTTG 326 GTTGTTGAAC AAGTCATTAC CATATTATTC CTCACTGTGC TGAAGACTTG TAACCCTTTC 30877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTGAAC AAGTCATTAC CATATTATTC CTCACTGTGC TGAAGACTTG TAACCCTTTC 386 AATCAACTTG GTTGCTGCAT GGAAAATTTT GAACTATGCA CATCTTAAAA AGTGATTAAT 30937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAACTTG GTTGCTGCAT GGAAAATTTT GAACTATGCA CATCTTAAAA AGTGATTAAT 446 AAATCATACT CGTGGGTTGA ATTGGACCCT TTTATTCGTT CGA 30980 |||||||||| |||||||||| |||||||||| |||||||||| ||| AAATCATACT CGTGGGTTGA ATTGGACCCT TTTATTCGTT CGA 489 hqPGS_C09HBa0099P03.1-2+_SGN-E373662- (24398 24412,24578 24636,27191 27275,30524 30613,30741 30980) ******************************************************************************** EST sequence 38 +strand 486 n (File: SGN-E354446+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT CTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC 361 TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA 421 AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGAAAAA 481 AAAAAA Predicted gene structure (within gDNA segment 23877 to 31681): Exon 1 24399 24412 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 15 61 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 62 146 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 147 236 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30981 ( 241 n); cDNA 237 477 ( 241 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E354446+ 1.000 477 0.981 C PGS_C09HBa0099P03.1-2+_SGN-E354446+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30981) Alignment (genomic DNA sequence = upper lines): TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT GTTTACTCTT 24458 |||||||||| |||| TCTAGAACAG TCAG...... .......... .......... .......... .......... 14 TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT GTTTATTTTG 24518 .......... .......... .......... .......... .......... .......... 14 TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA GTATAAAAGT 24578 .......... .......... .......... .......... .......... .......... 14 TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCATGT 24638 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| .......... .GTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCAT.. 61 GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA TTTGATTTTA 24698 .......... .......... .......... .......... .......... .......... 61 GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT TCACTCTACT 24758 .......... .......... .......... .......... .......... .......... 61 AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA AATAGTTTTT 24818 .......... .......... .......... .......... .......... .......... 61 TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT TGCAATAAAA 24878 .......... .......... .......... .......... .......... .......... 61 ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT CATCATTAGT 24938 .......... .......... .......... .......... .......... .......... 61 TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG TTTGTTCTTG 24998 .......... .......... .......... .......... .......... .......... 61 ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA TTATAAAATT 25058 .......... .......... .......... .......... .......... .......... 61 TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA TTGTACTGAT 25118 .......... .......... .......... .......... .......... .......... 61 TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT TTAAGGCTTT 25178 .......... .......... .......... .......... .......... .......... 61 ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT CCCCTAAGTA 25238 .......... .......... .......... .......... .......... .......... 61 GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT CAAAGCAAGT 25298 .......... .......... .......... .......... .......... .......... 61 ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG AAGAGAAAAA 25358 .......... .......... .......... .......... .......... .......... 61 GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT ACCACAATTG 25418 .......... .......... .......... .......... .......... .......... 61 AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA GACAACGTTA 25478 .......... .......... .......... .......... .......... .......... 61 GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA CATGTCATGT 25538 .......... .......... .......... .......... .......... .......... 61 TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT TCTCTGTCAT 25598 .......... .......... .......... .......... .......... .......... 61 GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC CTATCCTGTT 25658 .......... .......... .......... .......... .......... .......... 61 ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT AGAAGCTTAA 25718 .......... .......... .......... .......... .......... .......... 61 CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC GTGCGTCAGA 25778 .......... .......... .......... .......... .......... .......... 61 GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT AGTATAACTA 25838 .......... .......... .......... .......... .......... .......... 61 TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT GTTAGAAGTC 25898 .......... .......... .......... .......... .......... .......... 61 AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT CTCTCAACCA 25958 .......... .......... .......... .......... .......... .......... 61 TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT TGTTCTAAAC 26018 .......... .......... .......... .......... .......... .......... 61 GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC AATATGCACA 26078 .......... .......... .......... .......... .......... .......... 61 GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT ATACATATAT 26138 .......... .......... .......... .......... .......... .......... 61 CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT AATTTCATTT 26198 .......... .......... .......... .......... .......... .......... 61 ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT GCTTATTTTT 26258 .......... .......... .......... .......... .......... .......... 61 AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT GTCTCAATTT 26318 .......... .......... .......... .......... .......... .......... 61 TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA TTGGTTTTTA 26378 .......... .......... .......... .......... .......... .......... 61 GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA TCTATTCTGT 26438 .......... .......... .......... .......... .......... .......... 61 CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT CTTATATTAT 26498 .......... .......... .......... .......... .......... .......... 61 TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG TTGTGTTTCA 26558 .......... .......... .......... .......... .......... .......... 61 GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA AGACTAAGCC 26618 .......... .......... .......... .......... .......... .......... 61 CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA GCCGTTGTTA 26678 .......... .......... .......... .......... .......... .......... 61 AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG TCACTACTGA 26738 .......... .......... .......... .......... .......... .......... 61 ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT CTACAATCCC 26798 .......... .......... .......... .......... .......... .......... 61 CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT TTTGAAGTAT 26858 .......... .......... .......... .......... .......... .......... 61 GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT TTAATTTACA 26918 .......... .......... .......... .......... .......... .......... 61 CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT CTGTAATTTT 26978 .......... .......... .......... .......... .......... .......... 61 ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT ATATTGTGAT 27038 .......... .......... .......... .......... .......... .......... 61 TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA AAGAAAAAAA 27098 .......... .......... .......... .......... .......... .......... 61 ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA TCTCTTAGAA 27158 .......... .......... .......... .......... .......... .......... 61 GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT TGACCCAAAG 27218 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCGGACG AGGAAGTTGT TGACCCAAAG 89 GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAGGTG 27278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAG... 146 ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT CTTATTTTAA 27338 .......... .......... .......... .......... .......... .......... 146 TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA CTAAAGGGGT 27398 .......... .......... .......... .......... .......... .......... 146 ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC TTTTGGTTCT 27458 .......... .......... .......... .......... .......... .......... 146 AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT CCACTGATTA 27518 .......... .......... .......... .......... .......... .......... 146 AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT TTCTTTTTTT 27578 .......... .......... .......... .......... .......... .......... 146 GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG AATCTTCCTT 27638 .......... .......... .......... .......... .......... .......... 146 TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA CAATGGTATG 27698 .......... .......... .......... .......... .......... .......... 146 TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA AAAATTTGAA 27758 .......... .......... .......... .......... .......... .......... 146 AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC TATATTGACA 27818 .......... .......... .......... .......... .......... .......... 146 AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT CAAAGATCAT 27878 .......... .......... .......... .......... .......... .......... 146 CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT TTCAATCAAG 27938 .......... .......... .......... .......... .......... .......... 146 ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG TGGGAATTTA 27998 .......... .......... .......... .......... .......... .......... 146 TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA TAAGTTGTAT 28058 .......... .......... .......... .......... .......... .......... 146 TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT TAAACCATCG 28118 .......... .......... .......... .......... .......... .......... 146 TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT TTTTCCTCAG 28178 .......... .......... .......... .......... .......... .......... 146 GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA ATACCCCTCT 28238 .......... .......... .......... .......... .......... .......... 146 TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA AAGCTCGAAT 28298 .......... .......... .......... .......... .......... .......... 146 GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC CATGCAAAAG 28358 .......... .......... .......... .......... .......... .......... 146 GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT AGTGCATTGT 28418 .......... .......... .......... .......... .......... .......... 146 ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT GATTATTCAT 28478 .......... .......... .......... .......... .......... .......... 146 ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC ATTCCAACCT 28538 .......... .......... .......... .......... .......... .......... 146 TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG CCCCAGATGG 28598 .......... .......... .......... .......... .......... .......... 146 TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG AACAGGGAGA 28658 .......... .......... .......... .......... .......... .......... 146 AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT GTTTATGTCA 28718 .......... .......... .......... .......... .......... .......... 146 ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT TTTTCTGCCT 28778 .......... .......... .......... .......... .......... .......... 146 CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC CATTTCTTCT 28838 .......... .......... .......... .......... .......... .......... 146 GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA TTATTTTCCA 28898 .......... .......... .......... .......... .......... .......... 146 TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT TCTTACAAAA 28958 .......... .......... .......... .......... .......... .......... 146 ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT CTAGTGTAGT 29018 .......... .......... .......... .......... .......... .......... 146 TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA GAGTGGCACA 29078 .......... .......... .......... .......... .......... .......... 146 AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT TGGAAAATAT 29138 .......... .......... .......... .......... .......... .......... 146 CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG TATGTACTGA 29198 .......... .......... .......... .......... .......... .......... 146 TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC TTTGCATGTT 29258 .......... .......... .......... .......... .......... .......... 146 ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC TCTCTAAGAA 29318 .......... .......... .......... .......... .......... .......... 146 GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG ATTAGGCACT 29378 .......... .......... .......... .......... .......... .......... 146 CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT CTTTGTTTTG 29438 .......... .......... .......... .......... .......... .......... 146 TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT TTTCTCTTCA 29498 .......... .......... .......... .......... .......... .......... 146 ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT TTGTATCGCC 29558 .......... .......... .......... .......... .......... .......... 146 AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT TTCTTTCTCC 29618 .......... .......... .......... .......... .......... .......... 146 AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT TATTTTTTAT 29678 .......... .......... .......... .......... .......... .......... 146 TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA CTTAATTATT 29738 .......... .......... .......... .......... .......... .......... 146 TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA AGGATTTTGG 29798 .......... .......... .......... .......... .......... .......... 146 TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG AACAATGATG 29858 .......... .......... .......... .......... .......... .......... 146 TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT ATTTGATCTT 29918 .......... .......... .......... .......... .......... .......... 146 CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT GTGGAAGTAT 29978 .......... .......... .......... .......... .......... .......... 146 TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA TATATTACTT 30038 .......... .......... .......... .......... .......... .......... 146 TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG GGACTTCATT 30098 .......... .......... .......... .......... .......... .......... 146 TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA TCTTGAAAAA 30158 .......... .......... .......... .......... .......... .......... 146 CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC CACTGCTCTA 30218 .......... .......... .......... .......... .......... .......... 146 TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT GGCAAATGTC 30278 .......... .......... .......... .......... .......... .......... 146 ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT TGCAGTCCCA 30338 .......... .......... .......... .......... .......... .......... 146 AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT ATCCCCCTTC 30398 .......... .......... .......... .......... .......... .......... 146 TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT GAAGAAGGCC 30458 .......... .......... .......... .......... .......... .......... 146 AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA TTCTGCATCC 30518 .......... .......... .......... .......... .......... .......... 146 TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 30578 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 201 AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC CGGTTGTTTG 30638 |||||||||| |||||||||| |||||||||| ||||| AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... .......... 236 GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT CCGTTGTTGT 30698 .......... .......... .......... .......... .......... .......... 236 CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC GAAGTTGTTT 30758 |||||||| |||||||||| .......... .......... .......... .......... ..GTTGCTGC GAAGTTGTTT 254 GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 30818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 314 TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 30878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 374 ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 30938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 434 AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GAA 30981 |||||||||| |||||||||| |||||||||| |||||||||| ||| AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GAA 477 hqPGS_C09HBa0099P03.1-2+_SGN-E354446+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30981) ******************************************************************************** EST sequence 48 +strand 486 n (File: SGN-E356702+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT CTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC 361 TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA 421 AAAAGTGATT AATAAATCAT ACTCGTGGGT TAAATTGGAC CCTTTTATTC GTTCGAAAAA 481 AAAAAA Predicted gene structure (within gDNA segment 23877 to 31681): Exon 1 24399 24412 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 15 61 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 62 146 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 147 236 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30981 ( 241 n); cDNA 237 477 ( 241 n); score: 0.996 MATCH C09HBa0099P03.1-2+ SGN-E356702+ 0.998 477 0.981 C PGS_C09HBa0099P03.1-2+_SGN-E356702+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30981) Alignment (genomic DNA sequence = upper lines): TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT GTTTACTCTT 24458 |||||||||| |||| TCTAGAACAG TCAG...... .......... .......... .......... .......... 14 TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT GTTTATTTTG 24518 .......... .......... .......... .......... .......... .......... 14 TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA GTATAAAAGT 24578 .......... .......... .......... .......... .......... .......... 14 TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCATGT 24638 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| .......... .GTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCAT.. 61 GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA TTTGATTTTA 24698 .......... .......... .......... .......... .......... .......... 61 GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT TCACTCTACT 24758 .......... .......... .......... .......... .......... .......... 61 AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA AATAGTTTTT 24818 .......... .......... .......... .......... .......... .......... 61 TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT TGCAATAAAA 24878 .......... .......... .......... .......... .......... .......... 61 ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT CATCATTAGT 24938 .......... .......... .......... .......... .......... .......... 61 TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG TTTGTTCTTG 24998 .......... .......... .......... .......... .......... .......... 61 ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA TTATAAAATT 25058 .......... .......... .......... .......... .......... .......... 61 TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA TTGTACTGAT 25118 .......... .......... .......... .......... .......... .......... 61 TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT TTAAGGCTTT 25178 .......... .......... .......... .......... .......... .......... 61 ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT CCCCTAAGTA 25238 .......... .......... .......... .......... .......... .......... 61 GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT CAAAGCAAGT 25298 .......... .......... .......... .......... .......... .......... 61 ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG AAGAGAAAAA 25358 .......... .......... .......... .......... .......... .......... 61 GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT ACCACAATTG 25418 .......... .......... .......... .......... .......... .......... 61 AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA GACAACGTTA 25478 .......... .......... .......... .......... .......... .......... 61 GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA CATGTCATGT 25538 .......... .......... .......... .......... .......... .......... 61 TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT TCTCTGTCAT 25598 .......... .......... .......... .......... .......... .......... 61 GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC CTATCCTGTT 25658 .......... .......... .......... .......... .......... .......... 61 ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT AGAAGCTTAA 25718 .......... .......... .......... .......... .......... .......... 61 CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC GTGCGTCAGA 25778 .......... .......... .......... .......... .......... .......... 61 GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT AGTATAACTA 25838 .......... .......... .......... .......... .......... .......... 61 TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT GTTAGAAGTC 25898 .......... .......... .......... .......... .......... .......... 61 AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT CTCTCAACCA 25958 .......... .......... .......... .......... .......... .......... 61 TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT TGTTCTAAAC 26018 .......... .......... .......... .......... .......... .......... 61 GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC AATATGCACA 26078 .......... .......... .......... .......... .......... .......... 61 GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT ATACATATAT 26138 .......... .......... .......... .......... .......... .......... 61 CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT AATTTCATTT 26198 .......... .......... .......... .......... .......... .......... 61 ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT GCTTATTTTT 26258 .......... .......... .......... .......... .......... .......... 61 AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT GTCTCAATTT 26318 .......... .......... .......... .......... .......... .......... 61 TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA TTGGTTTTTA 26378 .......... .......... .......... .......... .......... .......... 61 GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA TCTATTCTGT 26438 .......... .......... .......... .......... .......... .......... 61 CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT CTTATATTAT 26498 .......... .......... .......... .......... .......... .......... 61 TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG TTGTGTTTCA 26558 .......... .......... .......... .......... .......... .......... 61 GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA AGACTAAGCC 26618 .......... .......... .......... .......... .......... .......... 61 CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA GCCGTTGTTA 26678 .......... .......... .......... .......... .......... .......... 61 AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG TCACTACTGA 26738 .......... .......... .......... .......... .......... .......... 61 ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT CTACAATCCC 26798 .......... .......... .......... .......... .......... .......... 61 CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT TTTGAAGTAT 26858 .......... .......... .......... .......... .......... .......... 61 GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT TTAATTTACA 26918 .......... .......... .......... .......... .......... .......... 61 CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT CTGTAATTTT 26978 .......... .......... .......... .......... .......... .......... 61 ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT ATATTGTGAT 27038 .......... .......... .......... .......... .......... .......... 61 TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA AAGAAAAAAA 27098 .......... .......... .......... .......... .......... .......... 61 ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA TCTCTTAGAA 27158 .......... .......... .......... .......... .......... .......... 61 GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT TGACCCAAAG 27218 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCGGACG AGGAAGTTGT TGACCCAAAG 89 GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAGGTG 27278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAG... 146 ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT CTTATTTTAA 27338 .......... .......... .......... .......... .......... .......... 146 TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA CTAAAGGGGT 27398 .......... .......... .......... .......... .......... .......... 146 ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC TTTTGGTTCT 27458 .......... .......... .......... .......... .......... .......... 146 AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT CCACTGATTA 27518 .......... .......... .......... .......... .......... .......... 146 AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT TTCTTTTTTT 27578 .......... .......... .......... .......... .......... .......... 146 GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG AATCTTCCTT 27638 .......... .......... .......... .......... .......... .......... 146 TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA CAATGGTATG 27698 .......... .......... .......... .......... .......... .......... 146 TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA AAAATTTGAA 27758 .......... .......... .......... .......... .......... .......... 146 AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC TATATTGACA 27818 .......... .......... .......... .......... .......... .......... 146 AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT CAAAGATCAT 27878 .......... .......... .......... .......... .......... .......... 146 CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT TTCAATCAAG 27938 .......... .......... .......... .......... .......... .......... 146 ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG TGGGAATTTA 27998 .......... .......... .......... .......... .......... .......... 146 TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA TAAGTTGTAT 28058 .......... .......... .......... .......... .......... .......... 146 TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT TAAACCATCG 28118 .......... .......... .......... .......... .......... .......... 146 TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT TTTTCCTCAG 28178 .......... .......... .......... .......... .......... .......... 146 GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA ATACCCCTCT 28238 .......... .......... .......... .......... .......... .......... 146 TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA AAGCTCGAAT 28298 .......... .......... .......... .......... .......... .......... 146 GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC CATGCAAAAG 28358 .......... .......... .......... .......... .......... .......... 146 GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT AGTGCATTGT 28418 .......... .......... .......... .......... .......... .......... 146 ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT GATTATTCAT 28478 .......... .......... .......... .......... .......... .......... 146 ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC ATTCCAACCT 28538 .......... .......... .......... .......... .......... .......... 146 TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG CCCCAGATGG 28598 .......... .......... .......... .......... .......... .......... 146 TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG AACAGGGAGA 28658 .......... .......... .......... .......... .......... .......... 146 AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT GTTTATGTCA 28718 .......... .......... .......... .......... .......... .......... 146 ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT TTTTCTGCCT 28778 .......... .......... .......... .......... .......... .......... 146 CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC CATTTCTTCT 28838 .......... .......... .......... .......... .......... .......... 146 GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA TTATTTTCCA 28898 .......... .......... .......... .......... .......... .......... 146 TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT TCTTACAAAA 28958 .......... .......... .......... .......... .......... .......... 146 ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT CTAGTGTAGT 29018 .......... .......... .......... .......... .......... .......... 146 TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA GAGTGGCACA 29078 .......... .......... .......... .......... .......... .......... 146 AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT TGGAAAATAT 29138 .......... .......... .......... .......... .......... .......... 146 CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG TATGTACTGA 29198 .......... .......... .......... .......... .......... .......... 146 TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC TTTGCATGTT 29258 .......... .......... .......... .......... .......... .......... 146 ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC TCTCTAAGAA 29318 .......... .......... .......... .......... .......... .......... 146 GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG ATTAGGCACT 29378 .......... .......... .......... .......... .......... .......... 146 CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT CTTTGTTTTG 29438 .......... .......... .......... .......... .......... .......... 146 TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT TTTCTCTTCA 29498 .......... .......... .......... .......... .......... .......... 146 ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT TTGTATCGCC 29558 .......... .......... .......... .......... .......... .......... 146 AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT TTCTTTCTCC 29618 .......... .......... .......... .......... .......... .......... 146 AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT TATTTTTTAT 29678 .......... .......... .......... .......... .......... .......... 146 TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA CTTAATTATT 29738 .......... .......... .......... .......... .......... .......... 146 TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA AGGATTTTGG 29798 .......... .......... .......... .......... .......... .......... 146 TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG AACAATGATG 29858 .......... .......... .......... .......... .......... .......... 146 TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT ATTTGATCTT 29918 .......... .......... .......... .......... .......... .......... 146 CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT GTGGAAGTAT 29978 .......... .......... .......... .......... .......... .......... 146 TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA TATATTACTT 30038 .......... .......... .......... .......... .......... .......... 146 TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG GGACTTCATT 30098 .......... .......... .......... .......... .......... .......... 146 TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA TCTTGAAAAA 30158 .......... .......... .......... .......... .......... .......... 146 CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC CACTGCTCTA 30218 .......... .......... .......... .......... .......... .......... 146 TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT GGCAAATGTC 30278 .......... .......... .......... .......... .......... .......... 146 ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT TGCAGTCCCA 30338 .......... .......... .......... .......... .......... .......... 146 AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT ATCCCCCTTC 30398 .......... .......... .......... .......... .......... .......... 146 TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT GAAGAAGGCC 30458 .......... .......... .......... .......... .......... .......... 146 AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA TTCTGCATCC 30518 .......... .......... .......... .......... .......... .......... 146 TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 30578 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 201 AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC CGGTTGTTTG 30638 |||||||||| |||||||||| |||||||||| ||||| AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... .......... 236 GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT CCGTTGTTGT 30698 .......... .......... .......... .......... .......... .......... 236 CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC GAAGTTGTTT 30758 |||||||| |||||||||| .......... .......... .......... .......... ..GTTGCTGC GAAGTTGTTT 254 GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 30818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 314 TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 30878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 374 ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 30938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 434 AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GAA 30981 |||||||||| ||||||| || |||||||||| |||||||||| ||| AATCATACTC GTGGGTTAAA TTGGACCCTT TTATTCGTTC GAA 477 hqPGS_C09HBa0099P03.1-2+_SGN-E356702+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30981) ******************************************************************************** EST sequence 20 +strand 504 n (File: SGN-E373663+) 1 TCTAGAACAG TCAGTTGCAC TTGCAGGTGA TTTTGCAGAA TCGAAGTCTT CGTCTCGAAT 61 ATCTCTTTGC CATGTCGGAC GAGGAAGTTG TTGACCCAAA GGCGACATTA GAAGTAAGTT 121 GCAAGCCTAA GTGTGTAAGG CAACTAAAGG AGTATCAGGC ATGTACTAAA AGGATAGAAG 181 GTGATGAATC AGGGCACAAA CATTGCACTG GACAGTATTT TGATTATTGG CACTGCATCG 241 ACAAATGTGT TGCTGCGAAG TTGTTTGACC ATCTCAAGTA ACAAGGATAT AAGTTGTTGA 301 TCCCTTGCAA TTTATCTTCT TTTTGGTTGT TGAACAAGTC ATTACCATAT TATTCCTCAC 361 TGTGCTGAAG ACTTGTAACC CTTTCAATCA ACTTGGTTGC TGCATGGAAA ATTTTGAACT 421 ATGCACATCT TAAAAAGTGA TTAATAAATC ATACTCGTGG GTTGAATTGG ACCCTTTTAT 481 TCGTTCGAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 23856 to 31741): Exon 1 24399 24412 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 24413 24577 ( 165 n); Pd: 0.978 (s: 0), Pa: 0.000 (s: 1.00) Exon 2 24578 24636 ( 59 n); cDNA 15 73 ( 59 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 74 158 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 159 248 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30980 ( 240 n); cDNA 249 488 ( 240 n); score: 1.000 PPA cDNA 489 504 MATCH C09HBa0099P03.1-2+ SGN-E373663+ 1.000 488 0.968 C PGS_C09HBa0099P03.1-2+_SGN-E373663+ (24399 24412,24578 24636,27191 27275,30524 30613,30741 30980) Alignment (genomic DNA sequence = upper lines): TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT GTTTACTCTT 24458 |||||||||| |||| TCTAGAACAG TCAG...... .......... .......... .......... .......... 14 TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT GTTTATTTTG 24518 .......... .......... .......... .......... .......... .......... 14 TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA GTATAAAAGT 24578 | .......... .......... .......... .......... .......... .........T 15 TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCATGT 24638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCAT.. 73 GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA TTTGATTTTA 24698 .......... .......... .......... .......... .......... .......... 73 GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT TCACTCTACT 24758 .......... .......... .......... .......... .......... .......... 73 AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA AATAGTTTTT 24818 .......... .......... .......... .......... .......... .......... 73 TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT TGCAATAAAA 24878 .......... .......... .......... .......... .......... .......... 73 ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT CATCATTAGT 24938 .......... .......... .......... .......... .......... .......... 73 TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG TTTGTTCTTG 24998 .......... .......... .......... .......... .......... .......... 73 ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA TTATAAAATT 25058 .......... .......... .......... .......... .......... .......... 73 TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA TTGTACTGAT 25118 .......... .......... .......... .......... .......... .......... 73 TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT TTAAGGCTTT 25178 .......... .......... .......... .......... .......... .......... 73 ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT CCCCTAAGTA 25238 .......... .......... .......... .......... .......... .......... 73 GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT CAAAGCAAGT 25298 .......... .......... .......... .......... .......... .......... 73 ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG AAGAGAAAAA 25358 .......... .......... .......... .......... .......... .......... 73 GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT ACCACAATTG 25418 .......... .......... .......... .......... .......... .......... 73 AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA GACAACGTTA 25478 .......... .......... .......... .......... .......... .......... 73 GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA CATGTCATGT 25538 .......... .......... .......... .......... .......... .......... 73 TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT TCTCTGTCAT 25598 .......... .......... .......... .......... .......... .......... 73 GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC CTATCCTGTT 25658 .......... .......... .......... .......... .......... .......... 73 ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT AGAAGCTTAA 25718 .......... .......... .......... .......... .......... .......... 73 CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC GTGCGTCAGA 25778 .......... .......... .......... .......... .......... .......... 73 GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT AGTATAACTA 25838 .......... .......... .......... .......... .......... .......... 73 TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT GTTAGAAGTC 25898 .......... .......... .......... .......... .......... .......... 73 AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT CTCTCAACCA 25958 .......... .......... .......... .......... .......... .......... 73 TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT TGTTCTAAAC 26018 .......... .......... .......... .......... .......... .......... 73 GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC AATATGCACA 26078 .......... .......... .......... .......... .......... .......... 73 GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT ATACATATAT 26138 .......... .......... .......... .......... .......... .......... 73 CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT AATTTCATTT 26198 .......... .......... .......... .......... .......... .......... 73 ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT GCTTATTTTT 26258 .......... .......... .......... .......... .......... .......... 73 AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT GTCTCAATTT 26318 .......... .......... .......... .......... .......... .......... 73 TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA TTGGTTTTTA 26378 .......... .......... .......... .......... .......... .......... 73 GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA TCTATTCTGT 26438 .......... .......... .......... .......... .......... .......... 73 CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT CTTATATTAT 26498 .......... .......... .......... .......... .......... .......... 73 TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG TTGTGTTTCA 26558 .......... .......... .......... .......... .......... .......... 73 GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA AGACTAAGCC 26618 .......... .......... .......... .......... .......... .......... 73 CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA GCCGTTGTTA 26678 .......... .......... .......... .......... .......... .......... 73 AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG TCACTACTGA 26738 .......... .......... .......... .......... .......... .......... 73 ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT CTACAATCCC 26798 .......... .......... .......... .......... .......... .......... 73 CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT TTTGAAGTAT 26858 .......... .......... .......... .......... .......... .......... 73 GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT TTAATTTACA 26918 .......... .......... .......... .......... .......... .......... 73 CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT CTGTAATTTT 26978 .......... .......... .......... .......... .......... .......... 73 ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT ATATTGTGAT 27038 .......... .......... .......... .......... .......... .......... 73 TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA AAGAAAAAAA 27098 .......... .......... .......... .......... .......... .......... 73 ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA TCTCTTAGAA 27158 .......... .......... .......... .......... .......... .......... 73 GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT TGACCCAAAG 27218 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCGGACG AGGAAGTTGT TGACCCAAAG 101 GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAGGTG 27278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAG... 158 ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT CTTATTTTAA 27338 .......... .......... .......... .......... .......... .......... 158 TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA CTAAAGGGGT 27398 .......... .......... .......... .......... .......... .......... 158 ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC TTTTGGTTCT 27458 .......... .......... .......... .......... .......... .......... 158 AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT CCACTGATTA 27518 .......... .......... .......... .......... .......... .......... 158 AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT TTCTTTTTTT 27578 .......... .......... .......... .......... .......... .......... 158 GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG AATCTTCCTT 27638 .......... .......... .......... .......... .......... .......... 158 TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA CAATGGTATG 27698 .......... .......... .......... .......... .......... .......... 158 TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA AAAATTTGAA 27758 .......... .......... .......... .......... .......... .......... 158 AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC TATATTGACA 27818 .......... .......... .......... .......... .......... .......... 158 AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT CAAAGATCAT 27878 .......... .......... .......... .......... .......... .......... 158 CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT TTCAATCAAG 27938 .......... .......... .......... .......... .......... .......... 158 ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG TGGGAATTTA 27998 .......... .......... .......... .......... .......... .......... 158 TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA TAAGTTGTAT 28058 .......... .......... .......... .......... .......... .......... 158 TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT TAAACCATCG 28118 .......... .......... .......... .......... .......... .......... 158 TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT TTTTCCTCAG 28178 .......... .......... .......... .......... .......... .......... 158 GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA ATACCCCTCT 28238 .......... .......... .......... .......... .......... .......... 158 TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA AAGCTCGAAT 28298 .......... .......... .......... .......... .......... .......... 158 GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC CATGCAAAAG 28358 .......... .......... .......... .......... .......... .......... 158 GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT AGTGCATTGT 28418 .......... .......... .......... .......... .......... .......... 158 ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT GATTATTCAT 28478 .......... .......... .......... .......... .......... .......... 158 ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC ATTCCAACCT 28538 .......... .......... .......... .......... .......... .......... 158 TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG CCCCAGATGG 28598 .......... .......... .......... .......... .......... .......... 158 TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG AACAGGGAGA 28658 .......... .......... .......... .......... .......... .......... 158 AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT GTTTATGTCA 28718 .......... .......... .......... .......... .......... .......... 158 ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT TTTTCTGCCT 28778 .......... .......... .......... .......... .......... .......... 158 CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC CATTTCTTCT 28838 .......... .......... .......... .......... .......... .......... 158 GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA TTATTTTCCA 28898 .......... .......... .......... .......... .......... .......... 158 TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT TCTTACAAAA 28958 .......... .......... .......... .......... .......... .......... 158 ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT CTAGTGTAGT 29018 .......... .......... .......... .......... .......... .......... 158 TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA GAGTGGCACA 29078 .......... .......... .......... .......... .......... .......... 158 AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT TGGAAAATAT 29138 .......... .......... .......... .......... .......... .......... 158 CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG TATGTACTGA 29198 .......... .......... .......... .......... .......... .......... 158 TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC TTTGCATGTT 29258 .......... .......... .......... .......... .......... .......... 158 ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC TCTCTAAGAA 29318 .......... .......... .......... .......... .......... .......... 158 GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG ATTAGGCACT 29378 .......... .......... .......... .......... .......... .......... 158 CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT CTTTGTTTTG 29438 .......... .......... .......... .......... .......... .......... 158 TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT TTTCTCTTCA 29498 .......... .......... .......... .......... .......... .......... 158 ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT TTGTATCGCC 29558 .......... .......... .......... .......... .......... .......... 158 AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT TTCTTTCTCC 29618 .......... .......... .......... .......... .......... .......... 158 AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT TATTTTTTAT 29678 .......... .......... .......... .......... .......... .......... 158 TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA CTTAATTATT 29738 .......... .......... .......... .......... .......... .......... 158 TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA AGGATTTTGG 29798 .......... .......... .......... .......... .......... .......... 158 TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG AACAATGATG 29858 .......... .......... .......... .......... .......... .......... 158 TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT ATTTGATCTT 29918 .......... .......... .......... .......... .......... .......... 158 CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT GTGGAAGTAT 29978 .......... .......... .......... .......... .......... .......... 158 TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA TATATTACTT 30038 .......... .......... .......... .......... .......... .......... 158 TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG GGACTTCATT 30098 .......... .......... .......... .......... .......... .......... 158 TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA TCTTGAAAAA 30158 .......... .......... .......... .......... .......... .......... 158 CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC CACTGCTCTA 30218 .......... .......... .......... .......... .......... .......... 158 TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT GGCAAATGTC 30278 .......... .......... .......... .......... .......... .......... 158 ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT TGCAGTCCCA 30338 .......... .......... .......... .......... .......... .......... 158 AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT ATCCCCCTTC 30398 .......... .......... .......... .......... .......... .......... 158 TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT GAAGAAGGCC 30458 .......... .......... .......... .......... .......... .......... 158 AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA TTCTGCATCC 30518 .......... .......... .......... .......... .......... .......... 158 TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 30578 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 213 AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC CGGTTGTTTG 30638 |||||||||| |||||||||| |||||||||| ||||| AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... .......... 248 GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT CCGTTGTTGT 30698 .......... .......... .......... .......... .......... .......... 248 CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC GAAGTTGTTT 30758 |||||||| |||||||||| .......... .......... .......... .......... ..GTTGCTGC GAAGTTGTTT 266 GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 30818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 326 TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 30878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 386 ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 30938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 446 AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GA 30980 |||||||||| |||||||||| |||||||||| |||||||||| || AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GA 488 hqPGS_C09HBa0099P03.1-2+_SGN-E373663+ (24399 24412,24578 24636,27191 27275,30524 30613,30741 30980) ******************************************************************************** EST sequence 54 +strand 498 n (File: SGN-E239491+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT GTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTGGTTGGTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC 361 TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA 421 AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGATTAA 481 AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 23877 to 31810): Exon 1 24399 24412 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 0.98) Exon 2 24590 24636 ( 47 n); cDNA 15 61 ( 47 n); score: 0.979 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 62 146 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 147 236 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30980 ( 240 n); cDNA 237 476 ( 240 n); score: 0.996 PPA cDNA 479 498 MATCH C09HBa0099P03.1-2+ SGN-E239491+ 0.998 476 0.956 C PGS_C09HBa0099P03.1-2+_SGN-E239491+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30980) Alignment (genomic DNA sequence = upper lines): TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT GTTTACTCTT 24458 |||||||||| |||| TCTAGAACAG TCAG...... .......... .......... .......... .......... 14 TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT GTTTATTTTG 24518 .......... .......... .......... .......... .......... .......... 14 TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA GTATAAAAGT 24578 .......... .......... .......... .......... .......... .......... 14 TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCATGT 24638 ||||||||| |||||||||| |||||||||| ||||||| || |||||||| .......... .GTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATGTC TTTGCCAT.. 61 GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA TTTGATTTTA 24698 .......... .......... .......... .......... .......... .......... 61 GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT TCACTCTACT 24758 .......... .......... .......... .......... .......... .......... 61 AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA AATAGTTTTT 24818 .......... .......... .......... .......... .......... .......... 61 TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT TGCAATAAAA 24878 .......... .......... .......... .......... .......... .......... 61 ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT CATCATTAGT 24938 .......... .......... .......... .......... .......... .......... 61 TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG TTTGTTCTTG 24998 .......... .......... .......... .......... .......... .......... 61 ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA TTATAAAATT 25058 .......... .......... .......... .......... .......... .......... 61 TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA TTGTACTGAT 25118 .......... .......... .......... .......... .......... .......... 61 TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT TTAAGGCTTT 25178 .......... .......... .......... .......... .......... .......... 61 ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT CCCCTAAGTA 25238 .......... .......... .......... .......... .......... .......... 61 GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT CAAAGCAAGT 25298 .......... .......... .......... .......... .......... .......... 61 ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG AAGAGAAAAA 25358 .......... .......... .......... .......... .......... .......... 61 GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT ACCACAATTG 25418 .......... .......... .......... .......... .......... .......... 61 AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA GACAACGTTA 25478 .......... .......... .......... .......... .......... .......... 61 GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA CATGTCATGT 25538 .......... .......... .......... .......... .......... .......... 61 TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT TCTCTGTCAT 25598 .......... .......... .......... .......... .......... .......... 61 GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC CTATCCTGTT 25658 .......... .......... .......... .......... .......... .......... 61 ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT AGAAGCTTAA 25718 .......... .......... .......... .......... .......... .......... 61 CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC GTGCGTCAGA 25778 .......... .......... .......... .......... .......... .......... 61 GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT AGTATAACTA 25838 .......... .......... .......... .......... .......... .......... 61 TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT GTTAGAAGTC 25898 .......... .......... .......... .......... .......... .......... 61 AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT CTCTCAACCA 25958 .......... .......... .......... .......... .......... .......... 61 TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT TGTTCTAAAC 26018 .......... .......... .......... .......... .......... .......... 61 GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC AATATGCACA 26078 .......... .......... .......... .......... .......... .......... 61 GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT ATACATATAT 26138 .......... .......... .......... .......... .......... .......... 61 CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT AATTTCATTT 26198 .......... .......... .......... .......... .......... .......... 61 ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT GCTTATTTTT 26258 .......... .......... .......... .......... .......... .......... 61 AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT GTCTCAATTT 26318 .......... .......... .......... .......... .......... .......... 61 TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA TTGGTTTTTA 26378 .......... .......... .......... .......... .......... .......... 61 GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA TCTATTCTGT 26438 .......... .......... .......... .......... .......... .......... 61 CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT CTTATATTAT 26498 .......... .......... .......... .......... .......... .......... 61 TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG TTGTGTTTCA 26558 .......... .......... .......... .......... .......... .......... 61 GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA AGACTAAGCC 26618 .......... .......... .......... .......... .......... .......... 61 CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA GCCGTTGTTA 26678 .......... .......... .......... .......... .......... .......... 61 AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG TCACTACTGA 26738 .......... .......... .......... .......... .......... .......... 61 ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT CTACAATCCC 26798 .......... .......... .......... .......... .......... .......... 61 CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT TTTGAAGTAT 26858 .......... .......... .......... .......... .......... .......... 61 GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT TTAATTTACA 26918 .......... .......... .......... .......... .......... .......... 61 CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT CTGTAATTTT 26978 .......... .......... .......... .......... .......... .......... 61 ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT ATATTGTGAT 27038 .......... .......... .......... .......... .......... .......... 61 TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA AAGAAAAAAA 27098 .......... .......... .......... .......... .......... .......... 61 ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA TCTCTTAGAA 27158 .......... .......... .......... .......... .......... .......... 61 GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT TGACCCAAAG 27218 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCGGACG AGGAAGTTGT TGACCCAAAG 89 GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAGGTG 27278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAG... 146 ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT CTTATTTTAA 27338 .......... .......... .......... .......... .......... .......... 146 TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA CTAAAGGGGT 27398 .......... .......... .......... .......... .......... .......... 146 ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC TTTTGGTTCT 27458 .......... .......... .......... .......... .......... .......... 146 AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT CCACTGATTA 27518 .......... .......... .......... .......... .......... .......... 146 AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT TTCTTTTTTT 27578 .......... .......... .......... .......... .......... .......... 146 GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG AATCTTCCTT 27638 .......... .......... .......... .......... .......... .......... 146 TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA CAATGGTATG 27698 .......... .......... .......... .......... .......... .......... 146 TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA AAAATTTGAA 27758 .......... .......... .......... .......... .......... .......... 146 AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC TATATTGACA 27818 .......... .......... .......... .......... .......... .......... 146 AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT CAAAGATCAT 27878 .......... .......... .......... .......... .......... .......... 146 CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT TTCAATCAAG 27938 .......... .......... .......... .......... .......... .......... 146 ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG TGGGAATTTA 27998 .......... .......... .......... .......... .......... .......... 146 TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA TAAGTTGTAT 28058 .......... .......... .......... .......... .......... .......... 146 TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT TAAACCATCG 28118 .......... .......... .......... .......... .......... .......... 146 TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT TTTTCCTCAG 28178 .......... .......... .......... .......... .......... .......... 146 GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA ATACCCCTCT 28238 .......... .......... .......... .......... .......... .......... 146 TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA AAGCTCGAAT 28298 .......... .......... .......... .......... .......... .......... 146 GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC CATGCAAAAG 28358 .......... .......... .......... .......... .......... .......... 146 GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT AGTGCATTGT 28418 .......... .......... .......... .......... .......... .......... 146 ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT GATTATTCAT 28478 .......... .......... .......... .......... .......... .......... 146 ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC ATTCCAACCT 28538 .......... .......... .......... .......... .......... .......... 146 TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG CCCCAGATGG 28598 .......... .......... .......... .......... .......... .......... 146 TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG AACAGGGAGA 28658 .......... .......... .......... .......... .......... .......... 146 AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT GTTTATGTCA 28718 .......... .......... .......... .......... .......... .......... 146 ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT TTTTCTGCCT 28778 .......... .......... .......... .......... .......... .......... 146 CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC CATTTCTTCT 28838 .......... .......... .......... .......... .......... .......... 146 GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA TTATTTTCCA 28898 .......... .......... .......... .......... .......... .......... 146 TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT TCTTACAAAA 28958 .......... .......... .......... .......... .......... .......... 146 ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT CTAGTGTAGT 29018 .......... .......... .......... .......... .......... .......... 146 TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA GAGTGGCACA 29078 .......... .......... .......... .......... .......... .......... 146 AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT TGGAAAATAT 29138 .......... .......... .......... .......... .......... .......... 146 CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG TATGTACTGA 29198 .......... .......... .......... .......... .......... .......... 146 TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC TTTGCATGTT 29258 .......... .......... .......... .......... .......... .......... 146 ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC TCTCTAAGAA 29318 .......... .......... .......... .......... .......... .......... 146 GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG ATTAGGCACT 29378 .......... .......... .......... .......... .......... .......... 146 CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT CTTTGTTTTG 29438 .......... .......... .......... .......... .......... .......... 146 TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT TTTCTCTTCA 29498 .......... .......... .......... .......... .......... .......... 146 ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT TTGTATCGCC 29558 .......... .......... .......... .......... .......... .......... 146 AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT TTCTTTCTCC 29618 .......... .......... .......... .......... .......... .......... 146 AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT TATTTTTTAT 29678 .......... .......... .......... .......... .......... .......... 146 TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA CTTAATTATT 29738 .......... .......... .......... .......... .......... .......... 146 TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA AGGATTTTGG 29798 .......... .......... .......... .......... .......... .......... 146 TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG AACAATGATG 29858 .......... .......... .......... .......... .......... .......... 146 TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT ATTTGATCTT 29918 .......... .......... .......... .......... .......... .......... 146 CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT GTGGAAGTAT 29978 .......... .......... .......... .......... .......... .......... 146 TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA TATATTACTT 30038 .......... .......... .......... .......... .......... .......... 146 TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG GGACTTCATT 30098 .......... .......... .......... .......... .......... .......... 146 TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA TCTTGAAAAA 30158 .......... .......... .......... .......... .......... .......... 146 CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC CACTGCTCTA 30218 .......... .......... .......... .......... .......... .......... 146 TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT GGCAAATGTC 30278 .......... .......... .......... .......... .......... .......... 146 ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT TGCAGTCCCA 30338 .......... .......... .......... .......... .......... .......... 146 AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT ATCCCCCTTC 30398 .......... .......... .......... .......... .......... .......... 146 TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT GAAGAAGGCC 30458 .......... .......... .......... .......... .......... .......... 146 AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA TTCTGCATCC 30518 .......... .......... .......... .......... .......... .......... 146 TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 30578 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 201 AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC CGGTTGTTTG 30638 |||||||||| |||||||||| |||||||||| ||||| AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... .......... 236 GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT CCGTTGTTGT 30698 .......... .......... .......... .......... .......... .......... 236 CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC GAAGTTGTTT 30758 |||||||| |||||||||| .......... .......... .......... .......... ..GTTGCTGC GAAGTTGTTT 254 GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 30818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTGG 314 TTGTTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 30878 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGAACA AGTCATTACC ATATTATTCC TCACTGTGCT GAAGACTTGT AACCCTTTCA 374 ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 30938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTTGG TTGCTGCATG GAAAATTTTG AACTATGCAC ATCTTAAAAA GTGATTAATA 434 AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GA 30980 |||||||||| |||||||||| |||||||||| |||||||||| || AATCATACTC GTGGGTTGAA TTGGACCCTT TTATTCGTTC GA 476 hqPGS_C09HBa0099P03.1-2+_SGN-E239491+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30980) ******************************************************************************** EST sequence 16 +strand 313 n (File: SGN-E231655+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT CTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTG Predicted gene structure (within gDNA segment 23877 to 31427): Exon 1 24399 24412 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 15 61 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 62 146 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 147 236 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30817 ( 77 n); cDNA 237 313 ( 77 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E231655+ 1.000 313 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E231655+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30817) Alignment (genomic DNA sequence = upper lines): TCTAGAACAG TCAGGTTTAC CCGTTGCTCC TCTTCTCTGC ATTTTGATCT GTTTACTCTT 24458 |||||||||| |||| TCTAGAACAG TCAG...... .......... .......... .......... .......... 14 TACTTTTTTC TTCCGATCTG CATATTTAGG TTTTGTTATT CAATATTTTT GTTTATTTTG 24518 .......... .......... .......... .......... .......... .......... 14 TACATATGGA GGATTTTTGG TGTTTCAGCT GGTTAATTTT GTATTAATTA GTATAAAAGT 24578 .......... .......... .......... .......... .......... .......... 14 TGCACTTGCA GGTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCATGT 24638 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| .......... .GTGATTTTG CAGAATCGAA GTCTTCGTCT CGAATATCTC TTTGCCAT.. 61 GAGTAACTGT TGATCTATTG ATAATGAATC TATTCCCTCT TCATTAGTAA TTTGATTTTA 24698 .......... .......... .......... .......... .......... .......... 61 GTTTTACTTT TGATGTGATT TATTTGTCTC ATTTAGTTTG TAAAATCGAT TCACTCTACT 24758 .......... .......... .......... .......... .......... .......... 61 AGTAAGTTAC AAATAGTATG TAACTTGTGT TCTCCATACC ATATGTCTTA AATAGTTTTT 24818 .......... .......... .......... .......... .......... .......... 61 TCGATTCTAA ACTGTGGGTG TGCGGGTTTT AGGTTGTTAA AAATTGAGAT TGCAATAAAA 24878 .......... .......... .......... .......... .......... .......... 61 ATAATGCAGA AGACTTTGAT CTGGGGCAAT TAAAAAGATA ACAAACTCGT CATCATTAGT 24938 .......... .......... .......... .......... .......... .......... 61 TCATCTTTAT TTTTCTAAAG AGCGAAGTGC TTGACTTAAC CAACTTGTGG TTTGTTCTTG 24998 .......... .......... .......... .......... .......... .......... 61 ATTGGAACTA TAAGTTGAGA GAAGTGAAGT TTTTCGGAAA TTTAATAATA TTATAAAATT 25058 .......... .......... .......... .......... .......... .......... 61 TTGTGATTTT TTCCCATTGT TTATATAATA TAGCAAAATC AACAGTTTGA TTGTACTGAT 25118 .......... .......... .......... .......... .......... .......... 61 TCGTTGTTAG TTTTCCAATG TGCAAATACT TACCAGGTTA ATACATTTAT TTAAGGCTTT 25178 .......... .......... .......... .......... .......... .......... 61 ACTAGTGATC TAATATTCCT AAGTAAGAAA AACAACATAC CCCGTGTAAT CCCCTAAGTA 25238 .......... .......... .......... .......... .......... .......... 61 GTGTAATCCC ATGGGTGTTG TCTGGGAGGG TGATGTTTAC ACAACCTTAT CAAAGCAAGT 25298 .......... .......... .......... .......... .......... .......... 61 ATATAAGGGA AATACAATAG CAAAAAAAGT CATGCTGAAA AACAATTAAG AAGAGAAAAA 25358 .......... .......... .......... .......... .......... .......... 61 GTGACAACAA CAATCAATAT GATAACTCAA GCAAAGGAAA TAACAATAAT ACCACAATTG 25418 .......... .......... .......... .......... .......... .......... 61 AAAAATAAAA TAGTAGGAAA GTAATAGGAA CAATACGGAT AAGGAAATTA GACAACGTTA 25478 .......... .......... .......... .......... .......... .......... 61 GACCACCTAC TTACCTTCTG CCCTTAATCT CATATCTTCC TATCTAGAGA CATGTCATGT 25538 .......... .......... .......... .......... .......... .......... 61 TCTTTGTAAG CAGTAGAAGT GCCAAGCCTA AGTAGATGGA TGAATTATGT TCTCTGTCAT 25598 .......... .......... .......... .......... .......... .......... 61 GGCTGGAAAT TGTTTAAGTA GAGAGTGAGT GTGAGTATCC ATACCCGAAC CTATCCTGTT 25658 .......... .......... .......... .......... .......... .......... 61 ATATTTGGAT TGTTACTAGT TTTAGGACTT CACCATAGCC TTCAACAATT AGAAGCTTAA 25718 .......... .......... .......... .......... .......... .......... 61 CTTACTTTAC CTTTAATCCT GCACCTCGCG TTCATGATAT CTATTCAACC GTGCGTCAGA 25778 .......... .......... .......... .......... .......... .......... 61 GACACGGTCG AAGCACGCCC GTCCAGTGTG CTTCTTTCAC GACATTCTGT AGTATAACTA 25838 .......... .......... .......... .......... .......... .......... 61 TCAGCTTATA CGTTGTGACT GTATTGACTA ACCTGATGTT ATCTGTAAAT GTTAGAAGTC 25898 .......... .......... .......... .......... .......... .......... 61 AATTCTTTTT CAAGTTTCCA CTTTCAATAT CAATGTCATC GGGGTAAAAT CTCTCAACCA 25958 .......... .......... .......... .......... .......... .......... 61 TGGTAGCATG CTCCCATTTC TTTCTTGGCA TAGAACTTAA AATTTCAACT TGTTCTAAAC 26018 .......... .......... .......... .......... .......... .......... 61 GCGTAGCCAT TTATTTTTGA AAATGAAACA TACTTAATAG ATTTTTTAAC AATATGCACA 26078 .......... .......... .......... .......... .......... .......... 61 GAAGGGTGCC ACAAACTCCA GCGCATCTGT ATGTATGTAT GTATGTATGT ATACATATAT 26138 .......... .......... .......... .......... .......... .......... 61 CAGGAAATAT GGTGCACTGC TACTTACTGA AAATACAACA AGTTCTACTT AATTTCATTT 26198 .......... .......... .......... .......... .......... .......... 61 ATTAAATAGA AGTGCTTTGA GATAATCCTT ATCCTTCCTC TGATGCAACT GCTTATTTTT 26258 .......... .......... .......... .......... .......... .......... 61 AAACGTATCC TTTCTTTGGT GCAACTTCAT GTATTAAAAA ATACTTTCAT GTCTCAATTT 26318 .......... .......... .......... .......... .......... .......... 61 TAATATTTTG GACACAGCTG CATATTATTC TATAGATATT ATTATATTTA TTGGTTTTTA 26378 .......... .......... .......... .......... .......... .......... 61 GTGAAAAGCA ACTTTTCTAG TGTACACTCC ATGTTGAAGC TTCCGATAAA TCTATTCTGT 26438 .......... .......... .......... .......... .......... .......... 61 CAGAGTCTTC TTCTTCTTGG TGCTTTCCTG ATAACTAGTG TCAGAAGAAT CTTATATTAT 26498 .......... .......... .......... .......... .......... .......... 61 TCTTAGAGCC TGTTTGAATT GCTTAGTTGA TGTGCTTCTA AGCGCTTTTG TTGTGTTTCA 26558 .......... .......... .......... .......... .......... .......... 61 GTAAAATAGT CCGTCAGTTA GAATTCCTAA ATTGTGATTT TTGGCTTATA AGACTAAGCC 26618 .......... .......... .......... .......... .......... .......... 61 CAAACAAACA GGCTCTTAGA CTAATCATTA AAATGATTTA CAAATATTCA GCCGTTGTTA 26678 .......... .......... .......... .......... .......... .......... 61 AAATGGCAGT TAGACTGCGT TTTGGTAATT AATGACAAGT GACAACTCAG TCACTACTGA 26738 .......... .......... .......... .......... .......... .......... 61 ATTTGTTTTG GTAAGATACG TGAAAAAGCT TGAATGCAAA TTTGATTAGT CTACAATCCC 26798 .......... .......... .......... .......... .......... .......... 61 CTAATACCAC TTCTCTAGTT GTATCTGTAA TTTTATATGG GCAAGTAATT TTTGAAGTAT 26858 .......... .......... .......... .......... .......... .......... 61 GCTTTACTCT TCAAGTTTTG GTGTATATTG TGATTTACAT TCAGGATATT TTAATTTACA 26918 .......... .......... .......... .......... .......... .......... 61 CCCAAAAAAA TAATTCTGCA TGAAAGAAAA AAATACTTCT CTAGTTGTAT CTGTAATTTT 26978 .......... .......... .......... .......... .......... .......... 61 ATATGGGTAA GTAATTTTTG AAGTATGCTT TACTCTTCAA GTTTTGGTGT ATATTGTGAT 27038 .......... .......... .......... .......... .......... .......... 61 TTACATTCAG GATATTTTAA TTTACACCCA AAAAAAGTAA TTCTGCATGA AAGAAAAAAA 27098 .......... .......... .......... .......... .......... .......... 61 ATACTTGTAG GATAGTTTCT TCCAAGTTTG AGCTTTTGCT AATATTATCA TCTCTTAGAA 27158 .......... .......... .......... .......... .......... .......... 61 GATATATTGC TGATTTTTGT TTCTTGTTCA AGGTCGGACG AGGAAGTTGT TGACCCAAAG 27218 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTCGGACG AGGAAGTTGT TGACCCAAAG 89 GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAGGTG 27278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCGACATTAG AAGTAAGTTG CAAGCCTAAG TGTGTAAGGC AACTAAAGGA GTATCAG... 146 ATTCCCAATG CAATGAAATA GCCTTTCAGA TATTTCAAAA GCTTTTGGTT CTTATTTTAA 27338 .......... .......... .......... .......... .......... .......... 146 TTATTGGAAC TATTACTTAT CTCCTTTATT TTGGGTAGTG TGTAAGGCAA CTAAAGGGGT 27398 .......... .......... .......... .......... .......... .......... 146 ATCAGTTGAT TCCCAATGCA ATGAAATAAC CTTTCAGTTA TTTCAAAAGC TTTTGGTTCT 27458 .......... .......... .......... .......... .......... .......... 146 AATTTAATTA TTGGAACTTT TATCTCCTTT ATTTTGGGTG TTCAATACTT CCACTGATTA 27518 .......... .......... .......... .......... .......... .......... 