GeneSeqer. Version of March 12, 2006. Date run: Tue Aug 29 00:30:09 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-xAVTT/C09HBa0168F14/C09HBa0168F14.seq.screen ________________________________________________________________________________ Sequence 1: C09HBa0168F14.1-1, from 1 to 48358, both strands analyzed. ... started at: Tue Aug 29 00:53:52 2006 EST library file: /tmp/cxgn-bacpublish-resources-2PrVad/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 10 EST library file: /tmp/cxgn-bacpublish-resources-2PrVad/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 5 HitsTableSize = 49 ******************************************************************************** EST sequence 11 +strand 318 n (File: SGN-E313741+) 1 CCCACAAAGC GAGAGAGAGA GAGAAGAAAT TTACTTTCAG AGAAACTAAA ATTAGCTGCC 61 GATTATCGCT ATTGCTTCAA TCGTTGAAGA ACGAAAAAGG GTTCTCAATT TCTATCTCAG 121 GAGTTGCAGC GCCAGATTAT CTTCCTAGAA ATATAAGATG CCCAGAACAA GGGCCAGTGC 181 TGCAGCTATT AAATCTGAAC CCGAGAAACC TGTTGAGACT GAAGAGCATG TTGACTTTGA 241 AGGTGATAAT GAAGAAGAGG AAGAGATTGA GTATGAAGAG GTAGAAGAAG AGGTGGAAAT 301 GGAAGAGGAA GAAGAAGA Predicted gene structure (within gDNA segment 2554 to 1): Exon 1 1954 1834 ( 121 n); cDNA 1 121 ( 121 n); score: 0.967 Intron 1 1833 1023 ( 811 n); Pd: 0.995 (s: 0.96), Pa: 0.990 (s: 0.56) Exon 2 1022 967 ( 56 n); cDNA 122 178 ( 57 n); score: 0.554 MATCH C09HBa0168F14.1-1- SGN-E313741+ 0.836 177 0.557 C PGS_C09HBa0168F14.1-1-_SGN-E313741+ (1954 1834,1022 967) Alignment (genomic DNA sequence = upper lines): CCCACAAAGC GAGAGAGAGA GAGAAGAAAT TTACTTTCAG AGAAACTAAA ATTAGCTGTC 1895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | CCCACAAAGC GAGAGAGAGA GAGAAGAAAT TTACTTTCAG AGAAACTAAA ATTAGCTGCC 60 GATTATCGCT TTTGCTTCAA TAGTTGAAGA AGGAAAAAGG GTTCTCAATT TCTATCTCAG 1835 |||||||||| ||||||||| | |||||||| | |||||||| |||||||||| |||||||||| GATTATCGCT ATTGCTTCAA TCGTTGAAGA ACGAAAAAGG GTTCTCAATT TCTATCTCAG 120 GGTAACAATT ACTTCTGTTT TATAGTACTA CTTGCTAAAT TATGATTTGT GTTTGTTTGT 1775 | G......... .......... .......... .......... .......... .......... 121 ATGCAATTCA GCATTTTTCT GCTATTTTTG AGAACCCTTT TTGCGGGTTT ATCCGGATTA 1715 .......... .......... .......... .......... .......... .......... 121 GATTTGTTTT GTTCTTTGCG ATGCAACTGG TTATCAAATT TTTGTGGGTA TACGTACATG 1655 .......... .......... .......... .......... .......... .......... 121 GATCTGTTTG AAATGACCTG TGGATTGATG TTGTTGTTTT GTTTCCTTGA ACAAGCTTGA 1595 .......... .......... .......... .......... .......... .......... 121 TTTTTGCCGC TTTAGAGGTT AAATGAGTTA GAGAGGATAT ATTGAGACTG TACCACTATA 1535 .......... .......... .......... .......... .......... .......... 121 ATGTTGGTTT TTTAAACCTA AAAGGAGAAC ATAGATGTGG GTTAGTTTGC TGATAGGTGA 1475 .......... .......... .......... .......... .......... .......... 121 AAATTGTGAC ATTAGGCATT TAGTGGGACA CCCAAGGGTG TGACTTAGTG GTTAATGAAG 1415 .......... .......... .......... .......... .......... .......... 121 TGGATTGGGC ACCATAAGGT TTCAGGTTGA ATTGATATTG CTGGTGGGAG GTGGTAGGCA 1355 .......... .......... .......... .......... .......... .......... 121 TTCTGTGGAA TAGTTGATGT GCGTTGTTAA AAAGAAATGA TTAATGGTGG GTTGTTGTCA 1295 .......... .......... .......... .......... .......... .......... 121 TTGTTGAAAG GTACATGTTT GGAAAGAGTG CATAACTGGG TTTCCAGGAT GTATAGTACC 1235 .......... .......... .......... .......... .......... .......... 121 ACTGAAATAT TCTTGATTTT GTGTTGGAGA ATCTTCTGAA TTAAATAAAG CTCAATATTT 1175 .......... .......... .......... .......... .......... .......... 121 TGAAATTTCT TTGAACTAGA ATTTGTAATA AGCTATACCT AGCTATTCTG TTCTTAGATT 1115 .......... .......... .......... .......... .......... .......... 121 GGTCTAGGAA GGTAGGAGGA TGGGAATTCA TTGCACCATA TTAGTACTTT TCTGTTTTAG 1055 .......... .......... .......... .......... .......... .......... 121 ACTCTTACAG ACTAATTGTT CTAAAACTGC AGTGGTAC-G CAGTAGA-CA TTTTCCAAGA 997 | | | | | ||| | | |||| ||| .......... .......... .......... ..AGTTGCAG CGCCAGATTA TCTTCCTAGA 149 AATAGGTGAT GTTTCAGAAA AATGTTCTGT 967 |||| ||| | ||||| || | | || AATATAAGAT G-CCCAGAAC AAGGGCCAGT 178 hqPGS_C09HBa0168F14.1-1-_SGN-E313741+ (1954 1834) ******************************************************************************** EST sequence 20 +strand 637 n (File: SGN-E340947+) 1 TCATCCATAG CAGAGACATG GACATGTCAA ATCCTGCCGT CTTTGTCAAT GCTGAGTTCC 61 TCAAGGAGCA TGTAGGACGG AAGGTTCGAA CAGTGGTTCA GGTTATGCAA TCTGATGGTG 121 ATAAAGTCAT TGGAAAATCC ACGGATGAAA AAGAATTAGT TGTGAAAGGA AATCCACCTA 181 ATGCTCTTTC AACTTTTGTT GAAGTAATTG GTATAGCTGA CACTATCCAG TCTATTGAAG 241 CAGAAATTTG GACCAATTTT GGTGATACAT TTGATGTTAA TAGCTATGAC AAGGTGTGCA 301 GACTAGCAAA TGGTGACAGT AAGCACTTGT TTATCTGAGA AATGATTTAT AAAAGAGGAC 361 ATATATCCTC TTATTTCTGC TGCATTGTTC CAGAGTTTCA ATGTATTATA AGTAGTTTGA 421 AGTACTCCTG AAAACTTTGG ATTTTCAGCT TCTATTTAGG GTTTCATCAA CAGAAGTTAA 481 GCTCTGTGCT TAGATGTAAA CTTGTTTTTC TTCAACTTAT GCTATTTGGT ATTTTGAACA 541 CTAATATTTG TGGTTCCACT AGTTAGTCAA CTTGGCATTA AACTAGCTGT GTTACATACA 601 TAAGTTGTAA CTTGTAAGTA TGAACTATGT CTAGTTC Predicted gene structure (within gDNA segment 7330 to 4272): Exon 1 6598 6341 ( 258 n); cDNA 16 273 ( 258 n); score: 1.000 Intron 1 6340 5246 (1095 n); Pd: 0.976 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5245 4882 ( 364 n); cDNA 274 637 ( 364 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E340947+ 1.000 622 0.976 C PGS_C09HBa0168F14.1-1-_SGN-E340947+ (6598 6341,5245 4882) Alignment (genomic DNA sequence = upper lines): ACATGGACAT GTCAAATCCT GCCGTCTTTG TCAATGCTGA GTTCCTCAAG GAGCATGTAG 6539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGGACAT GTCAAATCCT GCCGTCTTTG TCAATGCTGA GTTCCTCAAG GAGCATGTAG 75 GACGGAAGGT TCGAACAGTG GTTCAGGTTA TGCAATCTGA TGGTGATAAA GTCATTGGAA 6479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGGAAGGT TCGAACAGTG GTTCAGGTTA TGCAATCTGA TGGTGATAAA GTCATTGGAA 135 AATCCACGGA TGAAAAAGAA TTAGTTGTGA AAGGAAATCC ACCTAATGCT CTTTCAACTT 6419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCACGGA TGAAAAAGAA TTAGTTGTGA AAGGAAATCC ACCTAATGCT CTTTCAACTT 195 TTGTTGAAGT AATTGGTATA GCTGACACTA TCCAGTCTAT TGAAGCAGAA ATTTGGACCA 6359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAAGT AATTGGTATA GCTGACACTA TCCAGTCTAT TGAAGCAGAA ATTTGGACCA 255 ATTTTGGTGA TACATTTGGT ATGTCTTGCT TATGTTATTC ATATATATAC ACTTGGCTTC 6299 |||||||||| |||||||| ATTTTGGTGA TACATTTG.. .......... .......... .......... .......... 273 TCCTATATCC GTTAATGCAT TTGAATGTCA ATTTGTACCA AATTTGTTTC ACTGGCAATC 6239 .......... .......... .......... .......... .......... .......... 273 AAATCCATGA TTTTATTACT TGTTGTTTCT TTTGCTTCAT TTACGTCTTT TTTGTCGTTT 6179 .......... .......... .......... .......... .......... .......... 273 TGCTACTGTT CTTCTCCTTT ATCTTTAGCA TTATTTTCTC ATTACTGTAT TTTCTTCCAT 6119 .......... .......... .......... .......... .......... .......... 273 ACTTGAGTTT GATATGTTAT ACTTGAACCG AGGGTCTATC ACAAATAGTC ACTCTATCTT 6059 .......... .......... .......... .......... .......... .......... 273 CACAAGGTAG TAAGACTATA TACACACCAC CCTCCCCAAA CTCCACTCGT GGAATTACAC 5999 .......... .......... .......... .......... .......... .......... 273 TGGGTTTGTT ATTGTTGTTT TGCCCTTCTT TATGTCTTGT TCTGCGTATT TTTTCAAGGT 5939 .......... .......... .......... .......... .......... .......... 273 CATTTTGTAA GTTGCGAATA TAGAACTGCC TAAGGCCAAT GAACCATATA GTCTTCATAC 5879 .......... .......... .......... .......... .......... .......... 273 TCATCACTGA AAAGGAAAAG GATGGTGTTC TTTGATAAAG TTCATAACCC TATAATTGAT 5819 .......... .......... .......... .......... .......... .......... 273 GATAACACTA TGAATATGCA AACTTTATGG TTATCATCTA CCAGAAACCT TAAGATCTAT 5759 .......... .......... .......... .......... .......... .......... 273 AGATATTCAA CAGATGAGTG GGTTGTAGTC AATTAAGTGA ACTGAATAAT AGATTGTAGA 5699 .......... .......... .......... .......... .......... .......... 273 GTTAAACATT ATTGTCCTTC CCAACTCGGC CAATTTTATC TTCATTCCTT CACTTCTCTG 5639 .......... .......... .......... .......... .......... .......... 273 AAATGTTTCT ATACAAATGG TGACTGGGGA GGGTAAAGTT TACGATGTCC CTGTTCTATA 5579 .......... .......... .......... .......... .......... .......... 273 TGAAATTCAA GGATTAAAAC AAAGGGAGAT TTGGTTAGTG CGACTTTTCA GGTTATGATA 5519 .......... .......... .......... .......... .......... .......... 273 TCTATATTTA CGGTAGTGTT CTACTTTGTT TACAATCCTA TCATCATGCG ATAGCTGTTT 5459 .......... .......... .......... .......... .......... .......... 273 TTATACTTGC TCTGTCAAAC ATATTCAAGA CCAATGTAGT CATCAATTAT GTCCAAACTG 5399 .......... .......... .......... .......... .......... .......... 273 CATTTATTTT TGACACATTG TATAAGCATT TCATGTTGCT TGTTAAACTT CTACTCATGA 5339 .......... .......... .......... .......... .......... .......... 273 CTTAAGGTTT ATAGAAACTT TATGATGTGT ATCTAGTGCT TGTCTCTTGA TGATATATAC 5279 .......... .......... .......... .......... .......... .......... 273 TTGCTAATCT ACAAGTTCTT CAATATGTGA CAGATGTTAA TAGCTATGAC AAGGTGTGCA 5219 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATGTTAA TAGCTATGAC AAGGTGTGCA 300 GACTAGCAAA TGGTGACAGT AAGCACTTGT TTATCTGAGA AATGATTTAT AAAAGAGGAC 5159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTAGCAAA TGGTGACAGT AAGCACTTGT TTATCTGAGA AATGATTTAT AAAAGAGGAC 360 ATATATCCTC TTATTTCTGC TGCATTGTTC CAGAGTTTCA ATGTATTATA AGTAGTTTGA 5099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATCCTC TTATTTCTGC TGCATTGTTC CAGAGTTTCA ATGTATTATA AGTAGTTTGA 420 AGTACTCCTG AAAACTTTGG ATTTTCAGCT TCTATTTAGG GTTTCATCAA CAGAAGTTAA 5039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACTCCTG AAAACTTTGG ATTTTCAGCT TCTATTTAGG GTTTCATCAA CAGAAGTTAA 480 GCTCTGTGCT TAGATGTAAA CTTGTTTTTC TTCAACTTAT GCTATTTGGT ATTTTGAACA 4979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTGTGCT TAGATGTAAA CTTGTTTTTC TTCAACTTAT GCTATTTGGT ATTTTGAACA 540 CTAATATTTG TGGTTCCACT AGTTAGTCAA CTTGGCATTA AACTAGCTGT GTTACATACA 4919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATATTTG TGGTTCCACT AGTTAGTCAA CTTGGCATTA AACTAGCTGT GTTACATACA 600 TAAGTTGTAA CTTGTAAGTA TGAACTATGT CTAGTTC 4882 |||||||||| |||||||||| |||||||||| ||||||| TAAGTTGTAA CTTGTAAGTA TGAACTATGT CTAGTTC 637 hqPGS_C09HBa0168F14.1-1-_SGN-E340947+ (6598 6341,5245 4882) ******************************************************************************** EST sequence 35 +strand 655 n (File: SGN-E308527+) 1 CTCGTGCCGA ATTCGGCACG AGGATCCATA GCAGAGACAT GGACATGTCA AATCCTGCCG 61 TCTTTGTCAA TGCTGAGTTC CTCAAGGAGC ATGTAGGACG GAAGGTTCGA ACAGTGGTTC 121 AGGTTATGCA ATCTGATGGT GATAAAGTCA TTGGAAAATC CACGGATGAA AAAGAATTAG 181 TTGTGAAAGG AAATCCACCT AATGCTCTTT CAACTTTTGT TGAAGTAATT GGTATAGCTG 241 ACACTATCCA GTCTATTGAA GCAGAAATTT GGACCAATTT TGGTGATACA TTTGATGTTA 301 ATAGCTATGA CAAGGTGTGC AGACTAGCAA ATGGTGACAG TAAGCACTTG TTTATCTGAG 361 AAATGATTTA TAAAAGAGGA CATATATCCT CTTATTTCTG CTGCATTGTT CCAGAGTTTC 421 AATGTATTAT AAGTAGTTTG AAGTACTCCT GAAAACTTTG GATTTTCAGC TTCTATTTAG 481 GGTTTCATCA ACAGAAGTTA AGCTCTGTGC TTAGATGTAA ACTTGTTTTT CTTCAACTTA 541 TGCTATTTGG TATTTTGAAC ACTAATATTT GTGGTTCCAC TAGTTAGTCA ACTTGGCATT 601 AAACTAGCTG TGTTACATAC ATAAGTTGTA ACTTGTAAGT ATGAACTATG TCTAG Predicted gene structure (within gDNA segment 7540 to 4275): Exon 1 6598 6341 ( 258 n); cDNA 37 294 ( 258 n); score: 1.000 Intron 1 6340 5246 (1095 n); Pd: 0.976 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5245 4885 ( 361 n); cDNA 295 655 ( 361 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E308527+ 1.000 619 0.945 C PGS_C09HBa0168F14.1-1-_SGN-E308527+ (6598 6341,5245 4885) Alignment (genomic DNA sequence = upper lines): ACATGGACAT GTCAAATCCT GCCGTCTTTG TCAATGCTGA GTTCCTCAAG GAGCATGTAG 6539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATGGACAT GTCAAATCCT GCCGTCTTTG TCAATGCTGA GTTCCTCAAG GAGCATGTAG 96 GACGGAAGGT TCGAACAGTG GTTCAGGTTA TGCAATCTGA TGGTGATAAA GTCATTGGAA 6479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGGAAGGT TCGAACAGTG GTTCAGGTTA TGCAATCTGA TGGTGATAAA GTCATTGGAA 156 AATCCACGGA TGAAAAAGAA TTAGTTGTGA AAGGAAATCC ACCTAATGCT CTTTCAACTT 6419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCACGGA TGAAAAAGAA TTAGTTGTGA AAGGAAATCC ACCTAATGCT CTTTCAACTT 216 TTGTTGAAGT AATTGGTATA GCTGACACTA TCCAGTCTAT TGAAGCAGAA ATTTGGACCA 6359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGAAGT AATTGGTATA GCTGACACTA TCCAGTCTAT TGAAGCAGAA ATTTGGACCA 276 ATTTTGGTGA TACATTTGGT ATGTCTTGCT TATGTTATTC ATATATATAC ACTTGGCTTC 6299 |||||||||| |||||||| ATTTTGGTGA TACATTTG.. .......... .......... .......... .......... 294 TCCTATATCC GTTAATGCAT TTGAATGTCA ATTTGTACCA AATTTGTTTC ACTGGCAATC 6239 .......... .......... .......... .......... .......... .......... 294 AAATCCATGA TTTTATTACT TGTTGTTTCT TTTGCTTCAT TTACGTCTTT TTTGTCGTTT 6179 .......... .......... .......... .......... .......... .......... 294 TGCTACTGTT CTTCTCCTTT ATCTTTAGCA TTATTTTCTC ATTACTGTAT TTTCTTCCAT 6119 .......... .......... .......... .......... .......... .......... 294 ACTTGAGTTT GATATGTTAT ACTTGAACCG AGGGTCTATC ACAAATAGTC ACTCTATCTT 6059 .......... .......... .......... .......... .......... .......... 294 CACAAGGTAG TAAGACTATA TACACACCAC CCTCCCCAAA CTCCACTCGT GGAATTACAC 5999 .......... .......... .......... .......... .......... .......... 294 TGGGTTTGTT ATTGTTGTTT TGCCCTTCTT TATGTCTTGT TCTGCGTATT TTTTCAAGGT 5939 .......... .......... .......... .......... .......... .......... 294 CATTTTGTAA GTTGCGAATA TAGAACTGCC TAAGGCCAAT GAACCATATA GTCTTCATAC 5879 .......... .......... .......... .......... .......... .......... 294 TCATCACTGA AAAGGAAAAG GATGGTGTTC TTTGATAAAG TTCATAACCC TATAATTGAT 5819 .......... .......... .......... .......... .......... .......... 294 GATAACACTA TGAATATGCA AACTTTATGG TTATCATCTA CCAGAAACCT TAAGATCTAT 5759 .......... .......... .......... .......... .......... .......... 294 AGATATTCAA CAGATGAGTG GGTTGTAGTC AATTAAGTGA ACTGAATAAT AGATTGTAGA 5699 .......... .......... .......... .......... .......... .......... 294 GTTAAACATT ATTGTCCTTC CCAACTCGGC CAATTTTATC TTCATTCCTT CACTTCTCTG 5639 .......... .......... .......... .......... .......... .......... 294 AAATGTTTCT ATACAAATGG TGACTGGGGA GGGTAAAGTT TACGATGTCC CTGTTCTATA 5579 .......... .......... .......... .......... .......... .......... 294 TGAAATTCAA GGATTAAAAC AAAGGGAGAT TTGGTTAGTG CGACTTTTCA GGTTATGATA 5519 .......... .......... .......... .......... .......... .......... 294 TCTATATTTA CGGTAGTGTT CTACTTTGTT TACAATCCTA TCATCATGCG ATAGCTGTTT 5459 .......... .......... .......... .......... .......... .......... 294 TTATACTTGC TCTGTCAAAC ATATTCAAGA CCAATGTAGT CATCAATTAT GTCCAAACTG 5399 .......... .......... .......... .......... .......... .......... 294 CATTTATTTT TGACACATTG TATAAGCATT TCATGTTGCT TGTTAAACTT CTACTCATGA 5339 .......... .......... .......... .......... .......... .......... 294 CTTAAGGTTT ATAGAAACTT TATGATGTGT ATCTAGTGCT TGTCTCTTGA TGATATATAC 5279 .......... .......... .......... .......... .......... .......... 294 TTGCTAATCT ACAAGTTCTT CAATATGTGA CAGATGTTAA TAGCTATGAC AAGGTGTGCA 5219 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATGTTAA TAGCTATGAC AAGGTGTGCA 321 GACTAGCAAA TGGTGACAGT AAGCACTTGT TTATCTGAGA AATGATTTAT AAAAGAGGAC 5159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTAGCAAA TGGTGACAGT AAGCACTTGT TTATCTGAGA AATGATTTAT AAAAGAGGAC 381 ATATATCCTC TTATTTCTGC TGCATTGTTC CAGAGTTTCA ATGTATTATA AGTAGTTTGA 5099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATCCTC TTATTTCTGC TGCATTGTTC CAGAGTTTCA ATGTATTATA AGTAGTTTGA 441 AGTACTCCTG AAAACTTTGG ATTTTCAGCT TCTATTTAGG GTTTCATCAA CAGAAGTTAA 5039 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACTCCTG AAAACTTTGG ATTTTCAGCT TCTATTTAGG GTTTCATCAA CAGAAGTTAA 501 GCTCTGTGCT TAGATGTAAA CTTGTTTTTC TTCAACTTAT GCTATTTGGT ATTTTGAACA 4979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTGTGCT TAGATGTAAA CTTGTTTTTC TTCAACTTAT GCTATTTGGT ATTTTGAACA 561 CTAATATTTG TGGTTCCACT AGTTAGTCAA CTTGGCATTA AACTAGCTGT GTTACATACA 4919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAATATTTG TGGTTCCACT AGTTAGTCAA CTTGGCATTA AACTAGCTGT GTTACATACA 621 TAAGTTGTAA CTTGTAAGTA TGAACTATGT CTAG 4885 |||||||||| |||||||||| |||||||||| |||| TAAGTTGTAA CTTGTAAGTA TGAACTATGT CTAG 655 hqPGS_C09HBa0168F14.1-1-_SGN-E308527+ (6598 6341,5245 4885) ******************************************************************************** EST sequence 55 +strand 577 n (File: SGN-E318688+) 1 ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT AGGACGGAAG 61 GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG AAAATCCACG 121 GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC TTTTGTTGAA 181 GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC CAATTTTGGT 241 GATACATTTG ATGTTAATAG CTATGACAAG GTGTGCAGAC TAGCAAATGG TGACAGTGAG 301 CACTTGTTTA TCTGAGAAAT GATTTATAAA AGAGGACATA TATCCTCTTA TTTCTGCTGC 361 ATTGTTCCAG AGTGTCAATG TATTATAAGT AGTTTGAAGT ACTCCTGAAA ACTTTGGATT 421 TTCAGCTTCT ATTTAGGGTT TCATCAACAG AAGGTAAGCT CTGTGCTTAG ATGTAAACTT 481 GATTTTCTTC AACTGATGCT ATTTGGTATT TTGAACACTA ATATTTGTGG TTCCACTAGT 541 TAGTCAACTT GGCATTAAAC TAGCTGTGTT ACATACA Predicted gene structure (within gDNA segment 7190 to 4309): Exon 1 6590 6341 ( 250 n); cDNA 1 250 ( 250 n); score: 1.000 Intron 1 6340 5246 (1095 n); Pd: 0.976 (s: 1.00), Pa: 0.989 (s: 0.98) Exon 2 5245 4919 ( 327 n); cDNA 251 577 ( 327 n); score: 0.985 MATCH C09HBa0168F14.1-1- SGN-E318688+ 0.991 577 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E318688+ (6590 6341,5245 4919) Alignment (genomic DNA sequence = upper lines): ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT AGGACGGAAG 6531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT AGGACGGAAG 60 GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG AAAATCCACG 6471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG AAAATCCACG 120 GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC TTTTGTTGAA 6411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC TTTTGTTGAA 180 GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC CAATTTTGGT 6351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC CAATTTTGGT 240 GATACATTTG GTATGTCTTG CTTATGTTAT TCATATATAT ACACTTGGCT TCTCCTATAT 6291 |||||||||| GATACATTTG .......... .......... .......... .......... .......... 250 CCGTTAATGC ATTTGAATGT CAATTTGTAC CAAATTTGTT TCACTGGCAA TCAAATCCAT 6231 .......... .......... .......... .......... .......... .......... 250 GATTTTATTA CTTGTTGTTT CTTTTGCTTC ATTTACGTCT TTTTTGTCGT TTTGCTACTG 6171 .......... .......... .......... .......... .......... .......... 250 TTCTTCTCCT TTATCTTTAG CATTATTTTC TCATTACTGT ATTTTCTTCC ATACTTGAGT 6111 .......... .......... .......... .......... .......... .......... 250 TTGATATGTT ATACTTGAAC CGAGGGTCTA TCACAAATAG TCACTCTATC TTCACAAGGT 6051 .......... .......... .......... .......... .......... .......... 250 AGTAAGACTA TATACACACC ACCCTCCCCA AACTCCACTC GTGGAATTAC ACTGGGTTTG 5991 .......... .......... .......... .......... .......... .......... 250 TTATTGTTGT TTTGCCCTTC TTTATGTCTT GTTCTGCGTA TTTTTTCAAG GTCATTTTGT 5931 .......... .......... .......... .......... .......... .......... 250 AAGTTGCGAA TATAGAACTG CCTAAGGCCA ATGAACCATA TAGTCTTCAT ACTCATCACT 5871 .......... .......... .......... .......... .......... .......... 250 GAAAAGGAAA AGGATGGTGT TCTTTGATAA AGTTCATAAC CCTATAATTG ATGATAACAC 5811 .......... .......... .......... .......... .......... .......... 250 TATGAATATG CAAACTTTAT GGTTATCATC TACCAGAAAC CTTAAGATCT ATAGATATTC 5751 .......... .......... .......... .......... .......... .......... 250 AACAGATGAG TGGGTTGTAG TCAATTAAGT GAACTGAATA ATAGATTGTA GAGTTAAACA 5691 .......... .......... .......... .......... .......... .......... 250 TTATTGTCCT TCCCAACTCG GCCAATTTTA TCTTCATTCC TTCACTTCTC TGAAATGTTT 5631 .......... .......... .......... .......... .......... .......... 250 CTATACAAAT GGTGACTGGG GAGGGTAAAG TTTACGATGT CCCTGTTCTA TATGAAATTC 5571 .......... .......... .......... .......... .......... .......... 250 AAGGATTAAA ACAAAGGGAG ATTTGGTTAG TGCGACTTTT CAGGTTATGA TATCTATATT 5511 .......... .......... .......... .......... .......... .......... 250 TACGGTAGTG TTCTACTTTG TTTACAATCC TATCATCATG CGATAGCTGT TTTTATACTT 5451 .......... .......... .......... .......... .......... .......... 250 GCTCTGTCAA ACATATTCAA GACCAATGTA GTCATCAATT ATGTCCAAAC TGCATTTATT 5391 .......... .......... .......... .......... .......... .......... 250 TTTGACACAT TGTATAAGCA TTTCATGTTG CTTGTTAAAC TTCTACTCAT GACTTAAGGT 5331 .......... .......... .......... .......... .......... .......... 250 TTATAGAAAC TTTATGATGT GTATCTAGTG CTTGTCTCTT GATGATATAT ACTTGCTAAT 5271 .......... .......... .......... .......... .......... .......... 250 CTACAAGTTC TTCAATATGT GACAGATGTT AATAGCTATG ACAAGGTGTG CAGACTAGCA 5211 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATGTT AATAGCTATG ACAAGGTGTG CAGACTAGCA 285 AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG ACATATATCC 5151 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTGACA GTGAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG ACATATATCC 345 TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT GAAGTACTCC 5091 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TCTTATTTCT GCTGCATTGT TCCAGAGTGT CAATGTATTA TAAGTAGTTT GAAGTACTCC 405 TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGTTTCATC AACAGAAGTT AAGCTCTGTG 5031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGTTTCATC AACAGAAGGT AAGCTCTGTG 465 CTTAGATGTA AACTTGTTTT TCTTCAACTT ATGCTATTTG GTATTTTGAA CACTAATATT 4971 |||||||||| |||||| ||| ||||||||| |||||||||| |||||||||| |||||||||| CTTAGATGTA AACTTGATTT TCTTCAACTG ATGCTATTTG GTATTTTGAA CACTAATATT 525 TGTGGTTCCA CTAGTTAGTC AACTTGGCAT TAAACTAGCT GTGTTACATA CA 4919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGTGGTTCCA CTAGTTAGTC AACTTGGCAT TAAACTAGCT GTGTTACATA CA 577 hqPGS_C09HBa0168F14.1-1-_SGN-E318688+ (6590 6341,5245 4919) ******************************************************************************** EST sequence 53 +strand 588 n (File: SGN-E346024+) 1 AGACATGGAC ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT 61 AGGACGGAAG GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG 121 AAAATCCACG GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC 181 TTTTGTTGAA GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC 241 CAATTTTGGT GATACATTTG ATGTTAATAG CTATGACAAG GTGTGCAGAC TAGCAAATGG 301 TGACAGTAAG CACTTGTTTA TCTGAGAAAT GATTTATAAA AGAGGACATA TATCCTCTTA 361 TTTCTGCTGC ATTGTTCCAG AGTTTCAATG TATTATAAGT AGTTTGAAGT ACTCCTGAAA 421 ACTTTGGATT TTCAGCTTCT ATTTAGGGTT TCATCAACAG AAGTTAAGCT CTGTGCTTAG 481 ATGTAAACTT GTTTTTCTTC AACTTATGCC TATTTGGTAT TTTGAACACT AATATTTTGT 541 GGTTCCACTA GTTAGTCAAC TTGGCATTAA ACTAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 7200 to 4184): Exon 1 6600 6341 ( 260 n); cDNA 1 260 ( 260 n); score: 1.000 Intron 1 6340 5246 (1095 n); Pd: 0.976 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5245 4934 ( 312 n); cDNA 261 574 ( 314 n); score: 0.984 PPA cDNA 575 588 MATCH C09HBa0168F14.1-1- SGN-E346024+ 0.991 572 0.973 C PGS_C09HBa0168F14.1-1-_SGN-E346024+ (6600 6341,5245 4934) Alignment (genomic DNA sequence = upper lines): AGACATGGAC ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT 6541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATGGAC ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT 60 AGGACGGAAG GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG 6481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACGGAAG GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG 120 AAAATCCACG GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC 6421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCACG GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC 180 TTTTGTTGAA GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC 6361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTTGAA GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC 240 CAATTTTGGT GATACATTTG GTATGTCTTG CTTATGTTAT TCATATATAT ACACTTGGCT 6301 |||||||||| |||||||||| CAATTTTGGT GATACATTTG .......... .......... .......... .......... 260 TCTCCTATAT CCGTTAATGC ATTTGAATGT CAATTTGTAC CAAATTTGTT TCACTGGCAA 6241 .......... .......... .......... .......... .......... .......... 260 TCAAATCCAT GATTTTATTA CTTGTTGTTT CTTTTGCTTC ATTTACGTCT TTTTTGTCGT 6181 .......... .......... .......... .......... .......... .......... 260 TTTGCTACTG TTCTTCTCCT TTATCTTTAG CATTATTTTC TCATTACTGT ATTTTCTTCC 6121 .......... .......... .......... .......... .......... .......... 260 ATACTTGAGT TTGATATGTT ATACTTGAAC CGAGGGTCTA TCACAAATAG TCACTCTATC 6061 .......... .......... .......... .......... .......... .......... 260 TTCACAAGGT AGTAAGACTA TATACACACC ACCCTCCCCA AACTCCACTC GTGGAATTAC 6001 .......... .......... .......... .......... .......... .......... 260 ACTGGGTTTG TTATTGTTGT TTTGCCCTTC TTTATGTCTT GTTCTGCGTA TTTTTTCAAG 5941 .......... .......... .......... .......... .......... .......... 260 GTCATTTTGT AAGTTGCGAA TATAGAACTG CCTAAGGCCA ATGAACCATA TAGTCTTCAT 5881 .......... .......... .......... .......... .......... .......... 260 ACTCATCACT GAAAAGGAAA AGGATGGTGT TCTTTGATAA AGTTCATAAC CCTATAATTG 5821 .......... .......... .......... .......... .......... .......... 260 ATGATAACAC TATGAATATG CAAACTTTAT GGTTATCATC TACCAGAAAC CTTAAGATCT 5761 .......... .......... .......... .......... .......... .......... 260 ATAGATATTC AACAGATGAG TGGGTTGTAG TCAATTAAGT GAACTGAATA ATAGATTGTA 5701 .......... .......... .......... .......... .......... .......... 260 GAGTTAAACA TTATTGTCCT TCCCAACTCG GCCAATTTTA TCTTCATTCC TTCACTTCTC 5641 .......... .......... .......... .......... .......... .......... 260 TGAAATGTTT CTATACAAAT GGTGACTGGG GAGGGTAAAG TTTACGATGT CCCTGTTCTA 5581 .......... .......... .......... .......... .......... .......... 260 TATGAAATTC AAGGATTAAA ACAAAGGGAG ATTTGGTTAG TGCGACTTTT CAGGTTATGA 5521 .......... .......... .......... .......... .......... .......... 260 TATCTATATT TACGGTAGTG TTCTACTTTG TTTACAATCC TATCATCATG CGATAGCTGT 5461 .......... .......... .......... .......... .......... .......... 260 TTTTATACTT GCTCTGTCAA ACATATTCAA GACCAATGTA GTCATCAATT ATGTCCAAAC 5401 .......... .......... .......... .......... .......... .......... 260 TGCATTTATT TTTGACACAT TGTATAAGCA TTTCATGTTG CTTGTTAAAC TTCTACTCAT 5341 .......... .......... .......... .......... .......... .......... 260 GACTTAAGGT TTATAGAAAC TTTATGATGT GTATCTAGTG CTTGTCTCTT GATGATATAT 5281 .......... .......... .......... .......... .......... .......... 260 ACTTGCTAAT CTACAAGTTC TTCAATATGT GACAGATGTT AATAGCTATG ACAAGGTGTG 5221 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATGTT AATAGCTATG ACAAGGTGTG 285 CAGACTAGCA AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG 5161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACTAGCA AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG 345 ACATATATCC TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT 5101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATATATCC TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT 405 GAAGTACTCC TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGTTTCATC AACAGAAGTT 5041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTACTCC TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGTTTCATC AACAGAAGTT 465 AAGCTCTGTG CTTAGATGTA AACTTGTTTT TCTTCAACTT ATG-CTATTT GGTATTTTGA 4982 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AAGCTCTGTG CTTAGATGTA AACTTGTTTT TCTTCAACTT ATGCCTATTT GGTATTTTGA 525 ACACTAATA- TTTGTGGTTC CACTAGTTAG TCAACTTGGC ATTAAACTA 4934 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACACTAATAT TTTGTGGTTC CACTAGTTAG TCAACTTGGC ATTAAACTA 574 hqPGS_C09HBa0168F14.1-1-_SGN-E346024+ (6600 6341,5245 4934) ******************************************************************************** EST sequence 36 +strand 538 n (File: SGN-E309277+) 1 AGAGACATGG ACATGTCAAA TCCTGCCGTC TTTGTCAATG CTGAGTTCCT CAAGGAGCAT 61 GTAGGACGGA AGGTTCGAAC AGTGGTTCAG GTTATGCAAT CTGATGGTGA TAAAGTCATT 121 GGAAAATCCA CGGATGAAAA AGAATTAGTT GTGAAAGGAA ATCCACCTAA TGCTCTTTCA 181 ACTTTTGTTG AAGTAATTGG TATAGCTGAC ACTATCCAGT CTATTGAAGC AGAAATTTGG 241 ACCAATTTTG GTGATACATT TGATGTTAAT AGCTATGACA AGGTGTGCAG ACTAGCAAAT 301 GGTGACAGTA AGCACTTGTT TATCTGAGAA ATGATTTATA AAAGAGGACA TATATCCTCT 361 TATTTCTGCT GCATTGTTCC AGAGTTTCAA TGTATTATAA GTAGTTTGAA GTACTCCTGA 421 AAACTTTGGA TTTTCAGCTT CTATTTAGGG TTTCATCAAC AGAAGTTAAG CTCTGTGCTT 481 AGATGTAAAC TTGTTTTTCT TCAACTTATG CTATTTGGTA TTTTGAACAC TAATATTT Predicted gene structure (within gDNA segment 7220 to 4360): Exon 1 6600 6341 ( 260 n); cDNA 3 262 ( 260 n); score: 1.000 Intron 1 6340 5246 (1095 n); Pd: 0.976 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5245 4970 ( 276 n); cDNA 263 538 ( 276 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E309277+ 1.000 536 0.996 C PGS_C09HBa0168F14.1-1-_SGN-E309277+ (6600 6341,5245 4970) Alignment (genomic DNA sequence = upper lines): AGACATGGAC ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT 6541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATGGAC ATGTCAAATC CTGCCGTCTT TGTCAATGCT GAGTTCCTCA AGGAGCATGT 62 AGGACGGAAG GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG 6481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACGGAAG GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAGTCATTGG 122 AAAATCCACG GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC 6421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCACG GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC 182 TTTTGTTGAA GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC 6361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTTGAA GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC 242 CAATTTTGGT GATACATTTG GTATGTCTTG CTTATGTTAT TCATATATAT ACACTTGGCT 6301 |||||||||| |||||||||| CAATTTTGGT GATACATTTG .......... .......... .......... .......... 262 TCTCCTATAT CCGTTAATGC ATTTGAATGT CAATTTGTAC CAAATTTGTT TCACTGGCAA 6241 .......... .......... .......... .......... .......... .......... 262 TCAAATCCAT GATTTTATTA CTTGTTGTTT CTTTTGCTTC ATTTACGTCT TTTTTGTCGT 6181 .......... .......... .......... .......... .......... .......... 262 TTTGCTACTG TTCTTCTCCT TTATCTTTAG CATTATTTTC TCATTACTGT ATTTTCTTCC 6121 .......... .......... .......... .......... .......... .......... 262 ATACTTGAGT TTGATATGTT ATACTTGAAC CGAGGGTCTA TCACAAATAG TCACTCTATC 6061 .......... .......... .......... .......... .......... .......... 262 TTCACAAGGT AGTAAGACTA TATACACACC ACCCTCCCCA AACTCCACTC GTGGAATTAC 6001 .......... .......... .......... .......... .......... .......... 262 ACTGGGTTTG TTATTGTTGT TTTGCCCTTC TTTATGTCTT GTTCTGCGTA TTTTTTCAAG 5941 .......... .......... .......... .......... .......... .......... 262 GTCATTTTGT AAGTTGCGAA TATAGAACTG CCTAAGGCCA ATGAACCATA TAGTCTTCAT 5881 .......... .......... .......... .......... .......... .......... 262 ACTCATCACT GAAAAGGAAA AGGATGGTGT TCTTTGATAA AGTTCATAAC CCTATAATTG 5821 .......... .......... .......... .......... .......... .......... 262 ATGATAACAC TATGAATATG CAAACTTTAT GGTTATCATC TACCAGAAAC CTTAAGATCT 5761 .......... .......... .......... .......... .......... .......... 262 ATAGATATTC AACAGATGAG TGGGTTGTAG TCAATTAAGT GAACTGAATA ATAGATTGTA 5701 .......... .......... .......... .......... .......... .......... 262 GAGTTAAACA TTATTGTCCT TCCCAACTCG GCCAATTTTA TCTTCATTCC TTCACTTCTC 5641 .......... .......... .......... .......... .......... .......... 262 TGAAATGTTT CTATACAAAT GGTGACTGGG GAGGGTAAAG TTTACGATGT CCCTGTTCTA 5581 .......... .......... .......... .......... .......... .......... 262 TATGAAATTC AAGGATTAAA ACAAAGGGAG ATTTGGTTAG TGCGACTTTT CAGGTTATGA 5521 .......... .......... .......... .......... .......... .......... 262 TATCTATATT TACGGTAGTG TTCTACTTTG TTTACAATCC TATCATCATG CGATAGCTGT 5461 .......... .......... .......... .......... .......... .......... 262 TTTTATACTT GCTCTGTCAA ACATATTCAA GACCAATGTA GTCATCAATT ATGTCCAAAC 5401 .......... .......... .......... .......... .......... .......... 262 TGCATTTATT TTTGACACAT TGTATAAGCA TTTCATGTTG CTTGTTAAAC TTCTACTCAT 5341 .......... .......... .......... .......... .......... .......... 262 GACTTAAGGT TTATAGAAAC TTTATGATGT GTATCTAGTG CTTGTCTCTT GATGATATAT 5281 .......... .......... .......... .......... .......... .......... 262 ACTTGCTAAT CTACAAGTTC TTCAATATGT GACAGATGTT AATAGCTATG ACAAGGTGTG 5221 ||||| |||||||||| |||||||||| .......... .......... .......... .....ATGTT AATAGCTATG ACAAGGTGTG 287 CAGACTAGCA AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG 5161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACTAGCA AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG 347 ACATATATCC TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT 5101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATATATCC TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT 407 GAAGTACTCC TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGTTTCATC AACAGAAGTT 5041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTACTCC TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGTTTCATC AACAGAAGTT 467 AAGCTCTGTG CTTAGATGTA AACTTGTTTT TCTTCAACTT ATGCTATTTG GTATTTTGAA 4981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCTGTG CTTAGATGTA AACTTGTTTT TCTTCAACTT ATGCTATTTG GTATTTTGAA 527 CACTAATATT T 4970 |||||||||| | CACTAATATT T 538 hqPGS_C09HBa0168F14.1-1-_SGN-E309277+ (6600 6341,5245 4970) ******************************************************************************** EST sequence 29 +strand 531 n (File: SGN-E341807+) 1 CGTCAAATCC TGCCGTCTTT GTCAATGCTG AGTTCCTCAA GGAGCACTGT AGGACGGAAG 61 GTTCGAACAG TGGTTCAGGT TATGCAATCT GATGGTGATA AAAGTCATTG GAAAATCCAC 121 GGATGAAAAA GAATTAGTTG TGAAAGGAAA TCCACCTAAT GCTCTTTCAA CTTTTGTTGA 181 AGTAATTGGT ATAGCTGACA CTATCCAGTC TATTGAAGCA GAAATTTGGA CCAATTTTGG 241 TGATACATTT GATGTTAATA GCTATGACAA GGTGTGCAGA CTAGCAAATG GTGACAGTAA 301 GCACTTGTTT ATCTGAGAAA TGATTTATAA AAGAGGACAT ATATCCTCTT ATTTCTGCTG 361 CATTGTTCCA GAGTTTCAAT GTATTATAAG TAGTTTGAAG TACTCCTGAA AACTTTGGAT 421 TTTCAGCTTC TATTTAGGGG TTTCATCAAC CAGAGTTAAG CTCTGTGCTT AGATGTAAAC 481 TTGTTTTTCC TTCAACTTAT CCCTATTTGG TATTTTTGAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 7198 to 3979): Exon 1 6588 6341 ( 248 n); cDNA 2 251 ( 250 n); score: 0.980 Intron 1 6340 5246 (1095 n); Pd: 0.976 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 5245 4984 ( 262 n); cDNA 252 516 ( 265 n); score: 0.956 PPA cDNA 519 531 MATCH C09HBa0168F14.1-1- SGN-E341807+ 0.968 510 0.960 C PGS_C09HBa0168F14.1-1-_SGN-E341807+ (6588 6341,5245 4984) Alignment (genomic DNA sequence = upper lines): GTCAAATCCT GCCGTCTTTG TCAATGCTGA GTTCCTCAAG GAGCA-TGTA GGACGGAAGG 6530 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| GTCAAATCCT GCCGTCTTTG TCAATGCTGA GTTCCTCAAG GAGCACTGTA GGACGGAAGG 61 TTCGAACAGT GGTTCAGGTT ATGCAATCTG ATGGTGAT-A AAGTCATTGG AAAATCCACG 6471 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTCGAACAGT GGTTCAGGTT ATGCAATCTG ATGGTGATAA AAGTCATTGG AAAATCCACG 121 GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC TTTTGTTGAA 6411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAAAAAG AATTAGTTGT GAAAGGAAAT CCACCTAATG CTCTTTCAAC TTTTGTTGAA 181 GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC CAATTTTGGT 6351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATTGGTA TAGCTGACAC TATCCAGTCT ATTGAAGCAG AAATTTGGAC CAATTTTGGT 241 GATACATTTG GTATGTCTTG CTTATGTTAT TCATATATAT ACACTTGGCT TCTCCTATAT 6291 |||||||||| GATACATTTG .......... .......... .......... .......... .......... 251 CCGTTAATGC ATTTGAATGT CAATTTGTAC CAAATTTGTT TCACTGGCAA TCAAATCCAT 6231 .......... .......... .......... .......... .......... .......... 251 GATTTTATTA CTTGTTGTTT CTTTTGCTTC ATTTACGTCT TTTTTGTCGT TTTGCTACTG 6171 .......... .......... .......... .......... .......... .......... 251 TTCTTCTCCT TTATCTTTAG CATTATTTTC TCATTACTGT ATTTTCTTCC ATACTTGAGT 6111 .......... .......... .......... .......... .......... .......... 251 TTGATATGTT ATACTTGAAC CGAGGGTCTA TCACAAATAG TCACTCTATC TTCACAAGGT 6051 .......... .......... .......... .......... .......... .......... 251 AGTAAGACTA TATACACACC ACCCTCCCCA AACTCCACTC GTGGAATTAC ACTGGGTTTG 5991 .......... .......... .......... .......... .......... .......... 251 TTATTGTTGT TTTGCCCTTC TTTATGTCTT GTTCTGCGTA TTTTTTCAAG GTCATTTTGT 5931 .......... .......... .......... .......... .......... .......... 251 AAGTTGCGAA TATAGAACTG CCTAAGGCCA ATGAACCATA TAGTCTTCAT ACTCATCACT 5871 .......... .......... .......... .......... .......... .......... 251 GAAAAGGAAA AGGATGGTGT TCTTTGATAA AGTTCATAAC CCTATAATTG ATGATAACAC 5811 .......... .......... .......... .......... .......... .......... 251 TATGAATATG CAAACTTTAT GGTTATCATC TACCAGAAAC CTTAAGATCT ATAGATATTC 5751 .......... .......... .......... .......... .......... .......... 