146 AACCAATATC AGGATGAGCT ATGACATCGT TTATGTTAGT GAAAGGCTAT TTCTTTTTTT 27578 .......... .......... .......... .......... .......... .......... 146 GTAATTTTTA GCATCATCAT ACACTGTTTC ATAGATGGGT ATAGCAGTTG AATCTTCCTT 27638 .......... .......... .......... .......... .......... .......... 146 TAGTTTGAGA ATTCGAGACA TTCTAGTGAT AAGTGCCTTC AAATGGAACA CAATGGTATG 27698 .......... .......... .......... .......... .......... .......... 146 TTTCTTACCA ATGCATCTGA TCTTTTCCTA CAGTTCAAAA TTCAATGAAA AAAATTTGAA 27758 .......... .......... .......... .......... .......... .......... 146 AATGAGAGAT TTTCTGAAAA ATTAGTAAAA AGTAGAATGA AAGACAATCC TATATTGACA 27818 .......... .......... .......... .......... .......... .......... 146 AGGACAAACT TTTTTACAAT TTAGTAATGC CCACACTCTT TCTTGTGTAT CAAAGATCAT 27878 .......... .......... .......... .......... .......... .......... 146 CGAAATAAGC AACAAAACTA TTTCAATAAA AAAATACTAT TTACAAGGAT TTCAATCAAG 27938 .......... .......... .......... .......... .......... .......... 146 ATACCTTAGC AAGATTCTAG TTCTTTCGTA AGTTCTTGTA TTTAGTGTTG TGGGAATTTA 27998 .......... .......... .......... .......... .......... .......... 146 TCTCGTCGTC TTTTTGGGGT TGCTTTTTTC AATAAATACA TTTCTTTACA TAAGTTGTAT 28058 .......... .......... .......... .......... .......... .......... 146 TAGTAATCTG GGTTTATGGA TGACTGCTCT TGGTATTGTT AGTCTAGCCT TAAACCATCG 28118 .......... .......... .......... .......... .......... .......... 146 TTTATATAGA GACATCAACA TAATGTTTTA GCTTGGTGGA AATGAATTCT TTTTCCTCAG 28178 .......... .......... .......... .......... .......... .......... 146 GATCCTATTA GATAGAAACA AAGAACAAAA TAACTAGAAA GGTTGTAAGA ATACCCCTCT 28238 .......... .......... .......... .......... .......... .......... 146 TCTAGATGGA TCGTCTACAA AGCTATTCGT TTAAAGTGTA TTCAGATCAA AAGCTCGAAT 28298 .......... .......... .......... .......... .......... .......... 146 GGCAAAAGAG GGAGGATTTG TGGCTTAGAT CGTAGGTTCA AGCTCCACAC CATGCAAAAG 28358 .......... .......... .......... .......... .......... .......... 146 GAAGCCCCGT ATTTAAGTGG TGAAGGGTAG AGTAATGATC ATATGTCTGT AGTGCATTGT 28418 .......... .......... .......... .......... .......... .......... 146 ATGTCCCATG ATAGGTCCCA TTCTTCTTCT CTTCTCCAAA CAAAGTCTAT GATTATTCAT 28478 .......... .......... .......... .......... .......... .......... 146 ATCTATGTTA CCTTGATATC AAAGAAGAGT TCAATCAATC CTATGTTTCC ATTCCAACCT 28538 .......... .......... .......... .......... .......... .......... 146 TCCCATTTAT CTGACTGTTG CTGAGCAGTT TATGGATATC ACACGGACAG CCCCAGATGG 28598 .......... .......... .......... .......... .......... .......... 146 TAAATTTTAA TGTGGACAAA TTTTCGTTGA TCATGCGACA CTCGGATTTG AACAGGGAGA 28658 .......... .......... .......... .......... .......... .......... 146 AAAGGATTTG CAGTCCTCGC AGCTCTGGGC TCGCTGTCGT AAGTGGGCCT GTTTATGTCA 28718 .......... .......... .......... .......... .......... .......... 146 ACTACCCTCT AGGTTTTTTA AGTAGAAGAC AACAAACTTA TTAAATCTTT TTTTCTGCCT 28778 .......... .......... .......... .......... .......... .......... 146 CAATTTTTTT TAATCAGTTC TTAGTTCACT TTTCCCTTTT CCCTTAAAAC CATTTCTTCT 28838 .......... .......... .......... .......... .......... .......... 146 GAACTAATTG AAATACACAT AAATTTTTCC AAGTAAGAAC CACAAAACCA TTATTTTCCA 28898 .......... .......... .......... .......... .......... .......... 146 TAAATCAGAC CTAAAACAAT CCTCCCTAAA ACATTGAAAA CAAAGTGTTT TCTTACAAAA 28958 .......... .......... .......... .......... .......... .......... 146 ATACAAATCT GGAACTAAGT AAGTTAATAC CTTTTCTATC TTTCATGAAT CTAGTGTAGT 29018 .......... .......... .......... .......... .......... .......... 146 TTCATATTTT ATTTCTTCTG TACTGTAATT ATGATCTTCA CAAGAACTCA GAGTGGCACA 29078 .......... .......... .......... .......... .......... .......... 146 AAAATGTCTT GCATTATGTT ATGTTATGTT AGACCTGAAA ATTTTATATT TGGAAAATAT 29138 .......... .......... .......... .......... .......... .......... 146 CAAATATTAT GAACATAATA TGTACTGATT CCAGGACCTA CTACTCTAAG TATGTACTGA 29198 .......... .......... .......... .......... .......... .......... 146 TTCCAGGATC TACTTCAAAT CAATTAAAAT AGCAGGTCAA GAGAATTTTC TTTGCATGTT 29258 .......... .......... .......... .......... .......... .......... 146 ACTCTGATGG GATGAACCAA TATAGGGACT TCATCTGTGA TTATTTGGTC TCTCTAAGAA 29318 .......... .......... .......... .......... .......... .......... 146 GCCCCCCAAA AAAACATGTT TCTGGCCTCC AAATACTTCT CGCTCTTTAG ATTAGGCACT 29378 .......... .......... .......... .......... .......... .......... 146 CTAGATTTCA GCTGGTTAGC GGTTGCTGGT ATTTGTATGA TTTTTTGTTT CTTTGTTTTG 29438 .......... .......... .......... .......... .......... .......... 146 TGTGTAGCAT GTTCTTAGAT CCAAGAGGAA TTGCAAGACA TCAATCAGAT TTTCTCTTCA 29498 .......... .......... .......... .......... .......... .......... 146 ACCTTGCCTT TTATTCTGTT TGATTGCTTT CTATGGGGTC CTTTTGTTGT TTGTATCGCC 29558 .......... .......... .......... .......... .......... .......... 146 AACAGTTTGC TGTAAGAGTT TTTGATGATG AGGAGTGTTA CTTCAAGGTT TTCTTTCTCC 29618 .......... .......... .......... .......... .......... .......... 146 AAGACTCTGA TTTCTAATAT AATTTTGATG CCATTAAACG TTTTCCAATT TATTTTTTAT 29678 .......... .......... .......... .......... .......... .......... 146 TTTTCTACTT GTTCTTCATA TACTACCTCT GCAAACATCT TTGTAACCAA CTTAATTATT 29738 .......... .......... .......... .......... .......... .......... 146 TGTGCAACGA ATGTGCTTTG GTTGGGGAGT CTGAGTTTCT AACTTTTGGA AGGATTTTGG 29798 .......... .......... .......... .......... .......... .......... 146 TCTCTCTTTC TGCGAGAAGT GAAAGATTTT TTTTTTTGGA AGGATTCCAG AACAATGATG 29858 .......... .......... .......... .......... .......... .......... 146 TCTCGTTTAG TTGTGCTAAC TGTGCACCTC ATATAACAAT ACAGTAACAT ATTTGATCTT 29918 .......... .......... .......... .......... .......... .......... 146 CAGAACAATT GCGCATGATC TGTTTTTTTT TTTAATTTTA ACTAATGGAT GTGGAAGTAT 29978 .......... .......... .......... .......... .......... .......... 146 TGCACCTTAG AATGAAGGTG ATATTCCTTC ACTAACCTCC CTGGGAAGTA TATATTACTT 30038 .......... .......... .......... .......... .......... .......... 146 TCATCAAGAT ATACATGTAT ATTTTGTGTT TTTGTTTTGT CCGGCAGAGG GGACTTCATT 30098 .......... .......... .......... .......... .......... .......... 146 TGTGGATTAA GTTTGATGGA TATTTAGTCC ACGAGGTGTA TCATTTTCTA TCTTGAAAAA 30158 .......... .......... .......... .......... .......... .......... 146 CACATTAAGT GTTAGTTAGG GTTGGTTATT TATCGGGTGC ACATCGTTCC CACTGCTCTA 30218 .......... .......... .......... .......... .......... .......... 146 TGATGGTTAA CTGTTGACCT GCTTTATTTA TTGATCTGAC AATTCTTTTT GGCAAATGTC 30278 .......... .......... .......... .......... .......... .......... 146 ACATTAATGT TTATTAAACA GGACAAGATT ACTTGCACTT TGTCATTAGT TGCAGTCCCA 30338 .......... .......... .......... .......... .......... .......... 146 AAAACTTTTA ACTTGCAATA TTTGATTATT TTCATCTTTC TGTTTGTCAT ATCCCCCTTC 30398 .......... .......... .......... .......... .......... .......... 146 TTTCCCTTTT TCCTGTCTTT TGGCGGGGTG GGGGTGGATA ATGAATTTCT GAAGAAGGCC 30458 .......... .......... .......... .......... .......... .......... 146 AGCTTTGTTG CTTCAAAATT AGTAGTGGTT TTCTTACTTT ATGGGTCTCA TTCTGCATCC 30518 .......... .......... .......... .......... .......... .......... 146 TACAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 30578 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATG TACTAAAAGG ATAGAAGGTG ATGAATCAGG GCACAAACAT TGCACTGGAC 201 AGTATTTTGA TTATTGGCAC TGCATCGACA AATGTGTAAG CTCCCTTTTC CGGTTGTTTG 30638 |||||||||| |||||||||| |||||||||| ||||| AGTATTTTGA TTATTGGCAC TGCATCGACA AATGT..... .......... .......... 236 GCATTTTTGT GTTGGGGTTT TCAGGGTGTG CTGCCTCTTG ATTCTTTTCT CCGTTGTTGT 30698 .......... .......... .......... .......... .......... .......... 236 CGTTTGTTGT TTTCTTACCT TTTCGTGGAA CTGTTTGCAC AGGTTGCTGC GAAGTTGTTT 30758 |||||||| |||||||||| .......... .......... .......... .......... ..GTTGCTGC GAAGTTGTTT 254 GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTG 30817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GACCATCTCA AGTAACAAGG ATATAAGTTG TTGATCCCTT GCAATTTATC TTCTTTTTG 313 hqPGS_C09HBa0099P03.1-2+_SGN-E231655+ (24399 24412,24590 24636,27191 27275,30524 30613,30741 30817) ******************************************************************************** EST sequence 24 +strand 440 n (File: SGN-E334870+) 1 TAGAACAGTC AGGTGATTTT GCAGAATCGA AGTCTTCGTC TCGAATATCT CTTTGCCATG 61 TCGGACGAGG AAGTTGTTGA CCCAAAGGCG ACATTAGAAG TAAGTTGCAA GCCTAAGTGT 121 GTAAGGCAAC TAAAGGAGTA TCAGGCATGT ACTAAAAGGA TAGAAGGTGA TGAATCAGGG 181 CACAAACATT GCACTGGACA GTATTTTGAT TATTGGCACT GCATCGACAA ATGTGTTGCT 241 GCGAAGTTGT TTGACCATCT CAAGTAACAA GGATATAAGT TGTTGATCCC TTGCAATTTA 301 TCTTCTTTTT GGTTGTTGAA CAAGTCATTA CCATATTATT CCTCACTGTG CTGAAGACTT 361 GTAACCCTTT CAATCAACTT GGTTGCTGCA TGGAAAATTT TGAACTATGC ACATCTTAAA 421 AAGTGATTAA TAAATCATAC Predicted gene structure (within gDNA segment 23897 to 31556): Exon 1 24401 24412 ( 12 n); cDNA 1 12 ( 12 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 (s: 0), Pa: 0.916 (s: 1.00) Exon 2 24590 24636 ( 47 n); cDNA 13 59 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 27191 27275 ( 85 n); cDNA 60 144 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 30524 30613 ( 90 n); cDNA 145 234 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 5 30741 30946 ( 206 n); cDNA 235 440 ( 206 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E334870+ 1.000 440 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E334870+ (24401 24412,24590 24636,27191 27275,30524 30613,30741 30946) Alignment (genomic DNA sequence = upper lines): TAGAACAGTC AGGTTTACCC GTTGCTCCTC TTCTCTGCAT TTTGATCTGT TTACTCTTTA 24460 |||||||||| || TAGAACAGTC AG........ .......... .......... .......... .......... 12 CTTTTTTCTT CCGATCTGCA TATTTAGGTT TTGTTATTCA ATATTTTTGT TTATTTTGTA 24520 .......... .......... .......... .......... .......... .......... 12 CATATGGAGG ATTTTTGGTG TTTCAGCTGG TTAATTTTGT ATTAATTAGT ATAAAAGTTG 24580 .......... .......... .......... .......... .......... .......... 12 CACTTGCAGG TGATTTTGCA GAATCGAAGT CTTCGTCTCG AATATCTCTT TGCCATGTGA 24640 | |||||||||| |||||||||| |||||||||| |||||||||| |||||| .........G TGATTTTGCA GAATCGAAGT CTTCGTCTCG AATATCTCTT TGCCAT.... 59 GTAACTGTTG ATCTATTGAT AATGAATCTA TTCCCTCTTC ATTAGTAATT TGATTTTAGT 24700 .......... .......... .......... .......... .......... .......... 59 TTTACTTTTG ATGTGATTTA TTTGTCTCAT TTAGTTTGTA AAATCGATTC ACTCTACTAG 24760 .......... .......... .......... .......... .......... .......... 59 TAAGTTACAA ATAGTATGTA ACTTGTGTTC TCCATACCAT ATGTCTTAAA TAGTTTTTTC 24820 .......... .......... .......... .......... .......... .......... 59 GATTCTAAAC TGTGGGTGTG CGGGTTTTAG GTTGTTAAAA ATTGAGATTG CAATAAAAAT 24880 .......... .......... .......... .......... .......... .......... 59 AATGCAGAAG ACTTTGATCT GGGGCAATTA AAAAGATAAC AAACTCGTCA TCATTAGTTC 24940 .......... .......... .......... .......... .......... .......... 59 ATCTTTATTT TTCTAAAGAG CGAAGTGCTT GACTTAACCA ACTTGTGGTT TGTTCTTGAT 25000 .......... .......... .......... .......... .......... .......... 59 TGGAACTATA AGTTGAGAGA AGTGAAGTTT TTCGGAAATT TAATAATATT ATAAAATTTT 25060 .......... .......... .......... .......... .......... .......... 59 GTGATTTTTT CCCATTGTTT ATATAATATA GCAAAATCAA CAGTTTGATT GTACTGATTC 25120 .......... .......... .......... .......... .......... .......... 59 GTTGTTAGTT TTCCAATGTG CAAATACTTA CCAGGTTAAT ACATTTATTT AAGGCTTTAC 25180 .......... .......... .......... .......... .......... .......... 59 TAGTGATCTA ATATTCCTAA GTAAGAAAAA CAACATACCC CGTGTAATCC CCTAAGTAGT 25240 .......... .......... .......... .......... .......... .......... 59 GTAATCCCAT GGGTGTTGTC TGGGAGGGTG ATGTTTACAC AACCTTATCA AAGCAAGTAT 25300 .......... .......... .......... .......... .......... .......... 59 ATAAGGGAAA TACAATAGCA AAAAAAGTCA TGCTGAAAAA CAATTAAGAA GAGAAAAAGT 25360 .......... .......... .......... .......... .......... .......... 59 GACAACAACA ATCAATATGA TAACTCAAGC AAAGGAAATA ACAATAATAC CACAATTGAA 25420 .......... .......... .......... .......... .......... .......... 59 AAATAAAATA GTAGGAAAGT AATAGGAACA ATACGGATAA GGAAATTAGA CAACGTTAGA 25480 .......... .......... .......... .......... .......... .......... 59 CCACCTACTT ACCTTCTGCC CTTAATCTCA TATCTTCCTA TCTAGAGACA TGTCATGTTC 25540 .......... .......... .......... .......... .......... .......... 59 TTTGTAAGCA GTAGAAGTGC CAAGCCTAAG TAGATGGATG AATTATGTTC TCTGTCATGG 25600 .......... .......... .......... .......... .......... .......... 59 CTGGAAATTG TTTAAGTAGA GAGTGAGTGT GAGTATCCAT ACCCGAACCT ATCCTGTTAT 25660 .......... .......... .......... .......... .......... .......... 59 ATTTGGATTG TTACTAGTTT TAGGACTTCA CCATAGCCTT CAACAATTAG AAGCTTAACT 25720 .......... .......... .......... .......... .......... .......... 59 TACTTTACCT TTAATCCTGC ACCTCGCGTT CATGATATCT ATTCAACCGT GCGTCAGAGA 25780 .......... .......... .......... .......... .......... .......... 59 CACGGTCGAA GCACGCCCGT CCAGTGTGCT TCTTTCACGA CATTCTGTAG TATAACTATC 25840 .......... .......... .......... .......... .......... .......... 59 AGCTTATACG TTGTGACTGT ATTGACTAAC CTGATGTTAT CTGTAAATGT TAGAAGTCAA 25900 .......... .......... .......... .......... .......... .......... 59 TTCTTTTTCA AGTTTCCACT TTCAATATCA ATGTCATCGG GGTAAAATCT CTCAACCATG 25960 .......... .......... .......... .......... .......... .......... 59 GTAGCATGCT CCCATTTCTT TCTTGGCATA GAACTTAAAA TTTCAACTTG TTCTAAACGC 26020 .......... .......... .......... .......... .......... .......... 59 GTAGCCATTT ATTTTTGAAA ATGAAACATA CTTAATAGAT TTTTTAACAA TATGCACAGA 26080 .......... .......... .......... .......... .......... .......... 59 AGGGTGCCAC AAACTCCAGC GCATCTGTAT GTATGTATGT ATGTATGTAT ACATATATCA 26140 .......... .......... .......... .......... .......... .......... 59 GGAAATATGG TGCACTGCTA CTTACTGAAA ATACAACAAG TTCTACTTAA TTTCATTTAT 26200 .......... .......... .......... .......... .......... .......... 59 TAAATAGAAG TGCTTTGAGA TAATCCTTAT CCTTCCTCTG ATGCAACTGC TTATTTTTAA 26260 .......... .......... .......... .......... .......... .......... 59 ACGTATCCTT TCTTTGGTGC AACTTCATGT ATTAAAAAAT ACTTTCATGT CTCAATTTTA 26320 .......... .......... .......... .......... .......... .......... 59 ATATTTTGGA CACAGCTGCA TATTATTCTA TAGATATTAT TATATTTATT GGTTTTTAGT 26380 .......... .......... .......... .......... .......... .......... 59 GAAAAGCAAC TTTTCTAGTG TACACTCCAT GTTGAAGCTT CCGATAAATC TATTCTGTCA 26440 .......... .......... .......... .......... .......... .......... 59 GAGTCTTCTT CTTCTTGGTG CTTTCCTGAT AACTAGTGTC AGAAGAATCT TATATTATTC 26500 .......... .......... .......... .......... .......... .......... 59 TTAGAGCCTG TTTGAATTGC TTAGTTGATG TGCTTCTAAG CGCTTTTGTT GTGTTTCAGT 26560 .......... .......... .......... .......... .......... .......... 59 AAAATAGTCC GTCAGTTAGA ATTCCTAAAT TGTGATTTTT GGCTTATAAG ACTAAGCCCA 26620 .......... .......... .......... .......... .......... .......... 59 AACAAACAGG CTCTTAGACT AATCATTAAA ATGATTTACA AATATTCAGC CGTTGTTAAA 26680 .......... .......... .......... .......... .......... .......... 59 ATGGCAGTTA GACTGCGTTT TGGTAATTAA TGACAAGTGA CAACTCAGTC ACTACTGAAT 26740 .......... .......... .......... .......... .......... .......... 59 TTGTTTTGGT AAGATACGTG AAAAAGCTTG AATGCAAATT TGATTAGTCT ACAATCCCCT 26800 .......... .......... .......... .......... .......... .......... 59 AATACCACTT CTCTAGTTGT ATCTGTAATT TTATATGGGC AAGTAATTTT TGAAGTATGC 26860 .......... .......... .......... .......... .......... .......... 59 TTTACTCTTC AAGTTTTGGT GTATATTGTG ATTTACATTC AGGATATTTT AATTTACACC 26920 .......... .......... .......... .......... .......... .......... 59 CAAAAAAATA ATTCTGCATG AAAGAAAAAA ATACTTCTCT AGTTGTATCT GTAATTTTAT 26980 .......... .......... .......... .......... .......... .......... 59 ATGGGTAAGT AATTTTTGAA GTATGCTTTA CTCTTCAAGT TTTGGTGTAT ATTGTGATTT 27040 .......... .......... .......... .......... .......... .......... 59 ACATTCAGGA TATTTTAATT TACACCCAAA AAAAGTAATT CTGCATGAAA GAAAAAAAAT 27100 .......... .......... .......... .......... .......... .......... 59 ACTTGTAGGA TAGTTTCTTC CAAGTTTGAG CTTTTGCTAA TATTATCATC TCTTAGAAGA 27160 .......... .......... .......... .......... .......... .......... 59 TATATTGCTG ATTTTTGTTT CTTGTTCAAG GTCGGACGAG GAAGTTGTTG ACCCAAAGGC 27220 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTCGGACGAG GAAGTTGTTG ACCCAAAGGC 89 GACATTAGAA GTAAGTTGCA AGCCTAAGTG TGTAAGGCAA CTAAAGGAGT ATCAGGTGAT 27280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GACATTAGAA GTAAGTTGCA AGCCTAAGTG TGTAAGGCAA CTAAAGGAGT ATCAG..... 144 TCCCAATGCA ATGAAATAGC CTTTCAGATA TTTCAAAAGC TTTTGGTTCT TATTTTAATT 27340 .......... .......... .......... .......... .......... .......... 144 ATTGGAACTA TTACTTATCT CCTTTATTTT GGGTAGTGTG TAAGGCAACT AAAGGGGTAT 27400 .......... .......... .......... .......... .......... .......... 144 CAGTTGATTC CCAATGCAAT GAAATAACCT TTCAGTTATT TCAAAAGCTT TTGGTTCTAA 27460 .......... .......... .......... .......... .......... .......... 144 TTTAATTATT GGAACTTTTA TCTCCTTTAT TTTGGGTGTT CAATACTTCC ACTGATTAAA 27520 .......... .......... .......... .......... .......... .......... 144 CCAATATCAG GATGAGCTAT GACATCGTTT ATGTTAGTGA AAGGCTATTT CTTTTTTTGT 27580 .......... .......... .......... .......... .......... .......... 144 AATTTTTAGC ATCATCATAC ACTGTTTCAT AGATGGGTAT AGCAGTTGAA TCTTCCTTTA 27640 .......... .......... .......... .......... .......... .......... 144 GTTTGAGAAT TCGAGACATT CTAGTGATAA GTGCCTTCAA ATGGAACACA ATGGTATGTT 27700 .......... .......... .......... .......... .......... .......... 144 TCTTACCAAT GCATCTGATC TTTTCCTACA GTTCAAAATT CAATGAAAAA AATTTGAAAA 27760 .......... .......... .......... .......... .......... .......... 144 TGAGAGATTT TCTGAAAAAT TAGTAAAAAG TAGAATGAAA GACAATCCTA TATTGACAAG 27820 .......... .......... .......... .......... .......... .......... 144 GACAAACTTT TTTACAATTT AGTAATGCCC ACACTCTTTC TTGTGTATCA AAGATCATCG 27880 .......... .......... .......... .......... .......... .......... 144 AAATAAGCAA CAAAACTATT TCAATAAAAA AATACTATTT ACAAGGATTT CAATCAAGAT 27940 .......... .......... .......... .......... .......... .......... 144 ACCTTAGCAA GATTCTAGTT CTTTCGTAAG TTCTTGTATT TAGTGTTGTG GGAATTTATC 28000 .......... .......... .......... .......... .......... .......... 144 TCGTCGTCTT TTTGGGGTTG CTTTTTTCAA TAAATACATT TCTTTACATA AGTTGTATTA 28060 .......... .......... .......... .......... .......... .......... 144 GTAATCTGGG TTTATGGATG ACTGCTCTTG GTATTGTTAG TCTAGCCTTA AACCATCGTT 28120 .......... .......... .......... .......... .......... .......... 144 TATATAGAGA CATCAACATA ATGTTTTAGC TTGGTGGAAA TGAATTCTTT TTCCTCAGGA 28180 .......... .......... .......... .......... .......... .......... 144 TCCTATTAGA TAGAAACAAA GAACAAAATA ACTAGAAAGG TTGTAAGAAT ACCCCTCTTC 28240 .......... .......... .......... .......... .......... .......... 144 TAGATGGATC GTCTACAAAG CTATTCGTTT AAAGTGTATT CAGATCAAAA GCTCGAATGG 28300 .......... .......... .......... .......... .......... .......... 144 CAAAAGAGGG AGGATTTGTG GCTTAGATCG TAGGTTCAAG CTCCACACCA TGCAAAAGGA 28360 .......... .......... .......... .......... .......... .......... 144 AGCCCCGTAT TTAAGTGGTG AAGGGTAGAG TAATGATCAT ATGTCTGTAG TGCATTGTAT 28420 .......... .......... .......... .......... .......... .......... 144 GTCCCATGAT AGGTCCCATT CTTCTTCTCT TCTCCAAACA AAGTCTATGA TTATTCATAT 28480 .......... .......... .......... .......... .......... .......... 144 CTATGTTACC TTGATATCAA AGAAGAGTTC AATCAATCCT ATGTTTCCAT TCCAACCTTC 28540 .......... .......... .......... .......... .......... .......... 144 CCATTTATCT GACTGTTGCT GAGCAGTTTA TGGATATCAC ACGGACAGCC CCAGATGGTA 28600 .......... .......... .......... .......... .......... .......... 144 AATTTTAATG TGGACAAATT TTCGTTGATC ATGCGACACT CGGATTTGAA CAGGGAGAAA 28660 .......... .......... .......... .......... .......... .......... 144 AGGATTTGCA GTCCTCGCAG CTCTGGGCTC GCTGTCGTAA GTGGGCCTGT TTATGTCAAC 28720 .......... .......... .......... .......... .......... .......... 144 TACCCTCTAG GTTTTTTAAG TAGAAGACAA CAAACTTATT AAATCTTTTT TTCTGCCTCA 28780 .......... .......... .......... .......... .......... .......... 144 ATTTTTTTTA ATCAGTTCTT AGTTCACTTT TCCCTTTTCC CTTAAAACCA TTTCTTCTGA 28840 .......... .......... .......... .......... .......... .......... 144 ACTAATTGAA ATACACATAA ATTTTTCCAA GTAAGAACCA CAAAACCATT ATTTTCCATA 28900 .......... .......... .......... .......... .......... .......... 144 AATCAGACCT AAAACAATCC TCCCTAAAAC ATTGAAAACA AAGTGTTTTC TTACAAAAAT 28960 .......... .......... .......... .......... .......... .......... 144 ACAAATCTGG AACTAAGTAA GTTAATACCT TTTCTATCTT TCATGAATCT AGTGTAGTTT 29020 .......... .......... .......... .......... .......... .......... 144 CATATTTTAT TTCTTCTGTA CTGTAATTAT GATCTTCACA AGAACTCAGA GTGGCACAAA 29080 .......... .......... .......... .......... .......... .......... 144 AATGTCTTGC ATTATGTTAT GTTATGTTAG ACCTGAAAAT TTTATATTTG GAAAATATCA 29140 .......... .......... .......... .......... .......... .......... 144 AATATTATGA ACATAATATG TACTGATTCC AGGACCTACT ACTCTAAGTA TGTACTGATT 29200 .......... .......... .......... .......... .......... .......... 144 CCAGGATCTA CTTCAAATCA ATTAAAATAG CAGGTCAAGA GAATTTTCTT TGCATGTTAC 29260 .......... .......... .......... .......... .......... .......... 144 TCTGATGGGA TGAACCAATA TAGGGACTTC ATCTGTGATT ATTTGGTCTC TCTAAGAAGC 29320 .......... .......... .......... .......... .......... .......... 144 CCCCCAAAAA AACATGTTTC TGGCCTCCAA ATACTTCTCG CTCTTTAGAT TAGGCACTCT 29380 .......... .......... .......... .......... .......... .......... 144 AGATTTCAGC TGGTTAGCGG TTGCTGGTAT TTGTATGATT TTTTGTTTCT TTGTTTTGTG 29440 .......... .......... .......... .......... .......... .......... 144 TGTAGCATGT TCTTAGATCC AAGAGGAATT GCAAGACATC AATCAGATTT TCTCTTCAAC 29500 .......... .......... .......... .......... .......... .......... 144 CTTGCCTTTT ATTCTGTTTG ATTGCTTTCT ATGGGGTCCT TTTGTTGTTT GTATCGCCAA 29560 .......... .......... .......... .......... .......... .......... 144 CAGTTTGCTG TAAGAGTTTT TGATGATGAG GAGTGTTACT TCAAGGTTTT CTTTCTCCAA 29620 .......... .......... .......... .......... .......... .......... 144 GACTCTGATT TCTAATATAA TTTTGATGCC ATTAAACGTT TTCCAATTTA TTTTTTATTT 29680 .......... .......... .......... .......... .......... .......... 144 TTCTACTTGT TCTTCATATA CTACCTCTGC AAACATCTTT GTAACCAACT TAATTATTTG 29740 .......... .......... .......... .......... .......... .......... 144 TGCAACGAAT GTGCTTTGGT TGGGGAGTCT GAGTTTCTAA CTTTTGGAAG GATTTTGGTC 29800 .......... .......... .......... .......... .......... .......... 144 TCTCTTTCTG CGAGAAGTGA AAGATTTTTT TTTTTGGAAG GATTCCAGAA CAATGATGTC 29860 .......... .......... .......... .......... .......... .......... 144 TCGTTTAGTT GTGCTAACTG TGCACCTCAT ATAACAATAC AGTAACATAT TTGATCTTCA 29920 .......... .......... .......... .......... .......... .......... 144 GAACAATTGC GCATGATCTG TTTTTTTTTT TAATTTTAAC TAATGGATGT GGAAGTATTG 29980 .......... .......... .......... .......... .......... .......... 144 CACCTTAGAA TGAAGGTGAT ATTCCTTCAC TAACCTCCCT GGGAAGTATA TATTACTTTC 30040 .......... .......... .......... .......... .......... .......... 144 ATCAAGATAT ACATGTATAT TTTGTGTTTT TGTTTTGTCC GGCAGAGGGG ACTTCATTTG 30100 .......... .......... .......... .......... .......... .......... 144 TGGATTAAGT TTGATGGATA TTTAGTCCAC GAGGTGTATC ATTTTCTATC TTGAAAAACA 30160 .......... .......... .......... .......... .......... .......... 144 CATTAAGTGT TAGTTAGGGT TGGTTATTTA TCGGGTGCAC ATCGTTCCCA CTGCTCTATG 30220 .......... .......... .......... .......... .......... .......... 144 ATGGTTAACT GTTGACCTGC TTTATTTATT GATCTGACAA TTCTTTTTGG CAAATGTCAC 30280 .......... .......... .......... .......... .......... .......... 144 ATTAATGTTT ATTAAACAGG ACAAGATTAC TTGCACTTTG TCATTAGTTG CAGTCCCAAA 30340 .......... .......... .......... .......... .......... .......... 144 AACTTTTAAC TTGCAATATT TGATTATTTT CATCTTTCTG TTTGTCATAT CCCCCTTCTT 30400 .......... .......... .......... .......... .......... .......... 144 TCCCTTTTTC CTGTCTTTTG GCGGGGTGGG GGTGGATAAT GAATTTCTGA AGAAGGCCAG 30460 .......... .......... .......... .......... .......... .......... 144 CTTTGTTGCT TCAAAATTAG TAGTGGTTTT CTTACTTTAT GGGTCTCATT CTGCATCCTA 30520 .......... .......... .......... .......... .......... .......... 144 CAGGCATGTA CTAAAAGGAT AGAAGGTGAT GAATCAGGGC ACAAACATTG CACTGGACAG 30580 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCATGTA CTAAAAGGAT AGAAGGTGAT GAATCAGGGC ACAAACATTG CACTGGACAG 201 TATTTTGATT ATTGGCACTG CATCGACAAA TGTGTAAGCT CCCTTTTCCG GTTGTTTGGC 30640 |||||||||| |||||||||| |||||||||| ||| TATTTTGATT ATTGGCACTG CATCGACAAA TGT....... .......... .......... 234 ATTTTTGTGT TGGGGTTTTC AGGGTGTGCT GCCTCTTGAT TCTTTTCTCC GTTGTTGTCG 30700 .......... .......... .......... .......... .......... .......... 234 TTTGTTGTTT TCTTACCTTT TCGTGGAACT GTTTGCACAG GTTGCTGCGA AGTTGTTTGA 30760 |||||||||| |||||||||| .......... .......... .......... .......... GTTGCTGCGA AGTTGTTTGA 254 CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC AATTTATCTT CTTTTTGGTT 30820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC AATTTATCTT CTTTTTGGTT 314 GTTGAACAAG TCATTACCAT ATTATTCCTC ACTGTGCTGA AGACTTGTAA CCCTTTCAAT 30880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAACAAG TCATTACCAT ATTATTCCTC ACTGTGCTGA AGACTTGTAA CCCTTTCAAT 374 CAACTTGGTT GCTGCATGGA AAATTTTGAA CTATGCACAT CTTAAAAAGT GATTAATAAA 30940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTTGGTT GCTGCATGGA AAATTTTGAA CTATGCACAT CTTAAAAAGT GATTAATAAA 434 TCATAC 30946 |||||| TCATAC 440 hqPGS_C09HBa0099P03.1-2+_SGN-E334870+ (24401 24412,24590 24636,27191 27275,30524 30613,30741 30946) ******************************************************************************** EST sequence 61 +strand 451 n (File: SGN-E283872+) 1 TGCAGAATCG AAGTCTTCGT CTTGAATATC TCTTTGCCAT GTCGGACGAG GAAGTTGTTG 61 ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG TGTAAGGCAA CTAAAGGAGT 121 ATCAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCATG GCACAAACAT TGCACTGGAC 181 AGTATTTTGA TTATTGGCAC TGCATCTACA AATGTGTTGC TGCGAAGTTG TTTGACCATC 241 TCAGGTCACA AGGATATAAG TTGTTGATCC CTTGCAATTT ATCTTCTTTT TGGTTGCTGA 301 ACAAGTCATT ACCATATTAT TCCTCACTGT GCTGAAGACT TGTAACCCTT TCAATCAACT 361 TGGTTGCTGC ATGGAAAATT TTGAACTATG CACATCTTAA AGAGTGATTA ATAAATCATA 421 CTCGCGGGTT GAATTGGACC CTTTTATTCG T Predicted gene structure (within gDNA segment 23997 to 31586): Exon 1 24597 24636 ( 40 n); cDNA 1 40 ( 40 n); score: 0.975 Intron 1 24637 27190 (2554 n); Pd: 0.987 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 27191 27275 ( 85 n); cDNA 41 125 ( 85 n); score: 1.000 Intron 2 27276 30523 (3248 n); Pd: 0.656 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 3 30524 30613 ( 90 n); cDNA 126 215 ( 90 n); score: 0.978 Intron 3 30614 30740 ( 127 n); Pd: 0.940 (s: 0.98), Pa: 0.995 (s: 0.96) Exon 4 30741 30976 ( 236 n); cDNA 216 451 ( 236 n); score: 0.979 MATCH C09HBa0099P03.1-2+ SGN-E283872+ 0.983 451 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E283872+ (24597 24636,27191 27275,30524 30613,30741 30976) Alignment (genomic DNA sequence = upper lines): TGCAGAATCG AAGTCTTCGT CTCGAATATC TCTTTGCCAT GTGAGTAACT GTTGATCTAT 24656 |||||||||| |||||||||| || ||||||| |||||||||| TGCAGAATCG AAGTCTTCGT CTTGAATATC TCTTTGCCAT .......... .......... 40 TGATAATGAA TCTATTCCCT CTTCATTAGT AATTTGATTT TAGTTTTACT TTTGATGTGA 24716 .......... .......... .......... .......... .......... .......... 40 TTTATTTGTC TCATTTAGTT TGTAAAATCG ATTCACTCTA CTAGTAAGTT ACAAATAGTA 24776 .......... .......... .......... .......... .......... .......... 40 TGTAACTTGT GTTCTCCATA CCATATGTCT TAAATAGTTT TTTCGATTCT AAACTGTGGG 24836 .......... .......... .......... .......... .......... .......... 40 TGTGCGGGTT TTAGGTTGTT AAAAATTGAG ATTGCAATAA AAATAATGCA GAAGACTTTG 24896 .......... .......... .......... .......... .......... .......... 40 ATCTGGGGCA ATTAAAAAGA TAACAAACTC GTCATCATTA GTTCATCTTT ATTTTTCTAA 24956 .......... .......... .......... .......... .......... .......... 40 AGAGCGAAGT GCTTGACTTA ACCAACTTGT GGTTTGTTCT TGATTGGAAC TATAAGTTGA 25016 .......... .......... .......... .......... .......... .......... 40 GAGAAGTGAA GTTTTTCGGA AATTTAATAA TATTATAAAA TTTTGTGATT TTTTCCCATT 25076 .......... .......... .......... .......... .......... .......... 40 GTTTATATAA TATAGCAAAA TCAACAGTTT GATTGTACTG ATTCGTTGTT AGTTTTCCAA 25136 .......... .......... .......... .......... .......... .......... 40 TGTGCAAATA CTTACCAGGT TAATACATTT ATTTAAGGCT TTACTAGTGA TCTAATATTC 25196 .......... .......... .......... .......... .......... .......... 40 CTAAGTAAGA AAAACAACAT ACCCCGTGTA ATCCCCTAAG TAGTGTAATC CCATGGGTGT 25256 .......... .......... .......... .......... .......... .......... 40 TGTCTGGGAG GGTGATGTTT ACACAACCTT ATCAAAGCAA GTATATAAGG GAAATACAAT 25316 .......... .......... .......... .......... .......... .......... 40 AGCAAAAAAA GTCATGCTGA AAAACAATTA AGAAGAGAAA AAGTGACAAC AACAATCAAT 25376 .......... .......... .......... .......... .......... .......... 40 ATGATAACTC AAGCAAAGGA AATAACAATA ATACCACAAT TGAAAAATAA AATAGTAGGA 25436 .......... .......... .......... .......... .......... .......... 40 AAGTAATAGG AACAATACGG ATAAGGAAAT TAGACAACGT TAGACCACCT ACTTACCTTC 25496 .......... .......... .......... .......... .......... .......... 40 TGCCCTTAAT CTCATATCTT CCTATCTAGA GACATGTCAT GTTCTTTGTA AGCAGTAGAA 25556 .......... .......... .......... .......... .......... .......... 40 GTGCCAAGCC TAAGTAGATG GATGAATTAT GTTCTCTGTC ATGGCTGGAA ATTGTTTAAG 25616 .......... .......... .......... .......... .......... .......... 40 TAGAGAGTGA GTGTGAGTAT CCATACCCGA ACCTATCCTG TTATATTTGG ATTGTTACTA 25676 .......... .......... .......... .......... .......... .......... 40 GTTTTAGGAC TTCACCATAG CCTTCAACAA TTAGAAGCTT AACTTACTTT ACCTTTAATC 25736 .......... .......... .......... .......... .......... .......... 40 CTGCACCTCG CGTTCATGAT ATCTATTCAA CCGTGCGTCA GAGACACGGT CGAAGCACGC 25796 .......... .......... .......... .......... .......... .......... 40 CCGTCCAGTG TGCTTCTTTC ACGACATTCT GTAGTATAAC TATCAGCTTA TACGTTGTGA 25856 .......... .......... .......... .......... .......... .......... 40 CTGTATTGAC TAACCTGATG TTATCTGTAA ATGTTAGAAG TCAATTCTTT TTCAAGTTTC 25916 .......... .......... .......... .......... .......... .......... 40 CACTTTCAAT ATCAATGTCA TCGGGGTAAA ATCTCTCAAC CATGGTAGCA TGCTCCCATT 25976 .......... .......... .......... .......... .......... .......... 40 TCTTTCTTGG CATAGAACTT AAAATTTCAA CTTGTTCTAA ACGCGTAGCC ATTTATTTTT 26036 .......... .......... .......... .......... .......... .......... 40 GAAAATGAAA CATACTTAAT AGATTTTTTA ACAATATGCA CAGAAGGGTG CCACAAACTC 26096 .......... .......... .......... .......... .......... .......... 40 CAGCGCATCT GTATGTATGT ATGTATGTAT GTATACATAT ATCAGGAAAT ATGGTGCACT 26156 .......... .......... .......... .......... .......... .......... 40 GCTACTTACT GAAAATACAA CAAGTTCTAC TTAATTTCAT TTATTAAATA GAAGTGCTTT 26216 .......... .......... .......... .......... .......... .......... 40 GAGATAATCC TTATCCTTCC TCTGATGCAA CTGCTTATTT TTAAACGTAT CCTTTCTTTG 26276 .......... .......... .......... .......... .......... .......... 40 GTGCAACTTC ATGTATTAAA AAATACTTTC ATGTCTCAAT TTTAATATTT TGGACACAGC 26336 .......... .......... .......... .......... .......... .......... 40 TGCATATTAT TCTATAGATA TTATTATATT TATTGGTTTT TAGTGAAAAG CAACTTTTCT 26396 .......... .......... .......... .......... .......... .......... 40 AGTGTACACT CCATGTTGAA GCTTCCGATA AATCTATTCT GTCAGAGTCT TCTTCTTCTT 26456 .......... .......... .......... .......... .......... .......... 40 GGTGCTTTCC TGATAACTAG TGTCAGAAGA ATCTTATATT ATTCTTAGAG CCTGTTTGAA 26516 .......... .......... .......... .......... .......... .......... 40 TTGCTTAGTT GATGTGCTTC TAAGCGCTTT TGTTGTGTTT CAGTAAAATA GTCCGTCAGT 26576 .......... .......... .......... .......... .......... .......... 40 TAGAATTCCT AAATTGTGAT TTTTGGCTTA TAAGACTAAG CCCAAACAAA CAGGCTCTTA 26636 .......... .......... .......... .......... .......... .......... 40 GACTAATCAT TAAAATGATT TACAAATATT CAGCCGTTGT TAAAATGGCA GTTAGACTGC 26696 .......... .......... .......... .......... .......... .......... 40 GTTTTGGTAA TTAATGACAA GTGACAACTC AGTCACTACT GAATTTGTTT TGGTAAGATA 26756 .......... .......... .......... .......... .......... .......... 40 CGTGAAAAAG CTTGAATGCA AATTTGATTA GTCTACAATC CCCTAATACC ACTTCTCTAG 26816 .......... .......... .......... .......... .......... .......... 40 TTGTATCTGT AATTTTATAT GGGCAAGTAA TTTTTGAAGT ATGCTTTACT CTTCAAGTTT 26876 .......... .......... .......... .......... .......... .......... 40 TGGTGTATAT TGTGATTTAC ATTCAGGATA TTTTAATTTA CACCCAAAAA AATAATTCTG 26936 .......... .......... .......... .......... .......... .......... 40 CATGAAAGAA AAAAATACTT CTCTAGTTGT ATCTGTAATT TTATATGGGT AAGTAATTTT 26996 .......... .......... .......... .......... .......... .......... 40 TGAAGTATGC TTTACTCTTC AAGTTTTGGT GTATATTGTG ATTTACATTC AGGATATTTT 27056 .......... .......... .......... .......... .......... .......... 40 AATTTACACC CAAAAAAAGT AATTCTGCAT GAAAGAAAAA AAATACTTGT AGGATAGTTT 27116 .......... .......... .......... .......... .......... .......... 40 CTTCCAAGTT TGAGCTTTTG CTAATATTAT CATCTCTTAG AAGATATATT GCTGATTTTT 27176 .......... .......... .......... .......... .......... .......... 40 GTTTCTTGTT CAAGGTCGGA CGAGGAAGTT GTTGACCCAA AGGCGACATT AGAAGTAAGT 27236 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTCGGA CGAGGAAGTT GTTGACCCAA AGGCGACATT AGAAGTAAGT 86 TGCAAGCCTA AGTGTGTAAG GCAACTAAAG GAGTATCAGG TGATTCCCAA TGCAATGAAA 27296 |||||||||| |||||||||| |||||||||| ||||||||| TGCAAGCCTA AGTGTGTAAG GCAACTAAAG GAGTATCAG. .......... .......... 125 TAGCCTTTCA GATATTTCAA AAGCTTTTGG TTCTTATTTT AATTATTGGA ACTATTACTT 27356 .......... .......... .......... .......... .......... .......... 125 ATCTCCTTTA TTTTGGGTAG TGTGTAAGGC AACTAAAGGG GTATCAGTTG ATTCCCAATG 27416 .......... .......... .......... .......... .......... .......... 125 CAATGAAATA ACCTTTCAGT TATTTCAAAA GCTTTTGGTT CTAATTTAAT TATTGGAACT 27476 .......... .......... .......... .......... .......... .......... 125 TTTATCTCCT TTATTTTGGG TGTTCAATAC TTCCACTGAT TAAACCAATA TCAGGATGAG 27536 .......... .......... .......... .......... .......... .......... 125 CTATGACATC GTTTATGTTA GTGAAAGGCT ATTTCTTTTT TTGTAATTTT TAGCATCATC 27596 .......... .......... .......... .......... .......... .......... 125 ATACACTGTT TCATAGATGG GTATAGCAGT TGAATCTTCC TTTAGTTTGA GAATTCGAGA 27656 .......... .......... .......... .......... .......... .......... 125 CATTCTAGTG ATAAGTGCCT TCAAATGGAA CACAATGGTA TGTTTCTTAC CAATGCATCT 27716 .......... .......... .......... .......... .......... .......... 125 GATCTTTTCC TACAGTTCAA AATTCAATGA AAAAAATTTG AAAATGAGAG ATTTTCTGAA 27776 .......... .......... .......... .......... .......... .......... 125 AAATTAGTAA AAAGTAGAAT GAAAGACAAT CCTATATTGA CAAGGACAAA CTTTTTTACA 27836 .......... .......... .......... .......... .......... .......... 125 ATTTAGTAAT GCCCACACTC TTTCTTGTGT ATCAAAGATC ATCGAAATAA GCAACAAAAC 27896 .......... .......... .......... .......... .......... .......... 125 TATTTCAATA AAAAAATACT ATTTACAAGG ATTTCAATCA AGATACCTTA GCAAGATTCT 27956 .......... .......... .......... .......... .......... .......... 125 AGTTCTTTCG TAAGTTCTTG TATTTAGTGT TGTGGGAATT TATCTCGTCG TCTTTTTGGG 28016 .......... .......... .......... .......... .......... .......... 125 GTTGCTTTTT TCAATAAATA CATTTCTTTA CATAAGTTGT ATTAGTAATC TGGGTTTATG 28076 .......... .......... .......... .......... .......... .......... 125 GATGACTGCT CTTGGTATTG TTAGTCTAGC CTTAAACCAT CGTTTATATA GAGACATCAA 28136 .......... .......... .......... .......... .......... .......... 125 CATAATGTTT TAGCTTGGTG GAAATGAATT CTTTTTCCTC AGGATCCTAT TAGATAGAAA 28196 .......... .......... .......... .......... .......... .......... 125 CAAAGAACAA AATAACTAGA AAGGTTGTAA GAATACCCCT CTTCTAGATG GATCGTCTAC 28256 .......... .......... .......... .......... .......... .......... 125 AAAGCTATTC GTTTAAAGTG TATTCAGATC AAAAGCTCGA ATGGCAAAAG AGGGAGGATT 28316 .......... .......... .......... .......... .......... .......... 125 TGTGGCTTAG ATCGTAGGTT CAAGCTCCAC ACCATGCAAA AGGAAGCCCC GTATTTAAGT 28376 .......... .......... .......... .......... .......... .......... 125 GGTGAAGGGT AGAGTAATGA TCATATGTCT GTAGTGCATT GTATGTCCCA TGATAGGTCC 28436 .......... .......... .......... .......... .......... .......... 125 CATTCTTCTT CTCTTCTCCA AACAAAGTCT ATGATTATTC ATATCTATGT TACCTTGATA 28496 .......... .......... .......... .......... .......... .......... 125 TCAAAGAAGA GTTCAATCAA TCCTATGTTT CCATTCCAAC CTTCCCATTT ATCTGACTGT 28556 .......... .......... .......... .......... .......... .......... 125 TGCTGAGCAG TTTATGGATA TCACACGGAC AGCCCCAGAT GGTAAATTTT AATGTGGACA 28616 .......... .......... .......... .......... .......... .......... 125 AATTTTCGTT GATCATGCGA CACTCGGATT TGAACAGGGA GAAAAGGATT TGCAGTCCTC 28676 .......... .......... .......... .......... .......... .......... 125 GCAGCTCTGG GCTCGCTGTC GTAAGTGGGC CTGTTTATGT CAACTACCCT CTAGGTTTTT 28736 .......... .......... .......... .......... .......... .......... 125 TAAGTAGAAG ACAACAAACT TATTAAATCT TTTTTTCTGC CTCAATTTTT TTTAATCAGT 28796 .......... .......... .......... .......... .......... .......... 125 TCTTAGTTCA CTTTTCCCTT TTCCCTTAAA ACCATTTCTT CTGAACTAAT TGAAATACAC 28856 .......... .......... .......... .......... .......... .......... 125 ATAAATTTTT CCAAGTAAGA ACCACAAAAC CATTATTTTC CATAAATCAG ACCTAAAACA 28916 .......... .......... .......... .......... .......... .......... 125 ATCCTCCCTA AAACATTGAA AACAAAGTGT TTTCTTACAA AAATACAAAT CTGGAACTAA 28976 .......... .......... .......... .......... .......... .......... 125 GTAAGTTAAT ACCTTTTCTA TCTTTCATGA ATCTAGTGTA GTTTCATATT TTATTTCTTC 29036 .......... .......... .......... .......... .......... .......... 125 TGTACTGTAA TTATGATCTT CACAAGAACT CAGAGTGGCA CAAAAATGTC TTGCATTATG 29096 .......... .......... .......... .......... .......... .......... 125 TTATGTTATG TTAGACCTGA AAATTTTATA TTTGGAAAAT ATCAAATATT ATGAACATAA 29156 .......... .......... .......... .......... .......... .......... 125 TATGTACTGA TTCCAGGACC TACTACTCTA AGTATGTACT GATTCCAGGA TCTACTTCAA 29216 .......... .......... .......... .......... .......... .......... 125 ATCAATTAAA ATAGCAGGTC AAGAGAATTT TCTTTGCATG TTACTCTGAT GGGATGAACC 29276 .......... .......... .......... .......... .......... .......... 125 AATATAGGGA CTTCATCTGT GATTATTTGG TCTCTCTAAG AAGCCCCCCA AAAAAACATG 29336 .......... .......... .......... .......... .......... .......... 125 TTTCTGGCCT CCAAATACTT CTCGCTCTTT AGATTAGGCA CTCTAGATTT CAGCTGGTTA 29396 .......... .......... .......... .......... .......... .......... 125 GCGGTTGCTG GTATTTGTAT GATTTTTTGT TTCTTTGTTT TGTGTGTAGC ATGTTCTTAG 29456 .......... .......... .......... .......... .......... .......... 125 ATCCAAGAGG AATTGCAAGA CATCAATCAG ATTTTCTCTT CAACCTTGCC TTTTATTCTG 29516 .......... .......... .......... .......... .......... .......... 125 TTTGATTGCT TTCTATGGGG TCCTTTTGTT GTTTGTATCG CCAACAGTTT GCTGTAAGAG 29576 .......... .......... .......... .......... .......... .......... 125 TTTTTGATGA TGAGGAGTGT TACTTCAAGG TTTTCTTTCT CCAAGACTCT GATTTCTAAT 29636 .......... .......... .......... .......... .......... .......... 125 ATAATTTTGA TGCCATTAAA CGTTTTCCAA TTTATTTTTT ATTTTTCTAC TTGTTCTTCA 29696 .......... .......... .......... .......... .......... .......... 125 TATACTACCT CTGCAAACAT CTTTGTAACC AACTTAATTA TTTGTGCAAC GAATGTGCTT 29756 .......... .......... .......... .......... .......... .......... 125 TGGTTGGGGA GTCTGAGTTT CTAACTTTTG GAAGGATTTT GGTCTCTCTT TCTGCGAGAA 29816 .......... .......... .......... .......... .......... .......... 125 GTGAAAGATT TTTTTTTTTG GAAGGATTCC AGAACAATGA TGTCTCGTTT AGTTGTGCTA 29876 .......... .......... .......... .......... .......... .......... 125 ACTGTGCACC TCATATAACA ATACAGTAAC ATATTTGATC TTCAGAACAA TTGCGCATGA 29936 .......... .......... .......... .......... .......... .......... 125 TCTGTTTTTT TTTTTAATTT TAACTAATGG ATGTGGAAGT ATTGCACCTT AGAATGAAGG 29996 .......... .......... .......... .......... .......... .......... 125 TGATATTCCT TCACTAACCT CCCTGGGAAG TATATATTAC TTTCATCAAG ATATACATGT 30056 .......... .......... .......... .......... .......... .......... 125 ATATTTTGTG TTTTTGTTTT GTCCGGCAGA GGGGACTTCA TTTGTGGATT AAGTTTGATG 30116 .......... .......... .......... .......... .......... .......... 125 GATATTTAGT CCACGAGGTG TATCATTTTC TATCTTGAAA AACACATTAA GTGTTAGTTA 30176 .......... .......... .......... .......... .......... .......... 125 GGGTTGGTTA TTTATCGGGT GCACATCGTT CCCACTGCTC TATGATGGTT AACTGTTGAC 30236 .......... .......... .......... .......... .......... .......... 125 CTGCTTTATT TATTGATCTG ACAATTCTTT TTGGCAAATG TCACATTAAT GTTTATTAAA 30296 .......... .......... .......... .......... .......... .......... 125 CAGGACAAGA TTACTTGCAC TTTGTCATTA GTTGCAGTCC CAAAAACTTT TAACTTGCAA 30356 .......... .......... .......... .......... .......... .......... 125 TATTTGATTA TTTTCATCTT TCTGTTTGTC ATATCCCCCT TCTTTCCCTT TTTCCTGTCT 30416 .......... .......... .......... .......... .......... .......... 125 TTTGGCGGGG TGGGGGTGGA TAATGAATTT CTGAAGAAGG CCAGCTTTGT TGCTTCAAAA 30476 .......... .......... .......... .......... .......... .......... 125 TTAGTAGTGG TTTTCTTACT TTATGGGTCT CATTCTGCAT CCTACAGGCA TGTACTAAAA 30536 ||| |||||||||| .......... .......... .......... .......... .......GCA TGTACTAAAA 138 GGATAGAAGG TGATGAATCA GGGCACAAAC ATTGCACTGG ACAGTATTTT GATTATTGGC 30596 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGATAGAAGG TGATGAATCA TGGCACAAAC ATTGCACTGG ACAGTATTTT GATTATTGGC 198 ACTGCATCGA CAAATGTGTA AGCTCCCTTT TCCGGTTGTT TGGCATTTTT GTGTTGGGGT 30656 |||||||| | ||||||| ACTGCATCTA CAAATGT... .......... .......... .......... .......... 215 TTTCAGGGTG TGCTGCCTCT TGATTCTTTT CTCCGTTGTT GTCGTTTGTT GTTTTCTTAC 30716 .......... .......... .......... .......... .......... .......... 215 CTTTTCGTGG AACTGTTTGC ACAGGTTGCT GCGAAGTTGT TTGACCATCT CAAGTAACAA 30776 |||||| |||||||||| |||||||||| || || |||| .......... .......... ....GTTGCT GCGAAGTTGT TTGACCATCT CAGGTCACAA 251 GGATATAAGT TGTTGATCCC TTGCAATTTA TCTTCTTTTT GGTTGTTGAA CAAGTCATTA 30836 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| GGATATAAGT TGTTGATCCC TTGCAATTTA TCTTCTTTTT GGTTGCTGAA CAAGTCATTA 311 CCATATTATT CCTCACTGTG CTGAAGACTT GTAACCCTTT CAATCAACTT GGTTGCTGCA 30896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATATTATT CCTCACTGTG CTGAAGACTT GTAACCCTTT CAATCAACTT GGTTGCTGCA 371 TGGAAAATTT TGAACTATGC ACATCTTAAA AAGTGATTAA TAAATCATAC TCGTGGGTTG 30956 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||| |||||| TGGAAAATTT TGAACTATGC ACATCTTAAA GAGTGATTAA TAAATCATAC TCGCGGGTTG 431 AATTGGACCC TTTTATTCGT 30976 |||||||||| |||||||||| AATTGGACCC TTTTATTCGT 451 hqPGS_C09HBa0099P03.1-2+_SGN-E283872+ (24597 24636,27191 27275,30524 30613,30741 30976) ******************************************************************************** EST sequence 46 +strand 402 n (File: SGN-E288157+) 1 TCGTATCCAA TATCTCGTTG GATGTCGGAC GAGGAAGTTG TTGACCCAAA GGCGACAATG 61 GAAGTATCTT GCAAGCCTAA GTGTGTAAGG CAACTAAAGG ATTATCAGGC ATGTACTAGA 121 AGGATAGAAG GTGATGAATC AGGGAGCAAG CATTGCACTG GACAGTATTT TGATTATTGG 181 CAATGCATTG ACAAATGTGT TGCCCCAAAG CTATTTGAAA AACTCAAGTA ACATGGAGAT 241 AAGTGTTCAT CCATTACGAT TTTATCTTGC TTTTTCATTG CTGAAGCCTG TGCTACAGAC 301 TTGCAATCCC TTCAATCAAC TTAGTTGCCG CATGGAAAAT TTTGTACTAT GCACATTATT 361 AAGAAGTGAT TAATAAAGGA TACTTATGGG TTAAAAAAAA AA Predicted gene structure (within gDNA segment 26361 to 33407): Exon 1 27191 27275 ( 85 n); cDNA 24 108 ( 85 n); score: 0.941 Intron 1 27276 30523 (3248 n); Pd: 0.656 (s: 0.92), Pa: 0.996 (s: 0.92) Exon 2 30524 30613 ( 90 n); cDNA 109 198 ( 90 n); score: 0.933 Intron 2 30614 30740 ( 127 n); Pd: 0.940 (s: 0.94), Pa: 0.995 (s: 0.78) Exon 3 30741 30826 ( 86 n); cDNA 199 285 ( 87 n); score: 0.733 PPA cDNA 393 402 MATCH C09HBa0099P03.1-2+ SGN-E288157+ 0.870 261 0.649 C PGS_C09HBa0099P03.1-2+_SGN-E288157+ (27191 27275,30524 30613,30741 30826) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 27250 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 83 TGTAAGGCAA CTAAAGGAGT ATCAGGTGAT TCCCAATGCA ATGAAATAGC CTTTCAGATA 27310 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGATT ATCAG..... .......... .......... .......... 108 TTTCAAAAGC TTTTGGTTCT TATTTTAATT ATTGGAACTA TTACTTATCT CCTTTATTTT 27370 .......... .......... .......... .......... .......... .......... 108 GGGTAGTGTG TAAGGCAACT AAAGGGGTAT CAGTTGATTC CCAATGCAAT GAAATAACCT 27430 .......... .......... .......... .......... .......... .......... 108 TTCAGTTATT TCAAAAGCTT TTGGTTCTAA TTTAATTATT GGAACTTTTA TCTCCTTTAT 27490 .......... .......... .......... .......... .......... .......... 108 TTTGGGTGTT CAATACTTCC ACTGATTAAA CCAATATCAG GATGAGCTAT GACATCGTTT 27550 .......... .......... .......... .......... .......... .......... 108 ATGTTAGTGA AAGGCTATTT CTTTTTTTGT AATTTTTAGC ATCATCATAC ACTGTTTCAT 27610 .......... .......... .......... .......... .......... .......... 108 AGATGGGTAT AGCAGTTGAA TCTTCCTTTA GTTTGAGAAT TCGAGACATT CTAGTGATAA 27670 .......... .......... .......... .......... .......... .......... 108 GTGCCTTCAA ATGGAACACA ATGGTATGTT TCTTACCAAT GCATCTGATC TTTTCCTACA 27730 .......... .......... .......... .......... .......... .......... 108 GTTCAAAATT CAATGAAAAA AATTTGAAAA TGAGAGATTT TCTGAAAAAT TAGTAAAAAG 27790 .......... .......... .......... .......... .......... .......... 108 TAGAATGAAA GACAATCCTA TATTGACAAG GACAAACTTT TTTACAATTT AGTAATGCCC 27850 .......... .......... .......... .......... .......... .......... 108 ACACTCTTTC TTGTGTATCA AAGATCATCG AAATAAGCAA CAAAACTATT TCAATAAAAA 27910 .......... .......... .......... .......... .......... .......... 108 AATACTATTT ACAAGGATTT CAATCAAGAT ACCTTAGCAA GATTCTAGTT CTTTCGTAAG 27970 .......... .......... .......... .......... .......... .......... 108 TTCTTGTATT TAGTGTTGTG GGAATTTATC TCGTCGTCTT TTTGGGGTTG CTTTTTTCAA 28030 .......... .......... .......... .......... .......... .......... 108 TAAATACATT TCTTTACATA AGTTGTATTA GTAATCTGGG TTTATGGATG ACTGCTCTTG 28090 .......... .......... .......... .......... .......... .......... 108 GTATTGTTAG TCTAGCCTTA AACCATCGTT TATATAGAGA CATCAACATA ATGTTTTAGC 28150 .......... .......... .......... .......... .......... .......... 108 TTGGTGGAAA TGAATTCTTT TTCCTCAGGA TCCTATTAGA TAGAAACAAA GAACAAAATA 28210 .......... .......... .......... .......... .......... .......... 108 ACTAGAAAGG TTGTAAGAAT ACCCCTCTTC TAGATGGATC GTCTACAAAG CTATTCGTTT 28270 .......... .......... .......... .......... .......... .......... 108 AAAGTGTATT CAGATCAAAA GCTCGAATGG CAAAAGAGGG AGGATTTGTG GCTTAGATCG 28330 .......... .......... .......... .......... .......... .......... 108 TAGGTTCAAG CTCCACACCA TGCAAAAGGA AGCCCCGTAT TTAAGTGGTG AAGGGTAGAG 28390 .......... .......... .......... .......... .......... .......... 108 TAATGATCAT ATGTCTGTAG TGCATTGTAT GTCCCATGAT AGGTCCCATT CTTCTTCTCT 28450 .......... .......... .......... .......... .......... .......... 108 TCTCCAAACA AAGTCTATGA TTATTCATAT CTATGTTACC TTGATATCAA AGAAGAGTTC 28510 .......... .......... .......... .......... .......... .......... 108 AATCAATCCT ATGTTTCCAT TCCAACCTTC CCATTTATCT GACTGTTGCT GAGCAGTTTA 28570 .......... .......... .......... .......... .......... .......... 108 TGGATATCAC ACGGACAGCC CCAGATGGTA AATTTTAATG TGGACAAATT TTCGTTGATC 28630 .......... .......... .......... .......... .......... .......... 108 ATGCGACACT CGGATTTGAA CAGGGAGAAA AGGATTTGCA GTCCTCGCAG CTCTGGGCTC 28690 .......... .......... .......... .......... .......... .......... 108 GCTGTCGTAA GTGGGCCTGT TTATGTCAAC TACCCTCTAG GTTTTTTAAG TAGAAGACAA 28750 .......... .......... .......... .......... .......... .......... 108 CAAACTTATT AAATCTTTTT TTCTGCCTCA ATTTTTTTTA ATCAGTTCTT AGTTCACTTT 28810 .......... .......... .......... .......... .......... .......... 108 TCCCTTTTCC CTTAAAACCA TTTCTTCTGA ACTAATTGAA ATACACATAA ATTTTTCCAA 28870 .......... .......... .......... .......... .......... .......... 108 GTAAGAACCA CAAAACCATT ATTTTCCATA AATCAGACCT AAAACAATCC TCCCTAAAAC 28930 .......... .......... .......... .......... .......... .......... 108 ATTGAAAACA AAGTGTTTTC TTACAAAAAT ACAAATCTGG AACTAAGTAA GTTAATACCT 28990 .......... .......... .......... .......... .......... .......... 108 TTTCTATCTT TCATGAATCT AGTGTAGTTT CATATTTTAT TTCTTCTGTA CTGTAATTAT 29050 .......... .......... .......... .......... .......... .......... 108 GATCTTCACA AGAACTCAGA GTGGCACAAA AATGTCTTGC ATTATGTTAT GTTATGTTAG 29110 .......... .......... .......... .......... .......... .......... 108 ACCTGAAAAT TTTATATTTG GAAAATATCA AATATTATGA ACATAATATG TACTGATTCC 29170 .......... .......... .......... .......... .......... .......... 108 AGGACCTACT ACTCTAAGTA TGTACTGATT CCAGGATCTA CTTCAAATCA ATTAAAATAG 29230 .......... .......... .......... .......... .......... .......... 108 CAGGTCAAGA GAATTTTCTT TGCATGTTAC TCTGATGGGA TGAACCAATA TAGGGACTTC 29290 .......... .......... .......... .......... .......... .......... 108 ATCTGTGATT ATTTGGTCTC TCTAAGAAGC CCCCCAAAAA AACATGTTTC TGGCCTCCAA 29350 .......... .......... .......... .......... .......... .......... 108 ATACTTCTCG CTCTTTAGAT TAGGCACTCT AGATTTCAGC TGGTTAGCGG TTGCTGGTAT 29410 .......... .......... .......... .......... .......... .......... 108 TTGTATGATT TTTTGTTTCT TTGTTTTGTG TGTAGCATGT TCTTAGATCC AAGAGGAATT 29470 .......... .......... .......... .......... .......... .......... 108 GCAAGACATC AATCAGATTT TCTCTTCAAC CTTGCCTTTT ATTCTGTTTG ATTGCTTTCT 29530 .......... .......... .......... .......... .......... .......... 108 ATGGGGTCCT TTTGTTGTTT GTATCGCCAA CAGTTTGCTG TAAGAGTTTT TGATGATGAG 29590 .......... .......... .......... .......... .......... .......... 108 GAGTGTTACT TCAAGGTTTT CTTTCTCCAA GACTCTGATT TCTAATATAA TTTTGATGCC 29650 .......... .......... .......... .......... .......... .......... 108 ATTAAACGTT TTCCAATTTA TTTTTTATTT TTCTACTTGT TCTTCATATA CTACCTCTGC 29710 .......... .......... .......... .......... .......... .......... 108 AAACATCTTT GTAACCAACT TAATTATTTG TGCAACGAAT GTGCTTTGGT TGGGGAGTCT 29770 .......... .......... .......... .......... .......... .......... 108 GAGTTTCTAA CTTTTGGAAG GATTTTGGTC TCTCTTTCTG CGAGAAGTGA AAGATTTTTT 29830 .......... .......... .......... .......... .......... .......... 108 TTTTTGGAAG GATTCCAGAA CAATGATGTC TCGTTTAGTT GTGCTAACTG TGCACCTCAT 29890 .......... .......... .......... .......... .......... .......... 108 ATAACAATAC AGTAACATAT TTGATCTTCA GAACAATTGC GCATGATCTG TTTTTTTTTT 29950 .......... .......... .......... .......... .......... .......... 108 TAATTTTAAC TAATGGATGT GGAAGTATTG CACCTTAGAA TGAAGGTGAT ATTCCTTCAC 30010 .......... .......... .......... .......... .......... .......... 108 TAACCTCCCT GGGAAGTATA TATTACTTTC ATCAAGATAT ACATGTATAT TTTGTGTTTT 30070 .......... .......... .......... .......... .......... .......... 108 TGTTTTGTCC GGCAGAGGGG ACTTCATTTG TGGATTAAGT TTGATGGATA TTTAGTCCAC 30130 .......... .......... .......... .......... .......... .......... 108 GAGGTGTATC ATTTTCTATC TTGAAAAACA CATTAAGTGT TAGTTAGGGT TGGTTATTTA 30190 .......... .......... .......... .......... .......... .......... 108 TCGGGTGCAC ATCGTTCCCA CTGCTCTATG ATGGTTAACT GTTGACCTGC TTTATTTATT 30250 .......... .......... .......... .......... .......... .......... 108 GATCTGACAA TTCTTTTTGG CAAATGTCAC ATTAATGTTT ATTAAACAGG ACAAGATTAC 30310 .......... .......... .......... .......... .......... .......... 108 TTGCACTTTG TCATTAGTTG CAGTCCCAAA AACTTTTAAC TTGCAATATT TGATTATTTT 30370 .......... .......... .......... .......... .......... .......... 108 CATCTTTCTG TTTGTCATAT CCCCCTTCTT TCCCTTTTTC CTGTCTTTTG GCGGGGTGGG 30430 .......... .......... .......... .......... .......... .......... 108 GGTGGATAAT GAATTTCTGA AGAAGGCCAG CTTTGTTGCT TCAAAATTAG TAGTGGTTTT 30490 .......... .......... .......... .......... .......... .......... 108 CTTACTTTAT GGGTCTCATT CTGCATCCTA CAGGCATGTA CTAAAAGGAT AGAAGGTGAT 30550 ||||||| ||| |||||| |||||||||| .......... .......... .......... ...GCATGTA CTAGAAGGAT AGAAGGTGAT 135 GAATCAGGGC ACAAACATTG CACTGGACAG TATTTTGATT ATTGGCACTG CATCGACAAA 30610 ||||||||| ||| ||||| |||||||||| |||||||||| ||||||| || ||| |||||| GAATCAGGGA GCAAGCATTG CACTGGACAG TATTTTGATT ATTGGCAATG CATTGACAAA 195 TGTGTAAGCT CCCTTTTCCG GTTGTTTGGC ATTTTTGTGT TGGGGTTTTC AGGGTGTGCT 30670 ||| TGT....... .......... .......... .......... .......... .......... 198 GCCTCTTGAT TCTTTTCTCC GTTGTTGTCG TTTGTTGTTT TCTTACCTTT TCGTGGAACT 30730 .......... .......... .......... .......... .......... .......... 198 GTTTGCACAG GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT 30790 ||||| | | || | ||||| | |||||| ||||| ||| ||||| |||| .......... GTTGCCCCAA AGCTATTTGA AAAACTCAAG TAACATGGAG ATAAG-TGTT 247 GATCCCTTGC -AATTTATCT T-CTTTTTGG TTGTTGAA 30826 |||| || | | ||||||| | |||||| ||| |||| CATCCATTAC GATTTTATCT TGCTTTTTCA TTGCTGAA 285 hqPGS_C09HBa0099P03.1-2+_SGN-E288157+ (27191 27275,30524 30613,30741 30826) ******************************************************************************** EST sequence 108 -strand 386 n (File: SGN-E223606-) 1 GTAAGTTGCA AGCCTAAGTG TGTAAGGCAG CTAAAGGAGG TATCAGGCAT GTACTAAAAG 61 GATAGAAGGT GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA 121 CTGCATCGAC AAATGTGTTC CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA 181 GTTGTTGATC CCTTGCAATT TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA 241 TTCCTCACTG TGCTGAAGAC TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT 301 TTTGAACTAT GCACATCTTA AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC 361 CCTTTTAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 29481 to 31761): Exon 1 30524 30613 ( 90 n); cDNA 47 136 ( 90 n); score: 1.000 Intron 1 30614 30740 ( 127 n); Pd: 0.940 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 2 30741 30970 ( 230 n); cDNA 137 366 ( 230 n); score: 0.996 PPA cDNA 367 386 MATCH C09HBa0099P03.1-2+ SGN-E223606- 0.997 320 0.829 C PGS_C09HBa0099P03.1-2+_SGN-E223606- (30524 30613,30741 30970) Alignment (genomic DNA sequence = upper lines): GCATGTACTA AAAGGATAGA AGGTGATGAA TCAGGGCACA AACATTGCAC TGGACAGTAT 30583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTACTA AAAGGATAGA AGGTGATGAA TCAGGGCACA AACATTGCAC TGGACAGTAT 106 TTTGATTATT GGCACTGCAT CGACAAATGT GTAAGCTCCC TTTTCCGGTT GTTTGGCATT 30643 |||||||||| |||||||||| |||||||||| TTTGATTATT GGCACTGCAT CGACAAATGT .......... .......... .......... 136 TTTGTGTTGG GGTTTTCAGG GTGTGCTGCC TCTTGATTCT TTTCTCCGTT GTTGTCGTTT 30703 .......... .......... .......... .......... .......... .......... 136 GTTGTTTTCT TACCTTTTCG TGGAACTGTT TGCACAGGTT GCTGCGAAGT TGTTTGACCA 30763 ||| ||||||||| |||||||||| .......... .......... .......... .......GTT CCTGCGAAGT TGTTTGACCA 159 TCTCAAGTAA CAAGGATATA AGTTGTTGAT CCCTTGCAAT TTATCTTCTT TTTGGTTGTT 30823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAAGTAA CAAGGATATA AGTTGTTGAT CCCTTGCAAT TTATCTTCTT TTTGGTTGTT 219 GAACAAGTCA TTACCATATT ATTCCTCACT GTGCTGAAGA CTTGTAACCC TTTCAATCAA 30883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAAGTCA TTACCATATT ATTCCTCACT GTGCTGAAGA CTTGTAACCC TTTCAATCAA 279 CTTGGTTGCT GCATGGAAAA TTTTGAACTA TGCACATCTT AAAAAGTGAT TAATAAATCA 30943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGTTGCT GCATGGAAAA TTTTGAACTA TGCACATCTT AAAAAGTGAT TAATAAATCA 339 TACTCGTGGG TTGAATTGGA CCCTTTT 30970 |||||||||| |||||||||| ||||||| TACTCGTGGG TTGAATTGGA CCCTTTT 366 hqPGS_C09HBa0099P03.1-2+_SGN-E223606- (30524 30613,30741 30970) ******************************************************************************** EST sequence 64 +strand 244 n (File: SGN-E347619+) 1 CGAAGTTGTT TGACCATCTC AAGTAACAAG GATATAAGTT GTTGATCCCT TGCAATTTAT 61 CTTCTTTTTG GTTGTTGAAC AAGTCATTAC CATATTATTC CTCACTGTGC TGAAGACTTG 121 TAACCCTTTC AATCAACTTG GTTGCTGCAT GGAAAATTTT GAACTATGCA CATCTTAAAA 181 AGTGATTAAT AAATCATACT CGTGGGTTGA ATTGGACCCT TTTATTCGTT CGAAAAAAAA 241 AAAA Predicted gene structure (within gDNA segment 30148 to 31691): Exon 1 30748 30991 ( 244 n); cDNA 1 244 ( 244 n); score: 0.975 MATCH C09HBa0099P03.1-2+ SGN-E347619+ 0.975 244 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E347619+ (30748 30991) Alignment (genomic DNA sequence = upper lines): CGAAGTTGTT TGACCATCTC AAGTAACAAG GATATAAGTT GTTGATCCCT TGCAATTTAT 30807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGTTGTT TGACCATCTC AAGTAACAAG GATATAAGTT GTTGATCCCT TGCAATTTAT 60 CTTCTTTTTG GTTGTTGAAC AAGTCATTAC CATATTATTC CTCACTGTGC TGAAGACTTG 30867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTTTTTG GTTGTTGAAC AAGTCATTAC CATATTATTC CTCACTGTGC TGAAGACTTG 120 TAACCCTTTC AATCAACTTG GTTGCTGCAT GGAAAATTTT GAACTATGCA CATCTTAAAA 30927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACCCTTTC AATCAACTTG GTTGCTGCAT GGAAAATTTT GAACTATGCA CATCTTAAAA 180 AGTGATTAAT AAATCATACT CGTGGGTTGA ATTGGACCCT TTTATTCGTT CGAATTATTG 30987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| | AGTGATTAAT AAATCATACT CGTGGGTTGA ATTGGACCCT TTTATTCGTT CGAAAAAAAA 240 AGAA 30991 | || AAAA 244 hqPGS_C09HBa0099P03.1-2+_SGN-E347619+ (30748 30991) ******************************************************************************** EST sequence 45 +strand 402 n (File: SGN-E288157+) 1 TCGTATCCAA TATCTCGTTG GATGTCGGAC GAGGAAGTTG TTGACCCAAA GGCGACAATG 61 GAAGTATCTT GCAAGCCTAA GTGTGTAAGG CAACTAAAGG ATTATCAGGC ATGTACTAGA 121 AGGATAGAAG GTGATGAATC AGGGAGCAAG CATTGCACTG GACAGTATTT TGATTATTGG 181 CAATGCATTG ACAAATGTGT TGCCCCAAAG CTATTTGAAA AACTCAAGTA ACATGGAGAT 241 AAGTGTTCAT CCATTACGAT TTTATCTTGC TTTTTCATTG CTGAAGCCTG TGCTACAGAC 301 TTGCAATCCC TTCAATCAAC TTAGTTGCCG CATGGAAAAT TTTGTACTAT GCACATTATT 361 AAGAAGTGAT TAATAAAGGA TACTTATGGG TTAAAAAAAA AA Predicted gene structure (within gDNA segment 35148 to 38143): Exon 1 35978 36062 ( 85 n); cDNA 24 108 ( 85 n); score: 1.000 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 37093 37182 ( 90 n); cDNA 109 198 ( 90 n); score: 1.000 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 37267 37463 ( 197 n); cDNA 199 395 ( 197 n); score: 0.995 MATCH C09HBa0099P03.1-2+ SGN-E288157+ 0.997 372 0.925 C PGS_C09HBa0099P03.1-2+_SGN-E288157+ (35978 36062,37093 37182,37267 37463) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 83 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||||| ||||| TGTAAGGCAA CTAAAGGATT ATCAG..... .......... .......... .......... 108 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 108 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 108 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 108 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 108 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 108 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 108 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 108 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 108 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 108 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 108 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 108 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 108 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 108 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 108 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 108 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 108 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCATG TACTAGAAGG ATAGAAGGTG 133 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 193 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 198 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TTGCCCCAAA GCTATTTGAA AAACTCAAGT 229 AACATGGAGA TAAGTGTTCA TCCATTACGA TTTTATCTTG CTTTTTCATT GTTGAAGCCT 37357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| AACATGGAGA TAAGTGTTCA TCCATTACGA TTTTATCTTG CTTTTTCATT GCTGAAGCCT 289 GTGCTACAGA CTTGCAATCC CTTCAATCAA CTTAGTTGCC GCATGGAAAA TTTTGTACTA 37417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTACAGA CTTGCAATCC CTTCAATCAA CTTAGTTGCC GCATGGAAAA TTTTGTACTA 349 TGCACATTAT TAAGAAGTGA TTAATAAAGG ATACTTATGG GTTAAA 37463 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGCACATTAT TAAGAAGTGA TTAATAAAGG ATACTTATGG GTTAAA 395 hqPGS_C09HBa0099P03.1-2+_SGN-E288157+ (35978 36062,37093 37182,37267 37463) ******************************************************************************** EST sequence 4 +strand 504 n (File: SGN-E242585+) 1 TCATTCTAGA ACAGTCAGGT GATTTTGCAG AATCGAAGTC TTCGTCTCGA ATATCTCTTT 61 GCCATGTCGG ACGAGGAAGT TGTTGACCCA AAGGCGACAT TAGAAGTAAG TTGCAAGCCT 121 AAGTGTGTAA GGCAACTAAA GGAGTATCAG GCATGTACTA AAAGGATAGA AGGTGATGAA 181 TCAGGGCACA AACATTGCAC TGGACAGTAT TTTGATTATT GGCACTGCAT CGACAAATGT 241 GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC 301 AATTTATCTT CTTTTTGGTT GTTGAACAAG TCATTACCAT ATTATTCCTC ACTGTGCTGA 361 AGACTTGTAA CCCTTTCAAT CAACTTGGTT GCTGCATGGA AAATTTTGAA CTATGCACAT 421 CTTAAAAAGT GATTAATAAA TCATACTCGT GGGTTGAATT GGACCCTTTT ATTCGTTCGA 481 ATTNNNNNAA ANAAAANAAA AAAA Predicted gene structure (within gDNA segment 34728 to 40576): Exon 1 35978 36062 ( 85 n); cDNA 66 150 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 151 240 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 241 342 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 343 350 ( 8 n); score: 0.778 MATCH C09HBa0099P03.1-2+ SGN-E242585+ 0.848 288 0.571 C PGS_C09HBa0099P03.1-2+_SGN-E242585+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 125 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 150 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 150 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 150 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 150 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 150 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 150 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 150 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 150 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 150 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 150 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 150 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 150 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 150 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 150 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 150 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 150 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 150 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 175 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 235 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 240 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 271 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 328 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 342 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 342 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 342 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 342 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 342 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 342 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 342 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 342 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 342 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 342 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 342 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 342 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 342 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 342 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 342 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 342 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 342 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 342 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 342 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 342 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 342 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 342 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 342 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 346 GCTC 38800 ||| CCTC 350 hqPGS_C09HBa0099P03.1-2+_SGN-E242585+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 6 +strand 482 n (File: SGN-E242586+) 1 TCATTCTAGA ACAGTCAGGT GATTTTGCAG AATCGAAGTC TTCGTCTCGA ATATCTCTTT 61 GCCATGTCGG ACGAGGAAGT TGTTGACCCA AAGGCGACAT TAGAAGTAAG TTGCAAGCCT 121 AAGTGTGTAA GGCAACTAAA GGAGTATCAG GCATGTACTA AAAGGATAGA AGGTGATGAA 181 TCAGGGCACA AACATTGCAC TGGACAGTAT TTTGATTATT GGCACTGCAT CGACAAATGT 241 GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC 301 AATTTATCTT CTTTTTGGTT GTTGAACAAG TCATTACCAT ATTATTCCTC ACTGTGCTGA 361 AGACTTGTAA CCCTTTCAAT CAACTTGGTT GCTGCATGGA AAATTTTGAA CTATGCACAT 421 CTTAAAAAGT GATTAATAAA TCATACTCGT GGGTTGAATT GGACCCTTTT ATTCGTTCGA 481 AT Predicted gene structure (within gDNA segment 34728 to 40356): Exon 1 35978 36062 ( 85 n); cDNA 66 150 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 151 240 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 241 342 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 343 350 ( 8 n); score: 0.778 MATCH C09HBa0099P03.1-2+ SGN-E242586+ 0.848 288 0.598 C PGS_C09HBa0099P03.1-2+_SGN-E242586+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 125 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 150 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 150 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 150 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 150 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 150 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 150 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 150 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 150 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 150 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 150 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 150 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 150 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 150 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 150 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 150 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 150 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 150 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 175 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 235 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 240 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 271 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 328 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 342 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 342 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 342 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 342 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 342 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 342 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 342 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 342 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 342 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 342 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 342 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 342 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 342 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 342 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 342 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 342 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 342 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 342 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 342 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 342 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 342 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 342 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 342 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 346 GCTC 38800 ||| CCTC 350 hqPGS_C09HBa0099P03.1-2+_SGN-E242586+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 8 +strand 475 n (File: SGN-E304713+) 1 CGCAGCTCAT TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT 61 CTCTTTGCCA TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC 121 AAGCCTAAGT GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT 181 GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC 241 AAATGTGTTG CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC 301 CCTTGCAATT TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG 361 TGCTGAAGAC TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT 421 GCACATCTTA AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTA Predicted gene structure (within gDNA segment 34668 to 40226): Exon 1 35978 36062 ( 85 n); cDNA 72 156 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 157 246 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 247 348 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 349 356 ( 8 n); score: 0.778 MATCH C09HBa0099P03.1-2+ SGN-E304713+ 0.848 288 0.606 C PGS_C09HBa0099P03.1-2+_SGN-E304713+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 131 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 156 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 156 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 156 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 156 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 156 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 156 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 156 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 156 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 156 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 156 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 156 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 156 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 156 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 156 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 156 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 156 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 156 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 181 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 241 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 246 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 277 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 334 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 348 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 348 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 348 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 348 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 348 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 348 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 348 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 348 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 348 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 348 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 348 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 348 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 348 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 348 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 348 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 348 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 348 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 348 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 348 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 348 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 348 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 348 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 348 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 352 GCTC 38800 ||| CCTC 356 hqPGS_C09HBa0099P03.1-2+_SGN-E304713+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 19 +strand 504 n (File: SGN-E373663+) 1 TCTAGAACAG TCAGTTGCAC TTGCAGGTGA TTTTGCAGAA TCGAAGTCTT CGTCTCGAAT 61 ATCTCTTTGC CATGTCGGAC GAGGAAGTTG TTGACCCAAA GGCGACATTA GAAGTAAGTT 121 GCAAGCCTAA GTGTGTAAGG CAACTAAAGG AGTATCAGGC ATGTACTAAA AGGATAGAAG 181 GTGATGAATC AGGGCACAAA CATTGCACTG GACAGTATTT TGATTATTGG CACTGCATCG 241 ACAAATGTGT TGCTGCGAAG TTGTTTGACC ATCTCAAGTA ACAAGGATAT AAGTTGTTGA 301 TCCCTTGCAA TTTATCTTCT TTTTGGTTGT TGAACAAGTC ATTACCATAT TATTCCTCAC 361 TGTGCTGAAG ACTTGTAACC CTTTCAATCA ACTTGGTTGC TGCATGGAAA ATTTTGAACT 421 ATGCACATCT TAAAAAGTGA TTAATAAATC ATACTCGTGG GTTGAATTGG ACCCTTTTAT 481 TCGTTCGAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 34648 to 40496): Exon 1 35978 36062 ( 85 n); cDNA 74 158 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 159 248 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 249 350 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 351 358 ( 8 n); score: 0.778 PPA cDNA 488 504 MATCH C09HBa0099P03.1-2+ SGN-E373663+ 0.848 288 0.571 C PGS_C09HBa0099P03.1-2+_SGN-E373663+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 133 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 158 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 158 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 158 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 158 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 158 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 158 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 158 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 158 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 158 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 158 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 158 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 158 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 158 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 158 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 158 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 158 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 158 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 183 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 243 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 248 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 279 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 336 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 350 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 350 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 350 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 350 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 350 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 350 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 350 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 350 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 350 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 350 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 350 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 350 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 350 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 350 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 350 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 350 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 350 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 350 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 350 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 350 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 350 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 350 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 350 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 354 GCTC 38800 ||| CCTC 358 hqPGS_C09HBa0099P03.1-2+_SGN-E373663+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 23 +strand 440 n (File: SGN-E334870+) 1 TAGAACAGTC AGGTGATTTT GCAGAATCGA AGTCTTCGTC TCGAATATCT CTTTGCCATG 61 TCGGACGAGG AAGTTGTTGA CCCAAAGGCG ACATTAGAAG TAAGTTGCAA GCCTAAGTGT 121 GTAAGGCAAC TAAAGGAGTA TCAGGCATGT ACTAAAAGGA TAGAAGGTGA TGAATCAGGG 181 CACAAACATT GCACTGGACA GTATTTTGAT TATTGGCACT GCATCGACAA ATGTGTTGCT 241 GCGAAGTTGT TTGACCATCT CAAGTAACAA GGATATAAGT TGTTGATCCC TTGCAATTTA 301 TCTTCTTTTT GGTTGTTGAA CAAGTCATTA CCATATTATT CCTCACTGTG CTGAAGACTT 361 GTAACCCTTT CAATCAACTT GGTTGCTGCA TGGAAAATTT TGAACTATGC ACATCTTAAA 421 AAGTGATTAA TAAATCATAC Predicted gene structure (within gDNA segment 34788 to 39996): Exon 1 35978 36062 ( 85 n); cDNA 60 144 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 145 234 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 235 336 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 337 344 ( 8 n); score: 0.778 MATCH C09HBa0099P03.1-2+ SGN-E334870+ 0.848 288 0.655 C PGS_C09HBa0099P03.1-2+_SGN-E334870+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 119 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 144 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 144 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 144 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 144 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 144 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 144 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 144 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 144 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 144 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 144 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 144 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 144 