251 AACAGATGAG TGGGTTGTAG TCAATTAAGT GAACTGAATA ATAGATTGTA GAGTTAAACA 5691 .......... .......... .......... .......... .......... .......... 251 TTATTGTCCT TCCCAACTCG GCCAATTTTA TCTTCATTCC TTCACTTCTC TGAAATGTTT 5631 .......... .......... .......... .......... .......... .......... 251 CTATACAAAT GGTGACTGGG GAGGGTAAAG TTTACGATGT CCCTGTTCTA TATGAAATTC 5571 .......... .......... .......... .......... .......... .......... 251 AAGGATTAAA ACAAAGGGAG ATTTGGTTAG TGCGACTTTT CAGGTTATGA TATCTATATT 5511 .......... .......... .......... .......... .......... .......... 251 TACGGTAGTG TTCTACTTTG TTTACAATCC TATCATCATG CGATAGCTGT TTTTATACTT 5451 .......... .......... .......... .......... .......... .......... 251 GCTCTGTCAA ACATATTCAA GACCAATGTA GTCATCAATT ATGTCCAAAC TGCATTTATT 5391 .......... .......... .......... .......... .......... .......... 251 TTTGACACAT TGTATAAGCA TTTCATGTTG CTTGTTAAAC TTCTACTCAT GACTTAAGGT 5331 .......... .......... .......... .......... .......... .......... 251 TTATAGAAAC TTTATGATGT GTATCTAGTG CTTGTCTCTT GATGATATAT ACTTGCTAAT 5271 .......... .......... .......... .......... .......... .......... 251 CTACAAGTTC TTCAATATGT GACAGATGTT AATAGCTATG ACAAGGTGTG CAGACTAGCA 5211 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATGTT AATAGCTATG ACAAGGTGTG CAGACTAGCA 286 AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG ACATATATCC 5151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGTGACA GTAAGCACTT GTTTATCTGA GAAATGATTT ATAAAAGAGG ACATATATCC 346 TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT GAAGTACTCC 5091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTATTTCT GCTGCATTGT TCCAGAGTTT CAATGTATTA TAAGTAGTTT GAAGTACTCC 406 TGAAAACTTT GGATTTTCAG CTTCTATTTA -GGGTTTCAT CAACAGAAGT TAAGCTCTGT 5032 |||||||||| |||||||||| |||||||||| ||||||||| |||| ||| |||||||||| TGAAAACTTT GGATTTTCAG CTTCTATTTA GGGGTTTCAT CAACCAGAGT TAAGCTCTGT 466 GCTTAGATGT AAACTTGTTT TT-CTTCAAC TTAT-GCTAT TTGGTATTTT 4984 |||||||||| |||||||||| || ||||||| |||| |||| |||||||||| GCTTAGATGT AAACTTGTTT TTCCTTCAAC TTATCCCTAT TTGGTATTTT 516 hqPGS_C09HBa0168F14.1-1-_SGN-E341807+ (6588 6341,5245 4984) ******************************************************************************** EST sequence 15 +strand 588 n (File: SGN-E325549+) 1 GTTTGTGTGT TTACTGGTTT TGATTTTGAA CCCTTCAGTT TTGTTTTAAT AATGAGTTTT 61 TGTTTCCCGG TGTCTACCCA TAATTTTCTG TGTAGAGATT TCCCTGATTT ACATTTAATA 121 GTGTATCAAG TTGCTACACA AAATTGTGAT AAATAGATCT TTTCTTTTTT TTAATGATTT 181 GGGTTGTTAC ACTTTGTTCA TTTGTGTAAT TGGTTTTGTA CTTTCTGTAA TTATGGGTAA 241 TGAAAAATCA AGGTTCTTGG AAGTGTTTTG CAATTTTTTT TAAAAAAAAA ATCCTTGAAA 301 AAAATGCAGT CAATGGTAAA TTATGATTCC CAAATGATAT CTATGTCATT CTTTGAACAA 361 TGGAATCTAT TGAGGTAATG GTTTGATGTA AAATATGATG TTAGAAGTTT TAGCGGGTTA 421 GAATTGTTTA ATCTTGTTTA GTAGATGCGT ACTGTGCATG TTCGATGATG GATGTGATTG 481 TTTTTATATA AGCAACTGTT AATAGTATTG TCGTATTCTG ATTTTCGATG GTGTAAGAAA 541 CTTTAACTCA CAGGCTTCTG ATTTTGTGTC TTTTAAGTTT TAATTGCA Predicted gene structure (within gDNA segment 8135 to 6122): Exon 1 7535 6947 ( 589 n); cDNA 1 588 ( 588 n); score: 0.995 MATCH C09HBa0168F14.1-1- SGN-E325549+ 0.995 589 1.002 C PGS_C09HBa0168F14.1-1-_SGN-E325549+ (7535 6947) Alignment (genomic DNA sequence = upper lines): GTTTGTGTGT TTACTGGTTT TGATTTTGAA CCCTTCAGTT TTGTTTTAAT AATGAGTTTT 7476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTGTGT TTACTGGTTT TGATTTTGAA CCCTTCAGTT TTGTTTTAAT AATGAGTTTT 60 TGTTTCCCGG TGTCTACCCA TAATTTTCTG TGTAGAGATT TCCCTGATTT ACATTTAATA 7416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCCCGG TGTCTACCCA TAATTTTCTG TGTAGAGATT TCCCTGATTT ACATTTAATA 120 GTGTATCAAG TTGCTACACA AAATTGTGAT AAATAGATCT TTTCTTTTTT TTAATGATTT 7356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTATCAAG TTGCTACACA AAATTGTGAT AAATAGATCT TTTCTTTTTT TTAATGATTT 180 GGGTTGTTAC ACTTTGTTCA TTTGTGTAAT TGGTTTTGTA CTTTCTGTAA TTATGGGTAA 7296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTGTTAC ACTTTGTTCA TTTGTGTAAT TGGTTTTGTA CTTTCTGTAA TTATGGGTAA 240 TGAAAAATCA AGGTTCTTGG AAGTGTTTTG CAATTTTTTT TAAAAAAAAA ATCCTTGAAA 7236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAATCA AGGTTCTTGG AAGTGTTTTG CAATTTTTTT TAAAAAAAAA ATCCTTGAAA 300 AAAATGCAGT CAATGGTAAA TTATGATTCC CAAATGATAT CTATGTCATT CTTTGAACAA 7176 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGCAGT CAATGGTAAA TTATGATTCC CAAATGATAT CTATGTCATT CTTTGAACAA 360 TGGAATCTAT TGAGGTAATG GTTTGATGTA AAATATGATG TTAGAAGTTT TAGCGGGTTA 7116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATCTAT TGAGGTAATG GTTTGATGTA AAATATGATG TTAGAAGTTT TAGCGGGTTA 420 GAATTGTTTA ATCTTGTTTA GTAGATGCGT ACTGTGCATG TTCGATGATG GATGTGATTG 7056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTGTTTA ATCTTGTTTA GTAGATGCGT ACTGTGCATG TTCGATGATG GATGTGATTG 480 TTTTTATATA AGCAACTGTT AATAGTATTG TCGTATTCTG ATTTTCGATG GTGTAAGAAA 6996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTATATA AGCAACTGTT AATAGTATTG TCGTATTCTG ATTTTCGATG GTGTAAGAAA 540 CTTTAACTCA CAGGCTTCTG ATTTGTTGTC TTTTAAAGTT TTAATTGCA 6947 |||||||||| |||||||||| |||| |||| |||| ||||| ||||||||| CTTTAACTCA CAGGCTTCTG ATTTTGTGTC TTTT-AAGTT TTAATTGCA 588 hqPGS_C09HBa0168F14.1-1-_SGN-E325549+ (7535 6947) ******************************************************************************** EST sequence 9 -strand 817 n (File: SGN-E545742-) 1 GGGAACAAAC CTAAGGTATG GTTGCGTAAG TGTGAAAAAT ATTTTAACCT ATATAGAATT 61 GTGATAATCA GAAGGTAGAG GGAGCTGCAC TCTATTTGAA TGGACTTGAT ATAATTCACT 121 AGTTTTTGAT AGAAAAGTAG TTACTGAATT TAAGGAGGAA CTATGTGTGT GATTTGGGGA 181 AACAGTGGTT GAAGATACAG TCGAGGAATT TAATAAGCTA TCTCAAACAG GAACTGTAGA 241 TGAATTCCTT GGCAAGTTTG AAGACTTGAA AGCCCATATG ATAATAAGGA ATTCAGCCTT 301 GAATGAGGCT CATTTTCTGT CAAGTTTTAT TGGGTCTTTG AAAGAGGAAA TTAAGTTTGG 361 GGTCAAAATG TTTAAGTTGG TAACATTAAA AGCAACTATA GAGCAGGCTA GGCTACAGGA 421 GAAAGCAATA GAAGTGATGA AGAAGAAGAA GGGCTAAAAC TTTCTATTCG GTGGGAGAGT 481 CTAGCTCTAC AAAGAATGTT ATGGGAAGTA ATCTAATTAC TACGGTTGCC GGTGGTTCAA 541 AATGTTAGAC AATTGACATT TTTTTCCAGC TTATTATTAT TTTTACTGTT TTTACTTATT 601 TCAATTTAGT GCTTCCTATT TTTTAGTTAG ACGTAGTCAA CTTTAGTTAC TCAACTTTCT 661 GAAGTTAGTA TCCCCATTAT GGCTGTTAGT GGCCCCTTTT ATGGTAGTTA GTGGCACATG 721 TTCTTATTTA ATTTTAATGT TTATGTTTTT TCCTTGTATA AATTCAAACT TTCTGCAGAT 781 TAATATACAC AAGGAATTTC ATAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 17328 to 10183): Exon 1 15359 15346 ( 14 n); cDNA 480 493 ( 14 n); score: 0.643 Intron 1 15345 12746 (2600 n); Pd: 0.350 (s: 0), Pa: 0.993 (s: 0.46) Exon 2 12745 12698 ( 48 n); cDNA 494 542 ( 49 n); score: 0.458 Intron 2 12697 11299 (1399 n); Pd: 0.890 (s: 0.46), Pa: 0.000 (s: 0.90) Exon 3 11298 11048 ( 251 n); cDNA 543 804 ( 262 n); score: 0.819 PPA cDNA 805 817 MATCH C09HBa0168F14.1-1- SGN-E545742- 0.819 313 0.383 C PGS_C09HBa0168F14.1-1-_SGN-E545742- (15359 15346,12745 12698,11298 11048) Alignment (genomic DNA sequence = upper lines): TCAAGCTTTC GACAGTAACT GAAGGAAAAT TACTACTTGT TACAGATCCT CCCATCAATT 15300 || |||| | | | TCTAGCTCTA CAAA...... .......... .......... .......... .......... 493 CTTTTCGTGA AGGCAAACAA TGCAGAGTCC TGTGAAAGAA AGAAGTTCCA GTCACTTGCT 15240 .......... .......... .......... .......... .......... .......... 493 TTTGCTGATC TATCTGCGAC TATGGGAAAG AAGAAGTTGA AGTCATTTAT TCCTCAGTTG 15180 .......... .......... .......... .......... .......... .......... 493 GTACAGGCAA TATATTTTGG CACCTTACTC ACATTTAGCG CTGGAACGCT GCTTGTTTCA 15120 .......... .......... .......... .......... .......... .......... 493 AAAGGTTCAA TTGATTGCTC TGCCATGGTT TCTTTTGTGA CATCCCTGGT TCTTTTGATC 15060 .......... .......... .......... .......... .......... .......... 493 TCCCCAATCC AGGTTATGTT TCAATTATTG AAGGATTATG TTTCTGTAAG TTCATTTGTT 15000 .......... .......... .......... .......... .......... .......... 493 TGAAATTTGA TCTGTCTCGT ATATCTGAAA CAAGATAAAT AGGTTATATT ACTTCCATCC 14940 .......... .......... .......... .......... .......... .......... 493 CATGTGCACA ACACACTTCT AAACTAATTA TTTTCTTGAT CAACTTTGAC AAATTTCAAA 14880 .......... .......... .......... .......... .......... .......... 493 GAATCGAGAT TTGAACTTTA TGTGATGTTC TTCCCTTAAA CCAACTCCAC AAAGTAGAGG 14820 .......... .......... .......... .......... .......... .......... 493 TAAAGTCTGA CTACATTCTA CCCTCCCCGG ACCCCGCTTG TGGGGTTTCA CTGGCTATGT 14760 .......... .......... .......... .......... .......... .......... 493 TGTTGTTGTT GTCTTCCGTT AAACCAACTT TTGAATGACT ACTTTATATA TATTTTTTAT 14700 .......... .......... .......... .......... .......... .......... 493 ATTACTTCAA CTGTTGCAAT GCACATTGCT TCGAGTCTGG TATTACTTGA AAGAAAGAAG 14640 .......... .......... .......... .......... .......... .......... 493 CGTATTAAAG TAGGTTGTTA TTTTACTCTT TAAAAAATGA AAGCATATAG CAGTAGGTGT 14580 .......... .......... .......... .......... .......... .......... 493 TACCTGGGAG CCTGGACCCC ATACATGGCT TTGTTTTTGG GCGTTGGGAT AAGAATCAAG 14520 .......... .......... .......... .......... .......... .......... 493 CAGCACAACC TACAAGTACA ATTAATCATG AGATAGTTAC CTTATGAATT GCTGATCTAA 14460 .......... .......... .......... .......... .......... .......... 493 TAGTACCAAA TTATCCAGGT ACTTGAATTG AATGGCGTGT AACAAAGTTA GTCAGGAGGT 14400 .......... .......... .......... .......... .......... .......... 493 TGTCACATCA GAAGGCATCC ATAGGAAGTT TTGAATAAAA CTGTAAATCA CTCAAAACTT 14340 .......... .......... .......... .......... .......... .......... 493 TCCCTTAATA GAAGAAGCTT TTCTCGAGGC AGAGGCTTCA TAAATTTGAT CAACTTCTCG 14280 .......... .......... .......... .......... .......... .......... 493 ATCCCATTTA TATTGGAAGT GACTTACACT TTTATGTTAC CCTCTCCTCT TTTGACTATT 14220 .......... .......... .......... .......... .......... .......... 493 TTTTTTTTCT TGTTCGGTCG GACTTTTCTC ATACTGCTTC ATGTTGATAT TATGGTTTAG 14160 .......... .......... .......... .......... .......... .......... 493 CATGTGCAGC AATTTTAACT ATCAATCTGA ATCTAAGAGT TGTGCAGGAT GCGGGAAAAG 14100 .......... .......... .......... .......... .......... .......... 493 CATACAATGA ATTAAAACAA GGAGAGCCAG CAATTCAGCG CCTATTTAGT TTGAAAACAT 14040 .......... .......... .......... .......... .......... .......... 493 TTGAACCAGA GGTAAGTATA TAACTTGTTG ATTTCTATGA CTTTGGTAAT GGCATGTAAG 13980 .......... .......... .......... .......... .......... .......... 493 ATAGAGAGCG GCAGAACTAG AATTAGGTCT CTTCTTAAGT AACGATACAA AGTAATTTAG 13920 .......... .......... .......... .......... .......... .......... 493 TATAGCATTG TTGAACCTGA AACCAAAAAA CACATGCTGT CAGATTTAAG AGTCAAATAC 13860 .......... .......... .......... .......... .......... .......... 493 TTACAACCTG TGTTGTCTAA GGCTTATTTA AGGCGCGCTA GCCCTGAAAA GCTCAGGGAA 13800 .......... .......... .......... .......... .......... .......... 493 GGCGCTTTAA CTCGATTAGT TTTCAGTGTA GGCAAGGCAG TATGGTGTGC ACCTCATTGT 13740 .......... .......... .......... .......... .......... .......... 493 GCATGAGTTC TATCTTGAAT TAAGCGGGTA CTAAACAACA AATACAATAA GCACTAGTGT 13680 .......... .......... .......... .......... .......... .......... 493 CTTACTCCCT TCATTTCAGT TTATGAGTCT TAGTTTGTAT AGAATCGCTT CTTTTTGTAG 13620 .......... .......... .......... .......... .......... .......... 493 ATTCTTTACC TTTTGGTGTA TACACAGTCA GATTTTTTGC CATGTTTATG AATGAGATAC 13560 .......... .......... .......... .......... .......... .......... 493 ATTTACCTGA TAAATAAAAA AGAAAGAAAG AGGCGTTCCT TTTGAGATAT ACTAAAAGGA 13500 .......... .......... .......... .......... .......... .......... 493 AAATAAGAAA CTTAGGTTAA AACTAAGGGA GTAGTTGTTA AGGAAAATAG TTTGAATGAA 13440 .......... .......... .......... .......... .......... .......... 493 TTTGTTACTT TTCCTTGAAT TATGTATATA TTTCTAGTTT TTCTTCAATT GCGCCTTCTT 13380 .......... .......... .......... .......... .......... .......... 493 CTTCACTAAG ACCTACAGTT AAATCGGCGT TGCACTTAAA CCACAATCTA CCTAGAGCGC 13320 .......... .......... .......... .......... .......... .......... 493 TTTTTAGAGT TCTCACCTTT GATAACACTG CTTACAACTG CTTCCATTAA TATCATTATT 13260 .......... .......... .......... .......... .......... .......... 493 GCAAGCATAT AGTCATCATG TTTTATTTAT ATCATCATTC GACAACATAC CCGGTGTGAT 13200 .......... .......... .......... .......... .......... .......... 493 CCCATAAGTG GATTATGGGG AGGGTAGGAT GTAGGCGGAC CTTACCCCTA CCTTTGTGCA 13140 .......... .......... .......... .......... .......... .......... 493 GTGGAGAAGC TTTTTCCTGT AGACCTATGG CTCAAAAGTA GTGTAATCAA AGCAGGATTG 13080 .......... .......... .......... .......... .......... .......... 493 AAAGGACAAT AACAATAGCA AAATAACATT CATGTCATGA TTGGTGAAGG AAAAAAGGGA 13020 .......... .......... .......... .......... .......... .......... 493 TAGCACTCCA GTGGCTACCA ATTCAGTTCT ATCTATTTTT CATTATCTTC TTATAATTTA 12960 .......... .......... .......... .......... .......... .......... 493 GAAAGTCCGA TCTTATTAGG TAGTTGTTTT ACACTTTGCT TCTTTCATCT TCAACTTGGT 12900 .......... .......... .......... .......... .......... .......... 493 ATGATTGATT GATCTTCGCT AATATAAATT TCTTAAGTTC TTTCAATATA GGTTACTTCT 12840 .......... .......... .......... .......... .......... .......... 493 ATGTTGAACA TCCTTGCATT TAATATTGTT ATTTTAACTA CTTAGGATCA TGCAACCAAG 12780 .......... .......... .......... .......... .......... .......... 493 TGTGCCTGAA TACCTATGAT GTACAAATAT ACAGGAA-AT TGTGAACCCT GATGCTGTTG 12721 ||| | | || | || || | .......... .......... .......... ....GAATGT TATGGGAAGT AAT-CTAATT 518 ACTTAGATTG -TGTTGCTGG AGAAGTAAAA TACTCTAATG TCTCTTTTAG ATATGGAGAC 12662 ||| | ||| | || | | || ACTACGGTTG CCGGTGGTTC AAAA...... .......... .......... .......... 542 AATGGACCTC TTGTATTGAA AAACACGGAC TTACACATTA AATCTGGAGA AATAGTTGCT 12602 .......... .......... .......... .......... .......... .......... 542 CTCTGTGGAC CATCAGGAGG AGGAAAAACG ACTCTTGTAA AACTCCTTCT TCGCTTATAT 12542 .......... .......... .......... .......... .......... .......... 542 GATCCTTTAC AAGGTTAGCA GCTTAATCAC CACAAAACCA CAGTCTAGCA TTCTCTTTAG 12482 .......... .......... .......... .......... .......... .......... 542 CCCTGATCCT ATATGATGAA TATGAAAGTT GTCTTCTACT GAAGCATGAC TAGGTTTACT 12422 .......... .......... .......... .......... .......... .......... 542 TCCTCACTAA CAGGTTCCAT TCTCATTGAT GGTTTGGATA TTAGAGGCAT ACGAATCAAG 12362 .......... .......... .......... .......... .......... .......... 542 AGTTTAAGGA GAAACATTGG CTTGGTCTCT CAAGATACAG TAAGTCCAAA CCTCTTTCCC 12302 .......... .......... .......... .......... .......... .......... 542 TCTTTACAAC CATGATATGA TGAATTCTTT TGCCTTAATT ATTTCCACAT ACTGCTAACC 12242 .......... .......... .......... .......... .......... .......... 542 TTTATTAGTG GTTAGTTGTT GTAGTGTTCA GGACTTTTGA TGCTTATGCA TTTCACTTTC 12182 .......... .......... .......... .......... .......... .......... 542 AAATGGCAGA CAGTAGTTGT GTTAAGTTTT CTCCATTTTC TTTTGTTAAT GTGTATTATA 12122 .......... .......... .......... .......... .......... .......... 542 TTTGTTGGAG TTGGGGGTTG GGAATGGAGA CTCATTACCT GGTGATTGTT TATACTCTAC 12062 .......... .......... .......... .......... .......... .......... 542 TTCTTTGCGT GATCCTCTTG TTACATTCCA TAGAGCGGAG TATTTCACCT CAATCTACCA 12002 .......... .......... .......... .......... .......... .......... 542 TGTTCTATAC AATCAAAAAC TTCCATGTTC TAGAGGGCTA AGCTACATGA TATTTAACCA 11942 .......... .......... .......... .......... .......... .......... 542 GAATCACCTG GCAGTATGGG GTAAGCAGAT GATTGATATT CTCGTTGTGG ATGGCAAGAA 11882 .......... .......... .......... .......... .......... .......... 542 TTGGAGACAT AAATTATGTT AGAGCCAATA GAGGTTCAAT GATTAGTTTG TTGCTAAAAC 11822 .......... .......... .......... .......... .......... .......... 542 TGAGGTTTTT ACACTATAAG GATCTAGTTG AAGGAGAGAA ATTTTAGACA AATCGTCTAA 11762 .......... .......... .......... .......... .......... .......... 542 AGATTCTCCA AAGCAACAAT TTCCCATGGC TTTTTGACCC AAATTTGAAT TTTGTACTGC 11702 .......... .......... .......... .......... .......... .......... 542 AGTGTTTCAA AATTGGGGAC TGTTTCCTCT TTTTAAGTTT TAGTCCTTGA TTTTGCTCTA 11642 .......... .......... .......... .......... .......... .......... 542 ATATTTGTTT CATTTTCTTC TTTGTATCCG AGAAACATTA AGAAAAGTTA CCACATTAAG 11582 .......... .......... .......... .......... .......... .......... 542 TTTAGAAAAT CTTCTTAGCG AAGGGAGTGC TTCCAGGTTC TTTACCAATG GATGTTCCTC 11522 .......... .......... .......... .......... .......... .......... 542 AGGAACTAAT TGGGCATTGT AAGGATTACC TATGTTTCCT AATTATTTTG ATCCAGTCTA 11462 .......... .......... .......... .......... .......... .......... 542 TTTCTTGGAT ATCAATTGAT AGAAAGTTGA AATTCTTTCT AAGTTTGTAG ATATTTGGAT 11402 .......... .......... .......... .......... .......... .......... 542 ATGTAAATGT GTAATAGTGA AAACACTACA GTCCAACATC GGATAAAATA TAAATGTGCA 11342 .......... .......... .......... .......... .......... .......... 542 ATATACTTTG TGAAATCTGC TTATAAATAC TATGTGAAAA TATTGTTAGA CAATTGACA- 11283 ||||||| ||||||||| .......... .......... .......... .......... ...TGTTAGA CAATTGACAT 559 -TTTTTCCAG CTTATTATTA TTTTTACTGT TTTTACTTAT TTTAGTTTAG TGCTTCCTAT 11224 ||||||||| |||||||||| |||||||||| |||||||||| || | ||||| |||||||||| TTTTTTCCAG CTTATTATTA TTTTTACTGT TTTTACTTAT TTCAATTTAG TGCTTCCTAT 619 TTTCTAGCTA GACTTAGTCA ACTTTAGTTG CTCAACTTTC TGAAGTTAGT GGCGCGG--- 11167 ||| ||| || ||| |||||| ||||||||| |||||||||| |||||||||| | | TTTTTAGTTA GACGTAGTCA ACTTTAGTTA CTCAACTTTC TGAAGTTAGT ATCCCCATTA 679 T--CAG-T-G -GCCCCCTTT TATGGTAGTT AGTAGCACAT GTT-TTATTT AGTTTTAATG 11113 | | | | | | ||||||| |||||||||| ||| |||||| ||| |||||| | |||||||| TGGCTGTTAG TGGCCCCTTT TATGGTAGTT AGTGGCACAT GTTCTTATTT AATTTTAATG 739 TTTATGTTTT TTCCTTGTAT AAATTCCGAC TTTCTGCAGA TTAATATACA TAAGGAATTT 11053 |||||||||| |||||||||| |||||| || |||||||||| |||||||||| ||||||||| TTTATGTTTT TTCCTTGTAT AAATTCAAAC TTTCTGCAGA TTAATATACA CAAGGAATTT 799 CATAA 11048 ||||| CATAA 804 hqPGS_C09HBa0168F14.1-1-_SGN-E545742- (11298 11048) ******************************************************************************** EST sequence 56 +strand 277 n (File: SGN-E249673+) 1 TTTTATTAGA GAAGTCCAAC AATTTAATGA AGTGTTGCTT GTTCATTGTT CATCTGAGAA 61 CTAGCTAGCT GACATTTTCA CCAAGTCATT GCCAAAGGAA AGGTTTGAAG ATCCGAGGCA 121 AAGAATTAGT GTTTGCCACA AAAATGCCAA GGAGGAGTGT TAGACAATTG ACATTTTTTC 181 AGCTTATTAT TATTTTTACT ATTTTTTACT TATTTCAATT TAGTGCTTCC TATTTTCTAG 241 TAGACTTAGT CAACTTTAGT TGCTCAACTT TCTGAAG Predicted gene structure (within gDNA segment 13468 to 10569): Exon 1 11298 11179 ( 120 n); cDNA 158 277 ( 120 n); score: 0.938 MATCH C09HBa0168F14.1-1- SGN-E249673+ 0.938 120 0.433 C PGS_C09HBa0168F14.1-1-_SGN-E249673+ (11298 11179) Alignment (genomic DNA sequence = upper lines): TGTTAGACAA TTGACATTTT TCCAGCTTAT TATTATTTTT ACT-GTTTTT ACTTATTTTA 11240 |||||||||| |||||||||| | |||||||| |||||||||| ||| ||||| |||||||| | TGTTAGACAA TTGACATTTT TTCAGCTTAT TATTATTTTT ACTATTTTTT ACTTATTTCA 217 GTTTAGTGCT TCCTATTTTC TAGCTAGACT TAGTCAACTT TAGTTGCTCA ACTTTCTGAA 11180 ||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ATTTAGTGCT TCCTATTTTC TAG-TAGACT TAGTCAACTT TAGTTGCTCA ACTTTCTGAA 276 G 11179 | G 277 hqPGS_C09HBa0168F14.1-1-_SGN-E249673+ (11298 11179) ******************************************************************************** EST sequence 4 +strand 736 n (File: SGN-E553887+) 1 CCACGTTGCA ACAAGGACGT TTGGGATTGA TCCCAAGCGC ATGTCCCTTT TCCTCCTATG 61 GAATTGACCC AATTATGTTG GAAAAAAGGT GTTTGCCCAA AAGTGGCGAG GGAATTCAAA 121 ATTTAAGTTT TGGACGGATT TTGAACCCGA TTCCCATACG GTCTCCCCCA AAAAAAAAAA 181 CCCTAGTTTC CTCTCCTATA TAACATCTTT TTCTGTCATG GGGAGGTGAG ATTTTTTTGA 241 TTTGGTTTTT AGGCTGAGAA CAAAGAGGAA AAATTTTGAG AAGGATAAGG GATACAAATT 301 CTCATACTTA AAAAAACAAG GTATAATAAT AGCATTTGAA GAAGCACTCC ATCAGTTTGG 361 TTGAAAAGTC AAATGTGGTT TTTTTTTTGG TTATCTTCTG TGTCTGCACC TTTGTGTGGG 421 GGTAGTTGCT GTTCTTTTGT TCTTCGCCCC GTTCATTGCA TCACAAAAAA CATGTCAAGG 481 ACATGGGCAT TGGTCTTGTC ATGGATGATG ACAAAACAGT GCAACACAAG TTCAAGGTGC 541 TGGGGTGTTG ACAAGGCAAC TTGAACGTGC AAGTCTTATG TGCGGGCTAA GGGCATTGGC 601 AAGGCAGCGT GTTGGCTCAA CAAGGCAAGG TTGTGAAAAC TTGGAAATGG CAAGAATAAA 661 GGCAGTTCAC CCGAATTGAT AAAATAAAAC TAAGTGTTTG AGGACAGCTA AAATATTCTA 721 AGTGTTGAAA GCTGGC Predicted gene structure (within gDNA segment 10689 to 18628): Exon 1 14513 14533 ( 21 n); cDNA 430 448 ( 19 n); score: 0.714 Intron 1 14534 15220 ( 687 n); Pd: 0.000 (s: 0), Pa: 0.253 (s: 0) Exon 2 15221 15240 ( 20 n); cDNA 449 469 ( 21 n); score: 0.525 Intron 2 15241 17670 (2430 n); Pd: 0.856 (s: 0), Pa: 0.995 (s: 0.92) Exon 3 17671 17937 ( 267 n); cDNA 470 736 ( 267 n); score: 0.852 MATCH C09HBa0168F14.1-1+ SGN-E553887+ 0.852 308 0.418 C PGS_C09HBa0168F14.1-1+_SGN-E553887+ (14513 14533,15221 15240,17671 17937) Alignment (genomic DNA sequence = upper lines): TGTGCTGCTT GATTCTTATC CCAACGCCCA AAAACAAAGC CATGTATGGG GTCCAGGCTC 14572 ||| || || | ||||| | | TGTTCT-TTT G-TTCTTCGC C......... .......... .......... .......... 448 CCAGGTAACA CCTACTGCTA TATGCTTTCA TTTTTTAAAG AGTAAAATAA CAACCTACTT 14632 .......... .......... .......... .......... .......... .......... 448 TAATACGCTT CTTTCTTTCA AGTAATACCA GACTCGAAGC AATGTGCATT GCAACAGTTG 14692 .......... .......... .......... .......... .......... .......... 448 AAGTAATATA AAAAATATAT ATAAAGTAGT CATTCAAAAG TTGGTTTAAC GGAAGACAAC 14752 .......... .......... .......... .......... .......... .......... 448 AACAACAACA TAGCCAGTGA AACCCCACAA GCGGGGTCCG GGGAGGGTAG AATGTAGTCA 14812 .......... .......... .......... .......... .......... .......... 448 GACTTTACCT CTACTTTGTG GAGTTGGTTT AAGGGAAGAA CATCACATAA AGTTCAAATC 14872 .......... .......... .......... .......... .......... .......... 448 TCGATTCTTT GAAATTTGTC AAAGTTGATC AAGAAAATAA TTAGTTTAGA AGTGTGTTGT 14932 .......... .......... .......... .......... .......... .......... 448 GCACATGGGA TGGAAGTAAT ATAACCTATT TATCTTGTTT CAGATATACG AGACAGATCA 14992 .......... .......... .......... .......... .......... .......... 448 AATTTCAAAC AAATGAACTT ACAGAAACAT AATCCTTCAA TAATTGAAAC ATAACCTGGA 15052 .......... .......... .......... .......... .......... .......... 448 TTGGGGAGAT CAAAAGAACC AGGGATGTCA CAAAAGAAAC CATGGCAGAG CAATCAATTG 15112 .......... .......... .......... .......... .......... .......... 448 AACCTTTTGA AACAAGCAGC GTTCCAGCGC TAAATGTGAG TAAGGTGCCA AAATATATTG 15172 .......... .......... .......... .......... .......... .......... 448 CCTGTACCAA CTGAGGAATA AATGACTTCA ACTTCTTCTT TCCCATAGTC GCAGATAG-A 15231 | | || | | .......... .......... .......... .......... ........CC GTTCATTGCA 460 TCAGCAAAAG CAAGTGACTG GAACTTCTTT CTTTCACAGG ACTCTGCATT GTTTGCCTTC 15291 ||| |||| TCACAAAAA. .......... .......... .......... .......... .......... 469 ACGAAAAGAA TTGATGGGAG GATCTGTAAC AAGTAGTAAT TTTCCTTCAG TTACTGTCGA 15351 .......... .......... .......... .......... .......... .......... 469 AAGCTTGATT CTTTGAATAT AAGGAAGAGA GTAACATTAG AACAAAAAAG CTAGAAAGAA 15411 .......... .......... .......... .......... .......... .......... 469 GGGAGAAGGT AGAAGAAATT TTCTTTATGT GTTGGAATGT CCATGAGCAT ACATTCATTT 15471 .......... .......... .......... .......... .......... .......... 469 TGGAAAAACA AAAGCTATAC CAAACTTCAA AACTTAAGAA GACTAAGAAG CTATTGCGCT 15531 .......... .......... .......... .......... .......... .......... 469 TTGACTGAAA ATTTCATATT GGAATGAAAT GGCCTCGAAT TACACAATGG ATATAGAGAA 15591 .......... .......... .......... .......... .......... .......... 469 TTCATATGGT AAAAACCAAC TAGTTTTGGA TCAAAGCTAG TTGATTGATT CATTATATGC 15651 .......... .......... .......... .......... .......... .......... 469 TAATGTAACC AAAAACACTT ACCTCATTCA GATAGGAAGA GAGAGAAGCA GCAGCAAGAT 15711 .......... .......... .......... .......... .......... .......... 469 GTGCCTTGTT TGATACATCA CGAAGTTTTT CGCCCAAGTA ACCAATCACA AAACCCATCA 15771 .......... .......... .......... .......... .......... .......... 469 ATGGGATCAC CTTAAATAAC ACCCATCAAG ATTCGATATA AACTCATCCA ACATTCATAA 15831 .......... .......... .......... .......... .......... .......... 469 ATAATTCATA ATAATAGAAG CAAAGAACTA ATGCATCTTT AGTCACCAAG GCGGAAAGTA 15891 .......... .......... .......... .......... .......... .......... 469 ATGATAGAAC AGGGTTGATG ACCAACATCT GAACTGCCAT TGCTGATAAT TGAAGACTAC 15951 .......... .......... .......... .......... .......... .......... 469 TTGGAACAAT AGTCTGTAAA TAGCAAAACA CGAGATTTAG GAAGAGAAAA GAAAGAGTTT 16011 .......... .......... .......... .......... .......... .......... 469 GGTGAAGACA TAAAAGTAAA AGCATCAATT CTCTAACAGC TTAAATTTTT AGTGAAACAA 16071 .......... .......... .......... .......... .......... .......... 469 ATCATATCGT TCAGCATGGT ACTAATAGCA CTCATGAATT GGAGTCCAAT GAACTCTTCC 16131 .......... .......... .......... .......... .......... .......... 469 AAAATAGTAT TTCTATGTGC TTATCCAACA AAACGATCAC ACAAGTGAGG GACATCTTGC 16191 .......... .......... .......... .......... .......... .......... 469 AGACATAAAT AAGTATCTGA GATCGAATCT CATCGCCACT GAGGTCGAAC CTCTTCGCCG 16251 .......... .......... .......... .......... .......... .......... 469 GAAAATTATC CTACCACAAA GACAACAAAA CCAATTCTTT TTTGGTTATA TATAAGGTGA 16311 .......... .......... .......... .......... .......... .......... 469 ATCCTCTTGA CATAAGAGAA GGCTCTAGTC TAGTGTAGTG TTAAGGGGGT TCAAAAATCG 16371 .......... .......... .......... .......... .......... .......... 469 TTTTTTTAGA TCATAGGTTC ATATTTTATA TATGATATCC CACCCATCAA AACAAAATTT 16431 .......... .......... .......... .......... .......... .......... 469 CACATTCATG ATCCAAGAGA GTAATTACTT GCAAGCACAA CAAATAAATA TAAGGGTACC 16491 .......... .......... .......... .......... .......... .......... 469 CTTATAACCG TTAAAACGTT TCGATTATGC AGTTCACACA GTTCAACAAC ATATACAGAA 16551 .......... .......... .......... .......... .......... .......... 469 AACACAGATG ATCCATGAGC TTTGTCGTTG GGAGTAACAA CGCATCATTG TCTTAATGTG 16611 .......... .......... .......... .......... .......... .......... 469 GTTCATTCAA CATTATAAAA ATACACAAAA CTTTAGGCTC AAGGGCTTGT GTAGTAAGAA 16671 .......... .......... .......... .......... .......... .......... 469 ACTATGCTGC TCGGACTCTT CAAAGATATT GGTGGGTTTG TGTAGCATCA GCTATACATT 16731 .......... .......... .......... .......... .......... .......... 469 TTTGGAGATC TAACACAGGT GCAGCAACAT CTTTAGAGAG TTCGAGCAAC ATAGGTTAGC 16791 .......... .......... .......... .......... .......... .......... 469 ATCAGTTTCT CAACTCACAT TCAAGAGAGA ATAAACAGTA TCAGCAACAT CAGAAGCTTC 16851 .......... .......... .......... .......... .......... .......... 469 AGCAGTAATC CTATAAGCAA CATCTCCAGC AGCAATCCCT TTTTCTCCCT CAAAAAATCC 16911 .......... .......... .......... .......... .......... .......... 469 TAAATCTCTC TGCAAAACCT TATGGAAAAC ACAAATCCTC ATCTTATACA CGCAATTCAA 16971 .......... .......... .......... .......... .......... .......... 469 CGCAGCTTCC CATAGAAACG CTTGTTGCAG ATAATTACCA ACGAGTCGAA CGAAAAACAA 17031 .......... .......... .......... .......... .......... .......... 469 ACCTCCCAAA ACCAAACACT CCTCTCTCAG CCTCACAACA TCCAACGGAT TCATGAGAGA 17091 .......... .......... .......... .......... .......... .......... 469 CGAGAATTTT CCCACTTTGG GAACAATTTT GGACAGAGAG TAAACAGATA TTACACTACA 17151 .......... .......... .......... .......... .......... .......... 469 GAGCCATCCA CAGAGAATAG ATTTCCATTC CGAAAGGAGA TAAGGTTTAA GAGGAGCTAT 17211 .......... .......... .......... .......... .......... .......... 469 AGAGGTGAAC GGAGAAATGA ACTTGCCGGA GTTCGCAGCG GCGCGTGTAG ATGATGATTT 17271 .......... .......... .......... .......... .......... .......... 469 TACTTTTAAG GCAGAGGTGG AAATGGAGAA ATTGAAGATG ATGTTAGTGA TTGGTTTGGT 17331 .......... .......... .......... .......... .......... .......... 469 TACCTGGCGG GGGACTGTGA GTTTGTGGTG GCGAAGGGAC GGCGAACGGC CGTGAGACGG 17391 .......... .......... .......... .......... .......... .......... 469 CAGTTTCAGG TGAATTACGG ACATTTCCCG GTGATTAATT TAGGTATTTA CGTTTTTGGT 17451 .......... .......... .......... .......... .......... .......... 469 CCCTTAACAT CCATCCACTC TAATTTTGGT CCTTATAATA TATACTTAAT TAACTACATT 17511 .......... .......... .......... .......... .......... .......... 469 GAACCTACAA TTAAGAAATA TACAATTTTT GTCCTTCTAG TTGAGCATTG TCTTATTTAT 17571 .......... .......... .......... .......... .......... .......... 469 CCTTTCGACT TTCATAATAG TAGTCGTAGT ATTTATCTCG TAAGTTCTTG TTATTTGGTT 17631 .......... .......... .......... .......... .......... .......... 469 TTGTTAGACC CGCAATCTAC TTGATATAAC TACGTGCAGA CATGCCAAGG ACTTGGGCAT 17691 | |||| ||||| || ||||||| .......... .......... .......... .........A CATGTCAAGG ACATGGGCAT 490 TGGTCTTGGC ATGGATGATG GCAAAACAGT ACAACACAAG TTCAAGGTGC TTGGGTGTTG 17751 |||||||| | |||||||||| ||||||||| ||||||||| |||||||||| | |||||||| TGGTCTTGTC ATGGATGATG ACAAAACAGT GCAACACAAG TTCAAGGTGC TGGGGTGTTG 550 GCAAGGCAGC TTGAACGTGC ATGGATTACG TGCGGGCTAA AGGCGTTGGC AAGACAGCAT 17811 ||||||| | |||||||||| | | ||| | |||||||||| ||| ||||| ||| |||| | ACAAGGCAAC TTGAACGTGC AAGTCTTATG TGCGGGCTAA GGGCATTGGC AAGGCAGCGT 610 GTTGACTTGA TGAAGCAAGG CTGTGAAGAC TTGGCAAGGT CAAAGACAAA GGCAGTTCAC 17871 |||| || | | |||||| |||||| || |||| || | ||| | ||| |||||||||| GTTGGCTCAA CAAGGCAAGG TTGTGAAAAC TTGGAAATGG CAAGAATAAA GGCAGTTCAC 670 CCGAAATTGC CGAAATAAAA CTAAGTG-TG GAAGACAGCT AAAATATTCT AAGTGTTGGA 17930 ||| ||||| |||||||| ||||||| | || ||||||| |||||||||| |||||||| | CCG-AATTGA TAAAATAAAA CTAAGTGTTT GAGGACAGCT AAAATATTCT AAGTGTTGAA 729 AGCTGGC 17937 ||||||| AGCTGGC 736 hqPGS_C09HBa0168F14.1-1+_SGN-E553887+ (14513 14533,15221 15240,17671 17937) ******************************************************************************** EST sequence 44 -strand 791 n (File: SGN-E543846-) 1 TCTTTCCCTG ATTATAAATA ATACTACAAG CAGTTTGAGG ATGCCCTAAT AGATCATTGG 61 CATTAGTTTA AGGTTCCTAG CTCGGAATCT TTGGTCTGTC TGAGTCCTCA GTAACAGCTT 121 GGTTGTATAC ATTGAAATTT TGTGGACTGT TTCTGTTAGA CCCGCAATCT ACTTGATCTA 181 ACTACGTGCA GACATGCCAA GGACTTGGGC ATTGGTCTTG GCATGGATGA TGGCAAAACA 241 GTGCAACACA AGTTCAAGGT GCTTGGGTGT TGGCAAGGCA GCTTGAACGT GCATGGCTTA 301 CGTGCGGGCT AAGGGCGTTG ACAAGACAAC ATGTTGACTT GATGAAGCAA GGCTGTGAAG 361 ACTTGGCAAG GTCAAAGACA AAGGCAGTTC ACCCGAAATT GCTGAAATAA AACTAAGTGT 421 GGAAGACAGC TAAAATATTC TAAGTGTTGG AAGCTGGCAG GATTATTCTA AGTGTTGGAA 481 TGAAGCCTGA AATATTCTAA GTGTTAGAAT ATTAGTATTT CGTGTAGATA AGAATGTAAT 541 TTGAATTAGA TTCTATCTGT TGGAAATATA GTTGTTGGAA AGTTAGTTTT GAACCCTGGG 601 CTGACATGTG TCGGACAGGT GTCATGTGTA ACCGCTTGTA ACTGCCATTG TGCAGAATTT 661 TGATTTAAGG TGGAAATTCG TCTAAAGCAG AGGACAGAGA GTTTTCTAGC CTTAGACTGA 721 TTTGTGAAGT CTTCCTTTGT ATTAATTATT GATTAATAAA GGTTGAGACT TGGTCCTGTA 781 AAAAAAAAAA A Predicted gene structure (within gDNA segment 13909 to 21799): Exon 1 16009 16026 ( 18 n); cDNA 119 136 ( 18 n); score: 0.667 Intron 1 16027 17615 (1589 n); Pd: 0.976 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 17616 18264 ( 649 n); cDNA 137 782 ( 646 n); score: 0.958 MATCH C09HBa0168F14.1-1+ SGN-E543846- 0.958 667 0.843 C PGS_C09HBa0168F14.1-1+_SGN-E543846- (16009 16026,17616 18264) Alignment (genomic DNA sequence = upper lines): TTTGGTGAAG ACATAAAAGT AAAAGCATCA ATTCTCTAAC AGCTTAAATT TTTAGTGAAA 16068 || | || | |||| || TTGGTTGTAT ACATTGAA.. .......... .......... .......... .......... 136 CAAATCATAT CGTTCAGCAT GGTACTAATA GCACTCATGA ATTGGAGTCC AATGAACTCT 16128 .......... .......... .......... .......... .......... .......... 136 TCCAAAATAG TATTTCTATG TGCTTATCCA ACAAAACGAT CACACAAGTG AGGGACATCT 16188 .......... .......... .......... .......... .......... .......... 136 TGCAGACATA AATAAGTATC TGAGATCGAA TCTCATCGCC ACTGAGGTCG AACCTCTTCG 16248 .......... .......... .......... .......... .......... .......... 136 CCGGAAAATT ATCCTACCAC AAAGACAACA AAACCAATTC TTTTTTGGTT ATATATAAGG 16308 .......... .......... .......... .......... .......... .......... 136 TGAATCCTCT TGACATAAGA GAAGGCTCTA GTCTAGTGTA GTGTTAAGGG GGTTCAAAAA 16368 .......... .......... .......... .......... .......... .......... 136 TCGTTTTTTT AGATCATAGG TTCATATTTT ATATATGATA TCCCACCCAT CAAAACAAAA 16428 .......... .......... .......... .......... .......... .......... 136 TTTCACATTC ATGATCCAAG AGAGTAATTA CTTGCAAGCA CAACAAATAA ATATAAGGGT 16488 .......... .......... .......... .......... .......... .......... 136 ACCCTTATAA CCGTTAAAAC GTTTCGATTA TGCAGTTCAC ACAGTTCAAC AACATATACA 16548 .......... .......... .......... .......... .......... .......... 136 GAAAACACAG ATGATCCATG AGCTTTGTCG TTGGGAGTAA CAACGCATCA TTGTCTTAAT 16608 .......... .......... .......... .......... .......... .......... 136 GTGGTTCATT CAACATTATA AAAATACACA AAACTTTAGG CTCAAGGGCT TGTGTAGTAA 16668 .......... .......... .......... .......... .......... .......... 136 GAAACTATGC TGCTCGGACT CTTCAAAGAT ATTGGTGGGT TTGTGTAGCA TCAGCTATAC 16728 .......... .......... .......... .......... .......... .......... 136 ATTTTTGGAG ATCTAACACA GGTGCAGCAA CATCTTTAGA GAGTTCGAGC AACATAGGTT 16788 .......... .......... .......... .......... .......... .......... 136 AGCATCAGTT TCTCAACTCA CATTCAAGAG AGAATAAACA GTATCAGCAA CATCAGAAGC 16848 .......... .......... .......... .......... .......... .......... 136 TTCAGCAGTA ATCCTATAAG CAACATCTCC AGCAGCAATC CCTTTTTCTC CCTCAAAAAA 16908 .......... .......... .......... .......... .......... .......... 136 TCCTAAATCT CTCTGCAAAA CCTTATGGAA AACACAAATC CTCATCTTAT ACACGCAATT 16968 .......... .......... .......... .......... .......... .......... 136 CAACGCAGCT TCCCATAGAA ACGCTTGTTG CAGATAATTA CCAACGAGTC GAACGAAAAA 17028 .......... .......... .......... .......... .......... .......... 136 CAAACCTCCC AAAACCAAAC ACTCCTCTCT CAGCCTCACA ACATCCAACG GATTCATGAG 17088 .......... .......... .......... .......... .......... .......... 136 AGACGAGAAT TTTCCCACTT TGGGAACAAT TTTGGACAGA GAGTAAACAG ATATTACACT 17148 .......... .......... .......... .......... .......... .......... 136 ACAGAGCCAT CCACAGAGAA TAGATTTCCA TTCCGAAAGG AGATAAGGTT TAAGAGGAGC 17208 .......... .......... .......... .......... .......... .......... 136 TATAGAGGTG AACGGAGAAA TGAACTTGCC GGAGTTCGCA GCGGCGCGTG TAGATGATGA 17268 .......... .......... .......... .......... .......... .......... 136 TTTTACTTTT AAGGCAGAGG TGGAAATGGA GAAATTGAAG ATGATGTTAG TGATTGGTTT 17328 .......... .......... .......... .......... .......... .......... 136 GGTTACCTGG CGGGGGACTG TGAGTTTGTG GTGGCGAAGG GACGGCGAAC GGCCGTGAGA 17388 .......... .......... .......... .......... .......... .......... 136 CGGCAGTTTC AGGTGAATTA CGGACATTTC CCGGTGATTA ATTTAGGTAT TTACGTTTTT 17448 .......... .......... .......... .......... .......... .......... 136 GGTCCCTTAA CATCCATCCA CTCTAATTTT GGTCCTTATA ATATATACTT AATTAACTAC 17508 .......... .......... .......... .......... .......... .......... 136 ATTGAACCTA CAATTAAGAA ATATACAATT TTTGTCCTTC TAGTTGAGCA TTGTCTTATT 17568 .......... .......... .......... .......... .......... .......... 136 TATCCTTTCG ACTTTCATAA TAGTAGTCGT AGTATTTATC TCGTAAGTTC TTGTTATTTG 17628 | |||| || .......... .......... .......... .......... .......ATT TTGTGGACTG 149 GTTTTGTTAG ACCCGCAATC TACTTGATAT AACTACGTGC AGACATGCCA AGGACTTGGG 17688 || |||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTTCTGTTAG ACCCGCAATC TACTTGATCT AACTACGTGC AGACATGCCA AGGACTTGGG 209 CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTACAACAC AAGTTCAAGG TGCTTGGGTG 17748 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTGCAACAC AAGTTCAAGG TGCTTGGGTG 269 TTGGCAAGGC AGCTTGAACG TGCATGGATT ACGTGCGGGC TAAAGGCGTT GGCAAGACAG 17808 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| | ||||||| TTGGCAAGGC AGCTTGAACG TGCATGGCTT ACGTGCGGGC TAAGGGCGTT GACAAGACAA 329 CATGTTGACT TGATGAAGCA AGGCTGTGAA GACTTGGCAA GGTCAAAGAC AAAGGCAGTT 17868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTTGACT TGATGAAGCA AGGCTGTGAA GACTTGGCAA GGTCAAAGAC AAAGGCAGTT 389 CACCCGAAAT TGCCGAAATA AAACTAAGTG TGGAAGACAG CTAAAATATT CTAAGTGTTG 17928 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCCGAAAT TGCTGAAATA AAACTAAGTG TGGAAGACAG CTAAAATATT CTAAGTGTTG 449 GAAGCTGGCA GGATTATTCT AAGTGTTGGA ATGAAGCCTG AAATATTCTA AGTGTTAGAA 17988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTGGCA GGATTATTCT AAGTGTTGGA ATGAAGCCTG AAATATTCTA AGTGTTAGAA 509 TATTAGTATT TCGTGTAGAT AAGAATGTAA TTTGAATTAG ATTCTATCTG TTGGAAATAT 18048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAGTATT TCGTGTAGAT AAGAATGTAA TTTGAATTAG ATTCTATCTG TTGGAAATAT 569 AGCTGTTGGA AAGTTAGTTT TGAACTCTGG GCTGACATGT GTCGGACAGG TGTCATGTGT 18108 || ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AGTTGTTGGA AAGTTAGTTT TGAACCCTGG GCTGACATGT GTCGGACAGG TGTCATGTGT 629 AACCGCCGCA TGTAACTGCC ATTGTGCAGA ATTTTGATTT AAGGTGGAAA TTCGTCTAAG 18168 || |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AA---CCGCT TGTAACTGCC ATTGTGCAGA ATTTTGATTT AAGGTGGAAA TTCGTCTAAA 686 GCAGGGGACA GAGAGTTTTC TAGCCTTAGA CTGATTTGTG AAGCCTTCCT TTGTATTAAT 18228 |||| ||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GCAGAGGACA GAGAGTTTTC TAGCCTTAGA CTGATTTGTG AAGTCTTCCT TTGTATTAAT 746 TATCGATTAA TAAAGGTTGG GACTTGTTCC TGTAAA 18264 ||| |||||| ||||||||| |||||| ||| |||||| TATTGATTAA TAAAGGTTGA GACTTGGTCC TGTAAA 782 hqPGS_C09HBa0168F14.1-1+_SGN-E543846- (17616 18264) ******************************************************************************** EST sequence 7 +strand 784 n (File: SGN-E542260+) 1 GAAAAGTCTC TTCCAATGGA TTGTCAATTT CTCCTCAACA AGTGCTTTGT CTAATACATT 61 ACACCAAGTT TGAGAAAAAC AAGATCCAGC GGATGAAAAT ACAACAAAAA AAGAGGCAGC 121 GCTGGATTGT CAATTTCTCC TCAACAATAG CTCTCTCTAA TACATTAGAG CAAGTTGAAG 181 AAAATATACA TCAAGTTAAA AGTGGAAGGA AGAACGAGAG AACAAAGAAC AGACCTTTTT 241 TTAAATCTCC ATCTGTTAGA CTCGTAAATT ACTTGATCTA ATTACGTACA AACATGTCAA 301 GGACTTGGGC ATTGGTCTTG ACATGAATGA GGGCAAAACA GTGCAACACA GGTTCAAGGT 361 GTTTGGGTGT TGGCAAGGCA ACTTGAACAT GCAAGGCTTA AGTGCGGGCT AGAGTCATCG 421 GCAAGGCAGC GTGTTGGCTT GACAAGGCAA AACTGTGAAG ACTTGACGAT GGTAAGAACA 481 AAGGCATTCC ACGTAAATTG CTGAAATAAA ACCAAGTGTT GGAGGACAAC TAAAATATTC 541 TAAGTGTTGG AAGCTGGCTG AAATAATCTA AGTGTTGGAA TGTAGCCTGA AATATTCTAA 601 GTGTTAAAAT ATTAATATTT CGTGTGGATA AAGATGTAAT TTAAATTAGA GTCTATCTGT 661 TAGAAATATA TCTGTTGGAA ACTTAGTTTG AATCTTGTGA TGACNAGTGT CGGACATGTG 721 TCATTTGTAA CTGCCGCATG TAACTGCCAT GTGCAGAAAT TTTAATAGGG TGGAAAATTT 781 GTTT Predicted gene structure (within gDNA segment 12019 to 20375): Exon 1 13906 13931 ( 26 n); cDNA 141 166 ( 26 n); score: 0.673 Intron 1 13932 14008 ( 77 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 14009 14018 ( 10 n); cDNA 167 176 ( 10 n); score: 0.700 Intron 2 14019 15374 (1356 n); Pd: 0.900 (s: 0), Pa: 0.461 (s: 0.58) Exon 3 15375 15419 ( 45 n); cDNA 177 223 ( 47 n); score: 0.578 Intron 3 15420 15682 ( 263 n); Pd: 0.778 (s: 0.58), Pa: 0.993 (s: 0) Exon 4 15683 15696 ( 14 n); cDNA 224 236 ( 13 n); score: 0.571 Intron 4 15697 17615 (1919 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.70) Exon 5 17616 18163 ( 548 n); cDNA 237 782 ( 546 n); score: 0.827 MATCH C09HBa0168F14.1-1+ SGN-E542260+ 0.827 643 0.820 C PGS_C09HBa0168F14.1-1+_SGN-E542260+ (13906 13931,14009 14018,15375 15419,15683 15696,17616 18163) Alignment (genomic DNA sequence = upper lines): TCAACAAT-G CTATACTAAA TTACTTTGTA TCGTTACTTA AGAAGAGACC TAATTCTAGT 13964 |||||||| | || | || | ||| || TCAACAATAG CTCT-CTCTA ATACATT... .......... .......... .......... 