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 144 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 144 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 144 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 144 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 144 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 169 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 229 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 234 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 265 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 322 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 336 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 336 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 336 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 336 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 336 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 336 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 336 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 336 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 336 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 336 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 336 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 336 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 336 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 336 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 336 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 336 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 336 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 336 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 336 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 336 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 336 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 336 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 336 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 340 GCTC 38800 ||| CCTC 344 hqPGS_C09HBa0099P03.1-2+_SGN-E334870+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 30 +strand 497 n (File: SGN-E298958+) 1 CGCAGCTCAT TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT 61 CTCTTTGCCA TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC 121 AAGCCTAAGT GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT 181 GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC 241 AAATGTGTTG CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC 301 CCTTGCAATT TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG 361 TGCTGAAGAC TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT 421 GCACATCTTA AAAAGTGATT AATAAATCAT ACGTCGTGGG TTGAAATTGG ACCCTTTTAT 481 TCGCTCGAAA AAAAAAA Predicted gene structure (within gDNA segment 34668 to 40446): Exon 1 35978 36062 ( 85 n); cDNA 72 156 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 157 246 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 247 348 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 349 356 ( 8 n); score: 0.778 PPA cDNA 488 497 MATCH C09HBa0099P03.1-2+ SGN-E298958+ 0.848 288 0.579 C PGS_C09HBa0099P03.1-2+_SGN-E298958+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 131 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 156 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 156 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 156 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 156 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 156 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 156 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 156 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 156 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 156 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 156 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 156 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 156 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 156 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 156 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 156 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 156 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 156 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 181 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 241 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 246 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 277 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 334 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 348 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 348 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 348 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 348 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 348 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 348 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 348 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 348 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 348 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 348 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 348 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 348 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 348 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 348 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 348 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 348 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 348 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 348 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 348 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 348 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 348 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 348 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 348 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 352 GCTC 38800 ||| CCTC 356 hqPGS_C09HBa0099P03.1-2+_SGN-E298958+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 37 +strand 486 n (File: SGN-E354446+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT CTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC 361 TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA 421 AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGAAAAA 481 AAAAAA Predicted gene structure (within gDNA segment 34768 to 40436): Exon 1 35978 36062 ( 85 n); cDNA 62 146 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 147 236 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 237 338 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 339 346 ( 8 n); score: 0.778 PPA cDNA 476 486 MATCH C09HBa0099P03.1-2+ SGN-E354446+ 0.848 288 0.593 C PGS_C09HBa0099P03.1-2+_SGN-E354446+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 121 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 146 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 146 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 146 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 146 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 146 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 146 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 146 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 146 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 146 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 146 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 146 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 146 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 146 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 146 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 146 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 146 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 146 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 171 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 231 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 236 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 267 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 324 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 338 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 338 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 338 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 338 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 338 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 338 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 338 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 338 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 338 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 338 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 338 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 338 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 338 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 338 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 338 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 338 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 338 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 338 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 338 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 338 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 338 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 338 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 338 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 342 GCTC 38800 ||| CCTC 346 hqPGS_C09HBa0099P03.1-2+_SGN-E354446+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 47 +strand 486 n (File: SGN-E356702+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT CTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC 361 TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA 421 AAAAGTGATT AATAAATCAT ACTCGTGGGT TAAATTGGAC CCTTTTATTC GTTCGAAAAA 481 AAAAAA Predicted gene structure (within gDNA segment 34768 to 40436): Exon 1 35978 36062 ( 85 n); cDNA 62 146 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 147 236 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 237 338 ( 102 n); score: 0.697 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 339 346 ( 8 n); score: 0.778 PPA cDNA 476 486 MATCH C09HBa0099P03.1-2+ SGN-E356702+ 0.848 288 0.593 C PGS_C09HBa0099P03.1-2+_SGN-E356702+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 121 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 146 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 146 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 146 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 146 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 146 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 146 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 146 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 146 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 146 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 146 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 146 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 146 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 146 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 146 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 146 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 146 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 146 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 171 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 231 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 236 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 267 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGTTGAA-CA 324 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 338 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 338 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 338 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 338 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 338 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 338 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 338 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 338 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 338 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 338 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 338 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 338 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 338 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 338 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 338 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 338 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 338 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 338 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 338 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 338 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 338 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 338 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 338 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 342 GCTC 38800 ||| CCTC 346 hqPGS_C09HBa0099P03.1-2+_SGN-E356702+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 53 +strand 498 n (File: SGN-E239491+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT GTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTGGTTGGTG AACAAGTCAT TACCATATTA TTCCTCACTG TGCTGAAGAC 361 TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT TTTGAACTAT GCACATCTTA 421 AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC CCTTTTATTC GTTCGATTAA 481 AAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 34768 to 40556): Exon 1 35978 36062 ( 85 n); cDNA 62 146 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 147 236 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 237 338 ( 102 n); score: 0.688 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.62), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 339 346 ( 8 n); score: 0.778 PPA cDNA 479 498 MATCH C09HBa0099P03.1-2+ SGN-E239491+ 0.844 288 0.578 C PGS_C09HBa0099P03.1-2+_SGN-E239491+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 121 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 146 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 146 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 146 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 146 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 146 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 146 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 146 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 146 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 146 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 146 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 146 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 146 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 146 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 146 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 146 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 146 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 146 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 171 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 231 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 236 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 267 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | |||||||| |||||| | || |||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGGTGAA-CA 324 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 338 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 338 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 338 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 338 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 338 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 338 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 338 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 338 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 338 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 338 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 338 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 338 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 338 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 338 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 338 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 338 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 338 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 338 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 338 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 338 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 338 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 338 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 338 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 342 GCTC 38800 ||| CCTC 346 hqPGS_C09HBa0099P03.1-2+_SGN-E239491+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 60 +strand 451 n (File: SGN-E283872+) 1 TGCAGAATCG AAGTCTTCGT CTTGAATATC TCTTTGCCAT GTCGGACGAG GAAGTTGTTG 61 ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG TGTAAGGCAA CTAAAGGAGT 121 ATCAGGCATG TACTAAAAGG ATAGAAGGTG ATGAATCATG GCACAAACAT TGCACTGGAC 181 AGTATTTTGA TTATTGGCAC TGCATCTACA AATGTGTTGC TGCGAAGTTG TTTGACCATC 241 TCAGGTCACA AGGATATAAG TTGTTGATCC CTTGCAATTT ATCTTCTTTT TGGTTGCTGA 301 ACAAGTCATT ACCATATTAT TCCTCACTGT GCTGAAGACT TGTAACCCTT TCAATCAACT 361 TGGTTGCTGC ATGGAAAATT TTGAACTATG CACATCTTAA AGAGTGATTA ATAAATCATA 421 CTCGCGGGTT GAATTGGACC CTTTTATTCG T Predicted gene structure (within gDNA segment 34978 to 40296): Exon 1 35978 36062 ( 85 n); cDNA 41 125 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.90) Exon 2 37093 37182 ( 90 n); cDNA 126 215 ( 90 n); score: 0.911 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.92), Pa: 0.998 (s: 0.70) Exon 3 37267 37370 ( 104 n); cDNA 216 317 ( 102 n); score: 0.668 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.62), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 318 325 ( 8 n); score: 0.778 MATCH C09HBa0099P03.1-2+ SGN-E283872+ 0.830 288 0.639 C PGS_C09HBa0099P03.1-2+_SGN-E283872+ (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 100 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 125 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 125 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 125 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 125 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 125 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 125 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 125 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 125 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 125 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 125 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 125 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 125 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 125 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 125 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 125 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 125 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 125 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 150 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||| | | ||| ||| |||||||||| |||||||||| ||||||||| ||||| ||| ATGAATCATG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCTACA 210 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 215 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | |||| || .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAGGT 246 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 ||| ||| | |||| |||| |||| || | | |||||||| |||||| | || |||| | CACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTTGGT TGCTGAA-CA 303 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 317 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 317 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 317 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 317 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 317 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 317 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 317 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 317 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 317 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 317 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 317 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 317 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 317 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 317 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 317 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 317 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 317 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 317 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 317 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 317 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 317 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 317 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 317 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 321 GCTC 38800 ||| CCTC 325 hqPGS_C09HBa0099P03.1-2+_SGN-E283872+ (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 78 -strand 504 n (File: SGN-E373662-) 1 TTCTAGAACA GTCAGTTGCA CTTGCAGGTG ATTTTGCAGA ATCGAAGTTT TCGTCTCGAA 61 TATCTCTTTG CCATGTCGGA CGAGGAAGTT GTTGACCCAA AGGCGACATT AAAAGTAAGT 121 TGCAAGCCTA AGTGTGTAAG GCAACTAAAG GAGTATCAGG CATGTACTAA AAGGATAGAA 181 GGTGATGAAT CAGGGCACAA ACATTGCACT GGACAGTATT TTGATTATTG GCACTGCATC 241 GACAAATGTG TTGCTGCGAA GTTGTTTGAC CATCTCAAGT AACAAGGATA TAAGTTGTTG 301 ATCCCTTGCA ATTTATTTTC TTTTTGGTTG TTGAACAAGT CATTACCATA TTATTCCTCA 361 CTGTGCTGAA GACTTGTAAC CCTTTCAATC AACTTGGTTG CTGCATGGAA AATTTTGAAC 421 TATGCACATC TTAAAAAGTG ATTAATAAAT CATACTCGTG GGTTGAATTG GACCCTTTTA 481 TTCGTTCGAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 34628 to 40476): Exon 1 35978 36062 ( 85 n); cDNA 75 159 ( 85 n); score: 0.929 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 160 249 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37370 ( 104 n); cDNA 250 351 ( 102 n); score: 0.688 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.62), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 352 359 ( 8 n); score: 0.778 PPA cDNA 489 504 MATCH C09HBa0099P03.1-2+ SGN-E373662- 0.841 288 0.571 C PGS_C09HBa0099P03.1-2+_SGN-E373662- (35978 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | || ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAAAA GTAAGTTGCA AGCCTAAGTG 134 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 159 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 159 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 159 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 159 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 159 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 159 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 159 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 159 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 159 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 159 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 159 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 159 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 159 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 159 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 159 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 159 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 159 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 184 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 244 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 249 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 280 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTTCAT TGTTGAAGCC 37356 |||| ||| | |||| |||| |||| || | | ||||| || |||||| | ||||||| | AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTAT-TT TCTTTTTGGT TGTTGAA-CA 337 TGTGCTACAG ACTTGCAATC CCTTCAATCA ACTTAGTTGC CGCATGGAAA ATTTTGTACT 37416 || | | | AGTCATTACC ATAT...... .......... .......... .......... .......... 351 ATGCACATTA TTAAGAAGTG ATTAATAAAG GATACTTATG GGTTAAATTT TGTGGACACT 37476 .......... .......... .......... .......... .......... .......... 351 TTTATTTGGT CAGATGATTC AAAATCCGGA GGACATTATT CCCAGATTTT TGTTCTCTCT 37536 .......... .......... .......... .......... .......... .......... 351 TGCGTTGTTA TATGAGCTCC CAGTTACCTA ATTTCTTTAT GGGAGGAAAT ATCATAAATC 37596 .......... .......... .......... .......... .......... .......... 351 AGTGATTTAT ATAAGCCCAT TTCTTCTTAG TTTTGGTTGT TTTGTGGTTT ATAGTCCTGA 37656 .......... .......... .......... .......... .......... .......... 351 ATTAGTGTGG CATTAAAATT TGCATGCAAC CCTTTAGGTC GAGAATATTG CTAAATGAGT 37716 .......... .......... .......... .......... .......... .......... 351 CATAGAGTAG ACAAAAGTGC AAGGTACAGT CAACTGCTAG AGTGATGTTC CTCACTGTAT 37776 .......... .......... .......... .......... .......... .......... 351 TTGTGGGTTT TCTTCTGGGC TGTCTTCTTA TTTAGCCGAT GGAGAGGTAA TAGGTATCCT 37836 .......... .......... .......... .......... .......... .......... 351 GTGAAATTGT TGATGGAGTG TTCACCTAAC ACTATAACAT GTTAATCTAT GCGTAATCAA 37896 .......... .......... .......... .......... .......... .......... 351 ACCATGTGGC AACTTTATCA TAAAAACAAG ACAAGTAAAT TGAAATGGAT GGAGTAATTT 37956 .......... .......... .......... .......... .......... .......... 351 TTATGGAATA ATTAGGTTTT TGTTTTAGTT GTTGACTTGT GATGACAAAT CAAAGGTTTC 38016 .......... .......... .......... .......... .......... .......... 351 TTATCTTCTT TAGGTGCTTT GTTTTTAATC TGTGGATATC TTATTGATTT TTTAGAGCTT 38076 .......... .......... .......... .......... .......... .......... 351 CCTGATTCTG TATGCTTATT CACTTGTTTG TCAAGCAGGA TGAGAAGTAT ATATGTTCTC 38136 .......... .......... .......... .......... .......... .......... 351 TATATAATGA AATGACTAAA GATTTTTTTT TGAATTGAAA ATTACAGAGA AAGAGTCTGT 38196 .......... .......... .......... .......... .......... .......... 351 TTTTAAGAAA TATAGTTTTA CTGTACAAAA TAGATATGGG AGTACATATT TTGAATACAG 38256 .......... .......... .......... .......... .......... .......... 351 GGAATACGAT TCTTTTTGGT TTTCACCGTC CTCCGAAAAT AATTATAACT TATAAATATA 38316 .......... .......... .......... .......... .......... .......... 351 CATAAATTAT ACACTAATGA TGTATAATTT TGCGTATATT ATACATCCGT AGATAATTAT 38376 .......... .......... .......... .......... .......... .......... 351 TTTGGACGGT GGCGATACAG TGTGAAAATC CCCTTTTAAT GTTTAAGAAT GGGTCCAAAA 38436 .......... .......... .......... .......... .......... .......... 351 CCCCAAGAAC ATGATAGTTC TAATGGGATC TTCCATGTTT GAACTCTTTC TTCTTTGATT 38496 .......... .......... .......... .......... .......... .......... 351 TTGATTTTCT TTGGAATTTT GTTTTGATTT TGAGAGCTTT TCTCTGGTTG TTCTCTTTGA 38556 .......... .......... .......... .......... .......... .......... 351 TTTGTGAATC AAAGATTTAT CATCTTCAGA GAAATGGTGA GGCTTCATCC GTGTGTTGAA 38616 .......... .......... .......... .......... .......... .......... 351 ATGTTTTACT TAAGATATTG AAGCTTCTTA TAAATTGTGG ACAAAATACA AACAAATTTA 38676 .......... .......... .......... .......... .......... .......... 351 TAGAAAAAAA CTTCATGAAA TGAGAAAAGC ATTAGAGATG GAATATATGA TAGATATCTC 38736 .......... .......... .......... .......... .......... .......... 351 CATTTATTAA GCATATATTC CTTATGTCTG TTGATGTGGA TGGTGTATAT ATCAGTATTT 38796 || || .......... .......... .......... .......... .......... .....TA-TT 355 GCTC 38800 ||| CCTC 359 hqPGS_C09HBa0099P03.1-2+_SGN-E373662- (35978 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 15 +strand 313 n (File: SGN-E231655+) 1 TCTAGAACAG TCAGGTGATT TTGCAGAATC GAAGTCTTCG TCTCGAATAT CTCTTTGCCA 61 TGTCGGACGA GGAAGTTGTT GACCCAAAGG CGACATTAGA AGTAAGTTGC AAGCCTAAGT 121 GTGTAAGGCA ACTAAAGGAG TATCAGGCAT GTACTAAAAG GATAGAAGGT GATGAATCAG 181 GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA CTGCATCGAC AAATGTGTTG 241 CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA GTTGTTGATC CCTTGCAATT 301 TATCTTCTTT TTG Predicted gene structure (within gDNA segment 34768 to 38706): Exon 1 35978 36062 ( 85 n); cDNA 62 146 ( 85 n); score: 0.941 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 147 236 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37343 ( 77 n); cDNA 237 312 ( 76 n); score: 0.760 MATCH C09HBa0099P03.1-2+ SGN-E231655+ 0.883 252 0.805 C PGS_C09HBa0099P03.1-2+_SGN-E231655+ (35978 36062,37093 37182,37267 37343) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 121 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 146 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 146 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 146 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 146 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 146 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 146 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 146 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 146 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 146 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 146 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 146 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 146 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 146 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 146 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 146 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 146 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 146 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 171 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 231 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 236 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 267 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTT 37343 |||| ||| | |||| |||| |||| || | | |||||||| |||||| AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTT 312 hqPGS_C09HBa0099P03.1-2+_SGN-E231655+ (35978 36062,37093 37182,37267 37343) ******************************************************************************** EST sequence 57 +strand 317 n (File: SGN-E241261+) 1 TCATTCTAGA ACAGTCAGGT GATTTTGCAG AATCGAAGTC TTCGTCTCGA ATATCTCTTT 61 GCCATGTCCG ACGAGGAAGT TGTTGACCCA AAGGCGACAT TAGAAGTAAG TTGCAAGCCT 121 AAGTGTGTAA GGCAACTAAA GGAGTATCAG GCATGTACTA AAAGGATAGA AGGTGATGAA 181 TCAGGGCACA AACATTGCAC TGGACAGTAT TTTGATTATT GGCACTGCAT CGACAAATGT 241 GTTGCTGCGA AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC 301 AATTTATCTT CTTTTTG Predicted gene structure (within gDNA segment 34692 to 38706): Exon 1 35978 36062 ( 85 n); cDNA 66 150 ( 85 n); score: 0.929 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.92), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 151 240 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.74) Exon 3 37267 37343 ( 77 n); cDNA 241 316 ( 76 n); score: 0.760 MATCH C09HBa0099P03.1-2+ SGN-E241261+ 0.879 252 0.795 C PGS_C09HBa0099P03.1-2+_SGN-E241261+ (35978 36062,37093 37182,37267 37343) Alignment (genomic DNA sequence = upper lines): GTCGGACGAG GAAGTTGTTG ACCCAAAGGC GACAATGGAA GTATCTTGCA AGCCTAAGTG 36037 ||| |||||| |||||||||| |||||||||| |||| | ||| ||| ||||| |||||||||| GTCCGACGAG GAAGTTGTTG ACCCAAAGGC GACATTAGAA GTAAGTTGCA AGCCTAAGTG 125 TGTAAGGCAA CTAAAGGATT ATCAGGTGAT TCCCACCATA ACAAAACAGC CTTTCAGTTA 36097 |||||||||| |||||||| | ||||| TGTAAGGCAA CTAAAGGAGT ATCAG..... .......... .......... .......... 150 TATCAAAGGG ATTTTCTTGT TCTTATATAA TTGTTATTGG GTGAGCTGTA ACTTGGACTT 36157 .......... .......... .......... .......... .......... .......... 150 GATTGTTTGC GGTGGTGGAA GGCTAATTTT TATTATTGTT AACATTATCC TGTACGGTCT 36217 .......... .......... .......... .......... .......... .......... 150 CCACAAGAAC TCAGAGTGAC ACAAAAATGT CTTGGCAATG TCATGTTAGA CCTGAAAATT 36277 .......... .......... .......... .......... .......... .......... 150 GTAAATTTGG AAAACATCAA GTACTATGGC CGACATATGA CCTAACATAG TATGTATCAC 36337 .......... .......... .......... .......... .......... .......... 150 TTGAACTTTC AGCTACTCTA ATTACCAAAT CAACTGATAT AGTAAGCCAG GAGAATTTTC 36397 .......... .......... .......... .......... .......... .......... 150 TTGTTATGTC ACTCTAATGG GATGAACCAA CATGTGACGA AGAGACTTAA TCTGTAACTG 36457 .......... .......... .......... .......... .......... .......... 150 CTTGGTCTTT CCAAGTAGCC AAAAAGGCAT GTTTATGGGC CTCCAAGTAC ACCCACCGAC 36517 .......... .......... .......... .......... .......... .......... 150 CTCCTCTCAT ATTGGCTCTC CAGATTCAAC TGGTCAGCAG AATGCTAGTA TTTCTATGAT 36577 .......... .......... .......... .......... .......... .......... 150 CTTTTTTGTT TCCTCTGCTC ATTTTTCTGT ATCATATGTG TCTATCGGGT CCATTGTTCT 36637 .......... .......... .......... .......... .......... .......... 150 TTCTATTGCC AACAATTTGC TGTAACAATT TTTTATGAAG AACACAGTGC TGTAAGGTTT 36697 .......... .......... .......... .......... .......... .......... 150 TGATTATCAA AGACTCAGAG TTTTAATTTC GATCCCGTTA AACCTTTCCG AGTTAGTTTT 36757 .......... .......... .......... .......... .......... .......... 150 GGCTTTCAAC TTCTTGTTAT TCATCTACTC CCTCTGCCTA AATCTTTTAA TCAACTTAAT 36817 .......... .......... .......... .......... .......... .......... 150 GGTTTGTGCA AAGGATGTGC TTTGGACATG GGGAATCTGG GATTTTTGTG TGTTATGCTT 36877 .......... .......... .......... .......... .......... .......... 150 GAAGGATGAT ATCTAATTGA TTTGTGACAA CTACCACCTT AGATAACTGT ACAGTAGCAT 36937 .......... .......... .......... .......... .......... .......... 150 TCGTTTGATC TTCAGAACAA TTGCATTTAA CTGTTCTGTG CACTTCCTGA ACATTTATGT 36997 .......... .......... .......... .......... .......... .......... 150 CTCGTTCATT TGTTCTGAAT TTGTGCAAAT GTATTTAAAA TTTGTACCGA CTTTCATACT 37057 .......... .......... .......... .......... .......... .......... 150 TTGTGGCTCT TATTTGGGTA TTTTGCATCC TACAGGCATG TACTAGAAGG ATAGAAGGTG 37117 ||||| ||||| |||| |||||||||| .......... .......... .......... .....GCATG TACTAAAAGG ATAGAAGGTG 175 ATGAATCAGG GAGCAAGCAT TGCACTGGAC AGTATTTTGA TTATTGGCAA TGCATTGACA 37177 |||||||||| | ||| ||| |||||||||| |||||||||| ||||||||| ||||| |||| ATGAATCAGG GCACAAACAT TGCACTGGAC AGTATTTTGA TTATTGGCAC TGCATCGACA 235 AATGTGTAAG CTCTATTTCT CTATTCTCCG TTGTTGCTCT ATTTAGCATT TCGTTTTGTT 37237 ||||| AATGT..... .......... .......... .......... .......... .......... 240 TCTAAACTTT TTATGGAATT GTTACACAGG TTGCCCCAAA GCTATTTGAA AAACTCAAGT 37297 | |||| | || | | ||||| | ||||||| .......... .......... .........G TTGCTGCGAA GTTGTTTGAC CATCTCAAGT 271 AACATGGAGA TAAG-TGTTC ATCCATTACG ATTTTATCTT GCTTTTT 37343 |||| ||| | |||| |||| |||| || | | |||||||| |||||| AACAAGGATA TAAGTTGTTG ATCCCTTGC- AATTTATCTT -CTTTTT 316 hqPGS_C09HBa0099P03.1-2+_SGN-E241261+ (35978 36062,37093 37182,37267 37343) ******************************************************************************** EST sequence 109 -strand 386 n (File: SGN-E223606-) 1 GTAAGTTGCA AGCCTAAGTG TGTAAGGCAG CTAAAGGAGG TATCAGGCAT GTACTAAAAG 61 GATAGAAGGT GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG ATTATTGGCA 121 CTGCATCGAC AAATGTGTTC CTGCGAAGTT GTTTGACCAT CTCAAGTAAC AAGGATATAA 181 GTTGTTGATC CCTTGCAATT TATCTTCTTT TTGGTTGTTG AACAAGTCAT TACCATATTA 241 TTCCTCACTG TGCTGAAGAC TTGTAACCCT TTCAATCAAC TTGGTTGCTG CATGGAAAAT 301 TTTGAACTAT GCACATCTTA AAAAGTGATT AATAAATCAT ACTCGTGGGT TGAATTGGAC 361 CCTTTTAAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 35924 to 40426): Exon 1 36018 36062 ( 45 n); cDNA 1 46 ( 46 n); score: 0.856 Intron 1 36063 37092 (1030 n); Pd: 0.828 (s: 0.86), Pa: 0.999 (s: 0.92) Exon 2 37093 37182 ( 90 n); cDNA 47 136 ( 90 n); score: 0.933 Intron 2 37183 37266 ( 84 n); Pd: 0.994 (s: 0.94), Pa: 0.998 (s: 0.72) Exon 3 37267 37370 ( 104 n); cDNA 137 238 ( 102 n); score: 0.688 Intron 3 37371 38791 (1421 n); Pd: 0.352 (s: 0.64), Pa: 0.498 (s: 0) Exon 4 38792 38800 ( 9 n); cDNA 239 246 ( 8 n); score: 0.778 PPA cDNA 367 386 MATCH C09HBa0099P03.1-2+ SGN-E223606- 0.802 248 0.642 C PGS_C09HBa0099P03.1-2+_SGN-E223606- (36018 36062,37093 37182,37267 37370,38792 38800) Alignment (genomic DNA sequence = upper lines): GTATCTTGCA AGCCTAAGTG TGTAAGGCAA CTAAAGGA-T TATCAGGTGA TTCCCACCAT 36076 ||| ||||| |||||||||| ||||||||| |||||||| |||||| GTAAGTTGCA AGCCTAAGTG TGTAAGGCAG CTAAAGGAGG TATCAG.... .......... 46 AACAAAACAG CCTTTCAGTT ATATCAAAGG GATTTTCTTG TTCTTATATA ATTGTTATTG 36136 .......... .......... .......... .......... .......... .......... 46 GGTGAGCTGT AACTTGGACT TGATTGTTTG CGGTGGTGGA AGGCTAATTT TTATTATTGT 36196 .......... .......... .......... .......... .......... .......... 46 TAACATTATC CTGTACGGTC TCCACAAGAA CTCAGAGTGA CACAAAAATG TCTTGGCAAT 36256 .......... .......... .......... .......... .......... .......... 46 GTCATGTTAG ACCTGAAAAT TGTAAATTTG GAAAACATCA AGTACTATGG CCGACATATG 36316 .......... .......... .......... .......... .......... .......... 46 ACCTAACATA GTATGTATCA CTTGAACTTT CAGCTACTCT AATTACCAAA TCAACTGATA 36376 .......... .......... .......... .......... .......... .......... 46 TAGTAAGCCA GGAGAATTTT CTTGTTATGT CACTCTAATG GGATGAACCA ACATGTGACG 36436 .......... .......... .......... .......... .......... .......... 46 AAGAGACTTA ATCTGTAACT GCTTGGTCTT TCCAAGTAGC CAAAAAGGCA TGTTTATGGG 36496 .......... .......... .......... .......... .......... .......... 46 CCTCCAAGTA CACCCACCGA CCTCCTCTCA TATTGGCTCT CCAGATTCAA CTGGTCAGCA 36556 .......... .......... .......... .......... .......... .......... 46 GAATGCTAGT ATTTCTATGA TCTTTTTTGT TTCCTCTGCT CATTTTTCTG TATCATATGT 36616 .......... .......... .......... .......... .......... .......... 46 GTCTATCGGG TCCATTGTTC TTTCTATTGC CAACAATTTG CTGTAACAAT TTTTTATGAA 36676 .......... .......... .......... .......... .......... .......... 46 GAACACAGTG CTGTAAGGTT TTGATTATCA AAGACTCAGA GTTTTAATTT CGATCCCGTT 36736 .......... .......... .......... .......... .......... .......... 46 AAACCTTTCC GAGTTAGTTT TGGCTTTCAA CTTCTTGTTA TTCATCTACT CCCTCTGCCT 36796 .......... .......... .......... .......... .......... .......... 46 AAATCTTTTA ATCAACTTAA TGGTTTGTGC AAAGGATGTG CTTTGGACAT GGGGAATCTG 36856 .......... .......... .......... .......... .......... .......... 46 GGATTTTTGT GTGTTATGCT TGAAGGATGA TATCTAATTG ATTTGTGACA ACTACCACCT 36916 .......... .......... .......... .......... .......... .......... 46 TAGATAACTG TACAGTAGCA TTCGTTTGAT CTTCAGAACA ATTGCATTTA ACTGTTCTGT 36976 .......... .......... .......... .......... .......... .......... 46 GCACTTCCTG AACATTTATG TCTCGTTCAT TTGTTCTGAA TTTGTGCAAA TGTATTTAAA 37036 .......... .......... .......... .......... .......... .......... 46 ATTTGTACCG ACTTTCATAC TTTGTGGCTC TTATTTGGGT ATTTTGCATC CTACAGGCAT 37096 |||| .......... .......... .......... .......... .......... ......GCAT 50 GTACTAGAAG GATAGAAGGT GATGAATCAG GGAGCAAGCA TTGCACTGGA CAGTATTTTG 37156 |||||| ||| |||||||||| |||||||||| || ||| || |||||||||| |||||||||| GTACTAAAAG GATAGAAGGT GATGAATCAG GGCACAAACA TTGCACTGGA CAGTATTTTG 110 ATTATTGGCA ATGCATTGAC AAATGTGTAA GCTCTATTTC TCTATTCTCC GTTGTTGCTC 37216 |||||||||| ||||| ||| |||||| ATTATTGGCA CTGCATCGAC AAATGT.... .......... .......... .......... 136 TATTTAGCAT TTCGTTTTGT TTCTAAACTT TTTATGGAAT TGTTACACAG GTTGCCCCAA 37276 ||| | | | .......... .......... .......... .......... .......... GTTCCTGCGA 146 AGCTATTTGA AAAACTCAAG TAACATGGAG ATAAG-TGTT CATCCATTAC GATTTTATCT 37335 || | ||||| | |||||| ||||| ||| ||||| |||| |||| || | | ||||||| AGTTGTTTGA CCATCTCAAG TAACAAGGAT ATAAGTTGTT GATCCCTTGC -AATTTATCT 205 TGCTTTTTCA TTGTTGAAGC CTGTGCTACA GACTTGCAAT CCCTTCAATC AACTTAGTTG 37395 | |||||| |||||||| | || | | | T-CTTTTTGG TTGTTGAA-C AAGTCATTAC CATAT..... .......... .......... 238 CCGCATGGAA AATTTTGTAC TATGCACATT ATTAAGAAGT GATTAATAAA GGATACTTAT 37455 .......... .......... .......... .......... .......... .......... 238 GGGTTAAATT TTGTGGACAC TTTTATTTGG TCAGATGATT CAAAATCCGG AGGACATTAT 37515 .......... .......... .......... .......... .......... .......... 238 TCCCAGATTT TTGTTCTCTC TTGCGTTGTT ATATGAGCTC CCAGTTACCT AATTTCTTTA 37575 .......... .......... .......... .......... .......... .......... 238 TGGGAGGAAA TATCATAAAT CAGTGATTTA TATAAGCCCA TTTCTTCTTA GTTTTGGTTG 37635 .......... .......... .......... .......... .......... .......... 238 TTTTGTGGTT TATAGTCCTG AATTAGTGTG GCATTAAAAT TTGCATGCAA CCCTTTAGGT 37695 .......... .......... .......... .......... .......... .......... 238 CGAGAATATT GCTAAATGAG TCATAGAGTA GACAAAAGTG CAAGGTACAG TCAACTGCTA 37755 .......... .......... .......... .......... .......... .......... 238 GAGTGATGTT CCTCACTGTA TTTGTGGGTT TTCTTCTGGG CTGTCTTCTT ATTTAGCCGA 37815 .......... .......... .......... .......... .......... .......... 238 TGGAGAGGTA ATAGGTATCC TGTGAAATTG TTGATGGAGT GTTCACCTAA CACTATAACA 37875 .......... .......... .......... .......... .......... .......... 238 TGTTAATCTA TGCGTAATCA AACCATGTGG CAACTTTATC ATAAAAACAA GACAAGTAAA 37935 .......... .......... .......... .......... .......... .......... 238 TTGAAATGGA TGGAGTAATT TTTATGGAAT AATTAGGTTT TTGTTTTAGT TGTTGACTTG 37995 .......... .......... .......... .......... .......... .......... 238 TGATGACAAA TCAAAGGTTT CTTATCTTCT TTAGGTGCTT TGTTTTTAAT CTGTGGATAT 38055 .......... .......... .......... .......... .......... .......... 238 CTTATTGATT TTTTAGAGCT TCCTGATTCT GTATGCTTAT TCACTTGTTT GTCAAGCAGG 38115 .......... .......... .......... .......... .......... .......... 238 ATGAGAAGTA TATATGTTCT CTATATAATG AAATGACTAA AGATTTTTTT TTGAATTGAA 38175 .......... .......... .......... .......... .......... .......... 238 AATTACAGAG AAAGAGTCTG TTTTTAAGAA ATATAGTTTT ACTGTACAAA ATAGATATGG 38235 .......... .......... .......... .......... .......... .......... 238 GAGTACATAT TTTGAATACA GGGAATACGA TTCTTTTTGG TTTTCACCGT CCTCCGAAAA 38295 .......... .......... .......... .......... .......... .......... 238 TAATTATAAC TTATAAATAT ACATAAATTA TACACTAATG ATGTATAATT TTGCGTATAT 38355 .......... .......... .......... .......... .......... .......... 238 TATACATCCG TAGATAATTA TTTTGGACGG TGGCGATACA GTGTGAAAAT CCCCTTTTAA 38415 .......... .......... .......... .......... .......... .......... 238 TGTTTAAGAA TGGGTCCAAA ACCCCAAGAA CATGATAGTT CTAATGGGAT CTTCCATGTT 38475 .......... .......... .......... .......... .......... .......... 238 TGAACTCTTT CTTCTTTGAT TTTGATTTTC TTTGGAATTT TGTTTTGATT TTGAGAGCTT 38535 .......... .......... .......... .......... .......... .......... 238 TTCTCTGGTT GTTCTCTTTG ATTTGTGAAT CAAAGATTTA TCATCTTCAG AGAAATGGTG 38595 .......... .......... .......... .......... .......... .......... 238 AGGCTTCATC CGTGTGTTGA AATGTTTTAC TTAAGATATT GAAGCTTCTT ATAAATTGTG 38655 .......... .......... .......... .......... .......... .......... 238 GACAAAATAC AAACAAATTT ATAGAAAAAA ACTTCATGAA ATGAGAAAAG CATTAGAGAT 38715 .......... .......... .......... .......... .......... .......... 238 GGAATATATG ATAGATATCT CCATTTATTA AGCATATATT CCTTATGTCT GTTGATGTGG 38775 .......... .......... .......... .......... .......... .......... 238 ATGGTGTATA TATCAGTATT TGCTC 38800 || | | ||| .......... ......TA-T TCCTC 246 hqPGS_C09HBa0099P03.1-2+_SGN-E223606- (36018 36062,37093 37182,37267 37370) ******************************************************************************** EST sequence 92 +strand 576 n (File: SGN-E308359+) 1 GAAGAACACA TGAGGCGCCC TTTCCTCTCA CTCAATCCTT TTGCTCAAGT ACCAGCATTT 61 GAAGATGGAG ACTTGAAGCT CTTTGAATCA AGGGCAATCA CTCAATACAT TGCTCAGGTT 121 TATGCTAGCA ATGGCATTCA ACTAATACTC CAAGATCCAA TGAAAATGGC CATTATGTCA 181 GTATGGATGG AAGTAGAAGG CCAAAAATTT GAACCACCAG CTTCAAAATT AACATGGGAG 241 CTAGTCATAA AACCAATGAT TGGCTTGGGC AGCACCGATG ATGTTATTGT GAAGGAAAGT 301 GAAGAACAAT TGTCTAAGGT TCTTGACATC TACGAAACTC GATTGACAGA GTCAAAATAC 361 TTGGGTGGCG ACTCCTTTAC ACTTGTTGAT TTGCATCATA TACCAAATAT ATACCATCTG 421 ATGAATACAA AAGCTAAGGC ACTGTTTGAT TCGCGCCCTC GTGTGAGTGT ATGGTGTGCT 481 GATATATTGG CTAGGCCAGC TTGGGTGAAG GGGTTGGAGA ATATGCAAAA ATGAAAAAAA 541 GTCGTGAATT AATGGATGAT CATAATTCAT ATATAT Predicted gene structure (within gDNA segment 42244 to 39217): Exon 1 41911 41876 ( 36 n); cDNA 1 36 ( 36 n); score: 0.944 Intron 1 41875 41285 ( 591 n); Pd: 1.000 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 41284 41236 ( 49 n); cDNA 37 85 ( 49 n); score: 1.000 Intron 2 41235 40318 ( 918 n); Pd: 0.954 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 40317 39827 ( 491 n); cDNA 86 576 ( 491 n); score: 0.996 MATCH C09HBa0099P03.1-2- SGN-E308359+ 0.996 576 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E308359+ (41911 41876,41284 41236,40317 39827) Alignment (genomic DNA sequence = upper lines): GAAGAACACA AGAGGCACCC TTTCCTCTCA CTCAATGTAA GCATAAATAA TTACTCCCTC 41852 |||||||||| ||||| ||| |||||||||| |||||| GAAGAACACA TGAGGCGCCC TTTCCTCTCA CTCAAT.... .......... .......... 36 TGTACAGCTA CATAAATATT TAAGAATTGT TTGACCATAA GTTTCAAAAG TTCTTTTCTT 41792 .......... .......... .......... .......... .......... .......... 36 TAAACATGGT GTCAAGTCAA ATGGTGTCAA ATAAAATGGG ACGGTTGAAG TACATTATTA 41732 .......... .......... .......... .......... .......... .......... 36 GCATGTTTGA TCAAGTTTTG GAGAAGCTAA AAGTATTTCT TTTTAAATGT TTATTTTAGA 41672 .......... .......... .......... .......... .......... .......... 36 AATTTGAGAT GTTCAGTGTT TTTTAGTAGC AGCATAAACT GAACTAAAAA CACTTTTTTG 41612 .......... .......... .......... .......... .......... .......... 36 AAACTTTGGT CAAACACAAA TGTTGCAAAA ACATTTGTCA TATTGATGGC AAATACAAAT 41552 .......... .......... .......... .......... .......... .......... 36 TGTCATCGTC CAAAATACTC TTTAAATACA ACACTTTTTG AAATTAATAA TTTCTAAAAT 41492 .......... .......... .......... .......... .......... .......... 36 GCTAAACAAA CTATAAATTT ATTTGGTAGT GAATGTTACT AGTGAAAAAA AATAAATCTA 41432 .......... .......... .......... .......... .......... .......... 36 TTTGGTAGTG ATTTCTACAC AGATTTATAT TTGTCAAAAA TATTTTAATT GGTTCACTTG 41372 .......... .......... .......... .......... .......... .......... 36 TACTTGCTAT CAATCCATTT TTTTCCTTTA ATTTAAAATC ATGAATTCAT ATAGTATATT 41312 .......... .......... .......... .......... .......... .......... 36 AAAATGATAT TTTCTCAATG GGTGCAGCCT TTTGCTCAAG TACCAGCATT TGAAGATGGA 41252 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......CCT TTTGCTCAAG TACCAGCATT TGAAGATGGA 69 GACTTGAAGC TCTTTGGTAA AGTGTTTTAG CTAATCTTAC AATTTGTAGT ATATGTCTGC 41192 |||||||||| |||||| GACTTGAAGC TCTTTG.... .......... .......... .......... .......... 85 ACCAAGGTGT TAAATTTGAA AAGATTTAAG TTACATATAC ATAAACATTA TTAAATATTT 41132 .......... .......... .......... .......... .......... .......... 85 TTTATACTAT CAATGTAATC TATCATGTTA TAGTAGGTTA CTCATTATAT TTACTAATTA 41072 .......... .......... .......... .......... .......... .......... 85 TTAGTGCTTA TAATAGAATA TTTAAAATAT AACACAAAAA AATGCTCTTT AACCTTACCT 41012 .......... .......... .......... .......... .......... .......... 85 CATCTGACAT ATATGCTCAC CAACTTAGGA TTTGCACGAG TGAACAATTA AACTTGTATA 40952 .......... .......... .......... .......... .......... .......... 85 TAATTGAATA AGTGGACACA CATCCTACAT GACAATTTGC AATCTTACAT GGTGTCCTAC 40892 .......... .......... .......... .......... .......... .......... 85 ATGTATTAAG TCATTTTAGA CATGCGTGTC TACGTGTTCA ACTTTATATA AATTTAAATG 40832 .......... .......... .......... .......... .......... .......... 85 TCTACTTATG TACATATAAA ATTGGACAGA TGTCAGCTAA GTTCAAATTA AAAAACTATT 40772 .......... .......... .......... .......... .......... .......... 85 TTTATGTATT GTGCCAAATT TTTTTACATT ACCATACAAG TTGGATCAGA GTTAGTAATA 40712 .......... .......... .......... .......... .......... .......... 85 CAGGAGTTAA ACTAAATCCT CTCCGCCGAA TAATTATATT TATGCAAATA GAGCAAGACC 40652 .......... .......... .......... .......... .......... .......... 85 AACTGTTATA TCCAACCTTT TCCCCCTTGA CATAAAAGGA AGATTTTACT AGTGATAAAG 40592 .......... .......... .......... .......... .......... .......... 85 GGGTTCATAA GTTCAATCTT AACTTTGACA TCCTAATATA TATTTTTGAA CCCTTTTTAT 40532 .......... .......... .......... .......... .......... .......... 85 ATATATAAAG AAGAATTAAC TCAACGAGTC ACCACCCAAT CGTTCAACAC ATGTATAATT 40472 .......... .......... .......... .......... .......... .......... 85 TATGTTTATC AGTTGGGAAA TGTAAACAAG TGAATCCATA CAGTTAATTA TGTAAAGATT 40412 .......... .......... .......... .......... .......... .......... 85 CCTTATATGA ATTCTTGTTT CTACCATTGC TGATAAGTGA CCTTTTCTTT AAAACTTATC 40352 .......... .......... .......... .......... .......... .......... 85 AATTTGAATG ACAATATGTG CACTTGTAAT GCAGAATCAA GGGCAATCAC TCAATACATT 40292 |||||| |||||||||| |||||||||| .......... .......... .......... ....AATCAA GGGCAATCAC TCAATACATT 111 GCTCAGGTTT ATGCTAGCAA TGGCATTCAA CTAATACTCC AAGATCCAAT GAAAATGGCC 40232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAGGTTT ATGCTAGCAA TGGCATTCAA CTAATACTCC AAGATCCAAT GAAAATGGCC 171 ATTATGTCAG TATGGATGGA AGTAGAAGGC CAAAAATTTG AACCACCAGC TTCAAAATTA 40172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGTCAG TATGGATGGA AGTAGAAGGC CAAAAATTTG AACCACCAGC TTCAAAATTA 231 ACATGGGAGC TAGTCATAAA ACCAATGATT GGCTTGGGCA GTACCGATGA TGTTATTGTG 40112 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ACATGGGAGC TAGTCATAAA ACCAATGATT GGCTTGGGCA GCACCGATGA TGTTATTGTG 291 AAGGAAAGTG AAGAACAATT GTCTAAGGTT CTTGACATCT ACGAAACTCG ATTGACAGAG 40052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAAGTG AAGAACAATT GTCTAAGGTT CTTGACATCT ACGAAACTCG ATTGACAGAG 351 TCAAAATACT TGGGTGGCGA CTCCTTTACA CTTGTTGATT TGCATCATAT ACCAAATATA 39992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAATACT TGGGTGGCGA CTCCTTTACA CTTGTTGATT TGCATCATAT ACCAAATATA 411 TACCATCTGA TGAATACAAA AGCTAAGGCA CTGTTTGATT CGCGCCCTCG TGTGAGTGTA 39932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCATCTGA TGAATACAAA AGCTAAGGCA CTGTTTGATT CGCGCCCTCG TGTGAGTGTA 471 TGGTGTGCTG ATATATTGGC TAGGCCAGCT TGGGTGAAGG GGTTGGAGAA GATGCAAAAA 39872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGGTGTGCTG ATATATTGGC TAGGCCAGCT TGGGTGAAGG GGTTGGAGAA TATGCAAAAA 531 TGAAAAAAAG TCGTGAATTA ATGGATGATC ATAATTCATA TATAT 39827 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGAAAAAAAG TCGTGAATTA ATGGATGATC ATAATTCATA TATAT 576 hqPGS_C09HBa0099P03.1-2-_SGN-E308359+ (41911 41876,41284 41236,40317 39827) ******************************************************************************** EST sequence 93 +strand 515 n (File: SGN-E309720+) 1 TCTATCATAA TCCTAATTTA TTATTCTTGA AATAATGGCC ATCAAAGTCC ATGGTATCCC 61 CTTGTCAACT GCAACCATGA GAGTTATTTC TTGCCTTATT GAGAAGGATT TGGATTTTGA 121 GTTTGTCTTT GTTGATATGG CCAAAGAAGA ACACAAGAGG CCCCCTTTCC TCTCACCTCA 181 ATCCTTTTGC TCAAGTCCCA GCATTTGAAG ATGGAGACTT GAAGCTCTTT GAATCAAGGG 241 CCAATCACTC AATACCATTG CTCAGGTTTA TGCTAGCAAT GGCATTCAAC TAATACTCCA 301 AGATCCAATG AAAATGGCCA TTATGTCAGT ATGGATGGAA GTAGAAGGCC AAAAATTTGA 361 ACCCCCAGCT TCAAAATTAA CCATGGGAGC CTAGTCATAA AACCAATGAT TGGCTTGGGC 421 AGTACCGATG ATGTTATTGT GAAGGAAAGT GAAGAACAAT TGTCTAAGGT TCTTGACATC 481 TACGAAACTC GATTGACAGA GTCAAAATAC TTGGG Predicted gene structure (within gDNA segment 42656 to 39428): Exon 1 42056 41876 ( 181 n); cDNA 1 182 ( 182 n); score: 0.975 Intron 1 41875 41285 ( 591 n); Pd: 1.000 (s: 0.93), Pa: 1.000 (s: 0.98) Exon 2 41284 41236 ( 49 n); cDNA 183 231 ( 49 n); score: 0.980 Intron 2 41235 40318 ( 918 n); Pd: 0.954 (s: 0.98), Pa: 0.996 (s: 0.90) Exon 3 40317 40038 ( 280 n); cDNA 232 515 ( 284 n); score: 0.961 MATCH C09HBa0099P03.1-2- SGN-E309720+ 0.966 510 0.990 C PGS_C09HBa0099P03.1-2-_SGN-E309720+ (42056 41876,41284 41236,40317 40038) Alignment (genomic DNA sequence = upper lines): TCTATCATAA TCCTAATTTA TTATTCTTGA AATAATGGCA ATCAAAGTCC ATGGTATCCC 41997 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCTATCATAA TCCTAATTTA TTATTCTTGA AATAATGGCC ATCAAAGTCC ATGGTATCCC 60 CTTGTCAACT GCAACCATGA GAGTTATTTC TTGCCTTATT GAGAAGGATT TGGATTTTGA 41937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTCAACT GCAACCATGA GAGTTATTTC TTGCCTTATT GAGAAGGATT TGGATTTTGA 120 GTTTGTCTTT GTTGATATGG CCAAAGAAGA ACACAAGAGG CACCCTTTCC TCTCA-CTCA 41878 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||| |||| GTTTGTCTTT GTTGATATGG CCAAAGAAGA ACACAAGAGG CCCCCTTTCC TCTCACCTCA 180 ATGTAAGCAT AAATAATTAC TCCCTCTGTA CAGCTACATA AATATTTAAG AATTGTTTGA 41818 || AT........ .......... .......... .......... .......... .......... 182 CCATAAGTTT CAAAAGTTCT TTTCTTTAAA CATGGTGTCA AGTCAAATGG TGTCAAATAA 41758 .......... .......... .......... .......... .......... .......... 182 AATGGGACGG TTGAAGTACA TTATTAGCAT GTTTGATCAA GTTTTGGAGA AGCTAAAAGT 41698 .......... .......... .......... .......... .......... .......... 182 ATTTCTTTTT AAATGTTTAT TTTAGAAATT TGAGATGTTC AGTGTTTTTT AGTAGCAGCA 41638 .......... .......... .......... .......... .......... .......... 182 TAAACTGAAC TAAAAACACT TTTTTGAAAC TTTGGTCAAA CACAAATGTT GCAAAAACAT 41578 .......... .......... .......... .......... .......... .......... 182 TTGTCATATT GATGGCAAAT ACAAATTGTC ATCGTCCAAA ATACTCTTTA AATACAACAC 41518 .......... .......... .......... .......... .......... .......... 182 TTTTTGAAAT TAATAATTTC TAAAATGCTA AACAAACTAT AAATTTATTT GGTAGTGAAT 41458 .......... .......... .......... .......... .......... .......... 182 GTTACTAGTG AAAAAAAATA AATCTATTTG GTAGTGATTT CTACACAGAT TTATATTTGT 41398 .......... .......... .......... .......... .......... .......... 182 CAAAAATATT TTAATTGGTT CACTTGTACT TGCTATCAAT CCATTTTTTT CCTTTAATTT 41338 .......... .......... .......... .......... .......... .......... 182 AAAATCATGA ATTCATATAG TATATTAAAA TGATATTTTC TCAATGGGTG CAGCCTTTTG 41278 ||||||| .......... .......... .......... .......... .......... ...CCTTTTG 189 CTCAAGTACC AGCATTTGAA GATGGAGACT TGAAGCTCTT TGGTAAAGTG TTTTAGCTAA 41218 ||||||| || |||||||||| |||||||||| |||||||||| || CTCAAGTCCC AGCATTTGAA GATGGAGACT TGAAGCTCTT TG........ .......... 231 TCTTACAATT TGTAGTATAT GTCTGCACCA AGGTGTTAAA TTTGAAAAGA TTTAAGTTAC 41158 .......... .......... .......... .......... .......... .......... 231 ATATACATAA ACATTATTAA ATATTTTTTA TACTATCAAT GTAATCTATC ATGTTATAGT 41098 .......... .......... .......... .......... .......... .......... 231 AGGTTACTCA TTATATTTAC TAATTATTAG TGCTTATAAT AGAATATTTA AAATATAACA 41038 .......... .......... .......... .......... .......... .......... 231 CAAAAAAATG CTCTTTAACC TTACCTCATC TGACATATAT GCTCACCAAC TTAGGATTTG 40978 .......... .......... .......... .......... .......... .......... 231 CACGAGTGAA CAATTAAACT TGTATATAAT TGAATAAGTG GACACACATC CTACATGACA 40918 .......... .......... .......... .......... .......... .......... 231 ATTTGCAATC TTACATGGTG TCCTACATGT ATTAAGTCAT TTTAGACATG CGTGTCTACG 40858 .......... .......... .......... .......... .......... .......... 231 TGTTCAACTT TATATAAATT TAAATGTCTA CTTATGTACA TATAAAATTG GACAGATGTC 40798 .......... .......... .......... .......... .......... .......... 231 AGCTAAGTTC AAATTAAAAA ACTATTTTTA TGTATTGTGC CAAATTTTTT TACATTACCA 40738 .......... .......... .......... .......... .......... .......... 231 TACAAGTTGG ATCAGAGTTA GTAATACAGG AGTTAAACTA AATCCTCTCC GCCGAATAAT 40678 .......... .......... .......... .......... .......... .......... 231 TATATTTATG CAAATAGAGC AAGACCAACT GTTATATCCA ACCTTTTCCC CCTTGACATA 40618 .......... .......... .......... .......... .......... .......... 231 AAAGGAAGAT TTTACTAGTG ATAAAGGGGT TCATAAGTTC AATCTTAACT TTGACATCCT 40558 .......... .......... .......... .......... .......... .......... 231 AATATATATT TTTGAACCCT TTTTATATAT ATAAAGAAGA ATTAACTCAA CGAGTCACCA 40498 .......... .......... .......... .......... .......... .......... 231 CCCAATCGTT CAACACATGT ATAATTTATG TTTATCAGTT GGGAAATGTA AACAAGTGAA 40438 .......... .......... .......... .......... .......... .......... 231 TCCATACAGT TAATTATGTA AAGATTCCTT ATATGAATTC TTGTTTCTAC CATTGCTGAT 40378 .......... .......... .......... .......... .......... .......... 231 AAGTGACCTT TTCTTTAAAA CTTATCAATT TGAATGACAA TATGTGCACT TGTAATGCAG 40318 .......... .......... .......... .......... .......... .......... 231 AATCAAGGG- CAATCACTCA ATA-CATTGC TCAGGTTTAT GCTAGCAATG GCATTCAACT 40260 ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AATCAAGGGC CAATCACTCA ATACCATTGC TCAGGTTTAT GCTAGCAATG GCATTCAACT 291 AATACTCCAA GATCCAATGA AAATGGCCAT TATGTCAGTA TGGATGGAAG TAGAAGGCCA 40200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATACTCCAA GATCCAATGA AAATGGCCAT TATGTCAGTA TGGATGGAAG TAGAAGGCCA 351 AAAATTTGAA CCACCAGCTT CAAAATTAA- CATGGGAG-C TAGTCATAAA ACCAATGATT 40142 |||||||||| || ||||||| ||||||||| |||||||| | |||||||||| |||||||||| AAAATTTGAA CCCCCAGCTT CAAAATTAAC CATGGGAGCC TAGTCATAAA ACCAATGATT 411 GGCTTGGGCA GTACCGATGA TGTTATTGTG AAGGAAAGTG AAGAACAATT GTCTAAGGTT 40082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTGGGCA GTACCGATGA TGTTATTGTG AAGGAAAGTG AAGAACAATT GTCTAAGGTT 471 CTTGACATCT ACGAAACTCG ATTGACAGAG TCAAAATACT TGGG 40038 |||||||||| |||||||||| |||||||||| |||||||||| |||| CTTGACATCT ACGAAACTCG ATTGACAGAG TCAAAATACT TGGG 515 hqPGS_C09HBa0099P03.1-2-_SGN-E309720+ (42056 41876,41284 41236,40317 40038) ******************************************************************************** EST sequence 12 -strand 529 n (File: SGN-E203073-) 1 TAGTCATAAA ACCAATGATT GGCTTGGGCA GTACCGATGA TGTTATTGTG AAGGAAAGTG 61 AAGAACAATT GTCTAAGGTT CTTGACATCT ACGAAACTCG ATTGACAGAG TCAAAATACT 121 TGGGTGGCGA CTCCTTTACA CTTGTTGATT TGCATCATAT ACCAAATATA TACCATCTGA 181 TGAATACAAA AGCTAAGGCA CTGTTTGATT CGCGCCCTCG TGTGAGTGTA TGGTGTGCTG 241 ATATATTGGC TAGGCCAGCT TGGGTGAAGG GGTTGGAGAA GATGCAAAAA TGAAAAAAAG 301 TCGTGAATTA ATGGATGATC ATAATTCATA TATATGTTTT TGTTTTGAAG CATTTGTGTC 361 TTAATATGTT GTGTTTCTTG TCTGAAGATG TTTGTCTTGC AATACAATAA ACAGTGATCT 421 ATATCTATGT GATTTTACTA ATTGTACTGA TGTAAAATAT GCTATGTTCC GGTCATTTAT 481 AAAATAATTG CGCGCTATAT TTTTGTGAAA AAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 40771 to 38844): Exon 1 40161 39655 ( 507 n); cDNA 1 507 ( 507 n); score: 1.000 PPA cDNA 508 529 MATCH C09HBa0099P03.1-2- SGN-E203073- 1.000 507 0.958 C PGS_C09HBa0099P03.1-2-_SGN-E203073- (40161 39655) Alignment (genomic DNA sequence = upper lines): TAGTCATAAA ACCAATGATT GGCTTGGGCA GTACCGATGA TGTTATTGTG AAGGAAAGTG 40102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTCATAAA ACCAATGATT GGCTTGGGCA GTACCGATGA TGTTATTGTG AAGGAAAGTG 60 AAGAACAATT GTCTAAGGTT CTTGACATCT ACGAAACTCG ATTGACAGAG TCAAAATACT 40042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAACAATT GTCTAAGGTT CTTGACATCT ACGAAACTCG ATTGACAGAG TCAAAATACT 120 TGGGTGGCGA CTCCTTTACA CTTGTTGATT TGCATCATAT ACCAAATATA TACCATCTGA 39982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTGGCGA CTCCTTTACA CTTGTTGATT TGCATCATAT ACCAAATATA TACCATCTGA 180 TGAATACAAA AGCTAAGGCA CTGTTTGATT CGCGCCCTCG TGTGAGTGTA TGGTGTGCTG 39922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATACAAA AGCTAAGGCA CTGTTTGATT CGCGCCCTCG TGTGAGTGTA TGGTGTGCTG 240 ATATATTGGC TAGGCCAGCT TGGGTGAAGG GGTTGGAGAA GATGCAAAAA TGAAAAAAAG 39862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATTGGC TAGGCCAGCT TGGGTGAAGG GGTTGGAGAA GATGCAAAAA TGAAAAAAAG 300 TCGTGAATTA ATGGATGATC ATAATTCATA TATATGTTTT TGTTTTGAAG CATTTGTGTC 39802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGAATTA ATGGATGATC ATAATTCATA TATATGTTTT TGTTTTGAAG CATTTGTGTC 360 TTAATATGTT GTGTTTCTTG TCTGAAGATG TTTGTCTTGC AATACAATAA ACAGTGATCT 39742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATATGTT GTGTTTCTTG TCTGAAGATG TTTGTCTTGC AATACAATAA ACAGTGATCT 420 ATATCTATGT GATTTTACTA ATTGTACTGA TGTAAAATAT GCTATGTTCC GGTCATTTAT 39682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTATGT GATTTTACTA ATTGTACTGA TGTAAAATAT GCTATGTTCC GGTCATTTAT 480 AAAATAATTG CGCGCTATAT TTTTGTG 39655 |||||||||| |||||||||| ||||||| AAAATAATTG CGCGCTATAT TTTTGTG 507 hqPGS_C09HBa0099P03.1-2-_SGN-E203073- (40161 39655) ******************************************************************************** EST sequence 69 +strand 612 n (File: SGN-E250145+) 1 AAAGGTTTGC TTAGGATTCA AGACTTTTTG GATATATTGA TTTTTTTAAG AATGATATCA 61 AGAAAATTTT ACCCTATATA TACCCCTCCA TATAACTTCA TTTCATCAAC TTGGAGCAAT 121 CTATCATAAT CCTAATTTAT TATTCTTGAA ATAATGGCAA TCAAAGTCCA TGGTATCCCC 181 TTGTCAACTG CAACCATGAG AGTTATTTCT TGCCTTATTG AGAAGGATTT GGATTTTGAG 241 TTTGTCTTTG TTGATATGGC CAAAGAAGAA CACAAGAGGC ACCCTTTCCT CTCACTCAAT 301 GTAAGCATAA ATAATTACTC CCTCTGTACA GCTACATAAA TATTTAAGAA TTGTTTGACC 361 ATAAGTTTCA AAAGTTCTTT TCTTTAAACA TGGTGTCAAG TCAAATGGTG TCAAATAAAA 421 TGGGACGGTT GAAGTACATT ATTAGCATGT TTGATCAAGT TTTGGAGAAG CTAAAAGTAT 481 TTCTTTTTAA ATGTTTATTT TAGAAATTTG AGATGTTCAG TGTTTTTTAG TAGCAGCATA 541 AACTGAACTA AAAACACTTT TTTGAAACTT TGGTCAAACA CAAATGTTGC AAAAACATTT 601 GTCATATTGA TG Predicted gene structure (within gDNA segment 42775 to 40954): Exon 1 42175 41564 ( 612 n); cDNA 1 612 ( 612 n); score: 1.000 MATCH C09HBa0099P03.1-2- SGN-E250145+ 1.000 612 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E250145+ (42175 41564) Alignment (genomic DNA sequence = upper lines): AAAGGTTTGC TTAGGATTCA AGACTTTTTG GATATATTGA TTTTTTTAAG AATGATATCA 42116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTTTGC TTAGGATTCA AGACTTTTTG GATATATTGA TTTTTTTAAG AATGATATCA 60 AGAAAATTTT ACCCTATATA TACCCCTCCA TATAACTTCA TTTCATCAAC TTGGAGCAAT 42056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAATTTT ACCCTATATA TACCCCTCCA TATAACTTCA TTTCATCAAC TTGGAGCAAT 120 CTATCATAAT CCTAATTTAT TATTCTTGAA ATAATGGCAA TCAAAGTCCA TGGTATCCCC 41996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCATAAT CCTAATTTAT TATTCTTGAA ATAATGGCAA TCAAAGTCCA TGGTATCCCC 180 TTGTCAACTG CAACCATGAG AGTTATTTCT TGCCTTATTG AGAAGGATTT GGATTTTGAG 41936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCAACTG CAACCATGAG AGTTATTTCT TGCCTTATTG AGAAGGATTT GGATTTTGAG 240 TTTGTCTTTG TTGATATGGC CAAAGAAGAA CACAAGAGGC ACCCTTTCCT CTCACTCAAT 41876 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTCTTTG TTGATATGGC CAAAGAAGAA CACAAGAGGC ACCCTTTCCT CTCACTCAAT 300 GTAAGCATAA ATAATTACTC CCTCTGTACA GCTACATAAA TATTTAAGAA TTGTTTGACC 41816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGCATAA ATAATTACTC CCTCTGTACA GCTACATAAA TATTTAAGAA TTGTTTGACC 360 ATAAGTTTCA AAAGTTCTTT TCTTTAAACA TGGTGTCAAG TCAAATGGTG TCAAATAAAA 41756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGTTTCA AAAGTTCTTT TCTTTAAACA TGGTGTCAAG TCAAATGGTG TCAAATAAAA 420 TGGGACGGTT GAAGTACATT ATTAGCATGT TTGATCAAGT TTTGGAGAAG CTAAAAGTAT 41696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGACGGTT GAAGTACATT ATTAGCATGT TTGATCAAGT TTTGGAGAAG CTAAAAGTAT 480 TTCTTTTTAA ATGTTTATTT TAGAAATTTG AGATGTTCAG TGTTTTTTAG TAGCAGCATA 41636 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTTTAA ATGTTTATTT TAGAAATTTG AGATGTTCAG TGTTTTTTAG TAGCAGCATA 540 AACTGAACTA AAAACACTTT TTTGAAACTT TGGTCAAACA CAAATGTTGC AAAAACATTT 41576 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGAACTA AAAACACTTT TTTGAAACTT TGGTCAAACA CAAATGTTGC AAAAACATTT 600 GTCATATTGA TG 41564 |||||||||| || GTCATATTGA TG 612 hqPGS_C09HBa0099P03.1-2-_SGN-E250145+ (42175 41564) ******************************************************************************** EST sequence 70 +strand 690 n (File: SGN-E262885+) 1 AATATAGAGA CACTGGATGA CTTATTGGAG AATTAAGGTG GAAATGAAGT ACAACAGTTC 61 GAGGAGAATT TGGTCTCATC TGAAGTAGCA GTTGTACATG ATCCAAATGA GCATTCCATG 121 GCTGAGGTTC TGGATCACTT TCAGCATACA AGTTCCTCAC GAGGCAATCC TAAAATGCTG 181 CAAACAAAAA TACCTGGATC ACGGTTCTTA CGGAAGAGAA ACTTATTGCT GCTTGGTGAC 241 AGAAACATGA GCAATGGCGA ACAACCTGAG GAACTAGATA GTGATCCATC TAGTGATGAG 301 GATGTAAATG AAGTTCCCCA GATTCTGAAG TCTGCTATAC CTCAGAGGAC CATGGCTGAC 361 CAATTTCATC TAGCGTTACG AGCTGTATCC ACAAATGAGA GGCTATGTAT TGCAAGGCCT 421 AAGCAATTTG GTTTATCTGG AAGGTTGCAG CACGTGATGC AATGTGAGAA GGACAGAGAT 481 ACATATTTTT TTGGAGAAGT CACAAACACA TGCTGCTTCA AGTGGTGCAG AAAGCTTCAT 541 TGATGTGAGA ATTTTGTCAA GTTCTTTGGA GGCCAAGCTG ACTGTTTGAT TTTGTGCTTT 601 ACATGGAGAT GAACAGGGTT CTGAGTGCCT GAGCAATCCT CGAGAAAGGA ACGGGACTGG 661 NTANAAAGGA GTTTACTATC ATTTTTAACT Predicted gene structure (within gDNA segment 46177 to 42600): Exon 1 45487 45311 ( 177 n); cDNA 1 177 ( 177 n); score: 0.989 Intron 1 45310 45195 ( 116 n); Pd: 0.933 (s: 1.00), Pa: 0.823 (s: 1.00) Exon 2 45194 45063 ( 132 n); cDNA 178 309 ( 132 n); score: 1.000 Intron 2 45062 44985 ( 78 n); Pd: 0.829 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 44984 44863 ( 122 n); cDNA 310 431 ( 122 n); score: 0.992 Intron 3 44862 44743 ( 120 n); Pd: 0.900 (s: 1.00), Pa: 0.982 (s: 0.98) Exon 4 44742 44651 ( 92 n); cDNA 432 524 ( 93 n); score: 0.962 Intron 4 44650 44582 ( 69 n); Pd: 0.275 (s: 0.95), Pa: 0.953 (s: 1.00) Exon 5 44581 44490 ( 92 n); cDNA 525 616 ( 92 n); score: 0.978 Intron 5 44489 43283 (1207 n); Pd: 0.987 (s: 0.96), Pa: 0.999 (s: 0.89) Exon 6 43282 43210 ( 73 n); cDNA 617 690 ( 74 n); score: 0.911 MATCH C09HBa0099P03.1-2- SGN-E262885+ 0.978 688 0.997 C PGS_C09HBa0099P03.1-2-_SGN-E262885+ (45487 45311,45194 45063,44984 44863,44742 44651,44581 44490,43282 43210) Alignment (genomic DNA sequence = upper lines): AATATAGAGT CACTGGATGA CTTATTGGAG AATTATGGTG GAAATGAAGT ACAACAGTTC 45428 ||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AATATAGAGA CACTGGATGA CTTATTGGAG AATTAAGGTG GAAATGAAGT ACAACAGTTC 60 GAGGAGAATT TGGTCTCATC TGAAGTAGCA GTTGTACATG ATCCAAATGA GCATTCCATG 45368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGAATT TGGTCTCATC TGAAGTAGCA GTTGTACATG ATCCAAATGA GCATTCCATG 120 GCTGAGGTTC TGGATCACTT TCAGCATACA AGTTCCTCAC GAGGCAATCC TAAAATGGTT 45308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GCTGAGGTTC TGGATCACTT TCAGCATACA AGTTCCTCAC GAGGCAATCC TAAAATG... 177 TGCTTTCTTC TTCTCCAGAT CTCTTTTCTT AAAGATCTCA GCAGCGCTTC CGTATTACCA 45248 .......... .......... .......... .......... .......... .......... 177 TTTTTACTAT TTCAATTATG TTTTTGAACG TAAGAATCAT GCCTATCCAA CAGCTGCAAA 45188 ||||||| .......... .......... .......... .......... .......... ...CTGCAAA 184 CAAAAATACC TGGATCACGG TTCTTACGGA AGAGAAACTT ATTGCTGCTT GGTGACAGAA 45128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAATACC TGGATCACGG TTCTTACGGA AGAGAAACTT ATTGCTGCTT GGTGACAGAA 244 ACATGAGCAA TGGCGAACAA CCTGAGGAAC TAGATAGTGA TCCATCTAGT GATGAGGATG 45068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGAGCAA TGGCGAACAA CCTGAGGAAC TAGATAGTGA TCCATCTAGT GATGAGGATG 304 TAAATGTAGT TAATCTTTTA CTGCTTAATC ATCACGATCA ATTGCCATAT GTAGTTCTCT 45008 ||||| TAAAT..... .......... .......... .......... .......... .......... 309 CAATTCCTTT CTTTTTGTTT CAGGAAGTTC CCCAGATTCT GAAGTCTGCT ATACCTCAGA 44948 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GAAGTTC CCCAGATTCT GAAGTCTGCT ATACCTCAGA 346 GGACCATGGC TGACCAATTT CATCTAGCGT TAGGAGCTGT ATCCACAAAT GAGAGGCTAT 44888 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GGACCATGGC TGACCAATTT CATCTAGCGT TACGAGCTGT ATCCACAAAT GAGAGGCTAT 406 GTATTGCAAG GCCTAAGCAA TTTGGGTGAG TTATGGAACT AGAATGTATC AGTTATGAGC 44828 |||||||||| |||||||||| ||||| GTATTGCAAG GCCTAAGCAA TTTGG..... .......... .......... .......... 431 ATATTCTGCA TGTTTTCTAT GAACAGAAAC AGAAAAATAT TCTTCAAATT TTATCTTTTC 44768 .......... .......... .......... .......... .......... .......... 431 TTACTTGTGT TGATAAGTCA TGCAGTTTAT CTGGAAGGTT GCAGCACGTG ATGCAATGTG 44708 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....TTTAT CTGGAAGGTT GCAGCACGTG ATGCAATGTG 466 AAAAGGACAG AGATACATA- TTTTTTGGAG AAGTCACAAA CACATGCTGC TTCAAGTGGT 44649 | |||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGAAGGACAG AGATACATAT TTTTTTGGAG AAGTCACAAA CACATGCTGC TTCAAGTG.. 524 AAAAGGCCAA ACTGTGTATC TCCTGTCTCT TGCTTGTTTC TGACCTTCTC CTCTGCTGTT 44589 .......... .......... .......... .......... .......... .......... 524 AATTCAGGTG CAGAAAGCTT CATTGATGTG AGAATTTTGT CAAGTTCTTT GGAGGCCAAG 44529 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTG CAGAAAGCTT CATTGATGTG AGAATTTTGT CAAGTTCTTT GGAGGCCAAG 577 CTGACTGTTT GTTTTTGTGC TTTACATGGA GATGAAGAGG TACTTGAACT AACTATTGTA 44469 |||||||||| | |||||||| |||||||||| |||||| || CTGACTGTTT GATTTTGTGC TTTACATGGA GATGAACAG. .......... .......... 616 CATTTGCTAA ACAGAAGGTT AAAAGTATGA GCATGTCTAC TTTATTGAGG ATACAACGTT 44409 .......... .......... .......... .......... .......... .......... 616 GCTTTCAACT TTTTGAAGGT CCTTCGCGTG CTTTTCTTGC TCTCACTAGT TTCTTAAGTA 44349 .......... .......... .......... .......... .......... .......... 616 AAAATTCCCA GTACTTGTTT TGATGATAGC CAATTTTTAC TTGGTGCCTG GAACATTTAC 44289 .......... .......... .......... .......... .......... .......... 616 CATTCTCATA TAAATGGACA ACTTTTAGAA ATTCAGCATG TTGCATGGCA CAAAAAGTCG 44229 .......... .......... .......... .......... .......... .......... 616 GGTAGGGTGG CCTAGGACCG TGGATACTGA GGGTAAAGAA CTTTTACTTT CCATTATAGG 44169 .......... .......... .......... .......... .......... .......... 616 TGGTAGCTTT TGGGTGAAGT GTCGTAGTTT CTTAACTTAC TATACACCAT TTCCCTCCGA 44109 .......... .......... .......... .......... .......... .......... 616 AGCACTGTAA GAAATAAGCC CTGCAAATTA AACAAACAAT GTGGTAGTTA GTTTTTTTTT 44049 .......... .......... .......... .......... .......... .......... 616 TTTTTTGAAA TGTGTAATCA GTAAGGAACT CCCAAAATTA ATTTATCACT GTGTTCAATA 43989 .......... .......... .......... .......... .......... .......... 616 ATTGCATATT TCACTTTTTT CCCCAATAAT TGCAGTCGTT TAATAATATG GCATTTACTG 43929 .......... .......... .......... .......... .......... .......... 616 TGATCTGTAT AAACTTTTTC AGAAATGTGT TCCTTGTAGT ATCTACGACT TGACTCTTAG 43869 .......... .......... .......... .......... .......... .......... 616 GAGCTTCAGA TAATTGAAGG ACCATGGAGA CGTTATATTT GTTCTATGAT TTCTTTCTTC 43809 .......... .......... .......... .......... .......... .......... 616 TTTTGTTTTA GATCAATATT TTTCATCCTT TGTGCTTAAA CCACTTCTTG GTTTCTTCTT 43749 .......... .......... .......... .......... .......... .......... 616 TACCTCGTCT GGATCAATAT TATTTCTTAA TTCACAAAGA AGCTTGCAAA TTTAGGGTCA 43689 .......... .......... .......... .......... .......... .......... 616 GAATATGCCC ATGATCCAAA TGTCTAACCA AGGATGTTCG CTGTCACTTA CGATCTATAT 43629 .......... .......... .......... .......... .......... .......... 616 ACGTAGTTTG TACTGGAGGA TTATCTAATG CAAGATTGAA TAAATTGATA TATATTTAGG 43569 .......... .......... .......... .......... .......... .......... 616 TTTTATCTGC TTTTGTTTAA ATACAGAAGG AGGGAAAAAA GTGATCTCGA CAAACACAAA 43509 .......... .......... .......... .......... .......... .......... 616 TCAGTACTCA TTCCCCAAGC ACATAGGTCT AGAAGGGAAA AAAAGAAGTT TCATACCATC 43449 .......... .......... .......... .......... .......... .......... 616 TGGCTAGTCA TTTCGTCATA ATGGAAATTT TTAAGAATGA AAGTTGGGGT CTTAACATTT 43389 .......... .......... .......... .......... .......... .......... 616 ATTAACTGTT TATTTTACTC TAACTGGTGT TGATGGTTTC ATTTACCAAA CAGAATAAAT 43329 .......... .......... .......... .......... .......... .......... 616 CTGTGGTGTT GGGTGATGCG ATTGTCAATT TTATTTTTCT TTGCAGGGTT CTGAGTGCCT 43269 |||| |||||||||| .......... .......... .......... .......... ......GGTT CTGAGTGCCT 630 GAGCAATCCT CGAGAAAGGA AGGGTACTGG -TAGAAGGGA GTTTACTATC ATTTTTAACT 43210 |||||||||| |||||||||| | || ||||| || || ||| |||||||||| |||||||||| GAGCAATCCT CGAGAAAGGA ACGGGACTGG NTANAAAGGA GTTTACTATC ATTTTTAACT 690 hqPGS_C09HBa0099P03.1-2-_SGN-E262885+ (45487 45311,45194 45063,44984 44863,44742 44651,44581 44490,43282 43210) ******************************************************************************** EST sequence 68 +strand 590 n (File: SGN-E551085+) 1 TGGATGACTT ATTGGAGAAT TATGGTGGAA ATGAAGTACA ACAGTTCGAG GAGAATTTGG 61 TCTCATCTGA AGTAGCAGTT GTACATGATC CAAATGAGCA TTCCATGGCT GAGGTTCTGG 121 ATCACTTTCA GCATACAAGT TCCTCACGAG GCAATCCTAA AATGCTGCAA ACAAAAATAC 181 CTGGATCACG GTTCTTACGG AAGAGAAACT TATTGCTGCT TGGTGACAGA AACATGAGCA 241 ATGGCGAACA ACCTGAGGAA CTAGATAGTG ATCCATCTAG TGATGAGGAT GTAAATGAAG 301 TTCCCCAGAT TCTGAAGTCT GCTATACCTC AGAGGACCAT GGCTGACCAA TTTCATCTAG 361 CGTTAGGAGC TGTATCCACA AATGAGAGGC TATGTATTGC AAGGCCTAAG CAATTTGGTT 421 TATCTGGAAG GTTGCAGCAC GTGATGCAAT GTGAAAAGGA CAGAGATACA TATTTTTTGG 481 AGAAGTCACA AACACATGCT GCTTNCAGTG GTGCAGAAAG CTTCATTGAT GTGAGAATTT 541 TGTCAAGTTC TTTGGAGGCC AAGCTGACTG TTTGTTTTTG TGCTTTACAT Predicted gene structure (within gDNA segment 46074 to 43892): Exon 1 45474 45311 ( 164 n); cDNA 1 164 ( 164 n); score: 1.000 Intron 1 45310 45195 ( 116 n); Pd: 0.933 (s: 1.00), Pa: 0.823 (s: 1.00) Exon 2 45194 45063 ( 132 n); cDNA 165 296 ( 132 n); score: 1.000 Intron 2 45062 44985 ( 78 n); Pd: 0.829 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 44984 44863 ( 122 n); cDNA 297 418 ( 122 n); score: 1.000 Intron 3 44862 44743 ( 120 n); Pd: 0.900 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 44742 44651 ( 92 n); cDNA 419 510 ( 92 n); score: 0.978 Intron 4 44650 44582 ( 69 n); Pd: 0.275 (s: 0.96), Pa: 0.953 (s: 1.00) Exon 5 44581 44502 ( 80 n); cDNA 511 590 ( 80 n); score: 1.000 MATCH C09HBa0099P03.1-2- SGN-E551085+ 0.997 590 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E551085+ (45474 45311,45194 45063,44984 44863,44742 44651,44581 44502) Alignment (genomic DNA sequence = upper lines): TGGATGACTT ATTGGAGAAT TATGGTGGAA ATGAAGTACA ACAGTTCGAG GAGAATTTGG 45415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGACTT ATTGGAGAAT TATGGTGGAA ATGAAGTACA ACAGTTCGAG GAGAATTTGG 60 TCTCATCTGA AGTAGCAGTT GTACATGATC CAAATGAGCA TTCCATGGCT GAGGTTCTGG 45355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCATCTGA AGTAGCAGTT GTACATGATC CAAATGAGCA TTCCATGGCT GAGGTTCTGG 120 ATCACTTTCA GCATACAAGT TCCTCACGAG GCAATCCTAA AATGGTTTGC TTTCTTCTTC 45295 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATCACTTTCA GCATACAAGT TCCTCACGAG GCAATCCTAA AATG...... .......... 164 TCCAGATCTC TTTTCTTAAA GATCTCAGCA GCGCTTCCGT ATTACCATTT TTACTATTTC 45235 .......... .......... .......... .......... .......... .......... 164 AATTATGTTT TTGAACGTAA GAATCATGCC TATCCAACAG CTGCAAACAA AAATACCTGG 45175 |||||||||| |||||||||| .......... .......... .......... .......... CTGCAAACAA AAATACCTGG 184 ATCACGGTTC TTACGGAAGA GAAACTTATT GCTGCTTGGT GACAGAAACA TGAGCAATGG 45115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACGGTTC TTACGGAAGA GAAACTTATT GCTGCTTGGT GACAGAAACA TGAGCAATGG 244 CGAACAACCT GAGGAACTAG ATAGTGATCC ATCTAGTGAT GAGGATGTAA ATGTAGTTAA 45055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CGAACAACCT GAGGAACTAG ATAGTGATCC ATCTAGTGAT GAGGATGTAA AT........ 296 TCTTTTACTG CTTAATCATC ACGATCAATT GCCATATGTA GTTCTCTCAA TTCCTTTCTT 44995 .......... .......... .......... .......... .......... .......... 296 TTTGTTTCAG GAAGTTCCCC AGATTCTGAA GTCTGCTATA CCTCAGAGGA CCATGGCTGA 44935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAAGTTCCCC AGATTCTGAA GTCTGCTATA CCTCAGAGGA CCATGGCTGA 346 CCAATTTCAT CTAGCGTTAG GAGCTGTATC CACAAATGAG AGGCTATGTA TTGCAAGGCC 44875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTTCAT CTAGCGTTAG GAGCTGTATC CACAAATGAG AGGCTATGTA TTGCAAGGCC 406 TAAGCAATTT GGGTGAGTTA TGGAACTAGA ATGTATCAGT TATGAGCATA TTCTGCATGT 44815 |||||||||| || TAAGCAATTT GG........ .......... .......... .......... .......... 418 TTTCTATGAA CAGAAACAGA AAAATATTCT TCAAATTTTA TCTTTTCTTA CTTGTGTTGA 44755 .......... .......... .......... .......... .......... .......... 418 TAAGTCATGC AGTTTATCTG GAAGGTTGCA GCACGTGATG CAATGTGAAA AGGACAGAGA 44695 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..TTTATCTG GAAGGTTGCA GCACGTGATG CAATGTGAAA AGGACAGAGA 466 TACATATTTT TTGGAGAAGT CACAAACACA TGCTGCTTCA AGTGGTAAAA GGCCAAACTG 44635 |||||||||| |||||||||| |||||||||| |||||||| |||| TACATATTTT TTGGAGAAGT CACAAACACA TGCTGCTTNC AGTG...... .......... 510 TGTATCTCCT GTCTCTTGCT TGTTTCTGAC CTTCTCCTCT GCTGTTAATT CAGGTGCAGA 44575 ||||||| .......... .......... .......... .......... .......... ...GTGCAGA 517 AAGCTTCATT GATGTGAGAA TTTTGTCAAG TTCTTTGGAG GCCAAGCTGA CTGTTTGTTT 44515 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTTCATT GATGTGAGAA TTTTGTCAAG TTCTTTGGAG GCCAAGCTGA CTGTTTGTTT 577 TTGTGCTTTA CAT 44502 |||||||||| ||| TTGTGCTTTA CAT 590 hqPGS_C09HBa0099P03.1-2-_SGN-E551085+ (45474 45311,45194 45063,44984 44863,44742 44651,44581 44502) ******************************************************************************** EST sequence 83 +strand 551 n (File: SGN-E251477+) 1 AAATATAGAG TCACTGGATG ACTTATTGGA GAATTATGGT GGAAATGAAG TACAACAGTT 61 CGAGGAGAAT TTGGTCTCAT CTGAAGTAGC AGTTGTACAT GATCCAAATG AGCATTCCAT 121 GGCTGAGGTT CTGGATCACT TTCAGCATAC AAGTTCCTCA CGAGGCAATC CTAAAATGCT 181 GCAAACAAAA ATACCTGGAT CACGGTTCTT ACGGAAGAGA AACTTATTGC TGCTTGGTGA 241 CAGAAACATG AGCAATGGCG AACAACCTGA GGAACTAGAT AGTGATCCAT CTAGTGATGA 301 GGATGTAAAT GAAGTTCCCC AGATTCTGAA GTCTGCTATA CCTCAGAGGA CCATGGCTGA 361 CCAATTTCAT CTAGCGTTAG GAGCTGTATC CACAAATGAG AGGCTATGTA TTGCAAGGCC 421 TAAGCAATTT GGTTTATCTG GAAGGTTGCA GCACGTGATG CAATGTGAAA AGGACAGAGA 481 TACATATTTT TTGGAGAAGT CACAAACACA TGCTGCTTCA AGTGGTGCAG AAAGCTTCAT 541 TGATGTGAGA A Predicted gene structure (within gDNA segment 46088 to 43789): Exon 1 45488 45311 ( 178 n); cDNA 1 178 ( 178 n); score: 1.000 Intron 1 45310 45195 ( 116 n); Pd: 0.933 (s: 1.00), Pa: 0.823 (s: 1.00) Exon 2 45194 45063 ( 132 n); cDNA 179 310 ( 132 n); score: 1.000 Intron 2 45062 44985 ( 78 n); Pd: 0.829 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 44984 44863 ( 122 n); cDNA 311 432 ( 122 n); score: 1.000 Intron 3 44862 44743 ( 120 n); Pd: 0.900 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 4 44742 44651 ( 92 n); cDNA 433 524 ( 92 n); score: 1.000 Intron 4 44650 44582 ( 69 n); Pd: 0.275 (s: 1.00), Pa: 0.953 (s: 0) Exon 5 44581 44555 ( 27 n); cDNA 525 551 ( 27 n); score: 1.000 MATCH C09HBa0099P03.1-2- SGN-E251477+ 1.000 551 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E251477+ (45488 45311,45194 45063,44984 44863,44742 44651,44581 44555) Alignment (genomic DNA sequence = upper lines): AAATATAGAG TCACTGGATG ACTTATTGGA GAATTATGGT GGAAATGAAG TACAACAGTT 45429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATAGAG TCACTGGATG ACTTATTGGA GAATTATGGT GGAAATGAAG TACAACAGTT 60 CGAGGAGAAT TTGGTCTCAT CTGAAGTAGC AGTTGTACAT GATCCAAATG AGCATTCCAT 45369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGGAGAAT TTGGTCTCAT CTGAAGTAGC AGTTGTACAT GATCCAAATG AGCATTCCAT 120 GGCTGAGGTT CTGGATCACT TTCAGCATAC AAGTTCCTCA CGAGGCAATC CTAAAATGGT 45309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGCTGAGGTT CTGGATCACT TTCAGCATAC AAGTTCCTCA CGAGGCAATC CTAAAATG.. 178 TTGCTTTCTT CTTCTCCAGA TCTCTTTTCT TAAAGATCTC AGCAGCGCTT CCGTATTACC 45249 .......... .......... .......... .......... .......... .......... 178 ATTTTTACTA TTTCAATTAT GTTTTTGAAC GTAAGAATCA TGCCTATCCA ACAGCTGCAA 45189 |||||| .......... .......... .......... .......... .......... ....CTGCAA 184 ACAAAAATAC CTGGATCACG GTTCTTACGG AAGAGAAACT TATTGCTGCT TGGTGACAGA 45129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAATAC CTGGATCACG GTTCTTACGG AAGAGAAACT TATTGCTGCT TGGTGACAGA 244 AACATGAGCA ATGGCGAACA ACCTGAGGAA CTAGATAGTG ATCCATCTAG TGATGAGGAT 45069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATGAGCA ATGGCGAACA ACCTGAGGAA CTAGATAGTG ATCCATCTAG TGATGAGGAT 304 GTAAATGTAG TTAATCTTTT ACTGCTTAAT CATCACGATC AATTGCCATA TGTAGTTCTC 45009 |||||| GTAAAT.... .......... .......... .......... .......... .......... 310 TCAATTCCTT TCTTTTTGTT TCAGGAAGTT CCCCAGATTC TGAAGTCTGC TATACCTCAG 44949 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GAAGTT CCCCAGATTC TGAAGTCTGC TATACCTCAG 346 AGGACCATGG CTGACCAATT TCATCTAGCG TTAGGAGCTG TATCCACAAA TGAGAGGCTA 44889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACCATGG CTGACCAATT TCATCTAGCG TTAGGAGCTG TATCCACAAA TGAGAGGCTA 406 TGTATTGCAA GGCCTAAGCA ATTTGGGTGA GTTATGGAAC TAGAATGTAT CAGTTATGAG 44829 |||||||||| |||||||||| |||||| TGTATTGCAA GGCCTAAGCA ATTTGG.... .......... .......... .......... 432 CATATTCTGC ATGTTTTCTA TGAACAGAAA CAGAAAAATA TTCTTCAAAT TTTATCTTTT 44769 .......... .......... .......... .......... .......... .......... 432 CTTACTTGTG TTGATAAGTC ATGCAGTTTA TCTGGAAGGT TGCAGCACGT GATGCAATGT 44709 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......TTTA TCTGGAAGGT TGCAGCACGT GATGCAATGT 466 GAAAAGGACA GAGATACATA TTTTTTGGAG AAGTCACAAA CACATGCTGC TTCAAGTGGT 44649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GAAAAGGACA GAGATACATA TTTTTTGGAG AAGTCACAAA CACATGCTGC TTCAAGTG.. 524 AAAAGGCCAA ACTGTGTATC TCCTGTCTCT TGCTTGTTTC TGACCTTCTC CTCTGCTGTT 44589 .......... .......... .......... .......... .......... .......... 524 AATTCAGGTG CAGAAAGCTT CATTGATGTG AGAA 44555 ||| |||||||||| |||||||||| |||| .......GTG CAGAAAGCTT CATTGATGTG AGAA 551 hqPGS_C09HBa0099P03.1-2-_SGN-E251477+ (45488 45311,45194 45063,44984 44863,44742 44651,44581 44555) ******************************************************************************** EST sequence 103 +strand 515 n (File: SGN-E260051+) 1 AAATATAGAG TCACTGGATG ACTTATTGGA GAATTATGGT GGAAATGAAG TACAACAGTT 61 CGAGGAGAAT TTGGTCTCAT CTGAAGTAGC AGTTGTACAT GATCCAAATG AGCATTCCAT 121 GGCTGAGGTT CTGGATCACT TTCAGCATAC AAGTTCCTCA CGAGGCAATC CTAAAATGCT 181 GCAAACAAAA ATACCTGGAT CACGGTTCTT ACGGAAGAGA AACTTATTGC TGCTTGGTGA 241 CAGAAACATG AGCAATGGCG AACAACCTGA GGAACTAGAT AGTGATCCAT CTAGTGATGA 301 GGATGTAAAT GAAGTTCCCC AGATTCTGAA GTCTGCTATA CCTCAGAGGA CCATGGCTGA 361 CCAATTTCAT CTAGCGTTAG GAGCTGTATC CACAAATGAG AGGCTATGTA TTGCAAGGCC 421 TAAGCAATTT GGTTTATCTG GAAAGTTGCA GCACGTGATG CAATGTTGAA AAGACAGAGA 481 TACATATTTT TTGGAGAAGT CACAAACACA TGCTG Predicted gene structure (within gDNA segment 46088 to 44050): Exon 1 45488 45311 ( 178 n); cDNA 1 178 ( 178 n); score: 1.000 Intron 1 45310 45195 ( 116 n); Pd: 0.933 (s: 1.00), Pa: 0.823 (s: 1.00) Exon 2 45194 45063 ( 132 n); cDNA 179 310 ( 132 n); score: 1.000 Intron 2 45062 44985 ( 78 n); Pd: 0.829 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 44984 44863 ( 122 n); cDNA 311 432 ( 122 n); score: 1.000 Intron 3 44862 44743 ( 120 n); Pd: 0.900 (s: 1.00), Pa: 0.982 (s: 0.92) Exon 4 44742 44660 ( 83 n); cDNA 433 515 ( 83 n); score: 0.952 MATCH C09HBa0099P03.1-2- SGN-E260051+ 0.992 515 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E260051+ (45488 45311,45194 45063,44984 44863,44742 44660) Alignment (genomic DNA sequence = upper lines): AAATATAGAG TCACTGGATG ACTTATTGGA GAATTATGGT GGAAATGAAG TACAACAGTT 45429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATAGAG TCACTGGATG ACTTATTGGA GAATTATGGT GGAAATGAAG TACAACAGTT 60 CGAGGAGAAT TTGGTCTCAT CTGAAGTAGC AGTTGTACAT GATCCAAATG AGCATTCCAT 45369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGGAGAAT TTGGTCTCAT CTGAAGTAGC AGTTGTACAT GATCCAAATG AGCATTCCAT 120 GGCTGAGGTT CTGGATCACT TTCAGCATAC AAGTTCCTCA CGAGGCAATC CTAAAATGGT 45309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGCTGAGGTT CTGGATCACT TTCAGCATAC AAGTTCCTCA CGAGGCAATC CTAAAATG.. 178 TTGCTTTCTT CTTCTCCAGA TCTCTTTTCT TAAAGATCTC AGCAGCGCTT CCGTATTACC 45249 .......... .......... .......... .......... .......... .......... 178 ATTTTTACTA TTTCAATTAT GTTTTTGAAC GTAAGAATCA TGCCTATCCA ACAGCTGCAA 45189 |||||| .......... .......... .......... .......... .......... ....CTGCAA 184 ACAAAAATAC CTGGATCACG GTTCTTACGG AAGAGAAACT TATTGCTGCT TGGTGACAGA 45129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAATAC CTGGATCACG GTTCTTACGG AAGAGAAACT TATTGCTGCT TGGTGACAGA 244 AACATGAGCA ATGGCGAACA ACCTGAGGAA CTAGATAGTG ATCCATCTAG TGATGAGGAT 45069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATGAGCA ATGGCGAACA ACCTGAGGAA CTAGATAGTG ATCCATCTAG TGATGAGGAT 304 GTAAATGTAG TTAATCTTTT ACTGCTTAAT CATCACGATC AATTGCCATA TGTAGTTCTC 45009 |||||| GTAAAT.... .......... .......... .......... .......... .......... 310 TCAATTCCTT TCTTTTTGTT TCAGGAAGTT CCCCAGATTC TGAAGTCTGC TATACCTCAG 44949 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GAAGTT CCCCAGATTC TGAAGTCTGC TATACCTCAG 346 AGGACCATGG CTGACCAATT TCATCTAGCG TTAGGAGCTG TATCCACAAA TGAGAGGCTA 44889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACCATGG CTGACCAATT TCATCTAGCG TTAGGAGCTG TATCCACAAA TGAGAGGCTA 406 TGTATTGCAA GGCCTAAGCA ATTTGGGTGA GTTATGGAAC TAGAATGTAT CAGTTATGAG 44829 |||||||||| |||||||||| |||||| TGTATTGCAA GGCCTAAGCA ATTTGG.... .......... .......... .......... 432 CATATTCTGC ATGTTTTCTA TGAACAGAAA CAGAAAAATA TTCTTCAAAT TTTATCTTTT 44769 .......... .......... .......... .......... .......... .......... 432 CTTACTTGTG TTGATAAGTC ATGCAGTTTA TCTGGAAGGT TGCAGCACGT GATGCAATGT 44709 |||| ||||||| || |||||||||| |||||||||| .......... .......... ......TTTA TCTGGAAAGT TGCAGCACGT GATGCAATGT 466 GAAAAGGACA GAGATACATA TTTTTTGGAG AAGTCACAAA CACATGCTG 44660 ||| |||| |||||||||| |||||||||| |||||||||| ||||||||| TGAAAAGACA GAGATACATA TTTTTTGGAG AAGTCACAAA CACATGCTG 515 hqPGS_C09HBa0099P03.1-2-_SGN-E260051+ (45488 45311,45194 45063,44984 44863,44742 44660) ******************************************************************************** EST sequence 82 +strand 462 n (File: SGN-E271203+) 1 TTGAAGTTTC TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACAAAAAT GATCAGGATG 61 GTAGCTTCAT CAACAAAAAT GATCATTGGA AGGCGTTGTC CTGCTCCTTA GATGATGAAT 121 TTTGTCACGT CACTAGAATT ACATCCACTT GTAATTCAGA AGAGGAAATT ATGTCTGATG 181 ATGAGATGAG GCCTTCTACT GATGGAAAAT TCAAAAGAGA TGGTAAAAGT ACAATGCTTA 241 AAGTAAGCGC AGATTGCAAA TCAGGAGCTT TCTTCAATAA AGATGCTGGG TGTTCATCGG 301 TATACGGGGC CTCATCAAAA TTGAACAGAT CATCTAAAGG AAGCCCGGGC AAATCTAAGG 361 CCAAATTTTT GTTCCAATCC CGGCCACAGA AGAAAGACTA TGCTTTGGTT GTCCATGATA 421 GTTGTGAAAC CTGCATGCCC TTATCTGTGC TTCCACTAAA TG Predicted gene structure (within gDNA segment 47538 to 44901): Exon 1 46446 46262 ( 185 n); cDNA 1 185 ( 185 n); score: 0.995 Intron 1 46261 46157 ( 105 n); Pd: 0.996 (s: 1.00), Pa: 0.949 (s: 1.00) Exon 2 46156 46003 ( 154 n); cDNA 186 339 ( 154 n); score: 1.000 Intron 2 46002 45634 ( 369 n); Pd: 0.998 (s: 1.00), Pa: 0.971 (s: 1.00) Exon 3 45633 45511 ( 123 n); cDNA 340 462 ( 123 n); score: 1.000 MATCH C09HBa0099P03.1-2- SGN-E271203+ 0.998 462 1.000 C PGS_C09HBa0099P03.1-2-_SGN-E271203+ (46446 46262,46156 46003,45633 45511) Alignment (genomic DNA sequence = upper lines): TTGAAGTTCC TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACAAAAAT GATCAGGATG 46387 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGTTTC TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACAAAAAT GATCAGGATG 60 GTAGCTTCAT CAACAAAAAT GATCATTGGA AGGCGTTGTC CTGCTCCTTA GATGATGAAT 46327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCTTCAT CAACAAAAAT GATCATTGGA AGGCGTTGTC CTGCTCCTTA GATGATGAAT 120 TTTGTCACGT CACTAGAATT ACATCCACTT GTAATTCAGA AGAGGAAATT ATGTCTGATG 46267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTCACGT CACTAGAATT ACATCCACTT GTAATTCAGA AGAGGAAATT ATGTCTGATG 180 ATGAGGTATG ACTGCTGATC TCTATGTAGA TCGATATCAC TAAAACTTGA ATAATTAATA 46207 ||||| ATGAG..... .......... .......... .......... .......... .......... 185 TTTTGTCCAA CCTATACTAA GTGGATCTTT GGAGGTTAAA AATCTGGCAG ATGAGGCCTT 46147 |||||||||| .......... .......... .......... .......... .......... ATGAGGCCTT 195 CTACTGATGG AAAATTCAAA AGAGATGGTA AAAGTACAAT GCTTAAAGTA AGCGCAGATT 46087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTGATGG AAAATTCAAA AGAGATGGTA AAAGTACAAT GCTTAAAGTA AGCGCAGATT 255 GCAAATCAGG AGCTTTCTTC AATAAAGATG CTGGGTGTTC ATCGGTATAC GGGGCCTCAT 46027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATCAGG AGCTTTCTTC AATAAAGATG CTGGGTGTTC ATCGGTATAC GGGGCCTCAT 315 CAAAATTGAA CAGATCATCT AAAGGTATTA GTATTTCTGT TGACTTCATT TCCCTATTTT 45967 |||||||||| |||||||||| |||| CAAAATTGAA CAGATCATCT AAAG...... .......... .......... .......... 339 GCATTCTTTG TCTTGATGCT AAAGATGTCG TCAACTCCCC CAACGAGAAG AATGATCTTA 45907 .......... .......... .......... .......... .......... .......... 339 ATCAAGCATT GTTCATCACA GTTGGTTAAG TTGTCTTGGA CTAAGCTGTT ACTGACAAGC 45847 .......... .......... .......... .......... .......... .......... 339 ATAACAATGT AATCCCCCCC CCCCAGCATA ACATGTGTAA TTGTGGTGTT TCTCAGGAAC 45787 .......... .......... .......... .......... .......... .......... 339 AAGTGAACTC CAAGTAAAAT AGAAAAGAAA TGGATGCATC TCAATATTGA ATCCTCGAGT 45727 .......... .......... .......... .......... .......... .......... 339 CTGACATCTA TGACGGCTCT TTTTTTTTAC TTGAGATCTG TGATTGAGTT TTCAAGCTGT 45667 .......... .......... .......... .......... .......... .......... 339 AAATTTTTGA ACGACTTTTG ATATCAACTG CAGGAAGCCC GGGCAAATCT AAGGCCAAAT 45607 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GAAGCCC GGGCAAATCT AAGGCCAAAT 366 TTTTGTTCCA ATCCCGGCCA CAGAAGAAAG ACTATGCTTT GGTTGTCCAT GATAGTTGTG 45547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTTCCA ATCCCGGCCA CAGAAGAAAG ACTATGCTTT GGTTGTCCAT GATAGTTGTG 426 AAACCTGCAT GCCCTTATCT GTGCTTCCAC TAAATG 45511 |||||||||| |||||||||| |||||||||| |||||| AAACCTGCAT GCCCTTATCT GTGCTTCCAC TAAATG 462 hqPGS_C09HBa0099P03.1-2-_SGN-E271203+ (46446 46262,46156 46003,45633 45511) ******************************************************************************** EST sequence 102 +strand 492 n (File: SGN-E249136+) 1 CCCAATTAGC TCCGCAAAAT TGCGTCTCTG CTTGTTACCA GCGGTGGGAG AGAAAGGTTC 61 AGCTGCTAGT AGAGTATTTC TTCAGGAAAA GGAAGATTCG AACCAGAGTT TTTCCGAAGA 121 GGAAGATATG GACGATGACG AATGGATGAC AAATGACAAT TGTTCCTTAG AAAACAAGGG 181 AGGTTTAGGA GTCCTTTCCC AGCTTGAACG GCTCACAGAT GTCAAAAGAC TTCATCATTC 241 AACCGATACA GTGAACTCTG ATCAGCTGGT ACAGAGGCGG ACAGGTTTAT GCGAAGAAGA 301 TGACGTTGAA GTTCCTTTGT TTAAGAGTCA GGATGGTAGC CTGATCAACA AAAATGATCA 361 GGATGGTAGC TTCATCAACA AAAATGATCA TTGGAAGGCG TTGTCCTGCT CCTTAGATGA 421 TGAATTTTGT CACGTCACTA GAATTACATC CACTTGTGAT TCAGAAGAGG AAATTATGTC 481 TGATGATGAG AT Predicted gene structure (within gDNA segment 48836 to 45632): Exon 1 48236 48152 ( 85 n); cDNA 1 85 ( 85 n); score: 0.965 Intron 1 48151 47977 ( 175 n); Pd: 0.870 (s: 0.94), Pa: 0.950 (s: 0) Exon 2 47976 47946 ( 31 n); cDNA 86 116 ( 31 n); score: 1.000 Intron 2 47945 47839 ( 107 n); Pd: 0.582 (s: 0), Pa: 0.995 (s: 1.00) Exon 3 47838 47777 ( 62 n); cDNA 117 178 ( 62 n); score: 1.000 Intron 3 47776 47323 ( 454 n); Pd: 0.998 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 4 47322 47283 ( 40 n); cDNA 179 218 ( 40 n); score: 1.000 Intron 4 47282 47173 ( 110 n); Pd: 0.899 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 47172 47117 ( 56 n); cDNA 219 274 ( 56 n); score: 1.000 Intron 5 47116 46478 ( 639 n); Pd: 0.998 (s: 1.00), Pa: 0.011 (s: 1.00) Exon 6 46477 46262 ( 216 n); cDNA 275 490 ( 216 n); score: 0.995 MATCH C09HBa0099P03.1-2- SGN-E249136+ 0.990 490 0.996 C PGS_C09HBa0099P03.1-2-_SGN-E249136+ (48236 48152,47976 47946,47838 47777,47322 47283,47172 47117,46477 46262) Alignment (genomic DNA sequence = upper lines): CCCAATTAGC TCCGCAAAAT TGCGTCTCTG CTTGTTACCA GCTATGGAAG AGAAAGGTTC 48177 |||||||||| |||||||||| |||||||||| |||||||||| || ||| || |||||||||| CCCAATTAGC TCCGCAAAAT TGCGTCTCTG CTTGTTACCA GCGGTGGGAG AGAAAGGTTC 60 AGCTGCTAGT AGAGTATTTC TTCAGGTATT TCGAGATTTT CCTAACAATT TTCATCATTT 48117 |||||||||| |||||||||| ||||| AGCTGCTAGT AGAGTATTTC TTCAG..... .......... .......... .......... 85 TGCTCAAAAA TCGGAGATTA TCTCATCAGT ATTGTAGTTT TAGGTTACCT GCAATTGTTC 48057 .......... .......... .......... .......... .......... .......... 85 AGACGATTTT TTGTGTTGAT TTTGAATGAA TTTCGATGTT TTCTGTAAAG TTGAACTTGA 47997 .......... .......... .......... .......... .......... .......... 85 TTTCCTCAAT TATAATGCAG GAAAAGGAAG ATTCGAACCA GAGTTTTTCC GGTACCTTTC 47937 |||||||||| |||||||||| |||||||||| | .......... .......... GAAAAGGAAG ATTCGAACCA GAGTTTTTCC G......... 116 TTCTCCTTGA AAGAAAGCTT CACAGTAATA ACCTAGGTCT GTTTGTTTGT TTGTTTTAAT 47877 .......... .......... .......... .......... .......... .......... 116 TGAATCTGCT TTGCTTTGTT TTAAATTGTT ATTGTTAGAA GAGGAAGATA TGGACGATGA 47817 || |||||||||| |||||||||| .......... .......... .......... ........AA GAGGAAGATA TGGACGATGA 138 CGAATGGATG ACAAATGACA ATTGTTCCTT AGAAAACAAG GTAATGCCTA GTTAATTTTC 47757 |||||||||| |||||||||| |||||||||| |||||||||| CGAATGGATG ACAAATGACA ATTGTTCCTT AGAAAACAAG .......... .......... 178 TTGCTTACAT TTTGAAATTC CTCGAGTTAA AACGTCAGCT GCCTTCTATA ATGTTCTAGG 47697 .......... .......... .......... .......... .......... .......... 178 TAAGCTGTTA ATTTATTTTT AGTCTAAGAC AAAATTTGTT TACTGTTAGC AGAATGGATA 47637 .......... .......... .......... .......... .......... .......... 178 TAGAGGAGTC GTATAGCCAA TCCCAACTAA TCTTATTGGC TGATTGATTG TTAAAATGTT 47577 .......... .......... .......... .......... .......... .......... 178 ATCACATAAT TGTCTTGCTT ACTATTCGTA GAAAAACAAA TCTCAAAGTG GTTTGGAGGG 47517 .......... .......... .......... .......... .......... .......... 178 TTAAGGTTTA TGTTTTGGCT TTGATCGTTA GCAATTTAAT TATAGTTGTG AGATTGAGTG 47457 .......... .......... .......... .......... .......... .......... 178 TTTAGTGTTT ATTCACAATG CAGGCATGTT CACTGCACAC ATTTCCTAGT TATCAGTGAA 47397 .......... .......... .......... .......... .......... .......... 178 CCCCTTATTT TGTATATGAA TTTGCTGATG AATACTTTAT AATGCCCAAG ACTTGGATGT 47337 .......... .......... .......... .......... .......... .......... 178 TTCTTGTTTG TCAGGGAGGT TTAGGAGTCC TTTCCCAGCT TGAACGGCTC ACAGGTATTC 47277 |||||| |||||||||| |||||||||| |||||||||| |||| .......... ....GGAGGT TTAGGAGTCC TTTCCCAGCT TGAACGGCTC ACAG...... 218 CCAATGAAAC TTCTCCACTT GATTTTTCAT TCATCAGCAC CCCCCTGCAA AATATTCAAA 47217 .......... .......... .......... .......... .......... .......... 218 AAGATAAGGA CATTTGGGAA GTTATCCATG TTAATCTTCT GCAGATGTCA AAAGACTTCA 47157 |||||| |||||||||| .......... .......... .......... .......... ....ATGTCA AAAGACTTCA 234 TCATTCAACC GATACAGTGA ACTCTGATCA GCTGGTACAG GTTTGAATTC ACCTCCTTTT 47097 |||||||||| |||||||||| |||||||||| |||||||||| TCATTCAACC GATACAGTGA ACTCTGATCA GCTGGTACAG .......... .......... 274 TTTTGTCATA TGACCTACCT TCATTCCTTC TTTCTATTGT TCCTTTGGTC CTCGTCTTTT 47037 .......... .......... .......... .......... .......... .......... 274 CCTCTCTGTT TTTTTTTTTT TTGGGGTTAG ATATGTCTCA AATAGTTCCT AGTTGACTTT 46977 .......... .......... .......... .......... .......... .......... 274 AATGGGTCAT GGTGGTTAAG AATTCAACAT GGAAATTGAC TTTTTGATGG GGATTCCAAG 46917 .......... .......... .......... .......... .......... .......... 274 AAAAAGTTGC TCTCCACTTC TCCCGTTTCT TTTGAATCGT TCAGTTTAAG GAACAACATG 46857 .......... .......... .......... .......... .......... .......... 274 TTGGGCTAAA ATAACCTGGA GATACTCTTA GCATGGTGTA ATATCGTCCG CTTTGGGCCA 46797 .......... .......... .......... .......... .......... .......... 274 AAAGTCGCAC AGTTTTCCTA ATAAGGGCTC AAACATTAAG AGTATCCATC CCTATACCTT 46737 .......... .......... .......... .......... .......... .......... 274 TTATGTAGTT TCTTTTTCCT TTCAGCTACC AATGTGTGAC TACCTTATCA GAAAAAAGAA 46677 .......... .......... .......... .......... .......... .......... 274 AAAAAAATAC CAACGTGGAA CTTTGTTCAT ATACGCAACA CATAGCTTAT TAATTGATGG 46617 .......... .......... .......... .......... .......... .......... 274 GGGAGGCCTG TATTAACATT ATGTGTACCC CATCTACAAA AGGGATCTAT TAGTAAGTGG 46557 .......... .......... .......... .......... .......... .......... 274 AACTAGACAA AAATGATAAG CAGGAAAAAG TTCAGATGAC AACTTCCTCT TACAGTTGCG 46497 .......... .......... .......... .......... .......... .......... 274 GTTGCATTTT TGTCAGCAGA GGCGGACAGG TTTATGCGAA GAAGATGACG TTGAAGTTCC 46437 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A GGCGGACAGG TTTATGCGAA GAAGATGACG TTGAAGTTCC 315 TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACAAAAAT GATCAGGATG GTAGCTTCAT 46377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACAAAAAT GATCAGGATG GTAGCTTCAT 375 CAACAAAAAT GATCATTGGA AGGCGTTGTC CTGCTCCTTA GATGATGAAT TTTGTCACGT 46317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAAAAT GATCATTGGA AGGCGTTGTC CTGCTCCTTA GATGATGAAT TTTGTCACGT 435 CACTAGAATT ACATCCACTT GTAATTCAGA AGAGGAAATT ATGTCTGATG ATGAG 46262 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ||||| CACTAGAATT ACATCCACTT GTGATTCAGA AGAGGAAATT ATGTCTGATG ATGAG 490 hqPGS_C09HBa0099P03.1-2-_SGN-E249136+ (48236 48152,47976 47946,47838 47777,47322 47283,47172 47117,46477 46262) ******************************************************************************** EST sequence 72 +strand 370 n (File: SGN-E203072+) 1 GCACGAGCCC AATTAGCTCC GCAAAATTGC GTCTCTGCTT GTTACCAGCT ATGGAAGAGA 61 AAGGTTCAGC TGCTAGTAGA GTATTTCTTC AGGAAAAGGA AGATTCGAAC CAGAGTTTTT 121 CCGAAGAGGA AGATATGGAC GATGACGAAT GGATGACAAA TGACAATTGT TCCTTAGAAA 181 ACAAGGGAGG TTTAGGAGTC CTTTCCCAGC TTGAACGGCT CACAGATGTC AAAAGACTTC 241 ATCATTCAAC CGATACAGTG AACTCTGATC AGCTGCAGAG GCGGACAGGT TTATGCGAAG 301 AAGATGACGT TGAAGTTCCT TTGTTTAAGA GTCAGGATGG TAGCCTGATC AACATAAATG 361 ATCAGGATGG Predicted gene structure (within gDNA segment 48906 to 45632): Exon 1 48236 48152 ( 85 n); cDNA 8 92 ( 85 n); score: 1.000 Intron 1 48151 47977 ( 175 n); Pd: 0.870 (s: 1.00), Pa: 0.950 (s: 0) Exon 2 47976 47946 ( 31 n); cDNA 93 123 ( 31 n); score: 1.000 Intron 2 47945 47839 ( 107 n); Pd: 0.582 (s: 0), Pa: 0.995 (s: 1.00) Exon 3 47838 47777 ( 62 n); cDNA 124 185 ( 62 n); score: 1.000 Intron 3 47776 47323 ( 454 n); Pd: 0.998 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 4 47322 47283 ( 40 n); cDNA 186 225 ( 40 n); score: 1.000 Intron 4 47282 47173 ( 110 n); Pd: 0.899 (s: 1.00), Pa: 0.954 (s: 1.00) Exon 5 47172 47123 ( 50 n); cDNA 226 275 ( 50 n); score: 1.000 Intron 5 47122 46481 ( 642 n); Pd: 0.970 (s: 1.00), Pa: 0.216 (s: 1.00) Exon 6 46480 46386 ( 95 n); cDNA 276 370 ( 95 n); score: 0.989 MATCH C09HBa0099P03.1-2- SGN-E203072+ 0.997 363 0.981 C PGS_C09HBa0099P03.1-2-_SGN-E203072+ (48236 48152,47976 47946,47838 47777,47322 47283,47172 47123,46480 46386) Alignment (genomic DNA sequence = upper lines): CCCAATTAGC TCCGCAAAAT TGCGTCTCTG CTTGTTACCA GCTATGGAAG AGAAAGGTTC 48177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAATTAGC TCCGCAAAAT TGCGTCTCTG CTTGTTACCA GCTATGGAAG AGAAAGGTTC 67 AGCTGCTAGT AGAGTATTTC TTCAGGTATT TCGAGATTTT CCTAACAATT TTCATCATTT 48117 |||||||||| |||||||||| ||||| AGCTGCTAGT AGAGTATTTC TTCAG..... .......... .......... .......... 92 TGCTCAAAAA TCGGAGATTA TCTCATCAGT ATTGTAGTTT TAGGTTACCT GCAATTGTTC 48057 .......... .......... .......... .......... .......... .......... 92 AGACGATTTT TTGTGTTGAT TTTGAATGAA TTTCGATGTT TTCTGTAAAG TTGAACTTGA 47997 .......... .......... .......... .......... .......... .......... 92 TTTCCTCAAT TATAATGCAG GAAAAGGAAG ATTCGAACCA GAGTTTTTCC GGTACCTTTC 47937 |||||||||| |||||||||| |||||||||| | .......... .......... GAAAAGGAAG ATTCGAACCA GAGTTTTTCC G......... 123 TTCTCCTTGA AAGAAAGCTT CACAGTAATA ACCTAGGTCT GTTTGTTTGT TTGTTTTAAT 47877 .......... .......... .......... .......... .......... .......... 123 TGAATCTGCT TTGCTTTGTT TTAAATTGTT ATTGTTAGAA GAGGAAGATA TGGACGATGA 47817 || |||||||||| |||||||||| .......... .......... .......... ........AA GAGGAAGATA TGGACGATGA 145 CGAATGGATG ACAAATGACA ATTGTTCCTT AGAAAACAAG GTAATGCCTA GTTAATTTTC 47757 |||||||||| |||||||||| |||||||||| |||||||||| CGAATGGATG ACAAATGACA ATTGTTCCTT AGAAAACAAG .......... .......... 185 TTGCTTACAT TTTGAAATTC CTCGAGTTAA AACGTCAGCT GCCTTCTATA ATGTTCTAGG 47697 .......... .......... .......... .......... .......... .......... 185 TAAGCTGTTA ATTTATTTTT AGTCTAAGAC AAAATTTGTT TACTGTTAGC AGAATGGATA 47637 .......... .......... .......... .......... .......... .......... 185 TAGAGGAGTC GTATAGCCAA TCCCAACTAA TCTTATTGGC TGATTGATTG TTAAAATGTT 47577 .......... .......... .......... .......... .......... .......... 185 ATCACATAAT TGTCTTGCTT ACTATTCGTA GAAAAACAAA TCTCAAAGTG GTTTGGAGGG 47517 .......... .......... .......... .......... .......... .......... 185 TTAAGGTTTA TGTTTTGGCT TTGATCGTTA GCAATTTAAT TATAGTTGTG AGATTGAGTG 47457 .......... .......... .......... .......... .......... .......... 185 TTTAGTGTTT ATTCACAATG CAGGCATGTT CACTGCACAC ATTTCCTAGT TATCAGTGAA 47397 .......... .......... .......... .......... .......... .......... 185 CCCCTTATTT TGTATATGAA TTTGCTGATG AATACTTTAT AATGCCCAAG ACTTGGATGT 47337 .......... .......... .......... .......... .......... .......... 185 TTCTTGTTTG TCAGGGAGGT TTAGGAGTCC TTTCCCAGCT TGAACGGCTC ACAGGTATTC 47277 |||||| |||||||||| |||||||||| |||||||||| |||| .......... ....GGAGGT TTAGGAGTCC TTTCCCAGCT TGAACGGCTC ACAG...... 225 CCAATGAAAC TTCTCCACTT GATTTTTCAT TCATCAGCAC CCCCCTGCAA AATATTCAAA 47217 .......... .......... .......... .......... .......... .......... 225 AAGATAAGGA CATTTGGGAA GTTATCCATG TTAATCTTCT GCAGATGTCA AAAGACTTCA 47157 |||||| |||||||||| .......... .......... .......... .......... ....ATGTCA AAAGACTTCA 241 TCATTCAACC GATACAGTGA ACTCTGATCA GCTGGTACAG GTTTGAATTC ACCTCCTTTT 47097 |||||||||| |||||||||| |||||||||| |||| TCATTCAACC GATACAGTGA ACTCTGATCA GCTG...... .......... .......... 275 TTTTGTCATA TGACCTACCT TCATTCCTTC TTTCTATTGT TCCTTTGGTC CTCGTCTTTT 47037 .......... .......... .......... .......... .......... .......... 275 CCTCTCTGTT TTTTTTTTTT TTGGGGTTAG ATATGTCTCA AATAGTTCCT AGTTGACTTT 46977 .......... .......... .......... .......... .......... .......... 275 AATGGGTCAT GGTGGTTAAG AATTCAACAT GGAAATTGAC TTTTTGATGG GGATTCCAAG 46917 .......... .......... .......... .......... .......... .......... 275 AAAAAGTTGC TCTCCACTTC TCCCGTTTCT TTTGAATCGT TCAGTTTAAG GAACAACATG 46857 .......... .......... .......... .......... .......... .......... 275 TTGGGCTAAA ATAACCTGGA GATACTCTTA GCATGGTGTA ATATCGTCCG CTTTGGGCCA 46797 .......... .......... .......... .......... .......... .......... 275 AAAGTCGCAC AGTTTTCCTA ATAAGGGCTC AAACATTAAG AGTATCCATC CCTATACCTT 46737 .......... .......... .......... .......... .......... .......... 275 TTATGTAGTT TCTTTTTCCT TTCAGCTACC AATGTGTGAC TACCTTATCA GAAAAAAGAA 46677 .......... .......... .......... .......... .......... .......... 275 AAAAAAATAC CAACGTGGAA CTTTGTTCAT ATACGCAACA CATAGCTTAT TAATTGATGG 46617 .......... .......... .......... .......... .......... .......... 275 GGGAGGCCTG TATTAACATT ATGTGTACCC CATCTACAAA AGGGATCTAT TAGTAAGTGG 46557 .......... .......... .......... .......... .......... .......... 275 AACTAGACAA AAATGATAAG CAGGAAAAAG TTCAGATGAC AACTTCCTCT TACAGTTGCG 46497 .......... .......... .......... .......... .......... .......... 275 GTTGCATTTT TGTCAGCAGA GGCGGACAGG TTTATGCGAA GAAGATGACG TTGAAGTTCC 46437 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......CAGA GGCGGACAGG TTTATGCGAA GAAGATGACG TTGAAGTTCC 319 TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACAAAAAT GATCAGGATG G 46386 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| | TTTGTTTAAG AGTCAGGATG GTAGCCTGAT CAACATAAAT GATCAGGATG G 370 hqPGS_C09HBa0099P03.1-2-_SGN-E203072+ (48236 48152,47976 47946,47838 47777,47322 47283,47172 47123,46480 46386) ******************************************************************************** EST sequence 29 +strand 632 n (File: SGN-E392749+) 1 CTTTTTTAGA TGTAAAGCCA GATAATATTT ATGTGAAAAA TGGTGTATAT AAGCTTGGTG 61 ATTTTGGATG TGCAACTCTT CTTGATAAGA GCCAGCCAAT TGAAGAGGGT GATGCACGTT 121 ATATGCCCCA AGAAATACTT AATGAGAACT ATGATCATCT TGACAAAGTT GACATATTCT 181 CCTTGGGCGC TGCAATATAT GAACTTATTA TAGGGTTTTT TTTGCCAGAA TCATGTTTTC 241 ATTTTCTAAA CCTCAGGGAG GGGAAATTGC CTCTTCTTCC GGGTCACTCC TTGCAATTTC 301 AGAATCTATT CTAGGCAATG ATGGACCCAG ATCCAACACG TCGTCCTTCT GCAAAAGGCG 361 TTGTGGATAA TCCAATCTTT GAAAGATGGC AAAGAAATTC CAACAAGTAG ATATCCATGT 421 AAATCACTGT TTTCTGGGAT TTGTCGATTG CTACTTTTGC CAAAGATCCA GAATTCAAAG 481 CTGCAGTATC TCATGCAGCA TTCTGGTGTT GACCTATAGC CATTTCTGTA AATAGAGATA 541 AAGCTTCATG CACCAAATTT TCCCATTTTG ATGGTGCCAC TTTTGCCAAA TATTATATCA 601 AGAATGTAAT GTTGTATCCT AATTGACCTG CA Predicted gene structure (within gDNA segment 53208 to 55356): Exon 1 53844 54157 ( 314 n); cDNA 1 314 ( 314 n); score: 0.959 Intron 1 54158 54428 ( 271 n); Pd: 1.000 (s: 0.96), Pa: 0.972 (s: 1.00) Exon 2 54429 54746 ( 318 n); cDNA 315 632 ( 318 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E392749+ 0.979 632 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E392749+ (53844 54157,54429 54746) Alignment (genomic DNA sequence = upper lines): CTCATTTAGA TGTAAAGCCA GATAATATTT ATGTGAAAAA TGGTGTATAT AAGCTTGGTG 53903 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTAGA TGTAAAGCCA GATAATATTT ATGTGAAAAA TGGTGTATAT AAGCTTGGTG 60 ATTTTGGATG TGCAACTCTT CTTGATAAGA GCCAGCCAAT TGAAGAGGGT GATGCACGTT 53963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGGATG TGCAACTCTT CTTGATAAGA GCCAGCCAAT TGAAGAGGGT GATGCACGTT 120 ATATGCCCCA AGAAATACTT AATGAGAACT ATGATCATCT TGACAAAGTT GACATATTCT 54023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCCCCA AGAAATACTT AATGAGAACT ATGATCATCT TGACAAAGTT GACATATTCT 180 CCTTGGGCGC TGCAATATAT GAACTTATTA GAGGGTCTTC ACTGCCAGAA TCAGGGCCTC 54083 |||||||||| |||||||||| |||||||||| ||||| || |||||||| ||| | || CCTTGGGCGC TGCAATATAT GAACTTATTA TAGGGTTTTT TTTGCCAGAA TCATGTTTTC 240 ATTTTCTAAA CCTCAGGGAG GGGAAATTGC CTCTTCTTCC GGGTCACTCC TTGCAATTTC 54143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCTAAA CCTCAGGGAG GGGAAATTGC CTCTTCTTCC GGGTCACTCC TTGCAATTTC 300 AGAATCTACT CAAGGTATTA ACTTCTTCCC TTTTACTATG TTAAAAAGTC TCTGGATTTG 54203 |||||||| | | || AGAATCTATT CTAG...... .......... .......... .......... .......... 314 TATTTTCCTT TATGCTTCAT GTTCATATGC CTTGATCATC TATCATCTTG TACAACCAGC 54263 .......... .......... .......... .......... .......... .......... 314 ACGCTATCTG AAGCACAATA TTCCATATAT TTTAATCCGA GTATATCTAA ACTGTAGTTA 54323 .......... .......... .......... .......... .......... .......... 314 GATGATATAT TTCGTTTGTC TGTGGCTATG TATGATAACG CTAATCCATA GTCATCTGTA 54383 .......... .......... .......... .......... .......... .......... 314 GAGGCAAATG CTAATTCTCT ATGTCCAAAT TGTAAATGTT CTCAGGCAAT GATGGACCCA 54443 ||||| |||||||||| .......... .......... .......... .......... .....GCAAT GATGGACCCA 329 GATCCAACAC GTCGTCCTTC TGCAAAAGGC GTTGTGGATA ATCCAATCTT TGAAAGATGG 54503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCAACAC GTCGTCCTTC TGCAAAAGGC GTTGTGGATA ATCCAATCTT TGAAAGATGG 389 CAAAGAAATT CCAACAAGTA GATATCCATG TAAATCACTG TTTTCTGGGA TTTGTCGATT 54563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAAATT CCAACAAGTA GATATCCATG TAAATCACTG TTTTCTGGGA TTTGTCGATT 449 GCTACTTTTG CCAAAGATCC AGAATTCAAA GCTGCAGTAT CTCATGCAGC ATTCTGGTGT 54623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTACTTTTG CCAAAGATCC AGAATTCAAA GCTGCAGTAT CTCATGCAGC ATTCTGGTGT 509 TGACCTATAG CCATTTCTGT AAATAGAGAT AAAGCTTCAT GCACCAAATT TTCCCATTTT 54683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCTATAG CCATTTCTGT AAATAGAGAT AAAGCTTCAT GCACCAAATT TTCCCATTTT 569 GATGGTGCCA CTTTTGCCAA ATATTATATC AAGAATGTAA TGTTGTATCC TAATTGACCT 54743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTGCCA CTTTTGCCAA ATATTATATC AAGAATGTAA TGTTGTATCC TAATTGACCT 629 GCA 54746 ||| GCA 632 hqPGS_C09HBa0099P03.1-2+_SGN-E392749+ (53844 54157,54429 54746) ******************************************************************************** EST sequence 49 +strand 457 n (File: SGN-E240536+) 1 TCATTTAGAT GTAAAGCCAG ATAATATTTA TGTGAAAAAT GGTGTATATA AGCTTGGTGA 61 TTTTGGATGT GCAACTCTTC TTGATAAGAG CCAGCCAATT GAAGAGGGTG ATGCACGTTA 121 TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG ACATATTCTC 181 CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT CAGGGCCTCA 241 TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT TGCAATTTCA 301 GAATCTACTC AAGGCAATGA TGGACCCAGA TCCAACACGT CGTCCTTCTG CAAAAGGCGT 361 TGTGGATAAT CCAATCTTTG AAAGATGGCA AAGAAATTCC AACAAGTAGA TATCCATGTA 421 AATCACTGTT TTCTGGGATT TGTCGATTGC TACTTTT Predicted gene structure (within gDNA segment 53245 to 55182): Exon 1 53845 54157 ( 313 n); cDNA 1 313 ( 313 n); score: 1.000 Intron 1 54158 54428 ( 271 n); Pd: 1.000 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 2 54429 54572 ( 144 n); cDNA 314 457 ( 144 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E240536+ 1.000 457 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E240536+ (53845 54157,54429 54572) Alignment (genomic DNA sequence = upper lines): TCATTTAGAT GTAAAGCCAG ATAATATTTA TGTGAAAAAT GGTGTATATA AGCTTGGTGA 53904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTAGAT GTAAAGCCAG ATAATATTTA TGTGAAAAAT GGTGTATATA AGCTTGGTGA 60 TTTTGGATGT GCAACTCTTC TTGATAAGAG CCAGCCAATT GAAGAGGGTG ATGCACGTTA 53964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGATGT GCAACTCTTC TTGATAAGAG CCAGCCAATT GAAGAGGGTG ATGCACGTTA 120 TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG ACATATTCTC 54024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG ACATATTCTC 180 CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT CAGGGCCTCA 54084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT CAGGGCCTCA 240 TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT TGCAATTTCA 54144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT TGCAATTTCA 300 GAATCTACTC AAGGTATTAA CTTCTTCCCT TTTACTATGT TAAAAAGTCT CTGGATTTGT 54204 |||||||||| ||| GAATCTACTC AAG....... .......... .......... .......... .......... 313 ATTTTCCTTT ATGCTTCATG TTCATATGCC TTGATCATCT ATCATCTTGT ACAACCAGCA 54264 .......... .......... .......... .......... .......... .......... 313 CGCTATCTGA AGCACAATAT TCCATATATT TTAATCCGAG TATATCTAAA CTGTAGTTAG 54324 .......... .......... .......... .......... .......... .......... 313 ATGATATATT TCGTTTGTCT GTGGCTATGT ATGATAACGC TAATCCATAG TCATCTGTAG 54384 .......... .......... .......... .......... .......... .......... 313 AGGCAAATGC TAATTCTCTA TGTCCAAATT GTAAATGTTC TCAGGCAATG ATGGACCCAG 54444 |||||| |||||||||| .......... .......... .......... .......... ....GCAATG ATGGACCCAG 329 ATCCAACACG TCGTCCTTCT GCAAAAGGCG TTGTGGATAA TCCAATCTTT GAAAGATGGC 54504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAACACG TCGTCCTTCT GCAAAAGGCG TTGTGGATAA TCCAATCTTT GAAAGATGGC 389 AAAGAAATTC CAACAAGTAG ATATCCATGT AAATCACTGT TTTCTGGGAT TTGTCGATTG 54564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAATTC CAACAAGTAG ATATCCATGT AAATCACTGT TTTCTGGGAT TTGTCGATTG 449 CTACTTTT 54572 |||||||| CTACTTTT 457 hqPGS_C09HBa0099P03.1-2+_SGN-E240536+ (53845 54157,54429 54572) ******************************************************************************** EST sequence 50 +strand 456 n (File: SGN-E240651+) 1 TCATTTAGAT GTAAAGCCAG ATAATATTTA TGTGAAAAAT GGTGTATATA AGCTTGGTGA 61 TTTTGGATGT GCAACTCTTC TTGATAAGAG CCAGCCAATT GAAGAGGGTG ATGCACGTTA 121 TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG ACATATTCTC 181 CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT CAGGGCCTCA 241 TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT TGCAATTTCA 301 GAATCTACTC AAGGCAATGA TGGACCCAGA TCCAACACGT CGTCCTTCTG CAAAAGGCGT 361 TGTGGATAAT CCAATCTTTG AAAGATGGCA AAGAAATTCC AACAAGTAGA TATCCATGTA 421 AATCACTGTT TTCTGGGATT TGTCGATTGC TACTTT Predicted gene structure (within gDNA segment 53245 to 55181): Exon 1 53845 54157 ( 313 n); cDNA 1 313 ( 313 n); score: 1.000 Intron 1 54158 54428 ( 271 n); Pd: 1.000 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 2 54429 54571 ( 143 n); cDNA 314 456 ( 143 n); score: 1.000 MATCH C09HBa0099P03.1-2+ SGN-E240651+ 1.000 456 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E240651+ (53845 54157,54429 54571) Alignment (genomic DNA sequence = upper lines): TCATTTAGAT GTAAAGCCAG ATAATATTTA TGTGAAAAAT GGTGTATATA AGCTTGGTGA 53904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTAGAT GTAAAGCCAG ATAATATTTA TGTGAAAAAT GGTGTATATA AGCTTGGTGA 60 TTTTGGATGT GCAACTCTTC TTGATAAGAG CCAGCCAATT GAAGAGGGTG ATGCACGTTA 53964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGATGT GCAACTCTTC TTGATAAGAG CCAGCCAATT GAAGAGGGTG ATGCACGTTA 120 TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG ACATATTCTC 54024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG ACATATTCTC 180 CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT CAGGGCCTCA 54084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT CAGGGCCTCA 240 TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT TGCAATTTCA 54144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT TGCAATTTCA 300 GAATCTACTC AAGGTATTAA CTTCTTCCCT TTTACTATGT TAAAAAGTCT CTGGATTTGT 54204 |||||||||| ||| GAATCTACTC AAG....... .......... .......... .......... .......... 313 ATTTTCCTTT ATGCTTCATG TTCATATGCC TTGATCATCT ATCATCTTGT ACAACCAGCA 54264 .......... .......... .......... .......... .......... .......... 313 CGCTATCTGA AGCACAATAT TCCATATATT TTAATCCGAG TATATCTAAA CTGTAGTTAG 54324 .......... .......... .......... .......... .......... .......... 313 ATGATATATT TCGTTTGTCT GTGGCTATGT ATGATAACGC TAATCCATAG TCATCTGTAG 54384 .......... .......... .......... .......... .......... .......... 313 AGGCAAATGC TAATTCTCTA TGTCCAAATT GTAAATGTTC TCAGGCAATG ATGGACCCAG 54444 |||||| |||||||||| .......... .......... .......... .......... ....GCAATG ATGGACCCAG 329 ATCCAACACG TCGTCCTTCT GCAAAAGGCG TTGTGGATAA TCCAATCTTT GAAAGATGGC 54504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAACACG TCGTCCTTCT GCAAAAGGCG TTGTGGATAA TCCAATCTTT GAAAGATGGC 389 AAAGAAATTC CAACAAGTAG ATATCCATGT AAATCACTGT TTTCTGGGAT TTGTCGATTG 54564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAATTC CAACAAGTAG ATATCCATGT AAATCACTGT TTTCTGGGAT TTGTCGATTG 449 CTACTTT 54571 ||||||| CTACTTT 456 hqPGS_C09HBa0099P03.1-2+_SGN-E240651+ (53845 54157,54429 54571) ******************************************************************************** EST sequence 87 -strand 626 n (File: SGN-E392855-) 1 ATGCACGTTA TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG 61 ACATATTCTC CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTTTTCA CTGCCAGAAT 121 CAGGGCCTCA TTTTTTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT 181 TGCAATTTCA GAATTTACTC AAGGCAATGA TGGACCCAGA TCCAACACGT TGTCCTTTTG 241 CAAAAGGCGT TGTGGATAAT CCAATCTTTG AAAGATGGCA AAGAAATTCC AACAAGTAGA 301 TATCCATGTA AATCACTGTT TTTTGGGATT TGTCGATTGC TACTTTTGCC AAAGATCCAG 361 AATTCAAAGC TGCAGTATTT CATGCAGCAT TTTGGTGTTG ACCTATAGCC ATTTTTGTAA 421 ATAGAGATAA AGCTTCATGC ACCAAATTTT CCCATTTTGA TGGTGCCACT TTTGCCAAAT 481 ATTATATCAA GAATGAAAAG TTGTATCCTA ATTGACCTGC AAACTGTGGT TTGTATGTCA 541 AAATATGGTA TTTGGTGGCT TTTAAAAAAA GTAATTCAGT ATTGGTTTTT GGTTTTGGTA 601 AAAAAAAAAA AGAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 53345 to 55676): Exon 1 53955 54157 ( 203 n); cDNA 1 203 ( 203 n); score: 0.985 Intron 1 54158 54428 ( 271 n); Pd: 1.000 (s: 0.98), Pa: 0.972 (s: 0.96) Exon 2 54429 54842 ( 414 n); cDNA 204 617 ( 414 n); score: 0.942 MATCH C09HBa0099P03.1-2+ SGN-E392855- 0.956 617 0.986 C PGS_C09HBa0099P03.1-2+_SGN-E392855- (53955 54157,54429 54842) Alignment (genomic DNA sequence = upper lines): ATGCACGTTA TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG 54014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCACGTTA TATGCCCCAA GAAATACTTA ATGAGAACTA TGATCATCTT GACAAAGTTG 60 ACATATTCTC CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTCTTCA CTGCCAGAAT 54074 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ACATATTCTC CTTGGGCGCT GCAATATATG AACTTATTAG AGGGTTTTCA CTGCCAGAAT 120 CAGGGCCTCA TTTTCTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT 54134 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGCCTCA TTTTTTAAAC CTCAGGGAGG GGAAATTGCC TCTTCTTCCG GGTCACTCCT 180 TGCAATTTCA GAATCTACTC AAGGTATTAA CTTCTTCCCT TTTACTATGT TAAAAAGTCT 54194 |||||||||| |||| ||||| ||| TGCAATTTCA GAATTTACTC AAG....... .......... .......... .......... 203 CTGGATTTGT ATTTTCCTTT ATGCTTCATG TTCATATGCC TTGATCATCT ATCATCTTGT 54254 .......... .......... .......... .......... .......... .......... 203 ACAACCAGCA CGCTATCTGA AGCACAATAT TCCATATATT TTAATCCGAG TATATCTAAA 54314 .......... .......... .......... .......... .......... .......... 203 CTGTAGTTAG ATGATATATT TCGTTTGTCT GTGGCTATGT ATGATAACGC TAATCCATAG 54374 .......... .......... .......... .......... .......... .......... 203 TCATCTGTAG AGGCAAATGC TAATTCTCTA TGTCCAAATT GTAAATGTTC TCAGGCAATG 54434 |||||| .......... .......... .......... .......... .......... ....GCAATG 209 ATGGACCCAG ATCCAACACG TCGTCCTTCT GCAAAAGGCG TTGTGGATAA TCCAATCTTT 54494 |||||||||| |||||||||| | |||||| | |||||||||| |||||||||| |||||||||| ATGGACCCAG ATCCAACACG TTGTCCTTTT GCAAAAGGCG TTGTGGATAA TCCAATCTTT 269 GAAAGATGGC AAAGAAATTC CAACAAGTAG ATATCCATGT AAATCACTGT TTTCTGGGAT 54554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| GAAAGATGGC AAAGAAATTC CAACAAGTAG ATATCCATGT AAATCACTGT TTTTTGGGAT 329 TTGTCGATTG CTACTTTTGC CAAAGATCCA GAATTCAAAG CTGCAGTATC TCATGCAGCA 54614 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTGTCGATTG CTACTTTTGC CAAAGATCCA GAATTCAAAG CTGCAGTATT TCATGCAGCA 389 TTCTGGTGTT GACCTATAGC CATTTCTGTA AATAGAGATA AAGCTTCATG CACCAAATTT 54674 || ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTTTGGTGTT GACCTATAGC CATTTTTGTA AATAGAGATA AAGCTTCATG CACCAAATTT 449 TCCCATTTTG ATGGTGCCAC TTTTGCCAAA TATTATATCA AGAATGTAAT GTTGTATCCT 54734 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || |||||||||| TCCCATTTTG ATGGTGCCAC TTTTGCCAAA TATTATATCA AGAATGAAAA GTTGTATCCT 509 AATTGACCTG CAAACTGTGG TTTGTATGTC AAAATATGGT ATTTGGTGGC TTTTAAGCTG 54794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATTGACCTG CAAACTGTGG TTTGTATGTC AAAATATGGT ATTTGGTGGC TTTTAAAAAA 569 ATTAATTCAG TATTGGTTTT TGGTTTTGGT AACTCAGATT TGTATTAA 54842 | |||||||| |||||||||| |||||||||| || | | | || AGTAATTCAG TATTGGTTTT TGGTTTTGGT AAAAAAAAAA AAGAAAAA 617 hqPGS_C09HBa0099P03.1-2+_SGN-E392855- (53955 54157,54429 54842) ******************************************************************************** EST sequence 95 +strand 384 n (File: SGN-E230552+) 1 TTTTTTTATC TTTTGGGAAA ATTACGCGGC TAAGCAAATT TATACTATTT AATTACTCAT 61 CATAGCTATA GTTTGCTATA ATTAGAACTC ATGACTAACA TTATACATTA ATTACGTGGG 121 CTGACTTCGA ATTTGTATTA TTAGTCACTT TCGCCAGGAT ATACAAATAC ACATGTATAA 181 TATACAATTA TTTAACCTAT ATACATATAC AATTCACCTC TCTCCCACTC TCTGCCCTCT 241 CTCGCTCGCC TCTCTCCTCC CTCTCTCAAT TTCACTCGCT TCTCTCCTCC TTCTCCCAAT 301 CTCGCTCGCC ATACATACAA ATGCATATGT ATAATACACA ATTATATACA TATACAATTC 361 ACCTTTCTCC CACTCTTTGC CCCC Predicted gene structure (within gDNA segment 58200 to 54884): Exon 1 56449 56327 ( 123 n); cDNA 16 138 ( 123 n); score: 0.886 Intron 1 56326 55915 ( 412 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.82) Exon 2 55914 55725 ( 190 n); cDNA 139 328 ( 190 n); score: 0.874 Intron 2 55724 55594 ( 131 n); Pd: 0.453 (s: 0.86), Pa: 0.000 (s: 0.80) Exon 3 55593 55536 ( 58 n); cDNA 329 384 ( 56 n); score: 0.810 MATCH C09HBa0099P03.1-2- SGN-E230552+ 0.868 371 0.966 C PGS_C09HBa0099P03.1-2-_SGN-E230552+ (56449 56327,55914 55725,55593 55536) Alignment (genomic DNA sequence = upper lines): GGTAAATTAT GTGGCTAAGC AAACTTATAC TATTTAATTA CTCATCATAG TTATAGTTTA 56390 || |||||| | |||||||| ||| |||||| |||||||||| |||||||||| |||||||| GGAAAATTAC GCGGCTAAGC AAATTTATAC TATTTAATTA CTCATCATAG CTATAGTTTG 75 CTATAATTAC CACCCACGAC TAACATTATA CATTAATTAT ATGGGCTGAC CTCGAGTTTG 56330 ||||||||| || || ||| |||||||||| ||||||||| ||||||||| |||| |||| CTATAATTAG AACTCATGAC TAACATTATA CATTAATTAC GTGGGCTGAC TTCGAATTTG 135 TATAAGAAAA AGTTACATGA ATTAATACAT TTTAAAAAAT AATTACTGAT TTTAGCGATA 56270 ||| TAT....... .......... .......... .......... .......... .......... 138 TTTTGTTTAT GACCATTTAT AGCAATACTG TGATAAATCT GTAATATGTA TTAAAAGTGA 56210 .......... .......... .......... .......... .......... .......... 138 ATTGTTTATG CAATATATTT GAATTATAAT TGTTTTTTAA ATATATTGTA TTTGTTTGAT 56150 .......... .......... .......... .......... .......... .......... 138 AAAAAAATAG TCACGTTGTA TTATAAGTGT ATTAAAATGC GTGATAAGTG TATTATCCAT 56090 .......... .......... .......... .......... .......... .......... 138 CATTAAAACT TGTATTATAT GTAAATAATA AATTATTCTT TGTAATATGT ATTAAACTTG 56030 .......... .......... .......... .......... .......... .......... 138 TATTATAAAT CAATTAAAAG TGATCAAGTG AAAAAATGTC ATTGCTATAA ATGGTAAATA 55970 .......... .......... .......... .......... .......... .......... 138 TTTTTTATTA TAGCACATTT ATATAAGTTT CTCTTTGTAT AATTAGTCAA GTTTGTATAT 55910 ||| .......... .......... .......... .......... .......... .....TATTA 143 ATATAATTCG CCAAGATATA CAAATACATA TGTATAATAT ACAATTATTT AACCTACATA 55850 | |||| ||| |||||| |||||||| | |||||||||| |||||||||| |||||| ||| GTCACTTTCG CCAGGATATA CAAATACACA TGTATAATAT ACAATTATTT AACCTATATA 203 CATATACAAT TTGCCTCTCT CCCACTCTCT GCCCTCTCTC ACTCGCATCT CTCCTCCCTC 55790 |||||||||| | ||||||| |||||||||| |||||||||| ||||| ||| |||||||||| CATATACAAT TCACCTCTCT CCCACTCTCT GCCCTCTCTC GCTCGCCTCT CTCCTCCCTC 263 TCTCAATCTC GCTCATCTCT CTCCTCCCTC TCCTATTCTC GCTTGCCATA TATACAAATG 55730 ||||||| || ||| ||| ||||||| || ||| | |||| ||| |||||| ||||||||| TCTCAATTTC ACTCGCTTCT CTCCTCCTTC TCCCAATCTC GCTCGCCATA CATACAAATG 323 CATATGTACA CAATTATATA CATATACAAT TCACCTCTCT CCCACCCTTT GCCCTCTCTC 55670 ||||| CATAT..... .......... .......... .......... .......... .......... 328 CTCCCTCTCC TAGTCTCGCT CGCCTTCTCC TCCCTCTCTC AATATCTCTT TCCATATACA 55610 .......... .......... .......... .......... .......... .......... 328 AAAATATATT TATAATATAC AATTATCTAA TCAATATACT TATACAATTC ACCTTTCTCC 55550 || || || || | |||||| |||||||||| |||||||||| .......... ......GTAT AA-TACACAA T-TATATACA TATACAATTC ACCTTTCTCC 370 TACTCTTTTC CCCC 55536 ||||||| | |||| CACTCTTTGC CCCC 384 hqPGS_C09HBa0099P03.1-2-_SGN-E230552+ (56449 56327,55914 55725,55593 55536) ******************************************************************************** EST sequence 80 -strand 370 n (File: SGN-E373717-) 1 ATCAACTTCA TAGATTGGTG TAATAAGAGA ATTGTAGTGT TGGGAAACGC TTTTGCGAAA 61 ATTTTGTAAT TGATTGAGTT TTGAGGATTT TGATCTCGAA CTCAATCAAT CATACAAATT 121 TCGTAGTTGA TTGAGTTCTG TGGTGTTTTG ATCTCGAACT CAATCAATCA TTCATTTGCA 181 TTTCGTTGGT GTCTCCCTCC TACGTTTCTC TTCGTTTTTC TTCTCTTTTT TTAAGCAACC 241 AATTCATTGG TGATTAAGTT TACATGTCAT GGAACTCAAC CAATTTTTAT TTTGCTTGAT 301 TTGATCAGCT TTTTTCAAAA CAAACAAACA AAAGATAAAA TTAAATTCGT TTTCATAAAT 361 TAAAAAAAAA Predicted gene structure (within gDNA segment 59394 to 61469): Exon 1 60085 60449 ( 365 n); cDNA 1 369 ( 369 n); score: 0.941 MATCH C09HBa0099P03.1-2+ SGN-E373717- 0.941 365 0.986 C PGS_C09HBa0099P03.1-2+_SGN-E373717- (60085 60449) Alignment (genomic DNA sequence = upper lines): ATCAACTTTA TAGATTGGTG TAATAAGAGA ATTGTAGTGT TGGGAAACGC TTTTGCGAAA 60144 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAACTTCA TAGATTGGTG TAATAAGAGA ATTGTAGTGT TGGGAAACGC TTTTGCGAAA 60 ATTTTGTAAT TGATTGAGTT TTGAGGTTTT TGATCTCGAA CTCAATCAAT CATACAAATT 60204 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| ATTTTGTAAT TGATTGAGTT TTGAGGATTT TGATCTCGAA CTCAATCAAT CATACAAATT 120 TCGTAGTTGA TTGAGTTCTG AGGTGTTTTG ATTTCGAATT CAATCAATCA TTCATTTGCA 60264 |||||||||| |||||||||| ||||||||| || ||||| | |||||||||| |||||||||| TCGTAGTTGA TTGAGTTCTG TGGTGTTTTG ATCTCGAACT CAATCAATCA TTCATTTGCA 180 TTTCGTTGGT GTCTCCCACC TACGTTTCTC TTCGTTTTTC TTCTCTTTTT TTAAGCAACC 60324 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TTTCGTTGGT GTCTCCCTCC TACGTTTCTC TTCGTTTTTC TTCTCTTTTT TTAAGCAACC 240 AATTCATTGG TGATTAAGTT TACATGTCAA TGGAACTCAA CCAATTTTAA TTTTGCTTGA 60384 |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | |||||||||| AATTCATTGG TGATTAAGTT TACATGTC-A TGGAACTCAA CCAATTTTTA TTTTGCTTGA 299 TTTGATCAGC TTTTTTCAAA AC--A-AAAC AAAA-A-AAA ATTAAAATCG TTTTCATAAA 60439 |||||||||| |||||||||| || | |||| |||| | ||| |||||| ||| |||||||||| TTTGATCAGC TTTTTTCAAA ACAAACAAAC AAAAGATAAA ATTAAATTCG TTTTCATAAA 359 TTAAAAAAAA 60449 |||||||||| TTAAAAAAAA 369 hqPGS_C09HBa0099P03.1-2+_SGN-E373717- (60085 60449) ******************************************************************************** EST sequence 22 +strand 370 n (File: SGN-E373718+) 1 TCAACTTCAT AGATTGGTGT AATAAGAGAA TTGTAGTGTT GGGAAACGCT TTTGCGAAAA 61 TTTTGTAATT GATTGAGTTT TGAGGATTTT GATCTCGAAC TCAATCAATC ATACAAATTT 121 CGTAGTTGAT TGAGTTCTGT GGTGTTTTGA TCTCGAACTC AATCAATCAT TCATTTGCAT 181 TTCGTTGGTG TCTCCCTCCT ACGTTTCTCT TCGTTTTTCT TCTCTTTTTT TAAGCAACCA 241 ATTCATTGGT GATTAAGTTT ACATGTCATG GAACTCAACC AATTTTTATT TTGCTTGATT 301 TGATCAGCTT TTTTCAAAAC AAACAAACAA AAGATAAAAT TAAATTCGTT TTCATAAATT 361 AAAAAAAAAA Predicted gene structure (within gDNA segment 59414 to 61489): Exon 1 60086 60449 ( 364 n); cDNA 1 368 ( 368 n); score: 0.941 MATCH C09HBa0099P03.1-2+ SGN-E373718+ 0.941 364 0.984 C PGS_C09HBa0099P03.1-2+_SGN-E373718+ (60086 60449) Alignment (genomic DNA sequence = upper lines): TCAACTTTAT AGATTGGTGT AATAAGAGAA TTGTAGTGTT GGGAAACGCT TTTGCGAAAA 60145 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTTCAT AGATTGGTGT AATAAGAGAA TTGTAGTGTT GGGAAACGCT TTTGCGAAAA 60 TTTTGTAATT GATTGAGTTT TGAGGTTTTT GATCTCGAAC TCAATCAATC ATACAAATTT 60205 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTTTGTAATT GATTGAGTTT TGAGGATTTT GATCTCGAAC TCAATCAATC ATACAAATTT 120 CGTAGTTGAT TGAGTTCTGA GGTGTTTTGA TTTCGAATTC AATCAATCAT TCATTTGCAT 60265 |||||||||| ||||||||| |||||||||| | ||||| || |||||||||| |||||||||| CGTAGTTGAT TGAGTTCTGT GGTGTTTTGA TCTCGAACTC AATCAATCAT TCATTTGCAT 180 TTCGTTGGTG TCTCCCACCT ACGTTTCTCT TCGTTTTTCT TCTCTTTTTT TAAGCAACCA 60325 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGTTGGTG TCTCCCTCCT ACGTTTCTCT TCGTTTTTCT TCTCTTTTTT TAAGCAACCA 240 ATTCATTGGT GATTAAGTTT ACATGTCAAT GGAACTCAAC CAATTTTAAT TTTGCTTGAT 60385 |||||||||| |||||||||| ||||||| || |||||||||| ||||||| || |||||||||| ATTCATTGGT GATTAAGTTT ACATGTC-AT GGAACTCAAC CAATTTTTAT TTTGCTTGAT 299 TTGATCAGCT TTTTTCAAAA C--A-AAACA AAA-A-AAAA TTAAAATCGT TTTCATAAAT 60440 |||||||||| |||||||||| | | ||||| ||| | |||| ||||| |||| |||||||||| TTGATCAGCT TTTTTCAAAA CAAACAAACA AAAGATAAAA TTAAATTCGT TTTCATAAAT 359 TAAAAAAAA 60449 ||||||||| TAAAAAAAA 368 hqPGS_C09HBa0099P03.1-2+_SGN-E373718+ (60086 60449) ******************************************************************************** EST sequence 1 +strand 789 n (File: SGN-E547294+) 1 GTTTGTCATA GCTGTATTCG CAGCCATCAT TGCAAGTCAA GCTTTGATTT CCGGGACATT 61 CGCTATAATC CAGCAATCTC TGGCTTTAGG ATGCTTTCCT CGTGTTAAAA TCGTGCATAC 121 ATCAAAGAAA CATCATGGAC AAATCTACAT TCCTGAAATC AATAACCTTC TCATGGTCGC 181 TTGTGTTCTT ACCATTATCG GATTCAAGAC TACTGAAAAG CTTAGCAATG CTTATGGAAT 241 GGCAGTGGTG TTTGTGATGT TCCTAACATC GTGCTTCCTC ATACTAGTCA TGATCTTGAT 301 ATGGAAAACC AACATTCTTC TTATTATCGT CTATATTCTA ATCATTGTTT CGGTTGAGCT 361 TGTATTCCTA AGCGCAGTCC TTTACAAGTT TGAACAAGGT GGTTACCTCC CTGTGGCTTT 421 AGCTCTGTTC CTAATGTTTA TCATGTACGT ATGGAACTAT GTGTACCGTA AGAAGTATCA 481 CTACGAGCTA GAACACAAGA TCTCTCCCGA AAAAGTTAAA GAAACATTGG ATGCAACCAG 541 TTCACATCGC CTTCCAGGTC TTGCCATTTT CTACTCTGAA CTAGTCCACG GAATCCCCCC 601 AATCTTCAAG CATTATGTTG AGAATGTACC TGCTTTACAC TCTGTCCTCG TGTTCGCTTC 661 TGTCAAATCA CTTCCCATAA GCAAAGTTCC ACTAGAAGAA AGGTTCCTCT TCAGAAGGGT 721 GAAACCATAT GACCTCTATG TGTTCCGTTG TGTGATACGT TATGGATACA ATGAAATGCG 781 CAATGAGGA Predicted gene structure (within gDNA segment 61621 to 63734): Exon 1 62221 62456 ( 236 n); cDNA 1 236 ( 236 n); score: 0.992 Intron 1 62457 62571 ( 115 n); Pd: 0.962 (s: 0.98), Pa: 0.996 (s: 0.98) Exon 2 62572 63124 ( 553 n); cDNA 237 789 ( 553 n); score: 0.996 MATCH C09HBa0099P03.1-2+ SGN-E547294+ 0.995 789 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E547294+ (62221 62456,62572 63124) Alignment (genomic DNA sequence = upper lines): GTTTGTCATA GCTGTATTCG CAGCCATCAT TGCAAGTCAA GCTTTGATTT CCGGGACATT 62280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTCATA GCTGTATTCG CAGCCATCAT TGCAAGTCAA GCTTTGATTT CCGGGACATT 60 CGCTATAATC CAGCAATCTC TGGCTTTAGG ATGCTTTCCT CGTGTTAAAA TCGTGCATAC 62340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTATAATC CAGCAATCTC TGGCTTTAGG ATGCTTTCCT CGTGTTAAAA TCGTGCATAC 120 ATCAAAGAAA CATCATGGAC AAATCTACAT TCCTGAAATC AATAACCTTC TCATGATCGC 62400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ATCAAAGAAA CATCATGGAC AAATCTACAT TCCTGAAATC AATAACCTTC TCATGGTCGC 180 TTGTGTTCTT ACCACTATCG GATTCAAGAC TACTGAAAAG CTTAGCAATG CTTATGGTAA 62460 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||| TTGTGTTCTT ACCATTATCG GATTCAAGAC TACTGAAAAG CTTAGCAATG CTTATG.... 236 AGGCCACTTA ACTCTATTTC TTCTACGGAG TGAAATAAAC ATGTAAAAAG TGCAGGGGAC 62520 .......... .......... .......... .......... .......... .......... 236 TTGCCTTCTT TTCTATATTA TTAACTCGAT CACTCTATTG CTTGATTACA GGAATAGCAG 62580 |||| |||| .......... .......... .......... .......... .......... .GAATGGCAG 245 TGGTGTTTGT GATGTTCCTA ACATCGTGCT TCCTCATACT AGTCATGATC TTGATATGGA 62640 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTGT GATGTTCCTA ACATCGTGCT TCCTCATACT AGTCATGATC TTGATATGGA 305 AAACCAACAT TCTTCTTATT ATCGTCTATA TTCTAATCAT TGTTTCGGTT GAGCTTGTAT 62700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCAACAT TCTTCTTATT ATCGTCTATA TTCTAATCAT TGTTTCGGTT GAGCTTGTAT 365 ACCTAAGCGC AGTCCTTTAC AAGTTTGAAC AAGGTGGTTA CCTCCCTGTG GCTTTAGCTC 62760 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTAAGCGC AGTCCTTTAC AAGTTTGAAC AAGGTGGTTA CCTCCCTGTG GCTTTAGCTC 425 TGTTCCTAAT GTTTATCATG TACGTATGGA ACTATGTGTA CCGTAAGAAG TATCACTACG 62820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCCTAAT GTTTATCATG TACGTATGGA ACTATGTGTA CCGTAAGAAG TATCACTACG 485 AGCTAGAACA CAAGATCTCT CCCGAAAAAG TTAAAGAAAC ATTGGATGCA ACCAGTTCAC 62880 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAGAACA CAAGATCTCT CCCGAAAAAG TTAAAGAAAC ATTGGATGCA ACCAGTTCAC 545 ATCGCCTTCC AGGTCTTGCC ATTTTCTACT CTGAACTAGT CCACGGAATC CCCCCAATCT 62940 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGCCTTCC AGGTCTTGCC ATTTTCTACT CTGAACTAGT CCACGGAATC CCCCCAATCT 605 TCAAGCATTA TGTTGAGAAT GTACCTGCTT TACACTCTGT CCTCGTGTTC GCTTCTGTCA 63000 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGCATTA TGTTGAGAAT GTACCTGCTT TACACTCTGT CCTCGTGTTC GCTTCTGTCA 665 AATCACTTCC CATAAGCAAA GTTCCACTAG AAGAAAGGTT CCTCTTCAGA AGGGTGAAAC 63060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCACTTCC CATAAGCAAA GTTCCACTAG AAGAAAGGTT CCTCTTCAGA AGGGTGAAAC 725 CATATGACCT CTATGTGTTC CGTTGTGTGA TACGTTATGG ATACAATGAA ATGCGCAATG 63120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATGACCT CTATGTGTTC CGTTGTGTGA TACGTTATGG ATACAATGAA ATGCGCAATG 785 AGGA 63124 |||| AGGA 789 hqPGS_C09HBa0099P03.1-2+_SGN-E547294+ (62221 62456,62572 63124) ******************************************************************************** EST sequence 67 -strand 825 n (File: SGN-E547736-) 1 TATGTGTTCC GTTGTGTGAT ACGTTATGGA TACAATGAAA TGCGCAATGA GGAAGAGCCT 61 ATTGAGAAGT TATTGGTAGA AAGGCTAAAG AACTACATCA AGGAAGATTA CATGTTCTCA 121 GTTGCAGCAA ATGGAGACAA TCAAGGAGAA ACTGCCTCCT TGATTGAGAA AGACGTCGAA 181 GTACTTGAGA GAGCTTCCAA CATGGGAGTG GTTCATTTGG TTGGAGAACA AGACGTCGTC 241 GCGTGCAAGG GGTCTGGTGT AACCAAAAGA ATGGTGATCA ACTATGCATA CAATTTCCTC 301 AAGAGGAACT TAAGACAGAG TAGTAACAAA GTATTCGATA TCCCAACGAA ACGAATGCTC 361 AAAGTTGGAA TGACATGTGA GCTTTAGGGT GATTATTTTC TCTAAAAATT TCTTTTTAAG 421 GTTTAAAATA AATGTGCATT GAGTTGAAGG GAACAAGGGA GAAGGCACCA TACATGTTTC 481 AACTTCCATC ATCAAAAGGT GCTTGCACAA GAAAAAATAA TGTCTTTTTT TTTAATTTCT 541 TAGTTTTCAG TTTGTTTTGT TTGTTTGGAT TTTGTATGAG ATAAGCTAAG CTAAGCCTGA 601 TTTTGTAAGA GAATAAGCTA AGTATTTGTA TTTTGTTTTT TCTTGTTTCA AAGAAAAGAG 661 AAGATCAAGA TATGTCTAGA TAAAAAAACA ACATAGGTGT AGTTGTTTTT GACTAGCAAA 721 ACATTTTTGT TATTACCTTG TAATGTCTTG TAAAAGATTG TCAGTTTATA CATGATAATA 781 ATAACTAATC TAAGAATAAA TAGTTTATGA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 62462 to 65026): Exon 1 63072 63876 ( 805 n); cDNA 1 806 ( 806 n); score: 0.966 PPA cDNA 810 825 MATCH C09HBa0099P03.1-2+ SGN-E547736- 0.966 805 0.976 C PGS_C09HBa0099P03.1-2+_SGN-E547736- (63072 63876) Alignment (genomic DNA sequence = upper lines): TATGTGTTCC GTTGTGTGAT ACGTTATGGA TACAATGAAA TGCGCAATGA GGAAGAGCCT 63131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTGTTCC GTTGTGTGAT ACGTTATGGA TACAATGAAA TGCGCAATGA GGAAGAGCCT 60 ATCGAGAAGT TATTGGTAGA AAGGCTAAAG AACTACATCA AGGAAGATTA CATGTTCTCA 63191 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGAAGT TATTGGTAGA AAGGCTAAAG AACTACATCA AGGAAGATTA CATGTTCTCA 120 GTTGCAGCAA ATGGAGACAA TCAAGGAGAA ACTGCTTCCT TGATTGAGAA AGACGTCGAA 63251 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GTTGCAGCAA ATGGAGACAA TCAAGGAGAA ACTGCCTCCT TGATTGAGAA AGACGTCGAA 180 GTACTTGAGA GAGCTTCCAA CATGGGAGTG GTTCATTTGG TTGGAGAACA AGACGTTGTC 63311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GTACTTGAGA GAGCTTCCAA CATGGGAGTG GTTCATTTGG TTGGAGAACA AGACGTCGTC 240 GCGTGCAAGG GGTCTGGTGT AACCAAAAGA ATGGTGATCA ACTACGCATA CAATTTCCTC 63371 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GCGTGCAAGG GGTCTGGTGT AACCAAAAGA ATGGTGATCA ACTATGCATA CAATTTCCTC 300 AAGAGGAACT TAAGACAGAG TAGTAACAAA GTATTCGATA TCCCAACGAA GCGAATGCTC 63431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGAGGAACT TAAGACAGAG TAGTAACAAA GTATTCGATA TCCCAACGAA ACGAATGCTC 360 AAAGTTGGAA TGACATGTGA GCTTTAGGGT GATTATTTTC TCTAAAAA-A AAATTGTAAG 63490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| || |||| AAAGTTGGAA TGACATGTGA GCTTTAGGGT GATTATTTTC TCTAAAAATT TCTTTTTAAG 420 GTTTAAAATA AATGTGCATA GAGTTGAAGG GAACAAGGGA GAAGGCACCA TATATGTTTC 63550 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GTTTAAAATA AATGTGCATT GAGTTGAAGG GAACAAGGGA GAAGGCACCA TACATGTTTC 480 AACTTCCATC ATCAAAAGGT GCTTGCACAA GAAAAAATAA TGTTCTTTTT GTTAATTTCT 63610 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| ||||||||| AACTTCCATC ATCAAAAGGT GCTTGCACAA GAAAAAATAA TGTCTTTTTT TTTAATTTCT 540 TAGTTTTCAA TTTG-TTTGT TTGTTTGGAT TTTGTATGAG ATAAGCTAAG CTAAGCCTGA 63669 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTTTCAG TTTGTTTTGT TTGTTTGGAT TTTGTATGAG ATAAGCTAAG CTAAGCCTGA 600 TTTTGTAAGA GAATAAGCTA AGTATTTGTA TTTTGTTTTT TTCTTGTTTC AAAGAAAAGA 63729 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTTTGTAAGA GAATAAGCTA AGTATTTGTA TTTTG-TTTT TTCTTGTTTC AAAGAAAAGA 659 GAAGATCAAG ATATGTCTAG ATAAAAAAAC AACATAGGTG TAGTTGTTTT TGACTAGCAA 63789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATCAAG ATATGTCTAG ATAAAAAAAC AACATAGGTG TAGTTGTTTT TGACTAGCAA 719 AACATTTTTG TTTTTACCTT GTAATATCTT GTAAAAGATT GTCAGTTCAT ACATAATAAT 63849 |||||||||| || ||||||| ||||| |||| |||||||||| ||||||| || |||| ||||| AACATTTTTG TTATTACCTT GTAATGTCTT GTAAAAGATT GTCAGTTTAT ACATGATAAT 779 AATAATTAAT CTAAGAATAA ATAGTTT 63876 ||||| |||| |||||||||| ||||||| AATAACTAAT CTAAGAATAA ATAGTTT 806 hqPGS_C09HBa0099P03.1-2+_SGN-E547736- (63072 63876) ******************************************************************************** EST sequence 65 -strand 824 n (File: SGN-E547293-) 1 ATACGTTATG GATACAATGA AATGCGCAAT GAGGAAGAGC CTATTGAGAA GTTATGGTAG 61 AAAGGCTAAA GAACTACATC AAGGAAGATT ACATGTTCTC AGTTGCAGCA AATGGAGACA 121 ATCAAGGAGA AACTGCCTCC TTGATTGAGA AAGACGTCGA AGTACTTGAG AGAGCTTCCA 181 ACATGGGAGT GGTTCATTTG GTTGGAGAAC AAGACGTCGT CGCGTGCAAG GGGTCTGGTG 241 TAACCAAAAG AATGGTGATC AACTATGCAT ACAATTTCCT CAAGAGGAAC TTAAGACAGA 301 GTAGTAACAA AGTATTCGAT ATCCCAACGA AACGAATGCT CAAAGTTGGA ATGACATGTG 361 AGCTTTAGGG TGATTATTTT CTCTAAAAAT TTCTTTTTAA GGTTTAAAAT AAATGTGCAT 421 TGAGTTGAAG GGAACAAGGG AGAAGGCACC ATACATGTTT CAACTTCCAT CATCAAAAGG 481 TGCTTGCACA AGAAAAAATA ATGTCTTTTT TTTTAATTTC TTAGTTTTCA GTTTGTTTTG 541 TTTGTTTGGA TTTTGTATGA GATAAGCTAA GCTAAGCCTG ATTTTGTAAG AGAATAAGCT 601 AAGTATTTGT ATTTTGTTTT TTCTTGTTTC AAAGAAAAGA GAAGATCAAG ATATGTCTAG 661 ATAAAAAAAC AACATAGGTG TAGTTGTTTT TGACTAGCAA AACATTTTTG TTATTACCTT 721 GTAATGTCTT GTAAAAGATT GTCAGTTTAT ACATGATAAT AATAACTAAT CTAAGAATAA 781 ATAGTTTATA GAAAAAAAAA AAAAAAAAAC TCGAGGGGGG CCCG Predicted gene structure (within gDNA segment 62480 to 65206): Exon 1 63090 63882 ( 793 n); cDNA 1 793 ( 793 n); score: 0.965 PPA cDNA 794 810 MATCH C09HBa0099P03.1-2+ SGN-E547293- 0.965 793 0.962 C PGS_C09HBa0099P03.1-2+_SGN-E547293- (63090 63882) Alignment (genomic DNA sequence = upper lines): ATACGTTATG GATACAATGA AATGCGCAAT GAGGAAGAGC CTATCGAGAA GTTATTGGTA 63149 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||| ||||| ATACGTTATG GATACAATGA AATGCGCAAT GAGGAAGAGC CTATTGAGAA GTTA-TGGTA 59 GAAAGGCTAA AGAACTACAT CAAGGAAGAT TACATGTTCT CAGTTGCAGC AAATGGAGAC 63209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGCTAA AGAACTACAT CAAGGAAGAT TACATGTTCT CAGTTGCAGC AAATGGAGAC 119 AATCAAGGAG AAACTGCTTC CTTGATTGAG AAAGACGTCG AAGTACTTGA GAGAGCTTCC 63269 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AATCAAGGAG AAACTGCCTC CTTGATTGAG AAAGACGTCG AAGTACTTGA GAGAGCTTCC 179 AACATGGGAG TGGTTCATTT GGTTGGAGAA CAAGACGTTG TCGCGTGCAA GGGGTCTGGT 63329 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AACATGGGAG TGGTTCATTT GGTTGGAGAA CAAGACGTCG TCGCGTGCAA GGGGTCTGGT 239 GTAACCAAAA GAATGGTGAT CAACTACGCA TACAATTTCC TCAAGAGGAA CTTAAGACAG 63389 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GTAACCAAAA GAATGGTGAT CAACTATGCA TACAATTTCC TCAAGAGGAA CTTAAGACAG 299 AGTAGTAACA AAGTATTCGA TATCCCAACG AAGCGAATGC TCAAAGTTGG AATGACATGT 63449 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AGTAGTAACA AAGTATTCGA TATCCCAACG AAACGAATGC TCAAAGTTGG AATGACATGT 359 GAGCTTTAGG GTGATTATTT TCTCTAAAAA -AAAATTGTA AGGTTTAAAA TAAATGTGCA 63508 |||||||||| |||||||||| |||||||||| || || |||||||||| |||||||||| GAGCTTTAGG GTGATTATTT TCTCTAAAAA TTTCTTTTTA AGGTTTAAAA TAAATGTGCA 419 TAGAGTTGAA GGGAACAAGG GAGAAGGCAC CATATATGTT TCAACTTCCA TCATCAAAAG 63568 | |||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTGAGTTGAA GGGAACAAGG GAGAAGGCAC CATACATGTT TCAACTTCCA TCATCAAAAG 479 GTGCTTGCAC AAGAAAAAAT AATGTTCTTT TTGTTAATTT CTTAGTTTTC AATTTG-TTT 63627 |||||||||| |||||||||| ||||| ||| || ||||||| |||||||||| | |||| ||| GTGCTTGCAC AAGAAAAAAT AATGTCTTTT TTTTTAATTT CTTAGTTTTC AGTTTGTTTT 539 GTTTGTTTGG ATTTTGTATG AGATAAGCTA AGCTAAGCCT GATTTTGTAA GAGAATAAGC 63687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTTTGG ATTTTGTATG AGATAAGCTA AGCTAAGCCT GATTTTGTAA GAGAATAAGC 599 TAAGTATTTG TATTTTGTTT TTTTCTTGTT TCAAAGAAAA GAGAAGATCA AGATATGTCT 63747 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TAAGTATTTG TATTTTG-TT TTTTCTTGTT TCAAAGAAAA GAGAAGATCA AGATATGTCT 658 AGATAAAAAA ACAACATAGG TGTAGTTGTT TTTGACTAGC AAAACATTTT TGTTTTTACC 63807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AGATAAAAAA ACAACATAGG TGTAGTTGTT TTTGACTAGC AAAACATTTT TGTTATTACC 718 TTGTAATATC TTGTAAAAGA TTGTCAGTTC ATACATAATA ATAATAATTA ATCTAAGAAT 63867 ||||||| || |||||||||| ||||||||| |||||| ||| ||||||| || |||||||||| TTGTAATGTC TTGTAAAAGA TTGTCAGTTT ATACATGATA ATAATAACTA ATCTAAGAAT 778 AAATAGTTTA TAGAA 63882 |||||||||| ||||| AAATAGTTTA TAGAA 793 hqPGS_C09HBa0099P03.1-2+_SGN-E547293- (63090 63882) ******************************************************************************** EST sequence 63 +strand 307 n (File: SGN-E546842+) 1 ATAATGTCTT TTTTTTTAAT TTCTTAGTTT TCAGTTTGTT TTGTTTGTTT GGATTTTGTA 61 TGAGATAAGC TAAGCTAAGC CTGATTTTGT AAGAGAATAA GCTAAGTATT TGTATTTTGT 121 TTTTTCTTGT TTCAAAGAAA AGAGAAGATC AAGATATGTC TAGATAAAAA AACAACATAG 181 GTGTAGTTGT TTTTGACTAG CAAAACATTT TTGTTATTAC CTTGTAATGT CTTGTAAAAG 241 ATTGTCAGTT TATACATGAT AATAATAACT AATCTAAGAA TAAATAGTTT ATAGAAAAAA 301 AAAAAAA Predicted gene structure (within gDNA segment 62852 to 65016): Exon 1 63587 63883 ( 297 n); cDNA 1 297 ( 297 n); score: 0.958 PPA cDNA 298 307 MATCH C09HBa0099P03.1-2+ SGN-E546842+ 0.958 297 0.967 C PGS_C09HBa0099P03.1-2+_SGN-E546842+ (63587 63883) Alignment (genomic DNA sequence = upper lines): ATAATGTTCT TTTTGTTAAT TTCTTAGTTT TCAATTTG-T TTGTTTGTTT GGATTTTGTA 63645 ||||||| | |||| ||||| |||||||||| ||| |||| | |||||||||| |||||||||| ATAATGTCTT TTTTTTTAAT TTCTTAGTTT TCAGTTTGTT TTGTTTGTTT GGATTTTGTA 60 TGAGATAAGC TAAGCTAAGC CTGATTTTGT AAGAGAATAA GCTAAGTATT TGTATTTTGT 63705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGAGATAAGC TAAGCTAAGC CTGATTTTGT AAGAGAATAA GCTAAGTATT TGTATTTTG- 119 TTTTTTCTTG TTTCAAAGAA AAGAGAAGAT CAAGATATGT CTAGATAAAA AAACAACATA 63765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTCTTG TTTCAAAGAA AAGAGAAGAT CAAGATATGT CTAGATAAAA AAACAACATA 179 GGTGTAGTTG TTTTTGACTA GCAAAACATT TTTGTTTTTA CCTTGTAATA TCTTGTAAAA 63825 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| GGTGTAGTTG TTTTTGACTA GCAAAACATT TTTGTTATTA CCTTGTAATG TCTTGTAAAA 239 GATTGTCAGT TCATACATAA TAATAATAAT TAATCTAAGA ATAAATAGTT TATAGAAA 63883 |||||||||| | |||||| | ||||||||| |||||||||| |||||||||| |||||||| GATTGTCAGT TTATACATGA TAATAATAAC TAATCTAAGA ATAAATAGTT TATAGAAA 297 hqPGS_C09HBa0099P03.1-2+_SGN-E546842+ (63587 63883) ******************************************************************************** EST sequence 106 -strand 307 n (File: SGN-E546841-) 1 ATAATGTCTT TTTTTTTAAT TTCTTAGTTT TCAGTTTGTT TTGTTTGTTT GGATTTTGTA 61 TGAGATAAGC TAAGCTAAGC CTGATTTTGT AAGAGAATAA GCTAAGTATT TGTATTTTGT 121 TTTTTCTTGT TTCAAAGAAA AGAGAAGATC AAGATATGTC TAGATAAAAA AACAACATAG 181 GTGTAGTTGT TTTTGACTAG CAAAACATTT TTGTTATTAC CTTGTAATGT CTTGTAAAAG 241 ATTGTCAGTT TATACATGAT AATAATAACT AATCTAAGAA TAAATAGTTT ATAGAAAAAA 301 AAAAAAA Predicted gene structure (within gDNA segment 62842 to 65006): Exon 1 63587 63883 ( 297 n); cDNA 1 297 ( 297 n); score: 0.958 PPA cDNA 298 307 MATCH C09HBa0099P03.1-2+ SGN-E546841- 0.958 297 0.967 C PGS_C09HBa0099P03.1-2+_SGN-E546841- (63587 63883) Alignment (genomic DNA sequence = upper lines): ATAATGTTCT TTTTGTTAAT TTCTTAGTTT TCAATTTG-T TTGTTTGTTT GGATTTTGTA 63645 ||||||| | |||| ||||| |||||||||| ||| |||| | |||||||||| |||||||||| ATAATGTCTT TTTTTTTAAT TTCTTAGTTT TCAGTTTGTT TTGTTTGTTT GGATTTTGTA 60 TGAGATAAGC TAAGCTAAGC CTGATTTTGT AAGAGAATAA GCTAAGTATT TGTATTTTGT 63705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGAGATAAGC TAAGCTAAGC CTGATTTTGT AAGAGAATAA GCTAAGTATT TGTATTTTG- 119 TTTTTTCTTG TTTCAAAGAA AAGAGAAGAT CAAGATATGT CTAGATAAAA AAACAACATA 63765 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTCTTG TTTCAAAGAA AAGAGAAGAT CAAGATATGT CTAGATAAAA AAACAACATA 179 GGTGTAGTTG TTTTTGACTA GCAAAACATT TTTGTTTTTA CCTTGTAATA TCTTGTAAAA 63825 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| |||||||||| GGTGTAGTTG TTTTTGACTA GCAAAACATT TTTGTTATTA CCTTGTAATG TCTTGTAAAA 239 GATTGTCAGT TCATACATAA TAATAATAAT TAATCTAAGA ATAAATAGTT TATAGAAA 63883 |||||||||| | |||||| | ||||||||| |||||||||| |||||||||| |||||||| GATTGTCAGT TTATACATGA TAATAATAAC TAATCTAAGA ATAAATAGTT TATAGAAA 297 hqPGS_C09HBa0099P03.1-2+_SGN-E546841- (63587 63883) ******************************************************************************** EST sequence 99 -strand 481 n (File: SGN-E208613-) 1 TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 61 ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACGCCAT TCCAATGTCT 121 TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA TATCTGGTCG 181 AGTATTGTTA GCAAGATGCA CTAGTGCCCT GATTGCACCA AGATAGAGTT TCATCACCAA 241 GAAACTCATC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGACA AGTGATCTCA 301 TAATCATTGG GGTACTCAAT GAATGCGATA TATCCACATA AAATTGCATC AAAATTTTTC 361 AGTGTATGTG CACTGTTAGA CAAATATTTT ATTTGTCAAA TTAACAATCT GTAGGTCAAG 421 ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGACAATTA GGATCATTCT 481 T Predicted gene structure (within gDNA segment 68309 to 71880): Exon 1 70647 71127 ( 481 n); cDNA 1 481 ( 481 n); score: 0.913 MATCH C09HBa0099P03.1-2+ SGN-E208613- 0.913 481 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E208613- (70647 71127) Alignment (genomic DNA sequence = upper lines): TAAATATTAT GCATCTGCGT AATCAATCAA TTTTGTCTTG GATTCCTCGG GATAGAATAA 70706 |||||| | |||||||||| || |||||| || || ||| ||||| | || ||||||||| TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 60 ACTCATAACT ATGGTCCTTC GAGGATATTC AATCATGTGC TCAACACCAT TTCAATGTCC 70766 || ||| | ||||||| || || ||||| || ||||| | ||| |||| | ||||||| ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACGCCAT TCCAATGTCT 120 TTTTATCGGG GAGAAACTGA ATCTTGCCAG TAAATTTACT GCAAAACAAA TATCTGGTCA 70826 |||| | ||| ||| |||||| |||||||||| || | ||||| |||||||| | ||||||||| TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA TATCTGGTCG 180 AATATTGTTA GTAAGATGCA CTAGTGCCCT GATTGCACCA AGATAGAGTT TCATCACCAA 70886 | |||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTGTTA GCAAGATGCA CTAGTGCCCT GATTGCACCA AGATAGAGTT TCATCACCAA 240 GAAACTGTTC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGTCA AGTGATCTCA 70946 |||||| || |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GAAACTCATC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGACA AGTGATCTCA 300 TAATCATTGG GGTACTCAAT GAATGCGAGA TATCCACATA AAATTGCATC AAAATTTTTC 71006 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TAATCATTGG GGTACTCAAT GAATGCGATA TATCCACATA AAATTGCATC AAAATTTTTC 360 AGTGTATGTG CACTGTTAGA CAAATATTTT ATTTGTCAAA TTAACAATCT GTAGGTCTAG 71066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || AGTGTATGTG CACTGTTAGA CAAATATTTT ATTTGTCAAA TTAACAATCT GTAGGTCAAG 420 ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGAAAATTA GGGTCATTCT 71126 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGACAATTA GGATCATTCT 480 T 71127 | T 481 hqPGS_C09HBa0099P03.1-2+_SGN-E208613- (70647 71127) ******************************************************************************** EST sequence 97 -strand 409 n (File: SGN-E289962-) 1 AGTAAATTTA CTGCAAAACA AATATCTGGA ATAATATTGT TAGTAAGATG CACTAGTGCC 61 CTGATTGCAC CAAGATAGAG TTTCATCACC AAGAAACTCA TCATCCTTCT TTTGAGATCA 121 AACTGAATCA TCATTTATGT CAAGTAATCT CATAATCATT GGGGTACTCA ATGAATGCGA 181 TTTATTCATA TAAAATTGCA TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT 241 TCATTTGTCA AATTATCAAT CTGTAGGTCA AGGCAAAATT TTGTCTTACC AAGACCTTTT 301 CATAAAAATA CAAGGACAAT TAGGGTCATT CTTTTGTACC ATTTTTCTTC CTTGACTATT 361 TCAATCCATA TAAGAATTCT TGAAGCTTTA TTGGATAAGT TTCTTTCAA Predicted gene structure (within gDNA segment 70185 to 71929): Exon 1 70795 71203 ( 409 n); cDNA 1 409 ( 409 n); score: 0.956 MATCH C09HBa0099P03.1-2+ SGN-E289962- 0.956 409 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E289962- (70795 71203) Alignment (genomic DNA sequence = upper lines): AGTAAATTTA CTGCAAAACA AATATCTGGT CAAATATTGT TAGTAAGATG CACTAGTGCC 70854 |||||||||| |||||||||| ||||||||| |||||||| |||||||||| |||||||||| AGTAAATTTA CTGCAAAACA AATATCTGGA ATAATATTGT TAGTAAGATG CACTAGTGCC 60 CTGATTGCAC CAAGATAGAG TTTCATCACC AAGAAACTGT TCATCCTTCT TTTGAGATCA 70914 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| CTGATTGCAC CAAGATAGAG TTTCATCACC AAGAAACTCA TCATCCTTCT TTTGAGATCA 120 AACTGAATCA TCATTTATGT CAAGTGATCT CATAATCATT GGGGTACTCA ATGAATGCGA 70974 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AACTGAATCA TCATTTATGT CAAGTAATCT CATAATCATT GGGGTACTCA ATGAATGCGA 180 GATATCCACA TAAAATTGCA TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT 71034 ||| || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTCATA TAAAATTGCA TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT 240 TTATTTGTCA AATTAACAAT CTGTAGGTCT AGACAAAATT TTGTCTTACC AAGACCTTTT 71094 | |||||||| ||||| |||| ||||||||| || ||||||| |||||||||| |||||||||| TCATTTGTCA AATTATCAAT CTGTAGGTCA AGGCAAAATT TTGTCTTACC AAGACCTTTT 300 CATAAAAATA CAAGGAAAAT TAGGGTCATT CTTTTGTACC CTTTTTCTTC CTTGACTATT 71154 |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| |||||||||| CATAAAAATA CAAGGACAAT TAGGGTCATT CTTTTGTACC ATTTTTCTTC CTTGACTATT 360 TCAATCCATA TAAGGATTCT TGAAGCTTTA TTGGAAAAGT TTCTTTCAA 71203 |||||||||| |||| ||||| |||||||||| ||||| |||| ||||||||| TCAATCCATA TAAGAATTCT TGAAGCTTTA TTGGATAAGT TTCTTTCAA 409 hqPGS_C09HBa0099P03.1-2+_SGN-E289962- (70795 71203) ******************************************************************************** EST sequence 85 -strand 677 n (File: SGN-E391540-) 1 GACAAGTGAT CTCATAATCA TTGGGGTACT CAATGAATGC GATATATCCA CATAAAATTG 61 CATCAAAATT TTTCAGTGTA TGTGCACTGT TAGACAAATA TTTTATTTGT CAAATTAACA 121 ATCTGTAGGT CAAGACAAAA TTTTGTCTTA CCAAGACCTT TTCATAAAAA TACAAGGACA 181 ATTAGGATCA TTCTTTTGTA CCCTTTTCTT CCTTGACTAT TTCAATCCAT ATAAGGATTC 241 TTGAAGCTTT ATTGAAAAAG TTTCTTTCAA ACTCTTGTAT GCTTCAGACA CCTCGATTGT 301 TTCAAGGATT TTCATATAAC CTTCATTGTC TAGCTAGACA TTACAATTAT TCATTACATG 361 CATTCAAGCT TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 421 AAAACATCTC CAATAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGACACAAAC 481 CGTATTTGAT ATCTTACGGT TATATTATTG CATAATAATT TATTTGTACC CCACTGACAT 541 TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 601 ACTTGAATTG TGCATTTTAC TTGGTCAACC ATTAATCTGT CCACACTATA TGACAGATTT 661 GAATTCAAGA TCCTCGT Predicted gene structure (within gDNA segment 70305 to 72228): Exon 1 70935 71608 ( 674 n); cDNA 3 675 ( 673 n); score: 0.967 MATCH C09HBa0099P03.1-2+ SGN-E391540- 0.967 674 0.996 C PGS_C09HBa0099P03.1-2+_SGN-E391540- (70935 71608) Alignment (genomic DNA sequence = upper lines): CAAGTGATCT CATAATCATT GGGGTACTCA ATGAATGCGA GATATCCACA TAAAATTGCA 70994 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAAGTGATCT CATAATCATT GGGGTACTCA ATGAATGCGA TATATCCACA TAAAATTGCA 62 TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT TTATTTGTCA AATTAACAAT 71054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAATTTT TCAGTGTATG TGCACTGTTA GACAAATATT TTATTTGTCA AATTAACAAT 122 CTGTAGGTCT AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGAAAAT 71114 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 182 TAGGGTCATT CTTTTGTACC CTTTTTCTTC CTTGACTATT TCAATCCATA TAAGGATTCT 71174 |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TAGGATCATT CTTTTGTACC C-TTTTCTTC CTTGACTATT TCAATCCATA TAAGGATTCT 241 TGAAGCTTTA TTGGAAAAGT TTCTTTCAAA CTCTTATATG CTTCAGACAC CTCGATTGTT 71234 |||||||||| ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| TGAAGCTTTA TTGAAAAAGT TTCTTTCAAA CTCTTGTATG CTTCAGACAC CTCGATTGTT 301 TCAAGAATTT TCATATAACC TTCATTGTCT AGCTAGACAT TACAATTATT CATTTACATG 71294 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TCAAGGATTT TCATATAACC TTCATTGTCT AGCTAGACAT TACAATTATT CA-TTACATG 360 CATTCAAG-T TTTCATATGT TGCCAGATCA AAACAAACCT CATTTCATCC ACCAAAGGAG 71353 |||||||| | |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| CATTCAAGCT TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 420 AAAACATCTC CACTAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGGCACAAAC 71413 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| || ||||||| AAAACATCTC CAATAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGACACAAAC 480 CGTATTTGAT ATCTTACGGT TATACTATCG CATAATAATT TATTTGTACC CCACTGACAT 71473 |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| |||||||||| CGTATTTGAT ATCTTACGGT TATATTATTG CATAATAATT TATTTGTACC CCACTGACAT 540 TATATCTTGA TTTATGGACT ATCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 71533 |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 600 AATTGAATTG TGCATTTTAC TTGGCCAACC ATTTATCTGT TCACACTATA TGACAGATTT 71593 | |||||||| |||||||||| |||| ||||| ||| |||||| ||||||||| |||||||||| ACTTGAATTG TGCATTTTAC TTGGTCAACC ATTAATCTGT CCACACTATA TGACAGATTT 660 GAATTCAAGA TCCTC 71608 |||||||||| ||||| GAATTCAAGA TCCTC 675 hqPGS_C09HBa0099P03.1-2+_SGN-E391540- (70935 71608) ******************************************************************************** EST sequence 86 -strand 582 n (File: SGN-E267707-) 1 TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 61 TTGTCAAATT AACAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 121 AAAATACAAG GACAATTAGG ATCATTCTTT TGTACCCTTT TCTTCCTTGA CTATTTCAAT 181 CCATATAAGG ATTCTTGAAG CTTTATTGAA AAAGTTTCTT TCAAACTCTT GTATGCTTCA 241 GACACCTCGA TTGTTTCAAG GATTTTCATA TAACCTTCAT TGTCTAGCTA GACATTACAA 301 TTATTCATTA CATGCATTCA AGCTTTTCAT ATGTTGCCAG ATCAAAACAA ACCTCATTGC 361 ATCCACCAAA GGAGAAAACA TCTCCAATAA TGTCAGGATT TTTGCGATAA ACCTTTATGC 421 CCCAAGACAC AAACCGTATT TGATATCTTA CGGTTATATT ATTGCATAAT AATTTATTTG 481 TACCCCACTG ACATTATACC TTGATTTATG GACTACCAGT CCAAAATGTC ACTTTTCTAA 541 GTGAAACAAA ATATACTTGA ATTGTGCATT TTACTTGGTC AA Predicted gene structure (within gDNA segment 70369 to 72197): Exon 1 70979 71561 ( 583 n); cDNA 1 582 ( 582 n); score: 0.967 MATCH C09HBa0099P03.1-2+ SGN-E267707- 0.967 583 1.002 C PGS_C09HBa0099P03.1-2+_SGN-E267707- (70979 71561) Alignment (genomic DNA sequence = upper lines): TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 71038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCACATAAA ATTGCATCAA AATTTTTCAG TGTATGTGCA CTGTTAGACA AATATTTTAT 60 TTGTCAAATT AACAATCTGT AGGTCTAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 71098 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTGTCAAATT AACAATCTGT AGGTCAAGAC AAAATTTTGT CTTACCAAGA CCTTTTCATA 120 AAAATACAAG GAAAATTAGG GTCATTCTTT TGTACCCTTT TTCTTCCTTG ACTATTTCAA 71158 |||||||||| || ||||||| ||||||||| ||||||| || |||||||||| |||||||||| AAAATACAAG GACAATTAGG ATCATTCTTT TGTACCC-TT TTCTTCCTTG ACTATTTCAA 179 TCCATATAAG GATTCTTGAA GCTTTATTGG AAAAGTTTCT TTCAAACTCT TATATGCTTC 71218 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| | |||||||| TCCATATAAG GATTCTTGAA GCTTTATTGA AAAAGTTTCT TTCAAACTCT TGTATGCTTC 239 AGACACCTCG ATTGTTTCAA GAATTTTCAT ATAACCTTCA TTGTCTAGCT AGACATTACA 71278 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| AGACACCTCG ATTGTTTCAA GGATTTTCAT ATAACCTTCA TTGTCTAGCT AGACATTACA 299 ATTATTCATT TACATGCATT CAAG-TTTTC ATATGTTGCC AGATCAAAAC AAACCTCATT 71337 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ATTATTCA-T TACATGCATT CAAGCTTTTC ATATGTTGCC AGATCAAAAC AAACCTCATT 358 TCATCCACCA AAGGAGAAAA CATCTCCACT AATGTCAGGA TTTTTGCGAT AAACCTTTAT 71397 ||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GCATCCACCA AAGGAGAAAA CATCTCCAAT AATGTCAGGA TTTTTGCGAT AAACCTTTAT 418 GCCCCAAGGC ACAAACCGTA TTTGATATCT TACGGTTATA CTATCGCATA ATAATTTATT 71457 |||||||| | |||||||||| |||||||||| |||||||||| ||| ||||| |||||||||| GCCCCAAGAC ACAAACCGTA TTTGATATCT TACGGTTATA TTATTGCATA ATAATTTATT 478 TGTACCCCAC TGACATTATA TCTTGATTTA TGGACTATCA GTCCAAAATG TCACTTTTCT 71517 |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| TGTACCCCAC TGACATTATA CCTTGATTTA TGGACTACCA GTCCAAAATG TCACTTTTCT 538 AAGTGAAACA AAATATAATT GAATTGTGCA TTTTACTTGG CCAA 71561 |||||||||| ||||||| || |||||||||| |||||||||| ||| AAGTGAAACA AAATATACTT GAATTGTGCA TTTTACTTGG TCAA 582 hqPGS_C09HBa0099P03.1-2+_SGN-E267707- (70979 71561) ******************************************************************************** EST sequence 84 -strand 554 n (File: SGN-E205808-) 1 CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 61 TAGGATCATT CTTTTGTACC CTTTTCTTCC TTGACTATTT CAATCCATAT AAGGATTCTT 121 GAAGCTTTAT TGAAAAAGTT TCTTTCAAAC TCTTGTATGC TTCAGACACC TCGATTGTTT 181 CAAGGATTTT CATATAACCT TCATTGTCTA GCTAGACATT ACAATTATTC ATTACATGCA 241 TTCAAGCTTT TCATATGTTG CCAGATCAAA ACAAACCTCA TTGCATCCAC CAAAGGAGAA 301 AACATCTCCA ATAATGTCAG GATTTTTGCG ATAAACCTTT ATGCCCCAAG ACACAAACCG 361 TATTTGATAT CTTACGGTTA TATTATTGCA TAATAATTTA TTTGTACCCC ACTGACATTA 421 TACCTTGATT TATGGACTAC CAGTCCAAAA TGTCACTTTT CTAAGTGAAA CAAAATATAC 481 TTGAATTGTG CATTTTACTT GGTCAACCAT TAATCTGTCC ACACTATATG ACAGATTTGA 541 ATTCAAGATC CTCG Predicted gene structure (within gDNA segment 70355 to 72218): Exon 1 71055 71608 ( 554 n); cDNA 1 553 ( 553 n); score: 0.961 MATCH C09HBa0099P03.1-2+ SGN-E205808- 0.961 554 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E205808- (71055 71608) Alignment (genomic DNA sequence = upper lines): CTGTAGGTCT AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGAAAAT 71114 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CTGTAGGTCA AGACAAAATT TTGTCTTACC AAGACCTTTT CATAAAAATA CAAGGACAAT 60 TAGGGTCATT CTTTTGTACC CTTTTTCTTC CTTGACTATT TCAATCCATA TAAGGATTCT 71174 |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TAGGATCATT CTTTTGTACC C-TTTTCTTC CTTGACTATT TCAATCCATA TAAGGATTCT 119 TGAAGCTTTA TTGGAAAAGT TTCTTTCAAA CTCTTATATG CTTCAGACAC CTCGATTGTT 71234 |||||||||| ||| |||||| |||||||||| ||||| |||| |||||||||| |||||||||| TGAAGCTTTA TTGAAAAAGT TTCTTTCAAA CTCTTGTATG CTTCAGACAC CTCGATTGTT 179 TCAAGAATTT TCATATAACC TTCATTGTCT AGCTAGACAT TACAATTATT CATTTACATG 71294 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TCAAGGATTT TCATATAACC TTCATTGTCT AGCTAGACAT TACAATTATT CA-TTACATG 238 CATTCAAG-T TTTCATATGT TGCCAGATCA AAACAAACCT CATTTCATCC ACCAAAGGAG 71353 |||||||| | |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| CATTCAAGCT TTTCATATGT TGCCAGATCA AAACAAACCT CATTGCATCC ACCAAAGGAG 298 AAAACATCTC CACTAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGGCACAAAC 71413 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| || ||||||| AAAACATCTC CAATAATGTC AGGATTTTTG CGATAAACCT TTATGCCCCA AGACACAAAC 358 CGTATTTGAT ATCTTACGGT TATACTATCG CATAATAATT TATTTGTACC CCACTGACAT 71473 |||||||||| |||||||||| |||| ||| | |||||||||| |||||||||| |||||||||| CGTATTTGAT ATCTTACGGT TATATTATTG CATAATAATT TATTTGTACC CCACTGACAT 418 TATATCTTGA TTTATGGACT ATCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 71533 |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TATACCTTGA TTTATGGACT ACCAGTCCAA AATGTCACTT TTCTAAGTGA AACAAAATAT 478 AATTGAATTG TGCATTTTAC TTGGCCAACC ATTTATCTGT TCACACTATA TGACAGATTT 71593 | |||||||| |||||||||| |||| ||||| ||| |||||| ||||||||| |||||||||| ACTTGAATTG TGCATTTTAC TTGGTCAACC ATTAATCTGT CCACACTATA TGACAGATTT 538 GAATTCAAGA TCCTC 71608 |||||||||| ||||| GAATTCAAGA TCCTC 553 hqPGS_C09HBa0099P03.1-2+_SGN-E205808- (71055 71608) ******************************************************************************** EST sequence 81 -strand 454 n (File: SGN-E202657-) 1 ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGAAAA AGTTTCTTTC AAACTCTTGT 61 ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCATTG TCTAGCTAGA 121 CATTACAATT ATTCATTACA TGCATTCAAG CTTTTCATAT GTTGCCAGAT CAAATCAAAC 181 CTCATTGCAT CCACCAAAGG AGAAAACATC TCCAATAATG TCAGGATTTT TGCGATAAAC 241 CTTTATGCCC CAAGAAGCAA CCCGTATTTG ATATCTTACG GTTATATTAT TGCATAATAA 301 TTTATTTGTA CCCCACTGAC ATTATACCTT GATTTATGGA CTACCAGTCC AAAATGTCAC 361 TTTTTTAAGT GAAACAAAAT ATACTTGAAT TGTGCATTTT ACTTGGTCAA CCATTAATCT 421 GTCCACACTA TATGACAGAT TTGAATTCAA GATC Predicted gene structure (within gDNA segment 70542 to 72205): Exon 1 71152 71605 ( 454 n); cDNA 1 454 ( 454 n); score: 0.950 MATCH C09HBa0099P03.1-2+ SGN-E202657- 0.950 454 1.000 C PGS_C09HBa0099P03.1-2+_SGN-E202657- (71152 71605) Alignment (genomic DNA sequence = upper lines): ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGGAAA AGTTTCTTTC AAACTCTTAT 71211 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||| | ATTTCAATCC ATATAAGGAT TCTTGAAGCT TTATTGAAAA AGTTTCTTTC AAACTCTTGT 60 ATGCTTCAGA CACCTCGATT GTTTCAAGAA TTTTCATATA ACCTTCATTG TCTAGCTAGA 71271 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ATGCTTCAGA CACCTCGATT GTTTCAAGGA TTTTCATATA ACCTTCATTG TCTAGCTAGA 120 CATTACAATT ATTCATTTAC ATGCATTCAA G-TTTTCATA TGTTGCCAGA TCAAAACAAA 71330 |||||||||| ||||| |||| |||||||||| | |||||||| |||||||||| ||||| |||| CATTACAATT ATTCA-TTAC ATGCATTCAA GCTTTTCATA TGTTGCCAGA TCAAATCAAA 179 CCTCATTTCA TCCACCAAAG GAGAAAACAT CTCCACTAAT GTCAGGATTT TTGCGATAAA 71390 ||||||| || |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CCTCATTGCA TCCACCAAAG GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA 239 CCTTTATGCC CCAAGGCACA AACCGTATTT GATATCTTAC GGTTATACTA TCGCATAATA 71450 |||||||||| ||||| || | |||||||| |||||||||| ||||||| || | |||||||| CCTTTATGCC CCAAGAAGCA ACCCGTATTT GATATCTTAC GGTTATATTA TTGCATAATA 299 ATTTATTTGT ACCCCACTGA CATTATATCT TGATTTATGG ACTATCAGTC CAAAATGTCA 71510 |||||||||| |||||||||| ||||||| || |||||||||| |||| ||||| |||||||||| ATTTATTTGT ACCCCACTGA CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA 359 CTTTTCTAAG TGAAACAAAA TATAATTGAA TTGTGCATTT TACTTGGCCA ACCATTTATC 71570 ||||| |||| |||||||||| |||| ||||| |||||||||| ||||||| || |||||| ||| CTTTTTTAAG TGAAACAAAA TATACTTGAA TTGTGCATTT TACTTGGTCA ACCATTAATC 419 TGTTCACACT ATATGACAGA TTTGAATTCA AGATC 71605 ||| |||||| |||||||||| |||||||||| ||||| TGTCCACACT ATATGACAGA TTTGAATTCA AGATC 454 hqPGS_C09HBa0099P03.1-2+_SGN-E202657- (71152 71605) ******************************************************************************** EST sequence 40 +strand 664 n (File: SGN-E273497+) 1 TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCATTACAAT TTTTCATTAC 61 ATGCATTCAA GTTTTTCATA TGTTGCCAGA TCAAAACAAA CCTCATTGCA TCCACCAAAG 121 GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA CCTTTATGCC CCAAGGCACA 181 AACCGTATTT GATATCTTAC GGTTATACTA TCACATAATA ATTTATTTGT ACCCCACTGA 241 CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA CTTTTCTAAG TGAAACAAAA 301 TATACTTGAA TTGTGCATTT TACTTGGCTA ACCATTTATC TGTTCACACT ATATGACAGA 361 TTTGAATTCA AGATCCTCAT CACAATTTAT ATCATTGAGC GCTACCTCAT ATCAAAGATA 421 CCGTCGACGG TTATTTGATA TCGATTCCAA CAAGACATAA CTTATCGAGA TCTCTTCAAT 481 TTTTTTCATT ATTTCAGGTA CCTGAACCTT TTTCAAGATT TTATGAAGTG TTATGTCAAT 541 GTGCTCCTTT ATAGCACTTG CCTCATTATC ATGACCATAT TGATCATTTG CTCCTTCCTT 601 CTTTAAGGAA TTTTATATTT GGAATCAATT GGTCTATTAC GCTTTCGGCG TATCATAAAC 661 TCTG Predicted gene structure (within gDNA segment 70128 to 72681): Exon 1 71216 71891 ( 676 n); cDNA 1 664 ( 664 n); score: 0.936 MATCH C09HBa0099P03.1-2+ SGN-E273497+ 0.936 676 1.018 C PGS_C09HBa0099P03.1-2+_SGN-E273497+ (71216 71891) Alignment (genomic DNA sequence = upper lines): TTCAGACACC TCGATTGTTT CAAGAATTTT CATATAACCT TCATTGTCTA GCTAGACATT 71275 |||||||||| | |||||||| |||| ||||| |||||||||| ||| | || | | | | TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCA---T-TA -C---A-A-T 50 ACAATTATTC ATTTACATGC ATTCAAG-TT TTCATATGTT GCCAGATCAA AACAAACCTC 71334 || ||| | |||||||| ||||||| || |||||||||| |||||||||| |||||||||| ----TT-TTC A-TTACATGC ATTCAAGTTT TTCATATGTT GCCAGATCAA AACAAACCTC 104 ATTTCATCCA CCAAAGGAGA AAACATCTCC ACTAATGTCA GGATTTTTGC GATAAACCTT 71394 ||| |||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ATTGCATCCA CCAAAGGAGA AAACATCTCC AATAATGTCA GGATTTTTGC GATAAACCTT 164 TATGCCCCAA GGCACAAACC GTATTTGATA TCTTACGGTT ATACTATCGC ATAATAATTT 71454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TATGCCCCAA GGCACAAACC GTATTTGATA TCTTACGGTT ATACTATCAC ATAATAATTT 224 ATTTGTACCC CACTGACATT ATATCTTGAT TTATGGACTA TCAGTCCAAA ATGTCACTTT 71514 |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| ATTTGTACCC CACTGACATT ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT 284 TCTAAGTGAA ACAAAATATA ATTGAATTGT GCATTTTACT TGGCCAACCA TTTATCTGTT 71574 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| TCTAAGTGAA ACAAAATATA CTTGAATTGT GCATTTTACT TGGCTAACCA TTTATCTGTT 344 CACACTATAT GACAGATTTG AATTCAAGAT CCTCATCACA ATTTATATCA TTGAGCGCTA 71634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACACTATAT GACAGATTTG AATTCAAGAT CCTCATCACA ATTTATATCA TTGAGCGCTA 404 CCTCATATCA AAGATACCTT CGACGGTTAT TTGATATCGA TTCCAACAGG ACATAACTTA 71694 |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | |||||||||| CCTCATATCA AAGATACCGT CGACGGTTAT TTGATATCGA TTCCAACAAG ACATAACTTA 464 TCGAGATCTC TTC-A--TTT TTCATTATTT CAGGTACCTG AACCTTTTTC AAAATTTTAT 71751 |||||||||| ||| | ||| |||||||||| |||||||||| |||||||||| || ||||||| TCGAGATCTC TTCAATTTTT TTCATTATTT CAGGTACCTG AACCTTTTTC AAGATTTTAT 524 GAAGTGTTAT GTCAATGTGC TCTTTTATAG CACTTGCCTC ATTATCATGA CCATATTGAT 71811 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GAAGTGTTAT GTCAATGTGC TCCTTTATAG CACTTGCCTC ATTATCATGA CCATATTGAT 584 CATTTGCTCC TTCCTTCTTC AAGGAATTTT ATATTTGGAA TCGATTGGTC TATTACGCTT 71871 |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CATTTGCTCC TTCCTTCTTT AAGGAATTTT ATATTTGGAA TCAATTGGTC TATTACGCTT 644 CCGGCGTATC ATAGACTCTG 71891 ||||||||| ||| |||||| TCGGCGTATC ATAAACTCTG 664 hqPGS_C09HBa0099P03.1-2+_SGN-E273497+ (71216 71891) ******************************************************************************** EST sequence 41 +strand 388 n (File: SGN-E273387+) 1 TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCATTACAAT TTTTCATTAC 61 ATGCATTCAA GTTTTTCATA TGTTGCCAGA TCAAAACAAA CCTCATTGCA TCCACCAAAG 121 GAGAAAACAT CTCCAATAAT GTCAGGATTT TTGCGATAAA CCTTTATGCC CCAAGGCACA 181 AACCGTATTT GATATCTTAC GGTTATACTA TCACATAATA ATTTATTTGT ACCCCACTGA 241 CATTATACCT TGATTTATGG ACTACCAGTC CAAAATGTCA CTTTTCTAAG TGAAACAAAA 301 TATACTTGAA TTGTGCATTT TACTTGGCTA ACCATTTATC TGTTCACACT ATATGACAGA 361 TTTGAATTCA AGATCCTCAT CACAATTT Predicted gene structure (within gDNA segment 70128 to 72228): Exon 1 71216 71618 ( 403 n); cDNA 1 388 ( 388 n); score: 0.932 MATCH C09HBa0099P03.1-2+ SGN-E273387+ 0.932 403 1.039 C PGS_C09HBa0099P03.1-2+_SGN-E273387+ (71216 71618) Alignment (genomic DNA sequence = upper lines): TTCAGACACC TCGATTGTTT CAAGAATTTT CATATAACCT TCATTGTCTA GCTAGACATT 71275 |||||||||| | |||||||| |||| ||||| |||||||||| ||| | || | | | | TTCAGACACC TGGATTGTTT CAAGGATTTT CATATAACCT TCA---T-TA -C---A-A-T 50 ACAATTATTC ATTTACATGC ATTCAAG-TT TTCATATGTT GCCAGATCAA AACAAACCTC 71334 || ||| | |||||||| ||||||| || |||||||||| |||||||||| |||||||||| ----TT-TTC A-TTACATGC ATTCAAGTTT TTCATATGTT GCCAGATCAA AACAAACCTC 104 ATTTCATCCA CCAAAGGAGA AAACATCTCC ACTAATGTCA GGATTTTTGC GATAAACCTT 71394 ||| |||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ATTGCATCCA CCAAAGGAGA AAACATCTCC AATAATGTCA GGATTTTTGC GATAAACCTT 164 TATGCCCCAA GGCACAAACC GTATTTGATA TCTTACGGTT ATACTATCGC ATAATAATTT 71454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TATGCCCCAA GGCACAAACC GTATTTGATA TCTTACGGTT ATACTATCAC ATAATAATTT 224 ATTTGTACCC CACTGACATT ATATCTTGAT TTATGGACTA TCAGTCCAAA ATGTCACTTT 71514 |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| ATTTGTACCC CACTGACATT ATACCTTGAT TTATGGACTA CCAGTCCAAA ATGTCACTTT 284 TCTAAGTGAA ACAAAATATA ATTGAATTGT GCATTTTACT TGGCCAACCA TTTATCTGTT 71574 |||||||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| TCTAAGTGAA ACAAAATATA CTTGAATTGT GCATTTTACT TGGCTAACCA TTTATCTGTT 344 CACACTATAT GACAGATTTG AATTCAAGAT CCTCATCACA ATTT 71618 |||||||||| |||||||||| |||||||||| |||||||||| |||| CACACTATAT GACAGATTTG AATTCAAGAT CCTCATCACA ATTT 388 hqPGS_C09HBa0099P03.1-2+_SGN-E273387+ (71216 71618) ******************************************************************************** EST sequence 51 -strand 421 n (File: SGN-E250127-) 1 TAATATCCAT TAGGAAGTAG CTTTCTTTCG CACAAATATA TAATATTGTT CAAATGCTTT 61 ATGAAAGTGA TGAAGCACTT GCATCATTTA ACCATAAGAA AAAAACTCAA ATATGTTATC 121 AAATTTGTTT AAAAAAGACT CATTTATGTC ATTCATTATG AAAAATATTT GAGGGTAAGA 181 CGGTAGATTC AAGTTCTATC GCACCAAGAG GGTAAGACAT CAATTCGAGT TTTGATGCAC 241 CATAATGATA AGGTATTGGG TTCAAGTCCC ATAGAATTAT GGCCTAATGT GCCTTGTATG 301 GATAAGACAT TGAGTTTGAG TCTCCATGCA CCAAATTGAT GATAAGATGA TGACTGAGGC 361 AAAATAATAT ATTTCCGATG AAAAGTATTG AAATTCATCA TATTAAATTT GCTCCATTCC 421 T Predicted gene structure (within gDNA segment 76353 to 72339): Exon 1 75603 75569 ( 35 n); cDNA 112 144 ( 33 n); score: 0.714 Intron 1 75568 74795 ( 774 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 74794 74766 ( 29 n); cDNA 145 171 ( 27 n); score: 0.655 Intron 2 74765 74248 ( 518 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 74247 74167 ( 81 n); cDNA 172 251 ( 80 n); score: 0.827 Intron 3 74166 74090 ( 77 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 4 74089 73985 ( 105 n); cDNA 252 358 ( 107 n); score: 0.819 MATCH C09HBa0099P03.1-2- SGN-E250127- 0.823 250 0.594 C PGS_C09HBa0099P03.1-2-_SGN-E250127- (75603 75569,74794 74766,74247 74167,74089 73985) Alignment (genomic DNA sequence = upper lines): TATTTGATCT CATCTTATTA TAAAAAAAAC TAATAATTGT TCCAGATATT CGTGGCATAA 75544 ||| | ||| || || || ||||||| || | || TATGTTATCA AAT-TTGTT- TAAAAAAGAC TCATT..... .......... .......... 