166 TCTGCCGCTC TCTATCTTAC ATGCCATTAC CAAAGTCATA GAAATCAACA AGTTATATAC 14024 | || |||| .......... .......... .......... .......... ....AGAGCA AGTT...... 176 TTACCTCTGG TTCAAATGTT TTCAAACTAA ATAGGCGCTG AATTGCTGGC TCTCCTTGTT 14084 .......... .......... .......... .......... .......... .......... 176 TTAATTCATT GTATGCTTTT CCCGCATCCT GCACAACTCT TAGATTCAGA TTGATAGTTA 14144 .......... .......... .......... .......... .......... .......... 176 AAATTGCTGC ACATGCTAAA CCATAATATC AACATGAAGC AGTATGAGAA AAGTCCGACC 14204 .......... .......... .......... .......... .......... .......... 176 GAACAAGAAA AAAAAAATAG TCAAAAGAGG AGAGGGTAAC ATAAAAGTGT AAGTCACTTC 14264 .......... .......... .......... .......... .......... .......... 176 CAATATAAAT GGGATCGAGA AGTTGATCAA ATTTATGAAG CCTCTGCCTC GAGAAAAGCT 14324 .......... .......... .......... .......... .......... .......... 176 TCTTCTATTA AGGGAAAGTT TTGAGTGATT TACAGTTTTA TTCAAAACTT CCTATGGATG 14384 .......... .......... .......... .......... .......... .......... 176 CCTTCTGATG TGACAACCTC CTGACTAACT TTGTTACACG CCATTCAATT CAAGTACCTG 14444 .......... .......... .......... .......... .......... .......... 176 GATAATTTGG TACTATTAGA TCAGCAATTC ATAAGGTAAC TATCTCATGA TTAATTGTAC 14504 .......... .......... .......... .......... .......... .......... 176 TTGTAGGTTG TGCTGCTTGA TTCTTATCCC AACGCCCAAA AACAAAGCCA TGTATGGGGT 14564 .......... .......... .......... .......... .......... .......... 176 CCAGGCTCCC AGGTAACACC TACTGCTATA TGCTTTCATT TTTTAAAGAG TAAAATAACA 14624 .......... .......... .......... .......... .......... .......... 176 ACCTACTTTA ATACGCTTCT TTCTTTCAAG TAATACCAGA CTCGAAGCAA TGTGCATTGC 14684 .......... .......... .......... .......... .......... .......... 176 AACAGTTGAA GTAATATAAA AAATATATAT AAAGTAGTCA TTCAAAAGTT GGTTTAACGG 14744 .......... .......... .......... .......... .......... .......... 176 AAGACAACAA CAACAACATA GCCAGTGAAA CCCCACAAGC GGGGTCCGGG GAGGGTAGAA 14804 .......... .......... .......... .......... .......... .......... 176 TGTAGTCAGA CTTTACCTCT ACTTTGTGGA GTTGGTTTAA GGGAAGAACA TCACATAAAG 14864 .......... .......... .......... .......... .......... .......... 176 TTCAAATCTC GATTCTTTGA AATTTGTCAA AGTTGATCAA GAAAATAATT AGTTTAGAAG 14924 .......... .......... .......... .......... .......... .......... 176 TGTGTTGTGC ACATGGGATG GAAGTAATAT AACCTATTTA TCTTGTTTCA GATATACGAG 14984 .......... .......... .......... .......... .......... .......... 176 ACAGATCAAA TTTCAAACAA ATGAACTTAC AGAAACATAA TCCTTCAATA ATTGAAACAT 15044 .......... .......... .......... .......... .......... .......... 176 AACCTGGATT GGGGAGATCA AAAGAACCAG GGATGTCACA AAAGAAACCA TGGCAGAGCA 15104 .......... .......... .......... .......... .......... .......... 176 ATCAATTGAA CCTTTTGAAA CAAGCAGCGT TCCAGCGCTA AATGTGAGTA AGGTGCCAAA 15164 .......... .......... .......... .......... .......... .......... 176 ATATATTGCC TGTACCAACT GAGGAATAAA TGACTTCAAC TTCTTCTTTC CCATAGTCGC 15224 .......... .......... .......... .......... .......... .......... 176 AGATAGATCA GCAAAAGCAA GTGACTGGAA CTTCTTTCTT TCACAGGACT CTGCATTGTT 15284 .......... .......... .......... .......... .......... .......... 176 TGCCTTCACG AAAAGAATTG ATGGGAGGAT CTGTAACAAG TAGTAATTTT CCTTCAGTTA 15344 .......... .......... .......... .......... .......... .......... 176 CTGTCGAAAG CTTGATTCTT TGAATATAAG GAAGAGAGTA -ACATTAGAA CAAAAAAGCT 15403 ||||| | || |||| | |||| | .......... .......... .......... GAAGAAAATA TACATCAAGT TAAAAGTGGA 206 AGAAAGAA-G GGAGAAGGTA GAAGAAATTT TCTTTATGTG TTGGAATGTC CATGAGCATA 15462 || ||||| | ||||| AGGAAGAACG AGAGAAC... .......... .......... .......... .......... 223 CATTCATTTT GGAAAAACAA AAGCTATACC AAACTTCAAA ACTTAAGAAG ACTAAGAAGC 15522 .......... .......... .......... .......... .......... .......... 223 TATTGCGCTT TGACTGAAAA TTTCATATTG GAATGAAATG GCCTCGAATT ACACAATGGA 15582 .......... .......... .......... .......... .......... .......... 223 TATAGAGAAT TCATATGGTA AAAACCAACT AGTTTTGGAT CAAAGCTAGT TGATTGATTC 15642 .......... .......... .......... .......... .......... .......... 223 ATTATATGCT AATGTAACCA AAAACACTTA CCTCATTCAG ATAGGAAGAG AGAGAAGCAG 15702 | | ||| || | .......... .......... .......... .......... AAA-GAACAG ACCT...... 236 CAGCAAGATG TGCCTTGTTT GATACATCAC GAAGTTTTTC GCCCAAGTAA CCAATCACAA 15762 .......... .......... .......... .......... .......... .......... 236 AACCCATCAA TGGGATCACC TTAAATAACA CCCATCAAGA TTCGATATAA ACTCATCCAA 15822 .......... .......... .......... .......... .......... .......... 236 CATTCATAAA TAATTCATAA TAATAGAAGC AAAGAACTAA TGCATCTTTA GTCACCAAGG 15882 .......... .......... .......... .......... .......... .......... 236 CGGAAAGTAA TGATAGAACA GGGTTGATGA CCAACATCTG AACTGCCATT GCTGATAATT 15942 .......... .......... .......... .......... .......... .......... 236 GAAGACTACT TGGAACAATA GTCTGTAAAT AGCAAAACAC GAGATTTAGG AAGAGAAAAG 16002 .......... .......... .......... .......... .......... .......... 236 AAAGAGTTTG GTGAAGACAT AAAAGTAAAA GCATCAATTC TCTAACAGCT TAAATTTTTA 16062 .......... .......... .......... .......... .......... .......... 236 GTGAAACAAA TCATATCGTT CAGCATGGTA CTAATAGCAC TCATGAATTG GAGTCCAATG 16122 .......... .......... .......... .......... .......... .......... 236 AACTCTTCCA AAATAGTATT TCTATGTGCT TATCCAACAA AACGATCACA CAAGTGAGGG 16182 .......... .......... .......... .......... .......... .......... 236 ACATCTTGCA GACATAAATA AGTATCTGAG ATCGAATCTC ATCGCCACTG AGGTCGAACC 16242 .......... .......... .......... .......... .......... .......... 236 TCTTCGCCGG AAAATTATCC TACCACAAAG ACAACAAAAC CAATTCTTTT TTGGTTATAT 16302 .......... .......... .......... .......... .......... .......... 236 ATAAGGTGAA TCCTCTTGAC ATAAGAGAAG GCTCTAGTCT AGTGTAGTGT TAAGGGGGTT 16362 .......... .......... .......... .......... .......... .......... 236 CAAAAATCGT TTTTTTAGAT CATAGGTTCA TATTTTATAT ATGATATCCC ACCCATCAAA 16422 .......... .......... .......... .......... .......... .......... 236 ACAAAATTTC ACATTCATGA TCCAAGAGAG TAATTACTTG CAAGCACAAC AAATAAATAT 16482 .......... .......... .......... .......... .......... .......... 236 AAGGGTACCC TTATAACCGT TAAAACGTTT CGATTATGCA GTTCACACAG TTCAACAACA 16542 .......... .......... .......... .......... .......... .......... 236 TATACAGAAA ACACAGATGA TCCATGAGCT TTGTCGTTGG GAGTAACAAC GCATCATTGT 16602 .......... .......... .......... .......... .......... .......... 236 CTTAATGTGG TTCATTCAAC ATTATAAAAA TACACAAAAC TTTAGGCTCA AGGGCTTGTG 16662 .......... .......... .......... .......... .......... .......... 236 TAGTAAGAAA CTATGCTGCT CGGACTCTTC AAAGATATTG GTGGGTTTGT GTAGCATCAG 16722 .......... .......... .......... .......... .......... .......... 236 CTATACATTT TTGGAGATCT AACACAGGTG CAGCAACATC TTTAGAGAGT TCGAGCAACA 16782 .......... .......... .......... .......... .......... .......... 236 TAGGTTAGCA TCAGTTTCTC AACTCACATT CAAGAGAGAA TAAACAGTAT CAGCAACATC 16842 .......... .......... .......... .......... .......... .......... 236 AGAAGCTTCA GCAGTAATCC TATAAGCAAC ATCTCCAGCA GCAATCCCTT TTTCTCCCTC 16902 .......... .......... .......... .......... .......... .......... 236 AAAAAATCCT AAATCTCTCT GCAAAACCTT ATGGAAAACA CAAATCCTCA TCTTATACAC 16962 .......... .......... .......... .......... .......... .......... 236 GCAATTCAAC GCAGCTTCCC ATAGAAACGC TTGTTGCAGA TAATTACCAA CGAGTCGAAC 17022 .......... .......... .......... .......... .......... .......... 236 GAAAAACAAA CCTCCCAAAA CCAAACACTC CTCTCTCAGC CTCACAACAT CCAACGGATT 17082 .......... .......... .......... .......... .......... .......... 236 CATGAGAGAC GAGAATTTTC CCACTTTGGG AACAATTTTG GACAGAGAGT AAACAGATAT 17142 .......... .......... .......... .......... .......... .......... 236 TACACTACAG AGCCATCCAC AGAGAATAGA TTTCCATTCC GAAAGGAGAT AAGGTTTAAG 17202 .......... .......... .......... .......... .......... .......... 236 AGGAGCTATA GAGGTGAACG GAGAAATGAA CTTGCCGGAG TTCGCAGCGG CGCGTGTAGA 17262 .......... .......... .......... .......... .......... .......... 236 TGATGATTTT ACTTTTAAGG CAGAGGTGGA AATGGAGAAA TTGAAGATGA TGTTAGTGAT 17322 .......... .......... .......... .......... .......... .......... 236 TGGTTTGGTT ACCTGGCGGG GGACTGTGAG TTTGTGGTGG CGAAGGGACG GCGAACGGCC 17382 .......... .......... .......... .......... .......... .......... 236 GTGAGACGGC AGTTTCAGGT GAATTACGGA CATTTCCCGG TGATTAATTT AGGTATTTAC 17442 .......... .......... .......... .......... .......... .......... 236 GTTTTTGGTC CCTTAACATC CATCCACTCT AATTTTGGTC CTTATAATAT ATACTTAATT 17502 .......... .......... .......... .......... .......... .......... 236 AACTACATTG AACCTACAAT TAAGAAATAT ACAATTTTTG TCCTTCTAGT TGAGCATTGT 17562 .......... .......... .......... .......... .......... .......... 236 CTTATTTATC CTTTCGACTT TCATAATAGT AGTCGTAGTA TTTATCTCGT AAGTTCTTGT 17622 || || .......... .......... .......... .......... .......... ...TTTTTTA 243 TATTTGGTTT TGTTAGACCC GCAATCTACT TGATATAACT ACGTGCAGAC ATGCCAAGGA 17682 || | | |||||||| | | || |||| |||| ||| | |||| || || ||| |||||| AATCTCCATC TGTTAGACTC GTAAATTACT TGATCTAATT ACGTACAAAC ATGTCAAGGA 303 CTTGGGCATT GGTCTTGGCA TGGATGATGG CAAAACAGTA CAACACAAGT TCAAGGTGCT 17742 |||||||||| ||||||| || || |||| || ||||||||| ||||||| || |||||||| | CTTGGGCATT GGTCTTGACA TGAATGAGGG CAAAACAGTG CAACACAGGT TCAAGGTGTT 363 TGGGTGTTGG CAAGGCAGCT TGAACGTGCA TGGATTACGT GCGGGCTAAA GGCGTTGGCA 17802 |||||||||| ||||||| || ||||| |||| || ||| || |||||||| | | | | |||| TGGGTGTTGG CAAGGCAACT TGAACATGCA AGGCTTAAGT GCGGGCTAGA GTCATCGGCA 423 AGACAGCATG TTGACTTGAT GAAGCAAGGC TGTGAAGACT TGGCAAGGTC AAAGACAAAG 17862 || |||| || ||| ||||| | |||| | |||||||||| || | | | || |||||| AGGCAGCGTG TTGGCTTGAC AAGGCAAAAC TGTGAAGACT TGACGATGGT AAGAACAAAG 483 GCAGTTCACC CGAAATTGCC GAAATAAAAC TAAGTG-TGG AAGACAGCTA AAATATTCTA 17921 ||| ||| | ||||||| |||||||||| ||||| ||| | |||| ||| |||||||||| GCA-TTCCAC GTAAATTGCT GAAATAAAAC CAAGTGTTGG AGGACAACTA AAATATTCTA 542 AGTGTTGGAA GCTGGCAGGA TTATTCTAAG TGTTGGAATG AAGCCTGAAA TATTCTAAGT 17981 |||||||||| |||||| | | || |||||| |||||||||| ||||||||| |||||||||| AGTGTTGGAA GCTGGCTGAA ATAATCTAAG TGTTGGAATG TAGCCTGAAA TATTCTAAGT 602 GTTAGAATAT TAGTATTTCG TGTAGATAAG AATGTAATTT GAATTAGATT CTATCTGTTG 18041 |||| ||||| || ||||||| ||| ||||| ||||||||| ||||||| | ||||||||| GTTAAAATAT TAATATTTCG TGTGGATAAA GATGTAATTT AAATTAGAGT CTATCTGTTA 662 GAAATATAGC TGTTGGAAAG TTAGTTTTGA ACTCTGGGCT GACATGTGTC GGACAGGTGT 18101 |||||||| | ||||||||| |||| ||||| | || | | ||| ||||| ||||| |||| GAAATATATC TGTTGGAAAC TTAG-TTTGA ATCTTGTGAT GACNAGTGTC GGACATGTGT 721 CATGTGTAAC CGCCGCATGT AACTGCCATT GTGCAGAATT TTGATTTAAG GTGG-AAATT 18160 ||| |||||| ||||||||| |||||||| | |||||||| | || | || | |||| ||||| CATTTGTAAC TGCCGCATGT AACTGCCA-T GTGCAGAAAT TTTA-ATAGG GTGGAAAATT 779 CGT 18163 || TGT 782 hqPGS_C09HBa0168F14.1-1+_SGN-E542260+ (17616 18163) ******************************************************************************** EST sequence 1 +strand 662 n (File: SGN-E371397+) 1 CTCGTGCCGG CTTAATCCAA TCTTGGTAGC ATCCCTCATT CCTTGAGAAT GAATCTGTTT 61 GAGTATCAAG TCGAGAAACG AAAGGAGAAA TAGACAGCTT TTCTTTTCCA GGTCATCTTC 121 TTTTCTCATT GTTCTTTGGA TGTTCAACAA TTTATAGCAG GAGTAGACTG TCCTTTTTTA 181 CTTTCCACAT AGCTTATCTG TTTCATCCAT GCTTCCTCTG TTTAGAGTTT CCTCTTTCCC 241 TGATTATAAA TAATACTACA AGCAGTTTGA GGATGCCCTA ATAGATCATT GGCATTAGTT 301 TAAGGTTCCT AGCTCGGAAT CTTTGGTCTG TCTGAGTCCT CAGTAACAGC TTGGTTGTAT 361 ACATTGAAAT TTTGTGGACT GTTTCTGTTA GACCCGCAAT CTACTTGATC TAACTACGTG 421 CAGACATGCC AAGGACTTGG GCATTGGTCT TGGCATGGAT GATGGCAAAA CAGTGCAACA 481 CAAGTTCAAG GTGCTTGGGT GTTGGCAAGG CAGCTTGAAC GTGCATGGCT TACGTGCGGG 541 CTAAGGGCGT TGACAAGACA ACATGTTGAC TTGATGAAGC AAGGCTGTGA AGACTTGGCA 601 AGGTCAAAGA CAAAGGCAGT TCACCCGAAA TTGCTGGAAT AAAACTAAGT GTGGAAGACA 661 GC Predicted gene structure (within gDNA segment 13183 to 18519): Exon 1 16009 16026 ( 18 n); cDNA 351 368 ( 18 n); score: 0.667 Intron 1 16027 17615 (1589 n); Pd: 0.976 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 17616 17909 ( 294 n); cDNA 369 662 ( 294 n); score: 0.946 MATCH C09HBa0168F14.1-1+ SGN-E371397+ 0.946 312 0.471 C PGS_C09HBa0168F14.1-1+_SGN-E371397+ (16009 16026,17616 17909) Alignment (genomic DNA sequence = upper lines): TTTGGTGAAG ACATAAAAGT AAAAGCATCA ATTCTCTAAC AGCTTAAATT TTTAGTGAAA 16068 || | || | |||| || TTGGTTGTAT ACATTGAA.. .......... .......... .......... .......... 368 CAAATCATAT CGTTCAGCAT GGTACTAATA GCACTCATGA ATTGGAGTCC AATGAACTCT 16128 .......... .......... .......... .......... .......... .......... 368 TCCAAAATAG TATTTCTATG TGCTTATCCA ACAAAACGAT CACACAAGTG AGGGACATCT 16188 .......... .......... .......... .......... .......... .......... 368 TGCAGACATA AATAAGTATC TGAGATCGAA TCTCATCGCC ACTGAGGTCG AACCTCTTCG 16248 .......... .......... .......... .......... .......... .......... 368 CCGGAAAATT ATCCTACCAC AAAGACAACA AAACCAATTC TTTTTTGGTT ATATATAAGG 16308 .......... .......... .......... .......... .......... .......... 368 TGAATCCTCT TGACATAAGA GAAGGCTCTA GTCTAGTGTA GTGTTAAGGG GGTTCAAAAA 16368 .......... .......... .......... .......... .......... .......... 368 TCGTTTTTTT AGATCATAGG TTCATATTTT ATATATGATA TCCCACCCAT CAAAACAAAA 16428 .......... .......... .......... .......... .......... .......... 368 TTTCACATTC ATGATCCAAG AGAGTAATTA CTTGCAAGCA CAACAAATAA ATATAAGGGT 16488 .......... .......... .......... .......... .......... .......... 368 ACCCTTATAA CCGTTAAAAC GTTTCGATTA TGCAGTTCAC ACAGTTCAAC AACATATACA 16548 .......... .......... .......... .......... .......... .......... 368 GAAAACACAG ATGATCCATG AGCTTTGTCG TTGGGAGTAA CAACGCATCA TTGTCTTAAT 16608 .......... .......... .......... .......... .......... .......... 368 GTGGTTCATT CAACATTATA AAAATACACA AAACTTTAGG CTCAAGGGCT TGTGTAGTAA 16668 .......... .......... .......... .......... .......... .......... 368 GAAACTATGC TGCTCGGACT CTTCAAAGAT ATTGGTGGGT TTGTGTAGCA TCAGCTATAC 16728 .......... .......... .......... .......... .......... .......... 368 ATTTTTGGAG ATCTAACACA GGTGCAGCAA CATCTTTAGA GAGTTCGAGC AACATAGGTT 16788 .......... .......... .......... .......... .......... .......... 368 AGCATCAGTT TCTCAACTCA CATTCAAGAG AGAATAAACA GTATCAGCAA CATCAGAAGC 16848 .......... .......... .......... .......... .......... .......... 368 TTCAGCAGTA ATCCTATAAG CAACATCTCC AGCAGCAATC CCTTTTTCTC CCTCAAAAAA 16908 .......... .......... .......... .......... .......... .......... 368 TCCTAAATCT CTCTGCAAAA CCTTATGGAA AACACAAATC CTCATCTTAT ACACGCAATT 16968 .......... .......... .......... .......... .......... .......... 368 CAACGCAGCT TCCCATAGAA ACGCTTGTTG CAGATAATTA CCAACGAGTC GAACGAAAAA 17028 .......... .......... .......... .......... .......... .......... 368 CAAACCTCCC AAAACCAAAC ACTCCTCTCT CAGCCTCACA ACATCCAACG GATTCATGAG 17088 .......... .......... .......... .......... .......... .......... 368 AGACGAGAAT TTTCCCACTT TGGGAACAAT TTTGGACAGA GAGTAAACAG ATATTACACT 17148 .......... .......... .......... .......... .......... .......... 368 ACAGAGCCAT CCACAGAGAA TAGATTTCCA TTCCGAAAGG AGATAAGGTT TAAGAGGAGC 17208 .......... .......... .......... .......... .......... .......... 368 TATAGAGGTG AACGGAGAAA TGAACTTGCC GGAGTTCGCA GCGGCGCGTG TAGATGATGA 17268 .......... .......... .......... .......... .......... .......... 368 TTTTACTTTT AAGGCAGAGG TGGAAATGGA GAAATTGAAG ATGATGTTAG TGATTGGTTT 17328 .......... .......... .......... .......... .......... .......... 368 GGTTACCTGG CGGGGGACTG TGAGTTTGTG GTGGCGAAGG GACGGCGAAC GGCCGTGAGA 17388 .......... .......... .......... .......... .......... .......... 368 CGGCAGTTTC AGGTGAATTA CGGACATTTC CCGGTGATTA ATTTAGGTAT TTACGTTTTT 17448 .......... .......... .......... .......... .......... .......... 368 GGTCCCTTAA CATCCATCCA CTCTAATTTT GGTCCTTATA ATATATACTT AATTAACTAC 17508 .......... .......... .......... .......... .......... .......... 368 ATTGAACCTA CAATTAAGAA ATATACAATT TTTGTCCTTC TAGTTGAGCA TTGTCTTATT 17568 .......... .......... .......... .......... .......... .......... 368 TATCCTTTCG ACTTTCATAA TAGTAGTCGT AGTATTTATC TCGTAAGTTC TTGTTATTTG 17628 | |||| || .......... .......... .......... .......... .......ATT TTGTGGACTG 381 GTTTTGTTAG ACCCGCAATC TACTTGATAT AACTACGTGC AGACATGCCA AGGACTTGGG 17688 || |||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTTCTGTTAG ACCCGCAATC TACTTGATCT AACTACGTGC AGACATGCCA AGGACTTGGG 441 CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTACAACAC AAGTTCAAGG TGCTTGGGTG 17748 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTGCAACAC AAGTTCAAGG TGCTTGGGTG 501 TTGGCAAGGC AGCTTGAACG TGCATGGATT ACGTGCGGGC TAAAGGCGTT GGCAAGACAG 17808 |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| | ||||||| TTGGCAAGGC AGCTTGAACG TGCATGGCTT ACGTGCGGGC TAAGGGCGTT GACAAGACAA 561 CATGTTGACT TGATGAAGCA AGGCTGTGAA GACTTGGCAA GGTCAAAGAC AAAGGCAGTT 17868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTTGACT TGATGAAGCA AGGCTGTGAA GACTTGGCAA GGTCAAAGAC AAAGGCAGTT 621 CACCCGAAAT TGCCGAAATA AAACTAAGTG TGGAAGACAG C 17909 |||||||||| ||| | |||| |||||||||| |||||||||| | CACCCGAAAT TGCTGGAATA AAACTAAGTG TGGAAGACAG C 662 hqPGS_C09HBa0168F14.1-1+_SGN-E371397+ (17616 17909) ******************************************************************************** EST sequence 6 +strand 480 n (File: SGN-E271373+) 1 CTCGTGCCGG CTTAATCCAA TCTTGGTAGC ATCCCTCATT CCTTGAGAAT GAATCTGTTT 61 GAGTATCAAG TCGAGAAACG AAAGGAGAAA TAGACAGCTT TTCTTTTCCA GGTCATCTTC 121 TTTTCTCATT GTTCTTTGGA TGTTCAACAA TTTATAGCAG GAGTAGACTG TCCTTTTTTA 181 CTTTCCACAT AGCTTATCTG TTTCATCCAT GCTTCCTCTG TTTAGAGTTT CCTCTTTCCC 241 TGATTATAAA TAATACTACA AGCAGTTTGA GGATGCCCTA ATAGATCATT GGCATTAGTT 301 TAAGGTTCCT AGCTCGGAAT CTTTGGTCTG TCTGAGTCCT CAGTAACAGC TTGGTTGTAT 361 ACATTGAAAT TTTGTGGACT GTTTCTGTTA GACCCGCAAT CTACTTGATC TAACTACGTG 421 CAGACATGCC AAGGACTTGG GCATTGGTCT TGGCATGGAT GATGGCAAAA CAGTGCAACA Predicted gene structure (within gDNA segment 13183 to 18391): Exon 1 16009 16026 ( 18 n); cDNA 351 368 ( 18 n); score: 0.667 Intron 1 16027 17615 (1589 n); Pd: 0.976 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 17616 17727 ( 112 n); cDNA 369 480 ( 112 n); score: 0.911 MATCH C09HBa0168F14.1-1+ SGN-E271373+ 0.911 130 0.271 C PGS_C09HBa0168F14.1-1+_SGN-E271373+ (16009 16026,17616 17727) Alignment (genomic DNA sequence = upper lines): TTTGGTGAAG ACATAAAAGT AAAAGCATCA ATTCTCTAAC AGCTTAAATT TTTAGTGAAA 16068 || | || | |||| || TTGGTTGTAT ACATTGAA.. .......... .......... .......... .......... 368 CAAATCATAT CGTTCAGCAT GGTACTAATA GCACTCATGA ATTGGAGTCC AATGAACTCT 16128 .......... .......... .......... .......... .......... .......... 368 TCCAAAATAG TATTTCTATG TGCTTATCCA ACAAAACGAT CACACAAGTG AGGGACATCT 16188 .......... .......... .......... .......... .......... .......... 368 TGCAGACATA AATAAGTATC TGAGATCGAA TCTCATCGCC ACTGAGGTCG AACCTCTTCG 16248 .......... .......... .......... .......... .......... .......... 368 CCGGAAAATT ATCCTACCAC AAAGACAACA AAACCAATTC TTTTTTGGTT ATATATAAGG 16308 .......... .......... .......... .......... .......... .......... 368 TGAATCCTCT TGACATAAGA GAAGGCTCTA GTCTAGTGTA GTGTTAAGGG GGTTCAAAAA 16368 .......... .......... .......... .......... .......... .......... 368 TCGTTTTTTT AGATCATAGG TTCATATTTT ATATATGATA TCCCACCCAT CAAAACAAAA 16428 .......... .......... .......... .......... .......... .......... 368 TTTCACATTC ATGATCCAAG AGAGTAATTA CTTGCAAGCA CAACAAATAA ATATAAGGGT 16488 .......... .......... .......... .......... .......... .......... 368 ACCCTTATAA CCGTTAAAAC GTTTCGATTA TGCAGTTCAC ACAGTTCAAC AACATATACA 16548 .......... .......... .......... .......... .......... .......... 368 GAAAACACAG ATGATCCATG AGCTTTGTCG TTGGGAGTAA CAACGCATCA TTGTCTTAAT 16608 .......... .......... .......... .......... .......... .......... 368 GTGGTTCATT CAACATTATA AAAATACACA AAACTTTAGG CTCAAGGGCT TGTGTAGTAA 16668 .......... .......... .......... .......... .......... .......... 368 GAAACTATGC TGCTCGGACT CTTCAAAGAT ATTGGTGGGT TTGTGTAGCA TCAGCTATAC 16728 .......... .......... .......... .......... .......... .......... 368 ATTTTTGGAG ATCTAACACA GGTGCAGCAA CATCTTTAGA GAGTTCGAGC AACATAGGTT 16788 .......... .......... .......... .......... .......... .......... 368 AGCATCAGTT TCTCAACTCA CATTCAAGAG AGAATAAACA GTATCAGCAA CATCAGAAGC 16848 .......... .......... .......... .......... .......... .......... 368 TTCAGCAGTA ATCCTATAAG CAACATCTCC AGCAGCAATC CCTTTTTCTC CCTCAAAAAA 16908 .......... .......... .......... .......... .......... .......... 368 TCCTAAATCT CTCTGCAAAA CCTTATGGAA AACACAAATC CTCATCTTAT ACACGCAATT 16968 .......... .......... .......... .......... .......... .......... 368 CAACGCAGCT TCCCATAGAA ACGCTTGTTG CAGATAATTA CCAACGAGTC GAACGAAAAA 17028 .......... .......... .......... .......... .......... .......... 368 CAAACCTCCC AAAACCAAAC ACTCCTCTCT CAGCCTCACA ACATCCAACG GATTCATGAG 17088 .......... .......... .......... .......... .......... .......... 368 AGACGAGAAT TTTCCCACTT TGGGAACAAT TTTGGACAGA GAGTAAACAG ATATTACACT 17148 .......... .......... .......... .......... .......... .......... 368 ACAGAGCCAT CCACAGAGAA TAGATTTCCA TTCCGAAAGG AGATAAGGTT TAAGAGGAGC 17208 .......... .......... .......... .......... .......... .......... 368 TATAGAGGTG AACGGAGAAA TGAACTTGCC GGAGTTCGCA GCGGCGCGTG TAGATGATGA 17268 .......... .......... .......... .......... .......... .......... 368 TTTTACTTTT AAGGCAGAGG TGGAAATGGA GAAATTGAAG ATGATGTTAG TGATTGGTTT 17328 .......... .......... .......... .......... .......... .......... 368 GGTTACCTGG CGGGGGACTG TGAGTTTGTG GTGGCGAAGG GACGGCGAAC GGCCGTGAGA 17388 .......... .......... .......... .......... .......... .......... 368 CGGCAGTTTC AGGTGAATTA CGGACATTTC CCGGTGATTA ATTTAGGTAT TTACGTTTTT 17448 .......... .......... .......... .......... .......... .......... 368 GGTCCCTTAA CATCCATCCA CTCTAATTTT GGTCCTTATA ATATATACTT AATTAACTAC 17508 .......... .......... .......... .......... .......... .......... 368 ATTGAACCTA CAATTAAGAA ATATACAATT TTTGTCCTTC TAGTTGAGCA TTGTCTTATT 17568 .......... .......... .......... .......... .......... .......... 368 TATCCTTTCG ACTTTCATAA TAGTAGTCGT AGTATTTATC TCGTAAGTTC TTGTTATTTG 17628 | |||| || .......... .......... .......... .......... .......ATT TTGTGGACTG 381 GTTTTGTTAG ACCCGCAATC TACTTGATAT AACTACGTGC AGACATGCCA AGGACTTGGG 17688 || |||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTTCTGTTAG ACCCGCAATC TACTTGATCT AACTACGTGC AGACATGCCA AGGACTTGGG 441 CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTACAACA 17727 |||||||||| |||||||||| |||||||||| ||| ||||| CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTGCAACA 480 hqPGS_C09HBa0168F14.1-1+_SGN-E271373+ (17616 17727) ******************************************************************************** EST sequence 13 -strand 741 n (File: SGN-E371396-) 1 TAGATCATGG CATTTAGTTT AAGGTTCCTA GCTCGGAATC TTTGGTCTGT CTGAGTCNTC 61 AGTAACAGCT TGGTTGTATA CATTGAAATT TTGTGGACTG TTTCTGTTAG ACCCGCAATC 121 TACTTGATCT AACTACGTGC AGACATGCCA AGGACTTGGG CATTGGTCTT GGCATGGATG 181 ATGGCAAAAC AGTGCAACAC AAGTTCAAGG TGCTTGGGTG TTGGCAAGGC AGCTTGAACG 241 TGCATGGCTT ACGTGCGGGC TAAGGGCGTT GACAAGACAA CATGTTGACT TGATGAAGCA 301 AGGCTGTGAA GACTTGGCAA GGTCAAAGAC AAAGGCAGTT CACCCGAAAT TGCTGAAATA 361 AAACTAAGTG TGGAAGACAG CTAAAATATT CTAAGTGTTG GAAGCTGGCA GGATTATTCT 421 AAGTGTTGGA ATGAAGCCTG AAATATTCTA AGTGTTAGAA TATTAGTATT TCGTGTAGAT 481 AAGAATGTAA TTTGAATTAG ATTCTATCTG TTGGAAATAT AGTTGTTGGA AAGTTAGTTT 541 TGAACCCTGG GCTGACATGT GTCGGACAGG TGTCATGTGT AACCGCTTGT AACTGCCATT 601 GTGCAGAATT TTGATTTAAG GTGGAAATTC GTCTAAAGCA GAGGACAGAG AGTTTTCTAG 661 CCTTAGACTG ATTTGTGAAG TCTTCCTTTG TATTAATTAT TGATTAATAA AGGTTGAGAC 721 TTGGTCCTGT AAAAAAAAAA A Predicted gene structure (within gDNA segment 14399 to 21789): Exon 1 17619 18264 ( 646 n); cDNA 91 733 ( 643 n); score: 0.961 MATCH C09HBa0168F14.1-1+ SGN-E371396- 0.961 646 0.872 C PGS_C09HBa0168F14.1-1+_SGN-E371396- (17619 18264) Alignment (genomic DNA sequence = upper lines): TTGTTATTTG GTTTTGTTAG ACCCGCAATC TACTTGATAT AACTACGTGC AGACATGCCA 17678 |||| || || |||||| |||||||||| |||||||| | |||||||||| |||||||||| TTGTGGACTG TTTCTGTTAG ACCCGCAATC TACTTGATCT AACTACGTGC AGACATGCCA 150 AGGACTTGGG CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTACAACAC AAGTTCAAGG 17738 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AGGACTTGGG CATTGGTCTT GGCATGGATG ATGGCAAAAC AGTGCAACAC AAGTTCAAGG 210 TGCTTGGGTG TTGGCAAGGC AGCTTGAACG TGCATGGATT ACGTGCGGGC TAAAGGCGTT 17798 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ||| |||||| TGCTTGGGTG TTGGCAAGGC AGCTTGAACG TGCATGGCTT ACGTGCGGGC TAAGGGCGTT 270 GGCAAGACAG CATGTTGACT TGATGAAGCA AGGCTGTGAA GACTTGGCAA GGTCAAAGAC 17858 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGACAA CATGTTGACT TGATGAAGCA AGGCTGTGAA GACTTGGCAA GGTCAAAGAC 330 AAAGGCAGTT CACCCGAAAT TGCCGAAATA AAACTAAGTG TGGAAGACAG CTAAAATATT 17918 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AAAGGCAGTT CACCCGAAAT TGCTGAAATA AAACTAAGTG TGGAAGACAG CTAAAATATT 390 CTAAGTGTTG GAAGCTGGCA GGATTATTCT AAGTGTTGGA ATGAAGCCTG AAATATTCTA 17978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGTGTTG GAAGCTGGCA GGATTATTCT AAGTGTTGGA ATGAAGCCTG AAATATTCTA 450 AGTGTTAGAA TATTAGTATT TCGTGTAGAT AAGAATGTAA TTTGAATTAG ATTCTATCTG 18038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGTTAGAA TATTAGTATT TCGTGTAGAT AAGAATGTAA TTTGAATTAG ATTCTATCTG 510 TTGGAAATAT AGCTGTTGGA AAGTTAGTTT TGAACTCTGG GCTGACATGT GTCGGACAGG 18098 |||||||||| || ||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTGGAAATAT AGTTGTTGGA AAGTTAGTTT TGAACCCTGG GCTGACATGT GTCGGACAGG 570 TGTCATGTGT AACCGCCGCA TGTAACTGCC ATTGTGCAGA ATTTTGATTT AAGGTGGAAA 18158 |||||||||| || |||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCATGTGT AA---CCGCT TGTAACTGCC ATTGTGCAGA ATTTTGATTT AAGGTGGAAA 627 TTCGTCTAAG GCAGGGGACA GAGAGTTTTC TAGCCTTAGA CTGATTTGTG AAGCCTTCCT 18218 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||| |||||| TTCGTCTAAA GCAGAGGACA GAGAGTTTTC TAGCCTTAGA CTGATTTGTG AAGTCTTCCT 687 TTGTATTAAT TATCGATTAA TAAAGGTTGG GACTTGTTCC TGTAAA 18264 |||||||||| ||| |||||| ||||||||| |||||| ||| |||||| TTGTATTAAT TATTGATTAA TAAAGGTTGA GACTTGGTCC TGTAAA 733 hqPGS_C09HBa0168F14.1-1+_SGN-E371396- (17619 18264) ******************************************************************************** EST sequence 3 +strand 292 n (File: SGN-E213783+) 1 CGCAATCTAC TTGATCTAAC TACGTGCAGA CATGCCAAGG ACTTGGGCAT TGGTCTTGGC 61 ATGGATGATG GCAAAACAGT GCAACACAAG TTCAAGGTGC TTGGGTGTTG GCAAGGCAGC 121 TTGAACGTGC ATGGCTTACG TGCGGGCTAA GGGCGTTGAC AAGACAACAT GTTGACTTGA 181 TGAAGCAAGG CTGTGAAGAC TTGGCAAGGG CAAAAAAAAA AGCAGTTCAC CCCAAATTGC 241 TGAAATAAAA CTAAGTGGGG AAAAAAGCTA AAATATTCCA AATGGTGGAA AC Predicted gene structure (within gDNA segment 16898 to 19290): Exon 1 17642 17931 ( 290 n); cDNA 1 290 ( 290 n); score: 0.938 MATCH C09HBa0168F14.1-1+ SGN-E213783+ 0.938 290 0.993 C PGS_C09HBa0168F14.1-1+_SGN-E213783+ (17642 17931) Alignment (genomic DNA sequence = upper lines): CGCAATCTAC TTGATATAAC TACGTGCAGA CATGCCAAGG ACTTGGGCAT TGGTCTTGGC 17701 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CGCAATCTAC TTGATCTAAC TACGTGCAGA CATGCCAAGG ACTTGGGCAT TGGTCTTGGC 60 ATGGATGATG GCAAAACAGT ACAACACAAG TTCAAGGTGC TTGGGTGTTG GCAAGGCAGC 17761 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATGGATGATG GCAAAACAGT GCAACACAAG TTCAAGGTGC TTGGGTGTTG GCAAGGCAGC 120 TTGAACGTGC ATGGATTACG TGCGGGCTAA AGGCGTTGGC AAGACAGCAT GTTGACTTGA 17821 |||||||||| |||| ||||| |||||||||| ||||||| | |||||| ||| |||||||||| TTGAACGTGC ATGGCTTACG TGCGGGCTAA GGGCGTTGAC AAGACAACAT GTTGACTTGA 180 TGAAGCAAGG CTGTGAAGAC TTGGCAAGGT CAAAGACAAA GGCAGTTCAC CCGAAATTGC 17881 |||||||||| |||||||||| ||||||||| |||| | ||| ||||||||| || ||||||| TGAAGCAAGG CTGTGAAGAC TTGGCAAGGG CAAAAAAAAA AGCAGTTCAC CCCAAATTGC 240 CGAAATAAAA CTAAGTGTGG AAGACAGCTA AAATATTCTA AGTGTTGGAA 17931 ||||||||| ||||||| || || | ||||| |||||||| | | || ||||| TGAAATAAAA CTAAGTGGGG AAAAAAGCTA AAATATTCCA AATGGTGGAA 290 hqPGS_C09HBa0168F14.1-1+_SGN-E213783+ (17642 17931) ******************************************************************************** EST sequence 8 +strand 175 n (File: SGN-E207313+) 1 GCAATCTACT TGATCTAACT ACGTGCAGAC ATGCCAAGGA CTTGGGCATT GGTCTTGGCA 61 TGGATGATGG CAAAACAGTG CAACACAAGT TCAAAGTGCT TGGGTGTTGG CAAGGCAGCT 121 TGAACGTGCA TGGCTTACGT GCCGGCTAAG GGCGTTGACA AGACAACATG TTGAC Predicted gene structure (within gDNA segment 16908 to 18805): Exon 1 17643 17817 ( 175 n); cDNA 1 175 ( 175 n); score: 0.954 MATCH C09HBa0168F14.1-1+ SGN-E207313+ 0.954 175 1.000 C PGS_C09HBa0168F14.1-1+_SGN-E207313+ (17643 17817) Alignment (genomic DNA sequence = upper lines): GCAATCTACT TGATATAACT ACGTGCAGAC ATGCCAAGGA CTTGGGCATT GGTCTTGGCA 17702 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATCTACT TGATCTAACT ACGTGCAGAC ATGCCAAGGA CTTGGGCATT GGTCTTGGCA 60 TGGATGATGG CAAAACAGTA CAACACAAGT TCAAGGTGCT TGGGTGTTGG CAAGGCAGCT 17762 |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TGGATGATGG CAAAACAGTG CAACACAAGT TCAAAGTGCT TGGGTGTTGG CAAGGCAGCT 120 TGAACGTGCA TGGATTACGT GCGGGCTAAA GGCGTTGGCA AGACAGCATG TTGAC 17817 |||||||||| ||| |||||| || |||||| ||||||| || ||||| |||| ||||| TGAACGTGCA TGGCTTACGT GCCGGCTAAG GGCGTTGACA AGACAACATG TTGAC 175 hqPGS_C09HBa0168F14.1-1+_SGN-E207313+ (17643 17817) ******************************************************************************** EST sequence 2 +strand 642 n (File: SGN-E250289+) 1 ACTGGCAGTT GACTTTGCTG AAGAAAAGTC TCTTCCAATG GATTGTCAAT TTCTCCTCAA 61 CAAGTGCTTT GTCTAATACA TTACACCAAG TTTGAGAAAA ACAAGATCCA GCGGATGAAA 121 ATACAACAAA AAAAGAGGCA GCGCTGGATT GTCAATTTCT CCTCAACAAT AGCTCTCTCT 181 AATACATTAG AGCAAGTTGA AGAAAATATA CATCAAGGAC TTGGGCATTG GTCTTGACAT 241 GAATGAGGGC AAAACAGTGC AACACAGGTT CAAGGTGTTT GGGTGTTGGC AAGGCAACTT 301 GAACATGCAA GGCTTAAGTG CGGGCTAGAG TCATCGGCAA GGCAGCGTGT TGGCTTGACA 361 AGGCAAAACT TGGTTGGNCA GACTTGACGA TGGTAAGAAC AAAGGCATTC ACGTAAATTG 421 CTGAAATAAA ACCAAGTGTT GGAGGACAAC TAAAATATTC TAAGTGTTGG AAGCTGGCTG 481 AAATAATCTA AGTGTTGGAA TGTAGCCTGA AATATTCTAA GTGTTAAAAT ATTAATATTT 541 CGTGTGGATA AGGATGTAAT TTAAATTAGA GTCTATCTGT TAGAAATATA TCTGTTGGAA 601 ACTTAGTTTG AATCTTGTGA TGACAAGTGT CGGACATGTG TC Predicted gene structure (within gDNA segment 12819 to 19755): Exon 1 13906 13931 ( 26 n); cDNA 163 188 ( 26 n); score: 0.673 Intron 1 13932 16523 (2592 n); Pd: 0.900 (s: 0), Pa: 0.940 (s: 0) Exon 2 16524 16545 ( 22 n); cDNA 189 209 ( 21 n); score: 0.636 Intron 2 16546 17670 (1125 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0.90) Exon 3 17671 18102 ( 432 n); cDNA 210 642 ( 433 n); score: 0.819 MATCH C09HBa0168F14.1-1+ SGN-E250289+ 0.819 480 0.748 C PGS_C09HBa0168F14.1-1+_SGN-E250289+ (13906 13931,16524 16545,17671 18102) Alignment (genomic DNA sequence = upper lines): TCAACAAT-G CTATACTAAA TTACTTTGTA TCGTTACTTA AGAAGAGACC TAATTCTAGT 13964 |||||||| | || | || | ||| || TCAACAATAG CTCT-CTCTA ATACATT... .......... .......... .......... 188 TCTGCCGCTC TCTATCTTAC ATGCCATTAC CAAAGTCATA GAAATCAACA AGTTATATAC 14024 .......... .......... .......... .......... .......... .......... 188 TTACCTCTGG TTCAAATGTT TTCAAACTAA ATAGGCGCTG AATTGCTGGC TCTCCTTGTT 14084 .......... .......... .......... .......... .......... .......... 188 TTAATTCATT GTATGCTTTT CCCGCATCCT GCACAACTCT TAGATTCAGA TTGATAGTTA 14144 .......... .......... .......... .......... .......... .......... 188 AAATTGCTGC ACATGCTAAA CCATAATATC AACATGAAGC AGTATGAGAA AAGTCCGACC 14204 .......... .......... .......... .......... .......... .......... 188 GAACAAGAAA AAAAAAATAG TCAAAAGAGG AGAGGGTAAC ATAAAAGTGT AAGTCACTTC 14264 .......... .......... .......... .......... .......... .......... 188 CAATATAAAT GGGATCGAGA AGTTGATCAA ATTTATGAAG CCTCTGCCTC GAGAAAAGCT 14324 .......... .......... .......... .......... .......... .......... 188 TCTTCTATTA AGGGAAAGTT TTGAGTGATT TACAGTTTTA TTCAAAACTT CCTATGGATG 14384 .......... .......... .......... .......... .......... .......... 188 CCTTCTGATG TGACAACCTC CTGACTAACT TTGTTACACG CCATTCAATT CAAGTACCTG 14444 .......... .......... .......... .......... .......... .......... 188 GATAATTTGG TACTATTAGA TCAGCAATTC ATAAGGTAAC TATCTCATGA TTAATTGTAC 14504 .......... .......... .......... .......... .......... .......... 188 TTGTAGGTTG TGCTGCTTGA TTCTTATCCC AACGCCCAAA AACAAAGCCA TGTATGGGGT 14564 .......... .......... .......... .......... .......... .......... 188 CCAGGCTCCC AGGTAACACC TACTGCTATA TGCTTTCATT TTTTAAAGAG TAAAATAACA 14624 .......... .......... .......... .......... .......... .......... 188 ACCTACTTTA ATACGCTTCT TTCTTTCAAG TAATACCAGA CTCGAAGCAA TGTGCATTGC 14684 .......... .......... .......... .......... .......... .......... 188 AACAGTTGAA GTAATATAAA AAATATATAT AAAGTAGTCA TTCAAAAGTT GGTTTAACGG 14744 .......... .......... .......... .......... .......... .......... 188 AAGACAACAA CAACAACATA GCCAGTGAAA CCCCACAAGC GGGGTCCGGG GAGGGTAGAA 14804 .......... .......... .......... .......... .......... .......... 188 TGTAGTCAGA CTTTACCTCT ACTTTGTGGA GTTGGTTTAA GGGAAGAACA TCACATAAAG 14864 .......... .......... .......... .......... .......... .......... 188 TTCAAATCTC GATTCTTTGA AATTTGTCAA AGTTGATCAA GAAAATAATT AGTTTAGAAG 14924 .......... .......... .......... .......... .......... .......... 188 TGTGTTGTGC ACATGGGATG GAAGTAATAT AACCTATTTA TCTTGTTTCA GATATACGAG 14984 .......... .......... .......... .......... .......... .......... 188 ACAGATCAAA TTTCAAACAA ATGAACTTAC AGAAACATAA TCCTTCAATA ATTGAAACAT 15044 .......... .......... .......... .......... .......... .......... 188 AACCTGGATT GGGGAGATCA AAAGAACCAG GGATGTCACA AAAGAAACCA TGGCAGAGCA 15104 .......... .......... .......... .......... .......... .......... 188 ATCAATTGAA CCTTTTGAAA CAAGCAGCGT TCCAGCGCTA AATGTGAGTA AGGTGCCAAA 15164 .......... .......... .......... .......... .......... .......... 188 ATATATTGCC TGTACCAACT GAGGAATAAA TGACTTCAAC TTCTTCTTTC CCATAGTCGC 15224 .......... .......... .......... .......... .......... .......... 188 AGATAGATCA GCAAAAGCAA GTGACTGGAA CTTCTTTCTT TCACAGGACT CTGCATTGTT 15284 .......... .......... .......... .......... .......... .......... 188 TGCCTTCACG AAAAGAATTG ATGGGAGGAT CTGTAACAAG TAGTAATTTT CCTTCAGTTA 15344 .......... .......... .......... .......... .......... .......... 188 CTGTCGAAAG CTTGATTCTT TGAATATAAG GAAGAGAGTA ACATTAGAAC AAAAAAGCTA 15404 .......... .......... .......... .......... .......... .......... 188 GAAAGAAGGG AGAAGGTAGA AGAAATTTTC TTTATGTGTT GGAATGTCCA TGAGCATACA 15464 .......... .......... .......... .......... .......... .......... 188 TTCATTTTGG AAAAACAAAA GCTATACCAA ACTTCAAAAC TTAAGAAGAC TAAGAAGCTA 15524 .......... .......... .......... .......... .......... .......... 