144 CAAAATAATT GATACACATG CAATGTTTTA TCTTCTAGAA AACACTTGAA ATTATTTAAT 75484 .......... .......... .......... .......... .......... .......... 144 AAAATCTTCT TAACTTGTTG AAGTGTATTG ATTAGAAGTG ATATGAAAAA GAAAAAAGAA 75424 .......... .......... .......... .......... .......... .......... 144 CATATGATAA CACCCATAAC TCTTTTGCAC CTCACCTATA TATTTTACTA ATTTCACAAT 75364 .......... .......... .......... .......... .......... .......... 144 TTTATTCTTT TAGTGTTTTT TTATTTTTAT TTCTACTTGA GCAAAAAATG ATATAAGTTT 75304 .......... .......... .......... .......... .......... .......... 144 CTGAAAGAAA AAAAAATAAA ACTTTATTAA AGAGGTATTT TTTATACTAT TGTTGATTAA 75244 .......... .......... .......... .......... .......... .......... 144 GAAAAACTAG GCACGAGAAT CACCGCTTAA ATATATAATT TTTAAATAAA GAGGTATTAT 75184 .......... .......... .......... .......... .......... .......... 144 TTGCGTATAA AAATATTTAC TTTGATATAA TTTTTAAATA TTTCTTATAT TTAAGTTTGA 75124 .......... .......... .......... .......... .......... .......... 144 AACTTAGAAT TTTGGATGGT TCCATAAATA TTATAGTCCA CATGTGTTGG TAATTATAAT 75064 .......... .......... .......... .......... .......... .......... 144 AAAACTCAAA TCAAAATTAA ATTAATATTG ATGCAAAAAG GAAATCTATT TAGCATTAAG 75004 .......... .......... .......... .......... .......... .......... 144 AATGACAATA ATATTAAATA TTTGTTCTTT GATTTTACGT TGATTTAGAC AATTGAAATA 74944 .......... .......... .......... .......... .......... .......... 144 CATAATCTAA TTTTAATTTT CTTTAATATT TAGTCATGTA ACTAATGCTT ATTTGTTATA 74884 .......... .......... .......... .......... .......... .......... 144 AATTCATTGA ATGAGTGGAT AGTCCATAAG GTTGGTACAT GAACAACCAT TCATATTCAC 74824 .......... .......... .......... .......... .......... .......... 144 TAGGTTACAT GAACCTTTTT GGATAAGAAT GTATCTATTT ACTATGATAC TTAATATGGT 74764 | | || ||| | ||||| | || | || .......... .......... .........T ATGTC-ATTC ATTATGAAAA ATATT-TG.. 171 AACCTTTGGA GTGATTTCTC ACTCTATAAA TAGGGTTGTT CATTCAGTAT TGTAATAGAT 74704 .......... .......... .......... .......... .......... .......... 171 ACATATGAGA CTTGAATACA CTTGAATAAG AAGAAAATTC CTCTTCTTCT ATATACTTCT 74644 .......... .......... .......... .......... .......... .......... 171 CTTATCTTCT TCTCTTTATG ATTATATTCT TATGAGCTTG ATTTTATAAC ACGTTATCAG 74584 .......... .......... .......... .......... .......... .......... 171 CACGAGTCTC TATCTAATTG AGAGTGGGTT CTTGTTTTTC TTTAGCTCAT ATTTTGGTTG 74524 .......... .......... .......... .......... .......... .......... 171 ATCTCGTTAT GAAGATCAAA GTATTATATG CATAAAATCA GGTATGTATT TTCTAAAATA 74464 .......... .......... .......... .......... .......... .......... 171 TTTTATGATT TAGAATAAAA TAGTATTCAA TCACTAATAA TTATCAGGAA CCGAAGACAT 74404 .......... .......... .......... .......... .......... .......... 171 ATACTACTAT TGGTTGAATA TGACATGCTA TACAAAACTT CTTAAATAGA AGAAGGTATA 74344 .......... .......... .......... .......... .......... .......... 171 AAATTTTAAT AGCATGAATT TGAATGTTAT TTTGATTGTT TTGAATGACT CAAAGGGTGA 74284 .......... .......... .......... .......... .......... .......... 171 GTCATGTTGT ACTTCGGTTT ATTATACCGT TGGTTAAGGG TAAGACGATG AATTCAAGTT 74224 |||| ||||||| | ||||||||| .......... .......... .......... ......AGGG TAAGACGGTA GATTCAAGTT 195 TCATCGCACC AAAAGGGTAA GACATCAGGT TAAAGTCCGG ATGCACCATA ATGAAAAATA 74164 |||||||| || ||||||| ||||||| | | ||| | |||||||||| |||| || CTATCGCACC AAGAGGGTAA GACATCA-AT TCGAGTTTTG ATGCACCATA ATGATAA... 251 TTTGAGGATA AGACGATAGA TTCAAGTTCT ATCGCACCAA AAGGGTAAGA CATCAATTTG 74104 .......... .......... .......... .......... .......... .......... 251 AGTTTTGATG CACCGCGATT GGGTTCAAGT CCCATAGAAT TATGGCGTAA CACGCCTTAT 74044 | ||| |||||||||| |||||||||| |||||| ||| ||||| | .......... ....GGTATT GGGTTCAAGT CCCATAGAAT TATGGCCTAA TGTGCCTTGT 297 ATGGATAAGA CATTGGGTTT GAG--TCAAT GCACCATAGT GATGATATAA TGATGACTAA 73986 |||||||||| ||||| |||| ||| || || |||||| | | ||||||| | |||||||| | ATGGATAAGA CATTGAGTTT GAGTCTCCAT GCACCAAATT GATGATAAGA TGATGACTGA 357 G 73985 | G 358 hqPGS_C09HBa0099P03.1-2-_SGN-E250127- (75603 75569,74794 74766,74247 74167,74089 73985) ******************************************************************************** EST sequence 11 -strand 546 n (File: SGN-E248730-) 1 GTTGACAAGT AACTTTGATT GTAAATCTTC ATAATCAATT TCCCCATTAA CTAAAGTGTT 61 GATAGTTTGT AGCTCCATTC GATACATTCT TGCTGCTTTG AAAATCGAGT AATGTGAATC 121 TTTTGATGCA TATAATATCC ATTAGGAAGT AGCTCTCTTC TGCACAAATA TATAATATTG 181 TTCAAATGCT TTATGAAAGT GATGAAGCAC TTGCATCATT TAACCATAAG AAAAAAACTC 241 AAATATGTTA TCAAATTTGT TTAAAAAAGA CTCATTTATG TCATTCATTA TGAAAAATAT 301 TTGAGGGTAA GACGGTAGAT TCAAGTTCTA TCGCACCAAG AGGGTAAGAC ATCAATTCGA 361 GTTTTGATGC ACCATAATGA TAAGGTATTG GGTTCAAGTC CCATAGAATT ATGGCCTAAT 421 GTGCCTTGTA TGGATAAGAC ATTGAGTTTG AGTCTCCATG CACCAAATTG ATGATAAGAT 481 GATGACTGAG GCAAAATAAT ATATTTTTGA TGAAAAGTAT TGAAATTCAT CATATTAAAT 541 TTGCTC Predicted gene structure (within gDNA segment 77673 to 72409): Exon 1 76260 76175 ( 86 n); cDNA 156 242 ( 87 n); score: 0.570 Intron 1 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0) Exon 2 75604 75569 ( 36 n); cDNA 243 276 ( 34 n); score: 0.694 Intron 2 75568 74795 ( 774 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 74794 74766 ( 29 n); cDNA 277 303 ( 27 n); score: 0.655 Intron 3 74765 74248 ( 518 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.88) Exon 4 74247 74167 ( 81 n); cDNA 304 383 ( 80 n); score: 0.827 Intron 4 74166 74090 ( 77 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 5 74089 73985 ( 105 n); cDNA 384 490 ( 107 n); score: 0.819 MATCH C09HBa0099P03.1-2- SGN-E248730- 0.743 337 0.617 C PGS_C09HBa0099P03.1-2-_SGN-E248730- (76260 76175,75604 75569,74794 74766,74247 74167,74089 73985) Alignment (genomic DNA sequence = upper lines): TCTTCTGCAC TACTA-ATGA AGAAAAGGGA TTACTTTTTG TGTGAGTTGG AGAAAGTTGA 76202 |||||||||| | || || | | | |||| || | | || || | ||| TCTTCTGCAC AAATATATAA TATTGTTCAA ATGCTTTATG AAAGTGATGA AGCA-CTTGC 214 ATGAATTTAC TATAA-AAAA AAACAAATAT CCAATTCCCA TTATTTACTT GTTAAATTAC 76143 || | || || |||| |||| |||| | ATCATTTAAC CATAAGAAAA AAACTCAA.. .......... .......... .......... 242 GAGTGAACAA TGAACCCAAT TGAATAATTT AACAAAATAA ATTTGAGAAA AATGTTTGAA 76083 .......... .......... .......... .......... .......... .......... 242 AAACGTTTTA ATTTTGGTCG AAATTGATGT TACGAAATCA AATTTTATAG ATGATCTTTT 76023 .......... .......... .......... .......... .......... .......... 242 ACGTATTTTA AAGGTATATA TATGTGCCCA TGTGGACACA TTAATATTTA TAATGATACA 75963 .......... .......... .......... .......... .......... .......... 242 ATATTTGTGA TGTCCATGTG AATATATATA TATATATTTA AAATACACTA TCAAATAGAA 75903 .......... .......... .......... .......... .......... .......... 242 TAGGGATAAA AAATTATTTT CAAAATTCAA TATTATGACA ATAATCTCAA TTAAAATTTG 75843 .......... .......... .......... .......... .......... .......... 242 AATATATTTC AAATTTTTTT TTTCAATAAA TTTTAAAAGT TGGATCAAAC GTGTTACTGT 75783 .......... .......... .......... .......... .......... .......... 242 TAATATTAAC AAAGAAAAGA GTTCGTCGTA ATACTACTGA ATTATTGTCC TAAAAAAATG 75723 .......... .......... .......... .......... .......... .......... 242 GAGAAAAATT ATTGTAATGC ATTAATTACG GACAGATATT AGATAATGTA GACCCACCAT 75663 .......... .......... .......... .......... .......... .......... 242 TATATAAATT GACTATGTGA ATTGAAACAA AATGTCTAAA AAGGTTGTCA AATTCCAGGT 75603 | .......... .......... .......... .......... .......... ........AT 244 ATTTGATCTC ATCTTATTAT AAAAAAAACT AATAATTGTT CCAGATATTC GTGGCATAAC 75543 || | ||| || || || | |||||| ||| || ATGTTATCAA AT-TTGTT-T AAAAAAGACT CATT...... .......... .......... 276 AAAATAATTG ATACACATGC AATGTTTTAT CTTCTAGAAA ACACTTGAAA TTATTTAATA 75483 .......... .......... .......... .......... .......... .......... 276 AAATCTTCTT AACTTGTTGA AGTGTATTGA TTAGAAGTGA TATGAAAAAG AAAAAAGAAC 75423 .......... .......... .......... .......... .......... .......... 276 ATATGATAAC ACCCATAACT CTTTTGCACC TCACCTATAT ATTTTACTAA TTTCACAATT 75363 .......... .......... .......... .......... .......... .......... 276 TTATTCTTTT AGTGTTTTTT TATTTTTATT TCTACTTGAG CAAAAAATGA TATAAGTTTC 75303 .......... .......... .......... .......... .......... .......... 276 TGAAAGAAAA AAAAATAAAA CTTTATTAAA GAGGTATTTT TTATACTATT GTTGATTAAG 75243 .......... .......... .......... .......... .......... .......... 276 AAAAACTAGG CACGAGAATC ACCGCTTAAA TATATAATTT TTAAATAAAG AGGTATTATT 75183 .......... .......... .......... .......... .......... .......... 276 TGCGTATAAA AATATTTACT TTGATATAAT TTTTAAATAT TTCTTATATT TAAGTTTGAA 75123 .......... .......... .......... .......... .......... .......... 276 ACTTAGAATT TTGGATGGTT CCATAAATAT TATAGTCCAC ATGTGTTGGT AATTATAATA 75063 .......... .......... .......... .......... .......... .......... 276 AAACTCAAAT CAAAATTAAA TTAATATTGA TGCAAAAAGG AAATCTATTT AGCATTAAGA 75003 .......... .......... .......... .......... .......... .......... 276 ATGACAATAA TATTAAATAT TTGTTCTTTG ATTTTACGTT GATTTAGACA ATTGAAATAC 74943 .......... .......... .......... .......... .......... .......... 276 ATAATCTAAT TTTAATTTTC TTTAATATTT AGTCATGTAA CTAATGCTTA TTTGTTATAA 74883 .......... .......... .......... .......... .......... .......... 276 ATTCATTGAA TGAGTGGATA GTCCATAAGG TTGGTACATG AACAACCATT CATATTCACT 74823 .......... .......... .......... .......... .......... .......... 276 AGGTTACATG AACCTTTTTG GATAAGAATG TATCTATTTA CTATGATACT TAATATGGTA 74763 | | || ||| | ||||| | | || || .......... .......... ........TA TGTC-ATTCA TTATGAAAAA T-ATTTG... 303 ACCTTTGGAG TGATTTCTCA CTCTATAAAT AGGGTTGTTC ATTCAGTATT GTAATAGATA 74703 .......... .......... .......... .......... .......... .......... 303 CATATGAGAC TTGAATACAC TTGAATAAGA AGAAAATTCC TCTTCTTCTA TATACTTCTC 74643 .......... .......... .......... .......... .......... .......... 303 TTATCTTCTT CTCTTTATGA TTATATTCTT ATGAGCTTGA TTTTATAACA CGTTATCAGC 74583 .......... .......... .......... .......... .......... .......... 303 ACGAGTCTCT ATCTAATTGA GAGTGGGTTC TTGTTTTTCT TTAGCTCATA TTTTGGTTGA 74523 .......... .......... .......... .......... .......... .......... 303 TCTCGTTATG AAGATCAAAG TATTATATGC ATAAAATCAG GTATGTATTT TCTAAAATAT 74463 .......... .......... .......... .......... .......... .......... 303 TTTATGATTT AGAATAAAAT AGTATTCAAT CACTAATAAT TATCAGGAAC CGAAGACATA 74403 .......... .......... .......... .......... .......... .......... 303 TACTACTATT GGTTGAATAT GACATGCTAT ACAAAACTTC TTAAATAGAA GAAGGTATAA 74343 .......... .......... .......... .......... .......... .......... 303 AATTTTAATA GCATGAATTT GAATGTTATT TTGATTGTTT TGAATGACTC AAAGGGTGAG 74283 .......... .......... .......... .......... .......... .......... 303 TCATGTTGTA CTTCGGTTTA TTATACCGTT GGTTAAGGGT AAGACGATGA ATTCAAGTTT 74223 ||||| |||||| | ||||||||| .......... .......... .......... .....AGGGT AAGACGGTAG ATTCAAGTTC 328 CATCGCACCA AAAGGGTAAG ACATCAGGTT AAAGTCCGGA TGCACCATAA TGAAAAATAT 74163 ||||||||| | |||||||| |||||| || ||| || |||||||||| ||| || TATCGCACCA AGAGGGTAAG ACATCA-ATT CGAGTTTTGA TGCACCATAA TGATAA.... 383 TTGAGGATAA GACGATAGAT TCAAGTTCTA TCGCACCAAA AGGGTAAGAC ATCAATTTGA 74103 .......... .......... .......... .......... .......... .......... 383 GTTTTGATGC ACCGCGATTG GGTTCAAGTC CCATAGAATT ATGGCGTAAC ACGCCTTATA 74043 | |||| |||||||||| |||||||||| ||||| ||| ||||| || .......... ...GGTATTG GGTTCAAGTC CCATAGAATT ATGGCCTAAT GTGCCTTGTA 430 TGGATAAGAC ATTGGGTTTG AG--TCAATG CACCATAGTG ATGATATAAT GATGACTAAG 73985 |||||||||| |||| ||||| || || ||| ||||| | || |||||| || ||||||| || TGGATAAGAC ATTGAGTTTG AGTCTCCATG CACCAAATTG ATGATAAGAT GATGACTGAG 490 hqPGS_C09HBa0099P03.1-2-_SGN-E248730- (74247 74167,74089 73985) ******************************************************************************** EST sequence 18 -strand 314 n (File: SGN-E254688-) 1 CTCAAATATG TTATCAAATT TGTTTAAAAA AGACTCATTT ATGTCATTCA TTATGAAAAA 61 TATTTGAGGG TAAGACGGTA GATTCAAGTT CTATCGCACC AAGAGGGTAA GACATCAATT 121 CGAGTTTTGA TGCACCATAA TGATAAGGTA TTGGGTTCAA GTCCCATAGA ATTATGGCCT 181 AATGTGCCTT GTATGGATAA GACATTGAGT TTGAGTCTCC ATGCACCAAA TTGATGATAA 241 GATGATGACT GAGGCAAAAT AATACATTTT TGATGAAACG TATTGAAATT CATCATATTA 301 AATTTGCTCC ATTC Predicted gene structure (within gDNA segment 75303 to 72359): Exon 1 74245 74167 ( 79 n); cDNA 69 146 ( 78 n); score: 0.823 Intron 1 74166 74090 ( 77 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.86) Exon 2 74089 73985 ( 105 n); cDNA 147 253 ( 107 n); score: 0.819 MATCH C09HBa0099P03.1-2- SGN-E254688- 0.821 184 0.586 C PGS_C09HBa0099P03.1-2-_SGN-E254688- (74245 74167,74089 73985) Alignment (genomic DNA sequence = upper lines): GGTAAGACGA TGAATTCAAG TTTCATCGCA CCAAAAGGGT AAGACATCAG GTTAAAGTCC 74186 ||||||||| | ||||||| || |||||| |||| ||||| ||||||||| || ||| GGTAAGACGG TAGATTCAAG TTCTATCGCA CCAAGAGGGT AAGACATCA- ATTCGAGTTT 127 GGATGCACCA TAATGAAAAA TATTTGAGGA TAAGACGATA GATTCAAGTT CTATCGCACC 74126 ||||||||| |||||| || TGATGCACCA TAATGATAA. .......... .......... .......... .......... 146 AAAAGGGTAA GACATCAATT TGAGTTTTGA TGCACCGCGA TTGGGTTCAA GTCCCATAGA 74066 | | |||||||||| |||||||||| .......... .......... .......... ......GGTA TTGGGTTCAA GTCCCATAGA 170 ATTATGGCGT AACACGCCTT ATATGGATAA GACATTGGGT TTGAG--TCA ATGCACCATA 74008 |||||||| | || ||||| ||||||||| ||||||| || ||||| || |||||||| | ATTATGGCCT AATGTGCCTT GTATGGATAA GACATTGAGT TTGAGTCTCC ATGCACCAAA 230 GTGATGATAT AATGATGACT AAG 73985 |||||||| ||||||||| || TTGATGATAA GATGATGACT GAG 253 hqPGS_C09HBa0099P03.1-2-_SGN-E254688- (74245 74167,74089 73985) ******************************************************************************** EST sequence 33 -strand 676 n (File: SGN-E542836-) 1 AAAATGATGA CTAAGAAAAT CATTATATTT TTGATGAAAA TGTCTGAAAA TTCATCATAT 61 TGAATTTGCT CCATTCCTTG AAAAGAATGT GGTAGCAACA TGTGATAACT CTGAAATCCG 121 CCTGTTGACT TGCTCCATTC AATCATATGA ATGTGGTAGC AGTGAATGAT TAGTCTGAAA 181 GATGACAAAT AATTAATGAT ATGAATAAAG GCGTGGAAGG ACAGAATTAT AATAGTCATC 241 ATTGTGGTAA TGATAAAAGG AATAACAATA TGAGTTCTTC AAATAGTCCT TCAAAATGTG 301 AAGACAATTT TTATTATGAA AATGGTATGA AAAGTCATTA GACTTGTGAA TGTTGTCAAC 361 CCAATAACTT GACAAGTTTA TAAATCCTCT ATCATGATAT AAGAAGATAA AGTGATGGTA 421 CACTTTATCT TTCAAAGTGA TGTTGAGGTG TGTCATGGAA ATATGATGAA TTTTAAAGTC 481 ATGACAATGT GCTTATAATG CAAATTTATA AAGTACATAT GAATAATTAG TCCAATCTTT 541 GAAGAGAATG TGACTTGTAA TGAGTATCGT GAATGCTCGA CCATTCTATA AGAGAATGGG 601 TCCAGATGTG ATAAAATCAT TATGGGTTGG ATATATGTCA CAACTCACCT CTATAGAAGG 661 TTTGAAAAAA AAAAAA Predicted gene structure (within gDNA segment 75153 to 72639): Exon 1 73970 73340 ( 631 n); cDNA 43 674 ( 632 n); score: 0.910 MATCH C09HBa0099P03.1-2- SGN-E542836- 0.910 631 0.933 C PGS_C09HBa0099P03.1-2-_SGN-E542836- (73970 73340) Alignment (genomic DNA sequence = upper lines): TCTTGAAATT CGTCCTGTTG AATTTGCTCC ATTCCTTGAA AAGAATGTGG TAGCAACATA 73911 ||| ||||| | || | ||| |||||||||| |||||||||| |||||||||| ||||||||| TCTGAAAATT CATCATATTG AATTTGCTCC ATTCCTTGAA AAGAATGTGG TAGCAACATG 102 CGATAATTTT AAAAT-TGCA TGTTCACTTG CTCCATTCTA TCGTATGAAT GTGGTAGCAG 73852 ||||| | | |||| || |||| ||||| |||||||| | || ||||||| |||||||||| TGATAACTCT GAAATCCGCC TGTTGACTTG CTCCATTCAA TCATATGAAT GTGGTAGCAG 162 TAAATAGTTA GTCTGAAAGA TGACAAATGA TTAACGATAT GAAAAAAGGC ATGAAGGGAC 73792 | ||| ||| |||||||||| |||||||| | |||| ||||| ||| |||||| || | |||| TGAATGATTA GTCTGAAAGA TGACAAATAA TTAATGATAT GAATAAAGGC GTGGAAGGAC 222 GGAATTATAA TAGTCATCAT TGTGGTAATT ATAAAAGAAA GAACACTATG GGTTCTCCAA 73732 ||||||||| |||||||||| ||||||||| ||||||| || |||| |||| ||||| ||| AGAATTATAA TAGTCATCAT TGTGGTAATG ATAAAAGGAA TAACAATATG AGTTCTTCAA 282 ATAGTCCTTC GAAATGTGAA GACAGTTTTC ATTATCAAAA TGGTACGAAA GGTCATTAGA 73672 |||||||||| ||||||||| |||| |||| ||||| |||| ||||| |||| ||||||||| ATAGTCCTTC AAAATGTGAA GACAATTTTT ATTATGAAAA TGGTATGAAA AGTCATTAGA 342 CTTGTGAATG TTGTCAACCC AATAATTTGA CAAGTTTATA AATCCTCTAT CATGATACAA 73612 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||||||| || CTTGTGAATG TTGTCAACCC AATAACTTGA CAAGTTTATA AATCCTCTAT CATGATATAA 402 GAAAATAAAG TGATGGTACA CTTGATCATT CAAAATGATG TTGAGGTGTG TCATGGAAAT 73552 ||| |||||| |||||||||| ||| ||| || |||| ||||| |||||||||| |||||||||| GAAGATAAAG TGATGGTACA CTTTATCTTT CAAAGTGATG TTGAGGTGTG TCATGGAAAT 462 ATGATGAATT TTAAAGTCAT GACAATGTGC TTATAATGCA AATTGATGAA GTACATATAA 73492 |||||||||| |||||||||| |||||||||| |||||||||| |||| || || |||||||| | ATGATGAATT TTAAAGTCAT GACAATGTGC TTATAATGCA AATTTATAAA GTACATATGA 522 ATAATTAGTT CATTCCTTGA AGAGAATGTG ACTTATGATG AGTATCGTGA ATGCTCGACC 73432 ||||||||| || || |||| |||||||||| |||| | ||| |||||||||| |||||||||| ATAATTAGTC CAATCTTTGA AGAGAATGTG ACTTGTAATG AGTATCGTGA ATGCTCGACC 582 ATTCTATAAG AGAATGGGTC CAGATGTGAG CAAATCATTA TGGGTTGGAT ATATGTCACA 73372 |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| ATTCTATAAG AGAATGGGTC CAGATGTGAT AAAATCATTA TGGGTTGGAT ATATGTCACA 642 ACTCACCTCT ATAGAAGGTT TGAGAAAAAA AA 73340 |||||||||| |||||||||| ||| |||||| || ACTCACCTCT ATAGAAGGTT TGAAAAAAAA AA 674 hqPGS_C09HBa0099P03.1-2-_SGN-E542836- (73970 73340) ******************************************************************************** EST sequence 28 -strand 393 n (File: SGN-E204533-) 1 AATTTTTATT ATGAAAATGG TATGAAAAGT CATTAGACTT GTGAATGTTG TCAACCCAAT 61 AACTTGACAA GTTTATAAAT CCTCTATCAT GATATAAGAA GATAAAGTGA TGGTACACTT 121 TATCTTTCAA AGTGATGTTG AGGTGTGTCA TGGAAATATG ATGAATTTTA AAGTCATGAC 181 AATGTGCTTA TAATGCAAAT TTATAAAGTA CATATGAATA ATTAGTCCAA TCTTTGAAGA 241 GAATGTGACT TGTAATGAGT ATCGTGAATG CTCGACCATT CTATAAGAGA ATGGGTCCAG 301 ATGTGATAAA ATCATTATGG GTTGGATATA TGTCACAACT CACCTCTATA GAAGGTTTTG 361 AAAAAAAAAA AAAAAAAACT CGGACTAGTT CTC Predicted gene structure (within gDNA segment 74570 to 72401): Exon 1 73706 73355 ( 352 n); cDNA 3 354 ( 352 n); score: 0.943 PPA cDNA 361 379 MATCH C09HBa0099P03.1-2- SGN-E204533- 0.943 352 0.896 C PGS_C09HBa0099P03.1-2-_SGN-E204533- (73706 73355) Alignment (genomic DNA sequence = upper lines): TTTTCATTAT CAAAATGGTA CGAAAGGTCA TTAGACTTGT GAATGTTGTC AACCCAATAA 73647 |||| ||||| ||||||||| |||| |||| |||||||||| |||||||||| |||||||||| TTTTTATTAT GAAAATGGTA TGAAAAGTCA TTAGACTTGT GAATGTTGTC AACCCAATAA 62 TTTGACAAGT TTATAAATCC TCTATCATGA TACAAGAAAA TAAAGTGATG GTACACTTGA 73587 ||||||||| |||||||||| |||||||||| || ||||| | |||||||||| |||||||| | CTTGACAAGT TTATAAATCC TCTATCATGA TATAAGAAGA TAAAGTGATG GTACACTTTA 122 TCATTCAAAA TGATGTTGAG GTGTGTCATG GAAATATGAT GAATTTTAAA GTCATGACAA 73527 || |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTCAAAG TGATGTTGAG GTGTGTCATG GAAATATGAT GAATTTTAAA GTCATGACAA 182 TGTGCTTATA ATGCAAATTG ATGAAGTACA TATAAATAAT TAGTTCATTC CTTGAAGAGA 73467 |||||||||| ||||||||| || ||||||| ||| |||||| |||| || || ||||||||| TGTGCTTATA ATGCAAATTT ATAAAGTACA TATGAATAAT TAGTCCAATC TTTGAAGAGA 242 ATGTGACTTA TGATGAGTAT CGTGAATGCT CGACCATTCT ATAAGAGAAT GGGTCCAGAT 73407 ||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGACTTG TAATGAGTAT CGTGAATGCT CGACCATTCT ATAAGAGAAT GGGTCCAGAT 302 GTGAGCAAAT CATTATGGGT TGGATATATG TCACAACTCA CCTCTATAGA AG 73355 |||| |||| |||||||||| |||||||||| |||||||||| |||||||||| || GTGATAAAAT CATTATGGGT TGGATATATG TCACAACTCA CCTCTATAGA AG 354 hqPGS_C09HBa0099P03.1-2-_SGN-E204533- (73706 73355) ******************************************************************************** EST sequence 96 +strand 767 n (File: SGN-E354965+) 1 GATAAGACGA TAGATTCAAG TTCTATCTCA CCAAAAGGGT AAGACATCAA TTAGAGTTTT 61 GATACACCGT GATTGGGTTC AAGTTCCATA GAATTATGGC GTAACACGCC TTACATGGGT 121 AAGACATTGA GTTTGATCCA ATGCATAAAA TGATGACTAA GAAAAATAAT ATATTTTTGA 181 TGAAATGTCT TTAAATTCAT CATATTGAAT TTGCTCCATT TCTTGAAAAG AATATGGTAG 241 CAACATGTGA TAACTCTGAA ATCCACCTGT TGACTTGCTC CATTCAATCA TATGAATGTG 301 GTAGCAGTGA ATGATTAGTT TGAAAGATGA CAAATAATTA ATGATATAGA ATAAGGGAGT 361 GGAGGGAAAG AATTATAATA GTCATCATTG TGGTAATGAT AAAAGGAAGA ACACTATGAG 421 TTCTTCAAAT AGTCCTTCAA AATGTGAAGG CAACTTTTAT TATCAAAATG GTATGAAAGG 481 TTATTAGACT TGTCAATGTT GTCAACCCCA TAATTTGACA AGTTTATAAA TCCTCTATCA 541 TGACACAAGA AGATAAAGTG ATGGTACACT TCATCTTTCA AAGTGATGTT GAGGTGTGTC 601 ATGGAAATAT GATGAATTTT AAAGCCATGA CAATGTGCTT ATAATGCAAA TTTATGAAGT 661 ACATATAAAT AATTAGTTCA TTCCTTGAAG AGAATGTGAC TTGTGATGAG TATCGTGAAT 721 GCTCGACCAT TCTATAAAAG AATGGGTCCA AATGTGATAA AATCATT Predicted gene structure (within gDNA segment 74757 to 72513): Exon 1 74157 73393 ( 765 n); cDNA 1 767 ( 767 n); score: 0.884 MATCH C09HBa0099P03.1-2- SGN-E354965+ 0.884 765 0.997 C PGS_C09HBa0099P03.1-2-_SGN-E354965+ (74157 73393) Alignment (genomic DNA sequence = upper lines): GATAAGACGA TAGATTCAAG TTCTATCGCA CCAAAAGGGT AAGACATCAA TTTGAGTTTT 74098 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| || ||||||| GATAAGACGA TAGATTCAAG TTCTATCTCA CCAAAAGGGT AAGACATCAA TTAGAGTTTT 60 GATGCACCGC GATTGGGTTC AAGTCCCATA GAATTATGGC GTAACACGCC TTATATGGAT 74038 ||| ||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||| |||| | GATACACCGT GATTGGGTTC AAGTTCCATA GAATTATGGC GTAACACGCC TTACATGGGT 120 AAGACATTGG GTTTGAGTCA ATGCACCATA GTGATGA-TA TAATGATGAC TAAGGCTTTG 73979 ||||||||| |||||| || ||||| | | |||||| || | | | || |||| AAGACATTGA GTTTGATCCA ATGCA-TAAA ATGATGACTA AGAAAAATAA TATATTTTTG 179 ATGAAAAGTC TTGAAATTCG TCCTGTTGAA TTTGCTCCAT TCCTTGAAAA GAATGTGGTA 73919 |||||| ||| || |||||| || | ||||| |||||||||| | |||||||| |||| ||||| ATGAAATGTC TTTAAATTCA TCATATTGAA TTTGCTCCAT TTCTTGAAAA GAATATGGTA 239 GCAACATACG ATAATTTTAA AAT-TGCATG TTCACTTGCT CCATTCTATC GTATGAATGT 73860 ||||||| | |||| | | | ||| | || || ||||||| |||||| ||| ||||||||| GCAACATGTG ATAACTCTGA AATCCACCTG TTGACTTGCT CCATTCAATC ATATGAATGT 299 GGTAGCAGTA AATAGTTAGT CTGAAAGATG ACAAATGATT AACGATAT-G AAAAAAGGCA 73801 ||||||||| ||| ||||| ||||||||| |||||| ||| || ||||| | || || || GGTAGCAGTG AATGATTAGT TTGAAAGATG ACAAATAATT AATGATATAG AATAAGGGAG 359 TGAAGGGACG GAATTATAAT AGTCATCATT GTGGTAATTA TAAAAGAAAG AACACTATGG 73741 || ||||| |||||||||| |||||||||| |||||||| | |||||| ||| ||||||||| TGGAGGGAAA GAATTATAAT AGTCATCATT GTGGTAATGA TAAAAGGAAG AACACTATGA 419 GTTCTCCAAA TAGTCCTTCG AAATGTGAAG ACAGTTTTCA TTATCAAAAT GGTACGAAAG 73681 ||||| |||| ||||||||| |||||||||| || ||| | |||||||||| |||| ||||| GTTCTTCAAA TAGTCCTTCA AAATGTGAAG GCAACTTTTA TTATCAAAAT GGTATGAAAG 479 GTCATTAGAC TTGTGAATGT TGTCAACCCA ATAATTTGAC AAGTTTATAA ATCCTCTATC 73621 || ||||||| |||| ||||| ||||||||| |||||||||| |||||||||| |||||||||| GTTATTAGAC TTGTCAATGT TGTCAACCCC ATAATTTGAC AAGTTTATAA ATCCTCTATC 539 ATGATACAAG AAAATAAAGT GATGGTACAC TTGATCATTC AAAATGATGT TGAGGTGTGT 73561 |||| ||||| || ||||||| |||||||||| || ||| ||| ||| |||||| |||||||||| ATGACACAAG AAGATAAAGT GATGGTACAC TTCATCTTTC AAAGTGATGT TGAGGTGTGT 599 CATGGAAATA TGATGAATTT TAAAGTCATG ACAATGTGCT TATAATGCAA ATTGATGAAG 73501 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ||| |||||| CATGGAAATA TGATGAATTT TAAAGCCATG ACAATGTGCT TATAATGCAA ATTTATGAAG 659 TACATATAAA TAATTAGTTC ATTCCTTGAA GAGAATGTGA CTTATGATGA GTATCGTGAA 73441 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TACATATAAA TAATTAGTTC ATTCCTTGAA GAGAATGTGA CTTGTGATGA GTATCGTGAA 719 TGCTCGACCA TTCTATAAGA GAATGGGTCC AGATGTGAGC AAATCATT 73393 |||||||||| |||||||| | |||||||||| | |||||| |||||||| TGCTCGACCA TTCTATAAAA GAATGGGTCC AAATGTGATA AAATCATT 767 hqPGS_C09HBa0099P03.1-2-_SGN-E354965+ (74157 73393) ******************************************************************************** EST sequence 3 -strand 827 n (File: SGN-E261435-) 1 AGAATATTGG TGTAAATCCA TTTCGACTAC CAGAAATTGT AGCATCTGCG GAATTAATAT 61 ACTCAATTTT TGAGAGGGTG CTAACGTAAC TTCTCCTTGT TATCTGAACG CCACAAGACA 121 TTGGACATCC CAAGAATTTG TGCCCTGAAA TTGAAATACT TCCAATTGGT TTCTTGAAGG 181 TAATTTTTTT TGCATGTTTG ATAAATGGGA GAATTAGCCC ACATAATGCT GCATCGCAAT 241 GGATATAATA ATTGTCATTT GAATAACCAC AATTTTCAAG TGTTTGTATG ACGAAATCGA 301 GGTCATCAAT AGCTCCTTTG AAGGTTGTTC CAATATTGAT ATTGATGATA GCTGGTTTGT 361 TCTTGTTGAC AAGTAACTTT GATTGTAAAT CTTCATAATC AATTTCCCCA TTAACTAAAG 421 TGTTGATAGT TTGTAGCTCC ATTCGATACA TTCTTGCTGC TTTGAAAATC GAGTAATGTG 481 AATCTTTTGA TGCATATAAT ATCCATTAGG AAGTAGCTCT CTTCTGCACA AATATATAAT 541 ATTGTTCAAA TGCTTTATGA AAGTGATGAA GCACTTGCAT CATTTAACCA TAAGAAAAAA 601 ACTCAAATAT GTTATCAAAT TTGTTTAAAA AAGACTCATT TATGTCATTC ATTATGAAAA 661 ATATTTGAGG GTAAGACGGT AGATTCAAGT TCTATCGCAC CAAGAGGGTA AGACATCAAT 721 TCGAGTTTTG ATGCACCATA ATGATAAGGT ATTGGGTTCA AGTCCCATAG AATTATGGCC 781 TAATGTGCCT TGTATGGATA AGACATTGAG TTTGAGTCTC CATGCAC Predicted gene structure (within gDNA segment 80423 to 73239): Exon 1 80136 80114 ( 23 n); cDNA 441 461 ( 21 n); score: 0.652 Intron 1 80113 78532 (1582 n); Pd: 0.465 (s: 0), Pa: 0.470 (s: 0) Exon 2 78531 78519 ( 13 n); cDNA 462 473 ( 12 n); score: 0.615 Intron 2 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 3 78091 78087 ( 5 n); cDNA 474 478 ( 5 n); score: 1.000 Intron 3 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 76724 76683 ( 42 n); cDNA 479 519 ( 41 n); score: 0.643 Intron 4 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 5 76260 76175 ( 86 n); cDNA 520 606 ( 87 n); score: 0.570 Intron 5 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 6 75604 75559 ( 46 n); cDNA 607 649 ( 43 n); score: 0.630 Intron 6 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 7 74177 74090 ( 88 n); cDNA 650 737 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E261435- 0.759 303 0.366 C PGS_C09HBa0099P03.1-2-_SGN-E261435- (80136 80114,78531 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): ATTTGTGACA CACTTAGCAA GCTGTACTTT AACCCATCCA CATGGTAAAC ATTGTCAATT 80077 ||| | ||| ||| || ||| ATTCGATACA TTCTT-GC-T GCT....... .......... .......... .......... 461 GAATCTTCAA GAGATCTTCC TACTTTGCCA ACTCCCAAAA TGTACCCCTT CTTGCCATCA 80017 .......... .......... .......... .......... .......... .......... 461 CCAAATGAGA CACCTCCTCC TTGGAGGGTC TTGAGTGAGA GGAAGTTCTT TACATCACCA 79957 .......... .......... .......... .......... .......... .......... 461 GTCATATGTT TAGAGCAGCC ACTATCCATA TACCAACATT GTCTGCTGCT CCTCTCACTC 79897 .......... .......... .......... .......... .......... .......... 461 ACCTGCATCA AAAATCACTT GTTAAGCTTG GGAACTCATT TCAGCTTGAG TTCCCAGTAG 79837 .......... .......... .......... .......... .......... .......... 461 GCAAACAAAG GAGTGATCAG ATTGTACTTG GTCCAATATG GTAGACTTTG AATCTTTCTA 79777 .......... .......... .......... .......... .......... .......... 461 ACAAAGGACC TAGGAGCAGG AACAGATTTT TTCTTTGAAA ATCTGTGAGT TGAGACAGGA 79717 .......... .......... .......... .......... .......... .......... 461 TCTGTAGGAC CAGGTCTCTC ATTTGGTACA TTTTTTCTTT CAGCATACTT AAGAGTATCT 79657 .......... .......... .......... .......... .......... .......... 461 CTCACATGAG TTTCTCCAGC TAACACACTC ATTCTTCAGA TGTCCATTCT TACCACAATG 79597 .......... .......... .......... .......... .......... .......... 461 CAGACACAAT AGATTGTCAG ACACAAACAC ATACTTACTG TGAGGATTAT AAAGAGGACT 79537 .......... .......... .......... .......... .......... .......... 461 TATGTTCAGA CTTCTTAGTC CTTTCTTATT GAAATTACTC TGATTTGTCA CATTTGACAG 79477 .......... .......... .......... .......... .......... .......... 461 CAACTTTGAG GATTTGATCC ACTTAAGAGA ATTTTCAAGC TCTTTCTTAA ATTTCACAAC 79417 .......... .......... .......... .......... .......... .......... 461 ATCCTGTTCT AATTTGTTAC TCTTTTCAAG TGACAAACTA AGATTTTTCT CAGAGTTTTT 79357 .......... .......... .......... .......... .......... .......... 461 CAATTTTTCT TGAATTTCAG CTTGCAGACT ATTTGGCTTT CCATTCAGAT TTTCAGCTTC 79297 .......... .......... .......... .......... .......... .......... 461 TTCAGTAATC TGACACAACT GGTTCTTAAG TTCGGAGTTT TTTAACTCTA GAGACACCAT 79237 .......... .......... .......... .......... .......... .......... 461 TCTTGACATT GTGTCTTCAA ATTGACCTTT GTTTTCAGTT AAAATTTCAA GTTCAGCAAT 79177 .......... .......... .......... .......... .......... .......... 461 TATGGTATCT TTTTCAGATG TTAACTCTAT CACAGAATCT AACATGACTT TTGACAAGGT 79117 .......... .......... .......... .......... .......... .......... 461 TCTCAATTTT TTAAGAGAAT ACTTATCCAA GTCAATTTTC ATGTCAAGAA GAGTTACCTG 79057 .......... .......... .......... .......... .......... .......... 461 ATTGTCTTCT TCTTCATTTT CTGTGTGTGC CATAAGAGCA AACATTTCAT TGAAGACAGT 78997 .......... .......... .......... .......... .......... .......... 461 TTCCTCCTCA TGCACAGCAA CCATTGACAC ATCTTTTGGC TCATCAGGAT CTTCTGAGTC 78937 .......... .......... .......... .......... .......... .......... 461 ACTAGAAGAA TCCCCTCATG CAGCAAGAGC CCTTTTGACA ACCATATCAG CAGCAACTTT 78877 .......... .......... .......... .......... .......... .......... 461 ACGATCTCTG TTACCAAGTA CCAGGTCCCT TCTGTTTTCT TTGTCACCCC TGTGTTTTTG 78817 .......... .......... .......... .......... .......... .......... 461 ATGTTCCTTG TTTTCATTCT TGAGTAAAGG ACACTCTCTG ATGAAGTGCC CAGACTTTCC 78757 .......... .......... .......... .......... .......... .......... 461 ACACTTGTAG CAAGTATCCC CTTGAGCAGC ATTGCGAGTC CCATTTGTTC CTCTTTTATA 78697 .......... .......... .......... .......... .......... .......... 461 CATTTTGTTT TTTCTCACAA TCTTTTGAAA TCTACTGATG AGATAAGCCA TATCATCATC 78637 .......... .......... .......... .......... .......... .......... 461 ATCACTTGAA TCTTCATCTG ATTTATACTT CAACATCAAT GACTTGTCCT TCTTGGCTTC 78577 .......... .......... .......... .......... .......... .......... 461 CTTTTTTGAC AAATCATAGT TTCGATTCAT CTCATGTGTT TTAAGATTAC CAATCAAGGC 78517 | | |||| || .......... .......... .......... .......... .....TTGAA -AATCGAG.. 473 ATCCATGGTC AGCACCTTCA AGTCCTTGGC TTCTGTAATG GCATCAACTT TGCTCTCCCA 78457 .......... .......... .......... .......... .......... .......... 473 GGACTTTGGA AGAATTCAAA GCACTTTCCT GACTTGTTTG GTCATGCTTA TAGGTTCACC 78397 .......... .......... .......... .......... .......... .......... 473 CAAACTTCGT AGCTCTTTTG TAATGGAAGA CAACTTGGTG AACATGTCAT GTATAGTTTC 78337 .......... .......... .......... .......... .......... .......... 473 TCCTTCCTTC ATTTTGAAGT TCTCATATCG TGAGGTGAGC ATGTCAATCT TGGATTCTTT 78277 .......... .......... .......... .......... .......... .......... 473 GACTTGTTCA GTTCCTTCAT GTGCAGTCAA CAAGCAATCC CAAATTTCTT TAGCAGACTC 78217 .......... .......... .......... .......... .......... .......... 473 ACAGGCTGAC ACTCTGTTGT ACTCATCAGG TCCTATCCCA CAGACCAGAA GAGTTTTAGC 78157 .......... .......... .......... .......... .......... .......... 473 TTTGAAACCC TTTTCAATCT TTTTCCTGTC AGCATCATCA TATTTCTGCC TGGGCTTTGG 78097 .......... .......... .......... .......... .......... .......... 473 AACAGTAATG GTCTTTTCTC CATCCTTTAC TTCCATCATT GGAACAAAGG GTCCATCTAG 78037 ||||| .....TAATG .......... .......... .......... .......... .......... 478 TATAATATCC CATAACTCGC TATCTTCAGC CATGAGATAG TCGTGCATTC TAACTTTCCA 77977 .......... .......... .......... .......... .......... .......... 478 CCAACTGTAG AAATGTCCAT TGAAACGAGG AGGTCTGTGT GATGACTGAC CTTCTTCGAG 77917 .......... .......... .......... .......... .......... .......... 478 GTTAAGTGGA GCTGCTATTC TTAGAACAAA ATCACTTCCT TGGTGTTAAC CAAATAGGTA 77857 .......... .......... .......... .......... .......... .......... 478 GTGCCTGCTC TGATACCACT TGATAGAATT TATGCCTTCA CTTATTAGTA ATGGACCAGG 77797 .......... .......... .......... .......... .......... .......... 478 TCTCTTACTT TACTTCAGAA AATTACCAGA AAGTTAAATG CAGTAAAATT AACACAATGA 77737 .......... .......... .......... .......... .......... .......... 478 TTTTACGTGG AAACCTCCTT GCTTAAGGGA GTAAAACCAC GACCTATCTC ACAGGATTTT 77677 .......... .......... .......... .......... .......... .......... 478 CAATCGTTTT CACTAATCTT CAAAAGCAAA AGCGAAACAC GATTACACCA AACGTAAGAA 77617 .......... .......... .......... .......... .......... .......... 478 AGAGTTATCA ATCTTACCGT TAAGCAATAG ACCTCTATTG CTCAACAAGC CAAAGTAGAA 77557 .......... .......... .......... .......... .......... .......... 478 AAACAATCTA CCCACTAAGC TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC 77497 .......... .......... .......... .......... .......... .......... 478 AATTCCTTTA TAGATTTAGG AGTGGTTTAC AATTTAAGAA CAAGAGAATA AATTCCTAAA 77437 .......... .......... .......... .......... .......... .......... 478 CAACTAGACG AAAAGCTCCA GATGTTGCTG TTGTCCTAGG AATGATTCTG CCTTTGCTTT 77377 .......... .......... .......... .......... .......... .......... 478 GTGTAGCCTT TGCAAGAGTT CTTGAAAAGT TTTTATCAAG TTGCAAAAAC TGAAAGACAA 77317 .......... .......... .......... .......... .......... .......... 478 ATGTTTAGGA AAGTGCCTTT TATATGGGCA AGTCACTTTC CTAAACTTCT TTGCCATTGG 77257 .......... .......... .......... .......... .......... .......... 478 TTGGAAAGGT CACACTTTTC TGACGCCATC GAGAAGTGTG CACCTACTTT CTGTACGTCT 77197 .......... .......... .......... .......... .......... .......... 478 CCAATTGGCA GTTGACTGGC TCATCATCAT GAGGGCCTGG TACCTCTACT AGGTCCCTGA 77137 .......... .......... .......... .......... .......... .......... 478 GTTTGTTTCA TCTGCAATAC TTCAAACAAG ACACCTGCAA TACTCAAGTA GAAAACCCGG 77077 .......... .......... .......... .......... .......... .......... 478 TACCTTTATG AGGTCCCTAA GTTTGTCAAA TTATCAAAAC TACAAATAAC AAATATGTAT 77017 .......... .......... .......... .......... .......... .......... 478 GATGTTTCTA TAATAGCGTG AGAAGGTGAT TAAAAATTTA GATGTTTTAA TTTGTATTAC 76957 .......... .......... .......... .......... .......... .......... 478 TTTGACTTGA CATGGTAATA TTCACAATCT ATTGTAAAAA AATATATATA TTAGAGTGAC 76897 .......... .......... .......... .......... .......... .......... 478 GCTTTCATAA TTGTGTTTTA GTTTTTGAAG AAGAACTCAT TTATTTGTAA AGCCCAAGTT 76837 .......... .......... .......... .......... .......... .......... 478 AATGATTCAG TCCAAATGAA AATGAATTTA ATTCAAATTT TGTATGAATT TGATCTAATT 76777 .......... .......... .......... .......... .......... .......... 478 ACAATGTATG TGTCTACAAT ATTAACGCTA CTCCCCTATC TTTATATATA GATGATCCAT 76717 ||| | | .......... .......... .......... .......... .......... ..TGAATCTT 486 TTGGTTCATA TGTATATGTA TATAGAAATA ACTATGAAGA GAGTATTTTC AATATTGGTG 76657 ||| | |||| | |||| | | ||| || || TTGATGCATA T-AATATCCA TTAGGAAGTA GCTC...... .......... .......... 519 GACTCAAGTA TAGTACACAA CATTTTATGA TGACGGAACT ATTTACTACT ATTAAGAAGG 76597 .......... .......... .......... .......... .......... .......... 519 GAGTGACGAT CCATGGGACT ACGATAAACT ATTGAGAAAG GGTGAATTGA TCATAATATT 76537 .......... .......... .......... .......... .......... .......... 519 ATGGTGGAAT TAGAATGTAA GTTGACAATT TTATATCCGA TTATCAGTTT ATTCATACGT 76477 .......... .......... .......... .......... .......... .......... 519 ATTTTTTGAA TCGGAATCGA AGGACTATGT GAGTTTCGTT TCCAACTCAT TAAACTGTTC 76417 .......... .......... .......... .......... .......... .......... 519 GTTTTTATGA CTTCAAAATA GAGAGATATT CACGTTTGTG CCTCTTCAAG AGCTTTGGAC 76357 .......... .......... .......... .......... .......... .......... 519 CGGCCATAAC ATTCGAAATT GGAGAAAAAA ATTAAGGAAA CTCTTATTTT ATCTGTAGAA 76297 .......... .......... .......... .......... .......... .......... 519 TAATACTTAA TTTTTTAGCC ACATTTTTTT CATCAGTCTT CTGCACTACT AATGAAGAAA 76237 |||| |||||| | | | || | .......... .......... .......... ......TCTT CTGCACAAAT ATATAATATT 543 AGG-GATTAC TTTTTGTGTG AGTTGGAGAA AGTTGAATGA ATTTACTATA A-AAAAAAAC 76179 | | | ||| || | | || || | ||| || | || || ||| | |||||||| GTTCAAATGC TTTATGAAAG TGATGAAG-C ACTTGCATCA TTTAACCATA AGAAAAAAAC 602 AAATATCCAA TTCCCATTAT TTACTTGTTA AATTACGAGT GAACAATGAA CCCAATTGAA 76119 | TCAA...... .......... .......... .......... .......... .......... 606 TAATTTAACA AAATAAATTT GAGAAAAATG TTTGAAAAAC GTTTTAATTT TGGTCGAAAT 76059 .......... .......... .......... .......... .......... .......... 606 TGATGTTACG AAATCAAATT TTATAGATGA TCTTTTACGT ATTTTAAAGG TATATATATG 75999 .......... .......... .......... .......... .......... .......... 606 TGCCCATGTG GACACATTAA TATTTATAAT GATACAATAT TTGTGATGTC CATGTGAATA 75939 .......... .......... .......... .......... .......... .......... 606 TATATATATA TATTTAAAAT ACACTATCAA ATAGAATAGG GATAAAAAAT TATTTTCAAA 75879 .......... .......... .......... .......... .......... .......... 606 ATTCAATATT ATGACAATAA TCTCAATTAA AATTTGAATA TATTTCAAAT TTTTTTTTTC 75819 .......... .......... .......... .......... .......... .......... 606 AATAAATTTT AAAAGTTGGA TCAAACGTGT TACTGTTAAT ATTAACAAAG AAAAGAGTTC 75759 .......... .......... .......... .......... .......... .......... 606 GTCGTAATAC TACTGAATTA TTGTCCTAAA AAAATGGAGA AAAATTATTG TAATGCATTA 75699 .......... .......... .......... .......... .......... .......... 606 ATTACGGACA GATATTAGAT AATGTAGACC CACCATTATA TAAATTGACT ATGTGAATTG 75639 .......... .......... .......... .......... .......... .......... 606 AAACAAAATG TCTAAAAAGG TTGTCAAATT CCAGGTATTT GATCTCATCT TATTATAAAA 75579 ||| | ||| || | | || ||||| .......... .......... .......... ....ATATGT TATCAAAT-T TGTT-TAAAA 630 AAAACTAATA ATTGTTCCAG ATATTCGTGG CATAACAAAA TAATTGATAC ACATGCAATG 75519 || ||| || ||| | AAGACTCATT TATGT-CATT .......... .......... .......... .......... 649 TTTTATCTTC TAGAAAACAC TTGAAATTAT TTAATAAAAT CTTCTTAACT TGTTGAAGTG 75459 .......... .......... .......... .......... .......... .......... 649 TATTGATTAG AAGTGATATG AAAAAGAAAA AAGAACATAT GATAACACCC ATAACTCTTT 75399 .......... .......... .......... .......... .......... .......... 649 TGCACCTCAC CTATATATTT TACTAATTTC ACAATTTTAT TCTTTTAGTG TTTTTTTATT 75339 .......... .......... .......... .......... .......... .......... 649 TTTATTTCTA CTTGAGCAAA AAATGATATA AGTTTCTGAA AGAAAAAAAA ATAAAACTTT 75279 .......... .......... .......... .......... .......... .......... 649 ATTAAAGAGG TATTTTTTAT ACTATTGTTG ATTAAGAAAA ACTAGGCACG AGAATCACCG 75219 .......... .......... .......... .......... .......... .......... 649 CTTAAATATA TAATTTTTAA ATAAAGAGGT ATTATTTGCG TATAAAAATA TTTACTTTGA 75159 .......... .......... .......... .......... .......... .......... 649 TATAATTTTT AAATATTTCT TATATTTAAG TTTGAAACTT AGAATTTTGG ATGGTTCCAT 75099 .......... .......... .......... .......... .......... .......... 649 AAATATTATA GTCCACATGT GTTGGTAATT ATAATAAAAC TCAAATCAAA ATTAAATTAA 75039 .......... .......... .......... .......... .......... .......... 649 TATTGATGCA AAAAGGAAAT CTATTTAGCA TTAAGAATGA CAATAATATT AAATATTTGT 74979 .......... .......... .......... .......... .......... .......... 649 TCTTTGATTT TACGTTGATT TAGACAATTG AAATACATAA TCTAATTTTA ATTTTCTTTA 74919 .......... .......... .......... .......... .......... .......... 649 ATATTTAGTC ATGTAACTAA TGCTTATTTG TTATAAATTC ATTGAATGAG TGGATAGTCC 74859 .......... .......... .......... .......... .......... .......... 649 ATAAGGTTGG TACATGAACA ACCATTCATA TTCACTAGGT TACATGAACC TTTTTGGATA 74799 .......... .......... .......... .......... .......... .......... 649 AGAATGTATC TATTTACTAT GATACTTAAT ATGGTAACCT TTGGAGTGAT TTCTCACTCT 74739 .......... .......... .......... .......... .......... .......... 649 ATAAATAGGG TTGTTCATTC AGTATTGTAA TAGATACATA TGAGACTTGA ATACACTTGA 74679 .......... .......... .......... .......... .......... .......... 649 ATAAGAAGAA AATTCCTCTT CTTCTATATA CTTCTCTTAT CTTCTTCTCT TTATGATTAT 74619 .......... .......... .......... .......... .......... .......... 649 ATTCTTATGA GCTTGATTTT ATAACACGTT ATCAGCACGA GTCTCTATCT AATTGAGAGT 74559 .......... .......... .......... .......... .......... .......... 649 GGGTTCTTGT TTTTCTTTAG CTCATATTTT GGTTGATCTC GTTATGAAGA TCAAAGTATT 74499 .......... .......... .......... .......... .......... .......... 649 ATATGCATAA AATCAGGTAT GTATTTTCTA AAATATTTTA TGATTTAGAA TAAAATAGTA 74439 .......... .......... .......... .......... .......... .......... 649 TTCAATCACT AATAATTATC AGGAACCGAA GACATATACT ACTATTGGTT GAATATGACA 74379 .......... .......... .......... .......... .......... .......... 649 TGCTATACAA AACTTCTTAA ATAGAAGAAG GTATAAAATT TTAATAGCAT GAATTTGAAT 74319 .......... .......... .......... .......... .......... .......... 649 GTTATTTTGA TTGTTTTGAA TGACTCAAAG GGTGAGTCAT GTTGTACTTC GGTTTATTAT 74259 .......... .......... .......... .......... .......... .......... 649 ACCGTTGGTT AAGGGTAAGA CGATGAATTC AAGTTTCATC GCACCAAAAG GGTAAGACAT 74199 .......... .......... .......... .......... .......... .......... 649 CAGGTTAAAG TCCGGATGCA CCATAATGAA AAATATTTGA GGATAAGACG ATAGATTCAA 74139 ||| ||||| |||||||||| || ||||||| ||||||||| .......... .......... .CATTATGAA AAATATTTGA GGGTAAGACG GTAGATTCAA 688 GTTCTATCGC ACCAAAAGGG TAAGACATCA ATTTGAGTTT TGATGCACC 74090 |||||||||| ||||| |||| |||||||||| ||| |||||| ||||||||| GTTCTATCGC ACCAAGAGGG TAAGACATCA ATTCGAGTTT TGATGCACC 737 hqPGS_C09HBa0099P03.1-2-_SGN-E261435- (74177 74090) ******************************************************************************** EST sequence 13 -strand 780 n (File: SGN-E263280-) 1 GGAATTAATA TACTCAATTT TTGAGAGGGT GCTAACGTAA CTCTNCCCTG TTATCTGAAC 61 GCCACAAGAC CATTGGACAT CCCAAGAATT TGTGCCCTGA AATTGAAATA CTTCCAATTG 121 GTTTCTTGAA GGTAATTTTT TTTGCATGTT TGATAAATGG GAGAATTAGC CCACATAATG 181 CTGCATCGCA ATGGATATAA TAATTGTCAT TTGAATAACC ACAATTTTCC AAGTGTTTGT 241 ATGACGAAAT CGAGGTCATC AATAGCTCCT TTGAAGGTTG TTCCAATATT GATATTGATG 301 ATAGCTGGTT TGTTCTTGTT GACAAGTAAC TTTGATTGTA AATCTTCATA ATCAATTTCC 361 CCATTAACTA AAGTGTTGAT AGTTTGTAGC TCCATTCGAT ACATTCTTGC TGCTTTGAAA 421 ATCGAGTAAT GTGAATCTTT TGATGCATAT AATATCCATT AGGAAGTAGC TCTCTTCTGC 481 ACAAATATAT AATATTGTTC AAATGCTTTA TGAAAGTGAT GAAGCACTTG CATCATTTAA 541 CCATAAGAAA AAAACTCAAA TATGTTATCA AATTTGTTTA AAAAAGACTC ATTTATGTCA 601 TTCATTATGA AAAATATTTG AGGGTAAGAC GGTAGATTCA AGTTCTATCG CACCAAGAGG 661 GTAAGACATC AATTCGAGTT TTGATGCACC ATAATGATAA GGTATTGGGT TCAAGTCCCA 721 TAGAATTATG GCCTAATGTG CCTTGTATGG ATAAGACATT GAGTTTGAGT CTCCATGCAC Predicted gene structure (within gDNA segment 80423 to 73239): Exon 1 80136 80114 ( 23 n); cDNA 394 414 ( 21 n); score: 0.652 Intron 1 80113 78532 (1582 n); Pd: 0.465 (s: 0), Pa: 0.470 (s: 0) Exon 2 78531 78519 ( 13 n); cDNA 415 426 ( 12 n); score: 0.615 Intron 2 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 3 78091 78087 ( 5 n); cDNA 427 431 ( 5 n); score: 1.000 Intron 3 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 76724 76683 ( 42 n); cDNA 432 472 ( 41 n); score: 0.643 Intron 4 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 5 76260 76175 ( 86 n); cDNA 473 559 ( 87 n); score: 0.570 Intron 5 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 6 75604 75559 ( 46 n); cDNA 560 602 ( 43 n); score: 0.630 Intron 6 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 7 74177 74090 ( 88 n); cDNA 603 690 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E263280- 0.759 303 0.388 C PGS_C09HBa0099P03.1-2-_SGN-E263280- (80136 80114,78531 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): ATTTGTGACA CACTTAGCAA GCTGTACTTT AACCCATCCA CATGGTAAAC ATTGTCAATT 80077 ||| | ||| ||| || ||| ATTCGATACA TTCTT-GC-T GCT....... .......... .......... .......... 414 GAATCTTCAA GAGATCTTCC TACTTTGCCA ACTCCCAAAA TGTACCCCTT CTTGCCATCA 80017 .......... .......... .......... .......... .......... .......... 414 CCAAATGAGA CACCTCCTCC TTGGAGGGTC TTGAGTGAGA GGAAGTTCTT TACATCACCA 79957 .......... .......... .......... .......... .......... .......... 414 GTCATATGTT TAGAGCAGCC ACTATCCATA TACCAACATT GTCTGCTGCT CCTCTCACTC 79897 .......... .......... .......... .......... .......... .......... 414 ACCTGCATCA AAAATCACTT GTTAAGCTTG GGAACTCATT TCAGCTTGAG TTCCCAGTAG 79837 .......... .......... .......... .......... .......... .......... 414 GCAAACAAAG GAGTGATCAG ATTGTACTTG GTCCAATATG GTAGACTTTG AATCTTTCTA 79777 .......... .......... .......... .......... .......... .......... 414 ACAAAGGACC TAGGAGCAGG AACAGATTTT TTCTTTGAAA ATCTGTGAGT TGAGACAGGA 79717 .......... .......... .......... .......... .......... .......... 414 TCTGTAGGAC CAGGTCTCTC ATTTGGTACA TTTTTTCTTT CAGCATACTT AAGAGTATCT 79657 .......... .......... .......... .......... .......... .......... 414 CTCACATGAG TTTCTCCAGC TAACACACTC ATTCTTCAGA TGTCCATTCT TACCACAATG 79597 .......... .......... .......... .......... .......... .......... 414 CAGACACAAT AGATTGTCAG ACACAAACAC ATACTTACTG TGAGGATTAT AAAGAGGACT 79537 .......... .......... .......... .......... .......... .......... 414 TATGTTCAGA CTTCTTAGTC CTTTCTTATT GAAATTACTC TGATTTGTCA CATTTGACAG 79477 .......... .......... .......... .......... .......... .......... 414 CAACTTTGAG GATTTGATCC ACTTAAGAGA ATTTTCAAGC TCTTTCTTAA ATTTCACAAC 79417 .......... .......... .......... .......... .......... .......... 414 ATCCTGTTCT AATTTGTTAC TCTTTTCAAG TGACAAACTA AGATTTTTCT CAGAGTTTTT 79357 .......... .......... .......... .......... .......... .......... 414 CAATTTTTCT TGAATTTCAG CTTGCAGACT ATTTGGCTTT CCATTCAGAT TTTCAGCTTC 79297 .......... .......... .......... .......... .......... .......... 414 TTCAGTAATC TGACACAACT GGTTCTTAAG TTCGGAGTTT TTTAACTCTA GAGACACCAT 79237 .......... .......... .......... .......... .......... .......... 414 TCTTGACATT GTGTCTTCAA ATTGACCTTT GTTTTCAGTT AAAATTTCAA GTTCAGCAAT 79177 .......... .......... .......... .......... .......... .......... 414 TATGGTATCT TTTTCAGATG TTAACTCTAT CACAGAATCT AACATGACTT TTGACAAGGT 79117 .......... .......... .......... .......... .......... .......... 414 TCTCAATTTT TTAAGAGAAT ACTTATCCAA GTCAATTTTC ATGTCAAGAA GAGTTACCTG 79057 .......... .......... .......... .......... .......... .......... 414 ATTGTCTTCT TCTTCATTTT CTGTGTGTGC CATAAGAGCA AACATTTCAT TGAAGACAGT 78997 .......... .......... .......... .......... .......... .......... 414 TTCCTCCTCA TGCACAGCAA CCATTGACAC ATCTTTTGGC TCATCAGGAT CTTCTGAGTC 78937 .......... .......... .......... .......... .......... .......... 414 ACTAGAAGAA TCCCCTCATG CAGCAAGAGC CCTTTTGACA ACCATATCAG CAGCAACTTT 78877 .......... .......... .......... .......... .......... .......... 414 ACGATCTCTG TTACCAAGTA CCAGGTCCCT TCTGTTTTCT TTGTCACCCC TGTGTTTTTG 78817 .......... .......... .......... .......... .......... .......... 414 ATGTTCCTTG TTTTCATTCT TGAGTAAAGG ACACTCTCTG ATGAAGTGCC CAGACTTTCC 78757 .......... .......... .......... .......... .......... .......... 414 ACACTTGTAG CAAGTATCCC CTTGAGCAGC ATTGCGAGTC CCATTTGTTC CTCTTTTATA 78697 .......... .......... .......... .......... .......... .......... 414 CATTTTGTTT TTTCTCACAA TCTTTTGAAA TCTACTGATG AGATAAGCCA TATCATCATC 78637 .......... .......... .......... .......... .......... .......... 414 ATCACTTGAA TCTTCATCTG ATTTATACTT CAACATCAAT GACTTGTCCT TCTTGGCTTC 78577 .......... .......... .......... .......... .......... .......... 414 CTTTTTTGAC AAATCATAGT TTCGATTCAT CTCATGTGTT TTAAGATTAC CAATCAAGGC 78517 | | |||| || .......... .......... .......... .......... .....TTGAA -AATCGAG.. 426 ATCCATGGTC AGCACCTTCA AGTCCTTGGC TTCTGTAATG GCATCAACTT TGCTCTCCCA 78457 .......... .......... .......... .......... .......... .......... 426 GGACTTTGGA AGAATTCAAA GCACTTTCCT GACTTGTTTG GTCATGCTTA TAGGTTCACC 78397 .......... .......... .......... .......... .......... .......... 426 CAAACTTCGT AGCTCTTTTG TAATGGAAGA CAACTTGGTG AACATGTCAT GTATAGTTTC 78337 .......... .......... .......... .......... .......... .......... 426 TCCTTCCTTC ATTTTGAAGT TCTCATATCG TGAGGTGAGC ATGTCAATCT TGGATTCTTT 78277 .......... .......... .......... .......... .......... .......... 426 GACTTGTTCA GTTCCTTCAT GTGCAGTCAA CAAGCAATCC CAAATTTCTT TAGCAGACTC 78217 .......... .......... .......... .......... .......... .......... 426 ACAGGCTGAC ACTCTGTTGT ACTCATCAGG TCCTATCCCA CAGACCAGAA GAGTTTTAGC 78157 .......... .......... .......... .......... .......... .......... 426 TTTGAAACCC TTTTCAATCT TTTTCCTGTC AGCATCATCA TATTTCTGCC TGGGCTTTGG 78097 .......... .......... .......... .......... .......... .......... 426 AACAGTAATG GTCTTTTCTC CATCCTTTAC TTCCATCATT GGAACAAAGG GTCCATCTAG 78037 ||||| .....TAATG .......... .......... .......... .......... .......... 431 TATAATATCC CATAACTCGC TATCTTCAGC CATGAGATAG TCGTGCATTC TAACTTTCCA 77977 .......... .......... .......... .......... .......... .......... 431 CCAACTGTAG AAATGTCCAT TGAAACGAGG AGGTCTGTGT GATGACTGAC CTTCTTCGAG 77917 .......... .......... .......... .......... .......... .......... 431 GTTAAGTGGA GCTGCTATTC TTAGAACAAA ATCACTTCCT TGGTGTTAAC CAAATAGGTA 77857 .......... .......... .......... .......... .......... .......... 431 GTGCCTGCTC TGATACCACT TGATAGAATT TATGCCTTCA CTTATTAGTA ATGGACCAGG 77797 .......... .......... .......... .......... .......... .......... 431 TCTCTTACTT TACTTCAGAA AATTACCAGA AAGTTAAATG CAGTAAAATT AACACAATGA 77737 .......... .......... .......... .......... .......... .......... 431 TTTTACGTGG AAACCTCCTT GCTTAAGGGA GTAAAACCAC GACCTATCTC ACAGGATTTT 77677 .......... .......... .......... .......... .......... .......... 431 CAATCGTTTT CACTAATCTT CAAAAGCAAA AGCGAAACAC GATTACACCA AACGTAAGAA 77617 .......... .......... .......... .......... .......... .......... 431 AGAGTTATCA ATCTTACCGT TAAGCAATAG ACCTCTATTG CTCAACAAGC CAAAGTAGAA 77557 .......... .......... .......... .......... .......... .......... 431 AAACAATCTA CCCACTAAGC TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC 77497 .......... .......... .......... .......... .......... .......... 431 AATTCCTTTA TAGATTTAGG AGTGGTTTAC AATTTAAGAA CAAGAGAATA AATTCCTAAA 77437 .......... .......... .......... .......... .......... .......... 431 CAACTAGACG AAAAGCTCCA GATGTTGCTG TTGTCCTAGG AATGATTCTG CCTTTGCTTT 77377 .......... .......... .......... .......... .......... .......... 431 GTGTAGCCTT TGCAAGAGTT CTTGAAAAGT TTTTATCAAG TTGCAAAAAC TGAAAGACAA 77317 .......... .......... .......... .......... .......... .......... 431 ATGTTTAGGA AAGTGCCTTT TATATGGGCA AGTCACTTTC CTAAACTTCT TTGCCATTGG 77257 .......... .......... .......... .......... .......... .......... 431 TTGGAAAGGT CACACTTTTC TGACGCCATC GAGAAGTGTG CACCTACTTT CTGTACGTCT 77197 .......... .......... .......... .......... .......... .......... 431 CCAATTGGCA GTTGACTGGC TCATCATCAT GAGGGCCTGG TACCTCTACT AGGTCCCTGA 77137 .......... .......... .......... .......... .......... .......... 431 GTTTGTTTCA TCTGCAATAC TTCAAACAAG ACACCTGCAA TACTCAAGTA GAAAACCCGG 77077 .......... .......... .......... .......... .......... .......... 431 TACCTTTATG AGGTCCCTAA GTTTGTCAAA TTATCAAAAC TACAAATAAC AAATATGTAT 77017 .......... .......... .......... .......... .......... .......... 431 GATGTTTCTA TAATAGCGTG AGAAGGTGAT TAAAAATTTA GATGTTTTAA TTTGTATTAC 76957 .......... .......... .......... .......... .......... .......... 431 TTTGACTTGA CATGGTAATA TTCACAATCT ATTGTAAAAA AATATATATA TTAGAGTGAC 76897 .......... .......... .......... .......... .......... .......... 431 GCTTTCATAA TTGTGTTTTA GTTTTTGAAG AAGAACTCAT TTATTTGTAA AGCCCAAGTT 76837 .......... .......... .......... .......... .......... .......... 431 AATGATTCAG TCCAAATGAA AATGAATTTA ATTCAAATTT TGTATGAATT TGATCTAATT 76777 .......... .......... .......... .......... .......... .......... 431 ACAATGTATG TGTCTACAAT ATTAACGCTA CTCCCCTATC TTTATATATA GATGATCCAT 76717 ||| | | .......... .......... .......... .......... .......... ..TGAATCTT 439 TTGGTTCATA TGTATATGTA TATAGAAATA ACTATGAAGA GAGTATTTTC AATATTGGTG 76657 ||| | |||| | |||| | | ||| || || TTGATGCATA T-AATATCCA TTAGGAAGTA GCTC...... .......... .......... 472 GACTCAAGTA TAGTACACAA CATTTTATGA TGACGGAACT ATTTACTACT ATTAAGAAGG 76597 .......... .......... .......... .......... .......... .......... 472 GAGTGACGAT CCATGGGACT ACGATAAACT ATTGAGAAAG GGTGAATTGA TCATAATATT 76537 .......... .......... .......... .......... .......... .......... 472 ATGGTGGAAT TAGAATGTAA GTTGACAATT TTATATCCGA TTATCAGTTT ATTCATACGT 76477 .......... .......... .......... .......... .......... .......... 472 ATTTTTTGAA TCGGAATCGA AGGACTATGT GAGTTTCGTT TCCAACTCAT TAAACTGTTC 76417 .......... .......... .......... .......... .......... .......... 472 GTTTTTATGA CTTCAAAATA GAGAGATATT CACGTTTGTG CCTCTTCAAG AGCTTTGGAC 76357 .......... .......... .......... .......... .......... .......... 472 CGGCCATAAC ATTCGAAATT GGAGAAAAAA ATTAAGGAAA CTCTTATTTT ATCTGTAGAA 76297 .......... .......... .......... .......... .......... .......... 472 TAATACTTAA TTTTTTAGCC ACATTTTTTT CATCAGTCTT CTGCACTACT AATGAAGAAA 76237 |||| |||||| | | | || | .......... .......... .......... ......TCTT CTGCACAAAT ATATAATATT 496 AGG-GATTAC TTTTTGTGTG AGTTGGAGAA AGTTGAATGA ATTTACTATA A-AAAAAAAC 76179 | | | ||| || | | || || | ||| || | || || ||| | |||||||| GTTCAAATGC TTTATGAAAG TGATGAAG-C ACTTGCATCA TTTAACCATA AGAAAAAAAC 555 AAATATCCAA TTCCCATTAT TTACTTGTTA AATTACGAGT GAACAATGAA CCCAATTGAA 76119 | TCAA...... .......... .......... .......... .......... .......... 559 TAATTTAACA AAATAAATTT GAGAAAAATG TTTGAAAAAC GTTTTAATTT TGGTCGAAAT 76059 .......... .......... .......... .......... .......... .......... 559 TGATGTTACG AAATCAAATT TTATAGATGA TCTTTTACGT ATTTTAAAGG TATATATATG 75999 .......... .......... .......... .......... .......... .......... 559 TGCCCATGTG GACACATTAA TATTTATAAT GATACAATAT TTGTGATGTC CATGTGAATA 75939 .......... .......... .......... .......... .......... .......... 559 TATATATATA TATTTAAAAT ACACTATCAA ATAGAATAGG GATAAAAAAT TATTTTCAAA 75879 .......... .......... .......... .......... .......... .......... 559 ATTCAATATT ATGACAATAA TCTCAATTAA AATTTGAATA TATTTCAAAT TTTTTTTTTC 75819 .......... .......... .......... .......... .......... .......... 559 AATAAATTTT AAAAGTTGGA TCAAACGTGT TACTGTTAAT ATTAACAAAG AAAAGAGTTC 75759 .......... .......... .......... .......... .......... .......... 559 GTCGTAATAC TACTGAATTA TTGTCCTAAA AAAATGGAGA AAAATTATTG TAATGCATTA 75699 .......... .......... .......... .......... .......... .......... 559 ATTACGGACA GATATTAGAT AATGTAGACC CACCATTATA TAAATTGACT ATGTGAATTG 75639 .......... .......... .......... .......... .......... .......... 559 AAACAAAATG TCTAAAAAGG TTGTCAAATT CCAGGTATTT GATCTCATCT TATTATAAAA 75579 ||| | ||| || | | || ||||| .......... .......... .......... ....ATATGT TATCAAAT-T TGTT-TAAAA 583 AAAACTAATA ATTGTTCCAG ATATTCGTGG CATAACAAAA TAATTGATAC ACATGCAATG 75519 || ||| || ||| | AAGACTCATT TATGT-CATT .......... .......... .......... .......... 602 TTTTATCTTC TAGAAAACAC TTGAAATTAT TTAATAAAAT CTTCTTAACT TGTTGAAGTG 75459 .......... .......... .......... .......... .......... .......... 602 TATTGATTAG AAGTGATATG AAAAAGAAAA AAGAACATAT GATAACACCC ATAACTCTTT 75399 .......... .......... .......... .......... .......... .......... 602 TGCACCTCAC CTATATATTT TACTAATTTC ACAATTTTAT TCTTTTAGTG TTTTTTTATT 75339 .......... .......... .......... .......... .......... .......... 602 TTTATTTCTA CTTGAGCAAA AAATGATATA AGTTTCTGAA AGAAAAAAAA ATAAAACTTT 75279 .......... .......... .......... .......... .......... .......... 602 ATTAAAGAGG TATTTTTTAT ACTATTGTTG ATTAAGAAAA ACTAGGCACG AGAATCACCG 75219 .......... .......... .......... .......... .......... .......... 602 CTTAAATATA TAATTTTTAA ATAAAGAGGT ATTATTTGCG TATAAAAATA TTTACTTTGA 75159 .......... .......... .......... .......... .......... .......... 602 TATAATTTTT AAATATTTCT TATATTTAAG TTTGAAACTT AGAATTTTGG ATGGTTCCAT 75099 .......... .......... .......... .......... .......... .......... 602 AAATATTATA GTCCACATGT GTTGGTAATT ATAATAAAAC TCAAATCAAA ATTAAATTAA 75039 .......... .......... .......... .......... .......... .......... 602 TATTGATGCA AAAAGGAAAT CTATTTAGCA TTAAGAATGA CAATAATATT AAATATTTGT 74979 .......... .......... .......... .......... .......... .......... 602 TCTTTGATTT TACGTTGATT TAGACAATTG AAATACATAA TCTAATTTTA ATTTTCTTTA 74919 .......... .......... .......... .......... .......... .......... 602 ATATTTAGTC ATGTAACTAA TGCTTATTTG TTATAAATTC ATTGAATGAG TGGATAGTCC 74859 .......... .......... .......... .......... .......... .......... 602 ATAAGGTTGG TACATGAACA ACCATTCATA TTCACTAGGT TACATGAACC TTTTTGGATA 74799 .......... .......... .......... .......... .......... .......... 602 AGAATGTATC TATTTACTAT GATACTTAAT ATGGTAACCT TTGGAGTGAT TTCTCACTCT 74739 .......... .......... .......... .......... .......... .......... 602 ATAAATAGGG TTGTTCATTC AGTATTGTAA TAGATACATA TGAGACTTGA ATACACTTGA 74679 .......... .......... .......... .......... .......... .......... 602 ATAAGAAGAA AATTCCTCTT CTTCTATATA CTTCTCTTAT CTTCTTCTCT TTATGATTAT 74619 .......... .......... .......... .......... .......... .......... 602 ATTCTTATGA GCTTGATTTT ATAACACGTT ATCAGCACGA GTCTCTATCT AATTGAGAGT 74559 .......... .......... .......... .......... .......... .......... 602 GGGTTCTTGT TTTTCTTTAG CTCATATTTT GGTTGATCTC GTTATGAAGA TCAAAGTATT 74499 .......... .......... .......... .......... .......... .......... 602 ATATGCATAA AATCAGGTAT GTATTTTCTA AAATATTTTA TGATTTAGAA TAAAATAGTA 74439 .......... .......... .......... .......... .......... .......... 602 TTCAATCACT AATAATTATC AGGAACCGAA GACATATACT ACTATTGGTT GAATATGACA 74379 .......... .......... .......... .......... .......... .......... 602 TGCTATACAA AACTTCTTAA ATAGAAGAAG GTATAAAATT TTAATAGCAT GAATTTGAAT 74319 .......... .......... .......... .......... .......... .......... 602 GTTATTTTGA TTGTTTTGAA TGACTCAAAG GGTGAGTCAT GTTGTACTTC GGTTTATTAT 74259 .......... .......... .......... .......... .......... .......... 602 ACCGTTGGTT AAGGGTAAGA CGATGAATTC AAGTTTCATC GCACCAAAAG GGTAAGACAT 74199 .......... .......... .......... .......... .......... .......... 602 CAGGTTAAAG TCCGGATGCA CCATAATGAA AAATATTTGA GGATAAGACG ATAGATTCAA 74139 ||| ||||| |||||||||| || ||||||| ||||||||| .......... .......... .CATTATGAA AAATATTTGA GGGTAAGACG GTAGATTCAA 641 GTTCTATCGC ACCAAAAGGG TAAGACATCA ATTTGAGTTT TGATGCACC 74090 |||||||||| ||||| |||| |||||||||| ||| |||||| ||||||||| GTTCTATCGC ACCAAGAGGG TAAGACATCA ATTCGAGTTT TGATGCACC 690 hqPGS_C09HBa0099P03.1-2-_SGN-E263280- (74177 74090) ******************************************************************************** EST sequence 25 -strand 716 n (File: SGN-E375221-) 1 TAAAAATAAG CTTACATGTT TGATAAATGG GAGAATTAGC CCACATAATG CTGCATCGCA 61 ATGGATATAA TAATTGTCAT TTGAATAACC ACAATTTTCA AGTGTTTGTA TGACGAAATC 121 GAGGTCATCA ATAGCTCCTC TGAAGGTTGT TCCTATAAAC ACATATATAC TAATTTACCA 181 AAAGTGATGT TATAAGATGT AAGAATATAT ATGTATGTAT TTTTACCAAT ATTGATATTG 241 ATGATAGCTG GTTTGTTCTT GTTGACAAGT AACTTTGATT GTAAATCTTC ATAATCAATT 301 TCCCCATTAA CTAAAGTGTT GATAGTTTGT AGCTCCATTC GATACATTCT TGCTGCTTTG 361 AAAATCGAGT AATGTGAATC TTTTGATGCA TATAATATCC ATTAGGAAGT AGCTCTCTTC 421 TGCACAAATA TATAATATTG TTCAAATGCT TTATGAAAGT GATGAAGCAC TTGCATCATT 481 TAACCATAAG AAAAAAACTC AAATATGTTA TCAAATTTGT TTAAAAAAGA CTCATTTATG 541 TCATTCATTA TGAAAAATAT TTGAGGGTAA GACGGTAGAT TCAAGTTCTA TCGCACCAAG 601 AGGGTAAGAC ATCAATTCGA GTTTTGATGC ACCATAATGA TAAGGTATTG GGTTCAAGTC 661 CCATAGAATT ATGGCCTAAT GTGCCTTGTA TGGATAAGAC ATTGAGTTTG AGTCTC Predicted gene structure (within gDNA segment 80423 to 73309): Exon 1 80136 80114 ( 23 n); cDNA 337 357 ( 21 n); score: 0.652 Intron 1 80113 78532 (1582 n); Pd: 0.465 (s: 0), Pa: 0.470 (s: 0) Exon 2 78531 78519 ( 13 n); cDNA 358 369 ( 12 n); score: 0.615 Intron 2 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 3 78091 78087 ( 5 n); cDNA 370 374 ( 5 n); score: 1.000 Intron 3 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 76724 76683 ( 42 n); cDNA 375 415 ( 41 n); score: 0.643 Intron 4 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 5 76260 76175 ( 86 n); cDNA 416 502 ( 87 n); score: 0.570 Intron 5 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 6 75604 75559 ( 46 n); cDNA 503 545 ( 43 n); score: 0.630 Intron 6 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 7 74177 74090 ( 88 n); cDNA 546 633 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E375221- 0.759 303 0.423 C PGS_C09HBa0099P03.1-2-_SGN-E375221- (80136 80114,78531 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): ATTTGTGACA CACTTAGCAA GCTGTACTTT AACCCATCCA CATGGTAAAC ATTGTCAATT 80077 ||| | ||| ||| || ||| ATTCGATACA TTCTT-GC-T GCT....... .......... .......... .......... 357 GAATCTTCAA GAGATCTTCC TACTTTGCCA ACTCCCAAAA TGTACCCCTT CTTGCCATCA 80017 .......... .......... .......... .......... .......... .......... 357 CCAAATGAGA CACCTCCTCC TTGGAGGGTC TTGAGTGAGA GGAAGTTCTT TACATCACCA 79957 .......... .......... .......... .......... .......... .......... 357 GTCATATGTT TAGAGCAGCC ACTATCCATA TACCAACATT GTCTGCTGCT CCTCTCACTC 79897 .......... .......... .......... .......... .......... .......... 357 ACCTGCATCA AAAATCACTT GTTAAGCTTG GGAACTCATT TCAGCTTGAG TTCCCAGTAG 79837 .......... .......... .......... .......... .......... .......... 357 GCAAACAAAG GAGTGATCAG ATTGTACTTG GTCCAATATG GTAGACTTTG AATCTTTCTA 79777 .......... .......... .......... .......... .......... .......... 357 ACAAAGGACC TAGGAGCAGG AACAGATTTT TTCTTTGAAA ATCTGTGAGT TGAGACAGGA 79717 .......... .......... .......... .......... .......... .......... 357 TCTGTAGGAC CAGGTCTCTC ATTTGGTACA TTTTTTCTTT CAGCATACTT AAGAGTATCT 79657 .......... .......... .......... .......... .......... .......... 357 CTCACATGAG TTTCTCCAGC TAACACACTC ATTCTTCAGA TGTCCATTCT TACCACAATG 79597 .......... .......... .......... .......... .......... .......... 357 CAGACACAAT AGATTGTCAG ACACAAACAC ATACTTACTG TGAGGATTAT AAAGAGGACT 79537 .......... .......... .......... .......... .......... .......... 357 TATGTTCAGA CTTCTTAGTC CTTTCTTATT GAAATTACTC TGATTTGTCA CATTTGACAG 79477 .......... .......... .......... .......... .......... .......... 357 CAACTTTGAG GATTTGATCC ACTTAAGAGA ATTTTCAAGC TCTTTCTTAA ATTTCACAAC 79417 .......... .......... .......... .......... .......... .......... 357 ATCCTGTTCT AATTTGTTAC TCTTTTCAAG TGACAAACTA AGATTTTTCT CAGAGTTTTT 79357 .......... .......... .......... .......... .......... .......... 357 CAATTTTTCT TGAATTTCAG CTTGCAGACT ATTTGGCTTT CCATTCAGAT TTTCAGCTTC 79297 .......... .......... .......... .......... .......... .......... 357 TTCAGTAATC TGACACAACT GGTTCTTAAG TTCGGAGTTT TTTAACTCTA GAGACACCAT 79237 .......... .......... .......... .......... .......... .......... 357 TCTTGACATT GTGTCTTCAA ATTGACCTTT GTTTTCAGTT AAAATTTCAA GTTCAGCAAT 79177 .......... .......... .......... .......... .......... .......... 357 TATGGTATCT TTTTCAGATG TTAACTCTAT CACAGAATCT AACATGACTT TTGACAAGGT 79117 .......... .......... .......... .......... .......... .......... 357 TCTCAATTTT TTAAGAGAAT ACTTATCCAA GTCAATTTTC ATGTCAAGAA GAGTTACCTG 79057 .......... .......... .......... .......... .......... .......... 357 ATTGTCTTCT TCTTCATTTT CTGTGTGTGC CATAAGAGCA AACATTTCAT TGAAGACAGT 78997 .......... .......... .......... .......... .......... .......... 357 TTCCTCCTCA TGCACAGCAA CCATTGACAC ATCTTTTGGC TCATCAGGAT CTTCTGAGTC 78937 .......... .......... .......... .......... .......... .......... 357 ACTAGAAGAA TCCCCTCATG CAGCAAGAGC CCTTTTGACA ACCATATCAG CAGCAACTTT 78877 .......... .......... .......... .......... .......... .......... 357 ACGATCTCTG TTACCAAGTA CCAGGTCCCT TCTGTTTTCT TTGTCACCCC TGTGTTTTTG 78817 .......... .......... .......... .......... .......... .......... 357 ATGTTCCTTG TTTTCATTCT TGAGTAAAGG ACACTCTCTG ATGAAGTGCC CAGACTTTCC 78757 .......... .......... .......... .......... .......... .......... 357 ACACTTGTAG CAAGTATCCC CTTGAGCAGC ATTGCGAGTC CCATTTGTTC CTCTTTTATA 78697 .......... .......... .......... .......... .......... .......... 357 CATTTTGTTT TTTCTCACAA TCTTTTGAAA TCTACTGATG AGATAAGCCA TATCATCATC 78637 .......... .......... .......... .......... .......... .......... 357 ATCACTTGAA TCTTCATCTG ATTTATACTT CAACATCAAT GACTTGTCCT TCTTGGCTTC 78577 .......... .......... .......... .......... .......... .......... 357 CTTTTTTGAC AAATCATAGT TTCGATTCAT CTCATGTGTT TTAAGATTAC CAATCAAGGC 78517 | | |||| || .......... .......... .......... .......... .....TTGAA -AATCGAG.. 369 ATCCATGGTC AGCACCTTCA AGTCCTTGGC TTCTGTAATG GCATCAACTT TGCTCTCCCA 78457 .......... .......... .......... .......... .......... .......... 369 GGACTTTGGA AGAATTCAAA GCACTTTCCT GACTTGTTTG GTCATGCTTA TAGGTTCACC 78397 .......... .......... .......... .......... .......... .......... 369 CAAACTTCGT AGCTCTTTTG TAATGGAAGA CAACTTGGTG AACATGTCAT GTATAGTTTC 78337 .......... .......... .......... .......... .......... .......... 369 TCCTTCCTTC ATTTTGAAGT TCTCATATCG TGAGGTGAGC ATGTCAATCT TGGATTCTTT 78277 .......... .......... .......... .......... .......... .......... 369 GACTTGTTCA GTTCCTTCAT GTGCAGTCAA CAAGCAATCC CAAATTTCTT TAGCAGACTC 78217 .......... .......... .......... .......... .......... .......... 369 ACAGGCTGAC ACTCTGTTGT ACTCATCAGG TCCTATCCCA CAGACCAGAA GAGTTTTAGC 78157 .......... .......... .......... .......... .......... .......... 369 TTTGAAACCC TTTTCAATCT TTTTCCTGTC AGCATCATCA TATTTCTGCC TGGGCTTTGG 78097 .......... .......... .......... .......... .......... .......... 369 AACAGTAATG GTCTTTTCTC CATCCTTTAC TTCCATCATT GGAACAAAGG GTCCATCTAG 78037 ||||| .....TAATG .......... .......... .......... .......... .......... 374 TATAATATCC CATAACTCGC TATCTTCAGC CATGAGATAG TCGTGCATTC TAACTTTCCA 77977 .......... .......... .......... .......... .......... .......... 374 CCAACTGTAG AAATGTCCAT TGAAACGAGG AGGTCTGTGT GATGACTGAC CTTCTTCGAG 77917 .......... .......... .......... .......... .......... .......... 374 GTTAAGTGGA GCTGCTATTC TTAGAACAAA ATCACTTCCT TGGTGTTAAC CAAATAGGTA 77857 .......... .......... .......... .......... .......... .......... 374 GTGCCTGCTC TGATACCACT TGATAGAATT TATGCCTTCA CTTATTAGTA ATGGACCAGG 77797 .......... .......... .......... .......... .......... .......... 374 TCTCTTACTT TACTTCAGAA AATTACCAGA AAGTTAAATG CAGTAAAATT AACACAATGA 77737 .......... .......... .......... .......... .......... .......... 374 TTTTACGTGG AAACCTCCTT GCTTAAGGGA GTAAAACCAC GACCTATCTC ACAGGATTTT 77677 .......... .......... .......... .......... .......... .......... 374 CAATCGTTTT CACTAATCTT CAAAAGCAAA AGCGAAACAC GATTACACCA AACGTAAGAA 77617 .......... .......... .......... .......... .......... .......... 374 AGAGTTATCA ATCTTACCGT TAAGCAATAG ACCTCTATTG CTCAACAAGC CAAAGTAGAA 77557 .......... .......... .......... .......... .......... .......... 374 AAACAATCTA CCCACTAAGC TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC 77497 .......... .......... .......... .......... .......... .......... 374 AATTCCTTTA TAGATTTAGG AGTGGTTTAC AATTTAAGAA CAAGAGAATA AATTCCTAAA 77437 .......... .......... .......... .......... .......... .......... 374 CAACTAGACG AAAAGCTCCA GATGTTGCTG TTGTCCTAGG AATGATTCTG CCTTTGCTTT 77377 .......... .......... .......... .......... .......... .......... 374 GTGTAGCCTT TGCAAGAGTT CTTGAAAAGT TTTTATCAAG TTGCAAAAAC TGAAAGACAA 77317 .......... .......... .......... .......... .......... .......... 374 ATGTTTAGGA AAGTGCCTTT TATATGGGCA AGTCACTTTC CTAAACTTCT TTGCCATTGG 77257 .......... .......... .......... .......... .......... .......... 374 TTGGAAAGGT CACACTTTTC TGACGCCATC GAGAAGTGTG CACCTACTTT CTGTACGTCT 77197 .......... .......... .......... .......... .......... .......... 374 CCAATTGGCA GTTGACTGGC TCATCATCAT GAGGGCCTGG TACCTCTACT AGGTCCCTGA 77137 .......... .......... .......... .......... .......... .......... 374 GTTTGTTTCA TCTGCAATAC TTCAAACAAG ACACCTGCAA TACTCAAGTA GAAAACCCGG 77077 .......... .......... .......... .......... .......... .......... 374 TACCTTTATG AGGTCCCTAA GTTTGTCAAA TTATCAAAAC TACAAATAAC AAATATGTAT 77017 .......... .......... .......... .......... .......... .......... 374 GATGTTTCTA TAATAGCGTG AGAAGGTGAT TAAAAATTTA GATGTTTTAA TTTGTATTAC 76957 .......... .......... .......... .......... .......... .......... 374 TTTGACTTGA CATGGTAATA TTCACAATCT ATTGTAAAAA AATATATATA TTAGAGTGAC 76897 .......... .......... .......... .......... .......... .......... 