188 TTGCGCTTTG ACTGAAAATT TCATATTGGA ATGAAATGGC CTCGAATTAC ACAATGGATA 15584 .......... .......... .......... .......... .......... .......... 188 TAGAGAATTC ATATGGTAAA AACCAACTAG TTTTGGATCA AAGCTAGTTG ATTGATTCAT 15644 .......... .......... .......... .......... .......... .......... 188 TATATGCTAA TGTAACCAAA AACACTTACC TCATTCAGAT AGGAAGAGAG AGAAGCAGCA 15704 .......... .......... .......... .......... .......... .......... 188 GCAAGATGTG CCTTGTTTGA TACATCACGA AGTTTTTCGC CCAAGTAACC AATCACAAAA 15764 .......... .......... .......... .......... .......... .......... 188 CCCATCAATG GGATCACCTT AAATAACACC CATCAAGATT CGATATAAAC TCATCCAACA 15824 .......... .......... .......... .......... .......... .......... 188 TTCATAAATA ATTCATAATA ATAGAAGCAA AGAACTAATG CATCTTTAGT CACCAAGGCG 15884 .......... .......... .......... .......... .......... .......... 188 GAAAGTAATG ATAGAACAGG GTTGATGACC AACATCTGAA CTGCCATTGC TGATAATTGA 15944 .......... .......... .......... .......... .......... .......... 188 AGACTACTTG GAACAATAGT CTGTAAATAG CAAAACACGA GATTTAGGAA GAGAAAAGAA 16004 .......... .......... .......... .......... .......... .......... 188 AGAGTTTGGT GAAGACATAA AAGTAAAAGC ATCAATTCTC TAACAGCTTA AATTTTTAGT 16064 .......... .......... .......... .......... .......... .......... 188 GAAACAAATC ATATCGTTCA GCATGGTACT AATAGCACTC ATGAATTGGA GTCCAATGAA 16124 .......... .......... .......... .......... .......... .......... 188 CTCTTCCAAA ATAGTATTTC TATGTGCTTA TCCAACAAAA CGATCACACA AGTGAGGGAC 16184 .......... .......... .......... .......... .......... .......... 188 ATCTTGCAGA CATAAATAAG TATCTGAGAT CGAATCTCAT CGCCACTGAG GTCGAACCTC 16244 .......... .......... .......... .......... .......... .......... 188 TTCGCCGGAA AATTATCCTA CCACAAAGAC AACAAAACCA ATTCTTTTTT GGTTATATAT 16304 .......... .......... .......... .......... .......... .......... 188 AAGGTGAATC CTCTTGACAT AAGAGAAGGC TCTAGTCTAG TGTAGTGTTA AGGGGGTTCA 16364 .......... .......... .......... .......... .......... .......... 188 AAAATCGTTT TTTTAGATCA TAGGTTCATA TTTTATATAT GATATCCCAC CCATCAAAAC 16424 .......... .......... .......... .......... .......... .......... 188 AAAATTTCAC ATTCATGATC CAAGAGAGTA ATTACTTGCA AGCACAACAA ATAAATATAA 16484 .......... .......... .......... .......... .......... .......... 188 GGGTACCCTT ATAACCGTTA AAACGTTTCG ATTATGCAGT TCACACAGTT CAACAACATA 16544 || |||| || || ||| .......... .......... .......... .........A GAGCA-AGTT GAAGAAAATA 208 TACAGAAAAC ACAGATGATC CATGAGCTTT GTCGTTGGGA GTAACAACGC ATCATTGTCT 16604 | T......... .......... .......... .......... .......... .......... 209 TAATGTGGTT CATTCAACAT TATAAAAATA CACAAAACTT TAGGCTCAAG GGCTTGTGTA 16664 .......... .......... .......... .......... .......... .......... 209 GTAAGAAACT ATGCTGCTCG GACTCTTCAA AGATATTGGT GGGTTTGTGT AGCATCAGCT 16724 .......... .......... .......... .......... .......... .......... 209 ATACATTTTT GGAGATCTAA CACAGGTGCA GCAACATCTT TAGAGAGTTC GAGCAACATA 16784 .......... .......... .......... .......... .......... .......... 209 GGTTAGCATC AGTTTCTCAA CTCACATTCA AGAGAGAATA AACAGTATCA GCAACATCAG 16844 .......... .......... .......... .......... .......... .......... 209 AAGCTTCAGC AGTAATCCTA TAAGCAACAT CTCCAGCAGC AATCCCTTTT TCTCCCTCAA 16904 .......... .......... .......... .......... .......... .......... 209 AAAATCCTAA ATCTCTCTGC AAAACCTTAT GGAAAACACA AATCCTCATC TTATACACGC 16964 .......... .......... .......... .......... .......... .......... 209 AATTCAACGC AGCTTCCCAT AGAAACGCTT GTTGCAGATA ATTACCAACG AGTCGAACGA 17024 .......... .......... .......... .......... .......... .......... 209 AAAACAAACC TCCCAAAACC AAACACTCCT CTCTCAGCCT CACAACATCC AACGGATTCA 17084 .......... .......... .......... .......... .......... .......... 209 TGAGAGACGA GAATTTTCCC ACTTTGGGAA CAATTTTGGA CAGAGAGTAA ACAGATATTA 17144 .......... .......... .......... .......... .......... .......... 209 CACTACAGAG CCATCCACAG AGAATAGATT TCCATTCCGA AAGGAGATAA GGTTTAAGAG 17204 .......... .......... .......... .......... .......... .......... 209 GAGCTATAGA GGTGAACGGA GAAATGAACT TGCCGGAGTT CGCAGCGGCG CGTGTAGATG 17264 .......... .......... .......... .......... .......... .......... 209 ATGATTTTAC TTTTAAGGCA GAGGTGGAAA TGGAGAAATT GAAGATGATG TTAGTGATTG 17324 .......... .......... .......... .......... .......... .......... 209 GTTTGGTTAC CTGGCGGGGG ACTGTGAGTT TGTGGTGGCG AAGGGACGGC GAACGGCCGT 17384 .......... .......... .......... .......... .......... .......... 209 GAGACGGCAG TTTCAGGTGA ATTACGGACA TTTCCCGGTG ATTAATTTAG GTATTTACGT 17444 .......... .......... .......... .......... .......... .......... 209 TTTTGGTCCC TTAACATCCA TCCACTCTAA TTTTGGTCCT TATAATATAT ACTTAATTAA 17504 .......... .......... .......... .......... .......... .......... 209 CTACATTGAA CCTACAATTA AGAAATATAC AATTTTTGTC CTTCTAGTTG AGCATTGTCT 17564 .......... .......... .......... .......... .......... .......... 209 TATTTATCCT TTCGACTTTC ATAATAGTAG TCGTAGTATT TATCTCGTAA GTTCTTGTTA 17624 .......... .......... .......... .......... .......... .......... 209 TTTGGTTTTG TTAGACCCGC AATCTACTTG ATATAACTAC GTGCAGACAT GCCAAGGACT 17684 |||| |||||||| .......... .......... .......... .......... ......ACAT --CAAGGACT 221 TGGGCATTGG TCTTGGCATG GATGATGGCA AAACAGTACA ACACAAGTTC AAGGTGCTTG 17744 |||||||||| ||||| |||| |||| |||| ||||||| || ||||| |||| |||||| ||| TGGGCATTGG TCTTGACATG AATGAGGGCA AAACAGTGCA ACACAGGTTC AAGGTGTTTG 281 GGTGTTGGCA AGGCAGCTTG AACGTGCATG GATTACGTGC GGGCTAAAGG CGTTGGCAAG 17804 |||||||||| ||||| |||| ||| |||| | | ||| |||| |||||| || | | |||||| GGTGTTGGCA AGGCAACTTG AACATGCAAG GCTTAAGTGC GGGCTAGAGT CATCGGCAAG 341 ACAGCATGTT GACTTGATGA AGCAAGGC-T -G-T-GA-AG ACTTGGCAAG GTCAAAGACA 17859 |||| |||| | ||||| | |||| | | | | | || ||||| | | | || ||| GCAGCGTGTT GGCTTGACAA GGCAAAACTT GGTTGGNCAG ACTTGACGAT GGTAAGAACA 401 AAGGCAGTTC ACCCGAAATT GCCGAAATAA AACTAAGTG- TGGAAGACAG CTAAAATATT 17918 |||||| ||| | | ||||| || ||||||| ||| ||||| |||| |||| |||||||||| AAGGCA-TTC A-CGTAAATT GCTGAAATAA AACCAAGTGT TGGAGGACAA CTAAAATATT 459 CTAAGTGTTG GAAGCTGGCA GGATTATTCT AAGTGTTGGA ATGAAGCCTG AAATATTCTA 17978 |||||||||| ||||||||| | | || ||| |||||||||| ||| |||||| |||||||||| CTAAGTGTTG GAAGCTGGCT GAAATAATCT AAGTGTTGGA ATGTAGCCTG AAATATTCTA 519 AGTGTTAGAA TATTAGTATT TCGTGTAGAT AAGAATGTAA TTTGAATTAG ATTCTATCTG 18038 ||||||| || ||||| |||| |||||| ||| ||| |||||| ||| |||||| | |||||||| AGTGTTAAAA TATTAATATT TCGTGTGGAT AAGGATGTAA TTTAAATTAG AGTCTATCTG 579 TTGGAAATAT AGCTGTTGGA AAGTTAGTTT TGAACTCTGG GCTGACATGT GTCGGACAGG 18098 || ||||||| | |||||||| || |||| || |||| || | ||||| || |||||||| | TTAGAAATAT ATCTGTTGGA AACTTAG-TT TGAATCTTGT GATGACAAGT GTCGGACATG 638 TGTC 18102 |||| TGTC 642 hqPGS_C09HBa0168F14.1-1+_SGN-E250289+ (17671 18102) ******************************************************************************** EST sequence 10 -strand 242 n (File: SGN-E397827-) 1 GTTAAAGAGG GGTATGAATG CTTTAATCGT GAGGAAGATT TGGATGTCCC TGCAAGTATT 61 GATGTTTTTG GTGTATTTCA ACTCCAAATT ACTCCTCCCA ACTATAAGCT AGATGTTTGT 121 GTAACTTATT TAGGTTGATG AACAACTTAA GTCATGTAAA TTACTTGATC TCTTTTGTAA 181 CTTTTGCATC TTCATGATGT TTTTCTCAAT AAAACTTACT TATTTCATCA AAAAAAAAAA 241 AA Predicted gene structure (within gDNA segment 19889 to 18240): Exon 1 19171 18935 ( 237 n); cDNA 1 237 ( 237 n); score: 0.966 MATCH C09HBa0168F14.1-1- SGN-E397827- 0.966 237 0.979 C PGS_C09HBa0168F14.1-1-_SGN-E397827- (19171 18935) Alignment (genomic DNA sequence = upper lines): GTTAAAGATG CATATGAATG CTTTAATCAT GAAGAAGATC TGGATGTCCC TGCAAGTATT 19112 |||||||| | |||||||| |||||||| | || |||||| |||||||||| |||||||||| GTTAAAGAGG GGTATGAATG CTTTAATCGT GAGGAAGATT TGGATGTCCC TGCAAGTATT 60 GATGTTTTTG GTGTATTTCA ACTCCAAATT ACTCCTCCCA ACTATAAGCT AGATGTTTGT 19052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTTTTG GTGTATTTCA ACTCCAAATT ACTCCTCCCA ACTATAAGCT AGATGTTTGT 120 GTAACTTATT TAGGTTGATG AACAACTTAA GTCATGTAAA TTACTTGATC TCTTTTGTAA 18992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACTTATT TAGGTTGATG AACAACTTAA GTCATGTAAA TTACTTGATC TCTTTTGTAA 180 CTTTTGCATC TTCATGATGT TTTTCTCAAT AAAACTTACT TATTTCATCA AAGAGAA 18935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || | || CTTTTGCATC TTCATGATGT TTTTCTCAAT AAAACTTACT TATTTCATCA AAAAAAA 237 hqPGS_C09HBa0168F14.1-1-_SGN-E397827- (19171 18935) ******************************************************************************** EST sequence 37 +strand 603 n (File: SGN-E244981+) 1 TAAAATTGGC AGTGGCAATT GACGAATCTT GCATGGAAAT CATGATGCTA TTGCTCAAGC 61 ATTCTCCTAA TTTAGAGGTT CTTAATTTGT TTTCTGATGA GAATTACGGT TGGGATGAAA 121 ACTGGAAGTT CCATGATCCT AGTGAAAGCG TTTTGTGCCT GGAGTCTCAT CTAAAGTTGA 181 TTCAGTTGGC TGGTTTCAAA AATGAAGATA AAGAGATAGA GCTACTGAGG TTTTTCCTCA 241 AGAATGCACA AGTATTAGAA GAACTGATAA TTGTTTGGGA TAGCTGTAGT GGCATATCAG 301 AAGAGGCAAT AGAGGAGGTT TCCAACTTTC CTAGAGCTTC TTCACATGTT GTTGTCTCAT 361 TTCTTAATTT CAAACCCAAA TCAAGATCTC GTTACCGGGA CAATTCAGTT TAAAAGAGGT 421 TCTGATTGTG AGACGCTATG TTGCTTGGAC TTGGACTCTT CAAAAATGTT GTACTACTTT 481 TGGAAGGTCC GACATACATT TGAAGTGTCC AAGTAACATA GGTTAGAAGT ACCCTTTTTG 541 GGAACTAGTG CATGAACAAG CACATGAAGC CTTAACGAAT TTCTACTACT GTTTCGCCTT 601 TTT Predicted gene structure (within gDNA segment 20568 to 18747): Exon 1 19968 19367 ( 602 n); cDNA 1 602 ( 602 n); score: 0.997 MATCH C09HBa0168F14.1-1- SGN-E244981+ 0.997 602 0.998 C PGS_C09HBa0168F14.1-1-_SGN-E244981+ (19968 19367) Alignment (genomic DNA sequence = upper lines): TAAAATTGGC AGTGGCAATT GACGAATCTT GCATGGAAAT CATGATGCTA TTGCTCAAGC 19909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATTGGC AGTGGCAATT GACGAATCTT GCATGGAAAT CATGATGCTA TTGCTCAAGC 60 ATTCTCCTAA TTTAGAGGTT CTTAATTTGT TTTCTGATGA GAATTACGGT TGGGATGAAA 19849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTCCTAA TTTAGAGGTT CTTAATTTGT TTTCTGATGA GAATTACGGT TGGGATGAAA 120 ACTGGAAGTT CCATGATCCT AGTGAAAGCG TTTTGTGCCT GGAGTCTCAT CTAAAGTTGA 19789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGGAAGTT CCATGATCCT AGTGAAAGCG TTTTGTGCCT GGAGTCTCAT CTAAAGTTGA 180 TTCAGTTGGC TGGTTTCAAA AATGAAGATA AAGAGATAGA GCTACTGAGG TTTTTCCTCA 19729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTTGGC TGGTTTCAAA AATGAAGATA AAGAGATAGA GCTACTGAGG TTTTTCCTCA 240 AGAATGCACA AGTATTAGAA GAACTGATAA TTGTTTGGGA TAGCTGTAGT GGCATATCAG 19669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGCACA AGTATTAGAA GAACTGATAA TTGTTTGGGA TAGCTGTAGT GGCATATCAG 300 AAGAGGCAAT AGAGGAGGTT TCCAACTTTC CTAGAGCTTC TTCACATGTT GTTGTCTCAT 19609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCAAT AGAGGAGGTT TCCAACTTTC CTAGAGCTTC TTCACATGTT GTTGTCTCAT 360 TTCTTAATTT CAAACCCAAA TCAAGATCTC GTTACCGGGA CAATTCAGTT TAAAAGAGGT 19549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTAATTT CAAACCCAAA TCAAGATCTC GTTACCGGGA CAATTCAGTT TAAAAGAGGT 420 TCTGATTGTG AGACGCTATG TTGCTTGGAC TTGGACTCTC CAAAAATGTT GTACTACTTT 19489 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCTGATTGTG AGACGCTATG TTGCTTGGAC TTGGACTCTT CAAAAATGTT GTACTACTTT 480 TGGAAGGTCC GACATACATT TGAAGTGTCC AAGTAACATA GGTTAGAAGT ACCCTTTTTG 19429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGGTCC GACATACATT TGAAGTGTCC AAGTAACATA GGTTAGAAGT ACCCTTTTTG 540 GGAACTAGTG CATGAGCAAG CACATGAAGC CTTAACGAAT TTCTACTACT GTTTCGCCTT 19369 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACTAGTG CATGAACAAG CACATGAAGC CTTAACGAAT TTCTACTACT GTTTCGCCTT 600 TT 19367 || TT 602 hqPGS_C09HBa0168F14.1-1-_SGN-E244981+ (19968 19367) ******************************************************************************** EST sequence 22 +strand 470 n (File: SGN-E254305+) 1 TGGCAAAGGA TATGATCATA GAGAATCTCT TGTCTATAGA AGTTGTTCAC ATCTTATTTT 61 TTTATTCAGA CGATGTAATA AAAGAAATTG GAATGCGTTT GCATAAGGTG TTCAAGAATG 121 TCGCTTCTAC ATCAGCTTTG AAATTATGCA AAGGTTCTGT TGTTGGTTTG TATAGTGTAT 181 TTCATGGAGT AAGAAACTTC CCGGTCACGT TTTATAAGCT CAAGTCCTTA AAATTGGCAG 241 TGGCAATTGA CGAATCTTGC ATGGAAATCA TGATGCTATT GCTCAAGCAT TCTCCTAATT 301 TAGAGGTTCT TAATTTGTTT TCTGATGAGA ATTACGGTTG GGATGAAAAC TGGAAGTTCC 361 ATGATCCTAG TGAAAGCGTT TTGTGCCTGG AGTCTCATCT AAAGTTGATT CAGTTGGCTG 421 GTTTCAAAAA TGAAGATAAA GAGATAGAGC TACTGAGGTT TTTCCTCAAG Predicted gene structure (within gDNA segment 20796 to 19117): Exon 1 20196 19727 ( 470 n); cDNA 1 470 ( 470 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E254305+ 1.000 470 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E254305+ (20196 19727) Alignment (genomic DNA sequence = upper lines): TGGCAAAGGA TATGATCATA GAGAATCTCT TGTCTATAGA AGTTGTTCAC ATCTTATTTT 20137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAAAGGA TATGATCATA GAGAATCTCT TGTCTATAGA AGTTGTTCAC ATCTTATTTT 60 TTTATTCAGA CGATGTAATA AAAGAAATTG GAATGCGTTT GCATAAGGTG TTCAAGAATG 20077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTCAGA CGATGTAATA AAAGAAATTG GAATGCGTTT GCATAAGGTG TTCAAGAATG 120 TCGCTTCTAC ATCAGCTTTG AAATTATGCA AAGGTTCTGT TGTTGGTTTG TATAGTGTAT 20017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCTTCTAC ATCAGCTTTG AAATTATGCA AAGGTTCTGT TGTTGGTTTG TATAGTGTAT 180 TTCATGGAGT AAGAAACTTC CCGGTCACGT TTTATAAGCT CAAGTCCTTA AAATTGGCAG 19957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATGGAGT AAGAAACTTC CCGGTCACGT TTTATAAGCT CAAGTCCTTA AAATTGGCAG 240 TGGCAATTGA CGAATCTTGC ATGGAAATCA TGATGCTATT GCTCAAGCAT TCTCCTAATT 19897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAATTGA CGAATCTTGC ATGGAAATCA TGATGCTATT GCTCAAGCAT TCTCCTAATT 300 TAGAGGTTCT TAATTTGTTT TCTGATGAGA ATTACGGTTG GGATGAAAAC TGGAAGTTCC 19837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGGTTCT TAATTTGTTT TCTGATGAGA ATTACGGTTG GGATGAAAAC TGGAAGTTCC 360 ATGATCCTAG TGAAAGCGTT TTGTGCCTGG AGTCTCATCT AAAGTTGATT CAGTTGGCTG 19777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATCCTAG TGAAAGCGTT TTGTGCCTGG AGTCTCATCT AAAGTTGATT CAGTTGGCTG 420 GTTTCAAAAA TGAAGATAAA GAGATAGAGC TACTGAGGTT TTTCCTCAAG 19727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAAAAA TGAAGATAAA GAGATAGAGC TACTGAGGTT TTTCCTCAAG 470 hqPGS_C09HBa0168F14.1-1-_SGN-E254305+ (20196 19727) ******************************************************************************** EST sequence 12 +strand 352 n (File: SGN-E239931+) 1 GAATCTCTTG TCTATAGAAG TTGTTCACAT CTTATTTTTT TATTCAGACG ATGTAATAAA 61 AGAAATTGGA ATGCGTTTGC ATAAGGTGTT CAAGAATGTC GCTTCTACAT CAGCTTTGAA 121 ATTATGCAAA GGTTCTGTTG ATGGTTTGTA TAGTGTATTT CATGGAGTAA GAAACTTCCC 181 GGTCACGTTT TATAAGCTCA AGTCCTTAAA ATTGGCAGTG GCAATTGACG AATCTTGCAT 241 GGAAATCATG ATGCTATTGC TCAAGCATTC TCCTAATTTA GAGGTTCTTA ATTTGTTTTC 301 TGATGAGAAT TACGGTTGGG ATGAAAACTG GAAGTTCCAT GATCCTAGTG AA Predicted gene structure (within gDNA segment 20774 to 19213): Exon 1 20174 19823 ( 352 n); cDNA 1 352 ( 352 n); score: 0.997 MATCH C09HBa0168F14.1-1- SGN-E239931+ 0.997 352 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E239931+ (20174 19823) Alignment (genomic DNA sequence = upper lines): GAATCTCTTG TCTATAGAAG TTGTTCACAT CTTATTTTTT TATTCAGACG ATGTAATAAA 20115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCTCTTG TCTATAGAAG TTGTTCACAT CTTATTTTTT TATTCAGACG ATGTAATAAA 60 AGAAATTGGA ATGCGTTTGC ATAAGGTGTT CAAGAATGTC GCTTCTACAT CAGCTTTGAA 20055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATTGGA ATGCGTTTGC ATAAGGTGTT CAAGAATGTC GCTTCTACAT CAGCTTTGAA 120 ATTATGCAAA GGTTCTGTTG TTGGTTTGTA TAGTGTATTT CATGGAGTAA GAAACTTCCC 19995 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATTATGCAAA GGTTCTGTTG ATGGTTTGTA TAGTGTATTT CATGGAGTAA GAAACTTCCC 180 GGTCACGTTT TATAAGCTCA AGTCCTTAAA ATTGGCAGTG GCAATTGACG AATCTTGCAT 19935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCACGTTT TATAAGCTCA AGTCCTTAAA ATTGGCAGTG GCAATTGACG AATCTTGCAT 240 GGAAATCATG ATGCTATTGC TCAAGCATTC TCCTAATTTA GAGGTTCTTA ATTTGTTTTC 19875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAATCATG ATGCTATTGC TCAAGCATTC TCCTAATTTA GAGGTTCTTA ATTTGTTTTC 300 TGATGAGAAT TACGGTTGGG ATGAAAACTG GAAGTTCCAT GATCCTAGTG AA 19823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGATGAGAAT TACGGTTGGG ATGAAAACTG GAAGTTCCAT GATCCTAGTG AA 352 hqPGS_C09HBa0168F14.1-1-_SGN-E239931+ (20174 19823) ******************************************************************************** EST sequence 51 +strand 527 n (File: SGN-E391824+) 1 ATTTGCCGGA TGATATACTG CACAATATAC TTTCATATCT GTACATCTTT GATGTTGTTC 61 AGCTAAGCAT TTTATCGAAA AGATGGAACT ATATATGGAG GACAATGCCT TACTTGAATT 121 TTGATATTAA TAGCTTTGGT TGTGAAAGGA TTGATAGGCT TTGGGATATG GGTATGGCTG 181 AGAAATTCAA AGATTTTATC AATTGGGTGT TGATTAACCG ATGTGGGGAT AGCCTTGTTT 241 GTTTTAAGCT TTGTTGTGGG GATATTTTTG GTAAAAGGGC TATTTTTCGA TGGGTTCGTG 301 TTGTGACAGC TCGAAATGTT CAAGAACTCG TGTTAGATTT TTGTCCTGCT GAGCCATTTG 361 AGTTGCCATA TTGTGTTGTG ACTTGTGAAT CCTTGCGAGT TTTGAAATTA CGGCTTGATG 421 GGTCTGTACT TAAGTTGTCT AATCATTTTG GATTTCATCA GCTTAAATTT CTTCATCATG 481 AAAAAGTTGA GTTATCAAAC GAGCATTTGA CGAGTTGCTT GTTCTCA Predicted gene structure (within gDNA segment 21504 to 19768): Exon 1 20904 20378 ( 527 n); cDNA 1 527 ( 527 n); score: 0.998 MATCH C09HBa0168F14.1-1- SGN-E391824+ 0.998 527 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E391824+ (20904 20378) Alignment (genomic DNA sequence = upper lines): ATTTGCCGGA TGATATACTG CACAATATAC TTTCATATCT GTACATCTTT GATGTTGTTC 20845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGCCGGA TGATATACTG CACAATATAC TTTCATATCT GTACATCTTT GATGTTGTTC 60 AGCTAAGCAT TTTATCGAAA AGATGGAACT ATATATGGAG GACAATGCCT TACTTGAATT 20785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAAGCAT TTTATCGAAA AGATGGAACT ATATATGGAG GACAATGCCT TACTTGAATT 120 TTGATATTAA TAGCTTTGGT TGTGAAAGGA TTGATAGGCT TTGGGATATG GGTATGGCTG 20725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATATTAA TAGCTTTGGT TGTGAAAGGA TTGATAGGCT TTGGGATATG GGTATGGCTG 180 AGAAATTCAA AGATTTTATC AATTGGGTGT TGATTAACCG ATGTGGGGAT AGCCTTGTTT 20665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATTCAA AGATTTTATC AATTGGGTGT TGATTAACCG ATGTGGGGAT AGCCTTGTTT 240 GTTTTAAGCT TTGTTGTGGG GATATTTTTG GTAAAAGGGC TATTTTTCGA TGGGTTCGTG 20605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTAAGCT TTGTTGTGGG GATATTTTTG GTAAAAGGGC TATTTTTCGA TGGGTTCGTG 300 TTGTGACAGC TCGAAATGTT CAAGAACTCG TGTTAGATTT TTGTCCTGCT GAGCCATTTG 20545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGACAGC TCGAAATGTT CAAGAACTCG TGTTAGATTT TTGTCCTGCT GAGCCATTTG 360 AGTTGCCATA TTGTGTTGTG ACTTGTGAAT CCTTGCGAGT TTTGAAATTA CGGCTTGATG 20485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCCATA TTGTGTTGTG ACTTGTGAAT CCTTGCGAGT TTTGAAATTA CGGCTTGATG 420 GGTCTGTACT TAAGTTGTCT AATCATTTTG GATTTCATCA GCTTAAATTT CTTCATCTTG 20425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GGTCTGTACT TAAGTTGTCT AATCATTTTG GATTTCATCA GCTTAAATTT CTTCATCATG 480 AAAAAGTTGA GTTATCAAAC GAGCATTTGA CGAGTTGCTT GTTCTCA 20378 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAAAAGTTGA GTTATCAAAC GAGCATTTGA CGAGTTGCTT GTTCTCA 527 hqPGS_C09HBa0168F14.1-1-_SGN-E391824+ (20904 20378) ******************************************************************************** EST sequence 49 +strand 499 n (File: SGN-E246727+) 1 TTGCCGGATG ATATACTGCA CAATATACTT TCATATCTGT ACATCTTTGA TGTTGTTCAG 61 CTAAGCATTT TATCGAAAAG ATGGAACTAT ATATGGAGGA CAATGCCTTA CTTGAATTTT 121 GATATTAATA GCTTTGGTTG TGAAAGGATT GATAGGCTTT GGGATATGGG TATGGCTGAG 181 AAATTCAAAG ATTTTATCAA TTGGGTGTTG ATTAACCGAT GTGGGGATAG CCTTGTTTGT 241 TTTAAGCTTT GTTGTGGGGA TATTTTTGGT AAAAGGGCTA TTTTTCGATG GGTTCGTGTT 301 GTGACAGCTC GAAATGTTCA AGAACTCGTG TTAGATTTTT GTCCTGCTGA GCCATTTGAG 361 TTGCCATATT GTGTTGTGAC TTGTGAATCC TTGCGAGTTT TGAAATTACG GCTTGATGGG 421 TCTGTACTTA AGTTGTCTAA TCATTTTGGA TTTCATCAGC TTAAATTTCT TCATCTTGAA 481 AAAGTTGAGT TATCAAACG Predicted gene structure (within gDNA segment 21502 to 19794): Exon 1 20902 20404 ( 499 n); cDNA 1 499 ( 499 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E246727+ 1.000 499 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E246727+ (20902 20404) Alignment (genomic DNA sequence = upper lines): TTGCCGGATG ATATACTGCA CAATATACTT TCATATCTGT ACATCTTTGA TGTTGTTCAG 20843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCGGATG ATATACTGCA CAATATACTT TCATATCTGT ACATCTTTGA TGTTGTTCAG 60 CTAAGCATTT TATCGAAAAG ATGGAACTAT ATATGGAGGA CAATGCCTTA CTTGAATTTT 20783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGCATTT TATCGAAAAG ATGGAACTAT ATATGGAGGA CAATGCCTTA CTTGAATTTT 120 GATATTAATA GCTTTGGTTG TGAAAGGATT GATAGGCTTT GGGATATGGG TATGGCTGAG 20723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTAATA GCTTTGGTTG TGAAAGGATT GATAGGCTTT GGGATATGGG TATGGCTGAG 180 AAATTCAAAG ATTTTATCAA TTGGGTGTTG ATTAACCGAT GTGGGGATAG CCTTGTTTGT 20663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCAAAG ATTTTATCAA TTGGGTGTTG ATTAACCGAT GTGGGGATAG CCTTGTTTGT 240 TTTAAGCTTT GTTGTGGGGA TATTTTTGGT AAAAGGGCTA TTTTTCGATG GGTTCGTGTT 20603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGCTTT GTTGTGGGGA TATTTTTGGT AAAAGGGCTA TTTTTCGATG GGTTCGTGTT 300 GTGACAGCTC GAAATGTTCA AGAACTCGTG TTAGATTTTT GTCCTGCTGA GCCATTTGAG 20543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACAGCTC GAAATGTTCA AGAACTCGTG TTAGATTTTT GTCCTGCTGA GCCATTTGAG 360 TTGCCATATT GTGTTGTGAC TTGTGAATCC TTGCGAGTTT TGAAATTACG GCTTGATGGG 20483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCATATT GTGTTGTGAC TTGTGAATCC TTGCGAGTTT TGAAATTACG GCTTGATGGG 420 TCTGTACTTA AGTTGTCTAA TCATTTTGGA TTTCATCAGC TTAAATTTCT TCATCTTGAA 20423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTACTTA AGTTGTCTAA TCATTTTGGA TTTCATCAGC TTAAATTTCT TCATCTTGAA 480 AAAGTTGAGT TATCAAACG 20404 |||||||||| ||||||||| AAAGTTGAGT TATCAAACG 499 hqPGS_C09HBa0168F14.1-1-_SGN-E246727+ (20902 20404) ******************************************************************************** EST sequence 34 +strand 571 n (File: SGN-E342207+) 1 GGGAGCAACC AGAATTGTTA GCAGAATCTC CTGCTAGAAG GAAACGTATC GCTCAAGAAT 61 CTGGGAAAAC TGAGCAACAG GTGAGTCAAC TTGTTGCTCA ACTTTTTCAA ATGCGTGTAC 121 GTATGAAGAA TTTGATGGGC GTTATGGAAG GTGGTTCGAT TCCTGCACTG AGTAATCTAG 181 AGGAGGCACT AAAATCTGAA CAGCAGGCTC CTCCCGGTAC TGCAAGGAGG AAGCGAAGGT 241 CAGAACCAAG GAAACAATTT GCAGACTCGG GATCAGCTAG GCCTAGCCCT CGTGGTTTCG 301 GGGCCAAGAA CTGAAGTATA AGACTAGTAT GTCAAACAAA TTTTTGAATC TTTGACTAGC 361 TATCTATGAG TATCAACTAG AAAAAGGAAT TGTGAGCAAA AAAGGAAATG ATCAACTAGA 421 AAAGGGAAGT TCTTGACAAG ATAATATATA GTACATTGTA TGTACTCTCA ACTATATAGT 481 TTTGTCCCTC TTCTTGTGTA ACTATTGTCT TCTTGATATA TCTTATTATC TTGTAATCTT 541 GAAAATTTCA TTGTTTTTCC CAAAAAAAAA A Predicted gene structure (within gDNA segment 25731 to 23293): Exon 1 25131 25052 ( 80 n); cDNA 1 80 ( 80 n); score: 1.000 Intron 1 25051 24942 ( 110 n); Pd: 0.999 (s: 1.00), Pa: 0.820 (s: 1.00) Exon 2 24941 24816 ( 126 n); cDNA 81 206 ( 126 n); score: 1.000 Intron 2 24815 24349 ( 467 n); Pd: 0.998 (s: 1.00), Pa: 0.868 (s: 1.00) Exon 3 24348 23984 ( 365 n); cDNA 207 571 ( 365 n); score: 0.981 MATCH C09HBa0168F14.1-1- SGN-E342207+ 0.988 571 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E342207+ (25131 25052,24941 24816,24348 23984) Alignment (genomic DNA sequence = upper lines): GGGAGCAACC AGAATTGTTA GCAGAATCTC CTGCTAGAAG GAAACGTATC GCTCAAGAAT 25072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGCAACC AGAATTGTTA GCAGAATCTC CTGCTAGAAG GAAACGTATC GCTCAAGAAT 60 CTGGGAAAAC TGAGCAACAG GTAAATATCT GTGTGGAGTA CTGATGCTAA TATGCCATAA 25012 |||||||||| |||||||||| CTGGGAAAAC TGAGCAACAG .......... .......... .......... .......... 80 AACATAATTC TTTGTCGAAG AATGTTTGGT ACTCCTTGCA TGCACCTACA TAACTTATTG 24952 .......... .......... .......... .......... .......... .......... 80 CAATTCGTAG GTGAGTCAAC TTGTTGCTCA ACTTTTTCAA ATGCGTGTAC GTATGAAGAA 24892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTGAGTCAAC TTGTTGCTCA ACTTTTTCAA ATGCGTGTAC GTATGAAGAA 130 TTTGATGGGC GTTATGGAAG GTGGTTCGAT TCCTGCACTG AGTAATCTAG AGGAGGCACT 24832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGGGC GTTATGGAAG GTGGTTCGAT TCCTGCACTG AGTAATCTAG AGGAGGCACT 190 AAAATCTGAA CAGCAGGTGC CTATCTTGTC TAAATTTTTG GCTTAATTAC TTGTTATCAA 24772 |||||||||| |||||| AAAATCTGAA CAGCAG.... .......... .......... .......... .......... 206 ATTAGAATGT GTGGATATAG CAGTCAGTTC CAATTTTGAG CTCCTTACCT CCTTACTATG 24712 .......... .......... .......... .......... .......... .......... 206 CTGTAATCAT TTCTTCTTAC ATATTAGTCG TGGCGCGCAC AAACAGGCCC CAAACACCAT 24652 .......... .......... .......... .......... .......... .......... 206 ACTTATCGGG GAAAAAAAGA GTTCTTACAT AGTGTTTCTT TTCTCTTCCA ATATGCCTTC 24592 .......... .......... .......... .......... .......... .......... 206 AAGATTGTAA ATTCCACTTG TTCGAGGATA TGCTAATACA TCTGTTCGAT CTAATACACA 24532 .......... .......... .......... .......... .......... .......... 206 TTTCTATTGT ATGAGATGTA GAAACCTATT CTACTATGCA TTTGTTTTTT TGACTGGACT 24472 .......... .......... .......... .......... .......... .......... 206 TATACTCGAA AAGTGCATGT TTGTCATGTA TTCTTAGATT TGCACTTCTG TTATCTTATC 24412 .......... .......... .......... .......... .......... .......... 206 ATTCATTAGC TCTAACTTAA GCTGATGGAT TCGAATGGTC ATCTTGTTCC CTTCTTTCTT 24352 .......... .......... .......... .......... .......... .......... 206 CAGGCTCCTC CCGGTACTGC AAGGAGGAAG CGAAGGTCAG AACCAAGGAA ACAATTTGCA 24292 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCTCCTC CCGGTACTGC AAGGAGGAAG CGAAGGTCAG AACCAAGGAA ACAATTTGCA 263 GACTCGGGAT CAGCTAGGCC TAGCCCTCGT GGTTTCGGGG CCAAGAACTG AAGTATAAGA 24232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCGGGAT CAGCTAGGCC TAGCCCTCGT GGTTTCGGGG CCAAGAACTG AAGTATAAGA 323 CTAGTATGTC AAACAAATTT TTGAATCTTT GACTAGCTAT CTATGAGTAT CAACTAGAAA 24172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTATGTC AAACAAATTT TTGAATCTTT GACTAGCTAT CTATGAGTAT CAACTAGAAA 383 AAGGAATTGT GAGCAAAAAA GGAAATGATC AACTAGAAAA GGGAAGTTCT TGACAAGATA 24112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAATTGT GAGCAAAAAA GGAAATGATC AACTAGAAAA GGGAAGTTCT TGACAAGATA 443 ATATATAGTA CATTGTATGT ACTCTCAACT ATATAGTTTT GTCCCTCTTC TTGTGTAACT 24052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATATAGTA CATTGTATGT ACTCTCAACT ATATAGTTTT GTCCCTCTTC TTGTGTAACT 503 ATTGTCTTCT TGATATATCT TATTATCTTG TAATCTTGAA AATTTCATTG TTTTTCCCAC 23992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTGTCTTCT TGATATATCT TATTATCTTG TAATCTTGAA AATTTCATTG TTTTTCCCAA 563 TCCTTTAA 23984 || AAAAAAAA 571 hqPGS_C09HBa0168F14.1-1-_SGN-E342207+ (25131 25052,24941 24816,24348 23984) ******************************************************************************** EST sequence 33 +strand 503 n (File: SGN-E265643+) 1 TATCCTGACC GCATGGCTGG ACGTATTTTA GGAATGGGAG ATGTTCTATC GTTTGTTGAG 61 AAAGCCCAAG AAGTTATGCG TCAAGAAGAT GCTGAAGATT TGCAGAAGAA GATCATGAGT 121 GCAAAATTTG ATTTCAATGA CTTCCTGAAG CAAACTCGGG CAGTTGCTAG GATGGGTACC 181 ATGTCGCGTG TTATTGGTAT GATGCCTGGC ATGGGAAAGG TTACTCCTGC ACAAATTCGA 241 GAGGCAGAGA AGAGCTTAAA GATAATGGAG TCAATGATAG ATGTCATGAC ACCAGAGGAG 301 AGGGAGCAAC CAGAATTGTT AGCAGAATCT CCTGCTAGAA GGAAACGTAT CGCTCAAGAA 361 TCTGGGAAAA CTGAGCAACA GGTGAGTCAA CTTGTTGCTC AACTTTTTCA AATGCGTGTA 421 CGTATGAAGA ATTTGATGGG CGTTATGGAA GGTGGTTCGA TTCCTGCACT GAGTAATCTA 481 GAGGAGGCAC TAAAATCTGA ACA Predicted gene structure (within gDNA segment 26655 to 24210): Exon 1 26055 25981 ( 75 n); cDNA 1 75 ( 75 n); score: 1.000 Intron 1 25980 25892 ( 89 n); Pd: 0.945 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 25891 25748 ( 144 n); cDNA 76 219 ( 144 n); score: 1.000 Intron 2 25747 25483 ( 265 n); Pd: 0.994 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 3 25482 25407 ( 76 n); cDNA 220 295 ( 76 n); score: 1.000 Intron 3 25406 25138 ( 269 n); Pd: 0.881 (s: 1.00), Pa: 0.948 (s: 1.00) Exon 4 25137 25052 ( 86 n); cDNA 296 381 ( 86 n); score: 1.000 Intron 4 25051 24942 ( 110 n); Pd: 0.999 (s: 1.00), Pa: 0.820 (s: 1.00) Exon 5 24941 24820 ( 122 n); cDNA 382 503 ( 122 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E265643+ 1.000 503 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E265643+ (26055 25981,25891 25748,25482 25407,25137 25052,24941 24820) Alignment (genomic DNA sequence = upper lines): TATCCTGACC GCATGGCTGG ACGTATTTTA GGAATGGGAG ATGTTCTATC GTTTGTTGAG 25996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCTGACC GCATGGCTGG ACGTATTTTA GGAATGGGAG ATGTTCTATC GTTTGTTGAG 60 AAAGCCCAAG AAGTTGTAAG TGGCAAACAA GTATTAATGC TCCTATTTTT TTTCTTTTTA 25936 |||||||||| ||||| AAAGCCCAAG AAGTT..... .......... .......... .......... .......... 75 CTTGATTCAA GTAGTTTCAT TTGACTCCTT ATAAATGATT TTAGATGCGT CAAGAAGATG 25876 |||||| |||||||||| .......... .......... .......... .......... ....ATGCGT CAAGAAGATG 91 CTGAAGATTT GCAGAAGAAG ATCATGAGTG CAAAATTTGA TTTCAATGAC TTCCTGAAGC 25816 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGATTT GCAGAAGAAG ATCATGAGTG CAAAATTTGA TTTCAATGAC TTCCTGAAGC 151 AAACTCGGGC AGTTGCTAGG ATGGGTACCA TGTCGCGTGT TATTGGTATG ATGCCTGGCA 25756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTCGGGC AGTTGCTAGG ATGGGTACCA TGTCGCGTGT TATTGGTATG ATGCCTGGCA 211 TGGGAAAGGT AAAATACCCA GTTCTTGTTA AATCTATTTC TCCTTTCCAT GTCGTAATTA 25696 |||||||| TGGGAAAG.. .......... .......... .......... .......... .......... 219 TTGTATGGTG CAATTCATGT TTTACTAGCT ATCATACATA CTTTAACTTG CTACAAATGG 25636 .......... .......... .......... .......... .......... .......... 219 AACGACCGAT TTCAGGTCAA ACAATCAAAC AATGTTATCA ATTCTTAAAA AAAAAAGACG 25576 .......... .......... .......... .......... .......... .......... 219 ATCAAACGAT CAAACCTTAT ATTAGCTATA CTCCTTTGTT TTTATATAAT TGATGAAATG 25516 .......... .......... .......... .......... .......... .......... 219 GGACCAAATT CCTTCTTGTT CATGCATAAA CAGGTTACTC CTGCACAAAT TCGAGAGGCA 25456 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTTACTC CTGCACAAAT TCGAGAGGCA 246 GAGAAGAGCT TAAAGATAAT GGAGTCAATG ATAGATGTCA TGACACCAGG TTATATATCT 25396 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAGAAGAGCT TAAAGATAAT GGAGTCAATG ATAGATGTCA TGACACCAG. .......... 295 TACTTCGAGG TTTCTAAGGA CACGTGTTAC CTAAACATGC ATACTTCATC TGGTTAAATT 25336 .......... .......... .......... .......... .......... .......... 295 TGTTTCTTAT TTTCCTTTTT AGTCCGTTCT TTTTTTGGCA ACTCTGAACT TTCCACGTAG 25276 .......... .......... .......... .......... .......... .......... 295 AATGTTTAAG ACTACAAGAT TAAAGGACAT TTTGATACAT TCTACGTATC TTTAGTTGAA 25216 .......... .......... .......... .......... .......... .......... 295 AACCAGAATC AAATTGAAAA GGAAGGAGTA CTAGTGCTGC TAGCTCAATT CACATTTCAT 25156 .......... .......... .......... .......... .......... .......... 295 TTTCATCTTT TTTCTCAGAG GAGAGGGAGC AACCAGAATT GTTAGCAGAA TCTCCTGCTA 25096 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG GAGAGGGAGC AACCAGAATT GTTAGCAGAA TCTCCTGCTA 337 GAAGGAAACG TATCGCTCAA GAATCTGGGA AAACTGAGCA ACAGGTAAAT ATCTGTGTGG 25036 |||||||||| |||||||||| |||||||||| |||||||||| |||| GAAGGAAACG TATCGCTCAA GAATCTGGGA AAACTGAGCA ACAG...... .......... 381 AGTACTGATG CTAATATGCC ATAAAACATA ATTCTTTGTC GAAGAATGTT TGGTACTCCT 24976 .......... .......... .......... .......... .......... .......... 381 TGCATGCACC TACATAACTT ATTGCAATTC GTAGGTGAGT CAACTTGTTG CTCAACTTTT 24916 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTGAGT CAACTTGTTG CTCAACTTTT 407 TCAAATGCGT GTACGTATGA AGAATTTGAT GGGCGTTATG GAAGGTGGTT CGATTCCTGC 24856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAATGCGT GTACGTATGA AGAATTTGAT GGGCGTTATG GAAGGTGGTT CGATTCCTGC 467 ACTGAGTAAT CTAGAGGAGG CACTAAAATC TGAACA 24820 |||||||||| |||||||||| |||||||||| |||||| ACTGAGTAAT CTAGAGGAGG CACTAAAATC TGAACA 503 hqPGS_C09HBa0168F14.1-1-_SGN-E265643+ (26055 25981,25891 25748,25482 25407,25137 25052,24941 24820) ******************************************************************************** EST sequence 31 +strand 476 n (File: SGN-E318865+) 1 TTAGGAATGG GAGATGTTCT ATCGTTTGTT GAGAAAGCCC AAGAAGTTAT GCGTCAAGAA 61 GATGCTGAAG ATTTGCAGAA GAAGATCATG AGTGCAAAAT TTGATTTCAA TGACTTCCTG 121 AAGCAAACTC GGGCAGTTGC TAGGATGGGT ACCATGTCGC GTGTTATTGG TATGATGCCT 181 GGCATGGGAA AGGTTACTCC TGCACAAATT CGAGAGGCAG AGAAGAGCTT AAAGATAATG 241 GAGTCAATGA TAGATGTCAT GACACCAGAG GAGAGGGAGC AACCAGAATT GTTAGCAGAA 301 TCTCCTGCTA GAAGGAAACG TATCGCTCAA GAATCTGGGA AAACTGAGCA ACAGGTGAGT 361 CAACTTGTTG CTCAACTTTT TCAAATGCGT GTACGTATGA AGAATTTGAT GGGCGTTATG 421 GAAGGTGGTT CGATTCCTGC ACTGAGTAAT CTAGAGGAGG CACTAAAATC TGAACA Predicted gene structure (within gDNA segment 26628 to 24210): Exon 1 26028 25981 ( 48 n); cDNA 1 48 ( 48 n); score: 1.000 Intron 1 25980 25892 ( 89 n); Pd: 0.945 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 25891 25748 ( 144 n); cDNA 49 192 ( 144 n); score: 1.000 Intron 2 25747 25483 ( 265 n); Pd: 0.994 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 3 25482 25407 ( 76 n); cDNA 193 268 ( 76 n); score: 1.000 Intron 3 25406 25138 ( 269 n); Pd: 0.881 (s: 1.00), Pa: 0.948 (s: 1.00) Exon 4 25137 25052 ( 86 n); cDNA 269 354 ( 86 n); score: 1.000 Intron 4 25051 24942 ( 110 n); Pd: 0.999 (s: 1.00), Pa: 0.820 (s: 1.00) Exon 5 24941 24820 ( 122 n); cDNA 355 476 ( 122 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E318865+ 1.000 476 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E318865+ (26028 25981,25891 25748,25482 25407,25137 25052,24941 24820) Alignment (genomic DNA sequence = upper lines): TTAGGAATGG GAGATGTTCT ATCGTTTGTT GAGAAAGCCC AAGAAGTTGT AAGTGGCAAA 25969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTAGGAATGG GAGATGTTCT ATCGTTTGTT GAGAAAGCCC AAGAAGTT.. .......... 48 CAAGTATTAA TGCTCCTATT TTTTTTCTTT TTACTTGATT CAAGTAGTTT CATTTGACTC 25909 .......... .......... .......... .......... .......... .......... 48 CTTATAAATG ATTTTAGATG CGTCAAGAAG ATGCTGAAGA TTTGCAGAAG AAGATCATGA 25849 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......ATG CGTCAAGAAG ATGCTGAAGA TTTGCAGAAG AAGATCATGA 91 GTGCAAAATT TGATTTCAAT GACTTCCTGA AGCAAACTCG GGCAGTTGCT AGGATGGGTA 25789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCAAAATT TGATTTCAAT GACTTCCTGA AGCAAACTCG GGCAGTTGCT AGGATGGGTA 151 CCATGTCGCG TGTTATTGGT ATGATGCCTG GCATGGGAAA GGTAAAATAC CCAGTTCTTG 25729 |||||||||| |||||||||| |||||||||| |||||||||| | CCATGTCGCG TGTTATTGGT ATGATGCCTG GCATGGGAAA G......... .......... 192 TTAAATCTAT TTCTCCTTTC CATGTCGTAA TTATTGTATG GTGCAATTCA TGTTTTACTA 25669 .......... .......... .......... .......... .......... .......... 192 GCTATCATAC ATACTTTAAC TTGCTACAAA TGGAACGACC GATTTCAGGT CAAACAATCA 25609 .......... .......... .......... .......... .......... .......... 192 AACAATGTTA TCAATTCTTA AAAAAAAAAG ACGATCAAAC GATCAAACCT TATATTAGCT 25549 .......... .......... .......... .......... .......... .......... 192 ATACTCCTTT GTTTTTATAT AATTGATGAA ATGGGACCAA ATTCCTTCTT GTTCATGCAT 25489 .......... .......... .......... .......... .......... .......... 192 AAACAGGTTA CTCCTGCACA AATTCGAGAG GCAGAGAAGA GCTTAAAGAT AATGGAGTCA 25429 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTTA CTCCTGCACA AATTCGAGAG GCAGAGAAGA GCTTAAAGAT AATGGAGTCA 246 ATGATAGATG TCATGACACC AGGTTATATA TCTTACTTCG AGGTTTCTAA GGACACGTGT 25369 |||||||||| |||||||||| || ATGATAGATG TCATGACACC AG........ .......... .......... .......... 268 TACCTAAACA TGCATACTTC ATCTGGTTAA ATTTGTTTCT TATTTTCCTT TTTAGTCCGT 25309 .......... .......... .......... .......... .......... .......... 268 TCTTTTTTTG GCAACTCTGA ACTTTCCACG TAGAATGTTT AAGACTACAA GATTAAAGGA 25249 .......... .......... .......... .......... .......... .......... 268 CATTTTGATA CATTCTACGT ATCTTTAGTT GAAAACCAGA ATCAAATTGA AAAGGAAGGA 25189 .......... .......... .......... .......... .......... .......... 268 GTACTAGTGC TGCTAGCTCA ATTCACATTT CATTTTCATC TTTTTTCTCA GAGGAGAGGG 25129 ||||||||| .......... .......... .......... .......... .......... .AGGAGAGGG 277 AGCAACCAGA ATTGTTAGCA GAATCTCCTG CTAGAAGGAA ACGTATCGCT CAAGAATCTG 25069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACCAGA ATTGTTAGCA GAATCTCCTG CTAGAAGGAA ACGTATCGCT CAAGAATCTG 337 GGAAAACTGA GCAACAGGTA AATATCTGTG TGGAGTACTG ATGCTAATAT GCCATAAAAC 25009 |||||||||| ||||||| GGAAAACTGA GCAACAG... .......... .......... .......... .......... 354 ATAATTCTTT GTCGAAGAAT GTTTGGTACT CCTTGCATGC ACCTACATAA CTTATTGCAA 24949 .......... .......... .......... .......... .......... .......... 354 TTCGTAGGTG AGTCAACTTG TTGCTCAACT TTTTCAAATG CGTGTACGTA TGAAGAATTT 24889 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTG AGTCAACTTG TTGCTCAACT TTTTCAAATG CGTGTACGTA TGAAGAATTT 407 GATGGGCGTT ATGGAAGGTG GTTCGATTCC TGCACTGAGT AATCTAGAGG AGGCACTAAA 24829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGGCGTT ATGGAAGGTG GTTCGATTCC TGCACTGAGT AATCTAGAGG AGGCACTAAA 467 ATCTGAACA 24820 ||||||||| ATCTGAACA 476 hqPGS_C09HBa0168F14.1-1-_SGN-E318865+ (26028 25981,25891 25748,25482 25407,25137 25052,24941 24820) ******************************************************************************** EST sequence 17 +strand 664 n (File: SGN-E262707+) 1 TACACCTTAA CAATCTTTAT CTATATATCT TCTTTACGAG TACACAGAAT ATCTAAACAC 61 AACTTCATCC ATTCTCATGT TCACTGATAA GTGGGGGAAC AGGTTGATGT ACCTGTTTAT 121 GCAGCAGGAA CAGATGTAAA ACCTGCAGAA ATAGCCCGAC AAGGATTACA AGAGGCCAAA 181 AAGAAGAATG TAGATGTAGT CATAATGGAT ACAGCTGGAA GACTTCAGAT AGATAAAACT 241 ATGATGGATG AATTAAAAGA CGTGAAACGG GTACTGAACC CCACAGAGGT TTTACTTGTT 301 GTGGATGCAA TGACTGGCCA AGAAGCTGCA GCTTTGGTCA CAACATTCAA TCTCGAAATT 361 GGAATTACTG GTGCCATCTT GACGAAGCTA GATGGAGATT CTAGGGGTGG AGCAGCTTTA 421 AGTGTCAAGG AGGTATCAGG AAAGCCAATC AAGCTCGTAG GAAGGGGTGA ACGTATGGAG 481 GACCTTGAAC CTTTCTATCC TGACCGCATG GCTGGACGTA TTTTANGAAT GGGAGATGTT 541 CTATCGTTTG TTGAGAAAGC CCAAGAAGTT ATGCGTCAAG AAGATGCTGA AAGATTGCAG 601 AAGAAGATCA TGAGTGCAAA ATTTGATTTC AATGACTTCC TGAAGCAAAC TCCGGCAGTT 661 GCTA Predicted gene structure (within gDNA segment 28766 to 25080): Exon 1 28166 27939 ( 228 n); cDNA 1 228 ( 228 n); score: 1.000 Intron 1 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 2 27859 27757 ( 103 n); cDNA 229 331 ( 103 n); score: 1.000 Intron 2 27756 26841 ( 916 n); Pd: 0.872 (s: 1.00), Pa: 0.891 (s: 1.00) Exon 3 26840 26740 ( 101 n); cDNA 332 432 ( 101 n); score: 1.000 Intron 3 26739 26119 ( 621 n); Pd: 0.946 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 4 26118 25981 ( 138 n); cDNA 433 570 ( 138 n); score: 0.993 Intron 4 25980 25892 ( 89 n); Pd: 0.945 (s: 0.98), Pa: 0.999 (s: 0.94) Exon 5 25891 25798 ( 94 n); cDNA 571 664 ( 94 n); score: 0.957 MATCH C09HBa0168F14.1-1- SGN-E262707+ 0.992 664 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E262707+ (28166 27939,27859 27757,26840 26740,26118 25981,25891 25798) Alignment (genomic DNA sequence = upper lines): TACACCTTAA CAATCTTTAT CTATATATCT TCTTTACGAG TACACAGAAT ATCTAAACAC 28107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACACCTTAA CAATCTTTAT CTATATATCT TCTTTACGAG TACACAGAAT ATCTAAACAC 60 AACTTCATCC ATTCTCATGT TCACTGATAA GTGGGGGAAC AGGTTGATGT ACCTGTTTAT 28047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCATCC ATTCTCATGT TCACTGATAA GTGGGGGAAC AGGTTGATGT ACCTGTTTAT 120 GCAGCAGGAA CAGATGTAAA ACCTGCAGAA ATAGCCCGAC AAGGATTACA AGAGGCCAAA 27987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCAGGAA CAGATGTAAA ACCTGCAGAA ATAGCCCGAC AAGGATTACA AGAGGCCAAA 180 AAGAAGAATG TAGATGTAGT CATAATGGAT ACAGCTGGAA GACTTCAGGT CATATCATCT 27927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAGAAGAATG TAGATGTAGT CATAATGGAT ACAGCTGGAA GACTTCAG.. .......... 228 TAGTTTTTGA ATTCCACTAT AACTTTTTCT AGTAGTTGTA TTTAAACCTT TCTCTTAGTT 27867 .......... .......... .......... .......... .......... .......... 228 CTTGTAGATA GATAAAACTA TGATGGATGA ATTAAAAGAC GTGAAACGGG TACTGAACCC 27807 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ATA GATAAAACTA TGATGGATGA ATTAAAAGAC GTGAAACGGG TACTGAACCC 281 CACAGAGGTT TTACTTGTTG TGGATGCAAT GACTGGCCAA GAAGCTGCAG GTACTTCTAC 27747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGAGGTT TTACTTGTTG TGGATGCAAT GACTGGCCAA GAAGCTGCAG .......... 331 ACTCATAAAA CATGCAAATG ATCTATTACA TGCCACAGAC AGTTCGCTTC TTGTGAAATA 27687 .......... .......... .......... .......... .......... .......... 331 TGGCTTTTGA CTAGCATGGT CATATCACTT TTCACATGCT TTGATCTACA GCAAGGTCGC 27627 .......... .......... .......... .......... .......... .......... 331 ACTAATATTT ATGCTCTGTG GTTGATCGTT GAGGAACATC TTTTTTTTCT TAACCATGGA 27567 .......... .......... .......... .......... .......... .......... 331 CATTCACATA TTGCCAAAGA AGTGTATCTT GCCATGCATA CTTTTGACTT ACCACACTTG 27507 .......... .......... .......... .......... .......... .......... 331 CATTTTCATG TTCCAAGAAC TAACCGTCTG ATACGAAAAA CTTTCCTTAA CAATCCAGGC 27447 .......... .......... .......... .......... .......... .......... 331 CATTCTGTTA TCTGAGGTCT GCTTCTCACA GAGAGAGCAA AATATCTGTT GTTTGTGTAA 27387 .......... .......... .......... .......... .......... .......... 331 TGTTGCCACC GAGCGTTTTT CTCAAGAGAA CGTTATATTG CTTCTCATCG AAGCTTGGAG 27327 .......... .......... .......... .......... .......... .......... 331 ACTTATAGCA CAGCTGTATA TGACAGTTAA TTTCTTTCTT GTGCTTGTCT TGTACGAATA 27267 .......... .......... .......... .......... .......... .......... 331 TAAGTTATTT TTGGGACTTC ATTACATAAA TATGGATGTT ATCTTTGATA ATCTGAAGCT 27207 .......... .......... .......... .......... .......... .......... 331 GTTTAACTAT TTTAATACTC CCTCTATTCA CGCGACATGC TTGGTTGATA TGGAGTTTAA 27147 .......... .......... .......... .......... .......... .......... 331 GGAATTAGTT TCATTTACTT GAAACTTTTT TAGTCAGAAA AAAATAAACG GAATTGGTTT 27087 .......... .......... .......... .......... .......... .......... 331 TTTGAGGTTA ATGGAGAGAG GCATTCCATA TCTGAGTTGT TAAATGAATC TGAACTCTTG 27027 .......... .......... .......... .......... .......... .......... 331 AAATTTGTTA CTAGATAGTG CATTAAAATT CTGTAACATC TCAAAACAGA AATCATAGTA 26967 .......... .......... .......... .......... .......... .......... 331 CTGCACTTTC ATTGAGTTAT TACTGACACA AGGACATAAT TTCTGCCCTA TACCAATCAT 26907 .......... .......... .......... .......... .......... .......... 331 TTCATGTTGA AAACAGAAAA TTCCGATTTG TTTTCTCTCT TATCGTTCAC ATTGATGAAA 26847 .......... .......... .......... .......... .......... .......... 331 TTGTAGCTTT GGTCACAACA TTCAATCTCG AAATTGGAAT TACTGGTGCC ATCTTGACGA 26787 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......CTTT GGTCACAACA TTCAATCTCG AAATTGGAAT TACTGGTGCC ATCTTGACGA 385 AGCTAGATGG AGATTCTAGG GGTGGAGCAG CTTTAAGTGT CAAGGAGGTG GGGTCTTTTT 26727 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGCTAGATGG AGATTCTAGG GGTGGAGCAG CTTTAAGTGT CAAGGAG... .......... 432 ACTACACGAC ACATACATTC GTTTTTTCCT TGTTCTAAGT TTAACCTTGC AGTTTACTTT 26667 .......... .......... .......... .......... .......... .......... 432 GCTTCAACTT CTCTTGATTA GCAAAGTCAA CATTTCTACT TTTGAACTTA GAGCAGCAAA 26607 .......... .......... .......... .......... .......... .......... 432 GATGAAGGAG AGTTAATGAT GGAAGTAGAT GATTATAAAT ATCCAAAAGC TTTTCTTCCT 26547 .......... .......... .......... .......... .......... .......... 432 TGAAGGGATC ATGCGGCGAA ACAAATACTA AAACGTAAAG AGTGATTGGA CCACAAACTT 26487 .......... .......... .......... .......... .......... .......... 432 CAGATTTCCT CTATGTTCAA CATGTCTTTT GCGTATTATC TTGGAAGAAA TTTACTTTTG 26427 .......... .......... .......... .......... .......... .......... 432 TCAAGGTTTA AACTGAATGG AATAGATTTG AAGCCAATAG GCAATTGATG ATATCTGTTT 26367 .......... .......... .......... .......... .......... .......... 432 AAGTGGTTGT GTCAAATGTT GCCAATATGG GTCACAAGTT ACAACAGAAC AACAACCCAG 26307 .......... .......... .......... .......... .......... .......... 432 TGTAGTCCGA CATGTGTGTA ATGGGGAGGG GAGGATGTAA GCAGATCTTA CTCCTACCTT 26247 .......... .......... .......... .......... .......... .......... 432 TTATGGGGTA GAGATTGTAC ACGAATCATA TGTATAGACA AAAAAAATCA CTGATTGCTC 26187 .......... .......... .......... .......... .......... .......... 432 TTTAACGGTC AGGTTTTTGG TTAAATGAAC TAAGATTGTG CATCACAATT ATATGTTCAC 26127 .......... .......... .......... .......... .......... .......... 432 TACCACAGGT ATCAGGAAAG CCAATCAAGC TCGTAGGAAG GGGTGAACGT ATGGAGGACC 26067 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT ATCAGGAAAG CCAATCAAGC TCGTAGGAAG GGGTGAACGT ATGGAGGACC 484 TTGAACCTTT CTATCCTGAC CGCATGGCTG GACGTATTTT AGGAATGGGA GATGTTCTAT 26007 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TTGAACCTTT CTATCCTGAC CGCATGGCTG GACGTATTTT ANGAATGGGA GATGTTCTAT 544 CGTTTGTTGA GAAAGCCCAA GAAGTTGTAA GTGGCAAACA AGTATTAATG CTCCTATTTT 25947 |||||||||| |||||||||| |||||| CGTTTGTTGA GAAAGCCCAA GAAGTT.... .......... .......... .......... 570 TTTTCTTTTT ACTTGATTCA AGTAGTTTCA TTTGACTCCT TATAAATGAT TTTAGATGCG 25887 ||||| .......... .......... .......... .......... .......... .....ATGCG 575 TCAAGAAGAT GCTGAAGATT TGCAGAAGAA GATCATGAGT GCAAAATTTG ATTTCAATGA 25827 |||||||||| |||||| | |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAAGAT GCTGAAAGAT TGCAGAAGAA GATCATGAGT GCAAAATTTG ATTTCAATGA 635 CTTCCTGAAG CAAACTCGGG CAGTTGCTA 25798 |||||||||| ||||||| || ||||||||| CTTCCTGAAG CAAACTCCGG CAGTTGCTA 664 hqPGS_C09HBa0168F14.1-1-_SGN-E262707+ (28166 27939,27859 27757,26840 26740,26118 25981,25891 25798) ******************************************************************************** EST sequence 46 +strand 558 n (File: SGN-E266514+) 1 CAACTTGTTA TTTTGGGTAA ACAGGTTGAT GTACCTGTTT ATGCAGCAGG AACAGATGTA 61 AAACCTGCAG AAATAGCCCG ACAAGGATTA CAAGAGGCCA AAAAGAAGAA TGTAGATGTA 121 GTCATAATGG ATACAGCTGG AAGACTTCAG ATAGATAAAA CTATGATGGA TGAATTAAAA 181 GACGTGAAAC GGGTACTGAA CCCCACAGAG GTTTTACTTG TTGTGGATGC AATGACTGGC 241 CAAGAAGCTG CAGCTTTGGT CACAACATTC AATCTCGAAA TTGGAATTAC TGGTGCCATC 301 TTGACGAAGC TAGATGGAGA TTCTAGGGGT GGAGCAGCTT TAAGTGTCAA GGAGGTATCA 361 AGAAAGCCAA TCAAGCTCGT AGGAAGGGGT GAACGTATGG AGGACCTTGA ACCTTTCTAT 421 CCTGACCGCA TGGCTGGACG TATTTTAGGA ATGGGAGATG TTCTATCGTT TGTCGAGAAA 481 GCCCAAGAAG TTATGCGTCA AGAAGATGCT GAAGATCTGC AGAAGAAGAT CATGAGTGCA 541 AAATTTGATT TCAATGAC Predicted gene structure (within gDNA segment 28859 to 25216): Exon 1 28260 28237 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000 Intron 1 28236 28065 ( 172 n); Pd: 0.970 (s: 0), Pa: 0.977 (s: 1.00) Exon 2 28064 27939 ( 126 n); cDNA 25 150 ( 126 n); score: 1.000 Intron 2 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 27859 27757 ( 103 n); cDNA 151 253 ( 103 n); score: 1.000 Intron 3 27756 26841 ( 916 n); Pd: 0.872 (s: 1.00), Pa: 0.891 (s: 1.00) Exon 4 26840 26740 ( 101 n); cDNA 254 354 ( 101 n); score: 1.000 Intron 4 26739 26119 ( 621 n); Pd: 0.946 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 5 26118 25981 ( 138 n); cDNA 355 492 ( 138 n); score: 0.986 Intron 5 25980 25892 ( 89 n); Pd: 0.945 (s: 0.98), Pa: 0.999 (s: 0.98) Exon 6 25891 25826 ( 66 n); cDNA 493 558 ( 66 n); score: 0.985 MATCH C09HBa0168F14.1-1- SGN-E266514+ 0.994 558 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E266514+ (28260 28237,28064 27939,27859 27757,26840 26740,26118 25981,25891 25826) Alignment (genomic DNA sequence = upper lines): CAACTTGTTA TTTTGGGTAA ACAGGTGTGC CATGTCACAT TAGCAACAAT AAGATTATAT 28201 |||||||||| |||||||||| |||| CAACTTGTTA TTTTGGGTAA ACAG...... .......... .......... .......... 24 ATCATTTTAT TTTAGATGCT TCTTTCTGTT CTTCTACACC TTAACAATCT TTATCTATAT 28141 .......... .......... .......... .......... .......... .......... 24 ATCTTCTTTA CGAGTACACA GAATATCTAA ACACAACTTC ATCCATTCTC ATGTTCACTG 28081 .......... .......... .......... .......... .......... .......... 24 ATAAGTGGGG GAACAGGTTG ATGTACCTGT TTATGCAGCA GGAACAGATG TAAAACCTGC 28021 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTTG ATGTACCTGT TTATGCAGCA GGAACAGATG TAAAACCTGC 68 AGAAATAGCC CGACAAGGAT TACAAGAGGC CAAAAAGAAG AATGTAGATG TAGTCATAAT 27961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATAGCC CGACAAGGAT TACAAGAGGC CAAAAAGAAG AATGTAGATG TAGTCATAAT 128 GGATACAGCT GGAAGACTTC AGGTCATATC ATCTTAGTTT TTGAATTCCA CTATAACTTT 27901 |||||||||| |||||||||| || GGATACAGCT GGAAGACTTC AG........ .......... .......... .......... 150 TTCTAGTAGT TGTATTTAAA CCTTTCTCTT AGTTCTTGTA GATAGATAAA ACTATGATGG 27841 ||||||||| |||||||||| .......... .......... .......... .......... .ATAGATAAA ACTATGATGG 169 ATGAATTAAA AGACGTGAAA CGGGTACTGA ACCCCACAGA GGTTTTACTT GTTGTGGATG 27781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATTAAA AGACGTGAAA CGGGTACTGA ACCCCACAGA GGTTTTACTT GTTGTGGATG 229 CAATGACTGG CCAAGAAGCT GCAGGTACTT CTACACTCAT AAAACATGCA AATGATCTAT 27721 |||||||||| |||||||||| |||| CAATGACTGG CCAAGAAGCT GCAG...... .......... .......... .......... 253 TACATGCCAC AGACAGTTCG CTTCTTGTGA AATATGGCTT TTGACTAGCA TGGTCATATC 27661 .......... .......... .......... .......... .......... .......... 253 ACTTTTCACA TGCTTTGATC TACAGCAAGG TCGCACTAAT ATTTATGCTC TGTGGTTGAT 27601 .......... .......... .......... .......... .......... .......... 253 CGTTGAGGAA CATCTTTTTT TTCTTAACCA TGGACATTCA CATATTGCCA AAGAAGTGTA 27541 .......... .......... .......... .......... .......... .......... 253 TCTTGCCATG CATACTTTTG ACTTACCACA CTTGCATTTT CATGTTCCAA GAACTAACCG 27481 .......... .......... .......... .......... .......... .......... 253 TCTGATACGA AAAACTTTCC TTAACAATCC AGGCCATTCT GTTATCTGAG GTCTGCTTCT 27421 .......... .......... .......... .......... .......... .......... 253 CACAGAGAGA GCAAAATATC TGTTGTTTGT GTAATGTTGC CACCGAGCGT TTTTCTCAAG 27361 .......... .......... .......... .......... .......... .......... 253 AGAACGTTAT ATTGCTTCTC ATCGAAGCTT GGAGACTTAT AGCACAGCTG TATATGACAG 27301 .......... .......... .......... .......... .......... .......... 253 TTAATTTCTT TCTTGTGCTT GTCTTGTACG AATATAAGTT ATTTTTGGGA CTTCATTACA 27241 .......... .......... .......... .......... .......... .......... 253 TAAATATGGA TGTTATCTTT GATAATCTGA AGCTGTTTAA CTATTTTAAT ACTCCCTCTA 27181 .......... .......... .......... .......... .......... .......... 253 TTCACGCGAC ATGCTTGGTT GATATGGAGT TTAAGGAATT AGTTTCATTT ACTTGAAACT 27121 .......... .......... .......... .......... .......... .......... 253 TTTTTAGTCA GAAAAAAATA AACGGAATTG GTTTTTTGAG GTTAATGGAG AGAGGCATTC 27061 .......... .......... .......... .......... .......... .......... 253 CATATCTGAG TTGTTAAATG AATCTGAACT CTTGAAATTT GTTACTAGAT AGTGCATTAA 27001 .......... .......... .......... .......... .......... .......... 253 AATTCTGTAA CATCTCAAAA CAGAAATCAT AGTACTGCAC TTTCATTGAG TTATTACTGA 26941 .......... .......... .......... .......... .......... .......... 253 CACAAGGACA TAATTTCTGC CCTATACCAA TCATTTCATG TTGAAAACAG AAAATTCCGA 26881 .......... .......... .......... .......... .......... .......... 253 TTTGTTTTCT CTCTTATCGT TCACATTGAT GAAATTGTAG CTTTGGTCAC AACATTCAAT 26821 |||||||||| |||||||||| .......... .......... .......... .......... CTTTGGTCAC AACATTCAAT 273 CTCGAAATTG GAATTACTGG TGCCATCTTG ACGAAGCTAG ATGGAGATTC TAGGGGTGGA 26761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAAATTG GAATTACTGG TGCCATCTTG ACGAAGCTAG ATGGAGATTC TAGGGGTGGA 333 GCAGCTTTAA GTGTCAAGGA GGTGGGGTCT TTTTACTACA CGACACATAC ATTCGTTTTT 26701 |||||||||| |||||||||| | GCAGCTTTAA GTGTCAAGGA G......... .......... .......... .......... 354 TCCTTGTTCT AAGTTTAACC TTGCAGTTTA CTTTGCTTCA ACTTCTCTTG ATTAGCAAAG 26641 .......... .......... .......... .......... .......... .......... 354 TCAACATTTC TACTTTTGAA CTTAGAGCAG CAAAGATGAA GGAGAGTTAA TGATGGAAGT 26581 .......... .......... .......... .......... .......... .......... 354 AGATGATTAT AAATATCCAA AAGCTTTTCT TCCTTGAAGG GATCATGCGG CGAAACAAAT 26521 .......... .......... .......... .......... .......... .......... 354 ACTAAAACGT AAAGAGTGAT TGGACCACAA ACTTCAGATT TCCTCTATGT TCAACATGTC 26461 .......... .......... .......... .......... .......... .......... 354 TTTTGCGTAT TATCTTGGAA GAAATTTACT TTTGTCAAGG TTTAAACTGA ATGGAATAGA 26401 .......... .......... .......... .......... .......... .......... 354 TTTGAAGCCA ATAGGCAATT GATGATATCT GTTTAAGTGG TTGTGTCAAA TGTTGCCAAT 26341 .......... .......... .......... .......... .......... .......... 354 ATGGGTCACA AGTTACAACA GAACAACAAC CCAGTGTAGT CCGACATGTG TGTAATGGGG 26281 .......... .......... .......... .......... .......... .......... 354 AGGGGAGGAT GTAAGCAGAT CTTACTCCTA CCTTTTATGG GGTAGAGATT GTACACGAAT 26221 .......... .......... .......... .......... .......... .......... 354 CATATGTATA GACAAAAAAA ATCACTGATT GCTCTTTAAC GGTCAGGTTT TTGGTTAAAT 26161 .......... .......... .......... .......... .......... .......... 354 GAACTAAGAT TGTGCATCAC AATTATATGT TCACTACCAC AGGTATCAGG AAAGCCAATC 26101 |||||| | |||||||||| .......... .......... .......... .......... ..GTATCAAG AAAGCCAATC 372 AAGCTCGTAG GAAGGGGTGA ACGTATGGAG GACCTTGAAC CTTTCTATCC TGACCGCATG 26041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTCGTAG GAAGGGGTGA ACGTATGGAG GACCTTGAAC CTTTCTATCC TGACCGCATG 432 GCTGGACGTA TTTTAGGAAT GGGAGATGTT CTATCGTTTG TTGAGAAAGC CCAAGAAGTT 25981 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCTGGACGTA TTTTAGGAAT GGGAGATGTT CTATCGTTTG TCGAGAAAGC CCAAGAAGTT 492 GTAAGTGGCA AACAAGTATT AATGCTCCTA TTTTTTTTCT TTTTACTTGA TTCAAGTAGT 25921 .......... .......... .......... .......... .......... .......... 492 TTCATTTGAC TCCTTATAAA TGATTTTAGA TGCGTCAAGA AGATGCTGAA GATTTGCAGA 25861 | |||||||||| |||||||||| ||| |||||| .......... .......... .........A TGCGTCAAGA AGATGCTGAA GATCTGCAGA 523 AGAAGATCAT GAGTGCAAAA TTTGATTTCA ATGAC 25826 |||||||||| |||||||||| |||||||||| ||||| AGAAGATCAT GAGTGCAAAA TTTGATTTCA ATGAC 558 hqPGS_C09HBa0168F14.1-1-_SGN-E266514+ (28260 28237,28064 27939,27859 27757,26840 26740,26118 25981,25891 25826) ******************************************************************************** EST sequence 42 +strand 464 n (File: SGN-E246312+) 1 CGGTCTACAA GGTGTTGGGA AGACAACTGT TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA 61 GCAGGGTAAG AGTTGCATGC TGATTGCTGG AGACGTGTAC AGACCTGCTG CTATTGACCA 121 ACTTGTTATT TTGGGTAAAC AGGTTGATGT ACCTGTTTAT GCAGCAGGAA CAGATGTAAA 181 ACCTGCAGAA ATAGCCCGAC AAGGATTACA AGAGGCCAAA AAGAAGAATG TAGATGTAGT 241 CATAATGGAT ACAGCTGGAA GACTTCAGAT AGATAAAACT ATGATGGATG AATTAAAAGA 301 CGTGAAACGG GTACTGAACC CCACAGAGGT TTTACTTGTT GTGGATGCAA TGACTGGCCA 361 AGAAGCTGCA GCTTTGGTCA CAACATTCAA TCTCGAAATT GGAATTACTG GTGCCATCTT 421 GACGAAGCTA GATGGAGATT CTAGGGGTGG AGCAGCTTTA AGTG Predicted gene structure (within gDNA segment 29179 to 26138): Exon 1 28579 28516 ( 64 n); cDNA 1 64 ( 64 n); score: 1.000 Intron 1 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 28314 28237 ( 78 n); cDNA 65 142 ( 78 n); score: 1.000 Intron 2 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 28064 27939 ( 126 n); cDNA 143 268 ( 126 n); score: 1.000 Intron 3 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 27859 27757 ( 103 n); cDNA 269 371 ( 103 n); score: 1.000 Intron 4 27756 26841 ( 916 n); Pd: 0.872 (s: 1.00), Pa: 0.891 (s: 1.00) Exon 5 26840 26748 ( 93 n); cDNA 372 464 ( 93 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E246312+ 1.000 464 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E246312+ (28579 28516,28314 28237,28064 27939,27859 27757,26840 26748) Alignment (genomic DNA sequence = upper lines): CGGTCTACAA GGTGTTGGGA AGACAACTGT TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA 28520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTCTACAA GGTGTTGGGA AGACAACTGT TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA 60 GCAGGTGGAC TTCCAAACTT CACCTTCTCC CTTTCCTGAC CTTCCTTTAC TTTCTCTCAC 28460 |||| GCAG...... .......... .......... .......... .......... .......... 64 TCCCCTCTCT CTTGCTCATT CTATTGCAAT TTACATATAT GGTCGTAGAA CCTGCATTTC 28400 .......... .......... .......... .......... .......... .......... 64 TCCAAGTGCC TTCTAATATT AGCATTTTCC CTTTTTCTCA TTCTATTGTC AAACCATTTA 28340 .......... .......... .......... .......... .......... .......... 64 TGGGCACTGG TGGCATGGTC TGCAGGGTAA GAGTTGCATG CTGATTGCTG GAGACGTGTA 28280 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGTAA GAGTTGCATG CTGATTGCTG GAGACGTGTA 99 CAGACCTGCT GCTATTGACC AACTTGTTAT TTTGGGTAAA CAGGTGTGCC ATGTCACATT 28220 |||||||||| |||||||||| |||||||||| |||||||||| ||| CAGACCTGCT GCTATTGACC AACTTGTTAT TTTGGGTAAA CAG....... .......... 142 AGCAACAATA AGATTATATA TCATTTTATT TTAGATGCTT CTTTCTGTTC TTCTACACCT 28160 .......... .......... .......... .......... .......... .......... 142 TAACAATCTT TATCTATATA TCTTCTTTAC GAGTACACAG AATATCTAAA CACAACTTCA 28100 .......... .......... .......... .......... .......... .......... 142 TCCATTCTCA TGTTCACTGA TAAGTGGGGG AACAGGTTGA TGTACCTGTT TATGCAGCAG 28040 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTTGA TGTACCTGTT TATGCAGCAG 167 GAACAGATGT AAAACCTGCA GAAATAGCCC GACAAGGATT ACAAGAGGCC AAAAAGAAGA 27980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAGATGT AAAACCTGCA GAAATAGCCC GACAAGGATT ACAAGAGGCC AAAAAGAAGA 227 ATGTAGATGT AGTCATAATG GATACAGCTG GAAGACTTCA GGTCATATCA TCTTAGTTTT 27920 |||||||||| |||||||||| |||||||||| |||||||||| | ATGTAGATGT AGTCATAATG GATACAGCTG GAAGACTTCA G......... .......... 268 TGAATTCCAC TATAACTTTT TCTAGTAGTT GTATTTAAAC CTTTCTCTTA GTTCTTGTAG 27860 .......... .......... .......... .......... .......... .......... 268 ATAGATAAAA CTATGATGGA TGAATTAAAA GACGTGAAAC GGGTACTGAA CCCCACAGAG 27800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATAAAA CTATGATGGA TGAATTAAAA GACGTGAAAC GGGTACTGAA CCCCACAGAG 328 GTTTTACTTG TTGTGGATGC AATGACTGGC CAAGAAGCTG CAGGTACTTC TACACTCATA 27740 |||||||||| |||||||||| |||||||||| |||||||||| ||| GTTTTACTTG TTGTGGATGC AATGACTGGC CAAGAAGCTG CAG....... .......... 371 AAACATGCAA ATGATCTATT ACATGCCACA GACAGTTCGC TTCTTGTGAA ATATGGCTTT 27680 .......... .......... .......... .......... .......... .......... 371 TGACTAGCAT GGTCATATCA CTTTTCACAT GCTTTGATCT ACAGCAAGGT CGCACTAATA 27620 .......... .......... .......... .......... .......... .......... 371 TTTATGCTCT GTGGTTGATC GTTGAGGAAC ATCTTTTTTT TCTTAACCAT GGACATTCAC 27560 .......... .......... .......... .......... .......... .......... 371 ATATTGCCAA AGAAGTGTAT CTTGCCATGC ATACTTTTGA CTTACCACAC TTGCATTTTC 27500 .......... .......... .......... .......... .......... .......... 371 ATGTTCCAAG AACTAACCGT CTGATACGAA AAACTTTCCT TAACAATCCA GGCCATTCTG 27440 .......... .......... .......... .......... .......... .......... 371 TTATCTGAGG TCTGCTTCTC ACAGAGAGAG CAAAATATCT GTTGTTTGTG TAATGTTGCC 27380 .......... .......... .......... .......... .......... .......... 371 ACCGAGCGTT TTTCTCAAGA GAACGTTATA TTGCTTCTCA TCGAAGCTTG GAGACTTATA 27320 .......... .......... .......... .......... .......... .......... 371 GCACAGCTGT ATATGACAGT TAATTTCTTT CTTGTGCTTG TCTTGTACGA ATATAAGTTA 27260 .......... .......... .......... .......... .......... .......... 371 TTTTTGGGAC TTCATTACAT AAATATGGAT GTTATCTTTG ATAATCTGAA GCTGTTTAAC 27200 .......... .......... .......... .......... .......... .......... 371 TATTTTAATA CTCCCTCTAT TCACGCGACA TGCTTGGTTG ATATGGAGTT TAAGGAATTA 27140 .......... .......... .......... .......... .......... .......... 371 GTTTCATTTA CTTGAAACTT TTTTAGTCAG AAAAAAATAA ACGGAATTGG TTTTTTGAGG 27080 .......... .......... .......... .......... .......... .......... 371 TTAATGGAGA GAGGCATTCC ATATCTGAGT TGTTAAATGA ATCTGAACTC TTGAAATTTG 27020 .......... .......... .......... .......... .......... .......... 371 TTACTAGATA GTGCATTAAA ATTCTGTAAC ATCTCAAAAC AGAAATCATA GTACTGCACT 26960 .......... .......... .......... .......... .......... .......... 371 TTCATTGAGT TATTACTGAC ACAAGGACAT AATTTCTGCC CTATACCAAT CATTTCATGT 26900 .......... .......... .......... .......... .......... .......... 371 TGAAAACAGA AAATTCCGAT TTGTTTTCTC TCTTATCGTT CACATTGATG AAATTGTAGC 26840 | .......... .......... .......... .......... .......... .........C 372 TTTGGTCACA ACATTCAATC TCGAAATTGG AATTACTGGT GCCATCTTGA CGAAGCTAGA 26780 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTCACA ACATTCAATC TCGAAATTGG AATTACTGGT GCCATCTTGA CGAAGCTAGA 432 TGGAGATTCT AGGGGTGGAG CAGCTTTAAG TG 26748 |||||||||| |||||||||| |||||||||| || TGGAGATTCT AGGGGTGGAG CAGCTTTAAG TG 464 hqPGS_C09HBa0168F14.1-1-_SGN-E246312+ (28579 28516,28314 28237,28064 27939,27859 27757,26840 26748) ******************************************************************************** EST sequence 43 +strand 664 n (File: SGN-E332839+) 1 TTTTAGAAGC TGATGTTAGT CTCCCAGTTG TCAGAAGGTT TGTTCAGTCT GTTAGTGAAG 61 AAGCCGTTGG CACTGGTTTG ATTCGAGGTG TAAAACCAGA TCAGCAACTA GTTAAGACTG 121 TACGTGACGA GCTTGTGAAA CTGATGGGTG GAGAGGTTTC TGAACTGGTT TTTGCTAAAT 181 CTAAGCCCAC CGTAATACTA TTGGCCGGTC TACAAGGTGT TGGGAAGACA ACTGTTAGTG 241 CAAAGTTAGC TTTATATCTA AAGAAGCAGG GTAAGAGTTG CATGCTGATT GCTGGAGACG 301 TGTACAGACC TGCTGCTATT GACCAACTTG TTATTTTGGG TAAACAGGTT GATGTACCTG 361 TTTATGCAGC AGGAACAGAT GTAAAACCTG CAGAAATAGC CCGACAAGGA TTACAAGAGG 421 CCAAAAAGAA GAATGTAGAT GTAGTCATAA TGGATACAGC TGGAAGACTT CAGATAGATA 481 AAACTATGAT GGATGAATTA AAAGACGTGA AACGGGTACT GAACCCCACA GAGGTTTTAC 541 TTGTTGTGGA TGCAATGACT GGCCAAGAAG CTGCAGCTTT GGTCACAACA TTCAATCTCG 601 AAATTTGGAT TACTGGTGCC ATCTTGACGA AGCTAGATGG AGATTCTAGG GGTGGAGCAG 661 CTTT Predicted gene structure (within gDNA segment 29652 to 26143): Exon 1 28999 28986 ( 14 n); cDNA 1 14 ( 14 n); score: 1.000 Intron 1 28985 28913 ( 73 n); Pd: 0.976 (s: 0), Pa: 0.920 (s: 1.00) Exon 2 28912 28811 ( 102 n); cDNA 15 116 ( 102 n); score: 1.000 Intron 2 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 28668 28516 ( 153 n); cDNA 117 269 ( 153 n); score: 1.000 Intron 3 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 28314 28237 ( 78 n); cDNA 270 347 ( 78 n); score: 1.000 Intron 4 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 5 28064 27939 ( 126 n); cDNA 348 473 ( 126 n); score: 1.000 Intron 5 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 6 27859 27757 ( 103 n); cDNA 474 576 ( 103 n); score: 1.000 Intron 6 27756 26841 ( 916 n); Pd: 0.872 (s: 1.00), Pa: 0.891 (s: 0.96) Exon 7 26840 26753 ( 88 n); cDNA 577 664 ( 88 n); score: 0.977 MATCH C09HBa0168F14.1-1- SGN-E332839+ 0.997 664 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E332839+ (28999 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26753) Alignment (genomic DNA sequence = upper lines): TTTTAGAAGC TGATGTATGT TGCTTACTGT TTCAACAACT AATCTCTATA CATAAAATTT 28940 |||||||||| |||| TTTTAGAAGC TGAT...... .......... .......... .......... .......... 14 CGCCGCTTAT TTAACTTTAA TCGGCAGGTT AGTCTCCCAG TTGTCAGAAG GTTTGTTCAG 28880 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT AGTCTCCCAG TTGTCAGAAG GTTTGTTCAG 47 TCTGTTAGTG AAGAAGCCGT TGGCACTGGT TTGATTCGAG GTGTAAAACC AGATCAGCAA 28820 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTTAGTG AAGAAGCCGT TGGCACTGGT TTGATTCGAG GTGTAAAACC AGATCAGCAA 107 CTAGTTAAGG TATGTATTTT TGAACTGATG ACTCTGAACA ATACACATTT GTACATTGAT 28760 ||||||||| CTAGTTAAG. .......... .......... .......... .......... .......... 116 AACAGACGGT CACCCTTCTG TTGTTAATTG CTTGCACAAT TTGCTATCAG CTCGATCTGA 28700 .......... .......... .......... .......... .......... .......... 116 ACATTTTCTT TGTCTCATTT GGTTGGTGTA GACTGTACGT GACGAGCTTG TGAAACTGAT 28640 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ACTGTACGT GACGAGCTTG TGAAACTGAT 145 GGGTGGAGAG GTTTCTGAAC TGGTTTTTGC TAAATCTAAG CCCACCGTAA TACTATTGGC 28580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGAGAG GTTTCTGAAC TGGTTTTTGC TAAATCTAAG CCCACCGTAA TACTATTGGC 205 CGGTCTACAA GGTGTTGGGA AGACAACTGT TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA 28520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTCTACAA GGTGTTGGGA AGACAACTGT TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA 265 GCAGGTGGAC TTCCAAACTT CACCTTCTCC CTTTCCTGAC CTTCCTTTAC TTTCTCTCAC 28460 |||| GCAG...... .......... .......... .......... .......... .......... 269 TCCCCTCTCT CTTGCTCATT CTATTGCAAT TTACATATAT GGTCGTAGAA CCTGCATTTC 28400 .......... .......... .......... .......... .......... .......... 269 TCCAAGTGCC TTCTAATATT AGCATTTTCC CTTTTTCTCA TTCTATTGTC AAACCATTTA 28340 .......... .......... .......... .......... .......... .......... 269 TGGGCACTGG TGGCATGGTC TGCAGGGTAA GAGTTGCATG CTGATTGCTG GAGACGTGTA 28280 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GGTAA GAGTTGCATG CTGATTGCTG GAGACGTGTA 304 CAGACCTGCT GCTATTGACC AACTTGTTAT TTTGGGTAAA CAGGTGTGCC ATGTCACATT 28220 |||||||||| |||||||||| |||||||||| |||||||||| ||| CAGACCTGCT GCTATTGACC AACTTGTTAT TTTGGGTAAA CAG....... .......... 347 AGCAACAATA AGATTATATA TCATTTTATT TTAGATGCTT CTTTCTGTTC TTCTACACCT 28160 .......... .......... .......... .......... .......... .......... 347 TAACAATCTT TATCTATATA TCTTCTTTAC GAGTACACAG AATATCTAAA CACAACTTCA 28100 .......... .......... .......... .......... .......... .......... 347 TCCATTCTCA TGTTCACTGA TAAGTGGGGG AACAGGTTGA TGTACCTGTT TATGCAGCAG 28040 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTTGA TGTACCTGTT TATGCAGCAG 372 GAACAGATGT AAAACCTGCA GAAATAGCCC GACAAGGATT ACAAGAGGCC AAAAAGAAGA 27980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAGATGT AAAACCTGCA GAAATAGCCC GACAAGGATT ACAAGAGGCC AAAAAGAAGA 432 ATGTAGATGT AGTCATAATG GATACAGCTG GAAGACTTCA GGTCATATCA TCTTAGTTTT 27920 |||||||||| |||||||||| |||||||||| |||||||||| | ATGTAGATGT AGTCATAATG GATACAGCTG GAAGACTTCA G......... .......... 473 TGAATTCCAC TATAACTTTT TCTAGTAGTT GTATTTAAAC CTTTCTCTTA GTTCTTGTAG 27860 .......... .......... .......... .......... .......... .......... 473 ATAGATAAAA CTATGATGGA TGAATTAAAA GACGTGAAAC GGGTACTGAA CCCCACAGAG 27800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGATAAAA CTATGATGGA TGAATTAAAA GACGTGAAAC GGGTACTGAA CCCCACAGAG 533 GTTTTACTTG TTGTGGATGC AATGACTGGC CAAGAAGCTG CAGGTACTTC TACACTCATA 27740 |||||||||| |||||||||| |||||||||| |||||||||| ||| GTTTTACTTG TTGTGGATGC AATGACTGGC CAAGAAGCTG CAG....... .......... 576 AAACATGCAA ATGATCTATT ACATGCCACA GACAGTTCGC TTCTTGTGAA ATATGGCTTT 27680 .......... .......... .......... .......... .......... .......... 576 TGACTAGCAT GGTCATATCA CTTTTCACAT GCTTTGATCT ACAGCAAGGT CGCACTAATA 27620 .......... .......... .......... .......... .......... .......... 576 TTTATGCTCT GTGGTTGATC GTTGAGGAAC ATCTTTTTTT TCTTAACCAT GGACATTCAC 27560 .......... .......... .......... .......... .......... .......... 576 ATATTGCCAA AGAAGTGTAT CTTGCCATGC ATACTTTTGA CTTACCACAC TTGCATTTTC 27500 .......... .......... .......... .......... .......... .......... 576 ATGTTCCAAG AACTAACCGT CTGATACGAA AAACTTTCCT TAACAATCCA GGCCATTCTG 27440 .......... .......... .......... .......... .......... .......... 576 TTATCTGAGG TCTGCTTCTC ACAGAGAGAG CAAAATATCT GTTGTTTGTG TAATGTTGCC 27380 .......... .......... .......... .......... .......... .......... 576 ACCGAGCGTT TTTCTCAAGA GAACGTTATA TTGCTTCTCA TCGAAGCTTG GAGACTTATA 27320 .......... .......... .......... .......... .......... .......... 576 GCACAGCTGT ATATGACAGT TAATTTCTTT CTTGTGCTTG TCTTGTACGA ATATAAGTTA 27260 .......... .......... .......... .......... .......... .......... 576 TTTTTGGGAC TTCATTACAT AAATATGGAT GTTATCTTTG ATAATCTGAA GCTGTTTAAC 27200 .......... .......... .......... .......... .......... .......... 576 TATTTTAATA CTCCCTCTAT TCACGCGACA TGCTTGGTTG ATATGGAGTT TAAGGAATTA 27140 .......... .......... .......... .......... .......... .......... 576 GTTTCATTTA CTTGAAACTT TTTTAGTCAG AAAAAAATAA ACGGAATTGG TTTTTTGAGG 27080 .......... .......... .......... .......... .......... .......... 576 TTAATGGAGA GAGGCATTCC ATATCTGAGT TGTTAAATGA ATCTGAACTC TTGAAATTTG 27020 .......... .......... .......... .......... .......... .......... 576 TTACTAGATA GTGCATTAAA ATTCTGTAAC ATCTCAAAAC AGAAATCATA GTACTGCACT 26960 .......... .......... .......... .......... .......... .......... 576 TTCATTGAGT TATTACTGAC ACAAGGACAT AATTTCTGCC CTATACCAAT CATTTCATGT 26900 .......... .......... .......... .......... .......... .......... 576 TGAAAACAGA AAATTCCGAT TTGTTTTCTC TCTTATCGTT CACATTGATG AAATTGTAGC 26840 | .......... .......... .......... .......... .......... .........C 577 TTTGGTCACA ACATTCAATC TCGAAATTGG AATTACTGGT GCCATCTTGA CGAAGCTAGA 26780 |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| |||||||||| TTTGGTCACA ACATTCAATC TCGAAATTTG GATTACTGGT GCCATCTTGA CGAAGCTAGA 637 TGGAGATTCT AGGGGTGGAG CAGCTTT 26753 |||||||||| |||||||||| ||||||| TGGAGATTCT AGGGGTGGAG CAGCTTT 664 hqPGS_C09HBa0168F14.1-1-_SGN-E332839+ (28999 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26753) ******************************************************************************** EST sequence 27 +strand 582 n (File: SGN-E250623+) 1 TTGATTCGAG GTGTAAAACC AGATCAGCAA CTAGTTAAGA CTGTACGTGA CGAGCTTGTG 61 AAACTGATGG GTGGAGAGGT TTCTGAACTG GTTTTTGCTA AATCTAAGCC CACCGTAATA 121 CTATTGGCCG GTCTACAAGG TGTTGGGAAG ACAACTGTTA GTGCAAAGTT AGCTTTATAT 181 CTAAAGAAGC AGGGTAAGAG TTGCATGCTG ATTGCTGGAG ACGTGTACAG ACCTGCTGCT 241 ATTGACCAAC TTGTTATTTT GGGTAAACAG GTTGATGTAC CTGTTTATGC AGCAGGAACA 301 GATGTAAAAC CTGCAGAAAT AGCCCGACAA GGATTACAAG AGGCCAAAAA GAAGAATGTA 361 GATGTAGTCA TAATGGATAC AGCTGGAAGA CTTCAGATAG ATAAAACTAT GATGGATGAA 421 TTAAAAGACG TGAAACGGGT ACTGAACCCC ACAGAGGTTT TACTTGTTGT GGATGCAATG 481 ACTGGCCAAG AAGCTGCAGC TTTGGTCACA ACATTCAATC TCGAAATTGG AATTACTGGT 541 GCCATCTTGA CGAAGCTAGA TGGAGATTCT AGGGGTGGAG CA Predicted gene structure (within gDNA segment 29449 to 26148): Exon 1 28849 28811 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000 Intron 1 28810 28669 ( 142 n); Pd: 0.999 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 28668 28516 ( 153 n); cDNA 40 192 ( 153 n); score: 1.000 Intron 2 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 28314 28237 ( 78 n); cDNA 193 270 ( 78 n); score: 1.000 Intron 3 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 4 28064 27939 ( 126 n); cDNA 271 396 ( 126 n); score: 1.000 Intron 4 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 5 27859 27757 ( 103 n); cDNA 397 499 ( 103 n); score: 1.000 Intron 5 27756 26841 ( 916 n); Pd: 0.872 (s: 1.00), Pa: 0.891 (s: 1.00) Exon 6 26840 26758 ( 83 n); cDNA 500 582 ( 83 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E250623+ 1.000 582 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E250623+ (28849 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26758) Alignment (genomic DNA sequence = upper lines): TTGATTCGAG GTGTAAAACC AGATCAGCAA CTAGTTAAGG TATGTATTTT TGAACTGATG 28790 |||||||||| |||||||||| |||||||||| ||||||||| TTGATTCGAG GTGTAAAACC AGATCAGCAA CTAGTTAAG. .......... .......... 39 ACTCTGAACA ATACACATTT GTACATTGAT AACAGACGGT CACCCTTCTG TTGTTAATTG 28730 .......... .......... .......... .......... .......... .......... 39 CTTGCACAAT TTGCTATCAG CTCGATCTGA ACATTTTCTT TGTCTCATTT GGTTGGTGTA 28670 .......... .......... .......... .......... .......... .......... 39 GACTGTACGT GACGAGCTTG TGAAACTGAT GGGTGGAGAG GTTTCTGAAC TGGTTTTTGC 28610 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ACTGTACGT GACGAGCTTG TGAAACTGAT GGGTGGAGAG GTTTCTGAAC TGGTTTTTGC 98 TAAATCTAAG CCCACCGTAA TACTATTGGC CGGTCTACAA GGTGTTGGGA AGACAACTGT 28550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATCTAAG CCCACCGTAA TACTATTGGC CGGTCTACAA GGTGTTGGGA AGACAACTGT 158 TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA GCAGGTGGAC TTCCAAACTT CACCTTCTCC 28490 |||||||||| |||||||||| |||||||||| |||| TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA GCAG...... .......... .......... 192 CTTTCCTGAC CTTCCTTTAC TTTCTCTCAC TCCCCTCTCT CTTGCTCATT CTATTGCAAT 28430 .......... .......... .......... .......... .......... .......... 192 TTACATATAT GGTCGTAGAA CCTGCATTTC TCCAAGTGCC TTCTAATATT AGCATTTTCC 28370 .......... .......... .......... .......... .......... .......... 192 CTTTTTCTCA TTCTATTGTC AAACCATTTA TGGGCACTGG TGGCATGGTC TGCAGGGTAA 28310 ||||| .......... .......... .......... .......... .......... .....GGTAA 197 GAGTTGCATG CTGATTGCTG GAGACGTGTA CAGACCTGCT GCTATTGACC AACTTGTTAT 28250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTGCATG CTGATTGCTG GAGACGTGTA CAGACCTGCT GCTATTGACC AACTTGTTAT 257 TTTGGGTAAA CAGGTGTGCC ATGTCACATT AGCAACAATA AGATTATATA TCATTTTATT 28190 |||||||||| ||| TTTGGGTAAA CAG....... .......... .......... .......... .......... 270 TTAGATGCTT CTTTCTGTTC TTCTACACCT TAACAATCTT TATCTATATA TCTTCTTTAC 28130 .......... .......... .......... .......... .......... .......... 270 GAGTACACAG AATATCTAAA CACAACTTCA TCCATTCTCA TGTTCACTGA TAAGTGGGGG 28070 .......... .......... .......... .......... .......... .......... 270 AACAGGTTGA TGTACCTGTT TATGCAGCAG GAACAGATGT AAAACCTGCA GAAATAGCCC 28010 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTTGA TGTACCTGTT TATGCAGCAG GAACAGATGT AAAACCTGCA GAAATAGCCC 325 GACAAGGATT ACAAGAGGCC AAAAAGAAGA ATGTAGATGT AGTCATAATG GATACAGCTG 27950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGGATT ACAAGAGGCC AAAAAGAAGA ATGTAGATGT AGTCATAATG GATACAGCTG 385 GAAGACTTCA GGTCATATCA TCTTAGTTTT TGAATTCCAC TATAACTTTT TCTAGTAGTT 27890 |||||||||| | GAAGACTTCA G......... .......... .......... .......... .......... 396 GTATTTAAAC CTTTCTCTTA GTTCTTGTAG ATAGATAAAA CTATGATGGA TGAATTAAAA 27830 |||||||||| |||||||||| |||||||||| .......... .......... .......... ATAGATAAAA CTATGATGGA TGAATTAAAA 426 GACGTGAAAC GGGTACTGAA CCCCACAGAG GTTTTACTTG TTGTGGATGC AATGACTGGC 27770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGTGAAAC GGGTACTGAA CCCCACAGAG GTTTTACTTG TTGTGGATGC AATGACTGGC 486 CAAGAAGCTG CAGGTACTTC TACACTCATA AAACATGCAA ATGATCTATT ACATGCCACA 27710 |||||||||| ||| CAAGAAGCTG CAG....... .......... .......... .......... .......... 499 GACAGTTCGC TTCTTGTGAA ATATGGCTTT TGACTAGCAT GGTCATATCA CTTTTCACAT 27650 .......... .......... .......... .......... .......... .......... 499 GCTTTGATCT ACAGCAAGGT CGCACTAATA TTTATGCTCT GTGGTTGATC GTTGAGGAAC 27590 .......... .......... .......... .......... .......... .......... 499 ATCTTTTTTT TCTTAACCAT GGACATTCAC ATATTGCCAA AGAAGTGTAT CTTGCCATGC 27530 .......... .......... .......... .......... .......... .......... 