374 GCTTTCATAA TTGTGTTTTA GTTTTTGAAG AAGAACTCAT TTATTTGTAA AGCCCAAGTT 76837 .......... .......... .......... .......... .......... .......... 374 AATGATTCAG TCCAAATGAA AATGAATTTA ATTCAAATTT TGTATGAATT TGATCTAATT 76777 .......... .......... .......... .......... .......... .......... 374 ACAATGTATG TGTCTACAAT ATTAACGCTA CTCCCCTATC TTTATATATA GATGATCCAT 76717 ||| | | .......... .......... .......... .......... .......... ..TGAATCTT 382 TTGGTTCATA TGTATATGTA TATAGAAATA ACTATGAAGA GAGTATTTTC AATATTGGTG 76657 ||| | |||| | |||| | | ||| || || TTGATGCATA T-AATATCCA TTAGGAAGTA GCTC...... .......... .......... 415 GACTCAAGTA TAGTACACAA CATTTTATGA TGACGGAACT ATTTACTACT ATTAAGAAGG 76597 .......... .......... .......... .......... .......... .......... 415 GAGTGACGAT CCATGGGACT ACGATAAACT ATTGAGAAAG GGTGAATTGA TCATAATATT 76537 .......... .......... .......... .......... .......... .......... 415 ATGGTGGAAT TAGAATGTAA GTTGACAATT TTATATCCGA TTATCAGTTT ATTCATACGT 76477 .......... .......... .......... .......... .......... .......... 415 ATTTTTTGAA TCGGAATCGA AGGACTATGT GAGTTTCGTT TCCAACTCAT TAAACTGTTC 76417 .......... .......... .......... .......... .......... .......... 415 GTTTTTATGA CTTCAAAATA GAGAGATATT CACGTTTGTG CCTCTTCAAG AGCTTTGGAC 76357 .......... .......... .......... .......... .......... .......... 415 CGGCCATAAC ATTCGAAATT GGAGAAAAAA ATTAAGGAAA CTCTTATTTT ATCTGTAGAA 76297 .......... .......... .......... .......... .......... .......... 415 TAATACTTAA TTTTTTAGCC ACATTTTTTT CATCAGTCTT CTGCACTACT AATGAAGAAA 76237 |||| |||||| | | | || | .......... .......... .......... ......TCTT CTGCACAAAT ATATAATATT 439 AGG-GATTAC TTTTTGTGTG AGTTGGAGAA AGTTGAATGA ATTTACTATA A-AAAAAAAC 76179 | | | ||| || | | || || | ||| || | || || ||| | |||||||| GTTCAAATGC TTTATGAAAG TGATGAAG-C ACTTGCATCA TTTAACCATA AGAAAAAAAC 498 AAATATCCAA TTCCCATTAT TTACTTGTTA AATTACGAGT GAACAATGAA CCCAATTGAA 76119 | TCAA...... .......... .......... .......... .......... .......... 502 TAATTTAACA AAATAAATTT GAGAAAAATG TTTGAAAAAC GTTTTAATTT TGGTCGAAAT 76059 .......... .......... .......... .......... .......... .......... 502 TGATGTTACG AAATCAAATT TTATAGATGA TCTTTTACGT ATTTTAAAGG TATATATATG 75999 .......... .......... .......... .......... .......... .......... 502 TGCCCATGTG GACACATTAA TATTTATAAT GATACAATAT TTGTGATGTC CATGTGAATA 75939 .......... .......... .......... .......... .......... .......... 502 TATATATATA TATTTAAAAT ACACTATCAA ATAGAATAGG GATAAAAAAT TATTTTCAAA 75879 .......... .......... .......... .......... .......... .......... 502 ATTCAATATT ATGACAATAA TCTCAATTAA AATTTGAATA TATTTCAAAT TTTTTTTTTC 75819 .......... .......... .......... .......... .......... .......... 502 AATAAATTTT AAAAGTTGGA TCAAACGTGT TACTGTTAAT ATTAACAAAG AAAAGAGTTC 75759 .......... .......... .......... .......... .......... .......... 502 GTCGTAATAC TACTGAATTA TTGTCCTAAA AAAATGGAGA AAAATTATTG TAATGCATTA 75699 .......... .......... .......... .......... .......... .......... 502 ATTACGGACA GATATTAGAT AATGTAGACC CACCATTATA TAAATTGACT ATGTGAATTG 75639 .......... .......... .......... .......... .......... .......... 502 AAACAAAATG TCTAAAAAGG TTGTCAAATT CCAGGTATTT GATCTCATCT TATTATAAAA 75579 ||| | ||| || | | || ||||| .......... .......... .......... ....ATATGT TATCAAAT-T TGTT-TAAAA 526 AAAACTAATA ATTGTTCCAG ATATTCGTGG CATAACAAAA TAATTGATAC ACATGCAATG 75519 || ||| || ||| | AAGACTCATT TATGT-CATT .......... .......... .......... .......... 545 TTTTATCTTC TAGAAAACAC TTGAAATTAT TTAATAAAAT CTTCTTAACT TGTTGAAGTG 75459 .......... .......... .......... .......... .......... .......... 545 TATTGATTAG AAGTGATATG AAAAAGAAAA AAGAACATAT GATAACACCC ATAACTCTTT 75399 .......... .......... .......... .......... .......... .......... 545 TGCACCTCAC CTATATATTT TACTAATTTC ACAATTTTAT TCTTTTAGTG TTTTTTTATT 75339 .......... .......... .......... .......... .......... .......... 545 TTTATTTCTA CTTGAGCAAA AAATGATATA AGTTTCTGAA AGAAAAAAAA ATAAAACTTT 75279 .......... .......... .......... .......... .......... .......... 545 ATTAAAGAGG TATTTTTTAT ACTATTGTTG ATTAAGAAAA ACTAGGCACG AGAATCACCG 75219 .......... .......... .......... .......... .......... .......... 545 CTTAAATATA TAATTTTTAA ATAAAGAGGT ATTATTTGCG TATAAAAATA TTTACTTTGA 75159 .......... .......... .......... .......... .......... .......... 545 TATAATTTTT AAATATTTCT TATATTTAAG TTTGAAACTT AGAATTTTGG ATGGTTCCAT 75099 .......... .......... .......... .......... .......... .......... 545 AAATATTATA GTCCACATGT GTTGGTAATT ATAATAAAAC TCAAATCAAA ATTAAATTAA 75039 .......... .......... .......... .......... .......... .......... 545 TATTGATGCA AAAAGGAAAT CTATTTAGCA TTAAGAATGA CAATAATATT AAATATTTGT 74979 .......... .......... .......... .......... .......... .......... 545 TCTTTGATTT TACGTTGATT TAGACAATTG AAATACATAA TCTAATTTTA ATTTTCTTTA 74919 .......... .......... .......... .......... .......... .......... 545 ATATTTAGTC ATGTAACTAA TGCTTATTTG TTATAAATTC ATTGAATGAG TGGATAGTCC 74859 .......... .......... .......... .......... .......... .......... 545 ATAAGGTTGG TACATGAACA ACCATTCATA TTCACTAGGT TACATGAACC TTTTTGGATA 74799 .......... .......... .......... .......... .......... .......... 545 AGAATGTATC TATTTACTAT GATACTTAAT ATGGTAACCT TTGGAGTGAT TTCTCACTCT 74739 .......... .......... .......... .......... .......... .......... 545 ATAAATAGGG TTGTTCATTC AGTATTGTAA TAGATACATA TGAGACTTGA ATACACTTGA 74679 .......... .......... .......... .......... .......... .......... 545 ATAAGAAGAA AATTCCTCTT CTTCTATATA CTTCTCTTAT CTTCTTCTCT TTATGATTAT 74619 .......... .......... .......... .......... .......... .......... 545 ATTCTTATGA GCTTGATTTT ATAACACGTT ATCAGCACGA GTCTCTATCT AATTGAGAGT 74559 .......... .......... .......... .......... .......... .......... 545 GGGTTCTTGT TTTTCTTTAG CTCATATTTT GGTTGATCTC GTTATGAAGA TCAAAGTATT 74499 .......... .......... .......... .......... .......... .......... 545 ATATGCATAA AATCAGGTAT GTATTTTCTA AAATATTTTA TGATTTAGAA TAAAATAGTA 74439 .......... .......... .......... .......... .......... .......... 545 TTCAATCACT AATAATTATC AGGAACCGAA GACATATACT ACTATTGGTT GAATATGACA 74379 .......... .......... .......... .......... .......... .......... 545 TGCTATACAA AACTTCTTAA ATAGAAGAAG GTATAAAATT TTAATAGCAT GAATTTGAAT 74319 .......... .......... .......... .......... .......... .......... 545 GTTATTTTGA TTGTTTTGAA TGACTCAAAG GGTGAGTCAT GTTGTACTTC GGTTTATTAT 74259 .......... .......... .......... .......... .......... .......... 545 ACCGTTGGTT AAGGGTAAGA CGATGAATTC AAGTTTCATC GCACCAAAAG GGTAAGACAT 74199 .......... .......... .......... .......... .......... .......... 545 CAGGTTAAAG TCCGGATGCA CCATAATGAA AAATATTTGA GGATAAGACG ATAGATTCAA 74139 ||| ||||| |||||||||| || ||||||| ||||||||| .......... .......... .CATTATGAA AAATATTTGA GGGTAAGACG GTAGATTCAA 584 GTTCTATCGC ACCAAAAGGG TAAGACATCA ATTTGAGTTT TGATGCACC 74090 |||||||||| ||||| |||| |||||||||| ||| |||||| ||||||||| GTTCTATCGC ACCAAGAGGG TAAGACATCA ATTCGAGTTT TGATGCACC 633 hqPGS_C09HBa0099P03.1-2-_SGN-E375221- (74177 74090) ******************************************************************************** EST sequence 56 -strand 722 n (File: SGN-E260221-) 1 GAACGCCACA AGACATTGGA CATCCCAAGA ATTTGTGCCC TGAAATTGAA ATACTTCCAA 61 TTGGTTTCTT GAAGGTAATT TTTTTTGCAT GTTTGATAAA TGGGAGAATT AGCCCACATA 121 ATGCTGCATC GCAATGGATA TAATAATTGT CATTTGAATA ACCACAATTT TCAAGTGTTT 181 GTATGACGAA ATCGAGGTCA TCAATAGCTC CTTTGAAGGT TGTTCCAATA TTGATATTGA 241 TGATAGCTGG TTTGTTCTTG TTGACAAGTA ACTTTGATTG TAAATCTTCA TAATCAATTT 301 CCCCATTAAC TAAAGTGTTG ATAGTTTGTA GCTCCATTCG ATACATTCTT GCTGCTTTGA 361 AAATCGAGTA ATGTGAATCT TTTGATGCAT ATAATATCCA TTAGGAAGTA GCTCTCTTCT 421 GCACAAATAT ATAATATTGT TCAAATGCTT TATGAAAGTG ATGAAGCACT TGCATCATTT 481 AACCATAAGA AAAAAACTCA AATATGTTAT CAAATTTGTT TAAAAAAGAC TCATTTATGT 541 CATTCATTAT GAAAAATATT TGAGGGTAAG ACGGTAGATT CAAGTTCTAT CGCACCAAGA 601 GGGTAAGACA TCAATTCGAG TTTTGATGCA CCATAATGAT AAGGTATTGG GTTCAAGTCC 661 CATAGAATTA TGGCCTAATG TGCCTTGTAT GGATAAGACA TTGAGTTTGA GTCTCCATGC 721 AC Predicted gene structure (within gDNA segment 80423 to 73239): Exon 1 80136 80114 ( 23 n); cDNA 336 356 ( 21 n); score: 0.652 Intron 1 80113 78532 (1582 n); Pd: 0.465 (s: 0), Pa: 0.470 (s: 0) Exon 2 78531 78519 ( 13 n); cDNA 357 368 ( 12 n); score: 0.615 Intron 2 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 3 78091 78087 ( 5 n); cDNA 369 373 ( 5 n); score: 1.000 Intron 3 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 76724 76683 ( 42 n); cDNA 374 414 ( 41 n); score: 0.643 Intron 4 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 5 76260 76175 ( 86 n); cDNA 415 501 ( 87 n); score: 0.570 Intron 5 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 6 75604 75559 ( 46 n); cDNA 502 544 ( 43 n); score: 0.630 Intron 6 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 7 74177 74090 ( 88 n); cDNA 545 632 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E260221- 0.759 303 0.420 C PGS_C09HBa0099P03.1-2-_SGN-E260221- (80136 80114,78531 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): ATTTGTGACA CACTTAGCAA GCTGTACTTT AACCCATCCA CATGGTAAAC ATTGTCAATT 80077 ||| | ||| ||| || ||| ATTCGATACA TTCTT-GC-T GCT....... .......... .......... .......... 356 GAATCTTCAA GAGATCTTCC TACTTTGCCA ACTCCCAAAA TGTACCCCTT CTTGCCATCA 80017 .......... .......... .......... .......... .......... .......... 356 CCAAATGAGA CACCTCCTCC TTGGAGGGTC TTGAGTGAGA GGAAGTTCTT TACATCACCA 79957 .......... .......... .......... .......... .......... .......... 356 GTCATATGTT TAGAGCAGCC ACTATCCATA TACCAACATT GTCTGCTGCT CCTCTCACTC 79897 .......... .......... .......... .......... .......... .......... 356 ACCTGCATCA AAAATCACTT GTTAAGCTTG GGAACTCATT TCAGCTTGAG TTCCCAGTAG 79837 .......... .......... .......... .......... .......... .......... 356 GCAAACAAAG GAGTGATCAG ATTGTACTTG GTCCAATATG GTAGACTTTG AATCTTTCTA 79777 .......... .......... .......... .......... .......... .......... 356 ACAAAGGACC TAGGAGCAGG AACAGATTTT TTCTTTGAAA ATCTGTGAGT TGAGACAGGA 79717 .......... .......... .......... .......... .......... .......... 356 TCTGTAGGAC CAGGTCTCTC ATTTGGTACA TTTTTTCTTT CAGCATACTT AAGAGTATCT 79657 .......... .......... .......... .......... .......... .......... 356 CTCACATGAG TTTCTCCAGC TAACACACTC ATTCTTCAGA TGTCCATTCT TACCACAATG 79597 .......... .......... .......... .......... .......... .......... 356 CAGACACAAT AGATTGTCAG ACACAAACAC ATACTTACTG TGAGGATTAT AAAGAGGACT 79537 .......... .......... .......... .......... .......... .......... 356 TATGTTCAGA CTTCTTAGTC CTTTCTTATT GAAATTACTC TGATTTGTCA CATTTGACAG 79477 .......... .......... .......... .......... .......... .......... 356 CAACTTTGAG GATTTGATCC ACTTAAGAGA ATTTTCAAGC TCTTTCTTAA ATTTCACAAC 79417 .......... .......... .......... .......... .......... .......... 356 ATCCTGTTCT AATTTGTTAC TCTTTTCAAG TGACAAACTA AGATTTTTCT CAGAGTTTTT 79357 .......... .......... .......... .......... .......... .......... 356 CAATTTTTCT TGAATTTCAG CTTGCAGACT ATTTGGCTTT CCATTCAGAT TTTCAGCTTC 79297 .......... .......... .......... .......... .......... .......... 356 TTCAGTAATC TGACACAACT GGTTCTTAAG TTCGGAGTTT TTTAACTCTA GAGACACCAT 79237 .......... .......... .......... .......... .......... .......... 356 TCTTGACATT GTGTCTTCAA ATTGACCTTT GTTTTCAGTT AAAATTTCAA GTTCAGCAAT 79177 .......... .......... .......... .......... .......... .......... 356 TATGGTATCT TTTTCAGATG TTAACTCTAT CACAGAATCT AACATGACTT TTGACAAGGT 79117 .......... .......... .......... .......... .......... .......... 356 TCTCAATTTT TTAAGAGAAT ACTTATCCAA GTCAATTTTC ATGTCAAGAA GAGTTACCTG 79057 .......... .......... .......... .......... .......... .......... 356 ATTGTCTTCT TCTTCATTTT CTGTGTGTGC CATAAGAGCA AACATTTCAT TGAAGACAGT 78997 .......... .......... .......... .......... .......... .......... 356 TTCCTCCTCA TGCACAGCAA CCATTGACAC ATCTTTTGGC TCATCAGGAT CTTCTGAGTC 78937 .......... .......... .......... .......... .......... .......... 356 ACTAGAAGAA TCCCCTCATG CAGCAAGAGC CCTTTTGACA ACCATATCAG CAGCAACTTT 78877 .......... .......... .......... .......... .......... .......... 356 ACGATCTCTG TTACCAAGTA CCAGGTCCCT TCTGTTTTCT TTGTCACCCC TGTGTTTTTG 78817 .......... .......... .......... .......... .......... .......... 356 ATGTTCCTTG TTTTCATTCT TGAGTAAAGG ACACTCTCTG ATGAAGTGCC CAGACTTTCC 78757 .......... .......... .......... .......... .......... .......... 356 ACACTTGTAG CAAGTATCCC CTTGAGCAGC ATTGCGAGTC CCATTTGTTC CTCTTTTATA 78697 .......... .......... .......... .......... .......... .......... 356 CATTTTGTTT TTTCTCACAA TCTTTTGAAA TCTACTGATG AGATAAGCCA TATCATCATC 78637 .......... .......... .......... .......... .......... .......... 356 ATCACTTGAA TCTTCATCTG ATTTATACTT CAACATCAAT GACTTGTCCT TCTTGGCTTC 78577 .......... .......... .......... .......... .......... .......... 356 CTTTTTTGAC AAATCATAGT TTCGATTCAT CTCATGTGTT TTAAGATTAC CAATCAAGGC 78517 | | |||| || .......... .......... .......... .......... .....TTGAA -AATCGAG.. 368 ATCCATGGTC AGCACCTTCA AGTCCTTGGC TTCTGTAATG GCATCAACTT TGCTCTCCCA 78457 .......... .......... .......... .......... .......... .......... 368 GGACTTTGGA AGAATTCAAA GCACTTTCCT GACTTGTTTG GTCATGCTTA TAGGTTCACC 78397 .......... .......... .......... .......... .......... .......... 368 CAAACTTCGT AGCTCTTTTG TAATGGAAGA CAACTTGGTG AACATGTCAT GTATAGTTTC 78337 .......... .......... .......... .......... .......... .......... 368 TCCTTCCTTC ATTTTGAAGT TCTCATATCG TGAGGTGAGC ATGTCAATCT TGGATTCTTT 78277 .......... .......... .......... .......... .......... .......... 368 GACTTGTTCA GTTCCTTCAT GTGCAGTCAA CAAGCAATCC CAAATTTCTT TAGCAGACTC 78217 .......... .......... .......... .......... .......... .......... 368 ACAGGCTGAC ACTCTGTTGT ACTCATCAGG TCCTATCCCA CAGACCAGAA GAGTTTTAGC 78157 .......... .......... .......... .......... .......... .......... 368 TTTGAAACCC TTTTCAATCT TTTTCCTGTC AGCATCATCA TATTTCTGCC TGGGCTTTGG 78097 .......... .......... .......... .......... .......... .......... 368 AACAGTAATG GTCTTTTCTC CATCCTTTAC TTCCATCATT GGAACAAAGG GTCCATCTAG 78037 ||||| .....TAATG .......... .......... .......... .......... .......... 373 TATAATATCC CATAACTCGC TATCTTCAGC CATGAGATAG TCGTGCATTC TAACTTTCCA 77977 .......... .......... .......... .......... .......... .......... 373 CCAACTGTAG AAATGTCCAT TGAAACGAGG AGGTCTGTGT GATGACTGAC CTTCTTCGAG 77917 .......... .......... .......... .......... .......... .......... 373 GTTAAGTGGA GCTGCTATTC TTAGAACAAA ATCACTTCCT TGGTGTTAAC CAAATAGGTA 77857 .......... .......... .......... .......... .......... .......... 373 GTGCCTGCTC TGATACCACT TGATAGAATT TATGCCTTCA CTTATTAGTA ATGGACCAGG 77797 .......... .......... .......... .......... .......... .......... 373 TCTCTTACTT TACTTCAGAA AATTACCAGA AAGTTAAATG CAGTAAAATT AACACAATGA 77737 .......... .......... .......... .......... .......... .......... 373 TTTTACGTGG AAACCTCCTT GCTTAAGGGA GTAAAACCAC GACCTATCTC ACAGGATTTT 77677 .......... .......... .......... .......... .......... .......... 373 CAATCGTTTT CACTAATCTT CAAAAGCAAA AGCGAAACAC GATTACACCA AACGTAAGAA 77617 .......... .......... .......... .......... .......... .......... 373 AGAGTTATCA ATCTTACCGT TAAGCAATAG ACCTCTATTG CTCAACAAGC CAAAGTAGAA 77557 .......... .......... .......... .......... .......... .......... 373 AAACAATCTA CCCACTAAGC TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC 77497 .......... .......... .......... .......... .......... .......... 373 AATTCCTTTA TAGATTTAGG AGTGGTTTAC AATTTAAGAA CAAGAGAATA AATTCCTAAA 77437 .......... .......... .......... .......... .......... .......... 373 CAACTAGACG AAAAGCTCCA GATGTTGCTG TTGTCCTAGG AATGATTCTG CCTTTGCTTT 77377 .......... .......... .......... .......... .......... .......... 373 GTGTAGCCTT TGCAAGAGTT CTTGAAAAGT TTTTATCAAG TTGCAAAAAC TGAAAGACAA 77317 .......... .......... .......... .......... .......... .......... 373 ATGTTTAGGA AAGTGCCTTT TATATGGGCA AGTCACTTTC CTAAACTTCT TTGCCATTGG 77257 .......... .......... .......... .......... .......... .......... 373 TTGGAAAGGT CACACTTTTC TGACGCCATC GAGAAGTGTG CACCTACTTT CTGTACGTCT 77197 .......... .......... .......... .......... .......... .......... 373 CCAATTGGCA GTTGACTGGC TCATCATCAT GAGGGCCTGG TACCTCTACT AGGTCCCTGA 77137 .......... .......... .......... .......... .......... .......... 373 GTTTGTTTCA TCTGCAATAC TTCAAACAAG ACACCTGCAA TACTCAAGTA GAAAACCCGG 77077 .......... .......... .......... .......... .......... .......... 373 TACCTTTATG AGGTCCCTAA GTTTGTCAAA TTATCAAAAC TACAAATAAC AAATATGTAT 77017 .......... .......... .......... .......... .......... .......... 373 GATGTTTCTA TAATAGCGTG AGAAGGTGAT TAAAAATTTA GATGTTTTAA TTTGTATTAC 76957 .......... .......... .......... .......... .......... .......... 373 TTTGACTTGA CATGGTAATA TTCACAATCT ATTGTAAAAA AATATATATA TTAGAGTGAC 76897 .......... .......... .......... .......... .......... .......... 373 GCTTTCATAA TTGTGTTTTA GTTTTTGAAG AAGAACTCAT TTATTTGTAA AGCCCAAGTT 76837 .......... .......... .......... .......... .......... .......... 373 AATGATTCAG TCCAAATGAA AATGAATTTA ATTCAAATTT TGTATGAATT TGATCTAATT 76777 .......... .......... .......... .......... .......... .......... 373 ACAATGTATG TGTCTACAAT ATTAACGCTA CTCCCCTATC TTTATATATA GATGATCCAT 76717 ||| | | .......... .......... .......... .......... .......... ..TGAATCTT 381 TTGGTTCATA TGTATATGTA TATAGAAATA ACTATGAAGA GAGTATTTTC AATATTGGTG 76657 ||| | |||| | |||| | | ||| || || TTGATGCATA T-AATATCCA TTAGGAAGTA GCTC...... .......... .......... 414 GACTCAAGTA TAGTACACAA CATTTTATGA TGACGGAACT ATTTACTACT ATTAAGAAGG 76597 .......... .......... .......... .......... .......... .......... 414 GAGTGACGAT CCATGGGACT ACGATAAACT ATTGAGAAAG GGTGAATTGA TCATAATATT 76537 .......... .......... .......... .......... .......... .......... 414 ATGGTGGAAT TAGAATGTAA GTTGACAATT TTATATCCGA TTATCAGTTT ATTCATACGT 76477 .......... .......... .......... .......... .......... .......... 414 ATTTTTTGAA TCGGAATCGA AGGACTATGT GAGTTTCGTT TCCAACTCAT TAAACTGTTC 76417 .......... .......... .......... .......... .......... .......... 414 GTTTTTATGA CTTCAAAATA GAGAGATATT CACGTTTGTG CCTCTTCAAG AGCTTTGGAC 76357 .......... .......... .......... .......... .......... .......... 414 CGGCCATAAC ATTCGAAATT GGAGAAAAAA ATTAAGGAAA CTCTTATTTT ATCTGTAGAA 76297 .......... .......... .......... .......... .......... .......... 414 TAATACTTAA TTTTTTAGCC ACATTTTTTT CATCAGTCTT CTGCACTACT AATGAAGAAA 76237 |||| |||||| | | | || | .......... .......... .......... ......TCTT CTGCACAAAT ATATAATATT 438 AGG-GATTAC TTTTTGTGTG AGTTGGAGAA AGTTGAATGA ATTTACTATA A-AAAAAAAC 76179 | | | ||| || | | || || | ||| || | || || ||| | |||||||| GTTCAAATGC TTTATGAAAG TGATGAAG-C ACTTGCATCA TTTAACCATA AGAAAAAAAC 497 AAATATCCAA TTCCCATTAT TTACTTGTTA AATTACGAGT GAACAATGAA CCCAATTGAA 76119 | TCAA...... .......... .......... .......... .......... .......... 501 TAATTTAACA AAATAAATTT GAGAAAAATG TTTGAAAAAC GTTTTAATTT TGGTCGAAAT 76059 .......... .......... .......... .......... .......... .......... 501 TGATGTTACG AAATCAAATT TTATAGATGA TCTTTTACGT ATTTTAAAGG TATATATATG 75999 .......... .......... .......... .......... .......... .......... 501 TGCCCATGTG GACACATTAA TATTTATAAT GATACAATAT TTGTGATGTC CATGTGAATA 75939 .......... .......... .......... .......... .......... .......... 501 TATATATATA TATTTAAAAT ACACTATCAA ATAGAATAGG GATAAAAAAT TATTTTCAAA 75879 .......... .......... .......... .......... .......... .......... 501 ATTCAATATT ATGACAATAA TCTCAATTAA AATTTGAATA TATTTCAAAT TTTTTTTTTC 75819 .......... .......... .......... .......... .......... .......... 501 AATAAATTTT AAAAGTTGGA TCAAACGTGT TACTGTTAAT ATTAACAAAG AAAAGAGTTC 75759 .......... .......... .......... .......... .......... .......... 501 GTCGTAATAC TACTGAATTA TTGTCCTAAA AAAATGGAGA AAAATTATTG TAATGCATTA 75699 .......... .......... .......... .......... .......... .......... 501 ATTACGGACA GATATTAGAT AATGTAGACC CACCATTATA TAAATTGACT ATGTGAATTG 75639 .......... .......... .......... .......... .......... .......... 501 AAACAAAATG TCTAAAAAGG TTGTCAAATT CCAGGTATTT GATCTCATCT TATTATAAAA 75579 ||| | ||| || | | || ||||| .......... .......... .......... ....ATATGT TATCAAAT-T TGTT-TAAAA 525 AAAACTAATA ATTGTTCCAG ATATTCGTGG CATAACAAAA TAATTGATAC ACATGCAATG 75519 || ||| || ||| | AAGACTCATT TATGT-CATT .......... .......... .......... .......... 544 TTTTATCTTC TAGAAAACAC TTGAAATTAT TTAATAAAAT CTTCTTAACT TGTTGAAGTG 75459 .......... .......... .......... .......... .......... .......... 544 TATTGATTAG AAGTGATATG AAAAAGAAAA AAGAACATAT GATAACACCC ATAACTCTTT 75399 .......... .......... .......... .......... .......... .......... 544 TGCACCTCAC CTATATATTT TACTAATTTC ACAATTTTAT TCTTTTAGTG TTTTTTTATT 75339 .......... .......... .......... .......... .......... .......... 544 TTTATTTCTA CTTGAGCAAA AAATGATATA AGTTTCTGAA AGAAAAAAAA ATAAAACTTT 75279 .......... .......... .......... .......... .......... .......... 544 ATTAAAGAGG TATTTTTTAT ACTATTGTTG ATTAAGAAAA ACTAGGCACG AGAATCACCG 75219 .......... .......... .......... .......... .......... .......... 544 CTTAAATATA TAATTTTTAA ATAAAGAGGT ATTATTTGCG TATAAAAATA TTTACTTTGA 75159 .......... .......... .......... .......... .......... .......... 544 TATAATTTTT AAATATTTCT TATATTTAAG TTTGAAACTT AGAATTTTGG ATGGTTCCAT 75099 .......... .......... .......... .......... .......... .......... 544 AAATATTATA GTCCACATGT GTTGGTAATT ATAATAAAAC TCAAATCAAA ATTAAATTAA 75039 .......... .......... .......... .......... .......... .......... 544 TATTGATGCA AAAAGGAAAT CTATTTAGCA TTAAGAATGA CAATAATATT AAATATTTGT 74979 .......... .......... .......... .......... .......... .......... 544 TCTTTGATTT TACGTTGATT TAGACAATTG AAATACATAA TCTAATTTTA ATTTTCTTTA 74919 .......... .......... .......... .......... .......... .......... 544 ATATTTAGTC ATGTAACTAA TGCTTATTTG TTATAAATTC ATTGAATGAG TGGATAGTCC 74859 .......... .......... .......... .......... .......... .......... 544 ATAAGGTTGG TACATGAACA ACCATTCATA TTCACTAGGT TACATGAACC TTTTTGGATA 74799 .......... .......... .......... .......... .......... .......... 544 AGAATGTATC TATTTACTAT GATACTTAAT ATGGTAACCT TTGGAGTGAT TTCTCACTCT 74739 .......... .......... .......... .......... .......... .......... 544 ATAAATAGGG TTGTTCATTC AGTATTGTAA TAGATACATA TGAGACTTGA ATACACTTGA 74679 .......... .......... .......... .......... .......... .......... 544 ATAAGAAGAA AATTCCTCTT CTTCTATATA CTTCTCTTAT CTTCTTCTCT TTATGATTAT 74619 .......... .......... .......... .......... .......... .......... 544 ATTCTTATGA GCTTGATTTT ATAACACGTT ATCAGCACGA GTCTCTATCT AATTGAGAGT 74559 .......... .......... .......... .......... .......... .......... 544 GGGTTCTTGT TTTTCTTTAG CTCATATTTT GGTTGATCTC GTTATGAAGA TCAAAGTATT 74499 .......... .......... .......... .......... .......... .......... 544 ATATGCATAA AATCAGGTAT GTATTTTCTA AAATATTTTA TGATTTAGAA TAAAATAGTA 74439 .......... .......... .......... .......... .......... .......... 544 TTCAATCACT AATAATTATC AGGAACCGAA GACATATACT ACTATTGGTT GAATATGACA 74379 .......... .......... .......... .......... .......... .......... 544 TGCTATACAA AACTTCTTAA ATAGAAGAAG GTATAAAATT TTAATAGCAT GAATTTGAAT 74319 .......... .......... .......... .......... .......... .......... 544 GTTATTTTGA TTGTTTTGAA TGACTCAAAG GGTGAGTCAT GTTGTACTTC GGTTTATTAT 74259 .......... .......... .......... .......... .......... .......... 544 ACCGTTGGTT AAGGGTAAGA CGATGAATTC AAGTTTCATC GCACCAAAAG GGTAAGACAT 74199 .......... .......... .......... .......... .......... .......... 544 CAGGTTAAAG TCCGGATGCA CCATAATGAA AAATATTTGA GGATAAGACG ATAGATTCAA 74139 ||| ||||| |||||||||| || ||||||| ||||||||| .......... .......... .CATTATGAA AAATATTTGA GGGTAAGACG GTAGATTCAA 583 GTTCTATCGC ACCAAAAGGG TAAGACATCA ATTTGAGTTT TGATGCACC 74090 |||||||||| ||||| |||| |||||||||| ||| |||||| ||||||||| GTTCTATCGC ACCAAGAGGG TAAGACATCA ATTCGAGTTT TGATGCACC 632 hqPGS_C09HBa0099P03.1-2-_SGN-E260221- (74177 74090) ******************************************************************************** EST sequence 59 -strand 778 n (File: SGN-E260587-) 1 CAAATACCAT AGAAAGAACT ATGTCATNNG TAACTTCGAT CGAGCGTTGA AGGAAAATTG 61 AATAAAAATA AGCTTACATG TTTGATAAAT GGGAGAATTA GCCCACATAA TGCTGCATCG 121 CAATGGATAT AATAATTGTC ATTTGAATAA CCACAATTTT CAAGTGTTTG TATGACGAAA 181 TCGAGGTCAT CAATAGCTCC TTTGAAGGTT GTTCCTATAA ACACATATAT ACTAATTTAC 241 CAAAAGTGAT GTTATAAGAT GTAAGAATAT ATATGTATGT ATTTTTACCA ATATTGATAT 301 TGATGATAGC TGGTTTGTTC TTGTTGACAA GTAACTTTGA TTGTAAATCT TCATAATCAA 361 TTTCCCCATT AACTAAAGTG TTGATAGTTT GTAGCTCCAT TCGATACATT CTTGCTGCTT 421 TGAAAATCGA GTAATGTGAA TCTTTTGATG CATATAATAT CCATTAGGAA GTAGCTCTCT 481 TCTGCACAAA TATATAATAT TGTTCAAATG CTTTATGAAA GTGATGAAGC ACTTGCATCA 541 TTTAACCATA AGAAAAAAAC TCAAATATGT TATCAAATTT GTTTAAAAAA GACTCATTTA 601 TGTCATTCAT TATGAAAAAT ATTTGAGGGT AAGACGGTAG ATTCAAGTTC TATCGCACCA 661 AGAGGGTAAG ACATCAATTC GAGTTTTGAT GCACCATAAT GATAAGGTAT TGGGTTCAAG 721 TCCCATAGAA TTATGGCCTA ATGTGCCTTG TATGGATAAG ACATTGAGTT TGAGTCTC Predicted gene structure (within gDNA segment 80423 to 73309): Exon 1 80136 80114 ( 23 n); cDNA 399 419 ( 21 n); score: 0.652 Intron 1 80113 78532 (1582 n); Pd: 0.465 (s: 0), Pa: 0.470 (s: 0) Exon 2 78531 78519 ( 13 n); cDNA 420 431 ( 12 n); score: 0.615 Intron 2 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 3 78091 78087 ( 5 n); cDNA 432 436 ( 5 n); score: 1.000 Intron 3 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 76724 76683 ( 42 n); cDNA 437 477 ( 41 n); score: 0.643 Intron 4 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 5 76260 76175 ( 86 n); cDNA 478 564 ( 87 n); score: 0.570 Intron 5 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 6 75604 75559 ( 46 n); cDNA 565 607 ( 43 n); score: 0.630 Intron 6 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 7 74177 74090 ( 88 n); cDNA 608 695 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E260587- 0.759 303 0.389 C PGS_C09HBa0099P03.1-2-_SGN-E260587- (80136 80114,78531 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): ATTTGTGACA CACTTAGCAA GCTGTACTTT AACCCATCCA CATGGTAAAC ATTGTCAATT 80077 ||| | ||| ||| || ||| ATTCGATACA TTCTT-GC-T GCT....... .......... .......... .......... 419 GAATCTTCAA GAGATCTTCC TACTTTGCCA ACTCCCAAAA TGTACCCCTT CTTGCCATCA 80017 .......... .......... .......... .......... .......... .......... 419 CCAAATGAGA CACCTCCTCC TTGGAGGGTC TTGAGTGAGA GGAAGTTCTT TACATCACCA 79957 .......... .......... .......... .......... .......... .......... 419 GTCATATGTT TAGAGCAGCC ACTATCCATA TACCAACATT GTCTGCTGCT CCTCTCACTC 79897 .......... .......... .......... .......... .......... .......... 419 ACCTGCATCA AAAATCACTT GTTAAGCTTG GGAACTCATT TCAGCTTGAG TTCCCAGTAG 79837 .......... .......... .......... .......... .......... .......... 419 GCAAACAAAG GAGTGATCAG ATTGTACTTG GTCCAATATG GTAGACTTTG AATCTTTCTA 79777 .......... .......... .......... .......... .......... .......... 419 ACAAAGGACC TAGGAGCAGG AACAGATTTT TTCTTTGAAA ATCTGTGAGT TGAGACAGGA 79717 .......... .......... .......... .......... .......... .......... 419 TCTGTAGGAC CAGGTCTCTC ATTTGGTACA TTTTTTCTTT CAGCATACTT AAGAGTATCT 79657 .......... .......... .......... .......... .......... .......... 419 CTCACATGAG TTTCTCCAGC TAACACACTC ATTCTTCAGA TGTCCATTCT TACCACAATG 79597 .......... .......... .......... .......... .......... .......... 419 CAGACACAAT AGATTGTCAG ACACAAACAC ATACTTACTG TGAGGATTAT AAAGAGGACT 79537 .......... .......... .......... .......... .......... .......... 419 TATGTTCAGA CTTCTTAGTC CTTTCTTATT GAAATTACTC TGATTTGTCA CATTTGACAG 79477 .......... .......... .......... .......... .......... .......... 419 CAACTTTGAG GATTTGATCC ACTTAAGAGA ATTTTCAAGC TCTTTCTTAA ATTTCACAAC 79417 .......... .......... .......... .......... .......... .......... 419 ATCCTGTTCT AATTTGTTAC TCTTTTCAAG TGACAAACTA AGATTTTTCT CAGAGTTTTT 79357 .......... .......... .......... .......... .......... .......... 419 CAATTTTTCT TGAATTTCAG CTTGCAGACT ATTTGGCTTT CCATTCAGAT TTTCAGCTTC 79297 .......... .......... .......... .......... .......... .......... 419 TTCAGTAATC TGACACAACT GGTTCTTAAG TTCGGAGTTT TTTAACTCTA GAGACACCAT 79237 .......... .......... .......... .......... .......... .......... 419 TCTTGACATT GTGTCTTCAA ATTGACCTTT GTTTTCAGTT AAAATTTCAA GTTCAGCAAT 79177 .......... .......... .......... .......... .......... .......... 419 TATGGTATCT TTTTCAGATG TTAACTCTAT CACAGAATCT AACATGACTT TTGACAAGGT 79117 .......... .......... .......... .......... .......... .......... 419 TCTCAATTTT TTAAGAGAAT ACTTATCCAA GTCAATTTTC ATGTCAAGAA GAGTTACCTG 79057 .......... .......... .......... .......... .......... .......... 419 ATTGTCTTCT TCTTCATTTT CTGTGTGTGC CATAAGAGCA AACATTTCAT TGAAGACAGT 78997 .......... .......... .......... .......... .......... .......... 419 TTCCTCCTCA TGCACAGCAA CCATTGACAC ATCTTTTGGC TCATCAGGAT CTTCTGAGTC 78937 .......... .......... .......... .......... .......... .......... 419 ACTAGAAGAA TCCCCTCATG CAGCAAGAGC CCTTTTGACA ACCATATCAG CAGCAACTTT 78877 .......... .......... .......... .......... .......... .......... 419 ACGATCTCTG TTACCAAGTA CCAGGTCCCT TCTGTTTTCT TTGTCACCCC TGTGTTTTTG 78817 .......... .......... .......... .......... .......... .......... 419 ATGTTCCTTG TTTTCATTCT TGAGTAAAGG ACACTCTCTG ATGAAGTGCC CAGACTTTCC 78757 .......... .......... .......... .......... .......... .......... 419 ACACTTGTAG CAAGTATCCC CTTGAGCAGC ATTGCGAGTC CCATTTGTTC CTCTTTTATA 78697 .......... .......... .......... .......... .......... .......... 419 CATTTTGTTT TTTCTCACAA TCTTTTGAAA TCTACTGATG AGATAAGCCA TATCATCATC 78637 .......... .......... .......... .......... .......... .......... 419 ATCACTTGAA TCTTCATCTG ATTTATACTT CAACATCAAT GACTTGTCCT TCTTGGCTTC 78577 .......... .......... .......... .......... .......... .......... 419 CTTTTTTGAC AAATCATAGT TTCGATTCAT CTCATGTGTT TTAAGATTAC CAATCAAGGC 78517 | | |||| || .......... .......... .......... .......... .....TTGAA -AATCGAG.. 431 ATCCATGGTC AGCACCTTCA AGTCCTTGGC TTCTGTAATG GCATCAACTT TGCTCTCCCA 78457 .......... .......... .......... .......... .......... .......... 431 GGACTTTGGA AGAATTCAAA GCACTTTCCT GACTTGTTTG GTCATGCTTA TAGGTTCACC 78397 .......... .......... .......... .......... .......... .......... 431 CAAACTTCGT AGCTCTTTTG TAATGGAAGA CAACTTGGTG AACATGTCAT GTATAGTTTC 78337 .......... .......... .......... .......... .......... .......... 431 TCCTTCCTTC ATTTTGAAGT TCTCATATCG TGAGGTGAGC ATGTCAATCT TGGATTCTTT 78277 .......... .......... .......... .......... .......... .......... 431 GACTTGTTCA GTTCCTTCAT GTGCAGTCAA CAAGCAATCC CAAATTTCTT TAGCAGACTC 78217 .......... .......... .......... .......... .......... .......... 431 ACAGGCTGAC ACTCTGTTGT ACTCATCAGG TCCTATCCCA CAGACCAGAA GAGTTTTAGC 78157 .......... .......... .......... .......... .......... .......... 431 TTTGAAACCC TTTTCAATCT TTTTCCTGTC AGCATCATCA TATTTCTGCC TGGGCTTTGG 78097 .......... .......... .......... .......... .......... .......... 431 AACAGTAATG GTCTTTTCTC CATCCTTTAC TTCCATCATT GGAACAAAGG GTCCATCTAG 78037 ||||| .....TAATG .......... .......... .......... .......... .......... 436 TATAATATCC CATAACTCGC TATCTTCAGC CATGAGATAG TCGTGCATTC TAACTTTCCA 77977 .......... .......... .......... .......... .......... .......... 436 CCAACTGTAG AAATGTCCAT TGAAACGAGG AGGTCTGTGT GATGACTGAC CTTCTTCGAG 77917 .......... .......... .......... .......... .......... .......... 436 GTTAAGTGGA GCTGCTATTC TTAGAACAAA ATCACTTCCT TGGTGTTAAC CAAATAGGTA 77857 .......... .......... .......... .......... .......... .......... 436 GTGCCTGCTC TGATACCACT TGATAGAATT TATGCCTTCA CTTATTAGTA ATGGACCAGG 77797 .......... .......... .......... .......... .......... .......... 436 TCTCTTACTT TACTTCAGAA AATTACCAGA AAGTTAAATG CAGTAAAATT AACACAATGA 77737 .......... .......... .......... .......... .......... .......... 436 TTTTACGTGG AAACCTCCTT GCTTAAGGGA GTAAAACCAC GACCTATCTC ACAGGATTTT 77677 .......... .......... .......... .......... .......... .......... 436 CAATCGTTTT CACTAATCTT CAAAAGCAAA AGCGAAACAC GATTACACCA AACGTAAGAA 77617 .......... .......... .......... .......... .......... .......... 436 AGAGTTATCA ATCTTACCGT TAAGCAATAG ACCTCTATTG CTCAACAAGC CAAAGTAGAA 77557 .......... .......... .......... .......... .......... .......... 436 AAACAATCTA CCCACTAAGC TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC 77497 .......... .......... .......... .......... .......... .......... 436 AATTCCTTTA TAGATTTAGG AGTGGTTTAC AATTTAAGAA CAAGAGAATA AATTCCTAAA 77437 .......... .......... .......... .......... .......... .......... 436 CAACTAGACG AAAAGCTCCA GATGTTGCTG TTGTCCTAGG AATGATTCTG CCTTTGCTTT 77377 .......... .......... .......... .......... .......... .......... 436 GTGTAGCCTT TGCAAGAGTT CTTGAAAAGT TTTTATCAAG TTGCAAAAAC TGAAAGACAA 77317 .......... .......... .......... .......... .......... .......... 436 ATGTTTAGGA AAGTGCCTTT TATATGGGCA AGTCACTTTC CTAAACTTCT TTGCCATTGG 77257 .......... .......... .......... .......... .......... .......... 436 TTGGAAAGGT CACACTTTTC TGACGCCATC GAGAAGTGTG CACCTACTTT CTGTACGTCT 77197 .......... .......... .......... .......... .......... .......... 436 CCAATTGGCA GTTGACTGGC TCATCATCAT GAGGGCCTGG TACCTCTACT AGGTCCCTGA 77137 .......... .......... .......... .......... .......... .......... 436 GTTTGTTTCA TCTGCAATAC TTCAAACAAG ACACCTGCAA TACTCAAGTA GAAAACCCGG 77077 .......... .......... .......... .......... .......... .......... 436 TACCTTTATG AGGTCCCTAA GTTTGTCAAA TTATCAAAAC TACAAATAAC AAATATGTAT 77017 .......... .......... .......... .......... .......... .......... 436 GATGTTTCTA TAATAGCGTG AGAAGGTGAT TAAAAATTTA GATGTTTTAA TTTGTATTAC 76957 .......... .......... .......... .......... .......... .......... 436 TTTGACTTGA CATGGTAATA TTCACAATCT ATTGTAAAAA AATATATATA TTAGAGTGAC 76897 .......... .......... .......... .......... .......... .......... 436 GCTTTCATAA TTGTGTTTTA GTTTTTGAAG AAGAACTCAT TTATTTGTAA AGCCCAAGTT 76837 .......... .......... .......... .......... .......... .......... 436 AATGATTCAG TCCAAATGAA AATGAATTTA ATTCAAATTT TGTATGAATT TGATCTAATT 76777 .......... .......... .......... .......... .......... .......... 436 ACAATGTATG TGTCTACAAT ATTAACGCTA CTCCCCTATC TTTATATATA GATGATCCAT 76717 ||| | | .......... .......... .......... .......... .......... ..TGAATCTT 444 TTGGTTCATA TGTATATGTA TATAGAAATA ACTATGAAGA GAGTATTTTC AATATTGGTG 76657 ||| | |||| | |||| | | ||| || || TTGATGCATA T-AATATCCA TTAGGAAGTA GCTC...... .......... .......... 477 GACTCAAGTA TAGTACACAA CATTTTATGA TGACGGAACT ATTTACTACT ATTAAGAAGG 76597 .......... .......... .......... .......... .......... .......... 477 GAGTGACGAT CCATGGGACT ACGATAAACT ATTGAGAAAG GGTGAATTGA TCATAATATT 76537 .......... .......... .......... .......... .......... .......... 477 ATGGTGGAAT TAGAATGTAA GTTGACAATT TTATATCCGA TTATCAGTTT ATTCATACGT 76477 .......... .......... .......... .......... .......... .......... 477 ATTTTTTGAA TCGGAATCGA AGGACTATGT GAGTTTCGTT TCCAACTCAT TAAACTGTTC 76417 .......... .......... .......... .......... .......... .......... 477 GTTTTTATGA CTTCAAAATA GAGAGATATT CACGTTTGTG CCTCTTCAAG AGCTTTGGAC 76357 .......... .......... .......... .......... .......... .......... 477 CGGCCATAAC ATTCGAAATT GGAGAAAAAA ATTAAGGAAA CTCTTATTTT ATCTGTAGAA 76297 .......... .......... .......... .......... .......... .......... 477 TAATACTTAA TTTTTTAGCC ACATTTTTTT CATCAGTCTT CTGCACTACT AATGAAGAAA 76237 |||| |||||| | | | || | .......... .......... .......... ......TCTT CTGCACAAAT ATATAATATT 501 AGG-GATTAC TTTTTGTGTG AGTTGGAGAA AGTTGAATGA ATTTACTATA A-AAAAAAAC 76179 | | | ||| || | | || || | ||| || | || || ||| | |||||||| GTTCAAATGC TTTATGAAAG TGATGAAG-C ACTTGCATCA TTTAACCATA AGAAAAAAAC 560 AAATATCCAA TTCCCATTAT TTACTTGTTA AATTACGAGT GAACAATGAA CCCAATTGAA 76119 | TCAA...... .......... .......... .......... .......... .......... 564 TAATTTAACA AAATAAATTT GAGAAAAATG TTTGAAAAAC GTTTTAATTT TGGTCGAAAT 76059 .......... .......... .......... .......... .......... .......... 564 TGATGTTACG AAATCAAATT TTATAGATGA TCTTTTACGT ATTTTAAAGG TATATATATG 75999 .......... .......... .......... .......... .......... .......... 564 TGCCCATGTG GACACATTAA TATTTATAAT GATACAATAT TTGTGATGTC CATGTGAATA 75939 .......... .......... .......... .......... .......... .......... 564 TATATATATA TATTTAAAAT ACACTATCAA ATAGAATAGG GATAAAAAAT TATTTTCAAA 75879 .......... .......... .......... .......... .......... .......... 564 ATTCAATATT ATGACAATAA TCTCAATTAA AATTTGAATA TATTTCAAAT TTTTTTTTTC 75819 .......... .......... .......... .......... .......... .......... 564 AATAAATTTT AAAAGTTGGA TCAAACGTGT TACTGTTAAT ATTAACAAAG AAAAGAGTTC 75759 .......... .......... .......... .......... .......... .......... 564 GTCGTAATAC TACTGAATTA TTGTCCTAAA AAAATGGAGA AAAATTATTG TAATGCATTA 75699 .......... .......... .......... .......... .......... .......... 564 ATTACGGACA GATATTAGAT AATGTAGACC CACCATTATA TAAATTGACT ATGTGAATTG 75639 .......... .......... .......... .......... .......... .......... 564 AAACAAAATG TCTAAAAAGG TTGTCAAATT CCAGGTATTT GATCTCATCT TATTATAAAA 75579 ||| | ||| || | | || ||||| .......... .......... .......... ....ATATGT TATCAAAT-T TGTT-TAAAA 588 AAAACTAATA ATTGTTCCAG ATATTCGTGG CATAACAAAA TAATTGATAC ACATGCAATG 75519 || ||| || ||| | AAGACTCATT TATGT-CATT .......... .......... .......... .......... 607 TTTTATCTTC TAGAAAACAC TTGAAATTAT TTAATAAAAT CTTCTTAACT TGTTGAAGTG 75459 .......... .......... .......... .......... .......... .......... 607 TATTGATTAG AAGTGATATG AAAAAGAAAA AAGAACATAT GATAACACCC ATAACTCTTT 75399 .......... .......... .......... .......... .......... .......... 607 TGCACCTCAC CTATATATTT TACTAATTTC ACAATTTTAT TCTTTTAGTG TTTTTTTATT 75339 .......... .......... .......... .......... .......... .......... 607 TTTATTTCTA CTTGAGCAAA AAATGATATA AGTTTCTGAA AGAAAAAAAA ATAAAACTTT 75279 .......... .......... .......... .......... .......... .......... 607 ATTAAAGAGG TATTTTTTAT ACTATTGTTG ATTAAGAAAA ACTAGGCACG AGAATCACCG 75219 .......... .......... .......... .......... .......... .......... 607 CTTAAATATA TAATTTTTAA ATAAAGAGGT ATTATTTGCG TATAAAAATA TTTACTTTGA 75159 .......... .......... .......... .......... .......... .......... 607 TATAATTTTT AAATATTTCT TATATTTAAG TTTGAAACTT AGAATTTTGG ATGGTTCCAT 75099 .......... .......... .......... .......... .......... .......... 607 AAATATTATA GTCCACATGT GTTGGTAATT ATAATAAAAC TCAAATCAAA ATTAAATTAA 75039 .......... .......... .......... .......... .......... .......... 607 TATTGATGCA AAAAGGAAAT CTATTTAGCA TTAAGAATGA CAATAATATT AAATATTTGT 74979 .......... .......... .......... .......... .......... .......... 607 TCTTTGATTT TACGTTGATT TAGACAATTG AAATACATAA TCTAATTTTA ATTTTCTTTA 74919 .......... .......... .......... .......... .......... .......... 607 ATATTTAGTC ATGTAACTAA TGCTTATTTG TTATAAATTC ATTGAATGAG TGGATAGTCC 74859 .......... .......... .......... .......... .......... .......... 607 ATAAGGTTGG TACATGAACA ACCATTCATA TTCACTAGGT TACATGAACC TTTTTGGATA 74799 .......... .......... .......... .......... .......... .......... 607 AGAATGTATC TATTTACTAT GATACTTAAT ATGGTAACCT TTGGAGTGAT TTCTCACTCT 74739 .......... .......... .......... .......... .......... .......... 607 ATAAATAGGG TTGTTCATTC AGTATTGTAA TAGATACATA TGAGACTTGA ATACACTTGA 74679 .......... .......... .......... .......... .......... .......... 607 ATAAGAAGAA AATTCCTCTT CTTCTATATA CTTCTCTTAT CTTCTTCTCT TTATGATTAT 74619 .......... .......... .......... .......... .......... .......... 607 ATTCTTATGA GCTTGATTTT ATAACACGTT ATCAGCACGA GTCTCTATCT AATTGAGAGT 74559 .......... .......... .......... .......... .......... .......... 607 GGGTTCTTGT TTTTCTTTAG CTCATATTTT GGTTGATCTC GTTATGAAGA TCAAAGTATT 74499 .......... .......... .......... .......... .......... .......... 607 ATATGCATAA AATCAGGTAT GTATTTTCTA AAATATTTTA TGATTTAGAA TAAAATAGTA 74439 .......... .......... .......... .......... .......... .......... 607 TTCAATCACT AATAATTATC AGGAACCGAA GACATATACT ACTATTGGTT GAATATGACA 74379 .......... .......... .......... .......... .......... .......... 607 TGCTATACAA AACTTCTTAA ATAGAAGAAG GTATAAAATT TTAATAGCAT GAATTTGAAT 74319 .......... .......... .......... .......... .......... .......... 607 GTTATTTTGA TTGTTTTGAA TGACTCAAAG GGTGAGTCAT GTTGTACTTC GGTTTATTAT 74259 .......... .......... .......... .......... .......... .......... 607 ACCGTTGGTT AAGGGTAAGA CGATGAATTC AAGTTTCATC GCACCAAAAG GGTAAGACAT 74199 .......... .......... .......... .......... .......... .......... 607 CAGGTTAAAG TCCGGATGCA CCATAATGAA AAATATTTGA GGATAAGACG ATAGATTCAA 74139 ||| ||||| |||||||||| || ||||||| ||||||||| .......... .......... .CATTATGAA AAATATTTGA GGGTAAGACG GTAGATTCAA 646 GTTCTATCGC ACCAAAAGGG TAAGACATCA ATTTGAGTTT TGATGCACC 74090 |||||||||| ||||| |||| |||||||||| ||| |||||| ||||||||| GTTCTATCGC ACCAAGAGGG TAAGACATCA ATTCGAGTTT TGATGCACC 695 hqPGS_C09HBa0099P03.1-2-_SGN-E260587- (74177 74090) ******************************************************************************** EST sequence 62 -strand 740 n (File: SGN-E260602-) 1 ATCGAGCGTT GAAGGAAAAA TGAATAAAAA TAAGCTTACA TGTTTGATAA ATGGGAGAAT 61 TAGCCCACAT AATGCTGCAT CGCAATGGAT ATAATAATTG TCATTTGAAT AACCACAATT 121 TTCAAGTGTT TGTATGCCGA AATCGAGGTC ATCAATAGCT CCTCTGAAGG TTGTTCCTAT 181 AAACACATAT ATACTAATTT ACCAAAAGTG ATGTTATAAG ATGTAAGAAT ATATATGTAT 241 GTATTTTTAC CAATATTGAT ATTGATGATA GCTGGTTTGT TCTTGTTGAC AAGTAACTTT 301 GATTGTAAAT CTTCATAATC AATTTCCCCA TTAACTAAAG TGTTGATAGT TTGTAGCTCC 361 ATTCGATACA TTCTTGCTGC TTTGAAAATC GAGTAATGTG AATCTTTTGA TGCATATAAT 421 ATCCATTAGG AAGTAGCTCT CTTCTGCACA AATATATAAT ATTGTTCAAA TGCTTTATGA 481 AAGTGATGAA GCACTTGCAT CATTTAACCA TAAGAAAAAA ACTCAAATAT GTTATCAAAT 541 TTGTTTAAAA AAGACTCATT TATGTCATTC ATTATGAAAA ATATTTGAGG GTAAGACGGT 601 AGATTCAAGT TCTATCGCAC CAAGAGGGTA AGACATCAAT TCGAGTTTTG ATGCACCATA 661 ATGATAAGGT ATTGGGTTCA AGTCCCATAG AATTATGGCC TAATGTGCCT TGTATGGATA 721 AGACATTGAG TTTGAGTCTC Predicted gene structure (within gDNA segment 80423 to 73309): Exon 1 80136 80114 ( 23 n); cDNA 361 381 ( 21 n); score: 0.652 Intron 1 80113 78532 (1582 n); Pd: 0.465 (s: 0), Pa: 0.470 (s: 0) Exon 2 78531 78519 ( 13 n); cDNA 382 393 ( 12 n); score: 0.615 Intron 2 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 3 78091 78087 ( 5 n); cDNA 394 398 ( 5 n); score: 1.000 Intron 3 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 4 76724 76683 ( 42 n); cDNA 399 439 ( 41 n); score: 0.643 Intron 4 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 5 76260 76175 ( 86 n); cDNA 440 526 ( 87 n); score: 0.570 Intron 5 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 6 75604 75559 ( 46 n); cDNA 527 569 ( 43 n); score: 0.630 Intron 6 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 7 74177 74090 ( 88 n); cDNA 570 657 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E260602- 0.759 303 0.409 C PGS_C09HBa0099P03.1-2-_SGN-E260602- (80136 80114,78531 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): ATTTGTGACA CACTTAGCAA GCTGTACTTT AACCCATCCA CATGGTAAAC ATTGTCAATT 80077 ||| | ||| ||| || ||| ATTCGATACA TTCTT-GC-T GCT....... .......... .......... .......... 381 GAATCTTCAA GAGATCTTCC TACTTTGCCA ACTCCCAAAA TGTACCCCTT CTTGCCATCA 80017 .......... .......... .......... .......... .......... .......... 381 CCAAATGAGA CACCTCCTCC TTGGAGGGTC TTGAGTGAGA GGAAGTTCTT TACATCACCA 79957 .......... .......... .......... .......... .......... .......... 381 GTCATATGTT TAGAGCAGCC ACTATCCATA TACCAACATT GTCTGCTGCT CCTCTCACTC 79897 .......... .......... .......... .......... .......... .......... 381 ACCTGCATCA AAAATCACTT GTTAAGCTTG GGAACTCATT TCAGCTTGAG TTCCCAGTAG 79837 .......... .......... .......... .......... .......... .......... 381 GCAAACAAAG GAGTGATCAG ATTGTACTTG GTCCAATATG GTAGACTTTG AATCTTTCTA 79777 .......... .......... .......... .......... .......... .......... 381 ACAAAGGACC TAGGAGCAGG AACAGATTTT TTCTTTGAAA ATCTGTGAGT TGAGACAGGA 79717 .......... .......... .......... .......... .......... .......... 381 TCTGTAGGAC CAGGTCTCTC ATTTGGTACA TTTTTTCTTT CAGCATACTT AAGAGTATCT 79657 .......... .......... .......... .......... .......... .......... 381 CTCACATGAG TTTCTCCAGC TAACACACTC ATTCTTCAGA TGTCCATTCT TACCACAATG 79597 .......... .......... .......... .......... .......... .......... 381 CAGACACAAT AGATTGTCAG ACACAAACAC ATACTTACTG TGAGGATTAT AAAGAGGACT 79537 .......... .......... .......... .......... .......... .......... 381 TATGTTCAGA CTTCTTAGTC CTTTCTTATT GAAATTACTC TGATTTGTCA CATTTGACAG 79477 .......... .......... .......... .......... .......... .......... 381 CAACTTTGAG GATTTGATCC ACTTAAGAGA ATTTTCAAGC TCTTTCTTAA ATTTCACAAC 79417 .......... .......... .......... .......... .......... .......... 381 ATCCTGTTCT AATTTGTTAC TCTTTTCAAG TGACAAACTA AGATTTTTCT CAGAGTTTTT 79357 .......... .......... .......... .......... .......... .......... 381 CAATTTTTCT TGAATTTCAG CTTGCAGACT ATTTGGCTTT CCATTCAGAT TTTCAGCTTC 79297 .......... .......... .......... .......... .......... .......... 381 TTCAGTAATC TGACACAACT GGTTCTTAAG TTCGGAGTTT TTTAACTCTA GAGACACCAT 79237 .......... .......... .......... .......... .......... .......... 381 TCTTGACATT GTGTCTTCAA ATTGACCTTT GTTTTCAGTT AAAATTTCAA GTTCAGCAAT 79177 .......... .......... .......... .......... .......... .......... 381 TATGGTATCT TTTTCAGATG TTAACTCTAT CACAGAATCT AACATGACTT TTGACAAGGT 79117 .......... .......... .......... .......... .......... .......... 381 TCTCAATTTT TTAAGAGAAT ACTTATCCAA GTCAATTTTC ATGTCAAGAA GAGTTACCTG 79057 .......... .......... .......... .......... .......... .......... 381 ATTGTCTTCT TCTTCATTTT CTGTGTGTGC CATAAGAGCA AACATTTCAT TGAAGACAGT 78997 .......... .......... .......... .......... .......... .......... 381 TTCCTCCTCA TGCACAGCAA CCATTGACAC ATCTTTTGGC TCATCAGGAT CTTCTGAGTC 78937 .......... .......... .......... .......... .......... .......... 381 ACTAGAAGAA TCCCCTCATG CAGCAAGAGC CCTTTTGACA ACCATATCAG CAGCAACTTT 78877 .......... .......... .......... .......... .......... .......... 381 ACGATCTCTG TTACCAAGTA CCAGGTCCCT TCTGTTTTCT TTGTCACCCC TGTGTTTTTG 78817 .......... .......... .......... .......... .......... .......... 381 ATGTTCCTTG TTTTCATTCT TGAGTAAAGG ACACTCTCTG ATGAAGTGCC CAGACTTTCC 78757 .......... .......... .......... .......... .......... .......... 381 ACACTTGTAG CAAGTATCCC CTTGAGCAGC ATTGCGAGTC CCATTTGTTC CTCTTTTATA 78697 .......... .......... .......... .......... .......... .......... 381 CATTTTGTTT TTTCTCACAA TCTTTTGAAA TCTACTGATG AGATAAGCCA TATCATCATC 78637 .......... .......... .......... .......... .......... .......... 381 ATCACTTGAA TCTTCATCTG ATTTATACTT CAACATCAAT GACTTGTCCT TCTTGGCTTC 78577 .......... .......... .......... .......... .......... .......... 381 CTTTTTTGAC AAATCATAGT TTCGATTCAT CTCATGTGTT TTAAGATTAC CAATCAAGGC 78517 | | |||| || .......... .......... .......... .......... .....TTGAA -AATCGAG.. 393 ATCCATGGTC AGCACCTTCA AGTCCTTGGC TTCTGTAATG GCATCAACTT TGCTCTCCCA 78457 .......... .......... .......... .......... .......... .......... 393 GGACTTTGGA AGAATTCAAA GCACTTTCCT GACTTGTTTG GTCATGCTTA TAGGTTCACC 78397 .......... .......... .......... .......... .......... .......... 393 CAAACTTCGT AGCTCTTTTG TAATGGAAGA CAACTTGGTG AACATGTCAT GTATAGTTTC 78337 .......... .......... .......... .......... .......... .......... 393 TCCTTCCTTC ATTTTGAAGT TCTCATATCG TGAGGTGAGC ATGTCAATCT TGGATTCTTT 78277 .......... .......... .......... .......... .......... .......... 393 GACTTGTTCA GTTCCTTCAT GTGCAGTCAA CAAGCAATCC CAAATTTCTT TAGCAGACTC 78217 .......... .......... .......... .......... .......... .......... 393 ACAGGCTGAC ACTCTGTTGT ACTCATCAGG TCCTATCCCA CAGACCAGAA GAGTTTTAGC 78157 .......... .......... .......... .......... .......... .......... 393 TTTGAAACCC TTTTCAATCT TTTTCCTGTC AGCATCATCA TATTTCTGCC TGGGCTTTGG 78097 .......... .......... .......... .......... .......... .......... 393 AACAGTAATG GTCTTTTCTC CATCCTTTAC TTCCATCATT GGAACAAAGG GTCCATCTAG 78037 ||||| .....TAATG .......... .......... .......... .......... .......... 398 TATAATATCC CATAACTCGC TATCTTCAGC CATGAGATAG TCGTGCATTC TAACTTTCCA 77977 .......... .......... .......... .......... .......... .......... 398 CCAACTGTAG AAATGTCCAT TGAAACGAGG AGGTCTGTGT GATGACTGAC CTTCTTCGAG 77917 .......... .......... .......... .......... .......... .......... 398 GTTAAGTGGA GCTGCTATTC TTAGAACAAA ATCACTTCCT TGGTGTTAAC CAAATAGGTA 77857 .......... .......... .......... .......... .......... .......... 398 GTGCCTGCTC TGATACCACT TGATAGAATT TATGCCTTCA CTTATTAGTA ATGGACCAGG 77797 .......... .......... .......... .......... .......... .......... 398 TCTCTTACTT TACTTCAGAA AATTACCAGA AAGTTAAATG CAGTAAAATT AACACAATGA 77737 .......... .......... .......... .......... .......... .......... 398 TTTTACGTGG AAACCTCCTT GCTTAAGGGA GTAAAACCAC GACCTATCTC ACAGGATTTT 77677 .......... .......... .......... .......... .......... .......... 398 CAATCGTTTT CACTAATCTT CAAAAGCAAA AGCGAAACAC GATTACACCA AACGTAAGAA 77617 .......... .......... .......... .......... .......... .......... 398 AGAGTTATCA ATCTTACCGT TAAGCAATAG ACCTCTATTG CTCAACAAGC CAAAGTAGAA 77557 .......... .......... .......... .......... .......... .......... 398 AAACAATCTA CCCACTAAGC TATCCCACCT GGACAACCTA GACTTTTAAC ACAACACACC 77497 .......... .......... .......... .......... .......... .......... 398 AATTCCTTTA TAGATTTAGG AGTGGTTTAC AATTTAAGAA CAAGAGAATA AATTCCTAAA 77437 .......... .......... .......... .......... .......... .......... 398 CAACTAGACG AAAAGCTCCA GATGTTGCTG TTGTCCTAGG AATGATTCTG CCTTTGCTTT 77377 .......... .......... .......... .......... .......... .......... 398 GTGTAGCCTT TGCAAGAGTT CTTGAAAAGT TTTTATCAAG TTGCAAAAAC TGAAAGACAA 77317 .......... .......... .......... .......... .......... .......... 398 ATGTTTAGGA AAGTGCCTTT TATATGGGCA AGTCACTTTC CTAAACTTCT TTGCCATTGG 77257 .......... .......... .......... .......... .......... .......... 398 TTGGAAAGGT CACACTTTTC TGACGCCATC GAGAAGTGTG CACCTACTTT CTGTACGTCT 77197 .......... .......... .......... .......... .......... .......... 398 CCAATTGGCA GTTGACTGGC TCATCATCAT GAGGGCCTGG TACCTCTACT AGGTCCCTGA 77137 .......... .......... .......... .......... .......... .......... 398 GTTTGTTTCA TCTGCAATAC TTCAAACAAG ACACCTGCAA TACTCAAGTA GAAAACCCGG 77077 .......... .......... .......... .......... .......... .......... 398 TACCTTTATG AGGTCCCTAA GTTTGTCAAA TTATCAAAAC TACAAATAAC AAATATGTAT 77017 .......... .......... .......... .......... .......... .......... 398 GATGTTTCTA TAATAGCGTG AGAAGGTGAT TAAAAATTTA GATGTTTTAA TTTGTATTAC 76957 .......... .......... .......... .......... .......... .......... 398 TTTGACTTGA CATGGTAATA TTCACAATCT ATTGTAAAAA AATATATATA TTAGAGTGAC 76897 .......... .......... .......... .......... .......... .......... 398 GCTTTCATAA TTGTGTTTTA GTTTTTGAAG AAGAACTCAT TTATTTGTAA AGCCCAAGTT 76837 .......... .......... .......... .......... .......... .......... 398 AATGATTCAG TCCAAATGAA AATGAATTTA ATTCAAATTT TGTATGAATT TGATCTAATT 76777 .......... .......... .......... .......... .......... .......... 398 ACAATGTATG TGTCTACAAT ATTAACGCTA CTCCCCTATC TTTATATATA GATGATCCAT 76717 ||| | | .......... .......... .......... .......... .......... ..TGAATCTT 406 TTGGTTCATA TGTATATGTA TATAGAAATA ACTATGAAGA GAGTATTTTC AATATTGGTG 76657 ||| | |||| | |||| | | ||| || || TTGATGCATA T-AATATCCA TTAGGAAGTA GCTC...... .......... .......... 439 GACTCAAGTA TAGTACACAA CATTTTATGA TGACGGAACT ATTTACTACT ATTAAGAAGG 76597 .......... .......... .......... .......... .......... .......... 439 GAGTGACGAT CCATGGGACT ACGATAAACT ATTGAGAAAG GGTGAATTGA TCATAATATT 76537 .......... .......... .......... .......... .......... .......... 439 ATGGTGGAAT TAGAATGTAA GTTGACAATT TTATATCCGA TTATCAGTTT ATTCATACGT 76477 .......... .......... .......... .......... .......... .......... 439 ATTTTTTGAA TCGGAATCGA AGGACTATGT GAGTTTCGTT TCCAACTCAT TAAACTGTTC 76417 .......... .......... .......... .......... .......... .......... 439 GTTTTTATGA CTTCAAAATA GAGAGATATT CACGTTTGTG CCTCTTCAAG AGCTTTGGAC 76357 .......... .......... .......... .......... .......... .......... 439 CGGCCATAAC ATTCGAAATT GGAGAAAAAA ATTAAGGAAA CTCTTATTTT ATCTGTAGAA 76297 .......... .......... .......... .......... .......... .......... 439 TAATACTTAA TTTTTTAGCC ACATTTTTTT CATCAGTCTT CTGCACTACT AATGAAGAAA 76237 |||| |||||| | | | || | .......... .......... .......... ......TCTT CTGCACAAAT ATATAATATT 463 AGG-GATTAC TTTTTGTGTG AGTTGGAGAA AGTTGAATGA ATTTACTATA A-AAAAAAAC 76179 | | | ||| || | | || || | ||| || | || || ||| | |||||||| GTTCAAATGC TTTATGAAAG TGATGAAG-C ACTTGCATCA TTTAACCATA AGAAAAAAAC 522 AAATATCCAA TTCCCATTAT TTACTTGTTA AATTACGAGT GAACAATGAA CCCAATTGAA 76119 | TCAA...... .......... .......... .......... .......... .......... 526 TAATTTAACA AAATAAATTT GAGAAAAATG TTTGAAAAAC GTTTTAATTT TGGTCGAAAT 76059 .......... .......... .......... .......... .......... .......... 526 TGATGTTACG AAATCAAATT TTATAGATGA TCTTTTACGT ATTTTAAAGG TATATATATG 75999 .......... .......... .......... .......... .......... .......... 526 TGCCCATGTG GACACATTAA TATTTATAAT GATACAATAT TTGTGATGTC CATGTGAATA 75939 .......... .......... .......... .......... .......... .......... 526 TATATATATA TATTTAAAAT ACACTATCAA ATAGAATAGG GATAAAAAAT TATTTTCAAA 75879 .......... .......... .......... .......... .......... .......... 526 ATTCAATATT ATGACAATAA TCTCAATTAA AATTTGAATA TATTTCAAAT TTTTTTTTTC 75819 .......... .......... .......... .......... .......... .......... 526 AATAAATTTT AAAAGTTGGA TCAAACGTGT TACTGTTAAT ATTAACAAAG AAAAGAGTTC 75759 .......... .......... .......... .......... .......... .......... 526 GTCGTAATAC TACTGAATTA TTGTCCTAAA AAAATGGAGA AAAATTATTG TAATGCATTA 75699 .......... .......... .......... .......... .......... .......... 526 ATTACGGACA GATATTAGAT AATGTAGACC CACCATTATA TAAATTGACT ATGTGAATTG 75639 .......... .......... .......... .......... .......... .......... 526 AAACAAAATG TCTAAAAAGG TTGTCAAATT CCAGGTATTT GATCTCATCT TATTATAAAA 75579 ||| | ||| || | | || ||||| .......... .......... .......... ....ATATGT TATCAAAT-T TGTT-TAAAA 550 AAAACTAATA ATTGTTCCAG ATATTCGTGG CATAACAAAA TAATTGATAC ACATGCAATG 75519 || ||| || ||| | AAGACTCATT TATGT-CATT .......... .......... .......... .......... 569 TTTTATCTTC TAGAAAACAC TTGAAATTAT TTAATAAAAT CTTCTTAACT TGTTGAAGTG 75459 .......... .......... .......... .......... .......... .......... 569 TATTGATTAG AAGTGATATG AAAAAGAAAA AAGAACATAT GATAACACCC ATAACTCTTT 75399 .......... .......... .......... .......... .......... .......... 569 TGCACCTCAC CTATATATTT TACTAATTTC ACAATTTTAT TCTTTTAGTG TTTTTTTATT 75339 .......... .......... .......... .......... .......... .......... 569 TTTATTTCTA CTTGAGCAAA AAATGATATA AGTTTCTGAA AGAAAAAAAA ATAAAACTTT 75279 .......... .......... .......... .......... .......... .......... 569 ATTAAAGAGG TATTTTTTAT ACTATTGTTG ATTAAGAAAA ACTAGGCACG AGAATCACCG 75219 .......... .......... .......... .......... .......... .......... 569 CTTAAATATA TAATTTTTAA ATAAAGAGGT ATTATTTGCG TATAAAAATA TTTACTTTGA 75159 .......... .......... .......... .......... .......... .......... 569 TATAATTTTT AAATATTTCT TATATTTAAG TTTGAAACTT AGAATTTTGG ATGGTTCCAT 75099 .......... .......... .......... .......... .......... .......... 569 AAATATTATA GTCCACATGT GTTGGTAATT ATAATAAAAC TCAAATCAAA ATTAAATTAA 75039 .......... .......... .......... .......... .......... .......... 569 TATTGATGCA AAAAGGAAAT CTATTTAGCA TTAAGAATGA CAATAATATT AAATATTTGT 74979 .......... .......... .......... .......... .......... .......... 569 TCTTTGATTT TACGTTGATT TAGACAATTG AAATACATAA TCTAATTTTA ATTTTCTTTA 74919 .......... .......... .......... .......... .......... .......... 569 ATATTTAGTC ATGTAACTAA TGCTTATTTG TTATAAATTC ATTGAATGAG TGGATAGTCC 74859 .......... .......... .......... .......... .......... .......... 569 ATAAGGTTGG TACATGAACA ACCATTCATA TTCACTAGGT TACATGAACC TTTTTGGATA 74799 .......... .......... .......... .......... .......... .......... 569 AGAATGTATC TATTTACTAT GATACTTAAT ATGGTAACCT TTGGAGTGAT TTCTCACTCT 74739 .......... .......... .......... .......... .......... .......... 569 ATAAATAGGG TTGTTCATTC AGTATTGTAA TAGATACATA TGAGACTTGA ATACACTTGA 74679 .......... .......... .......... .......... .......... .......... 569 ATAAGAAGAA AATTCCTCTT CTTCTATATA CTTCTCTTAT CTTCTTCTCT TTATGATTAT 74619 .......... .......... .......... .......... .......... .......... 569 ATTCTTATGA GCTTGATTTT ATAACACGTT ATCAGCACGA GTCTCTATCT AATTGAGAGT 74559 .......... .......... .......... .......... .......... .......... 569 GGGTTCTTGT TTTTCTTTAG CTCATATTTT GGTTGATCTC GTTATGAAGA TCAAAGTATT 74499 .......... .......... .......... .......... .......... .......... 569 ATATGCATAA AATCAGGTAT GTATTTTCTA AAATATTTTA TGATTTAGAA TAAAATAGTA 74439 .......... .......... .......... .......... .......... .......... 569 TTCAATCACT AATAATTATC AGGAACCGAA GACATATACT ACTATTGGTT GAATATGACA 74379 .......... .......... .......... .......... .......... .......... 569 TGCTATACAA AACTTCTTAA ATAGAAGAAG GTATAAAATT TTAATAGCAT GAATTTGAAT 74319 .......... .......... .......... .......... .......... .......... 569 GTTATTTTGA TTGTTTTGAA TGACTCAAAG GGTGAGTCAT GTTGTACTTC GGTTTATTAT 74259 .......... .......... .......... .......... .......... .......... 569 ACCGTTGGTT AAGGGTAAGA CGATGAATTC AAGTTTCATC GCACCAAAAG GGTAAGACAT 74199 .......... .......... .......... .......... .......... .......... 569 CAGGTTAAAG TCCGGATGCA CCATAATGAA AAATATTTGA GGATAAGACG ATAGATTCAA 74139 ||| ||||| |||||||||| || ||||||| ||||||||| .......... .......... .CATTATGAA AAATATTTGA GGGTAAGACG GTAGATTCAA 608 GTTCTATCGC ACCAAAAGGG TAAGACATCA ATTTGAGTTT TGATGCACC 74090 |||||||||| ||||| |||| |||||||||| ||| |||||| ||||||||| GTTCTATCGC ACCAAGAGGG TAAGACATCA ATTCGAGTTT TGATGCACC 657 hqPGS_C09HBa0099P03.1-2-_SGN-E260602- (74177 74090) ******************************************************************************** EST sequence 21 -strand 647 n (File: SGN-E255405-) 1 TAATTTTTTT TGCATGTTTG ATAAATGGGA GAATTAGCCC ACATAATGCT GCATCGCAAT 61 GGATATAATA ATTGTCATTT GAATAACCAC AATTTTCAAG TGTTTGTATG ACGAAATCGA 121 GGTCATCAAT AGCTCCTTTG AAGGTTGTTC CAATATTGAT ATTGATGATA GCTGGTTTGT 181 TCTTGTTGAC AAGTAACTTT GATTGTAAAT CTTCATAATC AATTTCCCCA TTAACTAAAG 241 TGTTGATAGT TTGTAGCTCC ATTCGATACA TTCTTGCTGC TTTGAAAATC GAGTAATGTG 301 AATCTTTTGA TGCATATAAT ATCCATTAGG AAGTAGCTCT CTTCTGCACA AATATATAAT 361 ATTGTTCAAA TGCTTTATGA AAGTGATGAA GCACTTGCAT CATTTAACCA TAAGAAAAAA 421 ACTCAAATAT GTTATCAAAT TTGTTTAAAA AAGACTCATT TATGTCATTC ATTATGAAAA 481 ATATTTGAGG GTAAGACGGT AGATTCAAGT TCTATCGCAC CAAGAGGGTA AGACATCAAT 541 TCGAGTTTTG ATGCACCATA ATGATAAGGT ATTGGGTTCA AGTCCCATAG AATTATGGCC 601 TAATGTGCCT TGTATGGATA AGACATTGAG TTTGAGTCTC CATGCAC Predicted gene structure (within gDNA segment 79513 to 73239): Exon 1 78530 78519 ( 12 n); cDNA 282 293 ( 12 n); score: 0.667 Intron 1 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 2 78091 78087 ( 5 n); cDNA 294 298 ( 5 n); score: 1.000 Intron 2 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 76724 76683 ( 42 n); cDNA 299 339 ( 41 n); score: 0.643 Intron 3 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 4 76260 76175 ( 86 n); cDNA 340 426 ( 87 n); score: 0.570 Intron 4 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 5 75604 75559 ( 46 n); cDNA 427 469 ( 43 n); score: 0.630 Intron 5 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 6 74177 74090 ( 88 n); cDNA 470 557 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E255405- 0.759 279 0.431 C PGS_C09HBa0099P03.1-2-_SGN-E255405- (78530 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): TTACCAATCA AGGCATCCAT GGTCAGCACC TTCAAGTCCT TGGCTTCTGT AATGGCATCA 78471 || |||| || TTGAAAATCG AG........ .......... .......... .......... .......... 293 ACTTTGCTCT CCCAGGACTT TGGAAGAATT CAAAGCACTT TCCTGACTTG TTTGGTCATG 78411 .......... .......... .......... .......... .......... .......... 293 CTTATAGGTT CACCCAAACT TCGTAGCTCT TTTGTAATGG AAGACAACTT GGTGAACATG 78351 .......... .......... .......... .......... .......... .......... 293 TCATGTATAG TTTCTCCTTC CTTCATTTTG AAGTTCTCAT ATCGTGAGGT GAGCATGTCA 78291 .......... .......... .......... .......... .......... .......... 293 ATCTTGGATT CTTTGACTTG TTCAGTTCCT TCATGTGCAG TCAACAAGCA ATCCCAAATT 78231 .......... .......... .......... .......... .......... .......... 293 TCTTTAGCAG ACTCACAGGC TGACACTCTG TTGTACTCAT CAGGTCCTAT CCCACAGACC 78171 .......... .......... .......... .......... .......... .......... 293 AGAAGAGTTT TAGCTTTGAA ACCCTTTTCA ATCTTTTTCC TGTCAGCATC ATCATATTTC 78111 .......... .......... .......... .......... .......... .......... 293 TGCCTGGGCT TTGGAACAGT AATGGTCTTT TCTCCATCCT TTACTTCCAT CATTGGAACA 78051 | |||| .......... .........T AATG...... .......... .......... .......... 298 AAGGGTCCAT CTAGTATAAT ATCCCATAAC TCGCTATCTT CAGCCATGAG ATAGTCGTGC 77991 .......... .......... .......... .......... .......... .......... 298 ATTCTAACTT TCCACCAACT GTAGAAATGT CCATTGAAAC GAGGAGGTCT GTGTGATGAC 77931 .......... .......... .......... .......... .......... .......... 298 TGACCTTCTT CGAGGTTAAG TGGAGCTGCT ATTCTTAGAA CAAAATCACT TCCTTGGTGT 77871 .......... .......... .......... .......... .......... .......... 298 TAACCAAATA GGTAGTGCCT GCTCTGATAC CACTTGATAG AATTTATGCC TTCACTTATT 77811 .......... .......... .......... .......... .......... .......... 298 AGTAATGGAC CAGGTCTCTT ACTTTACTTC AGAAAATTAC CAGAAAGTTA AATGCAGTAA 77751 .......... .......... .......... .......... .......... .......... 298 AATTAACACA ATGATTTTAC GTGGAAACCT CCTTGCTTAA GGGAGTAAAA CCACGACCTA 77691 .......... .......... .......... .......... .......... .......... 298 TCTCACAGGA TTTTCAATCG TTTTCACTAA TCTTCAAAAG CAAAAGCGAA ACACGATTAC 77631 .......... .......... .......... .......... .......... .......... 298 ACCAAACGTA AGAAAGAGTT ATCAATCTTA CCGTTAAGCA ATAGACCTCT ATTGCTCAAC 77571 .......... .......... .......... .......... .......... .......... 298 AAGCCAAAGT AGAAAAACAA TCTACCCACT AAGCTATCCC ACCTGGACAA CCTAGACTTT 77511 .......... .......... .......... .......... .......... .......... 298 TAACACAACA CACCAATTCC TTTATAGATT TAGGAGTGGT TTACAATTTA AGAACAAGAG 77451 .......... .......... .......... .......... .......... .......... 298 AATAAATTCC TAAACAACTA GACGAAAAGC TCCAGATGTT GCTGTTGTCC TAGGAATGAT 77391 .......... .......... .......... .......... .......... .......... 298 TCTGCCTTTG CTTTGTGTAG CCTTTGCAAG AGTTCTTGAA AAGTTTTTAT CAAGTTGCAA 77331 .......... .......... .......... .......... .......... .......... 298 AAACTGAAAG ACAAATGTTT AGGAAAGTGC CTTTTATATG GGCAAGTCAC TTTCCTAAAC 77271 .......... .......... .......... .......... .......... .......... 298 TTCTTTGCCA TTGGTTGGAA AGGTCACACT TTTCTGACGC CATCGAGAAG TGTGCACCTA 77211 .......... .......... .......... .......... .......... .......... 298 CTTTCTGTAC GTCTCCAATT GGCAGTTGAC TGGCTCATCA TCATGAGGGC CTGGTACCTC 77151 .......... .......... .......... .......... .......... .......... 298 TACTAGGTCC CTGAGTTTGT TTCATCTGCA ATACTTCAAA CAAGACACCT GCAATACTCA 77091 .......... .......... .......... .......... .......... .......... 298 AGTAGAAAAC CCGGTACCTT TATGAGGTCC CTAAGTTTGT CAAATTATCA AAACTACAAA 77031 .......... .......... .......... .......... .......... .......... 298 TAACAAATAT GTATGATGTT TCTATAATAG CGTGAGAAGG TGATTAAAAA TTTAGATGTT 76971 .......... .......... .......... .......... .......... .......... 298 TTAATTTGTA TTACTTTGAC TTGACATGGT AATATTCACA ATCTATTGTA AAAAAATATA 76911 .......... .......... .......... .......... .......... .......... 298 TATATTAGAG TGACGCTTTC ATAATTGTGT TTTAGTTTTT GAAGAAGAAC TCATTTATTT 76851 .......... .......... .......... .......... .......... .......... 298 GTAAAGCCCA AGTTAATGAT TCAGTCCAAA TGAAAATGAA TTTAATTCAA ATTTTGTATG 76791 .......... .......... .......... .......... .......... .......... 298 AATTTGATCT AATTACAATG TATGTGTCTA CAATATTAAC GCTACTCCCC TATCTTTATA 76731 .......... .......... .......... .......... .......... .......... 298 TATAGATGAT CCATTTGGTT CATATGTATA TGTATATAGA AATAACTATG AAGAGAGTAT 76671 ||| | |||| | ||||| ||| | || || | || || ......TGAA TCTTTTGATG CATAT-AATA TCCATTAGGA AGTAGCTC.. .......... 339 TTTCAATATT GGTGGACTCA AGTATAGTAC ACAACATTTT ATGATGACGG AACTATTTAC 76611 .......... .......... .......... .......... .......... .......... 339 TACTATTAAG AAGGGAGTGA CGATCCATGG GACTACGATA AACTATTGAG AAAGGGTGAA 76551 .......... .......... .......... .......... .......... .......... 339 TTGATCATAA TATTATGGTG GAATTAGAAT GTAAGTTGAC AATTTTATAT CCGATTATCA 76491 .......... .......... .......... .......... .......... .......... 339 GTTTATTCAT ACGTATTTTT TGAATCGGAA TCGAAGGACT ATGTGAGTTT CGTTTCCAAC 76431 .......... .......... .......... .......... .......... .......... 339 TCATTAAACT GTTCGTTTTT ATGACTTCAA AATAGAGAGA TATTCACGTT TGTGCCTCTT 76371 .......... .......... .......... .......... .......... .......... 339 CAAGAGCTTT GGACCGGCCA TAACATTCGA AATTGGAGAA AAAAATTAAG GAAACTCTTA 76311 .......... .......... .......... .......... .......... .......... 339 TTTTATCTGT AGAATAATAC TTAATTTTTT AGCCACATTT TTTTCATCAG TCTTCTGCAC 76251 |||||||||| .......... .......... .......... .......... .......... TCTTCTGCAC 349 TACTAATGAA GAAA-AGGGA TTACTTTTTG TGTGAGTTGG AGAAAGTTGA ATGAATTTAC 76192 | || || | | | |||| || | | || || | ||| || | || || AAATATATAA TATTGTTCAA ATGCTTTATG AAAGTGATGA AG-CACTTGC ATCATTTAAC 408 TATAA-AAAA AAACAAATAT CCAATTCCCA TTATTTACTT GTTAAATTAC GAGTGAACAA 76133 |||| |||| |||| | CATAAGAAAA AAACTCAA.. .......... .......... .......... .......... 426 TGAACCCAAT TGAATAATTT AACAAAATAA ATTTGAGAAA AATGTTTGAA AAACGTTTTA 76073 .......... .......... .......... .......... .......... .......... 426 ATTTTGGTCG AAATTGATGT TACGAAATCA AATTTTATAG ATGATCTTTT ACGTATTTTA 76013 .......... .......... .......... .......... .......... .......... 426 AAGGTATATA TATGTGCCCA TGTGGACACA TTAATATTTA TAATGATACA ATATTTGTGA 75953 .......... .......... .......... .......... .......... .......... 426 TGTCCATGTG AATATATATA TATATATTTA AAATACACTA TCAAATAGAA TAGGGATAAA 75893 .......... .......... .......... .......... .......... .......... 426 AAATTATTTT CAAAATTCAA TATTATGACA ATAATCTCAA TTAAAATTTG AATATATTTC 75833 .......... .......... .......... .......... .......... .......... 426 AAATTTTTTT TTTCAATAAA TTTTAAAAGT TGGATCAAAC GTGTTACTGT TAATATTAAC 75773 .......... .......... .......... .......... .......... .......... 426 AAAGAAAAGA GTTCGTCGTA ATACTACTGA ATTATTGTCC TAAAAAAATG GAGAAAAATT 75713 .......... .......... .......... .......... .......... .......... 426 ATTGTAATGC ATTAATTACG GACAGATATT AGATAATGTA GACCCACCAT TATATAAATT 75653 .......... .......... .......... .......... .......... .......... 426 GACTATGTGA ATTGAAACAA AATGTCTAAA AAGGTTGTCA AATTCCAGGT ATTTGATCTC 75593 | || | ||| .......... .......... .......... .......... ........AT ATGTTATCAA 438 ATCTTATTAT AAAAAAAACT AATAATTGTT CCAGATATTC GTGGCATAAC AAAATAATTG 75533 || || || | |||||| ||| || || | | AT-TTGTT-T AAAAAAGACT CATTTATG-T CATT...... .......... .......... 469 ATACACATGC AATGTTTTAT CTTCTAGAAA ACACTTGAAA TTATTTAATA AAATCTTCTT 75473 .......... .......... .......... .......... .......... .......... 469 AACTTGTTGA AGTGTATTGA TTAGAAGTGA TATGAAAAAG AAAAAAGAAC ATATGATAAC 75413 .......... .......... .......... .......... .......... .......... 469 ACCCATAACT CTTTTGCACC TCACCTATAT ATTTTACTAA TTTCACAATT TTATTCTTTT 75353 .......... .......... .......... .......... .......... .......... 469 AGTGTTTTTT TATTTTTATT TCTACTTGAG CAAAAAATGA TATAAGTTTC TGAAAGAAAA 75293 .......... .......... .......... .......... .......... .......... 469 AAAAATAAAA CTTTATTAAA GAGGTATTTT TTATACTATT GTTGATTAAG AAAAACTAGG 75233 .......... .......... .......... .......... .......... .......... 469 CACGAGAATC ACCGCTTAAA TATATAATTT TTAAATAAAG AGGTATTATT TGCGTATAAA 75173 .......... .......... .......... .......... .......... .......... 469 AATATTTACT TTGATATAAT TTTTAAATAT TTCTTATATT TAAGTTTGAA ACTTAGAATT 75113 .......... .......... .......... .......... .......... .......... 469 TTGGATGGTT CCATAAATAT TATAGTCCAC ATGTGTTGGT AATTATAATA AAACTCAAAT 75053 .......... .......... .......... .......... .......... .......... 469 CAAAATTAAA TTAATATTGA TGCAAAAAGG AAATCTATTT AGCATTAAGA ATGACAATAA 74993 .......... .......... .......... .......... .......... .......... 469 TATTAAATAT TTGTTCTTTG ATTTTACGTT GATTTAGACA ATTGAAATAC ATAATCTAAT 74933 .......... .......... .......... .......... .......... .......... 469 TTTAATTTTC TTTAATATTT AGTCATGTAA CTAATGCTTA TTTGTTATAA ATTCATTGAA 74873 .......... .......... .......... .......... .......... .......... 469 TGAGTGGATA GTCCATAAGG TTGGTACATG AACAACCATT CATATTCACT AGGTTACATG 74813 .......... .......... .......... .......... .......... .......... 469 AACCTTTTTG GATAAGAATG TATCTATTTA CTATGATACT TAATATGGTA ACCTTTGGAG 74753 .......... .......... .......... .......... .......... .......... 469 TGATTTCTCA CTCTATAAAT AGGGTTGTTC ATTCAGTATT GTAATAGATA CATATGAGAC 74693 .......... .......... .......... .......... .......... .......... 469 TTGAATACAC TTGAATAAGA AGAAAATTCC TCTTCTTCTA TATACTTCTC TTATCTTCTT 74633 .......... .......... .......... .......... .......... .......... 469 CTCTTTATGA TTATATTCTT ATGAGCTTGA TTTTATAACA CGTTATCAGC ACGAGTCTCT 74573 .......... .......... .......... .......... .......... .......... 469 ATCTAATTGA GAGTGGGTTC TTGTTTTTCT TTAGCTCATA TTTTGGTTGA TCTCGTTATG 74513 .......... .......... .......... .......... .......... .......... 469 AAGATCAAAG TATTATATGC ATAAAATCAG GTATGTATTT TCTAAAATAT TTTATGATTT 74453 .......... .......... .......... .......... .......... .......... 469 AGAATAAAAT AGTATTCAAT CACTAATAAT TATCAGGAAC CGAAGACATA TACTACTATT 74393 .......... .......... .......... .......... .......... .......... 469 GGTTGAATAT GACATGCTAT ACAAAACTTC TTAAATAGAA GAAGGTATAA AATTTTAATA 74333 .......... .......... .......... .......... .......... .......... 469 GCATGAATTT GAATGTTATT TTGATTGTTT TGAATGACTC AAAGGGTGAG TCATGTTGTA 74273 .......... .......... .......... .......... .......... .......... 469 CTTCGGTTTA TTATACCGTT GGTTAAGGGT AAGACGATGA ATTCAAGTTT CATCGCACCA 74213 .......... .......... .......... .......... .......... .......... 469 AAAGGGTAAG ACATCAGGTT AAAGTCCGGA TGCACCATAA TGAAAAATAT TTGAGGATAA 74153 ||| | |||||||||| |||||| ||| .......... .......... .......... .....CATTA TGAAAAATAT TTGAGGGTAA 494 GACGATAGAT TCAAGTTCTA TCGCACCAAA AGGGTAAGAC ATCAATTTGA GTTTTGATGC 74093 |||| ||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| GACGGTAGAT TCAAGTTCTA TCGCACCAAG AGGGTAAGAC ATCAATTCGA GTTTTGATGC 554 ACC 74090 ||| ACC 557 hqPGS_C09HBa0099P03.1-2-_SGN-E255405- (74177 74090) ******************************************************************************** EST sequence 26 -strand 608 n (File: SGN-E251501-) 1 TATGACGAAA TCGAGGTCAT CAATAGCTCT TTTGAAGGTT GTTCCTATAA ACACATATAT 61 ACTAATTTAC CAAAAGTGAT GTTATAAGAT GTAAGAATAT ATATGTATGT ATTTTTACCA 121 ATATTGATAT TGATGATAGC TGGTTTGTTC TTGTTGACAA GTAACTTTGA TTGTAAATCT 181 TCATAATCAA TTTCCCCATT AACTAAAGTG TTGATAGTTT GTAGCTCCAT TCGATACATT 241 CTTGCTGCTT TGAAAATCGA GTAATGTGAA TCTTTTGATG CATATAATAT CCATTAGGAA 301 GTAGCTCTCT TCTGCACAAA TATATAATAT TGTTCAAATG CTTTATGAAA GTGATGAAGC 361 ACTTGCATCA TTTAACCATA AGAAAAAAAC TCAAATATGT TATCAAATTT GTTTAAAAAA 421 GACTCATTTA TGTCATTCAT TATGAAAAAT ATTTGAGGGT AAGACGGTAG ATTCAAGTTC 481 TATCGCACCA AGAGGGTAAG ACATCAATTC GAGTTTTGAT GCACCATAAT GATAAGGTAT 541 TGGGTTCAAG TCCCATAGAA TTATGGCCTA ATGTGCCTTG TATGGATAAG ACATTGAGTT 601 TGAGTCTC Predicted gene structure (within gDNA segment 79193 to 73309): Exon 1 78530 78519 ( 12 n); cDNA 250 261 ( 12 n); score: 0.667 Intron 1 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 2 78091 78087 ( 5 n); cDNA 262 266 ( 5 n); score: 1.000 Intron 2 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 76724 76683 ( 42 n); cDNA 267 307 ( 41 n); score: 0.643 Intron 3 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 4 76260 76175 ( 86 n); cDNA 308 394 ( 87 n); score: 0.570 Intron 4 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 5 75604 75559 ( 46 n); cDNA 395 437 ( 43 n); score: 0.630 Intron 5 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 6 74177 74090 ( 88 n); cDNA 438 525 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E251501- 0.759 279 0.459 C PGS_C09HBa0099P03.1-2-_SGN-E251501- (78530 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): TTACCAATCA AGGCATCCAT GGTCAGCACC TTCAAGTCCT TGGCTTCTGT AATGGCATCA 78471 || |||| || TTGAAAATCG AG........ .......... .......... .......... .......... 261 ACTTTGCTCT CCCAGGACTT TGGAAGAATT CAAAGCACTT TCCTGACTTG TTTGGTCATG 78411 .......... .......... .......... .......... .......... .......... 261 CTTATAGGTT CACCCAAACT TCGTAGCTCT TTTGTAATGG AAGACAACTT GGTGAACATG 78351 .......... .......... .......... .......... .......... .......... 261 TCATGTATAG TTTCTCCTTC CTTCATTTTG AAGTTCTCAT ATCGTGAGGT GAGCATGTCA 78291 .......... .......... .......... .......... .......... .......... 261 ATCTTGGATT CTTTGACTTG TTCAGTTCCT TCATGTGCAG TCAACAAGCA ATCCCAAATT 78231 .......... .......... .......... .......... .......... .......... 261 TCTTTAGCAG ACTCACAGGC TGACACTCTG TTGTACTCAT CAGGTCCTAT CCCACAGACC 78171 .......... .......... .......... .......... .......... .......... 261 AGAAGAGTTT TAGCTTTGAA ACCCTTTTCA ATCTTTTTCC TGTCAGCATC ATCATATTTC 78111 .......... .......... .......... .......... .......... .......... 261 TGCCTGGGCT TTGGAACAGT AATGGTCTTT TCTCCATCCT TTACTTCCAT CATTGGAACA 78051 | |||| .......... .........T AATG...... .......... .......... .......... 266 AAGGGTCCAT CTAGTATAAT ATCCCATAAC TCGCTATCTT CAGCCATGAG ATAGTCGTGC 77991 .......... .......... .......... .......... .......... .......... 266 ATTCTAACTT TCCACCAACT GTAGAAATGT CCATTGAAAC GAGGAGGTCT GTGTGATGAC 77931 .......... .......... .......... .......... .......... .......... 266 TGACCTTCTT CGAGGTTAAG TGGAGCTGCT ATTCTTAGAA CAAAATCACT TCCTTGGTGT 77871 .......... .......... .......... .......... .......... .......... 266 TAACCAAATA GGTAGTGCCT GCTCTGATAC CACTTGATAG AATTTATGCC TTCACTTATT 77811 .......... .......... .......... .......... .......... .......... 266 AGTAATGGAC CAGGTCTCTT ACTTTACTTC AGAAAATTAC CAGAAAGTTA AATGCAGTAA 77751 .......... .......... .......... .......... .......... .......... 266 AATTAACACA ATGATTTTAC GTGGAAACCT CCTTGCTTAA GGGAGTAAAA CCACGACCTA 77691 .......... .......... .......... .......... .......... .......... 266 TCTCACAGGA TTTTCAATCG TTTTCACTAA TCTTCAAAAG CAAAAGCGAA ACACGATTAC 77631 .......... .......... .......... .......... .......... .......... 266 ACCAAACGTA AGAAAGAGTT ATCAATCTTA CCGTTAAGCA ATAGACCTCT ATTGCTCAAC 77571 .......... .......... .......... .......... .......... .......... 266 AAGCCAAAGT AGAAAAACAA TCTACCCACT AAGCTATCCC ACCTGGACAA CCTAGACTTT 77511 .......... .......... .......... .......... .......... .......... 266 TAACACAACA CACCAATTCC TTTATAGATT TAGGAGTGGT TTACAATTTA AGAACAAGAG 77451 .......... .......... .......... .......... .......... .......... 266 AATAAATTCC TAAACAACTA GACGAAAAGC TCCAGATGTT GCTGTTGTCC TAGGAATGAT 77391 .......... .......... .......... .......... .......... .......... 266 TCTGCCTTTG CTTTGTGTAG CCTTTGCAAG AGTTCTTGAA AAGTTTTTAT CAAGTTGCAA 77331 .......... .......... .......... .......... .......... .......... 266 AAACTGAAAG ACAAATGTTT AGGAAAGTGC CTTTTATATG GGCAAGTCAC TTTCCTAAAC 77271 .......... .......... .......... .......... .......... .......... 266 TTCTTTGCCA TTGGTTGGAA AGGTCACACT TTTCTGACGC CATCGAGAAG TGTGCACCTA 77211 .......... .......... .......... .......... .......... .......... 266 CTTTCTGTAC GTCTCCAATT GGCAGTTGAC TGGCTCATCA TCATGAGGGC CTGGTACCTC 77151 .......... .......... .......... .......... .......... .......... 266 TACTAGGTCC CTGAGTTTGT TTCATCTGCA ATACTTCAAA CAAGACACCT GCAATACTCA 77091 .......... .......... .......... .......... .......... .......... 266 AGTAGAAAAC CCGGTACCTT TATGAGGTCC CTAAGTTTGT CAAATTATCA AAACTACAAA 77031 .......... .......... .......... .......... .......... .......... 266 TAACAAATAT GTATGATGTT TCTATAATAG CGTGAGAAGG TGATTAAAAA TTTAGATGTT 76971 .......... .......... .......... .......... .......... .......... 266 TTAATTTGTA TTACTTTGAC TTGACATGGT AATATTCACA ATCTATTGTA AAAAAATATA 76911 .......... .......... .......... .......... .......... .......... 266 TATATTAGAG TGACGCTTTC ATAATTGTGT TTTAGTTTTT GAAGAAGAAC TCATTTATTT 76851 .......... .......... .......... .......... .......... .......... 266 GTAAAGCCCA AGTTAATGAT TCAGTCCAAA TGAAAATGAA TTTAATTCAA ATTTTGTATG 76791 .......... .......... .......... .......... .......... .......... 266 AATTTGATCT AATTACAATG TATGTGTCTA CAATATTAAC GCTACTCCCC TATCTTTATA 76731 .......... .......... .......... .......... .......... .......... 266 TATAGATGAT CCATTTGGTT CATATGTATA TGTATATAGA AATAACTATG AAGAGAGTAT 76671 ||| | |||| | ||||| ||| | || || | || || ......TGAA TCTTTTGATG CATAT-AATA TCCATTAGGA AGTAGCTC.. .......... 307 TTTCAATATT GGTGGACTCA AGTATAGTAC ACAACATTTT ATGATGACGG AACTATTTAC 76611 .......... .......... .......... .......... .......... .......... 307 TACTATTAAG AAGGGAGTGA CGATCCATGG GACTACGATA AACTATTGAG AAAGGGTGAA 76551 .......... .......... .......... .......... .......... .......... 307 TTGATCATAA TATTATGGTG GAATTAGAAT GTAAGTTGAC AATTTTATAT CCGATTATCA 76491 .......... .......... .......... .......... .......... .......... 307 GTTTATTCAT ACGTATTTTT TGAATCGGAA TCGAAGGACT ATGTGAGTTT CGTTTCCAAC 76431 .......... .......... .......... .......... .......... .......... 307 TCATTAAACT GTTCGTTTTT ATGACTTCAA AATAGAGAGA TATTCACGTT TGTGCCTCTT 76371 .......... .......... .......... .......... .......... .......... 307 CAAGAGCTTT GGACCGGCCA TAACATTCGA AATTGGAGAA AAAAATTAAG GAAACTCTTA 76311 .......... .......... .......... .......... .......... .......... 307 TTTTATCTGT AGAATAATAC TTAATTTTTT AGCCACATTT TTTTCATCAG TCTTCTGCAC 76251 |||||||||| .......... .......... .......... .......... .......... TCTTCTGCAC 317 TACTA-ATGA AGAAAAGGGA TTACTTTTTG TGTGAGTTGG AGAAAGTTGA ATGAATTTAC 76192 | || || | | | |||| || | | || || | ||| || | || || AAATATATAA TATTGTTCAA ATGCTTTATG AAAGTGATGA AG-CACTTGC ATCATTTAAC 376 TATAA-AAAA AAACAAATAT CCAATTCCCA TTATTTACTT GTTAAATTAC GAGTGAACAA 76133 |||| |||| |||| | CATAAGAAAA AAACTCAA.. .......... .......... .......... .......... 394 TGAACCCAAT TGAATAATTT AACAAAATAA ATTTGAGAAA AATGTTTGAA AAACGTTTTA 76073 .......... .......... .......... .......... .......... .......... 394 ATTTTGGTCG AAATTGATGT TACGAAATCA AATTTTATAG ATGATCTTTT ACGTATTTTA 76013 .......... .......... .......... .......... .......... .......... 394 AAGGTATATA TATGTGCCCA TGTGGACACA TTAATATTTA TAATGATACA ATATTTGTGA 75953 .......... .......... .......... .......... .......... .......... 394 TGTCCATGTG AATATATATA TATATATTTA AAATACACTA TCAAATAGAA TAGGGATAAA 75893 .......... .......... .......... .......... .......... .......... 394 AAATTATTTT CAAAATTCAA TATTATGACA ATAATCTCAA TTAAAATTTG AATATATTTC 75833 .......... .......... .......... .......... .......... .......... 394 AAATTTTTTT TTTCAATAAA TTTTAAAAGT TGGATCAAAC GTGTTACTGT TAATATTAAC 75773 .......... .......... .......... .......... .......... .......... 394 AAAGAAAAGA GTTCGTCGTA ATACTACTGA ATTATTGTCC TAAAAAAATG GAGAAAAATT 75713 .......... .......... .......... .......... .......... .......... 394 ATTGTAATGC ATTAATTACG GACAGATATT AGATAATGTA GACCCACCAT TATATAAATT 75653 .......... .......... .......... .......... .......... .......... 394 GACTATGTGA ATTGAAACAA AATGTCTAAA AAGGTTGTCA AATTCCAGGT ATTTGATCTC 75593 | || | ||| .......... .......... .......... .......... ........AT ATGTTATCAA 406 ATCTTATTAT AAAAAAAACT AATAATTGTT CCAGATATTC GTGGCATAAC AAAATAATTG 75533 || || || | |||||| ||| || || | | AT-TTGTT-T AAAAAAGACT CATTTATG-T CATT...... .......... .......... 437 ATACACATGC AATGTTTTAT CTTCTAGAAA ACACTTGAAA TTATTTAATA AAATCTTCTT 75473 .......... .......... .......... .......... .......... .......... 437 AACTTGTTGA AGTGTATTGA TTAGAAGTGA TATGAAAAAG AAAAAAGAAC ATATGATAAC 75413 .......... .......... .......... .......... .......... .......... 437 ACCCATAACT CTTTTGCACC TCACCTATAT ATTTTACTAA TTTCACAATT TTATTCTTTT 75353 .......... .......... .......... .......... .......... .......... 437 AGTGTTTTTT TATTTTTATT TCTACTTGAG CAAAAAATGA TATAAGTTTC TGAAAGAAAA 75293 .......... .......... .......... .......... .......... .......... 437 AAAAATAAAA CTTTATTAAA GAGGTATTTT TTATACTATT GTTGATTAAG AAAAACTAGG 75233 .......... .......... .......... .......... .......... .......... 437 CACGAGAATC ACCGCTTAAA TATATAATTT TTAAATAAAG AGGTATTATT TGCGTATAAA 75173 .......... .......... .......... .......... .......... .......... 437 AATATTTACT TTGATATAAT TTTTAAATAT TTCTTATATT TAAGTTTGAA ACTTAGAATT 75113 .......... .......... .......... .......... .......... .......... 437 TTGGATGGTT CCATAAATAT TATAGTCCAC ATGTGTTGGT AATTATAATA AAACTCAAAT 75053 .......... .......... .......... .......... .......... .......... 437 CAAAATTAAA TTAATATTGA TGCAAAAAGG AAATCTATTT AGCATTAAGA ATGACAATAA 74993 .......... .......... .......... .......... .......... .......... 437 TATTAAATAT TTGTTCTTTG ATTTTACGTT GATTTAGACA ATTGAAATAC ATAATCTAAT 74933 .......... .......... .......... .......... .......... .......... 437 TTTAATTTTC TTTAATATTT AGTCATGTAA CTAATGCTTA TTTGTTATAA ATTCATTGAA 74873 .......... .......... .......... .......... .......... .......... 437 TGAGTGGATA GTCCATAAGG TTGGTACATG AACAACCATT CATATTCACT AGGTTACATG 74813 .......... .......... .......... .......... .......... .......... 437 AACCTTTTTG GATAAGAATG TATCTATTTA CTATGATACT TAATATGGTA ACCTTTGGAG 74753 .......... .......... .......... .......... .......... .......... 437 TGATTTCTCA CTCTATAAAT AGGGTTGTTC ATTCAGTATT GTAATAGATA CATATGAGAC 74693 .......... .......... .......... .......... .......... .......... 437 TTGAATACAC TTGAATAAGA AGAAAATTCC TCTTCTTCTA TATACTTCTC TTATCTTCTT 74633 .......... .......... .......... .......... .......... .......... 437 CTCTTTATGA TTATATTCTT ATGAGCTTGA TTTTATAACA CGTTATCAGC ACGAGTCTCT 74573 .......... .......... .......... .......... .......... .......... 437 ATCTAATTGA GAGTGGGTTC TTGTTTTTCT TTAGCTCATA TTTTGGTTGA TCTCGTTATG 74513 .......... .......... .......... .......... .......... .......... 437 AAGATCAAAG TATTATATGC ATAAAATCAG GTATGTATTT TCTAAAATAT TTTATGATTT 74453 .......... .......... .......... .......... .......... .......... 437 AGAATAAAAT AGTATTCAAT CACTAATAAT TATCAGGAAC CGAAGACATA TACTACTATT 74393 .......... .......... .......... .......... .......... .......... 437 GGTTGAATAT GACATGCTAT ACAAAACTTC TTAAATAGAA GAAGGTATAA AATTTTAATA 74333 .......... .......... .......... .......... .......... .......... 437 GCATGAATTT GAATGTTATT TTGATTGTTT TGAATGACTC AAAGGGTGAG TCATGTTGTA 74273 .......... .......... .......... .......... .......... .......... 437 CTTCGGTTTA TTATACCGTT GGTTAAGGGT AAGACGATGA ATTCAAGTTT CATCGCACCA 74213 .......... .......... .......... .......... .......... .......... 437 AAAGGGTAAG ACATCAGGTT AAAGTCCGGA TGCACCATAA TGAAAAATAT TTGAGGATAA 74153 ||| | |||||||||| |||||| ||| .......... .......... .......... .....CATTA TGAAAAATAT TTGAGGGTAA 462 GACGATAGAT TCAAGTTCTA TCGCACCAAA AGGGTAAGAC ATCAATTTGA GTTTTGATGC 74093 |||| ||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| GACGGTAGAT TCAAGTTCTA TCGCACCAAG AGGGTAAGAC ATCAATTCGA GTTTTGATGC 522 ACC 74090 ||| ACC 525 hqPGS_C09HBa0099P03.1-2-_SGN-E251501- (74177 74090) ******************************************************************************** EST sequence 32 -strand 584 n (File: SGN-E256408-) 1 TATAATAATT GTCATTTGAA TAACCACAAT TTTCAAGTGT TTGTATGACG AAATCGAGGT 61 CATCAATAGC TCCTTTGAAG GTTGTTCCAA TATTGATATT GATGATAGCT GGTTTGTTCT 121 TGTTGACAAG TAACTTTGAT TGTAAATCTT CATAATCAAT TTCCCCATTA ACTAAAGTGT 181 TGATAGTTTG TAGCTCCATT CGATACATTC TTGCTGCTTT GAAAATCGAG TAATGTGAAT 241 CTTTTGATGC ATATAATATC CATTAGGAAG TAGCTCTCTT CTGCACAAAT ATATAATATT 301 GTTCAAATGC TTTATGAAAG TGATGAAGCA CTTGCATCAT TTAACCATAA GAAAAAAACT 361 CAAATATGTT ATCAAATTTG TTTAAAAAAG ACTCATTTAT GTCATTCATT ATGAAAAATA 421 TTTGAGGGTA AGACGGTAGA TTCAAGTTCT ATCGCACCAA GAGGGTAAGA CATCAATTCG 481 AGTTTTGATG CACCATAATG ATAAGGTATT GGGTTCAAGT CCCATAGAAT TATGGCCTAA 541 TGTGCCTTGT ATGGATAAGA CATTGAGTTT GAGTCTCCAT GCAC Predicted gene structure (within gDNA segment 79483 to 73239): Exon 1 78530 78519 ( 12 n); cDNA 219 230 ( 12 n); score: 0.667 Intron 1 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 2 78091 78087 ( 5 n); cDNA 231 235 ( 5 n); score: 1.000 Intron 2 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 76724 76683 ( 42 n); cDNA 236 276 ( 41 n); score: 0.643 Intron 3 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 4 76260 76175 ( 86 n); cDNA 277 363 ( 87 n); score: 0.570 Intron 4 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 5 75604 75559 ( 46 n); cDNA 364 406 ( 43 n); score: 0.630 Intron 5 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 6 74177 74090 ( 88 n); cDNA 407 494 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E256408- 0.759 279 0.478 C PGS_C09HBa0099P03.1-2-_SGN-E256408- (78530 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): TTACCAATCA AGGCATCCAT GGTCAGCACC TTCAAGTCCT TGGCTTCTGT AATGGCATCA 78471 || |||| || TTGAAAATCG AG........ .......... .......... .......... .......... 230 ACTTTGCTCT CCCAGGACTT TGGAAGAATT CAAAGCACTT TCCTGACTTG TTTGGTCATG 78411 .......... .......... .......... .......... .......... .......... 230 CTTATAGGTT CACCCAAACT TCGTAGCTCT TTTGTAATGG AAGACAACTT GGTGAACATG 78351 .......... .......... .......... .......... .......... .......... 230 TCATGTATAG TTTCTCCTTC CTTCATTTTG AAGTTCTCAT ATCGTGAGGT GAGCATGTCA 78291 .......... .......... .......... .......... .......... .......... 230 ATCTTGGATT CTTTGACTTG TTCAGTTCCT TCATGTGCAG TCAACAAGCA ATCCCAAATT 78231 .......... .......... .......... .......... .......... .......... 230 TCTTTAGCAG ACTCACAGGC TGACACTCTG TTGTACTCAT CAGGTCCTAT CCCACAGACC 78171 .......... .......... .......... .......... .......... .......... 230 AGAAGAGTTT TAGCTTTGAA ACCCTTTTCA ATCTTTTTCC TGTCAGCATC ATCATATTTC 78111 .......... .......... .......... .......... .......... .......... 230 TGCCTGGGCT TTGGAACAGT AATGGTCTTT TCTCCATCCT TTACTTCCAT CATTGGAACA 78051 | |||| .......... .........T AATG...... .......... .......... .......... 235 AAGGGTCCAT CTAGTATAAT ATCCCATAAC TCGCTATCTT CAGCCATGAG ATAGTCGTGC 77991 .......... .......... .......... .......... .......... .......... 235 ATTCTAACTT TCCACCAACT GTAGAAATGT CCATTGAAAC GAGGAGGTCT GTGTGATGAC 77931 .......... .......... .......... .......... .......... .......... 235 TGACCTTCTT CGAGGTTAAG TGGAGCTGCT ATTCTTAGAA CAAAATCACT TCCTTGGTGT 77871 .......... .......... .......... .......... .......... .......... 235 TAACCAAATA GGTAGTGCCT GCTCTGATAC CACTTGATAG AATTTATGCC TTCACTTATT 77811 .......... .......... .......... .......... .......... .......... 235 AGTAATGGAC CAGGTCTCTT ACTTTACTTC AGAAAATTAC CAGAAAGTTA AATGCAGTAA 77751 .......... .......... .......... .......... .......... .......... 235 AATTAACACA ATGATTTTAC GTGGAAACCT CCTTGCTTAA GGGAGTAAAA CCACGACCTA 77691 .......... .......... .......... .......... .......... .......... 235 TCTCACAGGA TTTTCAATCG TTTTCACTAA TCTTCAAAAG CAAAAGCGAA ACACGATTAC 77631 .......... .......... .......... .......... .......... .......... 235 ACCAAACGTA AGAAAGAGTT ATCAATCTTA CCGTTAAGCA ATAGACCTCT ATTGCTCAAC 77571 .......... .......... .......... .......... .......... .......... 235 AAGCCAAAGT AGAAAAACAA TCTACCCACT AAGCTATCCC ACCTGGACAA CCTAGACTTT 77511 .......... .......... .......... .......... .......... .......... 235 TAACACAACA CACCAATTCC TTTATAGATT TAGGAGTGGT TTACAATTTA AGAACAAGAG 77451 .......... .......... .......... .......... .......... .......... 235 AATAAATTCC TAAACAACTA GACGAAAAGC TCCAGATGTT GCTGTTGTCC TAGGAATGAT 77391 .......... .......... .......... .......... .......... .......... 235 TCTGCCTTTG CTTTGTGTAG CCTTTGCAAG AGTTCTTGAA AAGTTTTTAT CAAGTTGCAA 77331 .......... .......... .......... .......... .......... .......... 235 AAACTGAAAG ACAAATGTTT AGGAAAGTGC CTTTTATATG GGCAAGTCAC TTTCCTAAAC 77271 .......... .......... .......... .......... .......... .......... 235 TTCTTTGCCA TTGGTTGGAA AGGTCACACT TTTCTGACGC CATCGAGAAG TGTGCACCTA 77211 .......... .......... .......... .......... .......... .......... 235 CTTTCTGTAC GTCTCCAATT GGCAGTTGAC TGGCTCATCA TCATGAGGGC CTGGTACCTC 77151 .......... .......... .......... .......... .......... .......... 235 TACTAGGTCC CTGAGTTTGT TTCATCTGCA ATACTTCAAA CAAGACACCT GCAATACTCA 77091 .......... .......... .......... .......... .......... .......... 235 AGTAGAAAAC CCGGTACCTT TATGAGGTCC CTAAGTTTGT CAAATTATCA AAACTACAAA 77031 .......... .......... .......... .......... .......... .......... 235 TAACAAATAT GTATGATGTT TCTATAATAG CGTGAGAAGG TGATTAAAAA TTTAGATGTT 76971 .......... .......... .......... .......... .......... .......... 235 TTAATTTGTA TTACTTTGAC TTGACATGGT AATATTCACA ATCTATTGTA AAAAAATATA 76911 .......... .......... .......... .......... .......... .......... 235 TATATTAGAG TGACGCTTTC ATAATTGTGT TTTAGTTTTT GAAGAAGAAC TCATTTATTT 76851 .......... .......... .......... .......... .......... .......... 235 GTAAAGCCCA AGTTAATGAT TCAGTCCAAA TGAAAATGAA TTTAATTCAA ATTTTGTATG 76791 .......... .......... .......... .......... .......... .......... 235 AATTTGATCT AATTACAATG TATGTGTCTA CAATATTAAC GCTACTCCCC TATCTTTATA 76731 .......... .......... .......... .......... .......... .......... 235 TATAGATGAT CCATTTGGTT CATATGTATA TGTATATAGA AATAACTATG AAGAGAGTAT 76671 ||| | |||| | ||||| ||| | || || | || || ......TGAA TCTTTTGATG CATAT-AATA TCCATTAGGA AGTAGCTC.. .......... 276 TTTCAATATT GGTGGACTCA AGTATAGTAC ACAACATTTT ATGATGACGG AACTATTTAC 76611 .......... .......... .......... .......... .......... .......... 276 TACTATTAAG AAGGGAGTGA CGATCCATGG GACTACGATA AACTATTGAG AAAGGGTGAA 76551 .......... .......... .......... .......... .......... .......... 276 TTGATCATAA TATTATGGTG GAATTAGAAT GTAAGTTGAC AATTTTATAT CCGATTATCA 76491 .......... .......... .......... .......... .......... .......... 276 GTTTATTCAT ACGTATTTTT TGAATCGGAA TCGAAGGACT ATGTGAGTTT CGTTTCCAAC 76431 .......... .......... .......... .......... .......... .......... 276 TCATTAAACT GTTCGTTTTT ATGACTTCAA AATAGAGAGA TATTCACGTT TGTGCCTCTT 76371 .......... .......... .......... .......... .......... .......... 276 CAAGAGCTTT GGACCGGCCA TAACATTCGA AATTGGAGAA AAAAATTAAG GAAACTCTTA 76311 .......... .......... .......... .......... .......... .......... 276 TTTTATCTGT AGAATAATAC TTAATTTTTT AGCCACATTT TTTTCATCAG TCTTCTGCAC 76251 |||||||||| .......... .......... .......... .......... .......... TCTTCTGCAC 286 TACTAATGAA GAAA-AGGGA TTACTTTTTG TGTGAGTTGG AGAAAGTTGA ATGAATTTAC 76192 | || || | | | |||| || | | || || | ||| || | || || AAATATATAA TATTGTTCAA ATGCTTTATG AAAGTGATGA AG-CACTTGC ATCATTTAAC 345 TATAA-AAAA AAACAAATAT CCAATTCCCA TTATTTACTT GTTAAATTAC GAGTGAACAA 76133 |||| |||| |||| | CATAAGAAAA AAACTCAA.. .......... .......... .......... .......... 363 TGAACCCAAT TGAATAATTT AACAAAATAA ATTTGAGAAA AATGTTTGAA AAACGTTTTA 76073 .......... .......... .......... .......... .......... .......... 363 ATTTTGGTCG AAATTGATGT TACGAAATCA AATTTTATAG ATGATCTTTT ACGTATTTTA 76013 .......... .......... .......... .......... .......... .......... 363 AAGGTATATA TATGTGCCCA TGTGGACACA TTAATATTTA TAATGATACA ATATTTGTGA 75953 .......... .......... .......... .......... .......... .......... 363 TGTCCATGTG AATATATATA TATATATTTA AAATACACTA TCAAATAGAA TAGGGATAAA 75893 .......... .......... .......... .......... .......... .......... 363 AAATTATTTT CAAAATTCAA TATTATGACA ATAATCTCAA TTAAAATTTG AATATATTTC 75833 .......... .......... .......... .......... .......... .......... 363 AAATTTTTTT TTTCAATAAA TTTTAAAAGT TGGATCAAAC GTGTTACTGT TAATATTAAC 75773 .......... .......... .......... .......... .......... .......... 363 AAAGAAAAGA GTTCGTCGTA ATACTACTGA ATTATTGTCC TAAAAAAATG GAGAAAAATT 75713 .......... .......... .......... .......... .......... .......... 363 ATTGTAATGC ATTAATTACG GACAGATATT AGATAATGTA GACCCACCAT TATATAAATT 75653 .......... .......... .......... .......... .......... .......... 363 GACTATGTGA ATTGAAACAA AATGTCTAAA AAGGTTGTCA AATTCCAGGT ATTTGATCTC 75593 | || | ||| .......... .......... .......... .......... ........AT ATGTTATCAA 375 ATCTTATTAT AAAAAAAACT AATAATTGTT CCAGATATTC GTGGCATAAC AAAATAATTG 75533 || || || | |||||| ||| || || | | AT-TTGTT-T AAAAAAGACT CATTTATG-T CATT...... .......... .......... 406 ATACACATGC AATGTTTTAT CTTCTAGAAA ACACTTGAAA TTATTTAATA AAATCTTCTT 75473 .......... .......... .......... .......... .......... .......... 406 AACTTGTTGA AGTGTATTGA TTAGAAGTGA TATGAAAAAG AAAAAAGAAC ATATGATAAC 75413 .......... .......... .......... .......... .......... .......... 406 ACCCATAACT CTTTTGCACC TCACCTATAT ATTTTACTAA TTTCACAATT TTATTCTTTT 75353 .......... .......... .......... .......... .......... .......... 406 AGTGTTTTTT TATTTTTATT TCTACTTGAG CAAAAAATGA TATAAGTTTC TGAAAGAAAA 75293 .......... .......... .......... .......... .......... .......... 406 AAAAATAAAA CTTTATTAAA GAGGTATTTT TTATACTATT GTTGATTAAG AAAAACTAGG 75233 .......... .......... .......... .......... .......... .......... 406 CACGAGAATC ACCGCTTAAA TATATAATTT TTAAATAAAG AGGTATTATT TGCGTATAAA 75173 .......... .......... .......... .......... .......... .......... 406 AATATTTACT TTGATATAAT TTTTAAATAT TTCTTATATT TAAGTTTGAA ACTTAGAATT 75113 .......... .......... .......... .......... .......... .......... 406 TTGGATGGTT CCATAAATAT TATAGTCCAC ATGTGTTGGT AATTATAATA AAACTCAAAT 75053 .......... .......... .......... .......... .......... .......... 406 CAAAATTAAA TTAATATTGA TGCAAAAAGG AAATCTATTT AGCATTAAGA ATGACAATAA 74993 .......... .......... .......... .......... .......... .......... 406 TATTAAATAT TTGTTCTTTG ATTTTACGTT GATTTAGACA ATTGAAATAC ATAATCTAAT 74933 .......... .......... .......... .......... .......... .......... 406 TTTAATTTTC TTTAATATTT AGTCATGTAA CTAATGCTTA TTTGTTATAA ATTCATTGAA 74873 .......... .......... .......... .......... .......... .......... 406 TGAGTGGATA GTCCATAAGG TTGGTACATG AACAACCATT CATATTCACT AGGTTACATG 74813 .......... .......... .......... .......... .......... .......... 406 AACCTTTTTG GATAAGAATG TATCTATTTA CTATGATACT TAATATGGTA ACCTTTGGAG 74753 .......... .......... .......... .......... .......... .......... 406 TGATTTCTCA CTCTATAAAT AGGGTTGTTC ATTCAGTATT GTAATAGATA CATATGAGAC 74693 .......... .......... .......... .......... .......... .......... 406 TTGAATACAC TTGAATAAGA AGAAAATTCC TCTTCTTCTA TATACTTCTC TTATCTTCTT 74633 .......... .......... .......... .......... .......... .......... 406 CTCTTTATGA TTATATTCTT ATGAGCTTGA TTTTATAACA CGTTATCAGC ACGAGTCTCT 74573 .......... .......... .......... .......... .......... .......... 406 ATCTAATTGA GAGTGGGTTC TTGTTTTTCT TTAGCTCATA TTTTGGTTGA TCTCGTTATG 74513 .......... .......... .......... .......... .......... .......... 406 AAGATCAAAG TATTATATGC ATAAAATCAG GTATGTATTT TCTAAAATAT TTTATGATTT 74453 .......... .......... .......... .......... .......... .......... 406 AGAATAAAAT AGTATTCAAT CACTAATAAT TATCAGGAAC CGAAGACATA TACTACTATT 74393 .......... .......... .......... .......... .......... .......... 406 GGTTGAATAT GACATGCTAT ACAAAACTTC TTAAATAGAA GAAGGTATAA AATTTTAATA 74333 .......... .......... .......... .......... .......... .......... 406 GCATGAATTT GAATGTTATT TTGATTGTTT TGAATGACTC AAAGGGTGAG TCATGTTGTA 74273 .......... .......... .......... .......... .......... .......... 406 CTTCGGTTTA TTATACCGTT GGTTAAGGGT AAGACGATGA ATTCAAGTTT CATCGCACCA 74213 .......... .......... .......... .......... .......... .......... 406 AAAGGGTAAG ACATCAGGTT AAAGTCCGGA TGCACCATAA TGAAAAATAT TTGAGGATAA 74153 ||| | |||||||||| |||||| ||| .......... .......... .......... .....CATTA TGAAAAATAT TTGAGGGTAA 431 GACGATAGAT TCAAGTTCTA TCGCACCAAA AGGGTAAGAC ATCAATTTGA GTTTTGATGC 74093 |||| ||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| GACGGTAGAT TCAAGTTCTA TCGCACCAAG AGGGTAAGAC ATCAATTCGA GTTTTGATGC 491 ACC 74090 ||| ACC 494 hqPGS_C09HBa0099P03.1-2-_SGN-E256408- (74177 74090) ******************************************************************************** EST sequence 55 -strand 605 n (File: SGN-E259955-) 1 ATAATGCTGC ATCGCAATGG ATATAATAAT TGTCATTTGA ATAACCACAA TTTTCAAGTG 61 TTTGTATGAC GAAATCGAGG TCATCAATAG CTCCTTTGAA GGTTGTTCCA ATATTGATAT 121 TGATGATAGC TGGTTTGTTC TTGTTGACAA GTAACTTTGA TTGTAAATCT TCATAATCAA 181 TTTCCCCATT AACTAAAGTG TTGATAGTTT GTAGCTCCAT TCGATACATT CTTGCTGCTT 241 TGAAAATCGA GTAATGTGAA TCTTTTGATG CATATAATAT CCATTAGGAA GTAGCTCTCT 301 TCTGCACAAA TATATAATAT TGTTCAAATG CTTTATGAAA GTGATGAAGC ACTTGCATCA 361 TTTAACCATA AGAAAAAAAC TCAAATATGT TATCAAATTT GTTTAAAAAA GACTCATTTA 421 TGTCATTCAT TATGAAAAAT ATTTGAGGGT AAGACGGTAG ATTCAAGTTC TATCGCACCA 481 AGAGGGTAAG ACATCAATTC GAGTTTTGAT GCACCATAAT GATAAGGTAT TGGGTTCAAG 541 TCCCATAGAA TTATGGCCTA ATGTGCCTTG TATGGATAAG ACATTGAGTT TGAGTCTCCA 601 TGCAC Predicted gene structure (within gDNA segment 79693 to 73239): Exon 1 78530 78519 ( 12 n); cDNA 240 251 ( 12 n); score: 0.667 Intron 1 78518 78092 ( 427 n); Pd: 0.380 (s: 0), Pa: 0.094 (s: 0) Exon 2 78091 78087 ( 5 n); cDNA 252 256 ( 5 n); score: 1.000 Intron 2 78086 76725 (1362 n); Pd: 0.535 (s: 0), Pa: 0.000 (s: 0.64) Exon 3 76724 76683 ( 42 n); cDNA 257 297 ( 41 n); score: 0.643 Intron 3 76682 76261 ( 422 n); Pd: 0.000 (s: 0.64), Pa: 0.051 (s: 0.52) Exon 4 76260 76175 ( 86 n); cDNA 298 384 ( 87 n); score: 0.570 Intron 4 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 5 75604 75559 ( 46 n); cDNA 385 427 ( 43 n); score: 0.630 Intron 5 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 6 74177 74090 ( 88 n); cDNA 428 515 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E259955- 0.759 279 0.461 C PGS_C09HBa0099P03.1-2-_SGN-E259955- (78530 78519,78091 78087,76724 76683,76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): TTACCAATCA AGGCATCCAT GGTCAGCACC TTCAAGTCCT TGGCTTCTGT AATGGCATCA 78471 || |||| || TTGAAAATCG AG........ .......... .......... .......... .......... 251 ACTTTGCTCT CCCAGGACTT TGGAAGAATT CAAAGCACTT TCCTGACTTG TTTGGTCATG 78411 .......... .......... .......... .......... .......... .......... 251 CTTATAGGTT CACCCAAACT TCGTAGCTCT TTTGTAATGG AAGACAACTT GGTGAACATG 78351 .......... .......... .......... .......... .......... .......... 251 TCATGTATAG TTTCTCCTTC CTTCATTTTG AAGTTCTCAT ATCGTGAGGT GAGCATGTCA 78291 .......... .......... .......... .......... .......... .......... 251 ATCTTGGATT CTTTGACTTG TTCAGTTCCT TCATGTGCAG TCAACAAGCA ATCCCAAATT 78231 .......... .......... .......... .......... .......... .......... 251 TCTTTAGCAG ACTCACAGGC TGACACTCTG TTGTACTCAT CAGGTCCTAT CCCACAGACC 78171 .......... .......... .......... .......... .......... .......... 251 AGAAGAGTTT TAGCTTTGAA ACCCTTTTCA ATCTTTTTCC TGTCAGCATC ATCATATTTC 78111 .......... .......... .......... .......... .......... .......... 251 TGCCTGGGCT TTGGAACAGT AATGGTCTTT TCTCCATCCT TTACTTCCAT CATTGGAACA 78051 | |||| .......... .........T AATG...... .......... .......... .......... 256 AAGGGTCCAT CTAGTATAAT ATCCCATAAC TCGCTATCTT CAGCCATGAG ATAGTCGTGC 77991 .......... .......... .......... .......... .......... .......... 256 ATTCTAACTT TCCACCAACT GTAGAAATGT CCATTGAAAC GAGGAGGTCT GTGTGATGAC 77931 .......... .......... .......... .......... .......... .......... 256 TGACCTTCTT CGAGGTTAAG TGGAGCTGCT ATTCTTAGAA CAAAATCACT TCCTTGGTGT 77871 .......... .......... .......... .......... .......... .......... 256 TAACCAAATA GGTAGTGCCT GCTCTGATAC CACTTGATAG AATTTATGCC TTCACTTATT 77811 .......... .......... .......... .......... .......... .......... 256 AGTAATGGAC CAGGTCTCTT ACTTTACTTC AGAAAATTAC CAGAAAGTTA AATGCAGTAA 77751 .......... .......... .......... .......... .......... .......... 256 AATTAACACA ATGATTTTAC GTGGAAACCT CCTTGCTTAA GGGAGTAAAA CCACGACCTA 77691 .......... .......... .......... .......... .......... .......... 256 TCTCACAGGA TTTTCAATCG TTTTCACTAA TCTTCAAAAG CAAAAGCGAA ACACGATTAC 77631 .......... .......... .......... .......... .......... .......... 256 ACCAAACGTA AGAAAGAGTT ATCAATCTTA CCGTTAAGCA ATAGACCTCT ATTGCTCAAC 77571 .......... .......... .......... .......... .......... .......... 256 AAGCCAAAGT AGAAAAACAA TCTACCCACT AAGCTATCCC ACCTGGACAA CCTAGACTTT 77511 .......... .......... .......... .......... .......... .......... 256 TAACACAACA CACCAATTCC TTTATAGATT TAGGAGTGGT TTACAATTTA AGAACAAGAG 77451 .......... .......... .......... .......... .......... .......... 256 AATAAATTCC TAAACAACTA GACGAAAAGC TCCAGATGTT GCTGTTGTCC TAGGAATGAT 77391 .......... .......... .......... .......... .......... .......... 256 TCTGCCTTTG CTTTGTGTAG CCTTTGCAAG AGTTCTTGAA AAGTTTTTAT CAAGTTGCAA 77331 .......... .......... .......... .......... .......... .......... 256 AAACTGAAAG ACAAATGTTT AGGAAAGTGC CTTTTATATG GGCAAGTCAC TTTCCTAAAC 77271 .......... .......... .......... .......... .......... .......... 256 TTCTTTGCCA TTGGTTGGAA AGGTCACACT TTTCTGACGC CATCGAGAAG TGTGCACCTA 77211 .......... .......... .......... .......... .......... .......... 256 CTTTCTGTAC GTCTCCAATT GGCAGTTGAC TGGCTCATCA TCATGAGGGC CTGGTACCTC 77151 .......... .......... .......... .......... .......... .......... 256 TACTAGGTCC CTGAGTTTGT TTCATCTGCA ATACTTCAAA CAAGACACCT GCAATACTCA 77091 .......... .......... .......... .......... .......... .......... 256 AGTAGAAAAC CCGGTACCTT TATGAGGTCC CTAAGTTTGT CAAATTATCA AAACTACAAA 77031 .......... .......... .......... .......... .......... .......... 256 TAACAAATAT GTATGATGTT TCTATAATAG CGTGAGAAGG TGATTAAAAA TTTAGATGTT 76971 .......... .......... .......... .......... .......... .......... 256 TTAATTTGTA TTACTTTGAC TTGACATGGT AATATTCACA ATCTATTGTA AAAAAATATA 76911 .......... .......... .......... .......... .......... .......... 256 TATATTAGAG TGACGCTTTC ATAATTGTGT TTTAGTTTTT GAAGAAGAAC TCATTTATTT 76851 .......... .......... .......... .......... .......... .......... 256 GTAAAGCCCA AGTTAATGAT TCAGTCCAAA TGAAAATGAA TTTAATTCAA ATTTTGTATG 76791 .......... .......... .......... .......... .......... .......... 256 AATTTGATCT AATTACAATG TATGTGTCTA CAATATTAAC GCTACTCCCC TATCTTTATA 76731 .......... .......... .......... .......... .......... .......... 256 TATAGATGAT CCATTTGGTT CATATGTATA TGTATATAGA AATAACTATG AAGAGAGTAT 76671 ||| | |||| | ||||| ||| | || || | || || ......TGAA TCTTTTGATG CATAT-AATA TCCATTAGGA AGTAGCTC.. .......... 297 TTTCAATATT GGTGGACTCA AGTATAGTAC ACAACATTTT ATGATGACGG AACTATTTAC 76611 .......... .......... .......... .......... .......... .......... 297 TACTATTAAG AAGGGAGTGA CGATCCATGG GACTACGATA AACTATTGAG AAAGGGTGAA 76551 .......... .......... .......... .......... .......... .......... 297 TTGATCATAA TATTATGGTG GAATTAGAAT GTAAGTTGAC AATTTTATAT CCGATTATCA 76491 .......... .......... .......... .......... .......... .......... 297 GTTTATTCAT ACGTATTTTT TGAATCGGAA TCGAAGGACT ATGTGAGTTT CGTTTCCAAC 76431 .......... .......... .......... .......... .......... .......... 297 TCATTAAACT GTTCGTTTTT ATGACTTCAA AATAGAGAGA TATTCACGTT TGTGCCTCTT 76371 .......... .......... .......... .......... .......... .......... 297 CAAGAGCTTT GGACCGGCCA TAACATTCGA AATTGGAGAA AAAAATTAAG GAAACTCTTA 76311 .......... .......... .......... .......... .......... .......... 297 TTTTATCTGT AGAATAATAC TTAATTTTTT AGCCACATTT TTTTCATCAG TCTTCTGCAC 76251 |||||||||| .......... .......... .......... .......... .......... TCTTCTGCAC 307 TACTAATGAA GAAA-AGGGA TTACTTTTTG TGTGAGTTGG AGAAAGTTGA ATGAATTTAC 76192 | || || | | | |||| || | | || || | ||| || | || || AAATATATAA TATTGTTCAA ATGCTTTATG AAAGTGATGA AG-CACTTGC ATCATTTAAC 366 TATAA-AAAA AAACAAATAT CCAATTCCCA TTATTTACTT GTTAAATTAC GAGTGAACAA 76133 |||| |||| |||| | CATAAGAAAA AAACTCAA.. .......... .......... .......... .......... 384 TGAACCCAAT TGAATAATTT AACAAAATAA ATTTGAGAAA AATGTTTGAA AAACGTTTTA 76073 .......... .......... .......... .......... .......... .......... 384 ATTTTGGTCG AAATTGATGT TACGAAATCA AATTTTATAG ATGATCTTTT ACGTATTTTA 76013 .......... .......... .......... .......... .......... .......... 384 AAGGTATATA TATGTGCCCA TGTGGACACA TTAATATTTA TAATGATACA ATATTTGTGA 75953 .......... .......... .......... .......... .......... .......... 384 TGTCCATGTG AATATATATA TATATATTTA AAATACACTA TCAAATAGAA TAGGGATAAA 75893 .......... .......... .......... .......... .......... .......... 384 AAATTATTTT CAAAATTCAA TATTATGACA ATAATCTCAA TTAAAATTTG AATATATTTC 75833 .......... .......... .......... .......... .......... .......... 384 AAATTTTTTT TTTCAATAAA TTTTAAAAGT TGGATCAAAC GTGTTACTGT TAATATTAAC 75773 .......... .......... .......... .......... .......... .......... 384 AAAGAAAAGA GTTCGTCGTA ATACTACTGA ATTATTGTCC TAAAAAAATG GAGAAAAATT 75713 .......... .......... .......... .......... .......... .......... 384 ATTGTAATGC ATTAATTACG GACAGATATT AGATAATGTA GACCCACCAT TATATAAATT 75653 .......... .......... .......... .......... .......... .......... 384 GACTATGTGA ATTGAAACAA AATGTCTAAA AAGGTTGTCA AATTCCAGGT ATTTGATCTC 75593 | || | ||| .......... .......... .......... .......... ........AT ATGTTATCAA 396 ATCTTATTAT AAAAAAAACT AATAATTGTT CCAGATATTC GTGGCATAAC AAAATAATTG 75533 || || || | |||||| ||| || || | | AT-TTGTT-T AAAAAAGACT CATTTATG-T CATT...... .......... .......... 427 ATACACATGC AATGTTTTAT CTTCTAGAAA ACACTTGAAA TTATTTAATA AAATCTTCTT 75473 .......... .......... .......... .......... .......... .......... 427 AACTTGTTGA AGTGTATTGA TTAGAAGTGA TATGAAAAAG AAAAAAGAAC ATATGATAAC 75413 .......... .......... .......... .......... .......... .......... 427 ACCCATAACT CTTTTGCACC TCACCTATAT ATTTTACTAA TTTCACAATT TTATTCTTTT 75353 .......... .......... .......... .......... .......... .......... 427 AGTGTTTTTT TATTTTTATT TCTACTTGAG CAAAAAATGA TATAAGTTTC TGAAAGAAAA 75293 .......... .......... .......... .......... .......... .......... 427 AAAAATAAAA CTTTATTAAA GAGGTATTTT TTATACTATT GTTGATTAAG AAAAACTAGG 75233 .......... .......... .......... .......... .......... .......... 427 CACGAGAATC ACCGCTTAAA TATATAATTT TTAAATAAAG AGGTATTATT TGCGTATAAA 75173 .......... .......... .......... .......... .......... .......... 427 AATATTTACT TTGATATAAT TTTTAAATAT TTCTTATATT TAAGTTTGAA ACTTAGAATT 75113 .......... .......... .......... .......... .......... .......... 427 TTGGATGGTT CCATAAATAT TATAGTCCAC ATGTGTTGGT AATTATAATA AAACTCAAAT 75053 .......... .......... .......... .......... .......... .......... 427 CAAAATTAAA TTAATATTGA TGCAAAAAGG AAATCTATTT AGCATTAAGA ATGACAATAA 74993 .......... .......... .......... .......... .......... .......... 427 TATTAAATAT TTGTTCTTTG ATTTTACGTT GATTTAGACA ATTGAAATAC ATAATCTAAT 74933 .......... .......... .......... .......... .......... .......... 427 TTTAATTTTC TTTAATATTT AGTCATGTAA CTAATGCTTA TTTGTTATAA ATTCATTGAA 74873 .......... .......... .......... .......... .......... .......... 427 TGAGTGGATA GTCCATAAGG TTGGTACATG AACAACCATT CATATTCACT AGGTTACATG 74813 .......... .......... .......... .......... .......... .......... 427 AACCTTTTTG GATAAGAATG TATCTATTTA CTATGATACT TAATATGGTA ACCTTTGGAG 74753 .......... .......... .......... .......... .......... .......... 427 TGATTTCTCA CTCTATAAAT AGGGTTGTTC ATTCAGTATT GTAATAGATA CATATGAGAC 74693 .......... .......... .......... .......... .......... .......... 427 TTGAATACAC TTGAATAAGA AGAAAATTCC TCTTCTTCTA TATACTTCTC TTATCTTCTT 74633 .......... .......... .......... .......... .......... .......... 427 CTCTTTATGA TTATATTCTT ATGAGCTTGA TTTTATAACA CGTTATCAGC ACGAGTCTCT 74573 .......... .......... .......... .......... .......... .......... 427 ATCTAATTGA GAGTGGGTTC TTGTTTTTCT TTAGCTCATA TTTTGGTTGA TCTCGTTATG 74513 .......... .......... .......... .......... .......... .......... 427 AAGATCAAAG TATTATATGC ATAAAATCAG GTATGTATTT TCTAAAATAT TTTATGATTT 74453 .......... .......... .......... .......... .......... .......... 427 AGAATAAAAT AGTATTCAAT CACTAATAAT TATCAGGAAC CGAAGACATA TACTACTATT 74393 .......... .......... .......... .......... .......... .......... 427 GGTTGAATAT GACATGCTAT ACAAAACTTC TTAAATAGAA GAAGGTATAA AATTTTAATA 74333 .......... .......... .......... .......... .......... .......... 427 GCATGAATTT GAATGTTATT TTGATTGTTT TGAATGACTC AAAGGGTGAG TCATGTTGTA 74273 .......... .......... .......... .......... .......... .......... 427 CTTCGGTTTA TTATACCGTT GGTTAAGGGT AAGACGATGA ATTCAAGTTT CATCGCACCA 74213 .......... .......... .......... .......... .......... .......... 427 AAAGGGTAAG ACATCAGGTT AAAGTCCGGA TGCACCATAA TGAAAAATAT TTGAGGATAA 74153 ||| | |||||||||| |||||| ||| .......... .......... .......... .....CATTA TGAAAAATAT TTGAGGGTAA 452 GACGATAGAT TCAAGTTCTA TCGCACCAAA AGGGTAAGAC ATCAATTTGA GTTTTGATGC 74093 |||| ||||| |||||||||| ||||||||| |||||||||| ||||||| || |||||||||| GACGGTAGAT TCAAGTTCTA TCGCACCAAG AGGGTAAGAC ATCAATTCGA GTTTTGATGC 512 ACC 74090 ||| ACC 515 hqPGS_C09HBa0099P03.1-2-_SGN-E259955- (74177 74090) ******************************************************************************** EST sequence 52 -strand 458 n (File: SGN-E250041-) 1 CATCAATAGC TCCTTTGAAG GTTGTTCCAA TATTGATATT GATGATAGCT GGTTTGTTCT 61 TGTTGACAAG TAACTTTGAT TGTAAATCTT CATAATCAAT TTCCCCATTA ACTAAAGTGT 121 TGATAGTTTG TAGCTCCATT CGATACATTC TTGCTGCTTT GAAAATCGAG TAATGTGAAT 181 CTTTTGATGC ATATAATATC CATTAGGAAG TAGCTCTCTT CTGCACAAAT ATATAATATT 241 GTTCAAATGC TTTATGAAAG TGATGAAGCA CTTGCATCAT TTAACCATAA GAAAAAAACT 301 CAAATATGTT ATCAAATTTG TTTAAAAAAG ACTCATTTAT GTCATTCATT ATGAAAAATA 361 TTTGAGGGTA AGACGGTAGA TTCAAGTTCT ATCGCACCAA CAGGGTAAGA CATCAATTCG 421 AGTTTTGATG CACCATAATG ATAAGGTATT GGGTTCAA Predicted gene structure (within gDNA segment 78283 to 73106): Exon 1 76260 76175 ( 86 n); cDNA 217 303 ( 87 n); score: 0.570 Intron 1 76174 75605 ( 570 n); Pd: 0.000 (s: 0.60), Pa: 0.646 (s: 0.63) Exon 2 75604 75559 ( 46 n); cDNA 304 346 ( 43 n); score: 0.630 Intron 2 75558 74178 (1381 n); Pd: 0.000 (s: 0.63), Pa: 0.000 (s: 0.94) Exon 3 74177 74090 ( 88 n); cDNA 347 434 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E250041- 0.759 220 0.480 C PGS_C09HBa0099P03.1-2-_SGN-E250041- (76260 76175,75604 75559,74177 74090) Alignment (genomic DNA sequence = upper lines): TCTTCTGCAC TACTA-ATGA AGAAAAGGGA TTACTTTTTG TGTGAGTTGG AGAAAGTTGA 76202 |||||||||| | || || | | | |||| || | | || || | ||| TCTTCTGCAC AAATATATAA TATTGTTCAA ATGCTTTATG AAAGTGATGA AGC-ACTTGC 275 ATGAATTTAC TATAA-AAAA AAACAAATAT CCAATTCCCA TTATTTACTT GTTAAATTAC 76143 || | || || |||| |||| |||| | ATCATTTAAC CATAAGAAAA AAACTCAA.. .......... .......... .......... 303 GAGTGAACAA TGAACCCAAT TGAATAATTT AACAAAATAA ATTTGAGAAA AATGTTTGAA 76083 .......... .......... .......... .......... .......... .......... 303 AAACGTTTTA ATTTTGGTCG AAATTGATGT TACGAAATCA AATTTTATAG ATGATCTTTT 76023 .......... .......... .......... .......... .......... .......... 303 ACGTATTTTA AAGGTATATA TATGTGCCCA TGTGGACACA TTAATATTTA TAATGATACA 75963 .......... .......... .......... .......... .......... .......... 303 ATATTTGTGA TGTCCATGTG AATATATATA TATATATTTA AAATACACTA TCAAATAGAA 75903 .......... .......... .......... .......... .......... .......... 303 TAGGGATAAA AAATTATTTT CAAAATTCAA TATTATGACA ATAATCTCAA TTAAAATTTG 75843 .......... .......... .......... .......... .......... .......... 303 AATATATTTC AAATTTTTTT TTTCAATAAA TTTTAAAAGT TGGATCAAAC GTGTTACTGT 75783 .......... .......... .......... .......... .......... .......... 303 TAATATTAAC AAAGAAAAGA GTTCGTCGTA ATACTACTGA ATTATTGTCC TAAAAAAATG 75723 .......... .......... .......... .......... .......... .......... 303 GAGAAAAATT ATTGTAATGC ATTAATTACG GACAGATATT AGATAATGTA GACCCACCAT 75663 .......... .......... .......... .......... .......... .......... 303 TATATAAATT GACTATGTGA ATTGAAACAA AATGTCTAAA AAGGTTGTCA AATTCCAGGT 75603 | .......... .......... .......... .......... .......... ........AT 305 ATTTGATCTC ATCTTATTAT AAAAAAAACT AATAATTGTT CCAGATATTC GTGGCATAAC 75543 || | ||| || || || | |||||| ||| || || | | ATGTTATCAA AT-TTGTT-T AAAAAAGACT CATTTATG-T CATT...... .......... 346 AAAATAATTG ATACACATGC AATGTTTTAT CTTCTAGAAA ACACTTGAAA TTATTTAATA 75483 .......... .......... .......... .......... .......... .......... 346 AAATCTTCTT AACTTGTTGA AGTGTATTGA TTAGAAGTGA TATGAAAAAG AAAAAAGAAC 75423 .......... .......... .......... .......... .......... .......... 346 ATATGATAAC ACCCATAACT CTTTTGCACC TCACCTATAT ATTTTACTAA TTTCACAATT 75363 .......... .......... .......... .......... .......... .......... 346 TTATTCTTTT AGTGTTTTTT TATTTTTATT TCTACTTGAG CAAAAAATGA TATAAGTTTC 75303 .......... .......... .......... .......... .......... .......... 346 TGAAAGAAAA AAAAATAAAA CTTTATTAAA GAGGTATTTT TTATACTATT GTTGATTAAG 75243 .......... .......... .......... .......... .......... .......... 346 AAAAACTAGG CACGAGAATC ACCGCTTAAA TATATAATTT TTAAATAAAG AGGTATTATT 75183 .......... .......... .......... .......... .......... .......... 346 TGCGTATAAA AATATTTACT TTGATATAAT TTTTAAATAT TTCTTATATT TAAGTTTGAA 75123 .......... .......... .......... .......... .......... .......... 346 ACTTAGAATT TTGGATGGTT CCATAAATAT TATAGTCCAC ATGTGTTGGT AATTATAATA 75063 .......... .......... .......... .......... .......... .......... 346 AAACTCAAAT CAAAATTAAA TTAATATTGA TGCAAAAAGG AAATCTATTT AGCATTAAGA 75003 .......... .......... .......... .......... .......... .......... 346 ATGACAATAA TATTAAATAT TTGTTCTTTG ATTTTACGTT GATTTAGACA ATTGAAATAC 74943 .......... .......... .......... .......... .......... .......... 346 ATAATCTAAT TTTAATTTTC TTTAATATTT AGTCATGTAA CTAATGCTTA TTTGTTATAA 74883 .......... .......... .......... .......... .......... .......... 346 ATTCATTGAA TGAGTGGATA GTCCATAAGG TTGGTACATG AACAACCATT CATATTCACT 74823 .......... .......... .......... .......... .......... .......... 346 AGGTTACATG AACCTTTTTG GATAAGAATG TATCTATTTA CTATGATACT TAATATGGTA 74763 .......... .......... .......... .......... .......... .......... 346 ACCTTTGGAG TGATTTCTCA CTCTATAAAT AGGGTTGTTC ATTCAGTATT GTAATAGATA 74703 .......... .......... .......... .......... .......... .......... 346 CATATGAGAC TTGAATACAC TTGAATAAGA AGAAAATTCC TCTTCTTCTA TATACTTCTC 74643 .......... .......... .......... .......... .......... .......... 346 TTATCTTCTT CTCTTTATGA TTATATTCTT ATGAGCTTGA TTTTATAACA CGTTATCAGC 74583 .......... .......... .......... .......... .......... .......... 346 ACGAGTCTCT ATCTAATTGA GAGTGGGTTC TTGTTTTTCT TTAGCTCATA TTTTGGTTGA 74523 .......... .......... .......... .......... .......... .......... 346 TCTCGTTATG AAGATCAAAG TATTATATGC ATAAAATCAG GTATGTATTT TCTAAAATAT 74463 .......... .......... .......... .......... .......... .......... 346 TTTATGATTT AGAATAAAAT AGTATTCAAT CACTAATAAT TATCAGGAAC CGAAGACATA 74403 .......... .......... .......... .......... .......... .......... 346 TACTACTATT GGTTGAATAT GACATGCTAT ACAAAACTTC TTAAATAGAA GAAGGTATAA 74343 .......... .......... .......... .......... .......... .......... 346 AATTTTAATA GCATGAATTT GAATGTTATT TTGATTGTTT TGAATGACTC AAAGGGTGAG 74283 .......... .......... .......... .......... .......... .......... 346 TCATGTTGTA CTTCGGTTTA TTATACCGTT GGTTAAGGGT AAGACGATGA ATTCAAGTTT 74223 .......... .......... .......... .......... .......... .......... 346 CATCGCACCA AAAGGGTAAG ACATCAGGTT AAAGTCCGGA TGCACCATAA TGAAAAATAT 74163 ||| | |||||||||| .......... .......... .......... .......... .....CATTA TGAAAAATAT 361 TTGAGGATAA GACGATAGAT TCAAGTTCTA TCGCACCAAA AGGGTAAGAC ATCAATTTGA 74103 |||||| ||| |||| ||||| |||||||||| ||||||||| |||||||||| ||||||| || TTGAGGGTAA GACGGTAGAT TCAAGTTCTA TCGCACCAAC AGGGTAAGAC ATCAATTCGA 421 GTTTTGATGC ACC 74090 |||||||||| ||| GTTTTGATGC ACC 434 hqPGS_C09HBa0099P03.1-2-_SGN-E250041- (74177 74090) ******************************************************************************** EST sequence 14 -strand 281 n (File: SGN-E261191-) 1 TCAAATGCTT TATGAAAGTG ATGAAGCACT TGCATCATTT AACCATAAGA AAAAAACTCA 61 AATATGTTAT CAAATTTGTT AAAAAAGACT CATTTATGTC ATTCATTATG AAAAATATTT 121 GAGGGTAAGA CGGTAGATTC AAGTTCTATC GCACCAAGAG GGTAAGACAT CAATTCGAGT 181 TTTGATGCAC CATAATGATA AGGTATTGGG TTCAAGTCCC ATAGAATTAT GGCCTAATGT 241 GCCTTGTATG GATAAGACAT TGAGTTTGAG TCTCCATGCA C Predicted gene structure (within gDNA segment 75853 to 73239): Exon 1 74177 74090 ( 88 n); cDNA 104 191 ( 88 n); score: 0.943 MATCH C09HBa0099P03.1-2- SGN-E261191- 0.943 88 0.313 C PGS_C09HBa0099P03.1-2-_SGN-E261191- (74177 74090) Alignment (genomic DNA sequence = upper lines): CATAATGAAA AATATTTGAG GATAAGACGA TAGATTCAAG TTCTATCGCA CCAAAAGGGT 74118 ||| |||||| |||||||||| | ||||||| |||||||||| |||||||||| |||| ||||| CATTATGAAA AATATTTGAG GGTAAGACGG TAGATTCAAG TTCTATCGCA CCAAGAGGGT 163 AAGACATCAA TTTGAGTTTT GATGCACC 74090 |||||||||| || ||||||| |||||||| AAGACATCAA TTCGAGTTTT GATGCACC 191 hqPGS_C09HBa0099P03.1-2-_SGN-E261191- (74177 74090) ******************************************************************************** EST sequence 73 +strand 421 n (File: SGN-E338242+) 1 TAATATTTTC TTTCTTTTAG AATTTTAGTA AGTTCTTTTA TAACACGTTA TCAGCACGAG 61 TCTCTAGCTA ATTGAGAGTG AGTTTTAGTT TTTTCTTTAA CTCATGTTTT GGTTGATCTC 121 GATATGAGAA TCAAGGTATT ATTTGCATAA GATCAGGTAT GTATTTTCTA AAATATTTTA 181 TGATTTAGAA TAAAATAGTA TTCAGTCACT AGCAATTATC AGGAACCGAA GACATATACT 241 ACTATTGGTT GAATATGACA TGCTATATAA AACTTATTAA ATGGAAGAAG GTATAAAATT 301 TTAATAGCAT GAGTTTGAAT GTTATTTTGA TTGTTTTGAA AGACTCAAAG GGTGAGTCGT 361 GTTGTACTTC GGTCTATTAT ACCGTTGGTC AAGGGTAAGA CGATTGATTC AAGTTTCATC 421 G Predicted gene structure (within gDNA segment 75552 to 73041): Exon 1 74602 74218 ( 385 n); cDNA 36 421 ( 386 n); score: 0.929 MATCH C09HBa0099P03.1-2- SGN-E338242+ 0.929 385 0.914 C PGS_C09HBa0099P03.1-2-_SGN-E338242+ (74602 74218) Alignment (genomic DNA sequence = upper lines): TTTTATAACA CGTTATCAGC ACGAGTCTCT ATCTAATTGA GAGTGGGTTC TTG-TTTTTC 74544 |||||||||| |||||||||| |||||||||| | |||||||| ||||| ||| | | |||||| TTTTATAACA CGTTATCAGC ACGAGTCTCT AGCTAATTGA GAGTGAGTTT TAGTTTTTTC 95 TTTAGCTCAT ATTTTGGTTG ATCTCGTTAT GAAGATCAAA GTATTATATG CATAAAATCA 74484 |||| ||||| ||||||||| |||||| ||| || ||||| ||||||| || ||||| |||| TTTAACTCAT GTTTTGGTTG ATCTCGATAT GAGAATCAAG GTATTATTTG CATAAGATCA 155 GGTATGTATT TTCTAAAATA TTTTATGATT TAGAATAAAA TAGTATTCAA TCACTAATAA 74424 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| || GGTATGTATT TTCTAAAATA TTTTATGATT TAGAATAAAA TAGTATTCAG TCACTAGCAA 215 TTATCAGGAA CCGAAGACAT ATACTACTAT TGGTTGAATA TGACATGCTA TACAAAACTT 74364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TTATCAGGAA CCGAAGACAT ATACTACTAT TGGTTGAATA TGACATGCTA TATAAAACTT 275 CTTAAATAGA AGAAGGTATA AAATTTTAAT AGCATGAATT TGAATGTTAT TTTGATTGTT 74304 |||||| || |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATTAAATGGA AGAAGGTATA AAATTTTAAT AGCATGAGTT TGAATGTTAT TTTGATTGTT 335 TTGAATGACT CAAAGGGTGA GTCATGTTGT ACTTCGGTTT ATTATACCGT TGGTTAAGGG 74244 ||||| |||| |||||||||| ||| |||||| |||||||| | |||||||||| |||| ||||| TTGAAAGACT CAAAGGGTGA GTCGTGTTGT ACTTCGGTCT ATTATACCGT TGGTCAAGGG 395 TAAGACGATG AATTCAAGTT TCATCG 74218 ||||||||| ||||||||| |||||| TAAGACGATT GATTCAAGTT TCATCG 421 hqPGS_C09HBa0099P03.1-2-_SGN-E338242+ (74602 74218) ******************************************************************************** EST sequence 90 +strand 390 n (File: SGN-E548779+) 1 CTAGTCTCGA GTTTTTTTTT TTTTTTTAGA ATTTTAGTAA GTTCTTTTAT AACACGTTAT 61 CAGCACGAGT CTCTAGCTAA TTGAGAGTGA GTTTTAGTTT TTTCTTTAAC TCATGTTTTG 121 GTTGATCTCG ATATGAGAAT CAAGGTATTA TTTGCATAAG ATCAGGTATG TATTTTCTAA 181 AATATTTTAT GATTTAGAAT AAAATAGTAT TCAGTCACTA GCAATTATCA GGAACCGAAG 241 ACATATACTA CTATTGGTTG AATATGACAT GCTATATAAA ACTTATTAAA TGGAAGAAGG 301 TATAAAATTT TAATAGCATG AGTTTGAATG TTATTTTGAT TGTTTTGAAA GACTCAGAGG 361 GTGAGTCGTG TTGTACTTCG GTCTATTATA Predicted gene structure (within gDNA segment 75642 to 73279): Exon 1 74602 74258 ( 345 n); cDNA 45 390 ( 346 n); score: 0.926 PPA cDNA 27 11 MATCH C09HBa0099P03.1-2- SGN-E548779+ 0.926 345 0.885 C PGS_C09HBa0099P03.1-2-_SGN-E548779+ (74602 74258) Alignment (genomic DNA sequence = upper lines): TTTTATAACA CGTTATCAGC ACGAGTCTCT ATCTAATTGA GAGTGGGTTC TTG-TTTTTC 74544 |||||||||| |||||||||| |||||||||| | |||||||| ||||| ||| | | |||||| TTTTATAACA CGTTATCAGC ACGAGTCTCT AGCTAATTGA GAGTGAGTTT TAGTTTTTTC 104 TTTAGCTCAT ATTTTGGTTG ATCTCGTTAT GAAGATCAAA GTATTATATG CATAAAATCA 74484 |||| ||||| ||||||||| |||||| ||| || ||||| ||||||| || ||||| |||| TTTAACTCAT GTTTTGGTTG ATCTCGATAT GAGAATCAAG GTATTATTTG CATAAGATCA 164 GGTATGTATT TTCTAAAATA TTTTATGATT TAGAATAAAA TAGTATTCAA TCACTAATAA 74424 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||| || GGTATGTATT TTCTAAAATA TTTTATGATT TAGAATAAAA TAGTATTCAG TCACTAGCAA 224 TTATCAGGAA CCGAAGACAT ATACTACTAT TGGTTGAATA TGACATGCTA TACAAAACTT 74364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TTATCAGGAA CCGAAGACAT ATACTACTAT TGGTTGAATA TGACATGCTA TATAAAACTT 284 CTTAAATAGA AGAAGGTATA AAATTTTAAT AGCATGAATT TGAATGTTAT TTTGATTGTT 74304 |||||| || |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATTAAATGGA AGAAGGTATA AAATTTTAAT AGCATGAGTT TGAATGTTAT TTTGATTGTT 344 TTGAATGACT CAAAGGGTGA GTCATGTTGT ACTTCGGTTT ATTATA 74258 ||||| |||| || ||||||| ||| |||||| |||||||| | |||||| TTGAAAGACT CAGAGGGTGA GTCGTGTTGT ACTTCGGTCT ATTATA 390 hqPGS_C09HBa0099P03.1-2-_SGN-E548779+ (74602 74258) ******************************************************************************** EST sequence 105 +strand 360 n (File: SGN-E301830+) 1 TAGTCTCGAG TTTTTTTTTT TTTTTTAGAA TTTTAGTAAG TTCTTTTATA ACCACCGTTA 61 TCAGCACCGA GTCTCTAGCC TAATTGAGAG TGAGTTTTAG TTTTTTCTTT AACCTCCATG 121 TTTTGGTTGA TCCTCGATAT GAGAATCAAG GTATTATTTG CATAAGATCA GGTATGTATT 181 TTCTAAAATA TTTTATGATT TAGAATAAAA TAGTATTCAG TCACCTAGCC ATTATCAGGA 241 ACCCCAAGAC ATATACCTAC TATTGGTTGA ATATGACATG CTATATAAAA CTTATTAAAT 301 GGAAGAAGGT GTAAAATTTT AATAGCCTGA GTTTGAATGT TATTTTGATT GTTTTGAAAG Predicted gene structure (within gDNA segment 76747 to 72415): Exon 1 74591 74299 ( 293 n); cDNA 57 358 ( 302 n); score: 0.845 PPA cDNA 26 10 MATCH C09HBa0099P03.1-2- SGN-E301830+ 0.845 293 0.814 C PGS_C09HBa0099P03.1-2-_SGN-E301830+ (74591 74299) Alignment (genomic DNA sequence = upper lines): GTTATCAGCA -CGAGTCTCT A-TCTAATTG AGAGTGGGTT CTTG-TTTTT CTTT-AGCT- 74537 |||||||||| ||||||||| | ||||||| |||||| ||| | | ||||| |||| | || GTTATCAGCA CCGAGTCTCT AGCCTAATTG AGAGTGAGTT TTAGTTTTTT CTTTAACCTC 116 CATATTTTGG TTGAT-CTCG TTATGAAGAT CAAAGTATTA TATGCATAAA ATCAGGTATG 74478 ||| |||||| ||||| |||| ||||| || ||| |||||| | ||||||| |||||||||| CATGTTTTGG TTGATCCTCG ATATGAGAAT CAAGGTATTA TTTGCATAAG ATCAGGTATG 176 TATTTTCTAA AATATTTTAT GATTTAGAAT AAAATAGTAT TCAATCA-CT AATAATTATC 74419 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| || | |||||| TATTTTCTAA AATATTTTAT GATTTAGAAT AAAATAGTAT TCAGTCACCT AGCCATTATC 236 AGGAA-CCGA AGACATATA- CTACTATTGG TTGAATATGA CATGCTATAC AAAACTTCTT 74361 ||||| || | ||||||||| |||||||||| |||||||||| ||||||||| ||||||| || AGGAACCCCA AGACATATAC CTACTATTGG TTGAATATGA CATGCTATAT AAAACTTATT 296 AAATAGAAGA AGGTATAAAA TTTTAATAGC ATGAATTTGA ATGTTATTTT GATTGTTTTG 74301 |||| ||||| |||| ||||| |||||||||| ||| ||||| |||||||||| |||||||||| AAATGGAAGA AGGTGTAAAA TTTTAATAGC CTGAGTTTGA ATGTTATTTT GATTGTTTTG 356 AA 74299 || AA 358 hqPGS_C09HBa0099P03.1-2-_SGN-E301830+ (74591 74299) ******************************************************************************** EST sequence 94 +strand 805 n (File: SGN-E320586+) 1 TTCTAATCAT TTCATATATA TTCAACTTTT CTTCTACTTA AGTATTTCGA ATTAATAGCG 61 TCGATTCAAA ATTATAGGTA AGGCATTCTA AATAATATTG AGTTTCCAAA TAATATATAT 121 ATATATAAAC TTTTGAACAA AAGCTATATA TTCACTTGAA CCCGACGATA GGCTAGAGCT 181 TAAATTCATT ATTGGGAGGA AATAGATATC ATCTTAATCT ATATTATTCT AAGCCCTTGA 241 CCTATATATA CGAGATTCTA TATTTTTCTT ATAGTCCACA TTAGGATCGT ACAAAATCGA 301 ACCTGAAATT AAATCAAAAC TCCGATTGAG TCAGATTGGA AAAAGAATCC GACTAGTGTT 361 TGGTTTGACT TGGTTTGATG TTGAAAAAAG AACCCGATTA TATTTGGGTT GGGTTGGTTT 421 TAACTTTAAA AGAAATAACC CGAGATCAAA CCAACCCGAC ATTATATATA ATTTTAAAAT 481 TTTATATTAT ACATAAAATA TTTACTTTGA TATAATTTTT AAATAGTTCT TATATTTTTC 541 ATCTTTTAAT ATATTATTTC AAGTTTGAAA TATAGTCCAC AAATGTTGGT AATTATAATA 601 AAGTTTAAAT CACAATCAAA TTAATAATAA AGCAAAAAGA AAATCAATTC AACACTAATA 661 ATGACAATAA TCTTAAATGT TTGTTCTTTA GCTTTACATT GGTCTAGACA ATTAAAATAG 721 ANCATTAATA CATACTCTAA TTTTAATTTT CTTTAATATT TAGTCATGGT ACTGATACTT 781 ATAAAACTTA TTTAGCATTA TTTAG Predicted gene structure (within gDNA segment 80423 to 73926): Exon 1 75913 75863 ( 51 n); cDNA 445 493 ( 49 n); score: 0.686 Intron 1 75862 75176 ( 687 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.88) Exon 2 75175 74938 ( 238 n); cDNA 494 725 ( 232 n); score: 0.775 MATCH C09HBa0099P03.1-2- SGN-E320586+ 0.760 289 0.359 C PGS_C09HBa0099P03.1-2-_SGN-E320586+ (75913 75863,75175 74938) Alignment (genomic DNA sequence = upper lines): ATCAAATAGA ATAGGGATAA AAAATTATTT TCAAAATTCA ATATTATGAC AATAATCTCA 75854 |||||| | | || | | || |||| | |||||| ||||||| || | ATCAAACCAA CCCGACATTA TATATAATTT T-AAAATTTT ATATTAT-AC A......... 493 ATTAAAATTT GAATATATTT CAAATTTTTT TTTTCAATAA ATTTTAAAAG TTGGATCAAA 75794 .......... .......... .......... .......... .......... .......... 493 CGTGTTACTG TTAATATTAA CAAAGAAAAG AGTTCGTCGT AATACTACTG AATTATTGTC 75734 .......... .......... .......... .......... .......... .......... 493 CTAAAAAAAT GGAGAAAAAT TATTGTAATG CATTAATTAC GGACAGATAT TAGATAATGT 75674 .......... .......... .......... .......... .......... .......... 493 AGACCCACCA TTATATAAAT TGACTATGTG AATTGAAACA AAATGTCTAA AAAGGTTGTC 75614 .......... .......... .......... .......... .......... .......... 493 AAATTCCAGG TATTTGATCT CATCTTATTA TAAAAAAAAC TAATAATTGT TCCAGATATT 75554 .......... .......... .......... .......... .......... .......... 493 CGTGGCATAA CAAAATAATT GATACACATG CAATGTTTTA TCTTCTAGAA AACACTTGAA 75494 .......... .......... .......... .......... .......... .......... 493 ATTATTTAAT AAAATCTTCT TAACTTGTTG AAGTGTATTG ATTAGAAGTG ATATGAAAAA 75434 .......... .......... .......... .......... .......... .......... 493 GAAAAAAGAA CATATGATAA CACCCATAAC TCTTTTGCAC CTCACCTATA TATTTTACTA 75374 .......... .......... .......... .......... .......... .......... 493 ATTTCACAAT TTTATTCTTT TAGTGTTTTT TTATTTTTAT TTCTACTTGA GCAAAAAATG 75314 .......... .......... .......... .......... .......... .......... 493 ATATAAGTTT CTGAAAGAAA AAAAAATAAA ACTTTATTAA AGAGGTATTT TTTATACTAT 75254 .......... .......... .......... .......... .......... .......... 493 TGTTGATTAA GAAAAACTAG GCACGAGAAT CACCGCTTAA ATATATAATT TTTAAATAAA 75194 .......... .......... .......... .......... .......... .......... 493 GAGGTATTAT TTGCGTATAA AAATATTTAC TTTGATATAA TTTTTAAATA TTTCTTATAT 75134 | |||||||||| |||||||||| |||||||||| |||||||| .......... ........TA AAATATTTAC TTTGATATAA TTTTTAAATA GTTCTTATA- 534 TTAAGTTTGA AACTTAGAAT TTTGGATGGT TCCA-TAAAT ATTATAGTCC ACATGTGTTG 75075 || ||| | ||| ||| | || | || | | | |||||||| ||| ||||| TT---TTT-C ATCTTTTAAT ATATTAT--T TCAAGTTTGA AATATAGTCC ACAAATGTTG 588 GTAATTATAA TAAAACTCAA ATCAAAATTA AATTAATATT GATGCAAAAA GGAAATCTAT 75015 |||||||||| |||| | || |||| ||| | |||||||| | | ||||||| | ||||| || GTAATTATAA TAAAGTTTAA ATCACAATCA AATTAATAAT AAAGCAAAAA GAAAATCAAT 648 TTAGCATTAA GAATGACAAT AATATTAAAT ATTTGTTCTT TGATTTTACG TTGATTTAGA 74955 | | || ||| ||||||||| ||| |||||| ||||||||| | ||||| ||| | |||| TCAACACTAA TAATGACAAT AATCTTAAAT GTTTGTTCTT TAGCTTTACA TTGGTCTAGA 708 CAATTGAAAT ACATAAT 74938 ||||| |||| | | || CAATTAAAAT AGANCAT 725 hqPGS_C09HBa0099P03.1-2-_SGN-E320586+ (75175 74938) ******************************************************************************** EST sequence 104 -strand 662 n (File: SGN-E546563-) 1 AACTCAAATG TTACTTTAAC TGTAAATGTT ATTTGTAGTT TTGATGATTT GACAAACAAT 61 GGGACCTCAT AAAGGTATCA GGTTCTCTAA TTGTGTATTG CAGGTGTCTT GTTTGAGGTA 121 TTGCAGAAGA AACAAAACCA GGGACCTAGT AGAGGTACCA GGCTCTCATG AAAATGAGTC 181 AGTCGACTGC CAGCTGGAGA TGGTACAGAA AGTAGGTGCA CACTTCCCGA TGGCGTCAGA 241 AAAGTGTGAC CTTTTCAGCA AATGGCAAAG GAGTTTAGGA AAGTGACTTG CCCACATAAA 301 AGGCACTTTC CAAAACATTT GTTTTTTAGT TTTTGCAACT TGATAAAAAC TTTTCAAGAA 361 CACTTGCAAA GGCTACACAA AAGGTAGAAT CATTCCAAGA ACAACAGCAA CATCTTGAGC 421 TTGTCGTATA GTTGTTTAGG AATTTATTCT CTTGTTGTTA AATTGTAAAC CACTGCTAAA 481 TCTATAAAGG AATTGGTGTG TTGTGTAAAA GTCTAGGTTG TCCAAGTGGG ATAGCTTAGT 541 GGGTAGATTG TTTTTCTACT TAGGCTTGTT GAGCAATAGA GGACTATTGT TTAACGGTAA 601 GATTGATAAC TCTTTCTTAC GTTTGGTGAA AAAAAAAAAA AAAAAAACTC GAGGGGGGCC 661 CG Predicted gene structure (within gDNA segment 76156 to 78571): Exon 1 77038 77630 ( 593 n); cDNA 39 627 ( 589 n); score: 0.915 PPA cDNA 629 648 MATCH C09HBa0099P03.1-2+ SGN-E546563- 0.915 593 0.896 C PGS_C09HBa0099P03.1-2+_SGN-E546563- (77038 77630) Alignment (genomic DNA sequence = upper lines): TTTTGATAAT TTGACAAACT TAGGGACCTC ATAAAGGTAC CGGGTTTTCT ACTTGAGTAT 77097 ||||||| || ||||||||| |||||||| ||||||||| | |||| ||| | ||| |||| TTTTGATGAT TTGACAAACA ATGGGACCTC ATAAAGGTAT CAGGTTCTCT AATTGTGTAT 98 TGCAGGTGTC TTGTTTGAAG TATTGCAGAT GAAACAAACT CAGGGACCTA GTAGAGGTAC 77157 |||||||||| |||||||| | ||||||||| |||||||| |||||||||| |||||||||| TGCAGGTGTC TTGTTTGAGG TATTGCAGAA GAAACAAAAC CAGGGACCTA GTAGAGGTAC 158 CAGGCCCTCA TGATGATGAG CCAGTCAACT GCCAATTGGA GA-CGTACAG AAAGTAGGTG 77216 ||||| |||| ||| ||||| ||||| ||| |||| |||| || |||||| |||||||||| CAGGCTCTCA TGAAAATGAG TCAGTCGACT GCCAGCTGGA GATGGTACAG AAAGTAGGTG 218 CACACTTCTC GATGGCGTCA GAAAAGTGTG ACCTTTCCAA CCAATGGCAA AGAAGTTTAG 77276 |||||||| | |||||||||| |||||||||| |||||| || | |||||||| || ||||||| CACACTTCCC GATGGCGTCA GAAAAGTGTG ACCTTTTCAG CAAATGGCAA AGGAGTTTAG 278 GAAAGTGACT TGCCCATATA AAAGGCACTT TCCTAAACAT TTGTCTTTCA GTTTTTGCAA 77336 |||||||||| |||||| ||| |||||||||| ||| |||||| |||| ||| | |||||||||| GAAAGTGACT TGCCCACATA AAAGGCACTT TCCAAAACAT TTGTTTTTTA GTTTTTGCAA 338 CTTGATAAAA ACTTTTCAAG AACTCTTGCA AAGGCTACAC AAAGCAAAGG CAGAATCATT 77396 |||||||||| |||||||||| ||| |||||| |||||||||| | ||||| ||||||||| CTTGATAAAA ACTTTTCAAG AACACTTGCA AAGGCTACAC --A--AAAGG TAGAATCATT 394 CCTAGGACAA CAGCAACATC TGGAGCTTTT CGTCTAGTTG TTTAGGAATT TATTCTCTTG 77456 || || |||| |||||||||| | |||||| | ||| |||||| |||||||||| |||||||||| CCAAGAACAA CAGCAACATC TTGAGCTTGT CGTATAGTTG TTTAGGAATT TATTCTCTTG 454 TTCTTAAATT GTAAACCACT CCTAAATCTA TAAAGGAATT GGTGTGTTGT GTTAAAAGTC 77516 || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| | |||||||| TTGTTAAATT GTAAACCACT GCTAAATCTA TAAAGGAATT GGTGTGTTGT G-TAAAAGTC 513 TAGGTTGTCC AGGTGGGATA GCTTAGTGGG TAGATTGTTT TTCTACTTTG GCTTGTTGAG 77576 |||||||||| | |||||||| |||||||||| |||||||||| |||||||| | |||||||||| TAGGTTGTCC AAGTGGGATA GCTTAGTGGG TAGATTGTTT TTCTACTTAG GCTTGTTGAG 573 CAATAGAGGT CTATTGCTTA ACGGTAAGAT TGATAACTCT TTCTTACGTT TGGT 77630 ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||| CAATAGAGGA CTATTGTTTA ACGGTAAGAT TGATAACTCT TTCTTACGTT TGGT 627 hqPGS_C09HBa0099P03.1-2+_SGN-E546563- (77038 77630) ******************************************************************************** EST sequence 74 -strand 501 n (File: SGN-E203362-) 1 GCTGGAGATG GTGCAGAAAG TAGGTGCACA CTTCCCGATG GCGTCAGAAA GTGACCCTTC 61 CAACCAATGG CAAAGAAGTT TAGGAAAGTG ACTTGCCCAT ATAAAAGGCA CTTTCCTAAA 121 CACTTTTCTT CAGTTTTTGC AACTTGATAA AAACTTTTCA AGAACTCTTG CAAAGGCTCT 181 ACAAAGTAAA GGCAGAATTA TTCCAAGAAC AACAGCAATA TCTTGAGCTT TTCGTCTAGT 241 TGTTTAGGAA TATATTCTCT TGTTCTTAAA CTGTAAACCA TTCCTGAATC TATAAAGGAT 301 TTGGTGTGTT GTGTTAAAAG TCTAGGTTGT CCAGGTGGGA TAGCTTAGTG GGTAGATTGT 361 TTTCTACTTA GGCTTGTTAA GCAATAGAGG ACTATTGCTT AACGGTAAGA TTCATAACTC 421 TTTCTTACGT TTGGTGTAAT CGTGTTTTAC TTTTGCTTTT GAAGATTAGT GAAAACGATT 481 GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 76071 to 78440): Exon 1 77194 77679 ( 486 n); cDNA 3 484 ( 482 n); score: 0.933 PPA cDNA 485 501 MATCH C09HBa0099P03.1-2+ SGN-E203362- 0.933 486 0.970 C PGS_C09HBa0099P03.1-2+_SGN-E203362- (77194 77679) Alignment (genomic DNA sequence = upper lines): TGGAGA-CGT ACAGAAAGTA GGTGCACACT TCTCGATGGC GTCAGAAAAG TGTGACCTTT 77252 |||||| || ||||||||| |||||||||| || ||||||| ||||| ||| |||||| || TGGAGATGGT GCAGAAAGTA GGTGCACACT TCCCGATGGC GTCAG-AAA- -GTGACCCTT 59 CCAACCAATG GCAAAGAAGT TTAGGAAAGT GACTTGCCCA TATAAAAGGC ACTTTCCTAA 77312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACCAATG GCAAAGAAGT TTAGGAAAGT GACTTGCCCA TATAAAAGGC ACTTTCCTAA 119 ACATTTGTCT TTCAGTTTTT GCAACTTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 77372 ||| || || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTTTTC- TTCAGTTTTT GCAACTTGAT AAAAACTTTT CAAGAACTCT TGCAAAGGCT 178 ACACAAAGCA AAGGCAGAAT CATTCCTAGG ACAACAGCAA CATCTGGAGC TTTTCGTCTA 77432 |||||| | |||||||||| ||||| || |||||||||| |||| |||| |||||||||| CTACAAAGTA AAGGCAGAAT TATTCCAAGA ACAACAGCAA TATCTTGAGC TTTTCGTCTA 238 GTTGTTTAGG AATTTATTCT CTTGTTCTTA AATTGTAAAC CACTCCTAAA TCTATAAAGG 77492 |||||||||| ||| |||||| |||||||||| || ||||||| || |||| || |||||||||| GTTGTTTAGG AATATATTCT CTTGTTCTTA AACTGTAAAC CATTCCTGAA TCTATAAAGG 298 AATTGGTGTG TTGTGTTAAA AGTCTAGGTT GTCCAGGTGG GATAGCTTAG TGGGTAGATT 77552 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGTGTG TTGTGTTAAA AGTCTAGGTT GTCCAGGTGG GATAGCTTAG TGGGTAGATT 358 GTTTTTCTAC TTTGGCTTGT TGAGCAATAG AGGTCTATTG CTTAACGGTA AGATTGATAA 77612 | |||||||| || ||||||| | |||||||| ||| |||||| |||||||||| ||||| |||| G-TTTTCTAC TTAGGCTTGT TAAGCAATAG AGGACTATTG CTTAACGGTA AGATTCATAA 417 CTCTTTCTTA CGTTTGGTGT AATCGTGTTT CGCTTTTGCT TTTGAAGATT AGTGAAAACG 77672 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| CTCTTTCTTA CGTTTGGTGT AATCGTGTTT TACTTTTGCT TTTGAAGATT AGTGAAAACG 477 ATTGAAA 77679 ||||||| ATTGAAA 484 hqPGS_C09HBa0099P03.1-2+_SGN-E203362- (77194 77679) ******************************************************************************** EST sequence 36 +strand 661 n (File: SGN-E354195+) 1 TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 61 ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATTC 121 ATTTCTACTT AGGCTTGTAA AGCAATAGAG AATATTGCTT GAACGTGAGA TTAAAAACTT 181 TTTCTCATAT TTGTTGTAAT CGTGTTTCAC TTTTGCTTGT GAAGATTAGT GAAAACGATT 241 GAAAATCCTG TGAGACAAGT CGTGGTTTTA CTCCCTTAAG CAAGGAGGTT TCCACGTAAA 301 ATGTTGTGTT GTTTAAACTG CATTTACTTT CTGTTCATAC TTTTTAGTGT GTCAAGTGAA 361 CTGGGTCATT GACTTATAAG TGAAGGCATT TATTCTATCA GGCACCAAGC AACACATTAG 421 AGGGAAGCAT TTTATAAAGT ATTTGTTTGT ATTTTATTTA TATTTTATCT ACTATGTTCA 481 ATTTTTAAAC TGGAGTCTAA CTGATTCACA TATTCTCCAT CGAGAAACAC ATCAGAGGGA 541 AGCACTCTAT GAAGTATTTT ATTTAATTTT TTACCTGATC TTTTCAATAT TTATATTAGA 601 GTTCAAATTA TTTAATTAGA TTTTGACAAC AAACAACATT GTCGAGGGAA GCACACTATG 661 A Predicted gene structure (within gDNA segment 74865 to 80423): Exon 1 77434 77836 ( 403 n); cDNA 1 400 ( 400 n); score: 0.818 MATCH C09HBa0099P03.1-2+ SGN-E354195+ 0.818 403 0.610 C PGS_C09HBa0099P03.1-2+_SGN-E354195+ (77434 77836) Alignment (genomic DNA sequence = upper lines): TTGTTTAGGA ATTTATTCTC TTGTTCTTAA ATTGTAAACC ACTCCTAAAT CTATAAAGGA 77493 ||| |||||| || || |||| ||| ||||| ||| ||||| | |||| || |||||||||| TTGCTTAGGA ATATAATCTC TTGGTCTTAC ATTATAAACT ATTCCTGAAA CTATAAAGGA 60 ATTGGTGTGT TGTGTTAAAA GTCTAGGTTG TCCAGGTGGG ATAGCTTAGT GGGTAGATTG 77553 || ||| || ||||| ||| | || |||| || | |||| |||||||||| ||||||||| ATCAGTGGGT AGTGTTTAAA TTGTAAGTTG TCTATGTGGT ATAGCTTAGT GGGTAGATT- 119 TTTTTCTACT TTGGCTTGTT GAGCAATAGA GGTCTATTGC TTAACGGTAA GATTGATAAC 77613 |||||||| | ||||||| ||||||||| | |||||| || | || | |||| | ||| CATTTCTACT TAGGCTTGTA AAGCAATAGA -GAATATTGC TTGAACGTGA GATTAAAAAC 178 TCTTTCTTAC GTTTGGTGTA ATCGTGTTTC GCTTTTGCTT TTGAAGATTA GTGAAAACGA 77673 | ||||| | |||| |||| |||||||||| ||||||||| ||||||||| |||||||||| TTTTTCTCAT ATTTGTTGTA ATCGTGTTTC ACTTTTGCTT GTGAAGATTA GTGAAAACGA 238 TTGAAAATCC TGTGAGATAG GTCGTGGTTT TACTCCCTTA AGCAAGGAGG TTTCCACGTA 77733 |||||||||| ||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TTGAAAATCC TGTGAGACAA GTCGTGGTTT TACTCCCTTA AGCAAGGAGG TTTCCACGTA 298 AAATCATTGT GTTAATTTTA CTGCATTTAA CTTTCTGGTA ATTTTCTGAA GTAAAGTAAG 77793 |||| |||| ||| || | |||||||| | ||||||| | || | | | || ||| AAAT-GTTGT GTTGTTTAAA CTGCATTT-A CTTTCTGTTC ATACTTTTTA GTGTGTCAAG 356 AGACCTGGTC CATT-ACTAA TAAGTGAAGG CATAAATTCT ATCA 77836 || |||| |||| ||| | |||||||||| ||| ||||| |||| TGAACTGGGT CATTGACTTA TAAGTGAAGG CATTTATTCT ATCA 400 hqPGS_C09HBa0099P03.1-2+_SGN-E354195+ (77434 77836) Total number of EST alignments reported: 109 ________________________________________________________________________________ Predicted gene locations (15) in segment 1 to 80423: PGL 1 (+ strand): 3907 10258 AGS-1 (3907 4085,4191 4225,4433 4570,5380 5448,6473 6630,6740 6800) SCR (e 1.000 d 1.000 a 0.871,e 1.000 d 0.972 a 1.000,e 1.000 d 0.998 a 0.439,e 1.000 d 0.843 a 0.935,e 1.000 d 0.987 a 0.805,e 1.000) Exon 1 3907 4085 ( 179 n); score: 1.000 Intron 1 4086 4190 ( 105 n); Pd: 1.000 Pa: 0.871 Exon 2 4191 4225 ( 35 n); score: 1.000 Intron 2 4226 4432 ( 207 n); Pd: 0.972 Pa: 1.000 Exon 3 4433 4570 ( 138 n); score: 1.000 Intron 3 4571 5379 ( 809 n); Pd: 0.998 Pa: 0.439 Exon 4 5380 5448 ( 69 n); score: 1.000 Intron 4 5449 6472 (1024 n); Pd: 0.843 Pa: 0.935 Exon 5 6473 6630 ( 158 n); score: 1.000 Intron 5 6631 6739 ( 109 n); Pd: 0.987 Pa: 0.805 Exon 6 6740 6800 ( 61 n); score: 1.000 PGS (3907 4085,4191 4225,4433 4570,5380 5448,6473 6630,6740 6800) SGN-E333474+ 3-phase translation of AGS-1 (+strand): . . . . . . 3907 CGAGATCGTCAGTTCTCCTGCTCCGGCAGCCATGGCCGCCAAAGCAGCTGCTATACGCAA R D R Q F S C S G S H G R Q S S C Y T Q E I V S S P A P A A M A A K A A A I R K R S S V L L L R Q P W P P K Q L L Y A . . . . . . 3967 GAGTAATAGATCGGAGAATTTCATTCAAAAACTCGTTAAAAATCCTAAAATACCTTTTGC E - - I G E F H S K T R - K S - N T F C S N R S E N F I Q K L V K N P K I P F A R V I D R R I S F K N S L K I L K Y L L . . . . . . : 4027 TATTGCAATACTCATTGCTGATGCCATCCTCGTTGCGTTGATTATCGCTTACGTTCCAT : A Y C N T H C - C H P R C V D Y R L R S I : I A I L I A D A I L V A L I I A Y V P : Y L L Q Y S L L M P S S L R - L S L T F H : . . . . : . . 4192 TACGAAAATTGATTGGGATGCTTATATGTCTCAG : GTTACTGGTTTTCTCGAAGGAGAGAG Y E N - L G C L Y V S : G Y W F S R R R E T K I D W D A Y M S Q : V T G F L E G E R I R K L I G M L I C L R : L L V F S K E R . . . . . . 4459 GGATTATAGTAACTTGAAAGGTGACACGGGGCCTCTAGTTTACCCAGCAGGCTTTCTTTA G L - - L E R - H G A S S L P S R L S L D Y S N L K G D T G P L V Y P A G F L Y G I I V T - K V T R G L - F T Q Q A F F . . . . . . : 4519 TATTTACTCTGCTATACAATATGTTACTGGAGGTCAAGTCTATCCTGCTCAG : ATTCTTTT Y L L C Y T I C Y W R S S L S C S : D S F I Y S A I Q Y V T G G Q V Y P A Q : I L F I F T L L Y N M L L E V K S I L L R : F F . . . . . . 5388 TGGCTTTCTCTACGTGCTGGATCTTGCAATTGTCTTGTTCATCTACTTGAAGACTGATGT W L S L R A G S C N C L V H L L E D - C G F L Y V L D L A I V L F I Y L K T D V L A F S T C W I L Q L S C S S T - R L M . : . . . . . 5448 G : GTACCTTGGTGGGCTCTCTCCTTGCTTTCTCTGTCGAAAAGAGTTCACTCTATCTTTGT : G T L V G S L L A F S V E K S S L Y L C : V P W W A L S L L S L S K R V H S I F V W : Y L G G L S P C F L C R K E F T L S L . . . . . . 6532 TCTTCGATTATTTAATGATTGTTTTGCCACTACTCTCCTCCATGCTGCATTGGTCTCAAT S S I I - - L F C H Y S P P C C I G L N L R L F N D C F A T T L L H A A L V S I F F D Y L M I V L P L L S S M L H W S Q . . . . : . . 6592 TATCTGCCAAAAATGGCATCTAGGGTTGGTAATTTTCAG : CGGAGCTGTTTCCATAAAGAT Y L P K M A S R V G N F Q : R S C F H K D I C Q K W H L G L V I F S : G A V S I K M L S A K N G I - G W - F S : A E L F P - R . . . . 6761 GAATGTGCTCCTGTATGCACCACCTCTGTTGCTCCTCATG E C A P V C T T S V A P H N V L L Y A P P L L L L M - M C S C M H H L C C S S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-1_AGS-1_PPS_1 (3908 4085,4191 4225,4433 4570,5380 5448,6473 6630,6740 6800) (frame '2'; 639 bp, 213 residues) 1 EIVSSPAPAA MAAKAAAIRK SNRSENFIQK LVKNPKIPFA IAILIADAIL VALIIAYVPY 61 TKIDWDAYMS QVTGFLEGER DYSNLKGDTG PLVYPAGFLY IYSAIQYVTG GQVYPAQILF 121 GFLYVLDLAI VLFIYLKTDV VPWWALSLLS LSKRVHSIFV LRLFNDCFAT TLLHAALVSI 181 ICQKWHLGLV IFSGAVSIKM NVLLYAPPLL LLM AGS-2 (6922 6961,7320 7505,8201 8317,8489 8595,8732 8810,9624 9680,9764 10258) SCR (e 1.000 d 0.949 a 0.977,e 1.000 d 0.549 a 0.996,e 0.991 d 0.996 a 0.993,e 1.000 d 0.976 a 0.967,e 1.000 d 0.994 a 0.776,e 1.000 d 0.996 a 0.988,e 0.991) Exon 1 6922 6961 ( 40 n); score: 1.000 Intron 1 6962 7319 ( 358 n); Pd: 0.949 Pa: 0.977 Exon 2 7320 7505 ( 186 n); score: 1.000 Intron 2 7506 8200 ( 695 n); Pd: 0.549 Pa: 0.996 Exon 3 8201 8317 ( 117 n); score: 0.991 Intron 3 8318 8488 ( 171 n); Pd: 0.996 Pa: 0.993 Exon 4 8489 8595 ( 107 n); score: 1.000 Intron 4 8596 8731 ( 136 n); Pd: 0.976 Pa: 0.967 Exon 5 8732 8810 ( 79 n); score: 1.000 Intron 5 8811 9623 ( 813 n); Pd: 0.994 Pa: 0.776 Exon 6 9624 9680 ( 57 n); score: 1.000 Intron 6 9681 9763 ( 83 n); Pd: 0.996 Pa: 0.988 Exon 7 9764 10258 ( 495 n); score: 0.991 PGS (6922 6961,7320 7505,8201 8317,8489 8595,8732 8790) SGN-E233813+ PGS (6922 6961,7320 7505,8201 8317,8489 8543) SGN-E233326+ PGS (8498 8595,8732 8810,9624 9680,9764 10258) SGN-E309356+ 3-phase translation of AGS-2 (+strand): . . . . : . . 6922 TGGAGTTATATCTGCTTTAGCAGGGGCTGCATTAGTGCAG : GTGAGTCGGTTACGAGTATA W S Y I C F S R G C I S A : G E S V T S I G V I S A L A G A A L V Q : V S R L R V Y E L Y L L - Q G L H - C R : - V G Y E Y . . . . . . 7340 CTTCTGTTGAATGGAGCTTCTTCTGATCAAATTCTTTACCAATGATCATGGTGATTGGTG L L L N G A S S D Q I L Y Q - S W - L V F C - M E L L L I K F F T N D H G D W - T S V E W S F F - S N S L P M I M V I G . . . . . . 7400 ATTGGTGATTGGTGCAGATTCTCATAGGGCTTCCTTTTATCCTGTCACATCCAGCTTCAT I G D W C R F S - G F L L S C H I Q L H L V I G A D S H R A S F Y P V T S S F I D W - L V Q I L I G L P F I L S H P A S . . . . . : . 7460 ATTTATCAAACGCTTTCAATCTTGGTCGGGTTTTCATCCACTTCTG : GTCTGTCAACTTCA I Y Q T L S I L V G F S S T S : G L S T S F I K R F Q S W S G F H P L L : V C Q L Q Y L S N A F N L G R V F I H F W : S V N F . . . . . . 8215 AATTTGTTCCTGAAGACATCTTTGTTTCTAAAGCTTTTGCTCTCTCTTTGCTAGTTGCTC N L F L K T S L F L K L L L S L C - L L I C S - R H L C F - S F C S L F A S C S K F V P E D I F V S K A F A L S L L V A . . . . . : . 8275 ATCTCAGTCTGCTATTGGTGTTTGCTCATTACAGATGGTGCAG : GCATGAAGGAGGACTGT I S V C Y W C L L I T D G A : G M K E D C S Q S A I G V C S L Q M V Q : A - R R T V H L S L L L V F A H Y R W C R : H E G G L . . . . . . 8506 TTGCTGTTGTGCGTTCTAAAATCATTCAACTGAAGCTCAGAGTTTCTCAGAGAAATCCTT L L L C V L K S F N - S S E F L R E I L C C C A F - N H S T E A Q S F S E K S F F A V V R S K I I Q L K L R V S Q R N P . . . : . . . 8566 CCTCAACCAAGAAAGTCCTTCAAGCTGACC : ATATTGTGACGACTATGTTTGTTGGGAATT P Q P R K S F K L T : I L - R L C L L G I L N Q E S P S S - P : Y C D D Y V C W E F S S T K K V L Q A D : H I V T T M F V G N . . . . . : . 8762 TCATTGGCATTATATGTGCCCGATCCCTCCATTACCAATTTTATTCTTG : GTACTTCTATT S L A L Y V P D P S I T N F I L : G T S I H W H Y M C P I P P L P I L F L : V L L L F I G I I C A R S L H Y Q F Y S W : Y F Y . . . . . : . 9635 GCTTACCATATTTATTGTGGAAAGCACCATTTCCAACCCTCCTACG : TTTATTCTTGTTCG A Y H I Y C G K H H F Q P S Y : V Y S C S L T I F I V E S T I S N P P T : F I L V R C L P Y L L W K A P F P T L L R : L F L F . . . . . . 9778 CAGCTGTAGAGTTTTGCTGGAACGTCTTCCCCTCCAACACTTGCTCATCACTTGTCCTCC Q L - S F A G T S S P P T L A H H L S S S C R V L L E R L P L Q H L L I T C P P A A V E F C W N V F P S N T C S S L V L . . . . . . 9838 TCTGTGTCCATTTGATCATATTGGCCGGTCTATGGATAAGTTCACCAGAATATCCGTACG S V S I - S Y W P V Y G - V H Q N I R T L C P F D H I G R S M D K F T R I S V R L C V H L I I L A G L W I S S P E Y P Y . . . . . . 9898 TCGAAGAAAAAACAACTTATAAATCTACACCTAAGAAGAAGGCCAGATAAAGCACTATCT S K K K Q L I N L H L R R R P D K A L S R R K N N L - I Y T - E E G Q I K H Y L V E E K T T Y K S T P K K K A R - S T I . . . . . . 9958 GGTTATGCATGTGAATGGCAGATAAAGAAAAAACAACTGATAAAACAAAGTTTTTGTTTT G Y A C E W Q I K K K Q L I K Q S F C F V M H V N G R - R K N N - - N K V F V F W L C M - M A D K E K T T D K T K F L F . . . . . . 10018 TCTGTTTCTTTTCGTAGTGTTAATGCTTACAGTTTTGTTAGATGGTATACAAAACCAGAA S V S F R S V N A Y S F V R W Y T K P E L F L F V V L M L T V L L D G I Q N Q K F C F F S - C - C L Q F C - M V Y K T R . . . . . . 10078 AGGTGGTAACAACCACACGAAGATCATCCAATGGCATCAAGGATGAATATTTTCTGGGGG R W - Q P H E D H P M A S R M N I F W G G G N N H T K I I Q W H Q G - I F S G G K V V T T T R R S S N G I K D E Y F L G . . . . . . 10138 TTTTCAACATTTGAGGATTTCATTAGCTCAAATCTGAATTAGACTTGAATATTTTAGAAG F S T F E D F I S S N L N - T - I F - K F Q H L R I S L A Q I - I R L E Y F R R V F N I - G F H - L K S E L D L N I L E . . . . . . 10198 GTCAACCTATTTTATTTATCTAAATCTGTATGGTGTACTATTTATTGTCAAGATTTAAGG V N L F Y L S K S V W C T I Y C Q D L R S T Y F I Y L N L Y G V L F I V K I - G G Q P I L F I - I C M V Y Y L L S R F K . 10258 A Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-1_AGS-2_PPS_1 (7408 7505,8201 8317,8489 8595,8732 8810,9624 9680,9764 9947) (frame '0'; 639 bp, 213 residues) 1 LVQILIGLPF ILSHPASYLS NAFNLGRVFI HFWSVNFKFV PEDIFVSKAF ALSLLVAHLS 61 LLLVFAHYRW CRHEGGLFAV VRSKIIQLKL RVSQRNPSST KKVLQADHIV TTMFVGNFIG 121 IICARSLHYQ FYSWYFYCLP YLLWKAPFPT LLRLFLFAAV EFCWNVFPSN TCSSLVLLCV 181 HLIILAGLWI SSPEYPYVEE KTTYKSTPKK KAR- PGL 2 (+ strand): 10573 11454 AGS-1 (10573 10579,10860 11454) SCR (e 0.714 d 0.504 a 0.000,e 1.000) Exon 1 10573 10579 ( 7 n); score: 0.714 Intron 1 10580 10859 ( 280 n); Pd: 0.504 Pa: 0.000 Exon 2 10860 11454 ( 595 n); score: 1.000 PGS (10573 10579,10860 11454) SGN-E350785+ PGS (10876 11176) SGN-E308491- PGS (10891 11443) SGN-E302652- PGS (10904 11391) SGN-E304451- PGS (10920 11362) SGN-E307505- PGS (10920 11362) SGN-E545021- PGS (10924 11362) SGN-E549138+ 3-phase translation of AGS-1 (+strand): . : . . . . . 10573 TTTTTCG : TAGAGAATAATACATGTATTAACAAACACCAAATGAACATTGTATTAACCATA F F : V E N N T C I N K H Q M N I V L T I F S : - R I I H V L T N T K - T L Y - P - F R : R E - Y M Y - Q T P N E H C I N H . . . . . . 10913 AACCACTGCCAAAGCACCACTGTCACTTTATTTGAAATTGCAACTGAAAAGAAAAATACT N H C Q S T T V T L F E I A T E K K N T T T A K A P L S L Y L K L Q L K R K I L K P L P K H H C H F I - N C N - K E K Y . . . . . . 10973 CCTACTTAAAGTATACAATATAAACACTACGAAATTATTCAAAACAATTACACTTACTAA P T - S I Q Y K H Y E I I Q N N Y T Y - L L K V Y N I N T T K L F K T I T L T N S Y L K Y T I - T L R N Y S K Q L H L L . . . . . . 11033 TAATTAATTAACATCGATTAATTCGATCTTTAATTAATTTAACTCCGGCAACGAGTAATA - L I N I D - F D L - L I - L R Q R V I N - L T S I N S I F N - F N S G N E - - I I N - H R L I R S L I N L T P A T S N . . . . . . 11093 GCACTGCAACCACGTGTATACGGATTAGCTTCAGCACCTGTTTTGCAGTTATAATACGAC A L Q P R V Y G L A S A P V L Q L - Y D H C N H V Y T D - L Q H L F C S Y N T T S T A T T C I R I S F S T C F A V I I R . . . . . . 11153 GCACCTCTTCTAGAACACGGAACACTGTTACTCTGCAGCGCACCATAGCTTATATAATCA A P L L E H G T L L L C S A P - L I - S H L F - N T E H C Y S A A H H S L Y N Q R T S S R T R N T V T L Q R T I A Y I I . . . . . . 11213 GTAGTTGCTAATATACGCCTGTTGCTCTCCGAATCCATTTCGAATTCTCCGGCAGCCATA V V A N I R L L L S E S I S N S P A A I - L L I Y A C C S P N P F R I L R Q P Y S S C - Y T P V A L R I H F E F S G S H . . . . . . 11273 CACTCCGCTATCGAACCTTCACAGCTATCGGCGGATTTCATCGGAATCCAACCGCTCACG H S A I E P S Q L S A D F I G I Q P L T T P L S N L H S Y R R I S S E S N R S R T L R Y R T F T A I G G F H R N P T A H . . . . . . 11333 TCGAAATCGCCGCCGGTAGCATCGCCGGAGATGATCAAAGCTGCGATCAATAATGAAGAG S K S P P V A S P E M I K A A I N N E E R N R R R - H R R R - S K L R S I M K R V E I A A G S I A G D D Q S C D Q - - R . . . . . . 11393 ATGATGAAAATGGAACAAAAGGAATTCGCAGCCATTGTTGATAAATTTTTCAATGCTGAT M M K M E Q K E F A A I V D K F F N A D - - K W N K R N S Q P L L I N F S M L I D D E N G T K G I R S H C - - I F Q C - . 11453 CG S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-2_AGS-1_PPS_1 (11210 11452) (frame '1'; 243 bp, 81 residues) 1 SVVANIRLLL SESISNSPAA IHSAIEPSQL SADFIGIQPL TSKSPPVASP EMIKAAINNE 61 EMMKMEQKEF AAIVDKFFNA D PGL 3 (- strand): 14364 13808 AGS-1 (14364 13808) SCR (e 0.782) Exon 1 14364 13808 ( 557 n); score: 0.782 PGS (14144 13808) SGN-E228234+ PGS (14144 13808) SGN-E240450+ PGS (14144 13808) SGN-E241852+ PGS (14364 14129) SGN-E369471- PGS (14364 14138) SGN-E369089- 3-phase translation of AGS-1 (-strand): . . . . . . 14364 GGCCGTTCAAAATTGAATTGAAACCGATAAGTCGAACTGATAAAAAAGTTATTGATTTAT G R S K L N - N R - V E L I K K L L I Y A V Q N - I E T D K S N - - K S Y - F I P F K I E L K P I S R T D K K V I D L . . . . . . 14304 AGTATTGGGTTATTGGTTTAGTGGTTTTGATAACGGTTTTGATTTTTTTTTGTTATCGGG S I G L L V - W F - - R F - F F F V I G V L G Y W F S G F D N G F D F F L L S G - Y W V I G L V V L I T V L I F F C Y R . . . . . . 14244 TTATCGGTTCTTAACGGTTTAAAGTTTTTTCTTAACGGGTTAATCGATAACTCGATAGTA L S V L N G L K F F L N G L I D N S I V Y R F L T V - S F F L T G - S I T R - - V I G S - R F K V F S - R V N R - L D S . . . . . . 14184 AATTAAATAATTATATTTATACCATTTTGTATATAAAGTTCTCGACTTAGAGTTTAATTT N - I I I F I P F C I - S S R L R V - F I K - L Y L Y H F V Y K V L D L E F N F K L N N Y I Y T I L Y I K F S T - S L I . . . . . . 14124 CCTACTTTTATTTTTAATTGTCTCAAACACTTGATTATTCTACAATGTGAAAGTGTTTGC P T F I F N C L K H L I I L Q C E S V C L L L F L I V S N T - L F Y N V K V F A S Y F Y F - L S Q T L D Y S T M - K C L . . . . . . 14064 TTTTGAGCGAGATGTAACTTGTGAACTCAAGTACATGGTTTATTTGGTTTGTCACCTTGT F - A R C N L - T Q V H G L F G L S P C F E R D V T C E L K Y M V Y L V C H L V L L S E M - L V N S S T W F I W F V T L . . . . . . 14004 TTCTAAGTGATTTTTAATATTTTTTTGTTTGTGTCAAATCTTAACGATTAAATCGATAGC F - V I F N I F L F V S N L N D - I D S S K - F L I F F C L C Q I L T I K S I A F L S D F - Y F F V C V K S - R L N R - . . . . . . 13944 CGAACCGATAACGATAAAAAACTGATAACTCAATATCTTAATGGTTCTATCACGGTTTAG R T D N D K K L I T Q Y L N G S I T V - E P I T I K N - - L N I L M V L S R F S P N R - R - K T D N S I S - W F Y H G L . . . . . . 13884 CATCTCTACAAACTGATAATCAATAAGCCAATTCGATAGACTTTAAAATCAAATCGAACC H L Y K L I I N K P I R - T L K S N R T I S T N - - S I S Q F D R L - N Q I E P A S L Q T D N Q - A N S I D F K I K S N . . 13824 AATCGATACATAGCCCT N R Y I A I D T - P Q S I H S P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 13808 AGGGCTATGTATCGATTGGTTCGATTTGATTTTAAAGTCTATCGAATTGGCTTATTGATT R A M Y R L V R F D F K V Y R I G L L I G L C I D W F D L I L K S I E L A Y - L G Y V S I G S I - F - S L S N W L I D . . . . . . 13868 ATCAGTTTGTAGAGATGCTAAACCGTGATAGAACCATTAAGATATTGAGTTATCAGTTTT I S L - R C - T V I E P L R Y - V I S F S V C R D A K P - - N H - D I E L S V F Y Q F V E M L N R D R T I K I L S Y Q F . . . . . . 13928 TTATCGTTATCGGTTCGGCTATCGATTTAATCGTTAAGATTTGACACAAACAAAAAAATA L S L S V R L S I - S L R F D T N K K I Y R Y R F G Y R F N R - D L T Q T K K Y F I V I G S A I D L I V K I - H K Q K N . . . . . . 13988 TTAAAAATCACTTAGAAACAAGGTGACAAACCAAATAAACCATGTACTTGAGTTCACAAG L K I T - K Q G D K P N K P C T - V H K - K S L R N K V T N Q I N H V L E F T S I K N H L E T R - Q T K - T M Y L S S Q . . . . . . 14048 TTACATCTCGCTCAAAAGCAAACACTTTCACATTGTAGAATAATCAAGTGTTTGAGACAA L H L A Q K Q T L S H C R I I K C L R Q Y I S L K S K H F H I V E - S S V - D N V T S R S K A N T F T L - N N Q V F E T . . . . . . 14108 TTAAAAATAAAAGTAGGAAATTAAACTCTAAGTCGAGAACTTTATATACAAAATGGTATA L K I K V G N - T L S R E L Y I Q N G I - K - K - E I K L - V E N F I Y K M V - I K N K S R K L N S K S R T L Y T K W Y . . . . . . 14168 AATATAATTATTTAATTTACTATCGAGTTATCGATTAACCCGTTAAGAAAAAACTTTAAA N I I I - F T I E L S I N P L R K N F K I - L F N L L S S Y R L T R - E K T L N K Y N Y L I Y Y R V I D - P V K K K L - . . . . . . 14228 CCGTTAAGAACCGATAACCCGATAACAAAAAAAAATCAAAACCGTTATCAAAACCACTAA P L R T D N P I T K K N Q N R Y Q N H - R - E P I T R - Q K K I K T V I K T T K T V K N R - P D N K K K S K P L S K P L . . . . . . 14288 ACCAATAACCCAATACTATAAATCAATAACTTTTTTATCAGTTCGACTTATCGGTTTCAA T N N P I L - I N N F F I S S T Y R F Q P I T Q Y Y K S I T F L S V R L I G F N N Q - P N T I N Q - L F Y Q F D L S V S . . 14348 TTCAATTTTGAACGGCC F N F E R S I L N G I Q F - T A Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (14364 13919,13875 13853) SCR (e 0.900 d 0.000 a 0.000,e 0.870) Exon 1 14364 13919 ( 446 n); score: 0.900 Intron 1 13918 13876 ( 43 n); Pd: 0.000 Pa: 0.000 Exon 2 13875 13853 ( 23 n); score: 0.870 PGS (14364 13919,13875 13853) SGN-E211987- 3-phase translation of AGS-2 (-strand): . . . . . . 14364 GGCCGTTCAAAATTGAATTGAAACCGATAAGTCGAACTGATAAAAAAGTTATTGATTTAT G R S K L N - N R - V E L I K K L L I Y A V Q N - I E T D K S N - - K S Y - F I P F K I E L K P I S R T D K K V I D L . . . . . . 14304 AGTATTGGGTTATTGGTTTAGTGGTTTTGATAACGGTTTTGATTTTTTTTTGTTATCGGG S I G L L V - W F - - R F - F F F V I G V L G Y W F S G F D N G F D F F L L S G - Y W V I G L V V L I T V L I F F C Y R . . . . . . 14244 TTATCGGTTCTTAACGGTTTAAAGTTTTTTCTTAACGGGTTAATCGATAACTCGATAGTA L S V L N G L K F F L N G L I D N S I V Y R F L T V - S F F L T G - S I T R - - V I G S - R F K V F S - R V N R - L D S . . . . . . 14184 AATTAAATAATTATATTTATACCATTTTGTATATAAAGTTCTCGACTTAGAGTTTAATTT N - I I I F I P F C I - S S R L R V - F I K - L Y L Y H F V Y K V L D L E F N F K L N N Y I Y T I L Y I K F S T - S L I . . . . . . 14124 CCTACTTTTATTTTTAATTGTCTCAAACACTTGATTATTCTACAATGTGAAAGTGTTTGC P T F I F N C L K H L I I L Q C E S V C L L L F L I V S N T - L F Y N V K V F A S Y F Y F - L S Q T L D Y S T M - K C L . . . . . . 14064 TTTTGAGCGAGATGTAACTTGTGAACTCAAGTACATGGTTTATTTGGTTTGTCACCTTGT F - A R C N L - T Q V H G L F G L S P C F E R D V T C E L K Y M V Y L V C H L V L L S E M - L V N S S T W F I W F V T L . . . . . . 14004 TTCTAAGTGATTTTTAATATTTTTTTGTTTGTGTCAAATCTTAACGATTAAATCGATAGC F - V I F N I F L F V S N L N D - I D S S K - F L I F F C L C Q I L T I K S I A F L S D F - Y F F V C V K S - R L N R - . . . : . . 13944 CGAACCGATAACGATAAAAAACTGAT : AAACTGATAATCAATAAGCCAAT R T D N D K K L I : N - - S I S Q E P I T I K N - : - T D N Q - A N P N R - R - K T D : K L I I N K P Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 20303 15525 AGS-1 (16616 16584,16372 16272,16105 16009,15823 15525) SCR (e 1.000 d 0.996 a 0.982,e 1.000 d 0.930 a 0.997,e 1.000 d 0.940 a 0.993,e 0.993) Exon 1 16616 16584 ( 33 n); score: 1.000 Intron 1 16583 16373 ( 211 n); Pd: 0.996 Pa: 0.982 Exon 2 16372 16272 ( 101 n); score: 1.000 Intron 2 16271 16106 ( 166 n); Pd: 0.930 Pa: 0.997 Exon 3 16105 16009 ( 97 n); score: 1.000 Intron 3 16008 15824 ( 185 n); Pd: 0.940 Pa: 0.993 Exon 4 15823 15525 ( 299 n); score: 0.993 PGS (16616 16584,16372 16272,16105 16009,15823 15525) SGN-E548311- PGS (16616 16584,16372 16272,16105 16009,15823 15525) SGN-E539991+ PGS (16615 16584,16372 16272,16105 16009,15823 15525) SGN-E288647+ 3-phase translation of AGS-1 (-strand): . . . . : . . 16616 CAAAAGGCAGTCGCTTCCCTCCCATCCATAGGG : GAAGATTTTGACCAAAGAACTCAGTCA Q K A V A S L P S I G : E D F D Q R T Q S K R Q S L P S H P - G : K I L T K E L S Q K G S R F P P I H R : G R F - P K N S V . . . . . . 16345 ATAATTGCAAAATCAAAACTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCT I I A K S K L K S E I R F K A E V V S P - L Q N Q N - S Q R S G S R R R S F H L N N C K I K T E V R D P V Q G G G R F T . . : . . . . 16285 GCAGAGTGGGAAAG : GTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAA A E W E R : W I R D Q Q K S E G V T P G E Q S G K : G G - G I N R S L K V L L L V K C R V G K : V D K G S T E V - R C Y S W - . . . . . . : 16059 GATGTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAG : GGGATGCCT D V Y I I L R L D G R V R R S G K : G M P M S T L Y F V - M V V F D D Q E R : G C L R C L H Y T S S R W S C S T I R K : G D A . . . . . . 15814 GACTGGGCTCAAATTTTAAAGGAACTGCCTCCAATGGAAGCAATATTAAGCAAGCTAGAA D W A Q I L K E L P P M E A I L S K L E T G L K F - R N C L Q W K Q Y - A S - K - L G S N F K G T A S N G S N I K Q A R . . . . . . 