499 ATACTTTTGA CTTACCACAC TTGCATTTTC ATGTTCCAAG AACTAACCGT CTGATACGAA 27470 .......... .......... .......... .......... .......... .......... 499 AAACTTTCCT TAACAATCCA GGCCATTCTG TTATCTGAGG TCTGCTTCTC ACAGAGAGAG 27410 .......... .......... .......... .......... .......... .......... 499 CAAAATATCT GTTGTTTGTG TAATGTTGCC ACCGAGCGTT TTTCTCAAGA GAACGTTATA 27350 .......... .......... .......... .......... .......... .......... 499 TTGCTTCTCA TCGAAGCTTG GAGACTTATA GCACAGCTGT ATATGACAGT TAATTTCTTT 27290 .......... .......... .......... .......... .......... .......... 499 CTTGTGCTTG TCTTGTACGA ATATAAGTTA TTTTTGGGAC TTCATTACAT AAATATGGAT 27230 .......... .......... .......... .......... .......... .......... 499 GTTATCTTTG ATAATCTGAA GCTGTTTAAC TATTTTAATA CTCCCTCTAT TCACGCGACA 27170 .......... .......... .......... .......... .......... .......... 499 TGCTTGGTTG ATATGGAGTT TAAGGAATTA GTTTCATTTA CTTGAAACTT TTTTAGTCAG 27110 .......... .......... .......... .......... .......... .......... 499 AAAAAAATAA ACGGAATTGG TTTTTTGAGG TTAATGGAGA GAGGCATTCC ATATCTGAGT 27050 .......... .......... .......... .......... .......... .......... 499 TGTTAAATGA ATCTGAACTC TTGAAATTTG TTACTAGATA GTGCATTAAA ATTCTGTAAC 26990 .......... .......... .......... .......... .......... .......... 499 ATCTCAAAAC AGAAATCATA GTACTGCACT TTCATTGAGT TATTACTGAC ACAAGGACAT 26930 .......... .......... .......... .......... .......... .......... 499 AATTTCTGCC CTATACCAAT CATTTCATGT TGAAAACAGA AAATTCCGAT TTGTTTTCTC 26870 .......... .......... .......... .......... .......... .......... 499 TCTTATCGTT CACATTGATG AAATTGTAGC TTTGGTCACA ACATTCAATC TCGAAATTGG 26810 | |||||||||| |||||||||| |||||||||| .......... .......... .........C TTTGGTCACA ACATTCAATC TCGAAATTGG 530 AATTACTGGT GCCATCTTGA CGAAGCTAGA TGGAGATTCT AGGGGTGGAG CA 26758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AATTACTGGT GCCATCTTGA CGAAGCTAGA TGGAGATTCT AGGGGTGGAG CA 582 hqPGS_C09HBa0168F14.1-1-_SGN-E250623+ (28849 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26758) ******************************************************************************** EST sequence 48 +strand 349 n (File: SGN-E266766+) 1 AGTTGCATGC TGATTGCTGG AGACGTGTAC AGACCTGCTG CTATTGACCA ACTTGTTATT 61 TTGGGTAAAC AGGTTGATGT ACCTGTTTAT GCAGCAGGAA CAGATGTAAA ACCTGCAGAA 121 ATAGCCCGAC AAGGATTACA AGAGGCCAAA AAGAAGAATG TAGATGTAGT CATAATGGAT 181 ACAGCTGGAA GACTTCAGAT AGATAAAACT ATGATGGATG AATTAAAAGA CGTGAAACGG 241 GTACTGAACC CCACAGAGGT TTTACTTGTT GTGGATGCAA TGACTGGCCA AAAAGCTGCA 301 GCTTTGGTCA CAACATTCAA TCTCGAAATT GGAATTACTG GTGCCATCT Predicted gene structure (within gDNA segment 28908 to 26183): Exon 1 28308 28237 ( 72 n); cDNA 1 72 ( 72 n); score: 1.000 Intron 1 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 2 28064 27939 ( 126 n); cDNA 73 198 ( 126 n); score: 1.000 Intron 2 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 27859 27757 ( 103 n); cDNA 199 301 ( 103 n); score: 0.990 Intron 3 27756 26841 ( 916 n); Pd: 0.872 (s: 0.98), Pa: 0.891 (s: 1.00) Exon 4 26840 26793 ( 48 n); cDNA 302 349 ( 48 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E266766+ 0.997 349 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E266766+ (28308 28237,28064 27939,27859 27757,26840 26793) Alignment (genomic DNA sequence = upper lines): AGTTGCATGC TGATTGCTGG AGACGTGTAC AGACCTGCTG CTATTGACCA ACTTGTTATT 28249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGCATGC TGATTGCTGG AGACGTGTAC AGACCTGCTG CTATTGACCA ACTTGTTATT 60 TTGGGTAAAC AGGTGTGCCA TGTCACATTA GCAACAATAA GATTATATAT CATTTTATTT 28189 |||||||||| || TTGGGTAAAC AG........ .......... .......... .......... .......... 72 TAGATGCTTC TTTCTGTTCT TCTACACCTT AACAATCTTT ATCTATATAT CTTCTTTACG 28129 .......... .......... .......... .......... .......... .......... 72 AGTACACAGA ATATCTAAAC ACAACTTCAT CCATTCTCAT GTTCACTGAT AAGTGGGGGA 28069 .......... .......... .......... .......... .......... .......... 72 ACAGGTTGAT GTACCTGTTT ATGCAGCAGG AACAGATGTA AAACCTGCAG AAATAGCCCG 28009 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTTGAT GTACCTGTTT ATGCAGCAGG AACAGATGTA AAACCTGCAG AAATAGCCCG 128 ACAAGGATTA CAAGAGGCCA AAAAGAAGAA TGTAGATGTA GTCATAATGG ATACAGCTGG 27949 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGGATTA CAAGAGGCCA AAAAGAAGAA TGTAGATGTA GTCATAATGG ATACAGCTGG 188 AAGACTTCAG GTCATATCAT CTTAGTTTTT GAATTCCACT ATAACTTTTT CTAGTAGTTG 27889 |||||||||| AAGACTTCAG .......... .......... .......... .......... .......... 198 TATTTAAACC TTTCTCTTAG TTCTTGTAGA TAGATAAAAC TATGATGGAT GAATTAAAAG 27829 | |||||||||| |||||||||| |||||||||| .......... .......... .........A TAGATAAAAC TATGATGGAT GAATTAAAAG 229 ACGTGAAACG GGTACTGAAC CCCACAGAGG TTTTACTTGT TGTGGATGCA ATGACTGGCC 27769 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTGAAACG GGTACTGAAC CCCACAGAGG TTTTACTTGT TGTGGATGCA ATGACTGGCC 289 AAGAAGCTGC AGGTACTTCT ACACTCATAA AACATGCAAA TGATCTATTA CATGCCACAG 27709 || ||||||| || AAAAAGCTGC AG........ .......... .......... .......... .......... 301 ACAGTTCGCT TCTTGTGAAA TATGGCTTTT GACTAGCATG GTCATATCAC TTTTCACATG 27649 .......... .......... .......... .......... .......... .......... 301 CTTTGATCTA CAGCAAGGTC GCACTAATAT TTATGCTCTG TGGTTGATCG TTGAGGAACA 27589 .......... .......... .......... .......... .......... .......... 301 TCTTTTTTTT CTTAACCATG GACATTCACA TATTGCCAAA GAAGTGTATC TTGCCATGCA 27529 .......... .......... .......... .......... .......... .......... 301 TACTTTTGAC TTACCACACT TGCATTTTCA TGTTCCAAGA ACTAACCGTC TGATACGAAA 27469 .......... .......... .......... .......... .......... .......... 301 AACTTTCCTT AACAATCCAG GCCATTCTGT TATCTGAGGT CTGCTTCTCA CAGAGAGAGC 27409 .......... .......... .......... .......... .......... .......... 301 AAAATATCTG TTGTTTGTGT AATGTTGCCA CCGAGCGTTT TTCTCAAGAG AACGTTATAT 27349 .......... .......... .......... .......... .......... .......... 301 TGCTTCTCAT CGAAGCTTGG AGACTTATAG CACAGCTGTA TATGACAGTT AATTTCTTTC 27289 .......... .......... .......... .......... .......... .......... 301 TTGTGCTTGT CTTGTACGAA TATAAGTTAT TTTTGGGACT TCATTACATA AATATGGATG 27229 .......... .......... .......... .......... .......... .......... 301 TTATCTTTGA TAATCTGAAG CTGTTTAACT ATTTTAATAC TCCCTCTATT CACGCGACAT 27169 .......... .......... .......... .......... .......... .......... 301 GCTTGGTTGA TATGGAGTTT AAGGAATTAG TTTCATTTAC TTGAAACTTT TTTAGTCAGA 27109 .......... .......... .......... .......... .......... .......... 301 AAAAAATAAA CGGAATTGGT TTTTTGAGGT TAATGGAGAG AGGCATTCCA TATCTGAGTT 27049 .......... .......... .......... .......... .......... .......... 301 GTTAAATGAA TCTGAACTCT TGAAATTTGT TACTAGATAG TGCATTAAAA TTCTGTAACA 26989 .......... .......... .......... .......... .......... .......... 301 TCTCAAAACA GAAATCATAG TACTGCACTT TCATTGAGTT ATTACTGACA CAAGGACATA 26929 .......... .......... .......... .......... .......... .......... 301 ATTTCTGCCC TATACCAATC ATTTCATGTT GAAAACAGAA AATTCCGATT TGTTTTCTCT 26869 .......... .......... .......... .......... .......... .......... 301 CTTATCGTTC ACATTGATGA AATTGTAGCT TTGGTCACAA CATTCAATCT CGAAATTGGA 26809 || |||||||||| |||||||||| |||||||||| .......... .......... ........CT TTGGTCACAA CATTCAATCT CGAAATTGGA 333 ATTACTGGTG CCATCT 26793 |||||||||| |||||| ATTACTGGTG CCATCT 349 hqPGS_C09HBa0168F14.1-1-_SGN-E266766+ (28308 28237,28064 27939,27859 27757,26840 26793) ******************************************************************************** EST sequence 38 +strand 405 n (File: SGN-E207182+) 1 TGGGAAGACA ACTGTTAGTG CAAAGTTAGC TTTATATCTA AAGAAGCAGG GTAAGAGTTG 61 CATGCTGATT GCTGGAGACG TGTACAGACC TGCTGCTATT GACCAACTTG TTATTTTGGG 121 TAAACAGTGG GGGAACAGGT TGATGTACCT GTTTATGCAG CAGGAACAGA TGTAAAACCT 181 GCAGAAATAG CCCGACAAGG ATTACAAGAG GCCAAAAAGA AGAATGTAGA TGTAGTCATA 241 ATGGATACAG CTGGAAGACT TCAGATAGAT AAAACTATGA TGGATGAATT AAAAGACGTG 301 AAACGGGTAC TGAACCCCAC AGAGGTTTTA CTTGTTGTGG ATGCAATGAC TGGCCAAGAA 361 GCTGCAGCTT TGGTCACAAC ATTCAATCTC GAAATTGGAA TTACT Predicted gene structure (within gDNA segment 29164 to 26193): Exon 1 28564 28516 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 28314 28237 ( 78 n); cDNA 50 127 ( 78 n); score: 1.000 Intron 2 28236 28076 ( 161 n); Pd: 0.970 (s: 1.00), Pa: 0.516 (s: 1.00) Exon 3 28075 27939 ( 137 n); cDNA 128 264 ( 137 n); score: 1.000 Intron 3 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 27859 27757 ( 103 n); cDNA 265 367 ( 103 n); score: 1.000 Intron 4 27756 26841 ( 916 n); Pd: 0.872 (s: 1.00), Pa: 0.891 (s: 0) Exon 5 26840 26803 ( 38 n); cDNA 368 405 ( 38 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E207182+ 1.000 405 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E207182+ (28564 28516,28314 28237,28075 27939,27859 27757,26840 26803) Alignment (genomic DNA sequence = upper lines): TGGGAAGACA ACTGTTAGTG CAAAGTTAGC TTTATATCTA AAGAAGCAGG TGGACTTCCA 28505 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGGGAAGACA ACTGTTAGTG CAAAGTTAGC TTTATATCTA AAGAAGCAG. .......... 49 AACTTCACCT TCTCCCTTTC CTGACCTTCC TTTACTTTCT CTCACTCCCC TCTCTCTTGC 28445 .......... .......... .......... .......... .......... .......... 49 TCATTCTATT GCAATTTACA TATATGGTCG TAGAACCTGC ATTTCTCCAA GTGCCTTCTA 28385 .......... .......... .......... .......... .......... .......... 49 ATATTAGCAT TTTCCCTTTT TCTCATTCTA TTGTCAAACC ATTTATGGGC ACTGGTGGCA 28325 .......... .......... .......... .......... .......... .......... 49 TGGTCTGCAG GGTAAGAGTT GCATGCTGAT TGCTGGAGAC GTGTACAGAC CTGCTGCTAT 28265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GGTAAGAGTT GCATGCTGAT TGCTGGAGAC GTGTACAGAC CTGCTGCTAT 99 TGACCAACTT GTTATTTTGG GTAAACAGGT GTGCCATGTC ACATTAGCAA CAATAAGATT 28205 |||||||||| |||||||||| |||||||| TGACCAACTT GTTATTTTGG GTAAACAG.. .......... .......... .......... 127 ATATATCATT TTATTTTAGA TGCTTCTTTC TGTTCTTCTA CACCTTAACA ATCTTTATCT 28145 .......... .......... .......... .......... .......... .......... 127 ATATATCTTC TTTACGAGTA CACAGAATAT CTAAACACAA CTTCATCCAT TCTCATGTTC 28085 .......... .......... .......... .......... .......... .......... 127 ACTGATAAGT GGGGGAACAG GTTGATGTAC CTGTTTATGC AGCAGGAACA GATGTAAAAC 28025 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........T GGGGGAACAG GTTGATGTAC CTGTTTATGC AGCAGGAACA GATGTAAAAC 178 CTGCAGAAAT AGCCCGACAA GGATTACAAG AGGCCAAAAA GAAGAATGTA GATGTAGTCA 27965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAGAAAT AGCCCGACAA GGATTACAAG AGGCCAAAAA GAAGAATGTA GATGTAGTCA 238 TAATGGATAC AGCTGGAAGA CTTCAGGTCA TATCATCTTA GTTTTTGAAT TCCACTATAA 27905 |||||||||| |||||||||| |||||| TAATGGATAC AGCTGGAAGA CTTCAG.... .......... .......... .......... 264 CTTTTTCTAG TAGTTGTATT TAAACCTTTC TCTTAGTTCT TGTAGATAGA TAAAACTATG 27845 ||||| |||||||||| .......... .......... .......... .......... .....ATAGA TAAAACTATG 279 ATGGATGAAT TAAAAGACGT GAAACGGGTA CTGAACCCCA CAGAGGTTTT ACTTGTTGTG 27785 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATGAAT TAAAAGACGT GAAACGGGTA CTGAACCCCA CAGAGGTTTT ACTTGTTGTG 339 GATGCAATGA CTGGCCAAGA AGCTGCAGGT ACTTCTACAC TCATAAAACA TGCAAATGAT 27725 |||||||||| |||||||||| |||||||| GATGCAATGA CTGGCCAAGA AGCTGCAG.. .......... .......... .......... 367 CTATTACATG CCACAGACAG TTCGCTTCTT GTGAAATATG GCTTTTGACT AGCATGGTCA 27665 .......... .......... .......... .......... .......... .......... 367 TATCACTTTT CACATGCTTT GATCTACAGC AAGGTCGCAC TAATATTTAT GCTCTGTGGT 27605 .......... .......... .......... .......... .......... .......... 367 TGATCGTTGA GGAACATCTT TTTTTTCTTA ACCATGGACA TTCACATATT GCCAAAGAAG 27545 .......... .......... .......... .......... .......... .......... 367 TGTATCTTGC CATGCATACT TTTGACTTAC CACACTTGCA TTTTCATGTT CCAAGAACTA 27485 .......... .......... .......... .......... .......... .......... 367 ACCGTCTGAT ACGAAAAACT TTCCTTAACA ATCCAGGCCA TTCTGTTATC TGAGGTCTGC 27425 .......... .......... .......... .......... .......... .......... 367 TTCTCACAGA GAGAGCAAAA TATCTGTTGT TTGTGTAATG TTGCCACCGA GCGTTTTTCT 27365 .......... .......... .......... .......... .......... .......... 367 CAAGAGAACG TTATATTGCT TCTCATCGAA GCTTGGAGAC TTATAGCACA GCTGTATATG 27305 .......... .......... .......... .......... .......... .......... 367 ACAGTTAATT TCTTTCTTGT GCTTGTCTTG TACGAATATA AGTTATTTTT GGGACTTCAT 27245 .......... .......... .......... .......... .......... .......... 367 TACATAAATA TGGATGTTAT CTTTGATAAT CTGAAGCTGT TTAACTATTT TAATACTCCC 27185 .......... .......... .......... .......... .......... .......... 367 TCTATTCACG CGACATGCTT GGTTGATATG GAGTTTAAGG AATTAGTTTC ATTTACTTGA 27125 .......... .......... .......... .......... .......... .......... 367 AACTTTTTTA GTCAGAAAAA AATAAACGGA ATTGGTTTTT TGAGGTTAAT GGAGAGAGGC 27065 .......... .......... .......... .......... .......... .......... 367 ATTCCATATC TGAGTTGTTA AATGAATCTG AACTCTTGAA ATTTGTTACT AGATAGTGCA 27005 .......... .......... .......... .......... .......... .......... 367 TTAAAATTCT GTAACATCTC AAAACAGAAA TCATAGTACT GCACTTTCAT TGAGTTATTA 26945 .......... .......... .......... .......... .......... .......... 367 CTGACACAAG GACATAATTT CTGCCCTATA CCAATCATTT CATGTTGAAA ACAGAAAATT 26885 .......... .......... .......... .......... .......... .......... 367 CCGATTTGTT TTCTCTCTTA TCGTTCACAT TGATGAAATT GTAGCTTTGG TCACAACATT 26825 |||||| |||||||||| .......... .......... .......... .......... ....CTTTGG TCACAACATT 383 CAATCTCGAA ATTGGAATTA CT 26803 |||||||||| |||||||||| || CAATCTCGAA ATTGGAATTA CT 405 hqPGS_C09HBa0168F14.1-1-_SGN-E207182+ (28564 28516,28314 28237,28075 27939,27859 27757,26840 26803) ******************************************************************************** EST sequence 24 +strand 930 n (File: SGN-E553686+) 1 GTTTGTTCTT TAATCCTACC ATGGAAGCCA CTGCTTCTTT CACTTCAACT ATGGCTTCTC 61 ACCATTTCTT TCCACTTTCT AAAGCCACCC TTTCATCTTC TAAACTTAAT CCCACTTGTA 121 ATTCTTCTTC TTCTTGGATT GGTTCTACTC ATTCTCTTTC ATTTTCTTCA AGAAATTCAT 181 TTACTAGGGA TACATGGAGG GTGATCAATT CCAAGAATGT GGTAAGAAGG GAAATGAGTG 241 GAGTTATTAG AGCTGAGATG TTTGGGCAGC TCACTAGCGG ATTGGAAAAT GCTTGGAACA 301 AGCTCAAAGG AGAAGAGGTT TTGACCAAGG AAAACATCGT GGAACCTATG AGGGACATCA 361 GGAGGGCTCT TTTAGAAGCT GATGTTAGTC TCCCAGTTGT CAGAAGGTTT GTTCAGTCTG 421 TTAGTGAAGA AGCCGTTGGC ACTGGTTTGA TTCGAGGTGT AAAACCAGAT CAGCAACTAG 481 TTAAGACTGT ACGTGACGAG CTTGTGAAAC TGATGGGTGG AGAGGTTTCT GAACTGGTTT 541 TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCGGTCT ACAAGGTGTT GGGAAGACAA 601 CTGTTAGTGC AAAGTTAGCT TTATATCTAA AGAAGCAGGG TAAGAGTTGC ATGCTGATTG 661 CTGGAGACGT GTACAGACCT GCTGCTATTG ACCAACTTGT TATTTTGGGT AAACAGGTTG 721 ATGTACCTGT TTATGCAGCA GGAACAGATG TAAAACCTGC AGAAATAGCC CGACAAGGAT 781 TACAAGAGGC CAAAAAGAAG AATGTAGATG TAGTCATAAT GGATACAGCT GGAAGACTTC 841 AGATAGATAA AACTATGATG GATGAATTAA AAGACGTGAA AACGGTACTG AACCCCACAG 901 AGGTTTTACT TGTTGTGGAT GCAATGACTG Predicted gene structure (within gDNA segment 31660 to 27162): Exon 1 31060 30876 ( 185 n); cDNA 1 185 ( 185 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 186 315 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 316 383 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 384 485 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 28668 28516 ( 153 n); cDNA 486 638 ( 153 n); score: 1.000 Intron 5 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 28314 28237 ( 78 n); cDNA 639 716 ( 78 n); score: 1.000 Intron 6 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 7 28064 27939 ( 126 n); cDNA 717 842 ( 126 n); score: 1.000 Intron 7 27938 27860 ( 79 n); Pd: 0.994 (s: 1.00), Pa: 0.975 (s: 0.96) Exon 8 27859 27772 ( 88 n); cDNA 843 930 ( 88 n); score: 0.977 MATCH C09HBa0168F14.1-1- SGN-E553686+ 0.998 930 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E553686+ (31060 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27772) Alignment (genomic DNA sequence = upper lines): GTTTGTTCTT TAATCCTACC ATGGAAGCCA CTGCTTCTTT CACTTCAACT ATGGCTTCTC 31001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTTCTT TAATCCTACC ATGGAAGCCA CTGCTTCTTT CACTTCAACT ATGGCTTCTC 60 ACCATTTCTT TCCACTTTCT AAAGCCACCC TTTCATCTTC TAAACTTAAT CCCACTTGTA 30941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCATTTCTT TCCACTTTCT AAAGCCACCC TTTCATCTTC TAAACTTAAT CCCACTTGTA 120 ATTCTTCTTC TTCTTGGATT GGTTCTACTC ATTCTCTTTC ATTTTCTTCA AGAAATTCAT 30881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTTCTTC TTCTTGGATT GGTTCTACTC ATTCTCTTTC ATTTTCTTCA AGAAATTCAT 180 TTACTGTAAG ACCCTTTTGG ATTTTGGTTA GTTTTTTTTT TTTTTTGTAG TTTTTGGTTA 30821 ||||| TTACT..... .......... .......... .......... .......... .......... 185 AAGATTGAAT TTTTATGTAG AGGGATACAT GGAGGGTGAT CAATTCCAAG AATGTGGTAA 30761 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGGGATACAT GGAGGGTGAT CAATTCCAAG AATGTGGTAA 225 GAAGGGAAAT GAGTGGAGTT ATTAGAGCTG AGATGTTTGG GCAGCTCACT AGCGGATTGG 30701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGAAAT GAGTGGAGTT ATTAGAGCTG AGATGTTTGG GCAGCTCACT AGCGGATTGG 285 AAAATGCTTG GAACAAGCTC AAAGGAGAAG GTAAAAGCAA AAAAAATACT CTTTTTTAAA 30641 |||||||||| |||||||||| |||||||||| AAAATGCTTG GAACAAGCTC AAAGGAGAAG .......... .......... .......... 315 TTTAAAAATG AGCTAGTTTT ATGTGAAAAT TTGAAGTATG GGAGCTTGAA TTGTTAATCT 30581 .......... .......... .......... .......... .......... .......... 315 TGAGTAGGTA CATGTTAGAG TGTGTTAGAG TCGCATGTTG GTTGGTTGGG AATGGACCGG 30521 .......... .......... .......... .......... .......... .......... 315 TGGTCTGTTA TGTGGACTTG GACGATCCTC TCTTCGTGAG CTAACGTTTT GAGGTTGAGT 30461 .......... .......... .......... .......... .......... .......... 315 TAGGCGTAAG TGTCATATCT TTATATGCTA TCGTAGCTAC TTAGCTAGGT TCATACCTGT 30401 .......... .......... .......... .......... .......... .......... 315 TTGGACTCCC GGTTTATGCT CTAGTTAGGC ATGAGGTGTT AAAGTGGGTT ATAGTCCCAA 30341 .......... .......... .......... .......... .......... .......... 315 ATCAGTTTAT ATGGATTGGG TAATCCTTCC GTCGTGAGCT AGTTTTTGGA GTTAGGCCCG 30281 .......... .......... .......... .......... .......... .......... 315 GGTGTCATAT CTGGACTGTT TTGAAAGGGA ACTGAAAATC GATACCTTGG ATAGGGATGA 30221 .......... .......... .......... .......... .......... .......... 315 TAGTTCAAAA ATATGACTTC AAGAACAATG TCTTCTTGTT TTTTCATATT CAGGATAATA 30161 .......... .......... .......... .......... .......... .......... 315 TCTTAAGATA ATTCATTAGT ACATCAGAGG TGTTTATTTG ATGTCATCAC AATTTCAGTT 30101 .......... .......... .......... .......... .......... .......... 315 AAAGTAAATG CCTTTGCTAA GTAAAGGCTG TGAGATAAGA TAGGAGTGAA CTAAAGCTTC 30041 .......... .......... .......... .......... .......... .......... 315 TTCAAAATGT GGCATGTAGT CATCCAAGGG TCATATCAAT CTTGGTGAAT GAGTTCAGCA 29981 .......... .......... .......... .......... .......... .......... 315 AGACTTACAA AAAAAAATAT AAAAACCTGG AATCGATCCT TAAATAGGAA TTAAGTCTCA 29921 .......... .......... .......... .......... .......... .......... 315 TTTTACAAGA TTTTAACATG CTGAAATACA AAATAAACAC AACCTGGAAT AGATCCTTAA 29861 .......... .......... .......... .......... .......... .......... 315 TTAGGAATTA CGTCTCATAT CCAAGATTTT AACATACATC AGAGCTGAAA ATGTATCAGT 29801 .......... .......... .......... .......... .......... .......... 315 GAGGAGTTCC TTTATGGATG TTGAGGCTTC GGAGATAGAG TGGGACAGGA AATCCCAGTA 29741 .......... .......... .......... .......... .......... .......... 315 TTTTATGCCC AAGCCAATTG ATTCTTGAAG TGGTAAGTAG TTGAGCTAAC CTTCTGCTAT 29681 .......... .......... .......... .......... .......... .......... 315 GAGAATGTTT TAGTGGAAAT GTGGGCTGTC AGGACGGGGT GATGTGGAGA TAGAAGCTAT 29621 .......... .......... .......... .......... .......... .......... 315 ATAAGTTGGA ACATGAAGCT TAATGTCTAG ACTTAAATCC CGCGTGTTTA GAGGATTCAA 29561 .......... .......... .......... .......... .......... .......... 315 CAACATGACT GATTTCATTT TCAGGGTGGA TGATGAGTTG TCGTAGATGG TAATATTGAT 29501 .......... .......... .......... .......... .......... .......... 315 CCATTCGAGG AGGTGCCAGA TGGGGTATAA TGAATTATAC TTCAAGAGAA GAAACCGGGA 29441 .......... .......... .......... .......... .......... .......... 315 AGATGTATAA TTGATTGTTA AACTCCAATG AAGTGTATGG AAAGGGAAGG GGCCTTGCTA 29381 .......... .......... .......... .......... .......... .......... 315 CTATAAGGTT TTAAATGCAA AGAGTACAAC ATATTAACAA CTATGGCCTA TGGGTCATTG 29321 .......... .......... .......... .......... .......... .......... 315 GATTTCTATA ACAGGGATAT ACTTCTCCTT TTTAGTTCCA TACATTATTG CTGGATATTA 29261 .......... .......... .......... .......... .......... .......... 315 TAAAGTTGTA GGAATAAATT AATTGGAGAG TATTTTACTG TTAAAAATGT GACTTGTCTG 29201 .......... .......... .......... .......... .......... .......... 315 CCTTGTCCAA ATTCAAATTT CTAATCATAT TTTCTATATC CTCAATCTTT CAAATTTTAG 29141 .......... .......... .......... .......... .......... .......... 315 AGGTTGAAGT TCTTATTGCC CTTGTTACTA AATATGTGGT TATATATAAT GATAAAGTGG 29081 .......... .......... .......... .......... .......... .......... 315 CTGTTGTTTG AATTCCTTGT GCCTCAGAGG TTTTGACCAA GGAAAACATC GTGGAACCTA 29021 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG TTTTGACCAA GGAAAACATC GTGGAACCTA 348 TGAGGGACAT CAGGAGGGCT CTTTTAGAAG CTGATGTATG TTGCTTACTG TTTCAACAAC 28961 |||||||||| |||||||||| |||||||||| ||||| TGAGGGACAT CAGGAGGGCT CTTTTAGAAG CTGAT..... .......... .......... 383 TAATCTCTAT ACATAAAATT TCGCCGCTTA TTTAACTTTA ATCGGCAGGT TAGTCTCCCA 28901 || |||||||||| .......... .......... .......... .......... ........GT TAGTCTCCCA 395 GTTGTCAGAA GGTTTGTTCA GTCTGTTAGT GAAGAAGCCG TTGGCACTGG TTTGATTCGA 28841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTCAGAA GGTTTGTTCA GTCTGTTAGT GAAGAAGCCG TTGGCACTGG TTTGATTCGA 455 GGTGTAAAAC CAGATCAGCA ACTAGTTAAG GTATGTATTT TTGAACTGAT GACTCTGAAC 28781 |||||||||| |||||||||| |||||||||| GGTGTAAAAC CAGATCAGCA ACTAGTTAAG .......... .......... .......... 485 AATACACATT TGTACATTGA TAACAGACGG TCACCCTTCT GTTGTTAATT GCTTGCACAA 28721 .......... .......... .......... .......... .......... .......... 485 TTTGCTATCA GCTCGATCTG AACATTTTCT TTGTCTCATT TGGTTGGTGT AGACTGTACG 28661 |||||||| .......... .......... .......... .......... .......... ..ACTGTACG 493 TGACGAGCTT GTGAAACTGA TGGGTGGAGA GGTTTCTGAA CTGGTTTTTG CTAAATCTAA 28601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGAGCTT GTGAAACTGA TGGGTGGAGA GGTTTCTGAA CTGGTTTTTG CTAAATCTAA 553 GCCCACCGTA ATACTATTGG CCGGTCTACA AGGTGTTGGG AAGACAACTG TTAGTGCAAA 28541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCACCGTA ATACTATTGG CCGGTCTACA AGGTGTTGGG AAGACAACTG TTAGTGCAAA 613 GTTAGCTTTA TATCTAAAGA AGCAGGTGGA CTTCCAAACT TCACCTTCTC CCTTTCCTGA 28481 |||||||||| |||||||||| ||||| GTTAGCTTTA TATCTAAAGA AGCAG..... .......... .......... .......... 638 CCTTCCTTTA CTTTCTCTCA CTCCCCTCTC TCTTGCTCAT TCTATTGCAA TTTACATATA 28421 .......... .......... .......... .......... .......... .......... 638 TGGTCGTAGA ACCTGCATTT CTCCAAGTGC CTTCTAATAT TAGCATTTTC CCTTTTTCTC 28361 .......... .......... .......... .......... .......... .......... 638 ATTCTATTGT CAAACCATTT ATGGGCACTG GTGGCATGGT CTGCAGGGTA AGAGTTGCAT 28301 |||| |||||||||| .......... .......... .......... .......... ......GGTA AGAGTTGCAT 652 GCTGATTGCT GGAGACGTGT ACAGACCTGC TGCTATTGAC CAACTTGTTA TTTTGGGTAA 28241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATTGCT GGAGACGTGT ACAGACCTGC TGCTATTGAC CAACTTGTTA TTTTGGGTAA 712 ACAGGTGTGC CATGTCACAT TAGCAACAAT AAGATTATAT ATCATTTTAT TTTAGATGCT 28181 |||| ACAG...... .......... .......... .......... .......... .......... 716 TCTTTCTGTT CTTCTACACC TTAACAATCT TTATCTATAT ATCTTCTTTA CGAGTACACA 28121 .......... .......... .......... .......... .......... .......... 716 GAATATCTAA ACACAACTTC ATCCATTCTC ATGTTCACTG ATAAGTGGGG GAACAGGTTG 28061 |||| .......... .......... .......... .......... .......... ......GTTG 720 ATGTACCTGT TTATGCAGCA GGAACAGATG TAAAACCTGC AGAAATAGCC CGACAAGGAT 28001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTACCTGT TTATGCAGCA GGAACAGATG TAAAACCTGC AGAAATAGCC CGACAAGGAT 780 TACAAGAGGC CAAAAAGAAG AATGTAGATG TAGTCATAAT GGATACAGCT GGAAGACTTC 27941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAGAGGC CAAAAAGAAG AATGTAGATG TAGTCATAAT GGATACAGCT GGAAGACTTC 840 AGGTCATATC ATCTTAGTTT TTGAATTCCA CTATAACTTT TTCTAGTAGT TGTATTTAAA 27881 || AG........ .......... .......... .......... .......... .......... 842 CCTTTCTCTT AGTTCTTGTA GATAGATAAA ACTATGATGG ATGAATTAAA AGACGTGAAA 27821 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .ATAGATAAA ACTATGATGG ATGAATTAAA AGACGTGAAA 881 CGGGTACTGA ACCCCACAGA GGTTTTACTT GTTGTGGATG CAATGACTG 27772 |||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACGGTACTGA ACCCCACAGA GGTTTTACTT GTTGTGGATG CAATGACTG 930 hqPGS_C09HBa0168F14.1-1-_SGN-E553686+ (31060 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27772) ******************************************************************************** EST sequence 32 +strand 597 n (File: SGN-E256609+) 1 TAGAGCTGAG ATGTTTGGGC AGCTCACTAG CGGATTGGAA AATGCTTGGA ACAAGCTCAA 61 AGGAGAAGAG GTTTTGACCA AAGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC 121 TCTTTTAGAA GCTGATGTTA GTCTCCCAGT TGTCAGAAGG TTTGTTCAGT CTGTTAGTGA 181 AGAAGCCGTT GGCACTGGTT TGATTCGAGG TGTAAAACCA GATCAGCAAC TAGTTAAGAC 241 TGTACGTGAC GAGCTTGTGA AACTGATGGG TGGAGAGGTT TCTGAACTGG TTTTTGCTAA 301 ATCTAAGCCC ACCGTAATAC TATTGGCCGG TCTACAAGGT GTTGGGAAGA CAACTGTTAG 361 TGCAAAGTTA GCTTTATATC TAAAGAAGCA GGGTAAGAGT TGCATGCTGA TTGCTGGAGA 421 CGTGTACAGA CCTGCTGCTA TTGACCAACT TGTTATTTTG GGTAAACAGG TTGATGTACC 481 TGTTTATGCA GCAGGAACAG ATGTAAAACC TGCAGAAATA GCCCGACAAG GATTACAAGA 541 GGCCAAAAAG AAGAATGTAG ATGTAGTCAT AATGGATACA GCTGGAAGAC TTCAGAT Predicted gene structure (within gDNA segment 31338 to 27309): Exon 1 30738 30671 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 0.98) Exon 2 29053 28986 ( 68 n); cDNA 69 136 ( 68 n); score: 0.985 Intron 2 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 3 28912 28811 ( 102 n); cDNA 137 238 ( 102 n); score: 1.000 Intron 3 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 28668 28516 ( 153 n); cDNA 239 391 ( 153 n); score: 1.000 Intron 4 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 28314 28237 ( 78 n); cDNA 392 469 ( 78 n); score: 1.000 Intron 5 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 6 28064 27939 ( 126 n); cDNA 470 595 ( 126 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E256609+ 0.998 595 0.997 C PGS_C09HBa0168F14.1-1-_SGN-E256609+ (30738 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939) Alignment (genomic DNA sequence = upper lines): TAGAGCTGAG ATGTTTGGGC AGCTCACTAG CGGATTGGAA AATGCTTGGA ACAAGCTCAA 30679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAGCTGAG ATGTTTGGGC AGCTCACTAG CGGATTGGAA AATGCTTGGA ACAAGCTCAA 60 AGGAGAAGGT AAAAGCAAAA AAAATACTCT TTTTTAAATT TAAAAATGAG CTAGTTTTAT 30619 |||||||| AGGAGAAG.. .......... .......... .......... .......... .......... 68 GTGAAAATTT GAAGTATGGG AGCTTGAATT GTTAATCTTG AGTAGGTACA TGTTAGAGTG 30559 .......... .......... .......... .......... .......... .......... 68 TGTTAGAGTC GCATGTTGGT TGGTTGGGAA TGGACCGGTG GTCTGTTATG TGGACTTGGA 30499 .......... .......... .......... .......... .......... .......... 68 CGATCCTCTC TTCGTGAGCT AACGTTTTGA GGTTGAGTTA GGCGTAAGTG TCATATCTTT 30439 .......... .......... .......... .......... .......... .......... 68 ATATGCTATC GTAGCTACTT AGCTAGGTTC ATACCTGTTT GGACTCCCGG TTTATGCTCT 30379 .......... .......... .......... .......... .......... .......... 68 AGTTAGGCAT GAGGTGTTAA AGTGGGTTAT AGTCCCAAAT CAGTTTATAT GGATTGGGTA 30319 .......... .......... .......... .......... .......... .......... 68 ATCCTTCCGT CGTGAGCTAG TTTTTGGAGT TAGGCCCGGG TGTCATATCT GGACTGTTTT 30259 .......... .......... .......... .......... .......... .......... 68 GAAAGGGAAC TGAAAATCGA TACCTTGGAT AGGGATGATA GTTCAAAAAT ATGACTTCAA 30199 .......... .......... .......... .......... .......... .......... 68 GAACAATGTC TTCTTGTTTT TTCATATTCA GGATAATATC TTAAGATAAT TCATTAGTAC 30139 .......... .......... .......... .......... .......... .......... 68 ATCAGAGGTG TTTATTTGAT GTCATCACAA TTTCAGTTAA AGTAAATGCC TTTGCTAAGT 30079 .......... .......... .......... .......... .......... .......... 68 AAAGGCTGTG AGATAAGATA GGAGTGAACT AAAGCTTCTT CAAAATGTGG CATGTAGTCA 30019 .......... .......... .......... .......... .......... .......... 68 TCCAAGGGTC ATATCAATCT TGGTGAATGA GTTCAGCAAG ACTTACAAAA AAAAATATAA 29959 .......... .......... .......... .......... .......... .......... 68 AAACCTGGAA TCGATCCTTA AATAGGAATT AAGTCTCATT TTACAAGATT TTAACATGCT 29899 .......... .......... .......... .......... .......... .......... 68 GAAATACAAA ATAAACACAA CCTGGAATAG ATCCTTAATT AGGAATTACG TCTCATATCC 29839 .......... .......... .......... .......... .......... .......... 68 AAGATTTTAA CATACATCAG AGCTGAAAAT GTATCAGTGA GGAGTTCCTT TATGGATGTT 29779 .......... .......... .......... .......... .......... .......... 68 GAGGCTTCGG AGATAGAGTG GGACAGGAAA TCCCAGTATT TTATGCCCAA GCCAATTGAT 29719 .......... .......... .......... .......... .......... .......... 68 TCTTGAAGTG GTAAGTAGTT GAGCTAACCT TCTGCTATGA GAATGTTTTA GTGGAAATGT 29659 .......... .......... .......... .......... .......... .......... 68 GGGCTGTCAG GACGGGGTGA TGTGGAGATA GAAGCTATAT AAGTTGGAAC ATGAAGCTTA 29599 .......... .......... .......... .......... .......... .......... 68 ATGTCTAGAC TTAAATCCCG CGTGTTTAGA GGATTCAACA ACATGACTGA TTTCATTTTC 29539 .......... .......... .......... .......... .......... .......... 68 AGGGTGGATG ATGAGTTGTC GTAGATGGTA ATATTGATCC ATTCGAGGAG GTGCCAGATG 29479 .......... .......... .......... .......... .......... .......... 68 GGGTATAATG AATTATACTT CAAGAGAAGA AACCGGGAAG ATGTATAATT GATTGTTAAA 29419 .......... .......... .......... .......... .......... .......... 68 CTCCAATGAA GTGTATGGAA AGGGAAGGGG CCTTGCTACT ATAAGGTTTT AAATGCAAAG 29359 .......... .......... .......... .......... .......... .......... 68 AGTACAACAT ATTAACAACT ATGGCCTATG GGTCATTGGA TTTCTATAAC AGGGATATAC 29299 .......... .......... .......... .......... .......... .......... 68 TTCTCCTTTT TAGTTCCATA CATTATTGCT GGATATTATA AAGTTGTAGG AATAAATTAA 29239 .......... .......... .......... .......... .......... .......... 68 TTGGAGAGTA TTTTACTGTT AAAAATGTGA CTTGTCTGCC TTGTCCAAAT TCAAATTTCT 29179 .......... .......... .......... .......... .......... .......... 68 AATCATATTT TCTATATCCT CAATCTTTCA AATTTTAGAG GTTGAAGTTC TTATTGCCCT 29119 .......... .......... .......... .......... .......... .......... 68 TGTTACTAAA TATGTGGTTA TATATAATGA TAAAGTGGCT GTTGTTTGAA TTCCTTGTGC 29059 .......... .......... .......... .......... .......... .......... 68 CTCAGAGGTT TTGACCAAGG AAAACATCGT GGAACCTATG AGGGACATCA GGAGGGCTCT 28999 ||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| .....AGGTT TTGACCAAAG AAAACATCGT GGAACCTATG AGGGACATCA GGAGGGCTCT 123 TTTAGAAGCT GATGTATGTT GCTTACTGTT TCAACAACTA ATCTCTATAC ATAAAATTTC 28939 |||||||||| ||| TTTAGAAGCT GAT....... .......... .......... .......... .......... 136 GCCGCTTATT TAACTTTAAT CGGCAGGTTA GTCTCCCAGT TGTCAGAAGG TTTGTTCAGT 28879 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTTA GTCTCCCAGT TGTCAGAAGG TTTGTTCAGT 170 CTGTTAGTGA AGAAGCCGTT GGCACTGGTT TGATTCGAGG TGTAAAACCA GATCAGCAAC 28819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTAGTGA AGAAGCCGTT GGCACTGGTT TGATTCGAGG TGTAAAACCA GATCAGCAAC 230 TAGTTAAGGT ATGTATTTTT GAACTGATGA CTCTGAACAA TACACATTTG TACATTGATA 28759 |||||||| TAGTTAAG.. .......... .......... .......... .......... .......... 238 ACAGACGGTC ACCCTTCTGT TGTTAATTGC TTGCACAATT TGCTATCAGC TCGATCTGAA 28699 .......... .......... .......... .......... .......... .......... 238 CATTTTCTTT GTCTCATTTG GTTGGTGTAG ACTGTACGTG ACGAGCTTGT GAAACTGATG 28639 |||||||||| |||||||||| |||||||||| .......... .......... .......... ACTGTACGTG ACGAGCTTGT GAAACTGATG 268 GGTGGAGAGG TTTCTGAACT GGTTTTTGCT AAATCTAAGC CCACCGTAAT ACTATTGGCC 28579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGAGAGG TTTCTGAACT GGTTTTTGCT AAATCTAAGC CCACCGTAAT ACTATTGGCC 328 GGTCTACAAG GTGTTGGGAA GACAACTGTT AGTGCAAAGT TAGCTTTATA TCTAAAGAAG 28519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTACAAG GTGTTGGGAA GACAACTGTT AGTGCAAAGT TAGCTTTATA TCTAAAGAAG 388 CAGGTGGACT TCCAAACTTC ACCTTCTCCC TTTCCTGACC TTCCTTTACT TTCTCTCACT 28459 ||| CAG....... .......... .......... .......... .......... .......... 391 CCCCTCTCTC TTGCTCATTC TATTGCAATT TACATATATG GTCGTAGAAC CTGCATTTCT 28399 .......... .......... .......... .......... .......... .......... 391 CCAAGTGCCT TCTAATATTA GCATTTTCCC TTTTTCTCAT TCTATTGTCA AACCATTTAT 28339 .......... .......... .......... .......... .......... .......... 391 GGGCACTGGT GGCATGGTCT GCAGGGTAAG AGTTGCATGC TGATTGCTGG AGACGTGTAC 28279 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTAAG AGTTGCATGC TGATTGCTGG AGACGTGTAC 427 AGACCTGCTG CTATTGACCA ACTTGTTATT TTGGGTAAAC AGGTGTGCCA TGTCACATTA 28219 |||||||||| |||||||||| |||||||||| |||||||||| || AGACCTGCTG CTATTGACCA ACTTGTTATT TTGGGTAAAC AG........ .......... 469 GCAACAATAA GATTATATAT CATTTTATTT TAGATGCTTC TTTCTGTTCT TCTACACCTT 28159 .......... .......... .......... .......... .......... .......... 469 AACAATCTTT ATCTATATAT CTTCTTTACG AGTACACAGA ATATCTAAAC ACAACTTCAT 28099 .......... .......... .......... .......... .......... .......... 469 CCATTCTCAT GTTCACTGAT AAGTGGGGGA ACAGGTTGAT GTACCTGTTT ATGCAGCAGG 28039 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTTGAT GTACCTGTTT ATGCAGCAGG 495 AACAGATGTA AAACCTGCAG AAATAGCCCG ACAAGGATTA CAAGAGGCCA AAAAGAAGAA 27979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGATGTA AAACCTGCAG AAATAGCCCG ACAAGGATTA CAAGAGGCCA AAAAGAAGAA 555 TGTAGATGTA GTCATAATGG ATACAGCTGG AAGACTTCAG 27939 |||||||||| |||||||||| |||||||||| |||||||||| TGTAGATGTA GTCATAATGG ATACAGCTGG AAGACTTCAG 595 hqPGS_C09HBa0168F14.1-1-_SGN-E256609+ (30738 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939) ******************************************************************************** EST sequence 28 +strand 428 n (File: SGN-E341894+) 1 TATGAGGGAC ATCAGGAGGG CTCTTTTAGA AGCTGATGTT AGTCTCCCAG TTGTCAGAAG 61 GTTTGTTCAG TCTGTTAGTG AAGAAGCCGT TGGCACTGGT TTGATTCGAG GTGTAAAACC 121 AGATCAGCAA CTAGTTAAGA CTGTACGTGA CGAGCTTGTG AAACTGATGG GTGGAGAGGT 181 TTCTGAACTG GTTTTTGCTA AATCTAAGCC CACCGTAATA CTATTGGCCG GTCTACAAGG 241 TGTTGGGAAG ACAACTGTTA GTGCAAAGTT AGCTTTATAT CTAAAGAAGC AGGGTAAGAG 301 TTGCATGCTG ATTTGGTGGA GACGTGTACA GACCCTGCTG CTATTGACCA ATCTTGTTAT 361 TTTGGGTAAA CAAGTTGATG TACCTGTTTA TGCAGCAGGA ACAGATGTAA AACCTGCAGA 421 AATAGCCC Predicted gene structure (within gDNA segment 29622 to 27400): Exon 1 29022 28986 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 28985 28913 ( 73 n); Pd: 0.976 (s: 0), Pa: 0.920 (s: 1.00) Exon 2 28912 28811 ( 102 n); cDNA 38 139 ( 102 n); score: 1.000 Intron 2 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 28668 28516 ( 153 n); cDNA 140 292 ( 153 n); score: 1.000 Intron 3 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 0.88) Exon 4 28314 28237 ( 78 n); cDNA 293 373 ( 81 n); score: 0.878 Intron 4 28236 28065 ( 172 n); Pd: 0.970 (s: 0.88), Pa: 0.977 (s: 1.00) Exon 5 28064 28010 ( 55 n); cDNA 374 428 ( 55 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E341894+ 0.976 425 0.993 C PGS_C09HBa0168F14.1-1-_SGN-E341894+ (29022 28986,28912 28811,28668 28516,28314 28237,28064 28010) Alignment (genomic DNA sequence = upper lines): TATGAGGGAC ATCAGGAGGG CTCTTTTAGA AGCTGATGTA TGTTGCTTAC TGTTTCAACA 28963 |||||||||| |||||||||| |||||||||| ||||||| TATGAGGGAC ATCAGGAGGG CTCTTTTAGA AGCTGAT... .......... .......... 37 ACTAATCTCT ATACATAAAA TTTCGCCGCT TATTTAACTT TAATCGGCAG GTTAGTCTCC 28903 |||||||||| .......... .......... .......... .......... .......... GTTAGTCTCC 47 CAGTTGTCAG AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT GGTTTGATTC 28843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGTCAG AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT GGTTTGATTC 107 GAGGTGTAAA ACCAGATCAG CAACTAGTTA AGGTATGTAT TTTTGAACTG ATGACTCTGA 28783 |||||||||| |||||||||| |||||||||| || GAGGTGTAAA ACCAGATCAG CAACTAGTTA AG........ .......... .......... 139 ACAATACACA TTTGTACATT GATAACAGAC GGTCACCCTT CTGTTGTTAA TTGCTTGCAC 28723 .......... .......... .......... .......... .......... .......... 139 AATTTGCTAT CAGCTCGATC TGAACATTTT CTTTGTCTCA TTTGGTTGGT GTAGACTGTA 28663 |||||| .......... .......... .......... .......... .......... ....ACTGTA 145 CGTGACGAGC TTGTGAAACT GATGGGTGGA GAGGTTTCTG AACTGGTTTT TGCTAAATCT 28603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGACGAGC TTGTGAAACT GATGGGTGGA GAGGTTTCTG AACTGGTTTT TGCTAAATCT 205 AAGCCCACCG TAATACTATT GGCCGGTCTA CAAGGTGTTG GGAAGACAAC TGTTAGTGCA 28543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCCACCG TAATACTATT GGCCGGTCTA CAAGGTGTTG GGAAGACAAC TGTTAGTGCA 265 AAGTTAGCTT TATATCTAAA GAAGCAGGTG GACTTCCAAA CTTCACCTTC TCCCTTTCCT 28483 |||||||||| |||||||||| ||||||| AAGTTAGCTT TATATCTAAA GAAGCAG... .......... .......... .......... 292 GACCTTCCTT TACTTTCTCT CACTCCCCTC TCTCTTGCTC ATTCTATTGC AATTTACATA 28423 .......... .......... .......... .......... .......... .......... 292 TATGGTCGTA GAACCTGCAT TTCTCCAAGT GCCTTCTAAT ATTAGCATTT TCCCTTTTTC 28363 .......... .......... .......... .......... .......... .......... 292 TCATTCTATT GTCAAACCAT TTATGGGCAC TGGTGGCATG GTCTGCAGGG TAAGAGTTGC 28303 || |||||||||| .......... .......... .......... .......... ........GG TAAGAGTTGC 304 ATGCTGA-TT GCTGGAGACG TGTACAGA-C CTGCTGCTAT TGACCAA-CT TGTTATTTTG 28246 ||||||| || | |||||||| |||||||| | |||||||||| ||||||| || |||||||||| ATGCTGATTT GGTGGAGACG TGTACAGACC CTGCTGCTAT TGACCAATCT TGTTATTTTG 364 GGTAAACAGG TGTGCCATGT CACATTAGCA ACAATAAGAT TATATATCAT TTTATTTTAG 28186 |||||||| GGTAAACAA. .......... .......... .......... .......... .......... 373 ATGCTTCTTT CTGTTCTTCT ACACCTTAAC AATCTTTATC TATATATCTT CTTTACGAGT 28126 .......... .......... .......... .......... .......... .......... 373 ACACAGAATA TCTAAACACA ACTTCATCCA TTCTCATGTT CACTGATAAG TGGGGGAACA 28066 .......... .......... .......... .......... .......... .......... 373 GGTTGATGTA CCTGTTTATG CAGCAGGAAC AGATGTAAAA CCTGCAGAAA TAGCCC 28010 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| .GTTGATGTA CCTGTTTATG CAGCAGGAAC AGATGTAAAA CCTGCAGAAA TAGCCC 428 hqPGS_C09HBa0168F14.1-1-_SGN-E341894+ (29022 28986,28912 28811,28668 28516,28314 28237,28064 28010) ******************************************************************************** EST sequence 23 +strand 741 n (File: SGN-E339009+) 1 TTGTTTGTTC TTTAATCCTA CCATGGAAGC CACTGCTTCT TTCACTTCAA CTATGGCTTC 61 TCACCATTTC TTTCCACTTT CTAAAGCCAC CCTTTCATCT TCTAAACTTA ATCCCACTTG 121 TAATTCTTCT TCTTCTTGGA TTGGTTCTAC TCATTCTCTT TCATTTTCTT CAAGAAATTC 181 ATTTACTAGG GATACATGGA GGGTGATCAA TTCCAAGAAT GTGGTAAGAA GGGAAATGAG 241 TGGAGTTATT AGAGCTGAGA TGTTTGGGCA GCTCACTAGC GGATTGGAAA ATGCTTGGAA 301 CAAGCTCAAA GGAGAAGAGG TTTTGACCAA GGAAAACATC GTGGAACCTA TGAGGGACAT 361 CAGGAGGGCT CTTTTAGAAG CTGATGTTAG TCTCCCAGTT GTCAGAAGGT TTGTTCAGTC 421 TGTTAGTGAA GAAGCCGTTG GCACTGGTTT GATTCGAGGT GTAAAACCAG ATCAGCAACT 481 AGTTAAGACT GTACGTGACG AGCTTGTGAA ACTGATGGGG GAAGAGGTTT CTGAACTGGT 541 TTTTGCTAAA TCTAAGCCCA CCGTAATACT ATTGGCCGGT CTACAAGGTG TTGGGAAGAC 601 AACTGTTAGT GCAAAGTTAG CTTTATATCT AAAGAAGCAG GGTAAGAGTT GCATGCTGAT 661 TGCTGGAGAC GTGTACAGAC CTGCTGCTAT TGACCAACTT GNTATTTTGG GTAAACAGGT 721 TGATGTACCT GTTTATGCAG C Predicted gene structure (within gDNA segment 31662 to 27415): Exon 1 31062 30876 ( 187 n); cDNA 1 187 ( 187 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 188 317 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 318 385 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 386 487 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 0.96) Exon 5 28668 28516 ( 153 n); cDNA 488 640 ( 153 n); score: 0.987 Intron 5 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 28314 28237 ( 78 n); cDNA 641 718 ( 78 n); score: 0.987 Intron 6 28236 28065 ( 172 n); Pd: 0.970 (s: 0.98), Pa: 0.977 (s: 0) Exon 7 28064 28042 ( 23 n); cDNA 719 741 ( 23 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E339009+ 0.996 741 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E339009+ (31062 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 28042) Alignment (genomic DNA sequence = upper lines): TTGTTTGTTC TTTAATCCTA CCATGGAAGC CACTGCTTCT TTCACTTCAA CTATGGCTTC 31003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTGTTC TTTAATCCTA CCATGGAAGC CACTGCTTCT TTCACTTCAA CTATGGCTTC 60 TCACCATTTC TTTCCACTTT CTAAAGCCAC CCTTTCATCT TCTAAACTTA ATCCCACTTG 30943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCATTTC TTTCCACTTT CTAAAGCCAC CCTTTCATCT TCTAAACTTA ATCCCACTTG 120 TAATTCTTCT TCTTCTTGGA TTGGTTCTAC TCATTCTCTT TCATTTTCTT CAAGAAATTC 30883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTCTTCT TCTTCTTGGA TTGGTTCTAC TCATTCTCTT TCATTTTCTT CAAGAAATTC 180 ATTTACTGTA AGACCCTTTT GGATTTTGGT TAGTTTTTTT TTTTTTTTGT AGTTTTTGGT 30823 ||||||| ATTTACT... .......... .......... .......... .......... .......... 187 TAAAGATTGA ATTTTTATGT AGAGGGATAC ATGGAGGGTG ATCAATTCCA AGAATGTGGT 30763 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..AGGGATAC ATGGAGGGTG ATCAATTCCA AGAATGTGGT 225 AAGAAGGGAA ATGAGTGGAG TTATTAGAGC TGAGATGTTT GGGCAGCTCA CTAGCGGATT 30703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGGGAA ATGAGTGGAG TTATTAGAGC TGAGATGTTT GGGCAGCTCA CTAGCGGATT 285 GGAAAATGCT TGGAACAAGC TCAAAGGAGA AGGTAAAAGC AAAAAAAATA CTCTTTTTTA 30643 |||||||||| |||||||||| |||||||||| || GGAAAATGCT TGGAACAAGC TCAAAGGAGA AG........ .......... .......... 317 AATTTAAAAA TGAGCTAGTT TTATGTGAAA ATTTGAAGTA TGGGAGCTTG AATTGTTAAT 30583 .......... .......... .......... .......... .......... .......... 317 CTTGAGTAGG TACATGTTAG AGTGTGTTAG AGTCGCATGT TGGTTGGTTG GGAATGGACC 30523 .......... .......... .......... .......... .......... .......... 317 GGTGGTCTGT TATGTGGACT TGGACGATCC TCTCTTCGTG AGCTAACGTT TTGAGGTTGA 30463 .......... .......... .......... .......... .......... .......... 317 GTTAGGCGTA AGTGTCATAT CTTTATATGC TATCGTAGCT ACTTAGCTAG GTTCATACCT 30403 .......... .......... .......... .......... .......... .......... 317 GTTTGGACTC CCGGTTTATG CTCTAGTTAG GCATGAGGTG TTAAAGTGGG TTATAGTCCC 30343 .......... .......... .......... .......... .......... .......... 317 AAATCAGTTT ATATGGATTG GGTAATCCTT CCGTCGTGAG CTAGTTTTTG GAGTTAGGCC 30283 .......... .......... .......... .......... .......... .......... 317 CGGGTGTCAT ATCTGGACTG TTTTGAAAGG GAACTGAAAA TCGATACCTT GGATAGGGAT 30223 .......... .......... .......... .......... .......... .......... 317 GATAGTTCAA AAATATGACT TCAAGAACAA TGTCTTCTTG TTTTTTCATA TTCAGGATAA 30163 .......... .......... .......... .......... .......... .......... 317 TATCTTAAGA TAATTCATTA GTACATCAGA GGTGTTTATT TGATGTCATC ACAATTTCAG 30103 .......... .......... .......... .......... .......... .......... 317 TTAAAGTAAA TGCCTTTGCT AAGTAAAGGC TGTGAGATAA GATAGGAGTG AACTAAAGCT 30043 .......... .......... .......... .......... .......... .......... 317 TCTTCAAAAT GTGGCATGTA GTCATCCAAG GGTCATATCA ATCTTGGTGA ATGAGTTCAG 29983 .......... .......... .......... .......... .......... .......... 317 CAAGACTTAC AAAAAAAAAT ATAAAAACCT GGAATCGATC CTTAAATAGG AATTAAGTCT 29923 .......... .......... .......... .......... .......... .......... 317 CATTTTACAA GATTTTAACA TGCTGAAATA CAAAATAAAC ACAACCTGGA ATAGATCCTT 29863 .......... .......... .......... .......... .......... .......... 317 AATTAGGAAT TACGTCTCAT ATCCAAGATT TTAACATACA TCAGAGCTGA AAATGTATCA 29803 .......... .......... .......... .......... .......... .......... 317 GTGAGGAGTT CCTTTATGGA TGTTGAGGCT TCGGAGATAG AGTGGGACAG GAAATCCCAG 29743 .......... .......... .......... .......... .......... .......... 317 TATTTTATGC CCAAGCCAAT TGATTCTTGA AGTGGTAAGT AGTTGAGCTA ACCTTCTGCT 29683 .......... .......... .......... .......... .......... .......... 317 ATGAGAATGT TTTAGTGGAA ATGTGGGCTG TCAGGACGGG GTGATGTGGA GATAGAAGCT 29623 .......... .......... .......... .......... .......... .......... 317 ATATAAGTTG GAACATGAAG CTTAATGTCT AGACTTAAAT CCCGCGTGTT TAGAGGATTC 29563 .......... .......... .......... .......... .......... .......... 317 AACAACATGA CTGATTTCAT TTTCAGGGTG GATGATGAGT TGTCGTAGAT GGTAATATTG 29503 .......... .......... .......... .......... .......... .......... 317 ATCCATTCGA GGAGGTGCCA GATGGGGTAT AATGAATTAT ACTTCAAGAG AAGAAACCGG 29443 .......... .......... .......... .......... .......... .......... 317 GAAGATGTAT AATTGATTGT TAAACTCCAA TGAAGTGTAT GGAAAGGGAA GGGGCCTTGC 29383 .......... .......... .......... .......... .......... .......... 317 TACTATAAGG TTTTAAATGC AAAGAGTACA ACATATTAAC AACTATGGCC TATGGGTCAT 29323 .......... .......... .......... .......... .......... .......... 317 TGGATTTCTA TAACAGGGAT ATACTTCTCC TTTTTAGTTC CATACATTAT TGCTGGATAT 29263 .......... .......... .......... .......... .......... .......... 317 TATAAAGTTG TAGGAATAAA TTAATTGGAG AGTATTTTAC TGTTAAAAAT GTGACTTGTC 29203 .......... .......... .......... .......... .......... .......... 317 TGCCTTGTCC AAATTCAAAT TTCTAATCAT ATTTTCTATA TCCTCAATCT TTCAAATTTT 29143 .......... .......... .......... .......... .......... .......... 317 AGAGGTTGAA GTTCTTATTG CCCTTGTTAC TAAATATGTG GTTATATATA ATGATAAAGT 29083 .......... .......... .......... .......... .......... .......... 317 GGCTGTTGTT TGAATTCCTT GTGCCTCAGA GGTTTTGACC AAGGAAAACA TCGTGGAACC 29023 | |||||||||| |||||||||| |||||||||| .......... .......... .........A GGTTTTGACC AAGGAAAACA TCGTGGAACC 348 TATGAGGGAC ATCAGGAGGG CTCTTTTAGA AGCTGATGTA TGTTGCTTAC TGTTTCAACA 28963 |||||||||| |||||||||| |||||||||| ||||||| TATGAGGGAC ATCAGGAGGG CTCTTTTAGA AGCTGAT... .......... .......... 385 ACTAATCTCT ATACATAAAA TTTCGCCGCT TATTTAACTT TAATCGGCAG GTTAGTCTCC 28903 |||||||||| .......... .......... .......... .......... .......... GTTAGTCTCC 395 CAGTTGTCAG AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT GGTTTGATTC 28843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGTCAG AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT GGTTTGATTC 455 GAGGTGTAAA ACCAGATCAG CAACTAGTTA AGGTATGTAT TTTTGAACTG ATGACTCTGA 28783 |||||||||| |||||||||| |||||||||| || GAGGTGTAAA ACCAGATCAG CAACTAGTTA AG........ .......... .......... 487 ACAATACACA TTTGTACATT GATAACAGAC GGTCACCCTT CTGTTGTTAA TTGCTTGCAC 28723 .......... .......... .......... .......... .......... .......... 487 AATTTGCTAT CAGCTCGATC TGAACATTTT CTTTGTCTCA TTTGGTTGGT GTAGACTGTA 28663 |||||| .......... .......... .......... .......... .......... ....ACTGTA 493 CGTGACGAGC TTGTGAAACT GATGGGTGGA GAGGTTTCTG AACTGGTTTT TGCTAAATCT 28603 |||||||||| |||||||||| |||||| | | |||||||||| |||||||||| |||||||||| CGTGACGAGC TTGTGAAACT GATGGGGGAA GAGGTTTCTG AACTGGTTTT TGCTAAATCT 553 AAGCCCACCG TAATACTATT GGCCGGTCTA CAAGGTGTTG GGAAGACAAC TGTTAGTGCA 28543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCCACCG TAATACTATT GGCCGGTCTA CAAGGTGTTG GGAAGACAAC TGTTAGTGCA 613 AAGTTAGCTT TATATCTAAA GAAGCAGGTG GACTTCCAAA CTTCACCTTC TCCCTTTCCT 28483 |||||||||| |||||||||| ||||||| AAGTTAGCTT TATATCTAAA GAAGCAG... .......... .......... .......... 640 GACCTTCCTT TACTTTCTCT CACTCCCCTC TCTCTTGCTC ATTCTATTGC AATTTACATA 28423 .......... .......... .......... .......... .......... .......... 640 TATGGTCGTA GAACCTGCAT TTCTCCAAGT GCCTTCTAAT ATTAGCATTT TCCCTTTTTC 28363 .......... .......... .......... .......... .......... .......... 640 TCATTCTATT GTCAAACCAT TTATGGGCAC TGGTGGCATG GTCTGCAGGG TAAGAGTTGC 28303 || |||||||||| .......... .......... .......... .......... ........GG TAAGAGTTGC 652 ATGCTGATTG CTGGAGACGT GTACAGACCT GCTGCTATTG ACCAACTTGT TATTTTGGGT 28243 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ATGCTGATTG CTGGAGACGT GTACAGACCT GCTGCTATTG ACCAACTTGN TATTTTGGGT 712 AAACAGGTGT GCCATGTCAC ATTAGCAACA ATAAGATTAT ATATCATTTT ATTTTAGATG 28183 |||||| AAACAG.... .......... .......... .......... .......... .......... 718 CTTCTTTCTG TTCTTCTACA CCTTAACAAT CTTTATCTAT ATATCTTCTT TACGAGTACA 28123 .......... .......... .......... .......... .......... .......... 718 CAGAATATCT AAACACAACT TCATCCATTC TCATGTTCAC TGATAAGTGG GGGAACAGGT 28063 || .......... .......... .......... .......... .......... ........GT 720 TGATGTACCT GTTTATGCAG C 28042 |||||||||| |||||||||| | TGATGTACCT GTTTATGCAG C 741 hqPGS_C09HBa0168F14.1-1-_SGN-E339009+ (31062 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 28042) ******************************************************************************** EST sequence 40 +strand 642 n (File: SGN-E332256+) 1 ATCTTCTAAA CTTAATCCCA CTTGTAATTC TTCTTCTTCT TGGATTGGTT CTACTCATTC 61 TCTTTCATTT TCTTCAAGAA ATTCATTTAC TAGGGATACA TGGAGGGTGA TCAATTCCAA 121 GAATGTGGTA AGAAGGGAAA TGAGTGGAGT TATTAGAGCT GAGATGTTTG GGCAGCTCAC 181 TAGCGGATTG GAAAATGCTT GGAACAAGCT CAAAGGAGAA GAGGTTTTGA CCAAGGAAAA 241 CATCGTGGAA CCTATGAGGG ACATCAGGAG GGCTCTTTTA GAAGCTGATG TTAGTCTCCC 301 AGTTGTCAGA AGGTTTGTTC AGTCTGTTAG TGAAGAAGCC GTTGGCACTG GTTTGATTCG 361 AGGTGTAAAA CCAGATCAGC AACTAGTTAA GACTGTACGT GACGAGCTTG TGAAACTGAT 421 GGGTGGAGAG GTTTCTGAAC TGGTTTTTGC TAAATCTAAG CCCACCGTAA TACTATTGGC 481 CGGTCTACAA GGTGTTGGGA AGACAACTGT TAGTGCAAAG TTAGCTTTAT ATCTAAAGAA 541 GCAGGGTAAG AGTTGCATGC TGATTGCTGG AGACGTGTAC AGACCTGCTG CTATTGACCA 601 ACTTGTTATT TTGGGTAAAC ANGTTGATGT ACCTGTTTAT GC Predicted gene structure (within gDNA segment 31566 to 27418): Exon 1 30966 30876 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 92 221 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 222 289 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 290 391 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 28668 28516 ( 153 n); cDNA 392 544 ( 153 n); score: 1.000 Intron 5 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 28314 28237 ( 78 n); cDNA 545 622 ( 78 n); score: 0.987 Intron 6 28236 28065 ( 172 n); Pd: 0.970 (s: 0.98), Pa: 0.977 (s: 0) Exon 7 28064 28045 ( 20 n); cDNA 623 642 ( 20 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E332256+ 0.998 642 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E332256+ (30966 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 28045) Alignment (genomic DNA sequence = upper lines): ATCTTCTAAA CTTAATCCCA CTTGTAATTC TTCTTCTTCT TGGATTGGTT CTACTCATTC 30907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTCTAAA CTTAATCCCA CTTGTAATTC TTCTTCTTCT TGGATTGGTT CTACTCATTC 60 TCTTTCATTT TCTTCAAGAA ATTCATTTAC TGTAAGACCC TTTTGGATTT TGGTTAGTTT 30847 |||||||||| |||||||||| |||||||||| | TCTTTCATTT TCTTCAAGAA ATTCATTTAC T......... .......... .......... 91 TTTTTTTTTT TTGTAGTTTT TGGTTAAAGA TTGAATTTTT ATGTAGAGGG ATACATGGAG 30787 |||| |||||||||| .......... .......... .......... .......... ......AGGG ATACATGGAG 105 GGTGATCAAT TCCAAGAATG TGGTAAGAAG GGAAATGAGT GGAGTTATTA GAGCTGAGAT 30727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGATCAAT TCCAAGAATG TGGTAAGAAG GGAAATGAGT GGAGTTATTA GAGCTGAGAT 165 GTTTGGGCAG CTCACTAGCG GATTGGAAAA TGCTTGGAAC AAGCTCAAAG GAGAAGGTAA 30667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GTTTGGGCAG CTCACTAGCG GATTGGAAAA TGCTTGGAAC AAGCTCAAAG GAGAAG.... 221 AAGCAAAAAA AATACTCTTT TTTAAATTTA AAAATGAGCT AGTTTTATGT GAAAATTTGA 30607 .......... .......... .......... .......... .......... .......... 221 AGTATGGGAG CTTGAATTGT TAATCTTGAG TAGGTACATG TTAGAGTGTG TTAGAGTCGC 30547 .......... .......... .......... .......... .......... .......... 221 ATGTTGGTTG GTTGGGAATG GACCGGTGGT CTGTTATGTG GACTTGGACG ATCCTCTCTT 30487 .......... .......... .......... .......... .......... .......... 221 CGTGAGCTAA CGTTTTGAGG TTGAGTTAGG CGTAAGTGTC ATATCTTTAT ATGCTATCGT 30427 .......... .......... .......... .......... .......... .......... 221 AGCTACTTAG CTAGGTTCAT ACCTGTTTGG ACTCCCGGTT TATGCTCTAG TTAGGCATGA 30367 .......... .......... .......... .......... .......... .......... 221 GGTGTTAAAG TGGGTTATAG TCCCAAATCA GTTTATATGG ATTGGGTAAT CCTTCCGTCG 30307 .......... .......... .......... .......... .......... .......... 221 TGAGCTAGTT TTTGGAGTTA GGCCCGGGTG TCATATCTGG ACTGTTTTGA AAGGGAACTG 30247 .......... .......... .......... .......... .......... .......... 221 AAAATCGATA CCTTGGATAG GGATGATAGT TCAAAAATAT GACTTCAAGA ACAATGTCTT 30187 .......... .......... .......... .......... .......... .......... 221 CTTGTTTTTT CATATTCAGG ATAATATCTT AAGATAATTC ATTAGTACAT CAGAGGTGTT 30127 .......... .......... .......... .......... .......... .......... 221 TATTTGATGT CATCACAATT TCAGTTAAAG TAAATGCCTT TGCTAAGTAA AGGCTGTGAG 30067 .......... .......... .......... .......... .......... .......... 221 ATAAGATAGG AGTGAACTAA AGCTTCTTCA AAATGTGGCA TGTAGTCATC CAAGGGTCAT 30007 .......... .......... .......... .......... .......... .......... 221 ATCAATCTTG GTGAATGAGT TCAGCAAGAC TTACAAAAAA AAATATAAAA ACCTGGAATC 29947 .......... .......... .......... .......... .......... .......... 221 GATCCTTAAA TAGGAATTAA GTCTCATTTT ACAAGATTTT AACATGCTGA AATACAAAAT 29887 .......... .......... .......... .......... .......... .......... 221 AAACACAACC TGGAATAGAT CCTTAATTAG GAATTACGTC TCATATCCAA GATTTTAACA 29827 .......... .......... .......... .......... .......... .......... 221 TACATCAGAG CTGAAAATGT ATCAGTGAGG AGTTCCTTTA TGGATGTTGA GGCTTCGGAG 29767 .......... .......... .......... .......... .......... .......... 221 ATAGAGTGGG ACAGGAAATC CCAGTATTTT ATGCCCAAGC CAATTGATTC TTGAAGTGGT 29707 .......... .......... .......... .......... .......... .......... 221 AAGTAGTTGA GCTAACCTTC TGCTATGAGA ATGTTTTAGT GGAAATGTGG GCTGTCAGGA 29647 .......... .......... .......... .......... .......... .......... 221 CGGGGTGATG TGGAGATAGA AGCTATATAA GTTGGAACAT GAAGCTTAAT GTCTAGACTT 29587 .......... .......... .......... .......... .......... .......... 221 AAATCCCGCG TGTTTAGAGG ATTCAACAAC ATGACTGATT TCATTTTCAG GGTGGATGAT 29527 .......... .......... .......... .......... .......... .......... 221 GAGTTGTCGT AGATGGTAAT ATTGATCCAT TCGAGGAGGT GCCAGATGGG GTATAATGAA 29467 .......... .......... .......... .......... .......... .......... 221 TTATACTTCA AGAGAAGAAA CCGGGAAGAT GTATAATTGA TTGTTAAACT CCAATGAAGT 29407 .......... .......... .......... .......... .......... .......... 221 GTATGGAAAG GGAAGGGGCC TTGCTACTAT AAGGTTTTAA ATGCAAAGAG TACAACATAT 29347 .......... .......... .......... .......... .......... .......... 221 TAACAACTAT GGCCTATGGG TCATTGGATT TCTATAACAG GGATATACTT CTCCTTTTTA 29287 .......... .......... .......... .......... .......... .......... 221 GTTCCATACA TTATTGCTGG ATATTATAAA GTTGTAGGAA TAAATTAATT GGAGAGTATT 29227 .......... .......... .......... .......... .......... .......... 221 TTACTGTTAA AAATGTGACT TGTCTGCCTT GTCCAAATTC AAATTTCTAA TCATATTTTC 29167 .......... .......... .......... .......... .......... .......... 221 TATATCCTCA ATCTTTCAAA TTTTAGAGGT TGAAGTTCTT ATTGCCCTTG TTACTAAATA 29107 .......... .......... .......... .......... .......... .......... 221 TGTGGTTATA TATAATGATA AAGTGGCTGT TGTTTGAATT CCTTGTGCCT CAGAGGTTTT 29047 ||||||| .......... .......... .......... .......... .......... ...AGGTTTT 228 GACCAAGGAA AACATCGTGG AACCTATGAG GGACATCAGG AGGGCTCTTT TAGAAGCTGA 28987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAAGGAA AACATCGTGG AACCTATGAG GGACATCAGG AGGGCTCTTT TAGAAGCTGA 288 TGTATGTTGC TTACTGTTTC AACAACTAAT CTCTATACAT AAAATTTCGC CGCTTATTTA 28927 | T......... .......... .......... .......... .......... .......... 289 ACTTTAATCG GCAGGTTAGT CTCCCAGTTG TCAGAAGGTT TGTTCAGTCT GTTAGTGAAG 28867 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTTAGT CTCCCAGTTG TCAGAAGGTT TGTTCAGTCT GTTAGTGAAG 335 AAGCCGTTGG CACTGGTTTG ATTCGAGGTG TAAAACCAGA TCAGCAACTA GTTAAGGTAT 28807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AAGCCGTTGG CACTGGTTTG ATTCGAGGTG TAAAACCAGA TCAGCAACTA GTTAAG.... 391 GTATTTTTGA ACTGATGACT CTGAACAATA CACATTTGTA CATTGATAAC AGACGGTCAC 28747 .......... .......... .......... .......... .......... .......... 391 CCTTCTGTTG TTAATTGCTT GCACAATTTG CTATCAGCTC GATCTGAACA TTTTCTTTGT 28687 .......... .......... .......... .......... .......... .......... 391 CTCATTTGGT TGGTGTAGAC TGTACGTGAC GAGCTTGTGA AACTGATGGG TGGAGAGGTT 28627 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AC TGTACGTGAC GAGCTTGTGA AACTGATGGG TGGAGAGGTT 433 TCTGAACTGG TTTTTGCTAA ATCTAAGCCC ACCGTAATAC TATTGGCCGG TCTACAAGGT 28567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAACTGG TTTTTGCTAA ATCTAAGCCC ACCGTAATAC TATTGGCCGG TCTACAAGGT 493 GTTGGGAAGA CAACTGTTAG TGCAAAGTTA GCTTTATATC TAAAGAAGCA GGTGGACTTC 28507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTTGGGAAGA CAACTGTTAG TGCAAAGTTA GCTTTATATC TAAAGAAGCA G......... 544 CAAACTTCAC CTTCTCCCTT TCCTGACCTT CCTTTACTTT CTCTCACTCC CCTCTCTCTT 28447 .......... .......... .......... .......... .......... .......... 544 GCTCATTCTA TTGCAATTTA CATATATGGT CGTAGAACCT GCATTTCTCC AAGTGCCTTC 28387 .......... .......... .......... .......... .......... .......... 544 TAATATTAGC ATTTTCCCTT TTTCTCATTC TATTGTCAAA CCATTTATGG GCACTGGTGG 28327 .......... .......... .......... .......... .......... .......... 544 CATGGTCTGC AGGGTAAGAG TTGCATGCTG ATTGCTGGAG ACGTGTACAG ACCTGCTGCT 28267 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GGTAAGAG TTGCATGCTG ATTGCTGGAG ACGTGTACAG ACCTGCTGCT 592 ATTGACCAAC TTGTTATTTT GGGTAAACAG GTGTGCCATG TCACATTAGC AACAATAAGA 28207 |||||||||| |||||||||| ||||||||| ATTGACCAAC TTGTTATTTT GGGTAAACAN .......... .......... .......... 622 TTATATATCA TTTTATTTTA GATGCTTCTT TCTGTTCTTC TACACCTTAA CAATCTTTAT 28147 .......... .......... .......... .......... .......... .......... 622 CTATATATCT TCTTTACGAG TACACAGAAT ATCTAAACAC AACTTCATCC ATTCTCATGT 28087 .......... .......... .......... .......... .......... .......... 622 TCACTGATAA GTGGGGGAAC AGGTTGATGT ACCTGTTTAT GC 28045 |||||||| |||||||||| || .......... .......... ..GTTGATGT ACCTGTTTAT GC 642 hqPGS_C09HBa0168F14.1-1-_SGN-E332256+ (30966 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 28045) ******************************************************************************** EST sequence 26 +strand 199 n (File: SGN-E250723+) 1 GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCGGTCT ACAAGGTGTC 61 GGGAAGACAA CTGTTAGTGC AAAGTTAGCT TTATATCTAA AGAAGCAGGG TAAGAGTTGC 121 ATGCTGATTG CTGGAGACGT GTACAGACCT GCTGCTATTG ACCAACTTGT TATTTTGGGT 181 AAACAGGTTG ATGTACCTG Predicted gene structure (within gDNA segment 29223 to 27515): Exon 1 28623 28516 ( 108 n); cDNA 1 108 ( 108 n); score: 0.991 Intron 1 28515 28315 ( 201 n); Pd: 0.772 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 2 28314 28237 ( 78 n); cDNA 109 186 ( 78 n); score: 1.000 Intron 2 28236 28065 ( 172 n); Pd: 0.970 (s: 1.00), Pa: 0.977 (s: 0) Exon 3 28064 28052 ( 13 n); cDNA 187 199 ( 13 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E250723+ 0.995 199 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E250723+ (28623 28516,28314 28237,28064 28052) Alignment (genomic DNA sequence = upper lines): GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCGGTCT ACAAGGTGTT 28564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCGGTCT ACAAGGTGTC 60 GGGAAGACAA CTGTTAGTGC AAAGTTAGCT TTATATCTAA AGAAGCAGGT GGACTTCCAA 28504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGGAAGACAA CTGTTAGTGC AAAGTTAGCT TTATATCTAA AGAAGCAG.. .......... 108 ACTTCACCTT CTCCCTTTCC TGACCTTCCT TTACTTTCTC TCACTCCCCT CTCTCTTGCT 28444 .......... .......... .......... .......... .......... .......... 108 CATTCTATTG CAATTTACAT ATATGGTCGT AGAACCTGCA TTTCTCCAAG TGCCTTCTAA 28384 .......... .......... .......... .......... .......... .......... 108 TATTAGCATT TTCCCTTTTT CTCATTCTAT TGTCAAACCA TTTATGGGCA CTGGTGGCAT 28324 .......... .......... .......... .......... .......... .......... 108 GGTCTGCAGG GTAAGAGTTG CATGCTGATT GCTGGAGACG TGTACAGACC TGCTGCTATT 28264 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G GTAAGAGTTG CATGCTGATT GCTGGAGACG TGTACAGACC TGCTGCTATT 159 GACCAACTTG TTATTTTGGG TAAACAGGTG TGCCATGTCA CATTAGCAAC AATAAGATTA 28204 |||||||||| |||||||||| ||||||| GACCAACTTG TTATTTTGGG TAAACAG... .......... .......... .......... 186 TATATCATTT TATTTTAGAT GCTTCTTTCT GTTCTTCTAC ACCTTAACAA TCTTTATCTA 28144 .......... .......... .......... .......... .......... .......... 186 TATATCTTCT TTACGAGTAC ACAGAATATC TAAACACAAC TTCATCCATT CTCATGTTCA 28084 .......... .......... .......... .......... .......... .......... 186 CTGATAAGTG GGGGAACAGG TTGATGTACC TG 28052 | |||||||||| || .......... .........G TTGATGTACC TG 199 hqPGS_C09HBa0168F14.1-1-_SGN-E250723+ (28623 28516,28314 28237,28064 28052) ******************************************************************************** EST sequence 39 +strand 664 n (File: SGN-E343935+) 1 CCACTGCTTC TTTCACTTCA ACTATGGCTT CTCACCATTT CTTTCCACTT TCTAAAGCCA 61 CCCTTTCATC TTCTAAACTT AATCCCACTT GTAATTCTTC TTCTTCTTGG ATTGGTTCTA 121 CTCATTCTCT TTCATTTTCT TCAAGAAATT CATTTACTAG GGATACATGG AGGGTGATCA 181 ATTCCAAGAA TGTGGTAAGA AGGGAAATGA GTGGAGTTAT TAGAGCTGAG ATGTTTGGGC 241 AGCTCACTAG CGGATTGGAA AATGCTTGGA ACAAGCTCAA AGGAGAAGAG GTTTTGACCA 301 AGGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC TCTTTTAGAA GCTGATGTTA 361 GTCTCCCAGT TGTCAGAAGG TTTGTTCAGT CTGTTAGTGA AGAAGCCGTT GGCACTGGTT 421 TGATTCGAGG TGTAAAACCA GATCAGCAAC TAGTTAAGAC TGTACGTGAC GAGCTTGTGA 481 AACTGATGGG TGGAGAGGTT TCTGAACTGG TTTTTGCTAA ATCTAAGCCC ACCGTAATAC 541 TATTGGCCGG TCTACAAGGT GTTGGGAAGA CAACTGTTAG TGCAAAGTTA GCTTTATATC 601 TAAAGAAGCA GGGTAAGAGT TGCATGCTGA TTGCTGGAGA CGTGTACAGA CCTGCTGCTA 661 TTGA Predicted gene structure (within gDNA segment 31633 to 27652): Exon 1 31033 30876 ( 158 n); cDNA 1 158 ( 158 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 159 288 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 289 356 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 357 458 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 28668 28516 ( 153 n); cDNA 459 611 ( 153 n); score: 1.000 Intron 5 28515 28315 ( 201 n); Pd: 0.772 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 28314 28262 ( 53 n); cDNA 612 664 ( 53 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E343935+ 1.000 664 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E343935+ (31033 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28262) Alignment (genomic DNA sequence = upper lines): CCACTGCTTC TTTCACTTCA ACTATGGCTT CTCACCATTT CTTTCCACTT TCTAAAGCCA 30974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGCTTC TTTCACTTCA ACTATGGCTT CTCACCATTT CTTTCCACTT TCTAAAGCCA 60 CCCTTTCATC TTCTAAACTT AATCCCACTT GTAATTCTTC TTCTTCTTGG ATTGGTTCTA 30914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTTCATC TTCTAAACTT AATCCCACTT GTAATTCTTC TTCTTCTTGG ATTGGTTCTA 120 CTCATTCTCT TTCATTTTCT TCAAGAAATT CATTTACTGT AAGACCCTTT TGGATTTTGG 30854 |||||||||| |||||||||| |||||||||| |||||||| CTCATTCTCT TTCATTTTCT TCAAGAAATT CATTTACT.. .......... .......... 158 TTAGTTTTTT TTTTTTTTTG TAGTTTTTGG TTAAAGATTG AATTTTTATG TAGAGGGATA 30794 ||||||| .......... .......... .......... .......... .......... ...AGGGATA 165 CATGGAGGGT GATCAATTCC AAGAATGTGG TAAGAAGGGA AATGAGTGGA GTTATTAGAG 30734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAGGGT GATCAATTCC AAGAATGTGG TAAGAAGGGA AATGAGTGGA GTTATTAGAG 225 CTGAGATGTT TGGGCAGCTC ACTAGCGGAT TGGAAAATGC TTGGAACAAG CTCAAAGGAG 30674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGATGTT TGGGCAGCTC ACTAGCGGAT TGGAAAATGC TTGGAACAAG CTCAAAGGAG 285 AAGGTAAAAG CAAAAAAAAT ACTCTTTTTT AAATTTAAAA ATGAGCTAGT TTTATGTGAA 30614 ||| AAG....... .......... .......... .......... .......... .......... 288 AATTTGAAGT ATGGGAGCTT GAATTGTTAA TCTTGAGTAG GTACATGTTA GAGTGTGTTA 30554 .......... .......... .......... .......... .......... .......... 288 GAGTCGCATG TTGGTTGGTT GGGAATGGAC CGGTGGTCTG TTATGTGGAC TTGGACGATC 30494 .......... .......... .......... .......... .......... .......... 288 CTCTCTTCGT GAGCTAACGT TTTGAGGTTG AGTTAGGCGT AAGTGTCATA TCTTTATATG 30434 .......... .......... .......... .......... .......... .......... 288 CTATCGTAGC TACTTAGCTA GGTTCATACC TGTTTGGACT CCCGGTTTAT GCTCTAGTTA 30374 .......... .......... .......... .......... .......... .......... 288 GGCATGAGGT GTTAAAGTGG GTTATAGTCC CAAATCAGTT TATATGGATT GGGTAATCCT 30314 .......... .......... .......... .......... .......... .......... 288 TCCGTCGTGA GCTAGTTTTT GGAGTTAGGC CCGGGTGTCA TATCTGGACT GTTTTGAAAG 30254 .......... .......... .......... .......... .......... .......... 288 GGAACTGAAA ATCGATACCT TGGATAGGGA TGATAGTTCA AAAATATGAC TTCAAGAACA 30194 .......... .......... .......... .......... .......... .......... 288 ATGTCTTCTT GTTTTTTCAT ATTCAGGATA ATATCTTAAG ATAATTCATT AGTACATCAG 30134 .......... .......... .......... .......... .......... .......... 288 AGGTGTTTAT TTGATGTCAT CACAATTTCA GTTAAAGTAA ATGCCTTTGC TAAGTAAAGG 30074 .......... .......... .......... .......... .......... .......... 288 CTGTGAGATA AGATAGGAGT GAACTAAAGC TTCTTCAAAA TGTGGCATGT AGTCATCCAA 30014 .......... .......... .......... .......... .......... .......... 288 GGGTCATATC AATCTTGGTG AATGAGTTCA GCAAGACTTA CAAAAAAAAA TATAAAAACC 29954 .......... .......... .......... .......... .......... .......... 288 TGGAATCGAT CCTTAAATAG GAATTAAGTC TCATTTTACA AGATTTTAAC ATGCTGAAAT 29894 .......... .......... .......... .......... .......... .......... 288 ACAAAATAAA CACAACCTGG AATAGATCCT TAATTAGGAA TTACGTCTCA TATCCAAGAT 29834 .......... .......... .......... .......... .......... .......... 288 TTTAACATAC ATCAGAGCTG AAAATGTATC AGTGAGGAGT TCCTTTATGG ATGTTGAGGC 29774 .......... .......... .......... .......... .......... .......... 288 TTCGGAGATA GAGTGGGACA GGAAATCCCA GTATTTTATG CCCAAGCCAA TTGATTCTTG 29714 .......... .......... .......... .......... .......... .......... 288 AAGTGGTAAG TAGTTGAGCT AACCTTCTGC TATGAGAATG TTTTAGTGGA AATGTGGGCT 29654 .......... .......... .......... .......... .......... .......... 288 GTCAGGACGG GGTGATGTGG AGATAGAAGC TATATAAGTT GGAACATGAA GCTTAATGTC 29594 .......... .......... .......... .......... .......... .......... 288 TAGACTTAAA TCCCGCGTGT TTAGAGGATT CAACAACATG ACTGATTTCA TTTTCAGGGT 29534 .......... .......... .......... .......... .......... .......... 288 GGATGATGAG TTGTCGTAGA TGGTAATATT GATCCATTCG AGGAGGTGCC AGATGGGGTA 29474 .......... .......... .......... .......... .......... .......... 288 TAATGAATTA TACTTCAAGA GAAGAAACCG GGAAGATGTA TAATTGATTG TTAAACTCCA 29414 .......... .......... .......... .......... .......... .......... 288 ATGAAGTGTA TGGAAAGGGA AGGGGCCTTG CTACTATAAG GTTTTAAATG CAAAGAGTAC 29354 .......... .......... .......... .......... .......... .......... 288 AACATATTAA CAACTATGGC CTATGGGTCA TTGGATTTCT ATAACAGGGA TATACTTCTC 29294 .......... .......... .......... .......... .......... .......... 288 CTTTTTAGTT CCATACATTA TTGCTGGATA TTATAAAGTT GTAGGAATAA ATTAATTGGA 29234 .......... .......... .......... .......... .......... .......... 288 GAGTATTTTA CTGTTAAAAA TGTGACTTGT CTGCCTTGTC CAAATTCAAA TTTCTAATCA 29174 .......... .......... .......... .......... .......... .......... 288 TATTTTCTAT ATCCTCAATC TTTCAAATTT TAGAGGTTGA AGTTCTTATT GCCCTTGTTA 29114 .......... .......... .......... .......... .......... .......... 288 CTAAATATGT GGTTATATAT AATGATAAAG TGGCTGTTGT TTGAATTCCT TGTGCCTCAG 29054 .......... .......... .......... .......... .......... .......... 288 AGGTTTTGAC CAAGGAAAAC ATCGTGGAAC CTATGAGGGA CATCAGGAGG GCTCTTTTAG 28994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTTTGAC CAAGGAAAAC ATCGTGGAAC CTATGAGGGA CATCAGGAGG GCTCTTTTAG 348 AAGCTGATGT ATGTTGCTTA CTGTTTCAAC AACTAATCTC TATACATAAA ATTTCGCCGC 28934 |||||||| AAGCTGAT.. .......... .......... .......... .......... .......... 356 TTATTTAACT TTAATCGGCA GGTTAGTCTC CCAGTTGTCA GAAGGTTTGT TCAGTCTGTT 28874 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTAGTCTC CCAGTTGTCA GAAGGTTTGT TCAGTCTGTT 395 AGTGAAGAAG CCGTTGGCAC TGGTTTGATT CGAGGTGTAA AACCAGATCA GCAACTAGTT 28814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGAAGAAG CCGTTGGCAC TGGTTTGATT CGAGGTGTAA AACCAGATCA GCAACTAGTT 455 AAGGTATGTA TTTTTGAACT GATGACTCTG AACAATACAC ATTTGTACAT TGATAACAGA 28754 ||| AAG....... .......... .......... .......... .......... .......... 458 CGGTCACCCT TCTGTTGTTA ATTGCTTGCA CAATTTGCTA TCAGCTCGAT CTGAACATTT 28694 .......... .......... .......... .......... .......... .......... 458 TCTTTGTCTC ATTTGGTTGG TGTAGACTGT ACGTGACGAG CTTGTGAAAC TGATGGGTGG 28634 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ACTGT ACGTGACGAG CTTGTGAAAC TGATGGGTGG 493 AGAGGTTTCT GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCGGTCT 28574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTTTCT GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCGGTCT 553 ACAAGGTGTT GGGAAGACAA CTGTTAGTGC AAAGTTAGCT TTATATCTAA AGAAGCAGGT 28514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACAAGGTGTT GGGAAGACAA CTGTTAGTGC AAAGTTAGCT TTATATCTAA AGAAGCAG.. 611 GGACTTCCAA ACTTCACCTT CTCCCTTTCC TGACCTTCCT TTACTTTCTC TCACTCCCCT 28454 .......... .......... .......... .......... .......... .......... 611 CTCTCTTGCT CATTCTATTG CAATTTACAT ATATGGTCGT AGAACCTGCA TTTCTCCAAG 28394 .......... .......... .......... .......... .......... .......... 611 TGCCTTCTAA TATTAGCATT TTCCCTTTTT CTCATTCTAT TGTCAAACCA TTTATGGGCA 28334 .......... .......... .......... .......... .......... .......... 611 CTGGTGGCAT GGTCTGCAGG GTAAGAGTTG CATGCTGATT GCTGGAGACG TGTACAGACC 28274 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G GTAAGAGTTG CATGCTGATT GCTGGAGACG TGTACAGACC 652 TGCTGCTATT GA 28262 |||||||||| || TGCTGCTATT GA 664 hqPGS_C09HBa0168F14.1-1-_SGN-E343935+ (31033 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28262) ******************************************************************************** EST sequence 14 +strand 609 n (File: SGN-E211661+) 1 AAAAAGCTTC AATTTTTGCT TCTTCTTTTG ATTGTTTGTT CTTTAATCCT ACCATGGAAG 61 CCACTGCTTC TTTCACTTCA ACTATGGCTT CTCACCATTT CTTTCCACTT TCTAAAGCCA 121 CCCTTTCATC TTCTAAACTT AATCCCACTT GTAATTCTTC TTCTTCTTGG ATTGGTTCTA 181 CTCATTCTCT TTCATTTTCT TCAAGAAATT CATTTACTAG GGATACATGG AGGGTGATCA 241 ATTCCAAGAA TGTGGTAAGA AGGGAAATGA GTGGAGTTAT TAGAGCTGAG ATGTTTGGGC 301 AGCTCACTAG CGGATTGGAA AATGCTTGGA ACAAGCTCAA AGGAGAAGAG GTTTTGACCA 361 AGGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC TCTTTTAGAA GCTGATGTTA 421 GTCTCCCAGT TGTCAGAAGG TTTGTTCAGT CTGTTAGTGA AGAAGCCGTT GGCACTGGTT 481 TGATTCGAGG TGTAAAACCA GATCAGCAAC TAGTTAAGAC TGTACGTGAC GAGCTTGTGA 541 AACTGATGGG TNGAGAGGTT TCTGAACTGG TTTTTGCTAA ATCTAAGCCC ACCGTAATAC 601 TATTGGCCG Predicted gene structure (within gDNA segment 31693 to 27968): Exon 1 31093 30876 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 219 348 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 349 416 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 417 518 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 5 28668 28578 ( 91 n); cDNA 519 609 ( 91 n); score: 0.989 MATCH C09HBa0168F14.1-1- SGN-E211661+ 0.998 609 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E211661+ (31093 30876,30800 30671,29053 28986,28912 28811,28668 28578) Alignment (genomic DNA sequence = upper lines): AAAAAGCTTC AATTTTTGCT TCTTCTTTTG ATTGTTTGTT CTTTAATCCT ACCATGGAAG 31034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTTC AATTTTTGCT TCTTCTTTTG ATTGTTTGTT CTTTAATCCT ACCATGGAAG 60 CCACTGCTTC TTTCACTTCA ACTATGGCTT CTCACCATTT CTTTCCACTT TCTAAAGCCA 30974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTGCTTC TTTCACTTCA ACTATGGCTT CTCACCATTT CTTTCCACTT TCTAAAGCCA 120 CCCTTTCATC TTCTAAACTT AATCCCACTT GTAATTCTTC TTCTTCTTGG ATTGGTTCTA 30914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTTCATC TTCTAAACTT AATCCCACTT GTAATTCTTC TTCTTCTTGG ATTGGTTCTA 180 CTCATTCTCT TTCATTTTCT TCAAGAAATT CATTTACTGT AAGACCCTTT TGGATTTTGG 30854 |||||||||| |||||||||| |||||||||| |||||||| CTCATTCTCT TTCATTTTCT TCAAGAAATT CATTTACT.. .......... .......... 218 TTAGTTTTTT TTTTTTTTTG TAGTTTTTGG TTAAAGATTG AATTTTTATG TAGAGGGATA 30794 ||||||| .......... .......... .......... .......... .......... ...AGGGATA 225 CATGGAGGGT GATCAATTCC AAGAATGTGG TAAGAAGGGA AATGAGTGGA GTTATTAGAG 30734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGAGGGT GATCAATTCC AAGAATGTGG TAAGAAGGGA AATGAGTGGA GTTATTAGAG 285 CTGAGATGTT TGGGCAGCTC ACTAGCGGAT TGGAAAATGC TTGGAACAAG CTCAAAGGAG 30674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGATGTT TGGGCAGCTC ACTAGCGGAT TGGAAAATGC TTGGAACAAG CTCAAAGGAG 345 AAGGTAAAAG CAAAAAAAAT ACTCTTTTTT AAATTTAAAA ATGAGCTAGT TTTATGTGAA 30614 ||| AAG....... .......... .......... .......... .......... .......... 348 AATTTGAAGT ATGGGAGCTT GAATTGTTAA TCTTGAGTAG GTACATGTTA GAGTGTGTTA 30554 .......... .......... .......... .......... .......... .......... 348 GAGTCGCATG TTGGTTGGTT GGGAATGGAC CGGTGGTCTG TTATGTGGAC TTGGACGATC 30494 .......... .......... .......... .......... .......... .......... 348 CTCTCTTCGT GAGCTAACGT TTTGAGGTTG AGTTAGGCGT AAGTGTCATA TCTTTATATG 30434 .......... .......... .......... .......... .......... .......... 348 CTATCGTAGC TACTTAGCTA GGTTCATACC TGTTTGGACT CCCGGTTTAT GCTCTAGTTA 30374 .......... .......... .......... .......... .......... .......... 348 GGCATGAGGT GTTAAAGTGG GTTATAGTCC CAAATCAGTT TATATGGATT GGGTAATCCT 30314 .......... .......... .......... .......... .......... .......... 348 TCCGTCGTGA GCTAGTTTTT GGAGTTAGGC CCGGGTGTCA TATCTGGACT GTTTTGAAAG 30254 .......... .......... .......... .......... .......... .......... 348 GGAACTGAAA ATCGATACCT TGGATAGGGA TGATAGTTCA AAAATATGAC TTCAAGAACA 30194 .......... .......... .......... .......... .......... .......... 348 ATGTCTTCTT GTTTTTTCAT ATTCAGGATA ATATCTTAAG ATAATTCATT AGTACATCAG 30134 .......... .......... .......... .......... .......... .......... 