15754 AGATAATACAAGTTCCTCTTGCTGAGTGCTAAAATCTTTTCACTACCTGGTGTATTTTCG R - Y K F L L L S A K I F S L P G V F S D N T S S S C - V L K S F H Y L V Y F R K I I Q V P L A E C - N L F T T W C I F . . . . . . 15694 GTCAGTCTCCTTACTTGAAATATAAAAGGCACTAATTGATGCCTGTTGAGCTTGTCTGTT V S L L T - N I K G T N - C L L S L S V S V S L L E I - K A L I D A C - A C L F G Q S P Y L K Y K R H - L M P V E L V C . . . . . . 15634 TTACGTTTCCATTTTTTCACGAACATATACTGTACTATAATTCTATAAATTGATATTGAT L R F H F F T N I Y C T I I L - I D I D Y V S I F S R T Y T V L - F Y K L I L I F T F P F F H E H I L Y Y N S I N - Y - . . . . . 15574 ATTTGCCAGATGAATATCCAAAGGATATGAAATCCCATAGGAAATAGAAA I C Q M N I Q R I - N P I G N R F A R - I S K G Y E I P - E I E Y L P D E Y P K D M K S H R K - K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-4_AGS-1_PPS_1 (16616 16584,16372 16272,16105 16009,15823 15749) (frame '1'; 303 bp, 101 residues) 1 QKAVASLPSI GEDFDQRTQS IIAKSKLKSE IRFKAEVVSP AEWERWIRDQ QKSEGVTPGE 61 DVYIILRLDG RVRRSGKGMP DWAQILKELP PMEAILSKLE R- AGS-2 (20303 20050,18482 18379,18021 17886,17716 17485,17338 17181,16772 16702) SCR (e 1.000 d 0.998 a 0.988,e 1.000 d 0.998 a 0.999,e 1.000 d 0.996 a 0.974,e 1.000 d 0.994 a 0.175,e 1.000 d 0.890 a 0.997,e 1.000) Exon 1 20303 20050 ( 254 n); score: 1.000 Intron 1 20049 18483 (1567 n); Pd: 0.998 Pa: 0.988 Exon 2 18482 18379 ( 104 n); score: 1.000 Intron 2 18378 18022 ( 357 n); Pd: 0.998 Pa: 0.999 Exon 3 18021 17886 ( 136 n); score: 1.000 Intron 3 17885 17717 ( 169 n); Pd: 0.996 Pa: 0.974 Exon 4 17716 17485 ( 232 n); score: 1.000 Intron 4 17484 17339 ( 146 n); Pd: 0.994 Pa: 0.175 Exon 5 17338 17181 ( 158 n); score: 1.000 Intron 5 17180 16773 ( 408 n); Pd: 0.890 Pa: 0.997 Exon 6 16772 16702 ( 71 n); score: 1.000 PGS (17701 17485,17338 17181,16772 16702) SGN-E288832+ PGS (20303 20050,18482 18379,18021 17886,17716 17525) SGN-E318163+ 3-phase translation of AGS-2 (-strand): . . . . . . 20303 TTGACATGGCCATTACAACTCTTCCCTCCTCTCATCACCTCCATTTCTGCTTCTTCTCTT L T W P L Q L F P P L I T S I S A S S L - H G H Y N S S L L S S P P F L L L L F D M A I T T L P S S H H L H F C F F S . . . . . . 20243 CATCATCTTCCAAATTCTCAATCACTACACAATTATGCCTAAATTTTCCCCCGAAGAATC H H L P N S Q S L H N Y A - I F P R R I I I F Q I L N H Y T I M P K F S P E E S S S S S K F S I T T Q L C L N F P P K N . . . . . . 20183 GTATTTCACTCGTCATTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCATCGTCGTCGC V F H S S F V L L L L R P L R H H R R R Y F T R H L F F F Y F A P S A I I V V A R I S L V I C S S S T S P P P P S S S S . . . . . . 20123 CCCAAGTCAGTGAACCCACTCCCACTGCTGAGTCCTGTGTCAATGCCGGCCTCGACCTCT P K S V N P L P L L S P V S M P A S T S P S Q - T H S H C - V L C Q C R P R P L P Q V S E P T P T A E S C V N A G L D L . . : . . . . 20063 TCTCTAAAGGACGG : GTGAAAGATGCTCTTGTGCTATTCGACACAGCACTTACTTTAAATC S L K D G : - K M L L C Y S T Q H L L - I L - R T : G E R C S C A I R H S T Y F K S F S K G R : V K D A L V L F D T A L T L N . . . . . . : 18436 CCAACCCTGAGGAGGCTCAAGCTGCATTTTATAACAAAGCATGTTGCCATGCCTACAG : GG P T L R R L K L H F I T K H V A M P T : G Q P - G G S S C I L - Q S M L P C L Q : G P N P E E A Q A A F Y N K A C C H A Y R : . . . . . . 18019 GGGAAGGAAAGAAAGCTGCTGAGTGTTTACGCACTGCTTTGAAAGAGTATAACCTTAAGT G K E R K L L S V Y A L L - K S I T L S G R K E S C - V F T H C F E R V - P - V G E G K K A A E C L R T A L K E Y N L K . . . . . . 17959 TTGGCACAATCTTAAATGATCCAGATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGG L A Q S - M I Q I W L P S E H C L N L R W H N L K - S R F G F L Q S I A - I - G F G T I L N D P D L A S F R A L P E F K . . : . . . . 17899 AACTACAGGAAGAG : GCTAGGTTAGGAGGGGAAGACATAGGTTACAGTTTCCGTAGAGACC N Y R K R : L G - E G K T - V T V S V E T T T G R : G - V R R G R H R L Q F P - R P E L Q E E : A R L G G E D I G Y S F R R D . . . . . . 17670 TTAAGCTCATCAGTGAGGTACAAGCACCGTTTAGGGGGGTCAGAAGATTCTTTTATGTGG L S S S V R Y K H R L G G S E D S F M W - A H Q - G T S T V - G G Q K I L L C G L K L I S E V Q A P F R G V R R F F Y V . . . . . . 17610 CATTCATTGCTGCTGCTGGAATTTCTACATTTTTCACTATACCCAGGTTAATCCGTGCAA H S L L L L E F L H F S L Y P G - S V Q I H C C C W N F Y I F H Y T Q V N P C N A F I A A A G I S T F F T I P R L I R A . . . . . . 17550 TTCAAGGTGGAGATGGTGCTCCTGATTTAGGGGCGACTGCAGGAAATGCTGCTATAAATG F K V E M V L L I - G R L Q E M L L - M S R W R W C S - F R G D C R K C C Y K C I Q G G D G A P D L G A T A G N A A I N . : . . . . . 17490 TCGCTG : GTATTGCTGTTTTTGTGGCTTTGTTGTTTTGGGACAACAAAAAAGAGGAGGAAC S L : V L L F L W L C C F G T T K K R R N R W : Y C C F C G F V V L G Q Q K R G G T V A : G I A V F V A L L F W D N K K E E E . . . . . . 17284 AGCTTGCACAAATATTGCGTGATGAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTG S L H K Y C V M K H Y Q G C L C A F Q L A C T N I A - - N T I K A A F A P F N - Q L A Q I L R D E T L S R L P L R L S T . . . . . : . 17224 ATAGGATTGTTGAACTCGTCCAGCTAAGAGACACCGTGAGGCCT : GTTATTTTGGCTGGAA I G L L N S S S - E T P - G L : L F W L E - D C - T R P A K R H R E A : C Y F G W K D R I V E L V Q L R D T V R P : V I L A G . . . . . . 16756 AAAAGGAGACAGTCTCTCTGGCTATGAGAAATGCTGAGAAATTCCGCACTGAGCT K R R Q S L W L - E M L R N S A L S K G D S L S G Y E K C - E I P H - A K K E T V S L A M R N A E K F R T E Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-4_AGS-2_PPS_1 (20301 20050,18482 18379,18021 17886,17716 17485,17338 17181,16772 16704) (frame '0'; 951 bp, 317 residues) 1 DMAITTLPSS HHLHFCFFSS SSSKFSITTQ LCLNFPPKNR ISLVICSSST SPPPPSSSSP 61 QVSEPTPTAE SCVNAGLDLF SKGRVKDALV LFDTALTLNP NPEEAQAAFY NKACCHAYRG 121 EGKKAAECLR TALKEYNLKF GTILNDPDLA SFRALPEFKE LQEEARLGGE DIGYSFRRDL 181 KLISEVQAPF RGVRRFFYVA FIAAAGISTF FTIPRLIRAI QGGDGAPDLG ATAGNAAINV 241 AGIAVFVALL FWDNKKEEEQ LAQILRDETL SRLPLRLSTD RIVELVQLRD TVRPVILAGK 301 KETVSLAMRN AEKFRTE PGL 5 (+ strand): 24389 30991 AGS-1 (24389 24412,24590 24636,27191 27275,30524 30613,30741 30991) SCR (e 1.000 d 0.978 a 0.916,e 1.000 d 0.987 a 0.998,e 1.000 d 0.656 a 0.996,e 1.000 d 0.940 a 0.995,e 1.000) Exon 1 24389 24412 ( 24 n); score: 1.000 Intron 1 24413 24589 ( 177 n); Pd: 0.978 Pa: 0.916 Exon 2 24590 24636 ( 47 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 Pa: 0.998 Exon 3 27191 27275 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 Pa: 0.996 Exon 4 30524 30613 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 Pa: 0.995 Exon 5 30741 30991 ( 251 n); score: 1.000 PGS (24389 24412,24590 24636,27191 27275,30524 30613,30741 30981) SGN-E298958+ PGS (24389 24412,24590 24636,27191 27275,30524 30613,30741 30968) SGN-E304713+ PGS (24395 24412,24590 24636,27191 27275,30524 30613,30741 30983) SGN-E242585+ PGS (24395 24412,24590 24636,27191 27275,30524 30613,30741 30982) SGN-E242586+ PGS (24395 24412,24590 24636,27191 27275,30524 30613,30741 30817) SGN-E241261+ PGS (24399 24412,24590 24636,27191 27275,30524 30613,30741 30981) SGN-E354446+ PGS (24399 24412,24590 24636,27191 27275,30524 30613,30741 30981) SGN-E356702+ PGS (24399 24412,24590 24636,27191 27275,30524 30613,30741 30980) SGN-E239491+ PGS (24399 24412,24590 24636,27191 27275,30524 30613,30741 30817) SGN-E231655+ PGS (24401 24412,24590 24636,27191 27275,30524 30613,30741 30946) SGN-E334870+ PGS (24597 24636,27191 27275,30524 30613,30741 30976) SGN-E283872+ PGS (27191 27275,30524 30613,30741 30826) SGN-E288157+ PGS (30524 30613,30741 30970) SGN-E223606- PGS (30748 30991) SGN-E347619+ 3-phase translation of AGS-1 (+strand): . . . : . . . 24389 CGCAGCTCATTCTAGAACAGTCAG : GTGATTTTGCAGAATCGAAGTCTTCGTCTCGAATAT R S S F - N S Q : V I L Q N R S L R L E Y A A H S R T V R : - F C R I E V F V S N I Q L I L E Q S : G D F A E S K S S S R I . . : . . . . 24626 CTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGTTGC L F A M : S D E E V V D P K A T L E V S C S L P : C R T R K L L T Q R R H - K - V A S L C H : V G R G S C - P K G D I R S K L . . . . : . . 27240 AAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAAGGT K P K C V R Q L K E Y Q : A C T K R I E G S L S V - G N - R S I R : H V L K G - K V Q A - V C K A T K G V S : G M Y - K D R R . . . . . . 30548 GATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATCGAC D E S G H K H C T G Q Y F D Y W H C I D M N Q G T N I A L D S I L I I G T A S T - - I R A Q T L H W T V F - L L A L H R . : . . . . . 30608 AAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTGATC K C : V A A K L F D H L K - Q G Y K L L I N V : L L R S C L T I S S N K D I S C - S Q M : C C C E V V - P S Q V T R I - V V D . . . . . . 30795 CCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCACTG P C N L S S F W L L N K S L P Y Y S S L L A I Y L L F G C - T S H Y H I I P H C P L Q F I F F L V V E Q V I T I L F L T . . . . . . 30855 TGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAACTAT C - R L V T L S I N L V A A W K I L N Y A E D L - P F Q S T W L L H G K F - T M V L K T C N P F N Q L G C C M E N F E L . . . . . . 30915 GCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTATTC A H L K K - L I N H T R G L N W T L L F H I L K S D - - I I L V G - I G P F Y S C T S - K V I N K S Y S W V E L D P F I . . 30975 GTTCGAATTATTGAGAA V R I I E F E L L R R S N Y - E Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-5_AGS-1_PPS_1 (24404 24412,24590 24636,27191 27275,30524 30613,30741 30773) (frame '1'; 261 bp, 87 residues) 1 NSQVILQNRS LRLEYLFAMS DEEVVDPKAT LEVSCKPKCV RQLKEYQACT KRIEGDESGH 61 KHCTGQYFDY WHCIDKCVAA KLFDHLK- AGS-2 (24398 24412,24578 24636,27191 27275,30524 30613,30741 30980) SCR (e 1.000 d 0.978 a 0.000,e 1.000 d 0.987 a 0.998,e 1.000 d 0.656 a 0.996,e 1.000 d 0.940 a 0.995,e 1.000) Exon 1 24398 24412 ( 15 n); score: 1.000 Intron 1 24413 24577 ( 165 n); Pd: 0.978 Pa: 0.000 Exon 2 24578 24636 ( 59 n); score: 1.000 Intron 2 24637 27190 (2554 n); Pd: 0.987 Pa: 0.998 Exon 3 27191 27275 ( 85 n); score: 1.000 Intron 3 27276 30523 (3248 n); Pd: 0.656 Pa: 0.996 Exon 4 30524 30613 ( 90 n); score: 1.000 Intron 4 30614 30740 ( 127 n); Pd: 0.940 Pa: 0.995 Exon 5 30741 30980 ( 240 n); score: 1.000 PGS (24398 24412,24578 24636,27191 27275,30524 30613,30741 30980) SGN-E373662- PGS (24399 24412,24578 24636,27191 27275,30524 30613,30741 30980) SGN-E373663+ 3-phase translation of AGS-2 (+strand): . . : . . . . 24398 TTCTAGAACAGTCAG : TTGCACTTGCAGGTGATTTTGCAGAATCGAAGTCTTCGTCTCGAA F - N S Q : L H L Q V I L Q N R S L R L E S R T V S : C T C R - F C R I E V F V S N L E Q S : V A L A G D F A E S K S S S R . . : . . . . 24623 TATCTCTTTGCCAT : GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACATTAGAAGTAAGT Y L F A M : S D E E V V D P K A T L E V S I S L P : C R T R K L L T Q R R H - K - V I S L C H : V G R G S C - P K G D I R S K . . . . : . . 27237 TGCAAGCCTAAGTGTGTAAGGCAACTAAAGGAGTATCAG : GCATGTACTAAAAGGATAGAA C K P K C V R Q L K E Y Q : A C T K R I E A S L S V - G N - R S I R : H V L K G - K L Q A - V C K A T K G V S : G M Y - K D R . . . . . . 30545 GGTGATGAATCAGGGCACAAACATTGCACTGGACAGTATTTTGATTATTGGCACTGCATC G D E S G H K H C T G Q Y F D Y W H C I V M N Q G T N I A L D S I L I I G T A S R - - I R A Q T L H W T V F - L L A L H . : . . . . . 30605 GACAAATGT : GTTGCTGCGAAGTTGTTTGACCATCTCAAGTAACAAGGATATAAGTTGTTG D K C : V A A K L F D H L K - Q G Y K L L T N V : L L R S C L T I S S N K D I S C - R Q M : C C C E V V - P S Q V T R I - V V . . . . . . 30792 ATCCCTTGCAATTTATCTTCTTTTTGGTTGTTGAACAAGTCATTACCATATTATTCCTCA I P C N L S S F W L L N K S L P Y Y S S S L A I Y L L F G C - T S H Y H I I P H D P L Q F I F F L V V E Q V I T I L F L . . . . . . 30852 CTGTGCTGAAGACTTGTAACCCTTTCAATCAACTTGGTTGCTGCATGGAAAATTTTGAAC L C - R L V T L S I N L V A A W K I L N C A E D L - P F Q S T W L L H G K F - T T V L K T C N P F N Q L G C C M E N F E . . . . . . 30912 TATGCACATCTTAAAAAGTGATTAATAAATCATACTCGTGGGTTGAATTGGACCCTTTTA Y A H L K K - L I N H T R G L N W T L L M H I L K S D - - I I L V G - I G P F Y L C T S - K V I N K S Y S W V E L D P F . 30972 TTCGTTCGA F V R S F I R S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-5_AGS-2_PPS_1 (24404 24412,24578 24636,27191 27275,30524 30613,30741 30773) (frame '1'; 273 bp, 91 residues) 1 NSQLHLQVIL QNRSLRLEYL FAMSDEEVVD PKATLEVSCK PKCVRQLKEY QACTKRIEGD 61 ESGHKHCTGQ YFDYWHCIDK CVAAKLFDHL K- PGL 6 (+ strand): 35978 37463 AGS-1 (35978 36062,37093 37182,37267 37463) SCR (e 1.000 d 0.828 a 0.999,e 1.000 d 0.994 a 0.998,e 0.995) Exon 1 35978 36062 ( 85 n); score: 1.000 Intron 1 36063 37092 (1030 n); Pd: 0.828 Pa: 0.999 Exon 2 37093 37182 ( 90 n); score: 1.000 Intron 2 37183 37266 ( 84 n); Pd: 0.994 Pa: 0.998 Exon 3 37267 37463 ( 197 n); score: 0.995 PGS (35978 36062,37093 37182,37267 37463) SGN-E288157+ PGS (35978 36062,37093 37182,37267 37370) SGN-E242585+ PGS (35978 36062,37093 37182,37267 37370) SGN-E242586+ PGS (35978 36062,37093 37182,37267 37370) SGN-E304713+ PGS (35978 36062,37093 37182,37267 37370) SGN-E373663+ PGS (35978 36062,37093 37182,37267 37370) SGN-E334870+ PGS (35978 36062,37093 37182,37267 37370) SGN-E298958+ PGS (35978 36062,37093 37182,37267 37370) SGN-E354446+ PGS (35978 36062,37093 37182,37267 37370) SGN-E356702+ PGS (35978 36062,37093 37182,37267 37370) SGN-E239491+ PGS (35978 36062,37093 37182,37267 37370) SGN-E283872+ PGS (35978 36062,37093 37182,37267 37370) SGN-E373662- PGS (35978 36062,37093 37182,37267 37343) SGN-E231655+ PGS (35978 36062,37093 37182,37267 37343) SGN-E241261+ PGS (36018 36062,37093 37182,37267 37370) SGN-E223606- 3-phase translation of AGS-1 (+strand): . . . . . . 35978 GTCGGACGAGGAAGTTGTTGACCCAAAGGCGACAATGGAAGTATCTTGCAAGCCTAAGTG V G R G S C - P K G D N G S I L Q A - V S D E E V V D P K A T M E V S C K P K C R T R K L L T Q R R Q W K Y L A S L S . . . : . . . 36038 TGTAAGGCAACTAAAGGATTATCAG : GCATGTACTAGAAGGATAGAAGGTGATGAATCAGG C K A T K G L S : G M Y - K D R R - - I R V R Q L K D Y Q : A C T R R I E G D E S G V - G N - R I I R : H V L E G - K V M N Q . . . . . . : 37128 GAGCAAGCATTGCACTGGACAGTATTTTGATTATTGGCAATGCATTGACAAATGT : GTTGC E Q A L H W T V F - L L A M H - Q M : C C S K H C T G Q Y F D Y W Q C I D K C : V A G A S I A L D S I L I I G N A L T N V : L . . . . . . 37272 CCCAAAGCTATTTGAAAAACTCAAGTAACATGGAGATAAGTGTTCATCCATTACGATTTT P K A I - K T Q V T W R - V F I H Y D F P K L F E K L K - H G D K C S S I T I L P Q S Y L K N S S N M E I S V H P L R F . . . . . . 37332 ATCTTGCTTTTTCATTGTTGAAGCCTGTGCTACAGACTTGCAATCCCTTCAATCAACTTA I L L F H C - S L C Y R L A I P S I N L S C F F I V E A C A T D L Q S L Q S T - Y L A F S L L K P V L Q T C N P F N Q L . . . . . . 37392 GTTGCCGCATGGAAAATTTTGTACTATGCACATTATTAAGAAGTGATTAATAAAGGATAC V A A W K I L Y Y A H Y - E V I N K G Y L P H G K F C T M H I I K K - L I K D T S C R M E N F V L C T L L R S D - - R I . . 37452 TTATGGGTTAAA L W V K Y G L L M G - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-6_AGS-1_PPS_1 (37112 37182,37267 37441) (frame '0'; 243 bp, 81 residues) 1 KVMNQGASIA LDSILIIGNA LTNVLPQSYL KNSSNMEISV HPLRFYLAFS LLKPVLQTCN 61 PFNQLSCRME NFVLCTLLRS D- PGL 7 (- strand): 42175 39655 AGS-1 (42056 41876,41284 41236,40317 39655) SCR (e 0.975 d 1.000 a 1.000,e 1.000 d 0.954 a 0.996,e 1.000) Exon 1 42056 41876 ( 181 n); score: 0.975 Intron 1 41875 41285 ( 591 n); Pd: 1.000 Pa: 1.000 Exon 2 41284 41236 ( 49 n); score: 1.000 Intron 2 41235 40318 ( 918 n); Pd: 0.954 Pa: 0.996 Exon 3 40317 39655 ( 663 n); score: 1.000 PGS (40161 39655) SGN-E203073- PGS (41911 41876,41284 41236,40317 39827) SGN-E308359+ PGS (42056 41876,41284 41236,40317 40038) SGN-E309720+ 3-phase translation of AGS-1 (-strand): . . . . . . 42056 TCTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCC S I I I L I Y Y S - N N G N Q S P W Y P L S - S - F I I L E I M A I K V H G I P Y H N P N L L F L K - W Q S K S M V S . . . . . . 41996 CTTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGA L V N C N H E S Y F L P Y - E G F G F - L S T A T M R V I S C L I E K D L D F E P C Q L Q P - E L F L A L L R R I W I L . . . . . . 41936 GTTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAA V C L C - Y G Q R R T Q E A P F P L T Q F V F V D M A K E E H K R H P F L S L N S L S L L I W P K K N T R G T L S S H S . : . . . . : . 41876 T : CCTTTTGCTCAAGTACCAGCATTTGAAGATGGAGACTTGAAGCTCTTTG : AATCAAGGGC : S F C S S T S I - R W R L E A L - : I K G : P F A Q V P A F E D G D L K L F : E S R A I : L L L K Y Q H L K M E T - S S L : N Q G . . . . . . 40307 AATCACTCAATACATTGCTCAGGTTTATGCTAGCAATGGCATTCAACTAATACTCCAAGA N H S I H C S G L C - Q W H S T N T P R I T Q Y I A Q V Y A S N G I Q L I L Q D Q S L N T L L R F M L A M A F N - Y S K . . . . . . 40247 TCCAATGAAAATGGCCATTATGTCAGTATGGATGGAAGTAGAAGGCCAAAAATTTGAACC S N E N G H Y V S M D G S R R P K I - T P M K M A I M S V W M E V E G Q K F E P I Q - K W P L C Q Y G W K - K A K N L N . . . . . . 40187 ACCAGCTTCAAAATTAACATGGGAGCTAGTCATAAAACCAATGATTGGCTTGGGCAGTAC T S F K I N M G A S H K T N D W L G Q Y P A S K L T W E L V I K P M I G L G S T H Q L Q N - H G S - S - N Q - L A W A V . . . . . . 40127 CGATGATGTTATTGTGAAGGAAAGTGAAGAACAATTGTCTAAGGTTCTTGACATCTACGA R - C Y C E G K - R T I V - G S - H L R D D V I V K E S E E Q L S K V L D I Y E P M M L L - R K V K N N C L R F L T S T . . . . . . 40067 AACTCGATTGACAGAGTCAAAATACTTGGGTGGCGACTCCTTTACACTTGTTGATTTGCA N S I D R V K I L G W R L L Y T C - F A T R L T E S K Y L G G D S F T L V D L H K L D - Q S Q N T W V A T P L H L L I C . . . . . . 40007 TCATATACCAAATATATACCATCTGATGAATACAAAAGCTAAGGCACTGTTTGATTCGCG S Y T K Y I P S D E Y K S - G T V - F A H I P N I Y H L M N T K A K A L F D S R I I Y Q I Y T I - - I Q K L R H C L I R . . . . . . 39947 CCCTCGTGTGAGTGTATGGTGTGCTGATATATTGGCTAGGCCAGCTTGGGTGAAGGGGTT P S C E C M V C - Y I G - A S L G E G V P R V S V W C A D I L A R P A W V K G L A L V - V Y G V L I Y W L G Q L G - R G . . . . . . 39887 GGAGAAGATGCAAAAATGAAAAAAAGTCGTGAATTAATGGATGATCATAATTCATATATA G E D A K M K K S R E L M D D H N S Y I E K M Q K - K K V V N - W M I I I H I Y W R R C K N E K K S - I N G - S - F I Y . . . . . . 39827 TGTTTTTGTTTTGAAGCATTTGTGTCTTAATATGTTGTGTTTCTTGTCTGAAGATGTTTG C F C F E A F V S - Y V V F L V - R C L V F V L K H L C L N M L C F L S E D V C M F L F - S I C V L I C C V S C L K M F . . . . . . 39767 TCTTGCAATACAATAAACAGTGATCTATATCTATGTGATTTTACTAATTGTACTGATGTA S C N T I N S D L Y L C D F T N C T D V L A I Q - T V I Y I Y V I L L I V L M - V L Q Y N K Q - S I S M - F Y - L Y - C . . . . . . 39707 AAATATGCTATGTTCCGGTCATTTATAAAATAATTGCGCGCTATATTTTTGTG K Y A M F R S F I K - L R A I F L N M L C S G H L - N N C A L Y F C K I C Y V P V I Y K I I A R Y I F V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-7_AGS-1_PPS_1 (42040 41876,41284 41236,40317 39869) (frame '2'; 660 bp, 220 residues) 1 FIILEIMAIK VHGIPLSTAT MRVISCLIEK DLDFEFVFVD MAKEEHKRHP FLSLNPFAQV 61 PAFEDGDLKL FESRAITQYI AQVYASNGIQ LILQDPMKMA IMSVWMEVEG QKFEPPASKL 121 TWELVIKPMI GLGSTDDVIV KESEEQLSKV LDIYETRLTE SKYLGGDSFT LVDLHHIPNI 181 YHLMNTKAKA LFDSRPRVSV WCADILARPA WVKGLEKMQK - AGS-2 (42175 41564) SCR (e 1.000) Exon 1 42175 41564 ( 612 n); score: 1.000 PGS (42175 41564) SGN-E250145+ 3-phase translation of AGS-2 (-strand): . . . . . . 42175 AAAGGTTTGCTTAGGATTCAAGACTTTTTGGATATATTGATTTTTTTAAGAATGATATCA K G L L R I Q D F L D I L I F L R M I S K V C L G F K T F W I Y - F F - E - Y Q R F A - D S R L F G Y I D F F K N D I . . . . . . 42115 AGAAAATTTTACCCTATATATACCCCTCCATATAACTTCATTTCATCAACTTGGAGCAAT R K F Y P I Y T P P Y N F I S S T W S N E N F T L Y I P L H I T S F H Q L G A I K K I L P Y I Y P S I - L H F I N L E Q . . . . . . 42055 CTATCATAATCCTAATTTATTATTCTTGAAATAATGGCAATCAAAGTCCATGGTATCCCC L S - S - F I I L E I M A I K V H G I P Y H N P N L L F L K - W Q S K S M V S P S I I I L I Y Y S - N N G N Q S P W Y P . . . . . . 41995 TTGTCAACTGCAACCATGAGAGTTATTTCTTGCCTTATTGAGAAGGATTTGGATTTTGAG L S T A T M R V I S C L I E K D L D F E C Q L Q P - E L F L A L L R R I W I L S L V N C N H E S Y F L P Y - E G F G F - . . . . . . 41935 TTTGTCTTTGTTGATATGGCCAAAGAAGAACACAAGAGGCACCCTTTCCTCTCACTCAAT F V F V D M A K E E H K R H P F L S L N L S L L I W P K K N T R G T L S S H S M V C L C - Y G Q R R T Q E A P F P L T Q . . . . . . 41875 GTAAGCATAAATAATTACTCCCTCTGTACAGCTACATAAATATTTAAGAATTGTTTGACC V S I N N Y S L C T A T - I F K N C L T - A - I I T P S V Q L H K Y L R I V - P C K H K - L L P L Y S Y I N I - E L F D . . . . . . 41815 ATAAGTTTCAAAAGTTCTTTTCTTTAAACATGGTGTCAAGTCAAATGGTGTCAAATAAAA I S F K S S F L - T W C Q V K W C Q I K - V S K V L F F K H G V K S N G V K - N H K F Q K F F S L N M V S S Q M V S N K . . . . . . 41755 TGGGACGGTTGAAGTACATTATTAGCATGTTTGATCAAGTTTTGGAGAAGCTAAAAGTAT W D G - S T L L A C L I K F W R S - K Y G T V E V H Y - H V - S S F G E A K S I M G R L K Y I I S M F D Q V L E K L K V . . . . . . 41695 TTCTTTTTAAATGTTTATTTTAGAAATTTGAGATGTTCAGTGTTTTTTAGTAGCAGCATA F F L N V Y F R N L R C S V F F S S S I S F - M F I L E I - D V Q C F L V A A - F L F K C L F - K F E M F S V F - - Q H . . . . . . 41635 AACTGAACTAAAAACACTTTTTTGAAACTTTGGTCAAACACAAATGTTGCAAAAACATTT N - T K N T F L K L W S N T N V A K T F T E L K T L F - N F G Q T Q M L Q K H L K L N - K H F F E T L V K H K C C K N I . . 41575 GTCATATTGATG V I L M S Y - C H I D Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-7_AGS-2_PPS_1 (42040 41837) (frame '1'; 201 bp, 67 residues) 1 FIILEIMAIK VHGIPLSTAT MRVISCLIEK DLDFEFVFVD MAKEEHKRHP FLSLNVSINN 61 YSLCTAT- 3-phase translation of AGS-2 (+strand): . . . . . . 41564 CATCAATATGACAAATGTTTTTGCAACATTTGTGTTTGACCAAAGTTTCAAAAAAGTGTT H Q Y D K C F C N I C V - P K F Q K S V I N M T N V F A T F V F D Q S F K K V F S I - Q M F L Q H L C L T K V S K K C . . . . . . 41624 TTTAGTTCAGTTTATGCTGCTACTAAAAAACACTGAACATCTCAAATTTCTAAAATAAAC F S S V Y A A T K K H - T S Q I S K I N L V Q F M L L L K N T E H L K F L K - T F - F S L C C Y - K T L N I S N F - N K . . . . . . 41684 ATTTAAAAAGAAATACTTTTAGCTTCTCCAAAACTTGATCAAACATGCTAATAATGTACT I - K E I L L A S P K L D Q T C - - C T F K K K Y F - L L Q N L I K H A N N V L H L K R N T F S F S K T - S N M L I M Y . . . . . . 41744 TCAACCGTCCCATTTTATTTGACACCATTTGACTTGACACCATGTTTAAAGAAAAGAACT S T V P F Y L T P F D L T P C L K K R T Q P S H F I - H H L T - H H V - R K E L F N R P I L F D T I - L D T M F K E K N . . . . . . 41804 TTTGAAACTTATGGTCAAACAATTCTTAAATATTTATGTAGCTGTACAGAGGGAGTAATT F E T Y G Q T I L K Y L C S C T E G V I L K L M V K Q F L N I Y V A V Q R E - L F - N L W S N N S - I F M - L Y R G S N . . . . . . 41864 ATTTATGCTTACATTGAGTGAGAGGAAAGGGTGCCTCTTGTGTTCTTCTTTGGCCATATC I Y A Y I E - E E R V P L V F F F G H I F M L T L S E R K G C L L C S S L A I S Y L C L H - V R G K G A S C V L L W P Y . . . . . . 41924 AACAAAGACAAACTCAAAATCCAAATCCTTCTCAATAAGGCAAGAAATAACTCTCATGGT N K D K L K I Q I L L N K A R N N S H G T K T N S K S K S F S I R Q E I T L M V Q Q R Q T Q N P N P S Q - G K K - L S W . . . . . . 41984 TGCAGTTGACAAGGGGATACCATGGACTTTGATTGCCATTATTTCAAGAATAATAAATTA C S - Q G D T M D F D C H Y F K N N K L A V D K G I P W T L I A I I S R I I N - L Q L T R G Y H G L - L P L F Q E - - I . . . . . . 42044 GGATTATGATAGATTGCTCCAAGTTGATGAAATGAAGTTATATGGAGGGGTATATATAGG G L - - I A P S - - N E V I W R G I Y R D Y D R L L Q V D E M K L Y G G V Y I G R I M I D C S K L M K - S Y M E G Y I - . . . . . . 42104 GTAAAATTTTCTTGATATCATTCTTAAAAAAATCAATATATCCAAAAAGTCTTGAATCCT V K F S - Y H S - K N Q Y I Q K V L N P - N F L D I I L K K I N I S K K S - I L G K I F L I S F L K K S I Y P K S L E S . . 42164 AAGCAAACCTTT K Q T F S K P - A N L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 8 (- strand): 48236 43210 AGS-1 (45488 45311,45194 45063,44984 44863,44742 44651,44581 44490,43282 43210) SCR (e 1.000 d 0.933 a 0.823,e 1.000 d 0.829 a 0.994,e 1.000 d 0.900 a 0.982,e 1.000 d 0.275 a 0.953,e 1.000 d 0.987 a 0.999,e 0.911) Exon 1 45488 45311 ( 178 n); score: 1.000 Intron 1 45310 45195 ( 116 n); Pd: 0.933 Pa: 0.823 Exon 2 45194 45063 ( 132 n); score: 1.000 Intron 2 45062 44985 ( 78 n); Pd: 0.829 Pa: 0.994 Exon 3 44984 44863 ( 122 n); score: 1.000 Intron 3 44862 44743 ( 120 n); Pd: 0.900 Pa: 0.982 Exon 4 44742 44651 ( 92 n); score: 1.000 Intron 4 44650 44582 ( 69 n); Pd: 0.275 Pa: 0.953 Exon 5 44581 44490 ( 92 n); score: 1.000 Intron 5 44489 43283 (1207 n); Pd: 0.987 Pa: 0.999 Exon 6 43282 43210 ( 73 n); score: 0.911 PGS (45487 45311,45194 45063,44984 44863,44742 44651,44581 44490,43282 43210) SGN-E262885+ PGS (45474 45311,45194 45063,44984 44863,44742 44651,44581 44502) SGN-E551085+ PGS (45488 45311,45194 45063,44984 44863,44742 44651,44581 44555) SGN-E251477+ PGS (45488 45311,45194 45063,44984 44863,44742 44660) SGN-E260051+ 3-phase translation of AGS-1 (-strand): . . . . . . 45488 AAATATAGAGTCACTGGATGACTTATTGGAGAATTATGGTGGAAATGAAGTACAACAGTT K Y R V T G - L I G E L W W K - S T T V N I E S L D D L L E N Y G G N E V Q Q F I - S H W M T Y W R I M V E M K Y N S . . . . . . 45428 CGAGGAGAATTTGGTCTCATCTGAAGTAGCAGTTGTACATGATCCAAATGAGCATTCCAT R G E F G L I - S S S C T - S K - A F H E E N L V S S E V A V V H D P N E H S M S R R I W S H L K - Q L Y M I Q M S I P . . . . . . : 45368 GGCTGAGGTTCTGGATCACTTTCAGCATACAAGTTCCTCACGAGGCAATCCTAAAATG : CT G - G S G S L S A Y K F L T R Q S - N : A A E V L D H F Q H T S S S R G N P K M : L W L R F W I T F S I Q V P H E A I L K C : . . . . . . 45192 GCAAACAAAAATACCTGGATCACGGTTCTTACGGAAGAGAAACTTATTGCTGCTTGGTGA A N K N T W I T V L T E E K L I A A W - Q T K I P G S R F L R K R N L L L L G D C K Q K Y L D H G S Y G R E T Y C C L V . . . . . . 45132 CAGAAACATGAGCAATGGCGAACAACCTGAGGAACTAGATAGTGATCCATCTAGTGATGA Q K H E Q W R T T - G T R - - S I - - - R N M S N G E Q P E E L D S D P S S D E T E T - A M A N N L R N - I V I H L V M . : . . . . . 45072 GGATGTAAAT : GAAGTTCCCCAGATTCTGAAGTCTGCTATACCTCAGAGGACCATGGCTGA G C K : - S S P D S E V C Y T S E D H G - D V N : E V P Q I L K S A I P Q R T M A D R M - M : K F P R F - S L L Y L R G P W L . . . . . . 44934 CCAATTTCATCTAGCGTTAGGAGCTGTATCCACAAATGAGAGGCTATGTATTGCAAGGCC P I S S S V R S C I H K - E A M Y C K A Q F H L A L G A V S T N E R L C I A R P T N F I - R - E L Y P Q M R G Y V L Q G . . : . . . . 44874 TAAGCAATTTGG : TTTATCTGGAAGGTTGCAGCACGTGATGCAATGTGAAAAGGACAGAGA - A I W : F I W K V A A R D A M - K G Q R K Q F G : L S G R L Q H V M Q C E K D R D L S N L : V Y L E G C S T - C N V K R T E . . . . . : . 44694 TACATATTTTTTGGAGAAGTCACAAACACATGCTGCTTCAAGTG : GTGCAGAAAGCTTCAT Y I F F G E V T N T C C F K W : C R K L H T Y F L E K S Q T H A A S S : G A E S F I I H I F W R S H K H M L L Q V : V Q K A S . . . . . . 44565 TGATGTGAGAATTTTGTCAAGTTCTTTGGAGGCCAAGCTGACTGTTTGTTTTTGTGCTTT - C E N F V K F F G G Q A D C L F L C F D V R I L S S S L E A K L T V C F C A L L M - E F C Q V L W R P S - L F V F V L . . : . . . . 44505 ACATGGAGATGAAGAG : GGTTCTGAGTGCCTGAGCAATCCTCGAGAAAGGAAGGGTACTGG T W R - R : G F - V P E Q S S R K E G Y W H G D E E : G S E C L S N P R E R K G T G Y M E M K R : V L S A - A I L E K G R V L . . . 43238 TAGAAGGGAGTTTACTATCATTTTTAACT - K G V Y Y H F - R R E F T I I F N V E G S L L S F L T Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-8_AGS-1_PPS_1 (45487 45311,45194 45063,44984 44863,44742 44651,44581 44490,43282 43211) (frame '2'; 687 bp, 229 residues) 1 NIESLDDLLE NYGGNEVQQF EENLVSSEVA VVHDPNEHSM AEVLDHFQHT SSSRGNPKML 61 QTKIPGSRFL RKRNLLLLGD RNMSNGEQPE ELDSDPSSDE DVNEVPQILK SAIPQRTMAD 121 QFHLALGAVS TNERLCIARP KQFGLSGRLQ HVMQCEKDRD TYFLEKSQTH AASSGAESFI 181 DVRILSSSLE AKLTVCFCAL HGDEEGSECL SNPRERKGTG RREFTIIFN AGS-2 (48236 48152,47976 47946,47838 47777,47322 47283,47172 47117,46477 46262,46156 46003,45633 45511) SCR (e 0.965 d 0.870 a 0.950,e 1.000 d 0.582 a 0.995,e 1.000 d 0.998 a 0.978,e 1.000 d 0.899 a 0.954,e 1.000 d 0.998 a 0.011,e 0.995 d 0.996 a 0.949,e 1.000 d 0.998 a 0.971,e 1.000) Exon 1 48236 48152 ( 85 n); score: 0.965 Intron 1 48151 47977 ( 175 n); Pd: 0.870 Pa: 0.950 Exon 2 47976 47946 ( 31 n); score: 1.000 Intron 2 47945 47839 ( 107 n); Pd: 0.582 Pa: 0.995 Exon 3 47838 47777 ( 62 n); score: 1.000 Intron 3 47776 47323 ( 454 n); Pd: 0.998 Pa: 0.978 Exon 4 47322 47283 ( 40 n); score: 1.000 Intron 4 47282 47173 ( 110 n); Pd: 0.899 Pa: 0.954 Exon 5 47172 47117 ( 56 n); score: 1.000 Intron 5 47116 46478 ( 639 n); Pd: 0.998 Pa: 0.011 Exon 6 46477 46262 ( 216 n); score: 0.995 Intron 6 46261 46157 ( 105 n); Pd: 0.996 Pa: 0.949 Exon 7 46156 46003 ( 154 n); score: 1.000 Intron 7 46002 45634 ( 369 n); Pd: 0.998 Pa: 0.971 Exon 8 45633 45511 ( 123 n); score: 1.000 PGS (46446 46262,46156 46003,45633 45511) SGN-E271203+ PGS (48236 48152,47976 47946,47838 47777,47322 47283,47172 47117,46477 46262) SGN-E249136+ 3-phase translation of AGS-2 (-strand): . . . . . . 48236 CCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTC P N - L R K I A S L L V T S Y G R E R F P I S S A K L R L C L L P A M E E K G S Q L A P Q N C V S A C Y Q L W K R K V . . . : . . . : 48176 AGCTGCTAGTAGAGTATTTCTTCAG : GAAAAGGAAGATTCGAACCAGAGTTTTTCCG : AAGA S C - - S I S S : G K G R F E P E F F R : R A A S R V F L Q : E K E D S N Q S F S : E E Q L L V E Y F F R : K R K I R T R V F P : K . . . . . . : 47834 GGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAG : GG G R Y G R - R M D D K - Q L F L R K Q : G E D M D D D E W M T N D N C S L E N K : G R K I W T M T N G - Q M T I V P - K T R : . . . . : . . 47320 AGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAG : ATGTCAAAAGACTTCATCATTC R F R S P F P A - T A H R : C Q K T S S F G L G V L S Q L E R L T : D V K R L H H S E V - E S F P S L N G S Q : M S K D F I I . . . . : . . 47150 AACCGATACAGTGAACTCTGATCAGCTGGTACAG : AGGCGGACAGGTTTATGCGAAGAAGA N R Y S E L - S A G T : E A D R F M R R R T D T V N S D Q L V Q : R R T G L C E E D Q P I Q - T L I S W Y R : G G Q V Y A K K . . . . . . 46451 TGACGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCA - R - S S F V - E S G W - P D Q Q K - S D V E V P L F K S Q D G S L I N K N D Q M T L K F L C L R V R M V A - S T K M I . . . . . . 46391 GGATGGTAGCTTCATCAACAAAAATGATCATTGGAAGGCGTTGTCCTGCTCCTTAGATGA G W - L H Q Q K - S L E G V V L L L R - D G S F I N K N D H W K A L S C S L D D R M V A S S T K M I I G R R C P A P - M . . . . . . 46331 TGAATTTTGTCACGTCACTAGAATTACATCCACTTGTAATTCAGAAGAGGAAATTATGTC - I L S R H - N Y I H L - F R R G N Y V E F C H V T R I T S T C N S E E E I M S M N F V T S L E L H P L V I Q K R K L C . : . . . . . 46271 TGATGATGAG : ATGAGGCCTTCTACTGATGGAAAATTCAAAAGAGATGGTAAAAGTACAAT - - - : D E A F Y - W K I Q K R W - K Y N D D E : M R P S T D G K F K R D G K S T M L M M R : - G L L L M E N S K E M V K V Q . . . . . . 46106 GCTTAAAGTAAGCGCAGATTGCAAATCAGGAGCTTTCTTCAATAAAGATGCTGGGTGTTC A - S K R R L Q I R S F L Q - R C W V F L K V S A D C K S G A F F N K D A G C S C L K - A Q I A N Q E L S S I K M L G V . . . . . : . 46046 ATCGGTATACGGGGCCTCATCAAAATTGAACAGATCATCTAAAG : GAAGCCCGGGCAAATC I G I R G L I K I E Q I I - R : K P G Q I S V Y G A S S K L N R S S K : G S P G K S H R Y T G P H Q N - T D H L K : E A R A N . . . . . . 45617 TAAGGCCAAATTTTTGTTCCAATCCCGGCCACAGAAGAAAGACTATGCTTTGGTTGTCCA - G Q I F V P I P A T E E R L C F G C P K A K F L F Q S R P Q K K D Y A L V V H L R P N F C S N P G H R R K T M L W L S . . . . . 45557 TGATAGTTGTGAAACCTGCATGCCCTTATCTGTGCTTCCACTAAATG - - L - N L H A L I C A S T K D S C E T C M P L S V L P L N M I V V K P A C P Y L C F H - M Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-8_AGS-2_PPS_1 (48235 48152,47976 47946,47838 47777,47322 47283,47172 47117,46477 46262,46156 46003,45633 45512) (frame '2'; 765 bp, 255 residues) 1 PISSAKLRLC LLPAMEEKGS AASRVFLQEK EDSNQSFSEE EDMDDDEWMT NDNCSLENKG 61 GLGVLSQLER LTDVKRLHHS TDTVNSDQLV QRRTGLCEED DVEVPLFKSQ DGSLINKNDQ 121 DGSFINKNDH WKALSCSLDD EFCHVTRITS TCNSEEEIMS DDEMRPSTDG KFKRDGKSTM 181 LKVSADCKSG AFFNKDAGCS SVYGASSKLN RSSKGSPGKS KAKFLFQSRP QKKDYALVVH 241 DSCETCMPLS VLPLN AGS-3 (48236 48152,47976 47946,47838 47777,47322 47283,47172 47123,46480 46386) SCR (e 1.000 d 0.870 a 0.950,e 1.000 d 0.582 a 0.995,e 1.000 d 0.998 a 0.978,e 1.000 d 0.899 a 0.954,e 1.000 d 0.970 a 0.216,e 0.989) Exon 1 48236 48152 ( 85 n); score: 1.000 Intron 1 48151 47977 ( 175 n); Pd: 0.870 Pa: 0.950 Exon 2 47976 47946 ( 31 n); score: 1.000 Intron 2 47945 47839 ( 107 n); Pd: 0.582 Pa: 0.995 Exon 3 47838 47777 ( 62 n); score: 1.000 Intron 3 47776 47323 ( 454 n); Pd: 0.998 Pa: 0.978 Exon 4 47322 47283 ( 40 n); score: 1.000 Intron 4 47282 47173 ( 110 n); Pd: 0.899 Pa: 0.954 Exon 5 47172 47123 ( 50 n); score: 1.000 Intron 5 47122 46481 ( 642 n); Pd: 0.970 Pa: 0.216 Exon 6 46480 46386 ( 95 n); score: 0.989 PGS (48236 48152,47976 47946,47838 47777,47322 47283,47172 47123,46480 46386) SGN-E203072+ 3-phase translation of AGS-3 (-strand): . . . . . . 48236 CCCAATTAGCTCCGCAAAATTGCGTCTCTGCTTGTTACCAGCTATGGAAGAGAAAGGTTC P N - L R K I A S L L V T S Y G R E R F P I S S A K L R L C L L P A M E E K G S Q L A P Q N C V S A C Y Q L W K R K V . . . : . . . : 48176 AGCTGCTAGTAGAGTATTTCTTCAG : GAAAAGGAAGATTCGAACCAGAGTTTTTCCG : AAGA S C - - S I S S : G K G R F E P E F F R : R A A S R V F L Q : E K E D S N Q S F S : E E Q L L V E Y F F R : K R K I R T R V F P : K . . . . . . : 47834 GGAAGATATGGACGATGACGAATGGATGACAAATGACAATTGTTCCTTAGAAAACAAG : GG G R Y G R - R M D D K - Q L F L R K Q : G E D M D D D E W M T N D N C S L E N K : G R K I W T M T N G - Q M T I V P - K T R : . . . . : . . 47320 AGGTTTAGGAGTCCTTTCCCAGCTTGAACGGCTCACAG : ATGTCAAAAGACTTCATCATTC R F R S P F P A - T A H R : C Q K T S S F G L G V L S Q L E R L T : D V K R L H H S E V - E S F P S L N G S Q : M S K D F I I . . . : . . . 47150 AACCGATACAGTGAACTCTGATCAGCTG : CAGAGGCGGACAGGTTTATGCGAAGAAGATGA N R Y S E L - S A : A E A D R F M R R R - T D T V N S D Q L : Q R R T G L C E E D D Q P I Q - T L I S C : R G G Q V Y A K K M . . . . . . 46448 CGTTGAAGTTCCTTTGTTTAAGAGTCAGGATGGTAGCCTGATCAACAAAAATGATCAGGA R - S S F V - E S G W - P D Q Q K - S G V E V P L F K S Q D G S L I N K N D Q D T L K F L C L R V R M V A - S T K M I R . 46388 TGG W M Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-8_AGS-3_PPS_1 (48235 48152,47976 47946,47838 47777,47322 47283,47172 47123,46480 46388) (frame '2'; 360 bp, 120 residues) 1 PISSAKLRLC LLPAMEEKGS AASRVFLQEK EDSNQSFSEE EDMDDDEWMT NDNCSLENKG 61 GLGVLSQLER LTDVKRLHHS TDTVNSDQLQ RRTGLCEEDD VEVPLFKSQD GSLINKNDQD PGL 9 (+ strand): 53844 54842 AGS-1 (53844 54157,54429 54842) SCR (e 1.000 d 1.000 a 0.972,e 0.942) Exon 1 53844 54157 ( 314 n); score: 1.000 Intron 1 54158 54428 ( 271 n); Pd: 1.000 Pa: 0.972 Exon 2 54429 54842 ( 414 n); score: 0.942 PGS (53844 54157,54429 54746) SGN-E392749+ PGS (53845 54157,54429 54572) SGN-E240536+ PGS (53845 54157,54429 54571) SGN-E240651+ PGS (53955 54157,54429 54842) SGN-E392855- 3-phase translation of AGS-1 (+strand): . . . . . . 53844 CTCATTTAGATGTAAAGCCAGATAATATTTATGTGAAAAATGGTGTATATAAGCTTGGTG L I - M - S Q I I F M - K M V Y I S L V S F R C K A R - Y L C E K W C I - A W - H L D V K P D N I Y V K N G V Y K L G . . . . . . 53904 ATTTTGGATGTGCAACTCTTCTTGATAAGAGCCAGCCAATTGAAGAGGGTGATGCACGTT I L D V Q L F L I R A S Q L K R V M H V F W M C N S S - - E P A N - R G - C T L D F G C A T L L D K S Q P I E E G D A R . . . . . . 53964 ATATGCCCCAAGAAATACTTAATGAGAACTATGATCATCTTGACAAAGTTGACATATTCT I C P K K Y L M R T M I I L T K L T Y S Y A P R N T - - E L - S S - Q S - H I L Y M P Q E I L N E N Y D H L D K V D I F . . . . . . 54024 CCTTGGGCGCTGCAATATATGAACTTATTAGAGGGTCTTCACTGCCAGAATCAGGGCCTC P W A L Q Y M N L L E G L H C Q N Q G L L G R C N I - T Y - R V F T A R I R A S S L G A A I Y E L I R G S S L P E S G P . . . . . . 54084 ATTTTCTAAACCTCAGGGAGGGGAAATTGCCTCTTCTTCCGGGTCACTCCTTGCAATTTC I F - T S G R G N C L F F R V T P C N F F S K P Q G G E I A S S S G S L L A I S H F L N L R E G K L P L L P G H S L Q F . . : . . . . 54144 AGAATCTACTCAAG : GCAATGATGGACCCAGATCCAACACGTCGTCCTTCTGCAAAAGGCG R I Y S R : Q - W T Q I Q H V V L L Q K A E S T Q : G N D G P R S N T S S F C K R R Q N L L K : A M M D P D P T R R P S A K G . . . . . . 54475 TTGTGGATAATCCAATCTTTGAAAGATGGCAAAGAAATTCCAACAAGTAGATATCCATGT L W I I Q S L K D G K E I P T S R Y P C C G - S N L - K M A K K F Q Q V D I H V V V D N P I F E R W Q R N S N K - I S M . . . . . . 54535 AAATCACTGTTTTCTGGGATTTGTCGATTGCTACTTTTGCCAAAGATCCAGAATTCAAAG K S L F S G I C R L L L L P K I Q N S K N H C F L G F V D C Y F C Q R S R I Q S - I T V F W D L S I A T F A K D P E F K . . . . . . 54595 CTGCAGTATCTCATGCAGCATTCTGGTGTTGACCTATAGCCATTTCTGTAAATAGAGATA L Q Y L M Q H S G V D L - P F L - I E I C S I S C S I L V L T Y S H F C K - R - A A V S H A A F W C - P I A I S V N R D . . . . . . 54655 AAGCTTCATGCACCAAATTTTCCCATTTTGATGGTGCCACTTTTGCCAAATATTATATCA K L H A P N F P I L M V P L L P N I I S S F M H Q I F P F - W C H F C Q I L Y Q K A S C T K F S H F D G A T F A K Y Y I . . . . . . 54715 AGAATGTAATGTTGTATCCTAATTGACCTGCAAACTGTGGTTTGTATGTCAAAATATGGT R M - C C I L I D L Q T V V C M S K Y G E C N V V S - L T C K L W F V C Q N M V K N V M L Y P N - P A N C G L Y V K I W . . . . . . 54775 ATTTGGTGGCTTTTAAGCTGATTAATTCAGTATTGGTTTTTGGTTTTGGTAACTCAGATT I W W L L S - L I Q Y W F L V L V T Q I F G G F - A D - F S I G F W F W - L R F Y L V A F K L I N S V L V F G F G N S D . 54835 TGTATTAA C I V L L Y - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-9_AGS-1_PPS_1 (53846 54157,54429 54524) (frame '0'; 405 bp, 135 residues) 1 HLDVKPDNIY VKNGVYKLGD FGCATLLDKS QPIEEGDARY MPQEILNENY DHLDKVDIFS 61 LGAAIYELIR GSSLPESGPH FLNLREGKLP LLPGHSLQFQ NLLKAMMDPD PTRRPSAKGV 121 VDNPIFERWQ RNSNK- PGL 10 (- strand): 56449 55536 AGS-1 (56449 56327,55914 55725,55593 55536) SCR (e 0.886 d 0.000 a 0.000,e 0.874 d 0.453 a 0.000,e 0.810) Exon 1 56449 56327 ( 123 n); score: 0.886 Intron 1 56326 55915 ( 412 n); Pd: 0.000 Pa: 0.000 Exon 2 55914 55725 ( 190 n); score: 0.874 Intron 2 55724 55594 ( 131 n); Pd: 0.453 Pa: 0.000 Exon 3 55593 55536 ( 58 n); score: 0.810 PGS (56449 56327,55914 55725,55593 55536) SGN-E230552+ 3-phase translation of AGS-1 (-strand): . . . . . . 56449 GGTAAATTATGTGGCTAAGCAAACTTATACTATTTAATTACTCATCATAGTTATAGTTTA G K L C G - A N L Y Y L I T H H S Y S L V N Y V A K Q T Y T I - L L I I V I V Y - I M W L S K L I L F N Y S S - L - F . . . . . . 56389 CTATAATTACCACCCACGACTAACATTATACATTAATTATATGGGCTGACCTCGAGTTTG L - L P P T T N I I H - L Y G L T S S L Y N Y H P R L T L Y I N Y M G - P R V C T I I T T H D - H Y T L I I W A D L E F . : . . . . . 56329 TAT : TATATATATAATTCGCCAAGATATACAAATACATATGTATAATATACAATTATTTAA Y : Y I Y N S P R Y T N T Y V - Y T I I - I : I Y I I R Q D I Q I H M Y N I Q L F N V : L Y I - F A K I Y K Y I C I I Y N Y L . . . . . . 55857 CCTACATACATATACAATTTGCCTCTCTCCCACTCTCTGCCCTCTCTCACTCGCATCTCT P T Y I Y N L P L S H S L P S L T R I S L H T Y T I C L S P T L C P L S L A S L T Y I H I Q F A S L P L S A L S H S H L . . . . . . 55797 CCTCCCTCTCTCAATCTCGCTCATCTCTCTCCTCCCTCTCCTATTCTCGCTTGCCATATA P P S L N L A H L S P P S P I L A C H I L P L S I S L I S L L P L L F S L A I Y S S L S Q S R S S L S S L S Y S R L P Y . . : . . . . 55737 TACAAATGCATAT : ATACAATTATCTAATCAATATACTTATACAATTCACCTTTCTCCTAC Y K C I : Y T I I - S I Y L Y N S P F S Y T N A Y : I Q L S N Q Y T Y T I H L S P T I Q M H I : Y N Y L I N I L I Q F T F L L . . 55546 TCTTTTCCCCC S F P L F P L F S P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-10_AGS-1_PPS_1 (56340 56327,55914 55725,55593 55537) (frame '2'; 261 bp, 87 residues) 1 PRVCIIYIIR QDIQIHMYNI QLFNLHTYTI CLSPTLCPLS LASLLPLSIS LISLLPLLFS 61 LAIYTNAYIQ LSNQYTYTIH LSPTLFP >C09HBa0099P03.1-2-_PGL-10_AGS-1_PPS_2 (55903 55725,55593 55536) (frame '0'; 237 bp, 79 residues) 1 FAKIYKYICI IYNYLTYIHI QFASLPLSAL SHSHLSSLSQ SRSSLSSLSY SRLPYIQMHI 61 YNYLINILIQ FTFLLLFSP PGL 11 (+ strand): 60085 60449 AGS-1 (60085 60449) SCR (e 0.941) Exon 1 60085 60449 ( 365 n); score: 0.941 PGS (60085 60449) SGN-E373717- PGS (60086 60449) SGN-E373718+ 3-phase translation of AGS-1 (+strand): . . . . . . 60085 ATCAACTTTATAGATTGGTGTAATAAGAGAATTGTAGTGTTGGGAAACGCTTTTGCGAAA I N F I D W C N K R I V V L G N A F A K S T L - I G V I R E L - C W E T L L R K Q L Y R L V - - E N C S V G K R F C E . . . . . . 60145 ATTTTGTAATTGATTGAGTTTTGAGGTTTTTGATCTCGAACTCAATCAATCATACAAATT I L - L I E F - G F - S R T Q S I I Q I F C N - L S F E V F D L E L N Q S Y K F N F V I D - V L R F L I S N S I N H T N . . . . . . 60205 TCGTAGTTGATTGAGTTCTGAGGTGTTTTGATTTCGAATTCAATCAATCATTCATTTGCA S - L I E F - G V L I S N S I N H S F A R S - L S S E V F - F R I Q S I I H L H F V V D - V L R C F D F E F N Q S F I C . . . . . . 60265 TTTCGTTGGTGTCTCCCACCTACGTTTCTCTTCGTTTTTCTTCTCTTTTTTTAAGCAACC F R W C L P P T F L F V F L L F F - A T F V G V S H L R F S S F F F S F F K Q P I S L V S P T Y V S L R F S S L F L S N . . . . . . 60325 AATTCATTGGTGATTAAGTTTACATGTCAATGGAACTCAACCAATTTTAATTTTGCTTGA N S L V I K F T C Q W N S T N F N F A - I H W - L S L H V N G T Q P I L I L L D Q F I G D - V Y M S M E L N Q F - F C L . . . . . . 60385 TTTGATCAGCTTTTTTCAAAACAAAACAAAAAAAAATTAAAATCGTTTTCATAAATTAAA F D Q L F S K Q N K K K L K S F S - I K L I S F F Q N K T K K N - N R F H K L K I - S A F F K T K Q K K I K I V F I N - . 60445 AAAAA K K K K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 60449 TTTTTTTTAATTTATGAAAACGATTTTAATTTTTTTTTGTTTTGTTTTGAAAAAAGCTGA F F L I Y E N D F N F F L F C F E K S - F F - F M K T I L I F F C F V L K K A D F F N L - K R F - F F F V L F - K K L . . . . . . 60389 TCAAATCAAGCAAAATTAAAATTGGTTGAGTTCCATTGACATGTAAACTTAATCACCAAT S N Q A K L K L V E F H - H V N L I T N Q I K Q N - N W L S S I D M - T - S P M I K S S K I K I G - V P L T C K L N H Q . . . . . . 60329 GAATTGGTTGCTTAAAAAAAGAGAAGAAAAACGAAGAGAAACGTAGGTGGGAGACACCAA E L V A - K K R R K T K R N V G G R H Q N W L L K K R E E K R R E T - V G D T N - I G C L K K E K K N E E K R R W E T P . . . . . . 60269 CGAAATGCAAATGAATGATTGATTGAATTCGAAATCAAAACACCTCAGAACTCAATCAAC R N A N E - L I E F E I K T P Q N S I N E M Q M N D - L N S K S K H L R T Q S T T K C K - M I D - I R N Q N T S E L N Q . . . . . . 60209 TACGAAATTTGTATGATTGATTGAGTTCGAGATCAAAAACCTCAAAACTCAATCAATTAC Y E I C M I D - V R D Q K P Q N S I N Y T K F V - L I E F E I K N L K T Q S I T L R N L Y D - L S S R S K T S K L N Q L . . . . . . 60149 AAAATTTTCGCAAAAGCGTTTCCCAACACTACAATTCTCTTATTACACCAATCTATAAAG K I F A K A F P N T T I L L L H Q S I K K F S Q K R F P T L Q F S Y Y T N L - S Q N F R K S V S Q H Y N S L I T P I Y K . 60089 TTGAT L - V D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 12 (+ strand): 62221 63883 AGS-1 (62221 62456,62572 63883) SCR (e 0.992 d 0.962 a 0.996,e 0.966) Exon 1 62221 62456 ( 236 n); score: 0.992 Intron 1 62457 62571 ( 115 n); Pd: 0.962 Pa: 0.996 Exon 2 62572 63883 (1312 n); score: 0.966 PGS (62221 62456,62572 63124) SGN-E547294+ PGS (63072 63876) SGN-E547736- PGS (63090 63882) SGN-E547293- PGS (63587 63883) SGN-E546842+ PGS (63587 63883) SGN-E546841- 3-phase translation of AGS-1 (+strand): . . . . . . 62221 GTTTGTCATAGCTGTATTCGCAGCCATCATTGCAAGTCAAGCTTTGATTTCCGGGACATT V C H S C I R S H H C K S S F D F R D I F V I A V F A A I I A S Q A L I S G T F L S - L Y S Q P S L Q V K L - F P G H . . . . . . 62281 CGCTATAATCCAGCAATCTCTGGCTTTAGGATGCTTTCCTCGTGTTAAAATCGTGCATAC R Y N P A I S G F R M L S S C - N R A Y A I I Q Q S L A L G C F P R V K I V H T S L - S S N L W L - D A F L V L K S C I . . . . . . 62341 ATCAAAGAAACATCATGGACAAATCTACATTCCTGAAATCAATAACCTTCTCATGATCGC I K E T S W T N L H S - N Q - P S H D R S K K H H G Q I Y I P E I N N L L M I A H Q R N I M D K S T F L K S I T F S - S . . . . . . : 62401 TTGTGTTCTTACCACTATCGGATTCAAGACTACTGAAAAGCTTAGCAATGCTTATG : GAAT L C S Y H Y R I Q D Y - K A - Q C L W : N C V L T T I G F K T T E K L S N A Y : G I L V F L P L S D S R L L K S L A M L M : E . . . . . . 62576 AGCAGTGGTGTTTGTGATGTTCCTAACATCGTGCTTCCTCATACTAGTCATGATCTTGAT S S G V C D V P N I V L P H T S H D L D A V V F V M F L T S C F L I L V M I L I - Q W C L - C S - H R A S S Y - S - S - . . . . . . 62636 ATGGAAAACCAACATTCTTCTTATTATCGTCTATATTCTAATCATTGTTTCGGTTGAGCT M E N Q H S S Y Y R L Y S N H C F G - A W K T N I L L I I V Y I L I I V S V E L Y G K P T F F L L S S I F - S L F R L S . . . . . . 62696 TGTATACCTAAGCGCAGTCCTTTACAAGTTTGAACAAGGTGGTTACCTCCCTGTGGCTTT C I P K R S P L Q V - T R W L P P C G F V Y L S A V L Y K F E Q G G Y L P V A L L Y T - A Q S F T S L N K V V T S L W L . . . . . . 62756 AGCTCTGTTCCTAATGTTTATCATGTACGTATGGAACTATGTGTACCGTAAGAAGTATCA S S V P N V Y H V R M E L C V P - E V S A L F L M F I M Y V W N Y V Y R K K Y H - L C S - C L S C T Y G T M C T V R S I . . . . . . 62816 CTACGAGCTAGAACACAAGATCTCTCCCGAAAAAGTTAAAGAAACATTGGATGCAACCAG L R A R T Q D L S R K S - R N I G C N Q Y E L E H K I S P E K V K E T L D A T S T T S - N T R S L P K K L K K H W M Q P . . . . . . 62876 TTCACATCGCCTTCCAGGTCTTGCCATTTTCTACTCTGAACTAGTCCACGGAATCCCCCC F T S P S R S C H F L L - T S P R N P P S H R L P G L A I F Y S E L V H G I P P V H I A F Q V L P F S T L N - S T E S P . . . . . . 62936 AATCTTCAAGCATTATGTTGAGAATGTACCTGCTTTACACTCTGTCCTCGTGTTCGCTTC N L Q A L C - E C T C F T L C P R V R F I F K H Y V E N V P A L H S V L V F A S Q S S S I M L R M Y L L Y T L S S C S L . . . . . . 62996 TGTCAAATCACTTCCCATAAGCAAAGTTCCACTAGAAGAAAGGTTCCTCTTCAGAAGGGT C Q I T S H K Q S S T R R K V P L Q K G V K S L P I S K V P L E E R F L F R R V L S N H F P - A K F H - K K G S S S E G . . . . . . 63056 GAAACCATATGACCTCTATGTGTTCCGTTGTGTGATACGTTATGGATACAATGAAATGCG E T I - P L C V P L C D T L W I Q - N A K P Y D L Y V F R C V I R Y G Y N E M R - N H M T S M C S V V - Y V M D T M K C . . . . . . 63116 CAATGAGGAAGAGCCTATCGAGAAGTTATTGGTAGAAAGGCTAAAGAACTACATCAAGGA Q - G R A Y R E V I G R K A K E L H Q G N E E E P I E K L L V E R L K N Y I K E A M R K S L S R S Y W - K G - R T T S R . . . . . . 63176 AGATTACATGTTCTCAGTTGCAGCAAATGGAGACAATCAAGGAGAAACTGCTTCCTTGAT R L H V L S C S K W R Q S R R N C F L D D Y M F S V A A N G D N Q G E T A S L I K I T C S Q L Q Q M E T I K E K L L P - . . . . . . 63236 TGAGAAAGACGTCGAAGTACTTGAGAGAGCTTCCAACATGGGAGTGGTTCATTTGGTTGG - E R R R S T - E S F Q H G S G S F G W E K D V E V L E R A S N M G V V H L V G L R K T S K Y L R E L P T W E W F I W L . . . . . . 63296 AGAACAAGACGTTGTCGCGTGCAAGGGGTCTGGTGTAACCAAAAGAATGGTGATCAACTA R T R R C R V Q G V W C N Q K N G D Q L E Q D V V A C K G S G V T K R M V I N Y E N K T L S R A R G L V - P K E W - S T . . . . . . 63356 CGCATACAATTTCCTCAAGAGGAACTTAAGACAGAGTAGTAACAAAGTATTCGATATCCC R I Q F P Q E E L K T E - - Q S I R Y P A Y N F L K R N L R Q S S N K V F D I P T H T I S S R G T - D R V V T K Y S I S . . . . . . 63416 AACGAAGCGAATGCTCAAAGTTGGAATGACATGTGAGCTTTAGGGTGATTATTTTCTCTA N E A N A Q S W N D M - A L G - L F S L T K R M L K V G M T C E L - G D Y F L - Q R S E C S K L E - H V S F R V I I F S . . . . . . 63476 AAAAAAAATTGTAAGGTTTAAAATAAATGTGCATAGAGTTGAAGGGAACAAGGGAGAAGG K K N C K V - N K C A - S - R E Q G R R K K I V R F K I N V H R V E G N K G E G K K K L - G L K - M C I E L K G T R E K . . . . . . 63536 CACCATATATGTTTCAACTTCCATCATCAAAAGGTGCTTGCACAAGAAAAAATAATGTTC H H I C F N F H H Q K V L A Q E K I M F T I Y V S T S I I K R C L H K K K - C S A P Y M F Q L P S S K G A C T R K N N V . . . . . . 63596 TTTTTGTTAATTTCTTAGTTTTCAATTTGTTTGTTTGTTTGGATTTTGTATGAGATAAGC F L L I S - F S I C L F V W I L Y E I S F C - F L S F Q F V C L F G F C M R - A L F V N F L V F N L F V C L D F V - D K . . . . . . 63656 TAAGCTAAGCCTGATTTTGTAAGAGAATAAGCTAAGTATTTGTATTTTGTTTTTTTCTTG - A K P D F V R E - A K Y L Y F V F F L K L S L I L - E N K L S I C I L F F S C L S - A - F C K R I S - V F V F C F F L . . . . . . 63716 TTTCAAAGAAAAGAGAAGATCAAGATATGTCTAGATAAAAAAACAACATAGGTGTAGTTG F Q R K E K I K I C L D K K T T - V - L F K E K R R S R Y V - I K K Q H R C S C V S K K R E D Q D M S R - K N N I G V V . . . . . . 63776 TTTTTGACTAGCAAAACATTTTTGTTTTTACCTTGTAATATCTTGTAAAAGATTGTCAGT F L T S K T F L F L P C N I L - K I V S F - L A K H F C F Y L V I S C K R L S V V F D - Q N I F V F T L - Y L V K D C Q . . . . . 63836 TCATACATAATAATAATAATTAATCTAAGAATAAATAGTTTATAGAAA S Y I I I I I N L R I N S L - K H T - - - - L I - E - I V Y R F I H N N N N - S K N K - F I E Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-12_AGS-1_PPS_1 (62222 62456,62572 63458) (frame '2'; 1119 bp, 373 residues) 1 FVIAVFAAII ASQALISGTF AIIQQSLALG CFPRVKIVHT SKKHHGQIYI PEINNLLMIA 61 CVLTTIGFKT TEKLSNAYGI AVVFVMFLTS CFLILVMILI WKTNILLIIV YILIIVSVEL 121 VYLSAVLYKF EQGGYLPVAL ALFLMFIMYV WNYVYRKKYH YELEHKISPE KVKETLDATS 181 SHRLPGLAIF YSELVHGIPP IFKHYVENVP ALHSVLVFAS VKSLPISKVP LEERFLFRRV 241 KPYDLYVFRC VIRYGYNEMR NEEEPIEKLL VERLKNYIKE DYMFSVAANG DNQGETASLI 301 EKDVEVLERA SNMGVVHLVG EQDVVACKGS GVTKRMVINY AYNFLKRNLR QSSNKVFDIP 361 TKRMLKVGMT CEL- PGL 13 (+ strand): 70647 71891 AGS-1 (70647 71891) SCR (e 0.967) Exon 1 70647 71891 (1245 n); score: 0.967 PGS (70647 71127) SGN-E208613- PGS (70795 71203) SGN-E289962- PGS (70935 71608) SGN-E391540- PGS (70979 71561) SGN-E267707- PGS (71055 71608) SGN-E205808- PGS (71152 71605) SGN-E202657- PGS (71216 71891) SGN-E273497+ PGS (71216 71618) SGN-E273387+ 3-phase translation of AGS-1 (+strand): . . . . . . 70647 TAAATATTATGCATCTGCGTAATCAATCAATTTTGTCTTGGATTCCTCGGGATAGAATAA - I L C I C V I N Q F C L G F L G I E - K Y Y A S A - S I N F V L D S S G - N K N I M H L R N Q S I L S W I P R D R I . . . . . . 70707 ACTCATAACTATGGTCCTTCGAGGATATTCAATCATGTGCTCAACACCATTTCAATGTCC T H N Y G P S R I F N H V L N T I S M S L I T M V L R G Y S I M C S T P F Q C P N S - L W S F E D I Q S C A Q H H F N V . . . . . . 70767 TTTTATCGGGGAGAAACTGAATCTTGCCAGTAAATTTACTGCAAAACAAATATCTGGTCA F Y R G E T E S C Q - I Y C K T N I W S F I G E K L N L A S K F T A K Q I S G Q L L S G R N - I L P V N L L Q N K Y L V . . . . . . 70827 AATATTGTTAGTAAGATGCACTAGTGCCCTGATTGCACCAAGATAGAGTTTCATCACCAA N I V S K M H - C P D C T K I E F H H Q I L L V R C T S A L I A P R - S F I T K K Y C - - D A L V P - L H Q D R V S S P . . . . . . 70887 GAAACTGTTCATCCTTCTTTTGAGATCAAACTGAATCATCATTTATGTCAAGTGATCTCA E T V H P S F E I K L N H H L C Q V I S K L F I L L L R S N - I I I Y V K - S H R N C S S F F - D Q T E S S F M S S D L . . . . . . 70947 TAATCATTGGGGTACTCAATGAATGCGAGATATCCACATAAAATTGCATCAAAATTTTTC - S L G Y S M N A R Y P H K I A S K F F N H W G T Q - M R D I H I K L H Q N F S I I I G V L N E C E I S T - N C I K I F . . . . . . 71007 AGTGTATGTGCACTGTTAGACAAATATTTTATTTGTCAAATTAACAATCTGTAGGTCTAG S V C A L L D K Y F I C Q I N N L - V - V Y V H C - T N I L F V K L T I C R S R Q C M C T V R Q I F Y L S N - Q S V G L . . . . . . 71067 ACAAAATTTTGTCTTACCAAGACCTTTTCATAAAAATACAAGGAAAATTAGGGTCATTCT T K F C L T K T F S - K Y K E N - G H S Q N F V L P R P F H K N T R K I R V I L D K I L S Y Q D L F I K I Q G K L G S F . . . . . . 71127 TTTGTACCCTTTTTCTTCCTTGACTATTTCAATCCATATAAGGATTCTTGAAGCTTTATT F V P F F F L D Y F N P Y K D S - S F I L Y P F S S L T I S I H I R I L E A L L F C T L F L P - L F Q S I - G F L K L Y . . . . . . 71187 GGAAAAGTTTCTTTCAAACTCTTATATGCTTCAGACACCTCGATTGTTTCAAGAATTTTC G K V S F K L L Y A S D T S I V S R I F E K F L S N S Y M L Q T P R L F Q E F S W K S F F Q T L I C F R H L D C F K N F . . . . . . 71247 ATATAACCTTCATTGTCTAGCTAGACATTACAATTATTCATTTACATGCATTCAAGTTTT I - P S L S S - T L Q L F I Y M H S S F Y N L H C L A R H Y N Y S F T C I Q V F H I T F I V - L D I T I I H L H A F K F . . . . . . 71307 CATATGTTGCCAGATCAAAACAAACCTCATTTCATCCACCAAAGGAGAAAACATCTCCAC H M L P D Q N K P H F I H Q R R K H L H I C C Q I K T N L I S S T K G E N I S T S Y V A R S K Q T S F H P P K E K T S P . . . . . . 71367 TAATGTCAGGATTTTTGCGATAAACCTTTATGCCCCAAGGCACAAACCGTATTTGATATC - C Q D F C D K P L C P K A Q T V F D I N V R I F A I N L Y A P R H K P Y L I S L M S G F L R - T F M P Q G T N R I - Y . . . . . . 71427 TTACGGTTATACTATCGCATAATAATTTATTTGTACCCCACTGACATTATATCTTGATTT L R L Y Y R I I I Y L Y P T D I I S - F Y G Y T I A - - F I C T P L T L Y L D L L T V I L S H N N L F V P H - H Y I L I . . . . . . 71487 ATGGACTATCAGTCCAAAATGTCACTTTTCTAAGTGAAACAAAATATAATTGAATTGTGC M D Y Q S K M S L F - V K Q N I I E L C W T I S P K C H F S K - N K I - L N C A Y G L S V Q N V T F L S E T K Y N - I V . . . . . . 71547 ATTTTACTTGGCCAACCATTTATCTGTTCACACTATATGACAGATTTGAATTCAAGATCC I L L G Q P F I C S H Y M T D L N S R S F Y L A N H L S V H T I - Q I - I Q D P H F T W P T I Y L F T L Y D R F E F K I . . . . . . 71607 TCATCACAATTTATATCATTGAGCGCTACCTCATATCAAAGATACCTTCGACGGTTATTT S S Q F I S L S A T S Y Q R Y L R R L F H H N L Y H - A L P H I K D T F D G Y L L I T I Y I I E R Y L I S K I P S T V I . . . . . . 71667 GATATCGATTCCAACAGGACATAACTTATCGAGATCTCTTCATTTTTCATTATTTCAGGT D I D S N R T - L I E I S S F F I I S G I S I P T G H N L S R S L H F S L F Q V - Y R F Q Q D I T Y R D L F I F H Y F R . . . . . . 71727 ACCTGAACCTTTTTCAAAATTTTATGAAGTGTTATGTCAATGTGCTCTTTTATAGCACTT T - T F F K I L - S V M S M C S F I A L P E P F S K F Y E V L C Q C A L L - H L Y L N L F Q N F M K C Y V N V L F Y S T . . . . . . 71787 GCCTCATTATCATGACCATATTGATCATTTGCTCCTTCCTTCTTCAAGGAATTTTATATT A S L S - P Y - S F A P S F F K E F Y I P H Y H D H I D H L L L P S S R N F I F C L I I M T I L I I C S F L L Q G I L Y . . . . . 71847 TGGAATCGATTGGTCTATTACGCTTCCGGCGTATCATAGACTCTG W N R L V Y Y A S G V S - T L G I D W S I T L P A Y H R L L E S I G L L R F R R I I D S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-13_AGS-1_PPS_1 (71026 71448) (frame '2'; 420 bp, 140 residues) 1 TNILFVKLTI CRSRQNFVLP RPFHKNTRKI RVILLYPFSS LTISIHIRIL EALLEKFLSN 61 SYMLQTPRLF QEFSYNLHCL ARHYNYSFTC IQVFICCQIK TNLISSTKGE NISTNVRIFA 121 INLYAPRHKP YLISYGYTIA - >C09HBa0099P03.1-2+_PGL-13_AGS-1_PPS_2 (71669 71890) (frame '0'; 222 bp, 74 residues) 1 YRFQQDITYR DLFIFHYFRY LNLFQNFMKC YVNVLFYSTC LIIMTILIIC SFLLQGILYL 61 ESIGLLRFRR IIDS 3-phase translation of AGS-1 (-strand): . . . . . . 71891 CAGAGTCTATGATACGCCGGAAGCGTAATAGACCAATCGATTCCAAATATAAAATTCCTT Q S L - Y A G S V I D Q S I P N I K F L R V Y D T P E A - - T N R F Q I - N S L E S M I R R K R N R P I D S K Y K I P . . . . . . 71831 GAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGA E E G R S K - S I W S - - - G K C Y K R K K E G A N D Q Y G H D N E A S A I K E - R R K E Q M I N M V M I M R Q V L - K . . . . . . 71771 GCACATTGACATAACACTTCATAAAATTTTGAAAAAGGTTCAGGTACCTGAAATAATGAA A H - H N T S - N F E K G S G T - N N E H I D I T L H K I L K K V Q V P E I M K S T L T - H F I K F - K R F R Y L K - - . . . . . . 71711 AAATGAAGAGATCTCGATAAGTTATGTCCTGTTGGAATCGATATCAAATAACCGTCGAAG K - R D L D K L C P V G I D I K - P S K N E E I S I S Y V L L E S I S N N R R R K M K R S R - V M S C W N R Y Q I T V E . . . . . . 71651 GTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGATGAGGATCTTGAATTCAA V S L I - G S A Q - Y K L - - G S - I Q Y L - Y E V A L N D I N C D E D L E F K G I F D M R - R S M I - I V M R I L N S . . . . . . 71591 ATCTGTCATATAGTGTGAACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAATTAT I C H I V - T D K W L A K - N A Q F N Y S V I - C E Q I N G W P S K M H N S I I N L S Y S V N R - M V G Q V K C T I Q L . . . . . . 71531 ATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGATAGTCCATAAATCAAGATATAAT I L F H L E K - H F G L I V H K S R Y N F C F T - K S D I L D - - S I N Q D I M Y F V S L R K V T F W T D S P - I K I - . . . . . . 71471 GTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAACCGTAAGATATCAAATACGGT V S G V Q I N Y Y A I V - P - D I K Y G S V G Y K - I I M R - Y N R K I S N T V C Q W G T N K L L C D S I T V R Y Q I R . . . . . . 71411 TTGTGCCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTAGTGGAGATGTTTTCT L C L G A - R F I A K I L T L V E M F S C A L G H K G L S Q K S - H - W R C F L F V P W G I K V Y R K N P D I S G D V F . . . . . . 71351 CCTTTGGTGGATGAAATGAGGTTTGTTTTGATCTGGCAACATATGAAAACTTGAATGCAT P L V D E M R F V L I W Q H M K T - M H L W W M K - G L F - S G N I - K L E C M S F G G - N E V C F D L A T Y E N L N A . . . . . . 71291 GTAAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATTCTTGAAAC V N E - L - C L A R Q - R L Y E N S - N - M N N C N V - L D N E G Y M K I L E T C K - I I V M S S - T M K V I - K F L K . . . . . . 71231 AATCGAGGTGTCTGAAGCATATAAGAGTTTGAAAGAAACTTTTCCAATAAAGCTTCAAGA N R G V - S I - E F E R N F S N K A S R I E V S E A Y K S L K E T F P I K L Q E Q S R C L K H I R V - K K L F Q - S F K . . . . . . 71171 ATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAAGGGTACAAAAGAATGACCCTAATT I L I W I E I V K E E K G Y K R M T L I S L Y G L K - S R K K K G T K E - P - F N P Y M D - N S Q G R K R V Q K N D P N . . . . . . 71111 TTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTAGACCTACAGATT F L V F L - K G L G K T K F C L D L Q I S L Y F Y E K V L V R Q N F V - T Y R L F P C I F M K R S W - D K I L S R P T D . . . . . . 71051 GTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGC V N L T N K I F V - Q C T Y T E K F - C L I - Q I K Y L S N S A H T L K N F D A C - F D K - N I C L T V H I H - K I L M . . . . . . 70991 AATTTTATGTGGATATCTCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGACA N F M W I S R I H - V P Q - L - D H L T I L C G Y L A F I E Y P N D Y E I T - H Q F Y V D I S H S L S T P M I M R S L D . . . . . . 70931 TAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGAACAGTTTCTTGGTGATGAAACTC - M M I Q F D L K R R M N S F L V M K L K - - F S L I S K E G - T V S W - - N S I N D D S V - S Q K K D E Q F L G D E T . . . . . . 70871 TATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACCAGATATTTGT Y L G A I R A L V H L T N N I - P D I C I L V Q S G H - C I L L T I F D Q I F V L S W C N Q G T S A S Y - Q Y L T R Y L . . . . . . 70811 TTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGT F A V N L L A R F S F S P I K G H - N G L Q - I Y W Q D S V S P R - K D I E M V F C S K F T G K I Q F L P D K R T L K W . . . . . . 70751 GTTGAGCACATGATTGAATATCCTCGAAGGACCATAGTTATGAGTTTATTCTATCCCGAG V E H M I E Y P R R T I V M S L F Y P E L S T - L N I L E G P - L - V Y S I P R C - A H D - I S S K D H S Y E F I L S R . . . . . 70691 GAATCCAAGACAAAATTGATTGATTACGCAGATGCATAATATTTA E S K T K L I D Y A D A - Y L N P R Q N - L I T Q M H N I G I Q D K I D - L R R C I I F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-13_AGS-1_PPS_1 (71839 71642) (frame '2'; 195 bp, 65 residues) 1 NSLKKEGAND QYGHDNEASA IKEHIDITLH KILKKVQVPE IMKNEEISIS YVLLESISNN 61 RRRYL- PGL 14 (- strand): 75603 73340 AGS-1 (74177 73340) SCR (e 0.884) Exon 1 74177 73340 ( 838 n); score: 0.884 PGS (73970 73340) SGN-E542836- PGS (73706 73355) SGN-E204533- PGS (74157 73393) SGN-E354965+ PGS (74177 74090) SGN-E261435- PGS (74177 74090) SGN-E263280- PGS (74177 74090) SGN-E375221- PGS (74177 74090) SGN-E260221- PGS (74177 74090) SGN-E260587- PGS (74177 74090) SGN-E260602- PGS (74177 74090) SGN-E255405- PGS (74177 74090) SGN-E251501- PGS (74177 74090) SGN-E256408- PGS (74177 74090) SGN-E259955- PGS (74177 74090) SGN-E250041- PGS (74177 74090) SGN-E261191- 3-phase translation of AGS-1 (-strand): . . . . . . 74177 CATAATGAAAAATATTTGAGGATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGT H N E K Y L R I R R - I Q V L S H Q K G I M K N I - G - D D R F K F Y R T K R V - - K I F E D K T I D S S S I A P K G . . . . . . 74117 AAGACATCAATTTGAGTTTTGATGCACCGCGATTGGGTTCAAGTCCCATAGAATTATGGC K T S I - V L M H R D W V Q V P - N Y G R H Q F E F - C T A I G F K S H R I M A - D I N L S F D A P R L G S S P I E L W . . . . . . 74057 GTAACACGCCTTATATGGATAAGACATTGGGTTTGAGTCAATGCACCATAGTGATGATAT V T R L I W I R H W V - V N A P - - - Y - H A L Y G - D I G F E S M H H S D D I R N T P Y M D K T L G L S Q C T I V M I . . . . . . 73997 AATGATGACTAAGGCTTTGATGAAAAGTCTTGAAATTCGTCCTGTTGAATTTGCTCCATT N D D - G F D E K S - N S S C - I C S I M M T K A L M K S L E I R P V E F A P F - - - L R L - - K V L K F V L L N L L H . . . . . . 73937 CCTTGAAAAGAATGTGGTAGCAACATACGATAATTTTAAAATTGCATGTTCACTTGCTCC P - K E C G S N I R - F - N C M F T C S L E K N V V A T Y D N F K I A C S L A P S L K R M W - Q H T I I L K L H V H L L . . . . . . 73877 ATTCTATCGTATGAATGTGGTAGCAGTAAATAGTTAGTCTGAAAGATGACAAATGATTAA I L S Y E C G S S K - L V - K M T N D - F Y R M N V V A V N S - S E R - Q M I N H S I V - M W - Q - I V S L K D D K - L . . . . . . 73817 CGATATGAAAAAAGGCATGAAGGGACGGAATTATAATAGTCATCATTGTGGTAATTATAA R Y E K R H E G T E L - - S S L W - L - D M K K G M K G R N Y N S H H C G N Y K T I - K K A - R D G I I I V I I V V I I . . . . . . 73757 AAGAAAGAACACTATGGGTTCTCCAAATAGTCCTTCGAAATGTGAAGACAGTTTTCATTA K K E H Y G F S K - S F E M - R Q F S L R K N T M G S P N S P S K C E D S F H Y K E R T L W V L Q I V L R N V K T V F I . . . . . . 73697 TCAAAATGGTACGAAAGGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAG S K W Y E R S L D L - M L S T Q - F D K Q N G T K G H - T C E C C Q P N N L T S I K M V R K V I R L V N V V N P I I - Q . . . . . . 73637 TTTATAAATCCTCTATCATGATACAAGAAAATAAAGTGATGGTACACTTGATCATTCAAA F I N P L S - Y K K I K - W Y T - S F K L - I L Y H D T R K - S D G T L D H S K V Y K S S I M I Q E N K V M V H L I I Q . . . . . . 73577 ATGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTAT M M L R C V M E I - - I L K S - Q C A Y - C - G V S W K Y D E F - S H D N V L I N D V E V C H G N M M N F K V M T M C L . . . . . . 73517 AATGCAAATTGATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGAGAATGTGACTT N A N - - S T Y K - L V H S L K R M - L M Q I D E V H I N N - F I P - R E C D L - C K L M K Y I - I I S S F L E E N V T . . . . . . 73457 ATGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGAGCAAA M M S I V N A R P F Y K R M G P D V S K - - V S - M L D H S I R E W V Q M - A N Y D E Y R E C S T I L - E N G S R C E Q . . . . . . 73397 TCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTTGAGAAAAAAAA S L W V G Y M S Q L T S I E G L R K K H Y G L D I C H N S P L - K V - E K K I I M G W I Y V T T H L Y R R F E K K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-14_AGS-1_PPS_1 (74035 73841) (frame '2'; 192 bp, 64 residues) 1 DIGFESMHHS DDIMMTKALM KSLEIRPVEF APFLEKNVVA TYDNFKIACS LAPFYRMNVV 61 AVNS- 3-phase translation of AGS-1 (+strand): . . . . . . 73340 TTTTTTTTCTCAAACCTTCTATAGAGGTGAGTTGTGACATATATCCAACCCATAATGATT F F F S N L L - R - V V T Y I Q P I M I F F S Q T F Y R G E L - H I S N P - - F F F L K P S I E V S C D I Y P T H N D . . . . . . 73400 TGCTCACATCTGGACCCATTCTCTTATAGAATGGTCGAGCATTCACGATACTCATCATAA C S H L D P F S Y R M V E H S R Y S S - A H I W T H S L I E W S S I H D T H H K L L T S G P I L L - N G R A F T I L I I . . . . . . 73460 GTCACATTCTCTTCAAGGAATGAACTAATTATTTATATGTACTTCATCAATTTGCATTAT V T F S S R N E L I I Y M Y F I N L H Y S H S L Q G M N - L F I C T S S I C I I S H I L F K E - T N Y L Y V L H Q F A L . . . . . . 73520 AAGCACATTGTCATGACTTTAAAATTCATCATATTTCCATGACACACCTCAACATCATTT K H I V M T L K F I I F P - H T S T S F S T L S - L - N S S Y F H D T P Q H H F - A H C H D F K I H H I S M T H L N I I . . . . . . 73580 TGAATGATCAAGTGTACCATCACTTTATTTTCTTGTATCATGATAGAGGATTTATAAACT - M I K C T I T L F S C I M I E D L - T E - S S V P S L Y F L V S - - R I Y K L L N D Q V Y H H F I F L Y H D R G F I N . . . . . . 73640 TGTCAAATTATTGGGTTGACAACATTCACAAGTCTAATGACCTTTCGTACCATTTTGATA C Q I I G L T T F T S L M T F R T I L I V K L L G - Q H S Q V - - P F V P F - - L S N Y W V D N I H K S N D L S Y H F D . . . . . . 73700 ATGAAAACTGTCTTCACATTTCGAAGGACTATTTGGAGAACCCATAGTGTTCTTTCTTTT M K T V F T F R R T I W R T H S V L S F - K L S S H F E G L F G E P I V F F L L N E N C L H I S K D Y L E N P - C S F F . . . . . . 73760 ATAATTACCACAATGATGACTATTATAATTCCGTCCCTTCATGCCTTTTTTCATATCGTT I I T T M M T I I I P S L H A F F H I V - L P Q - - L L - F R P F M P F F I S L Y N Y H N D D Y Y N S V P S C L F S Y R . . . . . . 73820 AATCATTTGTCATCTTTCAGACTAACTATTTACTGCTACCACATTCATACGATAGAATGG N H L S S F R L T I Y C Y H I H T I E W I I C H L S D - L F T A T T F I R - N G - S F V I F Q T N Y L L L P H S Y D R M . . . . . . 73880 AGCAAGTGAACATGCAATTTTAAAATTATCGTATGTTGCTACCACATTCTTTTCAAGGAA S K - T C N F K I I V C C Y H I L F K E A S E H A I L K L S Y V A T T F F S R N E Q V N M Q F - N Y R M L L P H S F Q G . . . . . . 73940 TGGAGCAAATTCAACAGGACGAATTTCAAGACTTTTCATCAAAGCCTTAGTCATCATTAT W S K F N R T N F K T F H Q S L S H H Y G A N S T G R I S R L F I K A L V I I I M E Q I Q Q D E F Q D F S S K P - S S L . . . . . . 74000 ATCATCACTATGGTGCATTGACTCAAACCCAATGTCTTATCCATATAAGGCGTGTTACGC I I T M V H - L K P N V L S I - G V L R S S L W C I D S N P M S Y P Y K A C Y A Y H H Y G A L T Q T Q C L I H I R R V T . . . . . . 74060 CATAATTCTATGGGACTTGAACCCAATCGCGGTGCATCAAAACTCAAATTGATGTCTTAC H N S M G L E P N R G A S K L K L M S Y I I L W D L N P I A V H Q N S N - C L T P - F Y G T - T Q S R C I K T Q I D V L . . . . . . 74120 CCTTTTGGTGCGATAGAACTTGAATCTATCGTCTTATCCTCAAATATTTTTCATTATG P F G A I E L E S I V L S S N I F H Y L L V R - N L N L S S Y P Q I F F I M P F W C D R T - I Y R L I L K Y F S L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2+_PGL-14_AGS-1_PPS_1 (73637 73888) (frame '1'; 249 bp, 83 residues) 1 TCQIIGLTTF TSLMTFRTIL IMKTVFTFRR TIWRTHSVLS FIITTMMTII IPSLHAFFHI 61 VNHLSSFRLT IYCYHIHTIE WSK- >C09HBa0099P03.1-2+_PGL-14_AGS-1_PPS_2 (73875 74111) (frame '2'; 234 bp, 78 residues) 1 NGASEHAILK LSYVATTFFS RNGANSTGRI SRLFIKALVI IISSLWCIDS NPMSYPYKAC 61 YAIILWDLNP IAVHQNSN- >C09HBa0099P03.1-2+_PGL-14_AGS-1_PPS_3 (73522 73746) (frame '0'; 222 bp, 74 residues) 1 AHCHDFKIHH ISMTHLNIIL NDQVYHHFIF LYHDRGFINL SNYWVDNIHK SNDLSYHFDN 61 ENCLHISKDY LENP- AGS-2 (75603 75569,74794 74766,74247 74167,74089 73985) SCR (e 0.714 d 0.000 a 0.000,e 0.655 d 0.900 a 0.000,e 0.827 d 0.000 a 0.000,e 0.819) Exon 1 75603 75569 ( 35 n); score: 0.714 Intron 1 75568 74795 ( 774 n); Pd: 0.000 Pa: 0.000 Exon 2 74794 74766 ( 29 n); score: 0.655 Intron 2 74765 74248 ( 518 n); Pd: 0.900 Pa: 0.000 Exon 3 74247 74167 ( 81 n); score: 0.827 Intron 3 74166 74090 ( 77 n); Pd: 0.000 Pa: 0.000 Exon 4 74089 73985 ( 105 n); score: 0.819 PGS (75603 75569,74794 74766,74247 74167,74089 73985) SGN-E250127- PGS (74247 74167,74089 73985) SGN-E248730- PGS (74245 74167,74089 73985) SGN-E254688- 3-phase translation of AGS-2 (-strand): . . . . : . . 75603 TATTTGATCTCATCTTATTATAAAAAAAACTAATA : TGTATCTATTTACTATGATACTTAA Y L I S S Y Y K K N - Y : V S I Y Y D T - I - S H L I I K K T N : M Y L F T M I L N F D L I L L - K K L I : C I Y L L - Y L . : . . . . . 74769 TATG : AGGGTAAGACGATGAATTCAAGTTTCATCGCACCAAAAGGGTAAGACATCAGGTTA Y : E G K T M N S S F I A P K G - D I R L M : R V R R - I Q V S S H Q K G K T S G - I - : G - D D E F K F H R T K R V R H Q V . . . : . . . 74191 AAGTCCGGATGCACCATAATGAAAA : GCGATTGGGTTCAAGTCCCATAGAATTATGGCGTA K S G C T I M K : S D W V Q V P - N Y G V S P D A P - - K : A I G F K S H R I M A - K V R M H H N E K : R L G S S P I E L W R . . . . . . 74054 ACACGCCTTATATGGATAAGACATTGGGTTTGAGTCAATGCACCATAGTGATGATATAAT T R L I W I R H W V - V N A P - - - Y N H A L Y G - D I G F E S M H H S D D I M N T P Y M D K T L G L S Q C T I V M I - . 73994 GATGACTAAG D D - M T K - - L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (74602 74218) SCR (e 0.929) Exon 1 74602 74218 ( 385 n); score: 0.929 PGS (74602 74218) SGN-E338242+ PGS (74602 74258) SGN-E548779+ PGS (74591 74299) SGN-E301830+ 3-phase translation of AGS-3 (-strand): . . . . . . 74602 TTTTATAACACGTTATCAGCACGAGTCTCTATCTAATTGAGAGTGGGTTCTTGTTTTTCT F Y N T L S A R V S I - L R V G S C F S F I T R Y Q H E S L S N - E W V L V F L L - H V I S T S L Y L I E S G F L F F . . . . . . 74542 TTAGCTCATATTTTGGTTGATCTCGTTATGAAGATCAAAGTATTATATGCATAAAATCAG L A H I L V D L V M K I K V L Y A - N Q - L I F W L I S L - R S K Y Y M H K I R F S S Y F G - S R Y E D Q S I I C I K S . . . . . . 74482 GTATGTATTTTCTAAAATATTTTATGATTTAGAATAAAATAGTATTCAATCACTAATAAT V C I F - N I L - F R I K - Y S I T N N Y V F S K I F Y D L E - N S I Q S L I I G M Y F L K Y F M I - N K I V F N H - - . . . . . . 74422 TATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATACAAAACTTC Y Q E P K T Y T T I G - I - H A I Q N F I R N R R H I L L L V E Y D M L Y K T S L S G T E D I Y Y Y W L N M T C Y T K L . . . . . . 74362 TTAAATAGAAGAAGGTATAAAATTTTAATAGCATGAATTTGAATGTTATTTTGATTGTTT L N R R R Y K I L I A - I - M L F - L F - I E E G I K F - - H E F E C Y F D C F L K - K K V - N F N S M N L N V I L I V . . . . . . 74302 TGAATGACTCAAAGGGTGAGTCATGTTGTACTTCGGTTTATTATACCGTTGGTTAAGGGT - M T Q R V S H V V L R F I I P L V K G E - L K G - V M L Y F G L L Y R W L R V L N D S K G E S C C T S V Y Y T V G - G . . . 74242 AAGACGATGAATTCAAGTTTCATCG K T M N S S F I R R - I Q V S S - D D E F K F H Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (+strand): . . . . . . 74218 CGATGAAACTTGAATTCATCGTCTTACCCTTAACCAACGGTATAATAAACCGAAGTACAA R - N L N S S S Y P - P T V - - T E V Q D E T - I H R L T L N Q R Y N K P K Y N M K L E F I V L P L T N G I I N R S T . . . . . . 74278 CATGACTCACCCTTTGAGTCATTCAAAACAATCAAAATAACATTCAAATTCATGCTATTA H D S P F E S F K T I K I T F K F M L L M T H P L S H S K Q S K - H S N S C Y - T - L T L - V I Q N N Q N N I Q I H A I . . . . . . 74338 AAATTTTATACCTTCTTCTATTTAAGAAGTTTTGTATAGCATGTCATATTCAACCAATAG K F Y T F F Y L R S F V - H V I F N Q - N F I P S S I - E V L Y S M S Y S T N S K I L Y L L L F K K F C I A C H I Q P I . . . . . . 74398 TAGTATATGTCTTCGGTTCCTGATAATTATTAGTGATTGAATACTATTTTATTCTAAATC - Y M S S V P D N Y - - L N T I L F - I S I C L R F L I I I S D - I L F Y S K S V V Y V F G S - - L L V I E Y Y F I L N . . . . . . 74458 ATAAAATATTTTAGAAAATACATACCTGATTTTATGCATATAATACTTTGATCTTCATAA I K Y F R K Y I P D F M H I I L - S S - - N I L E N T Y L I L C I - Y F D L H N H K I F - K I H T - F Y A Y N T L I F I . . . . . . 74518 CGAGATCAACCAAAATATGAGCTAAAGAAAAACAAGAACCCACTCTCAATTAGATAGAGA R D Q P K Y E L K K N K N P L S I R - R E I N Q N M S - R K T R T H S Q L D R D T R S T K I - A K E K Q E P T L N - I E . . . 74578 CTCGTGCTGATAACGTGTTATAAAA L V L I T C Y K S C - - R V I K T R A D N V L - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (75175 74938) SCR (e 0.775) Exon 1 75175 74938 ( 238 n); score: 0.775 PGS (75175 74938) SGN-E320586+ 3-phase translation of AGS-4 (-strand): . . . . . . 75175 AAAAATATTTACTTTGATATAATTTTTAAATATTTCTTATATTTAAGTTTGAAACTTAGA K N I Y F D I I F K Y F L Y L S L K L R K I F T L I - F L N I S Y I - V - N L E K Y L L - Y N F - I F L I F K F E T - . . . . . . 75115 ATTTTGGATGGTTCCATAAATATTATAGTCCACATGTGTTGGTAATTATAATAAAACTCA I L D G S I N I I V H M C W - L - - N S F W M V P - I L - S T C V G N Y N K T Q N F G W F H K Y Y S P H V L V I I I K L . . . . . . 75055 AATCAAAATTAAATTAATATTGATGCAAAAAGGAAATCTATTTAGCATTAAGAATGACAA N Q N - I N I D A K R K S I - H - E - Q I K I K L I L M Q K G N L F S I K N D N K S K L N - Y - C K K E I Y L A L R M T . . . . . . 74995 TAATATTAAATATTTGTTCTTTGATTTTACGTTGATTTAGACAATTGAAATACATAAT - Y - I F V L - F Y V D L D N - N T - N I K Y L F F D F T L I - T I E I H N I I L N I C S L I L R - F R Q L K Y I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 74938 ATTATGTATTTCAATTGTCTAAATCAACGTAAAATCAAAGAACAAATATTTAATATTATT I M Y F N C L N Q R K I K E Q I F N I I L C I S I V - I N V K S K N K Y L I L L Y V F Q L S K S T - N Q R T N I - Y Y . . . . . . 74998 GTCATTCTTAATGCTAAATAGATTTCCTTTTTGCATCAATATTAATTTAATTTTGATTTG V I L N A K - I S F L H Q Y - F N F D L S F L M L N R F P F C I N I N L I L I - C H S - C - I D F L F A S I L I - F - F . . . . . . 75058 AGTTTTATTATAATTACCAACACATGTGGACTATAATATTTATGGAACCATCCAAAATTC S F I I I T N T C G L - Y L W N H P K F V L L - L P T H V D Y N I Y G T I Q N S E F Y Y N Y Q H M W T I I F M E P S K I . . . . . . 75118 TAAGTTTCAAACTTAAATATAAGAAATATTTAAAAATTATATCAAAGTAAATATTTTT - V S N L N I R N I - K L Y Q S K Y F K F Q T - I - E I F K N Y I K V N I F L S F K L K Y K K Y L K I I S K - I F Maximal non-overlapping open reading frames (>= 64 codons): none PGL 15 (+ strand): 77038 77836 AGS-1 (77038 77836) SCR (e 0.915) Exon 1 77038 77836 ( 799 n); score: 0.915 PGS (77038 77630) SGN-E546563- PGS (77194 77679) SGN-E203362- PGS (77434 77836) SGN-E354195+ 3-phase translation of AGS-1 (+strand): . . . . . . 77038 TTTTGATAATTTGACAAACTTAGGGACCTCATAAAGGTACCGGGTTTTCTACTTGAGTAT F - - F D K L R D L I K V P G F L L E Y F D N L T N L G T S - R Y R V F Y L S I L I I - Q T - G P H K G T G F S T - V . . . . . . 77098 TGCAGGTGTCTTGTTTGAAGTATTGCAGATGAAACAAACTCAGGGACCTAGTAGAGGTAC C R C L V - S I A D E T N S G T - - R Y A G V L F E V L Q M K Q T Q G P S R G T L Q V S C L K Y C R - N K L R D L V E V . . . . . . 77158 CAGGCCCTCATGATGATGAGCCAGTCAACTGCCAATTGGAGACGTACAGAAAGTAGGTGC Q A L M M M S Q S T A N W R R T E S R C R P S - - - A S Q L P I G D V Q K V G A P G P H D D E P V N C Q L E T Y R K - V . . . . . . 77218 ACACTTCTCGATGGCGTCAGAAAAGTGTGACCTTTCCAACCAATGGCAAAGAAGTTTAGG T L L D G V R K V - P F Q P M A K K F R H F S M A S E K C D L S N Q W Q R S L G H T S R W R Q K S V T F P T N G K E V - . . . . . . 77278 AAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTCTTTCAGTTTTTGCAAC K V T C P Y K R H F P K H L S F S F C N K - L A H I K G T F L N I C L S V F A T E S D L P I - K A L S - T F V F Q F L Q . . . . . . 77338 TTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTACACAAAGCAAAGGCAGAATCATTC L I K T F Q E L L Q R L H K A K A E S F - - K L F K N S C K G Y T K Q R Q N H S L D K N F S R T L A K A T Q S K G R I I . . . . . . 77398 CTAGGACAACAGCAACATCTGGAGCTTTTCGTCTAGTTGTTTAGGAATTTATTCTCTTGT L G Q Q Q H L E L F V - L F R N L F S C - D N S N I W S F S S S C L G I Y S L V P R T T A T S G A F R L V V - E F I L L . . . . . . 77458 TCTTAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCT S - I V N H S - I Y K G I G V L C - K S L K L - T T P K S I K E L V C C V K S L F L N C K P L L N L - R N W C V V L K V . . . . . . 77518 AGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTTGGCTTGTTGAGC R L S R W D S L V G R L F F Y F G L L S G C P G G I A - W V D C F S T L A C - A - V V Q V G - L S G - I V F L L W L V E . . . . . . 77578 AATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCG N R G L L L N G K I D N S F L R L V - S I E V Y C L T V R L I T L S Y V W C N R Q - R S I A - R - D - - L F L T F G V I . . . . . . 77638 TGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAAATCCTGTGAGATAGGTCG C F A F A F E D - - K R L K I L - D R S V S L L L L K I S E N D - K S C E I G R V F R F C F - R L V K T I E N P V R - V . . . . . . 77698 TGGTTTTACTCCCTTAAGCAAGGAGGTTTCCACGTAAAATCATTGTGTTAATTTTACTGC W F Y S L K Q G G F H V K S L C - F Y C G F T P L S K E V S T - N H C V N F T A V V L L P - A R R F P R K I I V L I L L . . . . . . 77758 ATTTAACTTTCTGGTAATTTTCTGAAGTAAAGTAAGAGACCTGGTCCATTACTAATAAGT I - L S G N F L K - S K R P G P L L I S F N F L V I F - S K V R D L V H Y - - V H L T F W - F S E V K - E T W S I T N K . . 77818 GAAGGCATAAATTCTATCA E G I N S I K A - I L S - R H K F Y Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 77836 TGATAGAATTTATGCCTTCACTTATTAGTAATGGACCAGGTCTCTTACTTTACTTCAGAA - - N L C L H L L V M D Q V S Y F T S E D R I Y A F T Y - - W T R S L T L L Q K I E F M P S L I S N G P G L L L Y F R . . . . . . 77776 AATTACCAGAAAGTTAAATGCAGTAAAATTAACACAATGATTTTACGTGGAAACCTCCTT N Y Q K V K C S K I N T M I L R G N L L I T R K L N A V K L T Q - F Y V E T S L K L P E S - M Q - N - H N D F T W K P P . . . . . . 77716 GCTTAAGGGAGTAAAACCACGACCTATCTCACAGGATTTTCAATCGTTTTCACTAATCTT A - G S K T T T Y L T G F S I V F T N L L K G V K P R P I S Q D F Q S F S L I F C L R E - N H D L S H R I F N R F H - S . . . . . . 77656 CAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGT Q K Q K R N T I T P N V R K S Y Q S Y R K S K S E T R L H Q T - E R V I N L T V S K A K A K H D Y T K R K K E L S I L P . . . . . . 77596 TAAGCAATAGACCTCTATTGCTCAACAAGCCAAAGTAGAAAAACAATCTACCCACTAAGC - A I D L Y C S T S Q S R K T I Y P L S K Q - T S I A Q Q A K V E K Q S T H - A L S N R P L L L N K P K - K N N L P T K . . . . . . 77536 TATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAATTCCTTTATAGATTTAGG Y P T W T T - T F N T T H Q F L Y R F R I P P G Q P R L L T Q H T N S F I D L G L S H L D N L D F - H N T P I P L - I - . . . . . . 77476 AGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCA S G L Q F K N K R I N S - T T R R K A P V V Y N L R T R E - I P K Q L D E K L Q E W F T I - E Q E N K F L N N - T K S S . . . . . . 77416 GATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTGTAGCCTTTGCAAGAGTT D V A V V L G M I L P L L C V A F A R V M L L L S - E - F C L C F V - P L Q E F R C C C C P R N D S A F A L C S L C K S . . . . . . 77356 CTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAAGACAAATGTTTAGGAAAGTGCCTTT L E K F L S S C K N - K T N V - E S A F L K S F Y Q V A K T E R Q M F R K V P F S - K V F I K L Q K L K D K C L G K C L . . . . . . 77296 TATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAAGGTCACACTTTTC Y M G K S L S - T S L P L V G K V T L F I W A S H F P K L L C H W L E R S H F S L Y G Q V T F L N F F A I G W K G H T F . . . . . . 77236 TGACGCCATCGAGAAGTGTGCACCTACTTTCTGTACGTCTCCAATTGGCAGTTGACTGGC - R H R E V C T Y F L Y V S N W Q L T G D A I E K C A P T F C T S P I G S - L A L T P S R S V H L L S V R L Q L A V D W . . . . . . 77176 TCATCATCATGAGGGCCTGGTACCTCTACTAGGTCCCTGAGTTTGTTTCATCTGCAATAC S S S - G P G T S T R S L S L F H L Q Y H H H E G L V P L L G P - V C F I C N T L I I M R A W Y L Y - V P E F V S S A I . . . . . . 77116 TTCAAACAAGACACCTGCAATACTCAAGTAGAAAACCCGGTACCTTTATGAGGTCCCTAA F K Q D T C N T Q V E N P V P L - G P - S N K T P A I L K - K T R Y L Y E V P K L Q T R H L Q Y S S R K P G T F M R S L . . 77056 GTTTGTCAAATTATCAAAA V C Q I I K F V K L S K S L S N Y Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0099P03.1-2-_PGL-15_AGS-1_PPS_1 (77351 77145) (frame '0'; 204 bp, 68 residues) 1 KVFIKLQKLK DKCLGKCLLY GQVTFLNFFA IGWKGHTFLT PSRSVHLLSV RLQLAVDWLI 61 IMRAWYLY- ... finished at: Tue Aug 29 01:10:39 2006