348 AGGTGTTTAT TTGATGTCAT CACAATTTCA GTTAAAGTAA ATGCCTTTGC TAAGTAAAGG 30074 .......... .......... .......... .......... .......... .......... 348 CTGTGAGATA AGATAGGAGT GAACTAAAGC TTCTTCAAAA TGTGGCATGT AGTCATCCAA 30014 .......... .......... .......... .......... .......... .......... 348 GGGTCATATC AATCTTGGTG AATGAGTTCA GCAAGACTTA CAAAAAAAAA TATAAAAACC 29954 .......... .......... .......... .......... .......... .......... 348 TGGAATCGAT CCTTAAATAG GAATTAAGTC TCATTTTACA AGATTTTAAC ATGCTGAAAT 29894 .......... .......... .......... .......... .......... .......... 348 ACAAAATAAA CACAACCTGG AATAGATCCT TAATTAGGAA TTACGTCTCA TATCCAAGAT 29834 .......... .......... .......... .......... .......... .......... 348 TTTAACATAC ATCAGAGCTG AAAATGTATC AGTGAGGAGT TCCTTTATGG ATGTTGAGGC 29774 .......... .......... .......... .......... .......... .......... 348 TTCGGAGATA GAGTGGGACA GGAAATCCCA GTATTTTATG CCCAAGCCAA TTGATTCTTG 29714 .......... .......... .......... .......... .......... .......... 348 AAGTGGTAAG TAGTTGAGCT AACCTTCTGC TATGAGAATG TTTTAGTGGA AATGTGGGCT 29654 .......... .......... .......... .......... .......... .......... 348 GTCAGGACGG GGTGATGTGG AGATAGAAGC TATATAAGTT GGAACATGAA GCTTAATGTC 29594 .......... .......... .......... .......... .......... .......... 348 TAGACTTAAA TCCCGCGTGT TTAGAGGATT CAACAACATG ACTGATTTCA TTTTCAGGGT 29534 .......... .......... .......... .......... .......... .......... 348 GGATGATGAG TTGTCGTAGA TGGTAATATT GATCCATTCG AGGAGGTGCC AGATGGGGTA 29474 .......... .......... .......... .......... .......... .......... 348 TAATGAATTA TACTTCAAGA GAAGAAACCG GGAAGATGTA TAATTGATTG TTAAACTCCA 29414 .......... .......... .......... .......... .......... .......... 348 ATGAAGTGTA TGGAAAGGGA AGGGGCCTTG CTACTATAAG GTTTTAAATG CAAAGAGTAC 29354 .......... .......... .......... .......... .......... .......... 348 AACATATTAA CAACTATGGC CTATGGGTCA TTGGATTTCT ATAACAGGGA TATACTTCTC 29294 .......... .......... .......... .......... .......... .......... 348 CTTTTTAGTT CCATACATTA TTGCTGGATA TTATAAAGTT GTAGGAATAA ATTAATTGGA 29234 .......... .......... .......... .......... .......... .......... 348 GAGTATTTTA CTGTTAAAAA TGTGACTTGT CTGCCTTGTC CAAATTCAAA TTTCTAATCA 29174 .......... .......... .......... .......... .......... .......... 348 TATTTTCTAT ATCCTCAATC TTTCAAATTT TAGAGGTTGA AGTTCTTATT GCCCTTGTTA 29114 .......... .......... .......... .......... .......... .......... 348 CTAAATATGT GGTTATATAT AATGATAAAG TGGCTGTTGT TTGAATTCCT TGTGCCTCAG 29054 .......... .......... .......... .......... .......... .......... 348 AGGTTTTGAC CAAGGAAAAC ATCGTGGAAC CTATGAGGGA CATCAGGAGG GCTCTTTTAG 28994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTTTGAC CAAGGAAAAC ATCGTGGAAC CTATGAGGGA CATCAGGAGG GCTCTTTTAG 408 AAGCTGATGT ATGTTGCTTA CTGTTTCAAC AACTAATCTC TATACATAAA ATTTCGCCGC 28934 |||||||| AAGCTGAT.. .......... .......... .......... .......... .......... 416 TTATTTAACT TTAATCGGCA GGTTAGTCTC CCAGTTGTCA GAAGGTTTGT TCAGTCTGTT 28874 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTAGTCTC CCAGTTGTCA GAAGGTTTGT TCAGTCTGTT 455 AGTGAAGAAG CCGTTGGCAC TGGTTTGATT CGAGGTGTAA AACCAGATCA GCAACTAGTT 28814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGAAGAAG CCGTTGGCAC TGGTTTGATT CGAGGTGTAA AACCAGATCA GCAACTAGTT 515 AAGGTATGTA TTTTTGAACT GATGACTCTG AACAATACAC ATTTGTACAT TGATAACAGA 28754 ||| AAG....... .......... .......... .......... .......... .......... 518 CGGTCACCCT TCTGTTGTTA ATTGCTTGCA CAATTTGCTA TCAGCTCGAT CTGAACATTT 28694 .......... .......... .......... .......... .......... .......... 518 TCTTTGTCTC ATTTGGTTGG TGTAGACTGT ACGTGACGAG CTTGTGAAAC TGATGGGTGG 28634 ||||| |||||||||| |||||||||| |||||||| | .......... .......... .....ACTGT ACGTGACGAG CTTGTGAAAC TGATGGGTNG 553 AGAGGTTTCT GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCG 28578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGAGGTTTCT GAACTGGTTT TTGCTAAATC TAAGCCCACC GTAATACTAT TGGCCG 609 hqPGS_C09HBa0168F14.1-1-_SGN-E211661+ (31093 30876,30800 30671,29053 28986,28912 28811,28668 28578) ******************************************************************************** EST sequence 45 +strand 543 n (File: SGN-E267086+) 1 TTTAATCCTA CCATGGAAGC CACTGCTTCT TTCACTTCAA CTATGGCTTC TCACCATTTC 61 TTTCCACTTT CTAAAGCCAC CCTTTCATCT TCTAAACTTA ATCCCACTTG TAATTCTTCT 121 TCTTCTTGGA TTGGTTCTAC TCATTCTCTT TCATTTTCTT CAAGAAATTC ATTTACTAGG 181 GATACATGGA GGGTGATCAA TTCCAAGAAT GTGGTAAGAA GGGAAATGAG TGGAGTTATT 241 AGAGCTGAGA TGTTTGGGCA GCTCACTAGC GGATTGGAAA ATGCTTGGAA CAAGCTCAAA 301 GGAGAAGAGG TTTTGACCAA GGAAAACATC GTGGAACCTA TGAGGGACAT CAGGAGGGCT 361 CTTTTAGAAG CTGATGTTAG TCTCCCAGTT GTCAGAAGGT TTGTTCAGTC TGTTAGTGAA 421 GAAGCCGTTG GCACTGGTTT GATTCGAGGT GTAAAACCAG ATCAGCAACT AGTTAAGACT 481 GTACGTGACG AGCTTGTGAA ACTGATGGGT GGAGAGGTTT CTGAACTGGT TTTTGCTAAA 541 TCT Predicted gene structure (within gDNA segment 31652 to 27993): Exon 1 31052 30876 ( 177 n); cDNA 1 177 ( 177 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 178 307 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 308 375 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 376 477 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 28668 28603 ( 66 n); cDNA 478 543 ( 66 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E267086+ 1.000 543 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E267086+ (31052 30876,30800 30671,29053 28986,28912 28811,28668 28603) Alignment (genomic DNA sequence = upper lines): TTTAATCCTA CCATGGAAGC CACTGCTTCT TTCACTTCAA CTATGGCTTC TCACCATTTC 30993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAATCCTA CCATGGAAGC CACTGCTTCT TTCACTTCAA CTATGGCTTC TCACCATTTC 60 TTTCCACTTT CTAAAGCCAC CCTTTCATCT TCTAAACTTA ATCCCACTTG TAATTCTTCT 30933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCACTTT CTAAAGCCAC CCTTTCATCT TCTAAACTTA ATCCCACTTG TAATTCTTCT 120 TCTTCTTGGA TTGGTTCTAC TCATTCTCTT TCATTTTCTT CAAGAAATTC ATTTACTGTA 30873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCTTCTTGGA TTGGTTCTAC TCATTCTCTT TCATTTTCTT CAAGAAATTC ATTTACT... 177 AGACCCTTTT GGATTTTGGT TAGTTTTTTT TTTTTTTTGT AGTTTTTGGT TAAAGATTGA 30813 .......... .......... .......... .......... .......... .......... 177 ATTTTTATGT AGAGGGATAC ATGGAGGGTG ATCAATTCCA AGAATGTGGT AAGAAGGGAA 30753 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..AGGGATAC ATGGAGGGTG ATCAATTCCA AGAATGTGGT AAGAAGGGAA 225 ATGAGTGGAG TTATTAGAGC TGAGATGTTT GGGCAGCTCA CTAGCGGATT GGAAAATGCT 30693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGTGGAG TTATTAGAGC TGAGATGTTT GGGCAGCTCA CTAGCGGATT GGAAAATGCT 285 TGGAACAAGC TCAAAGGAGA AGGTAAAAGC AAAAAAAATA CTCTTTTTTA AATTTAAAAA 30633 |||||||||| |||||||||| || TGGAACAAGC TCAAAGGAGA AG........ .......... .......... .......... 307 TGAGCTAGTT TTATGTGAAA ATTTGAAGTA TGGGAGCTTG AATTGTTAAT CTTGAGTAGG 30573 .......... .......... .......... .......... .......... .......... 307 TACATGTTAG AGTGTGTTAG AGTCGCATGT TGGTTGGTTG GGAATGGACC GGTGGTCTGT 30513 .......... .......... .......... .......... .......... .......... 307 TATGTGGACT TGGACGATCC TCTCTTCGTG AGCTAACGTT TTGAGGTTGA GTTAGGCGTA 30453 .......... .......... .......... .......... .......... .......... 307 AGTGTCATAT CTTTATATGC TATCGTAGCT ACTTAGCTAG GTTCATACCT GTTTGGACTC 30393 .......... .......... .......... .......... .......... .......... 307 CCGGTTTATG CTCTAGTTAG GCATGAGGTG TTAAAGTGGG TTATAGTCCC AAATCAGTTT 30333 .......... .......... .......... .......... .......... .......... 307 ATATGGATTG GGTAATCCTT CCGTCGTGAG CTAGTTTTTG GAGTTAGGCC CGGGTGTCAT 30273 .......... .......... .......... .......... .......... .......... 307 ATCTGGACTG TTTTGAAAGG GAACTGAAAA TCGATACCTT GGATAGGGAT GATAGTTCAA 30213 .......... .......... .......... .......... .......... .......... 307 AAATATGACT TCAAGAACAA TGTCTTCTTG TTTTTTCATA TTCAGGATAA TATCTTAAGA 30153 .......... .......... .......... .......... .......... .......... 307 TAATTCATTA GTACATCAGA GGTGTTTATT TGATGTCATC ACAATTTCAG TTAAAGTAAA 30093 .......... .......... .......... .......... .......... .......... 307 TGCCTTTGCT AAGTAAAGGC TGTGAGATAA GATAGGAGTG AACTAAAGCT TCTTCAAAAT 30033 .......... .......... .......... .......... .......... .......... 307 GTGGCATGTA GTCATCCAAG GGTCATATCA ATCTTGGTGA ATGAGTTCAG CAAGACTTAC 29973 .......... .......... .......... .......... .......... .......... 307 AAAAAAAAAT ATAAAAACCT GGAATCGATC CTTAAATAGG AATTAAGTCT CATTTTACAA 29913 .......... .......... .......... .......... .......... .......... 307 GATTTTAACA TGCTGAAATA CAAAATAAAC ACAACCTGGA ATAGATCCTT AATTAGGAAT 29853 .......... .......... .......... .......... .......... .......... 307 TACGTCTCAT ATCCAAGATT TTAACATACA TCAGAGCTGA AAATGTATCA GTGAGGAGTT 29793 .......... .......... .......... .......... .......... .......... 307 CCTTTATGGA TGTTGAGGCT TCGGAGATAG AGTGGGACAG GAAATCCCAG TATTTTATGC 29733 .......... .......... .......... .......... .......... .......... 307 CCAAGCCAAT TGATTCTTGA AGTGGTAAGT AGTTGAGCTA ACCTTCTGCT ATGAGAATGT 29673 .......... .......... .......... .......... .......... .......... 307 TTTAGTGGAA ATGTGGGCTG TCAGGACGGG GTGATGTGGA GATAGAAGCT ATATAAGTTG 29613 .......... .......... .......... .......... .......... .......... 307 GAACATGAAG CTTAATGTCT AGACTTAAAT CCCGCGTGTT TAGAGGATTC AACAACATGA 29553 .......... .......... .......... .......... .......... .......... 307 CTGATTTCAT TTTCAGGGTG GATGATGAGT TGTCGTAGAT GGTAATATTG ATCCATTCGA 29493 .......... .......... .......... .......... .......... .......... 307 GGAGGTGCCA GATGGGGTAT AATGAATTAT ACTTCAAGAG AAGAAACCGG GAAGATGTAT 29433 .......... .......... .......... .......... .......... .......... 307 AATTGATTGT TAAACTCCAA TGAAGTGTAT GGAAAGGGAA GGGGCCTTGC TACTATAAGG 29373 .......... .......... .......... .......... .......... .......... 307 TTTTAAATGC AAAGAGTACA ACATATTAAC AACTATGGCC TATGGGTCAT TGGATTTCTA 29313 .......... .......... .......... .......... .......... .......... 307 TAACAGGGAT ATACTTCTCC TTTTTAGTTC CATACATTAT TGCTGGATAT TATAAAGTTG 29253 .......... .......... .......... .......... .......... .......... 307 TAGGAATAAA TTAATTGGAG AGTATTTTAC TGTTAAAAAT GTGACTTGTC TGCCTTGTCC 29193 .......... .......... .......... .......... .......... .......... 307 AAATTCAAAT TTCTAATCAT ATTTTCTATA TCCTCAATCT TTCAAATTTT AGAGGTTGAA 29133 .......... .......... .......... .......... .......... .......... 307 GTTCTTATTG CCCTTGTTAC TAAATATGTG GTTATATATA ATGATAAAGT GGCTGTTGTT 29073 .......... .......... .......... .......... .......... .......... 307 TGAATTCCTT GTGCCTCAGA GGTTTTGACC AAGGAAAACA TCGTGGAACC TATGAGGGAC 29013 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A GGTTTTGACC AAGGAAAACA TCGTGGAACC TATGAGGGAC 348 ATCAGGAGGG CTCTTTTAGA AGCTGATGTA TGTTGCTTAC TGTTTCAACA ACTAATCTCT 28953 |||||||||| |||||||||| ||||||| ATCAGGAGGG CTCTTTTAGA AGCTGAT... .......... .......... .......... 375 ATACATAAAA TTTCGCCGCT TATTTAACTT TAATCGGCAG GTTAGTCTCC CAGTTGTCAG 28893 |||||||||| |||||||||| .......... .......... .......... .......... GTTAGTCTCC CAGTTGTCAG 395 AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT GGTTTGATTC GAGGTGTAAA 28833 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT GGTTTGATTC GAGGTGTAAA 455 ACCAGATCAG CAACTAGTTA AGGTATGTAT TTTTGAACTG ATGACTCTGA ACAATACACA 28773 |||||||||| |||||||||| || ACCAGATCAG CAACTAGTTA AG........ .......... .......... .......... 477 TTTGTACATT GATAACAGAC GGTCACCCTT CTGTTGTTAA TTGCTTGCAC AATTTGCTAT 28713 .......... .......... .......... .......... .......... .......... 477 CAGCTCGATC TGAACATTTT CTTTGTCTCA TTTGGTTGGT GTAGACTGTA CGTGACGAGC 28653 |||||| |||||||||| .......... .......... .......... .......... ....ACTGTA CGTGACGAGC 493 TTGTGAAACT GATGGGTGGA GAGGTTTCTG AACTGGTTTT TGCTAAATCT 28603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGAAACT GATGGGTGGA GAGGTTTCTG AACTGGTTTT TGCTAAATCT 543 hqPGS_C09HBa0168F14.1-1-_SGN-E267086+ (31052 30876,30800 30671,29053 28986,28912 28811,28668 28603) ******************************************************************************** EST sequence 16 +strand 545 n (File: SGN-E268785+) 1 AAAGCTTCAA TTTTTGCTTC TTCTTTTGAT TGTTTGTTCT TTAATCCTAC CATGGAAGCC 61 ACTGCTTCTT TCACTTCAAC TATGGCTTCT CACCATTTCT TTCCACTTTC TAAAGCCACC 121 CTTTCATCTT CTAAACTTAA TCCCACTTGT AATTCTTCTT CTTCTTGGAT TGGTTCTACT 181 CATTCTCTTT CATTTTCTTC AAGAAATTCA TTTACTAGGG ATACATGGAG GGTGATCAAT 241 TCCAAGAATG TGGTAAGAAG GGAAATGAGT GGAGTTATTA GAGCTGAGAT GTTTGGGCAG 301 CTCACTAGCG GATTGGAAAA TGCTTGGAAC AAGCTCAAAG GAGAAGAGGT TTTGACCAAG 361 GAAAACATCG TGGAACCTAT GAGGGACATC AGGAGGGCTC TTTTAGAAGC TGATGTTAGT 421 CTCCCAGTTG TCAGAAGGTT TGTTCAGTCT GTTAGTGAAG AAGCCGTTGG CACTGGTTTG 481 ATTCGAGGTG TAAAACCAGA TCAGCAACTA GTTAAGACTG TACGTGACGA GCTTGTGAAA 541 CTGAT Predicted gene structure (within gDNA segment 31691 to 28030): Exon 1 31091 30876 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 217 346 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 347 414 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 415 516 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 28668 28640 ( 29 n); cDNA 517 545 ( 29 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E268785+ 1.000 545 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E268785+ (31091 30876,30800 30671,29053 28986,28912 28811,28668 28640) Alignment (genomic DNA sequence = upper lines): AAAGCTTCAA TTTTTGCTTC TTCTTTTGAT TGTTTGTTCT TTAATCCTAC CATGGAAGCC 31032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTTCAA TTTTTGCTTC TTCTTTTGAT TGTTTGTTCT TTAATCCTAC CATGGAAGCC 60 ACTGCTTCTT TCACTTCAAC TATGGCTTCT CACCATTTCT TTCCACTTTC TAAAGCCACC 30972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCTTCTT TCACTTCAAC TATGGCTTCT CACCATTTCT TTCCACTTTC TAAAGCCACC 120 CTTTCATCTT CTAAACTTAA TCCCACTTGT AATTCTTCTT CTTCTTGGAT TGGTTCTACT 30912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCATCTT CTAAACTTAA TCCCACTTGT AATTCTTCTT CTTCTTGGAT TGGTTCTACT 180 CATTCTCTTT CATTTTCTTC AAGAAATTCA TTTACTGTAA GACCCTTTTG GATTTTGGTT 30852 |||||||||| |||||||||| |||||||||| |||||| CATTCTCTTT CATTTTCTTC AAGAAATTCA TTTACT.... .......... .......... 216 AGTTTTTTTT TTTTTTTGTA GTTTTTGGTT AAAGATTGAA TTTTTATGTA GAGGGATACA 30792 ||||||||| .......... .......... .......... .......... .......... .AGGGATACA 225 TGGAGGGTGA TCAATTCCAA GAATGTGGTA AGAAGGGAAA TGAGTGGAGT TATTAGAGCT 30732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGGTGA TCAATTCCAA GAATGTGGTA AGAAGGGAAA TGAGTGGAGT TATTAGAGCT 285 GAGATGTTTG GGCAGCTCAC TAGCGGATTG GAAAATGCTT GGAACAAGCT CAAAGGAGAA 30672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGTTTG GGCAGCTCAC TAGCGGATTG GAAAATGCTT GGAACAAGCT CAAAGGAGAA 345 GGTAAAAGCA AAAAAAATAC TCTTTTTTAA ATTTAAAAAT GAGCTAGTTT TATGTGAAAA 30612 | G......... .......... .......... .......... .......... .......... 346 TTTGAAGTAT GGGAGCTTGA ATTGTTAATC TTGAGTAGGT ACATGTTAGA GTGTGTTAGA 30552 .......... .......... .......... .......... .......... .......... 346 GTCGCATGTT GGTTGGTTGG GAATGGACCG GTGGTCTGTT ATGTGGACTT GGACGATCCT 30492 .......... .......... .......... .......... .......... .......... 346 CTCTTCGTGA GCTAACGTTT TGAGGTTGAG TTAGGCGTAA GTGTCATATC TTTATATGCT 30432 .......... .......... .......... .......... .......... .......... 346 ATCGTAGCTA CTTAGCTAGG TTCATACCTG TTTGGACTCC CGGTTTATGC TCTAGTTAGG 30372 .......... .......... .......... .......... .......... .......... 346 CATGAGGTGT TAAAGTGGGT TATAGTCCCA AATCAGTTTA TATGGATTGG GTAATCCTTC 30312 .......... .......... .......... .......... .......... .......... 346 CGTCGTGAGC TAGTTTTTGG AGTTAGGCCC GGGTGTCATA TCTGGACTGT TTTGAAAGGG 30252 .......... .......... .......... .......... .......... .......... 346 AACTGAAAAT CGATACCTTG GATAGGGATG ATAGTTCAAA AATATGACTT CAAGAACAAT 30192 .......... .......... .......... .......... .......... .......... 346 GTCTTCTTGT TTTTTCATAT TCAGGATAAT ATCTTAAGAT AATTCATTAG TACATCAGAG 30132 .......... .......... .......... .......... .......... .......... 346 GTGTTTATTT GATGTCATCA CAATTTCAGT TAAAGTAAAT GCCTTTGCTA AGTAAAGGCT 30072 .......... .......... .......... .......... .......... .......... 346 GTGAGATAAG ATAGGAGTGA ACTAAAGCTT CTTCAAAATG TGGCATGTAG TCATCCAAGG 30012 .......... .......... .......... .......... .......... .......... 346 GTCATATCAA TCTTGGTGAA TGAGTTCAGC AAGACTTACA AAAAAAAATA TAAAAACCTG 29952 .......... .......... .......... .......... .......... .......... 346 GAATCGATCC TTAAATAGGA ATTAAGTCTC ATTTTACAAG ATTTTAACAT GCTGAAATAC 29892 .......... .......... .......... .......... .......... .......... 346 AAAATAAACA CAACCTGGAA TAGATCCTTA ATTAGGAATT ACGTCTCATA TCCAAGATTT 29832 .......... .......... .......... .......... .......... .......... 346 TAACATACAT CAGAGCTGAA AATGTATCAG TGAGGAGTTC CTTTATGGAT GTTGAGGCTT 29772 .......... .......... .......... .......... .......... .......... 346 CGGAGATAGA GTGGGACAGG AAATCCCAGT ATTTTATGCC CAAGCCAATT GATTCTTGAA 29712 .......... .......... .......... .......... .......... .......... 346 GTGGTAAGTA GTTGAGCTAA CCTTCTGCTA TGAGAATGTT TTAGTGGAAA TGTGGGCTGT 29652 .......... .......... .......... .......... .......... .......... 346 CAGGACGGGG TGATGTGGAG ATAGAAGCTA TATAAGTTGG AACATGAAGC TTAATGTCTA 29592 .......... .......... .......... .......... .......... .......... 346 GACTTAAATC CCGCGTGTTT AGAGGATTCA ACAACATGAC TGATTTCATT TTCAGGGTGG 29532 .......... .......... .......... .......... .......... .......... 346 ATGATGAGTT GTCGTAGATG GTAATATTGA TCCATTCGAG GAGGTGCCAG ATGGGGTATA 29472 .......... .......... .......... .......... .......... .......... 346 ATGAATTATA CTTCAAGAGA AGAAACCGGG AAGATGTATA ATTGATTGTT AAACTCCAAT 29412 .......... .......... .......... .......... .......... .......... 346 GAAGTGTATG GAAAGGGAAG GGGCCTTGCT ACTATAAGGT TTTAAATGCA AAGAGTACAA 29352 .......... .......... .......... .......... .......... .......... 346 CATATTAACA ACTATGGCCT ATGGGTCATT GGATTTCTAT AACAGGGATA TACTTCTCCT 29292 .......... .......... .......... .......... .......... .......... 346 TTTTAGTTCC ATACATTATT GCTGGATATT ATAAAGTTGT AGGAATAAAT TAATTGGAGA 29232 .......... .......... .......... .......... .......... .......... 346 GTATTTTACT GTTAAAAATG TGACTTGTCT GCCTTGTCCA AATTCAAATT TCTAATCATA 29172 .......... .......... .......... .......... .......... .......... 346 TTTTCTATAT CCTCAATCTT TCAAATTTTA GAGGTTGAAG TTCTTATTGC CCTTGTTACT 29112 .......... .......... .......... .......... .......... .......... 346 AAATATGTGG TTATATATAA TGATAAAGTG GCTGTTGTTT GAATTCCTTG TGCCTCAGAG 29052 || .......... .......... .......... .......... .......... ........AG 348 GTTTTGACCA AGGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC TCTTTTAGAA 28992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGACCA AGGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC TCTTTTAGAA 408 GCTGATGTAT GTTGCTTACT GTTTCAACAA CTAATCTCTA TACATAAAAT TTCGCCGCTT 28932 |||||| GCTGAT.... .......... .......... .......... .......... .......... 414 ATTTAACTTT AATCGGCAGG TTAGTCTCCC AGTTGTCAGA AGGTTTGTTC AGTCTGTTAG 28872 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TTAGTCTCCC AGTTGTCAGA AGGTTTGTTC AGTCTGTTAG 455 TGAAGAAGCC GTTGGCACTG GTTTGATTCG AGGTGTAAAA CCAGATCAGC AACTAGTTAA 28812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAGCC GTTGGCACTG GTTTGATTCG AGGTGTAAAA CCAGATCAGC AACTAGTTAA 515 GGTATGTATT TTTGAACTGA TGACTCTGAA CAATACACAT TTGTACATTG ATAACAGACG 28752 | G......... .......... .......... .......... .......... .......... 516 GTCACCCTTC TGTTGTTAAT TGCTTGCACA ATTTGCTATC AGCTCGATCT GAACATTTTC 28692 .......... .......... .......... .......... .......... .......... 516 TTTGTCTCAT TTGGTTGGTG TAGACTGTAC GTGACGAGCT TGTGAAACTG AT 28640 ||||||| |||||||||| |||||||||| || .......... .......... ...ACTGTAC GTGACGAGCT TGTGAAACTG AT 545 hqPGS_C09HBa0168F14.1-1-_SGN-E268785+ (31091 30876,30800 30671,29053 28986,28912 28811,28668 28640) ******************************************************************************** EST sequence 47 +strand 545 n (File: SGN-E266144+) 1 AAAGCTTCAA TTTTTGCTTC TTCTTTTGAT TGTTTGTTCT TTAATCCTAC CATGGAAGCC 61 ACTGCTTCTT TCACTTCAAC TATGGCTTCT CACCATTTCT TTCCACTTTC TAAAGCCACC 121 CTTTCATCTT CTAAACTTAA TCCCACTTGT AATTCTTCTT CTTCTTGGAT TGGTTCTACT 181 CATTCTCTTT CATTTTCTTC AAGAAATTCA TTTACTAGGG ATACATGGAG GGTGATCAAT 241 TCCAAGAATG TGGTAAGAAG GGAAATGAGT GGAGTTATTA GAGCTGAGAT GTTTGGGCAG 301 CTCACTAGCG GATTGGAAAA TGCTTGGAAC AAGCTCAAAG GAGAAGAGGT TTTGACCAAG 361 GAAAACATCG TGGAACCTAT GAGGGACATC AGGAGGGCTC TTTTAGAAGC TGATGTTAGT 421 CTCCCAGTTG TCAGAAGGTT TGTTCAGTCT GTTAGTGAAG AAGCCGTTGG CACTGGTTTG 481 ATTCGAGGTG TAAAACCAGA TCAGCAACTA GTTAAGACTG TACGTGACGA GCTTGTGAAA 541 CTGAT Predicted gene structure (within gDNA segment 31691 to 28030): Exon 1 31091 30876 ( 216 n); cDNA 1 216 ( 216 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 217 346 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 347 414 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28811 ( 102 n); cDNA 415 516 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 28668 28640 ( 29 n); cDNA 517 545 ( 29 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E266144+ 1.000 545 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E266144+ (31091 30876,30800 30671,29053 28986,28912 28811,28668 28640) Alignment (genomic DNA sequence = upper lines): AAAGCTTCAA TTTTTGCTTC TTCTTTTGAT TGTTTGTTCT TTAATCCTAC CATGGAAGCC 31032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTTCAA TTTTTGCTTC TTCTTTTGAT TGTTTGTTCT TTAATCCTAC CATGGAAGCC 60 ACTGCTTCTT TCACTTCAAC TATGGCTTCT CACCATTTCT TTCCACTTTC TAAAGCCACC 30972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCTTCTT TCACTTCAAC TATGGCTTCT CACCATTTCT TTCCACTTTC TAAAGCCACC 120 CTTTCATCTT CTAAACTTAA TCCCACTTGT AATTCTTCTT CTTCTTGGAT TGGTTCTACT 30912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCATCTT CTAAACTTAA TCCCACTTGT AATTCTTCTT CTTCTTGGAT TGGTTCTACT 180 CATTCTCTTT CATTTTCTTC AAGAAATTCA TTTACTGTAA GACCCTTTTG GATTTTGGTT 30852 |||||||||| |||||||||| |||||||||| |||||| CATTCTCTTT CATTTTCTTC AAGAAATTCA TTTACT.... .......... .......... 216 AGTTTTTTTT TTTTTTTGTA GTTTTTGGTT AAAGATTGAA TTTTTATGTA GAGGGATACA 30792 ||||||||| .......... .......... .......... .......... .......... .AGGGATACA 225 TGGAGGGTGA TCAATTCCAA GAATGTGGTA AGAAGGGAAA TGAGTGGAGT TATTAGAGCT 30732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGGTGA TCAATTCCAA GAATGTGGTA AGAAGGGAAA TGAGTGGAGT TATTAGAGCT 285 GAGATGTTTG GGCAGCTCAC TAGCGGATTG GAAAATGCTT GGAACAAGCT CAAAGGAGAA 30672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGATGTTTG GGCAGCTCAC TAGCGGATTG GAAAATGCTT GGAACAAGCT CAAAGGAGAA 345 GGTAAAAGCA AAAAAAATAC TCTTTTTTAA ATTTAAAAAT GAGCTAGTTT TATGTGAAAA 30612 | G......... .......... .......... .......... .......... .......... 346 TTTGAAGTAT GGGAGCTTGA ATTGTTAATC TTGAGTAGGT ACATGTTAGA GTGTGTTAGA 30552 .......... .......... .......... .......... .......... .......... 346 GTCGCATGTT GGTTGGTTGG GAATGGACCG GTGGTCTGTT ATGTGGACTT GGACGATCCT 30492 .......... .......... .......... .......... .......... .......... 346 CTCTTCGTGA GCTAACGTTT TGAGGTTGAG TTAGGCGTAA GTGTCATATC TTTATATGCT 30432 .......... .......... .......... .......... .......... .......... 346 ATCGTAGCTA CTTAGCTAGG TTCATACCTG TTTGGACTCC CGGTTTATGC TCTAGTTAGG 30372 .......... .......... .......... .......... .......... .......... 346 CATGAGGTGT TAAAGTGGGT TATAGTCCCA AATCAGTTTA TATGGATTGG GTAATCCTTC 30312 .......... .......... .......... .......... .......... .......... 346 CGTCGTGAGC TAGTTTTTGG AGTTAGGCCC GGGTGTCATA TCTGGACTGT TTTGAAAGGG 30252 .......... .......... .......... .......... .......... .......... 346 AACTGAAAAT CGATACCTTG GATAGGGATG ATAGTTCAAA AATATGACTT CAAGAACAAT 30192 .......... .......... .......... .......... .......... .......... 346 GTCTTCTTGT TTTTTCATAT TCAGGATAAT ATCTTAAGAT AATTCATTAG TACATCAGAG 30132 .......... .......... .......... .......... .......... .......... 346 GTGTTTATTT GATGTCATCA CAATTTCAGT TAAAGTAAAT GCCTTTGCTA AGTAAAGGCT 30072 .......... .......... .......... .......... .......... .......... 346 GTGAGATAAG ATAGGAGTGA ACTAAAGCTT CTTCAAAATG TGGCATGTAG TCATCCAAGG 30012 .......... .......... .......... .......... .......... .......... 346 GTCATATCAA TCTTGGTGAA TGAGTTCAGC AAGACTTACA AAAAAAAATA TAAAAACCTG 29952 .......... .......... .......... .......... .......... .......... 346 GAATCGATCC TTAAATAGGA ATTAAGTCTC ATTTTACAAG ATTTTAACAT GCTGAAATAC 29892 .......... .......... .......... .......... .......... .......... 346 AAAATAAACA CAACCTGGAA TAGATCCTTA ATTAGGAATT ACGTCTCATA TCCAAGATTT 29832 .......... .......... .......... .......... .......... .......... 346 TAACATACAT CAGAGCTGAA AATGTATCAG TGAGGAGTTC CTTTATGGAT GTTGAGGCTT 29772 .......... .......... .......... .......... .......... .......... 346 CGGAGATAGA GTGGGACAGG AAATCCCAGT ATTTTATGCC CAAGCCAATT GATTCTTGAA 29712 .......... .......... .......... .......... .......... .......... 346 GTGGTAAGTA GTTGAGCTAA CCTTCTGCTA TGAGAATGTT TTAGTGGAAA TGTGGGCTGT 29652 .......... .......... .......... .......... .......... .......... 346 CAGGACGGGG TGATGTGGAG ATAGAAGCTA TATAAGTTGG AACATGAAGC TTAATGTCTA 29592 .......... .......... .......... .......... .......... .......... 346 GACTTAAATC CCGCGTGTTT AGAGGATTCA ACAACATGAC TGATTTCATT TTCAGGGTGG 29532 .......... .......... .......... .......... .......... .......... 346 ATGATGAGTT GTCGTAGATG GTAATATTGA TCCATTCGAG GAGGTGCCAG ATGGGGTATA 29472 .......... .......... .......... .......... .......... .......... 346 ATGAATTATA CTTCAAGAGA AGAAACCGGG AAGATGTATA ATTGATTGTT AAACTCCAAT 29412 .......... .......... .......... .......... .......... .......... 346 GAAGTGTATG GAAAGGGAAG GGGCCTTGCT ACTATAAGGT TTTAAATGCA AAGAGTACAA 29352 .......... .......... .......... .......... .......... .......... 346 CATATTAACA ACTATGGCCT ATGGGTCATT GGATTTCTAT AACAGGGATA TACTTCTCCT 29292 .......... .......... .......... .......... .......... .......... 346 TTTTAGTTCC ATACATTATT GCTGGATATT ATAAAGTTGT AGGAATAAAT TAATTGGAGA 29232 .......... .......... .......... .......... .......... .......... 346 GTATTTTACT GTTAAAAATG TGACTTGTCT GCCTTGTCCA AATTCAAATT TCTAATCATA 29172 .......... .......... .......... .......... .......... .......... 346 TTTTCTATAT CCTCAATCTT TCAAATTTTA GAGGTTGAAG TTCTTATTGC CCTTGTTACT 29112 .......... .......... .......... .......... .......... .......... 346 AAATATGTGG TTATATATAA TGATAAAGTG GCTGTTGTTT GAATTCCTTG TGCCTCAGAG 29052 || .......... .......... .......... .......... .......... ........AG 348 GTTTTGACCA AGGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC TCTTTTAGAA 28992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTGACCA AGGAAAACAT CGTGGAACCT ATGAGGGACA TCAGGAGGGC TCTTTTAGAA 408 GCTGATGTAT GTTGCTTACT GTTTCAACAA CTAATCTCTA TACATAAAAT TTCGCCGCTT 28932 |||||| GCTGAT.... .......... .......... .......... .......... .......... 414 ATTTAACTTT AATCGGCAGG TTAGTCTCCC AGTTGTCAGA AGGTTTGTTC AGTCTGTTAG 28872 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TTAGTCTCCC AGTTGTCAGA AGGTTTGTTC AGTCTGTTAG 455 TGAAGAAGCC GTTGGCACTG GTTTGATTCG AGGTGTAAAA CCAGATCAGC AACTAGTTAA 28812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAGCC GTTGGCACTG GTTTGATTCG AGGTGTAAAA CCAGATCAGC AACTAGTTAA 515 GGTATGTATT TTTGAACTGA TGACTCTGAA CAATACACAT TTGTACATTG ATAACAGACG 28752 | G......... .......... .......... .......... .......... .......... 516 GTCACCCTTC TGTTGTTAAT TGCTTGCACA ATTTGCTATC AGCTCGATCT GAACATTTTC 28692 .......... .......... .......... .......... .......... .......... 516 TTTGTCTCAT TTGGTTGGTG TAGACTGTAC GTGACGAGCT TGTGAAACTG AT 28640 ||||||| |||||||||| |||||||||| || .......... .......... ...ACTGTAC GTGACGAGCT TGTGAAACTG AT 545 hqPGS_C09HBa0168F14.1-1-_SGN-E266144+ (31091 30876,30800 30671,29053 28986,28912 28811,28668 28640) ******************************************************************************** EST sequence 30 +strand 488 n (File: SGN-E318539+) 1 AAGAAAAAAG CTTCAATTTT TGCTTCTTCT TTTGATTGTT TGTTCTTTAA TCCTACCATG 61 GAAGCCACTG CTTCTTTCAC TTCAACTATG GCTTCTCACC ATTTCTTTCC ACTTTCTAAA 121 GCCACCCTTT CATCTTCTAA ACTTAATCCC ACTTGTAATT CTTCTTCTTC TTGGATTGGT 181 TCTACTCATT CTCTTTCATT TTCTTCAAGA AATTCATTTA CTAGGGATAC ATGGAGGGTG 241 ATCAATTCCA AGAATGTGGT AAGAAGGGAA ATGAGTGGAG TTATTAGAGC TGAGATGTTT 301 GGGCAGCTCA CTAGCGGATT GGAAAATGCT TGGAACAAGC TCAAAGGAGA AGAGGTTTTG 361 ACCAAGGAAA ACATCGTGGA ACCTATGAGG GACATCAGGA GGGCTCTTTT AGAAGCTGAT 421 GTTAGTCTCC CAGTTGTCAG AAGGTTTGTT CAGTCTGTTA GTGAAGAAGC CGTTGGCACT 481 GGTTTGAT Predicted gene structure (within gDNA segment 31697 to 28235): Exon 1 31097 30876 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 223 352 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 353 420 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 1.00) Exon 4 28912 28845 ( 68 n); cDNA 421 488 ( 68 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E318539+ 1.000 488 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E318539+ (31097 30876,30800 30671,29053 28986,28912 28845) Alignment (genomic DNA sequence = upper lines): AAGAAAAAAG CTTCAATTTT TGCTTCTTCT TTTGATTGTT TGTTCTTTAA TCCTACCATG 31038 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAAAAG CTTCAATTTT TGCTTCTTCT TTTGATTGTT TGTTCTTTAA TCCTACCATG 60 GAAGCCACTG CTTCTTTCAC TTCAACTATG GCTTCTCACC ATTTCTTTCC ACTTTCTAAA 30978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCCACTG CTTCTTTCAC TTCAACTATG GCTTCTCACC ATTTCTTTCC ACTTTCTAAA 120 GCCACCCTTT CATCTTCTAA ACTTAATCCC ACTTGTAATT CTTCTTCTTC TTGGATTGGT 30918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACCCTTT CATCTTCTAA ACTTAATCCC ACTTGTAATT CTTCTTCTTC TTGGATTGGT 180 TCTACTCATT CTCTTTCATT TTCTTCAAGA AATTCATTTA CTGTAAGACC CTTTTGGATT 30858 |||||||||| |||||||||| |||||||||| |||||||||| || TCTACTCATT CTCTTTCATT TTCTTCAAGA AATTCATTTA CT........ .......... 222 TTGGTTAGTT TTTTTTTTTT TTTGTAGTTT TTGGTTAAAG ATTGAATTTT TATGTAGAGG 30798 ||| .......... .......... .......... .......... .......... .......AGG 225 GATACATGGA GGGTGATCAA TTCCAAGAAT GTGGTAAGAA GGGAAATGAG TGGAGTTATT 30738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACATGGA GGGTGATCAA TTCCAAGAAT GTGGTAAGAA GGGAAATGAG TGGAGTTATT 285 AGAGCTGAGA TGTTTGGGCA GCTCACTAGC GGATTGGAAA ATGCTTGGAA CAAGCTCAAA 30678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCTGAGA TGTTTGGGCA GCTCACTAGC GGATTGGAAA ATGCTTGGAA CAAGCTCAAA 345 GGAGAAGGTA AAAGCAAAAA AAATACTCTT TTTTAAATTT AAAAATGAGC TAGTTTTATG 30618 ||||||| GGAGAAG... .......... .......... .......... .......... .......... 352 TGAAAATTTG AAGTATGGGA GCTTGAATTG TTAATCTTGA GTAGGTACAT GTTAGAGTGT 30558 .......... .......... .......... .......... .......... .......... 352 GTTAGAGTCG CATGTTGGTT GGTTGGGAAT GGACCGGTGG TCTGTTATGT GGACTTGGAC 30498 .......... .......... .......... .......... .......... .......... 352 GATCCTCTCT TCGTGAGCTA ACGTTTTGAG GTTGAGTTAG GCGTAAGTGT CATATCTTTA 30438 .......... .......... .......... .......... .......... .......... 352 TATGCTATCG TAGCTACTTA GCTAGGTTCA TACCTGTTTG GACTCCCGGT TTATGCTCTA 30378 .......... .......... .......... .......... .......... .......... 352 GTTAGGCATG AGGTGTTAAA GTGGGTTATA GTCCCAAATC AGTTTATATG GATTGGGTAA 30318 .......... .......... .......... .......... .......... .......... 352 TCCTTCCGTC GTGAGCTAGT TTTTGGAGTT AGGCCCGGGT GTCATATCTG GACTGTTTTG 30258 .......... .......... .......... .......... .......... .......... 352 AAAGGGAACT GAAAATCGAT ACCTTGGATA GGGATGATAG TTCAAAAATA TGACTTCAAG 30198 .......... .......... .......... .......... .......... .......... 352 AACAATGTCT TCTTGTTTTT TCATATTCAG GATAATATCT TAAGATAATT CATTAGTACA 30138 .......... .......... .......... .......... .......... .......... 352 TCAGAGGTGT TTATTTGATG TCATCACAAT TTCAGTTAAA GTAAATGCCT TTGCTAAGTA 30078 .......... .......... .......... .......... .......... .......... 352 AAGGCTGTGA GATAAGATAG GAGTGAACTA AAGCTTCTTC AAAATGTGGC ATGTAGTCAT 30018 .......... .......... .......... .......... .......... .......... 352 CCAAGGGTCA TATCAATCTT GGTGAATGAG TTCAGCAAGA CTTACAAAAA AAAATATAAA 29958 .......... .......... .......... .......... .......... .......... 352 AACCTGGAAT CGATCCTTAA ATAGGAATTA AGTCTCATTT TACAAGATTT TAACATGCTG 29898 .......... .......... .......... .......... .......... .......... 352 AAATACAAAA TAAACACAAC CTGGAATAGA TCCTTAATTA GGAATTACGT CTCATATCCA 29838 .......... .......... .......... .......... .......... .......... 352 AGATTTTAAC ATACATCAGA GCTGAAAATG TATCAGTGAG GAGTTCCTTT ATGGATGTTG 29778 .......... .......... .......... .......... .......... .......... 352 AGGCTTCGGA GATAGAGTGG GACAGGAAAT CCCAGTATTT TATGCCCAAG CCAATTGATT 29718 .......... .......... .......... .......... .......... .......... 352 CTTGAAGTGG TAAGTAGTTG AGCTAACCTT CTGCTATGAG AATGTTTTAG TGGAAATGTG 29658 .......... .......... .......... .......... .......... .......... 352 GGCTGTCAGG ACGGGGTGAT GTGGAGATAG AAGCTATATA AGTTGGAACA TGAAGCTTAA 29598 .......... .......... .......... .......... .......... .......... 352 TGTCTAGACT TAAATCCCGC GTGTTTAGAG GATTCAACAA CATGACTGAT TTCATTTTCA 29538 .......... .......... .......... .......... .......... .......... 352 GGGTGGATGA TGAGTTGTCG TAGATGGTAA TATTGATCCA TTCGAGGAGG TGCCAGATGG 29478 .......... .......... .......... .......... .......... .......... 352 GGTATAATGA ATTATACTTC AAGAGAAGAA ACCGGGAAGA TGTATAATTG ATTGTTAAAC 29418 .......... .......... .......... .......... .......... .......... 352 TCCAATGAAG TGTATGGAAA GGGAAGGGGC CTTGCTACTA TAAGGTTTTA AATGCAAAGA 29358 .......... .......... .......... .......... .......... .......... 352 GTACAACATA TTAACAACTA TGGCCTATGG GTCATTGGAT TTCTATAACA GGGATATACT 29298 .......... .......... .......... .......... .......... .......... 352 TCTCCTTTTT AGTTCCATAC ATTATTGCTG GATATTATAA AGTTGTAGGA ATAAATTAAT 29238 .......... .......... .......... .......... .......... .......... 352 TGGAGAGTAT TTTACTGTTA AAAATGTGAC TTGTCTGCCT TGTCCAAATT CAAATTTCTA 29178 .......... .......... .......... .......... .......... .......... 352 ATCATATTTT CTATATCCTC AATCTTTCAA ATTTTAGAGG TTGAAGTTCT TATTGCCCTT 29118 .......... .......... .......... .......... .......... .......... 352 GTTACTAAAT ATGTGGTTAT ATATAATGAT AAAGTGGCTG TTGTTTGAAT TCCTTGTGCC 29058 .......... .......... .......... .......... .......... .......... 352 TCAGAGGTTT TGACCAAGGA AAACATCGTG GAACCTATGA GGGACATCAG GAGGGCTCTT 28998 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....AGGTTT TGACCAAGGA AAACATCGTG GAACCTATGA GGGACATCAG GAGGGCTCTT 408 TTAGAAGCTG ATGTATGTTG CTTACTGTTT CAACAACTAA TCTCTATACA TAAAATTTCG 28938 |||||||||| || TTAGAAGCTG AT........ .......... .......... .......... .......... 420 CCGCTTATTT AACTTTAATC GGCAGGTTAG TCTCCCAGTT GTCAGAAGGT TTGTTCAGTC 28878 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTAG TCTCCCAGTT GTCAGAAGGT TTGTTCAGTC 455 TGTTAGTGAA GAAGCCGTTG GCACTGGTTT GAT 28845 |||||||||| |||||||||| |||||||||| ||| TGTTAGTGAA GAAGCCGTTG GCACTGGTTT GAT 488 hqPGS_C09HBa0168F14.1-1-_SGN-E318539+ (31097 30876,30800 30671,29053 28986,28912 28845) ******************************************************************************** EST sequence 18 +strand 441 n (File: SGN-E295369+) 1 AAGAAAAAAG CTTCAATTTT TGCTTCTTCT TTTGATTGTT TGGTCTTTAA TCCTACCATG 61 GAAGCCACTG CTTCTTTCAC TTCAACTATG GCTTCTCACC ATTTCTTTCC ACTTTCTAAA 121 GCCACCCTTT CATCTTCTAA ACTTAATCCC ACTTGTAATT CTTCTTCTTC TTGGATTGGT 181 TCTACTCATT CTCTTTCATT TTCTTCAAGA AATTCATTTA CTAGGGATAC ATGGAGGGTG 241 ATCAATTCCA AGAATGTGGT AAGAAGGGAA ATGAGTGGAG TTATTAGAGC TGAGATGTTT 301 GGGCAGCTCA CTAGCGGATT GGAAAATGCT TGGAACAAGC TCAAAGGAGA AGAGGTTTTG 361 ACCAAGGAAA ACATCGTGGA ACCTATGAGG GACATCAGGA GGGCTCTTTT AGAAGCTGAT 421 GTTAGTCTCC CAGTTGTCAG A Predicted gene structure (within gDNA segment 31697 to 28184): Exon 1 31097 30876 ( 222 n); cDNA 1 222 ( 222 n); score: 0.995 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30671 ( 130 n); cDNA 223 352 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 (s: 1.00), Pa: 0.977 (s: 1.00) Exon 3 29053 28986 ( 68 n); cDNA 353 420 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 (s: 1.00), Pa: 0.920 (s: 0) Exon 4 28912 28892 ( 21 n); cDNA 421 441 ( 21 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E295369+ 0.998 441 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E295369+ (31097 30876,30800 30671,29053 28986,28912 28892) Alignment (genomic DNA sequence = upper lines): AAGAAAAAAG CTTCAATTTT TGCTTCTTCT TTTGATTGTT TGTTCTTTAA TCCTACCATG 31038 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| AAGAAAAAAG CTTCAATTTT TGCTTCTTCT TTTGATTGTT TGGTCTTTAA TCCTACCATG 60 GAAGCCACTG CTTCTTTCAC TTCAACTATG GCTTCTCACC ATTTCTTTCC ACTTTCTAAA 30978 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCCACTG CTTCTTTCAC TTCAACTATG GCTTCTCACC ATTTCTTTCC ACTTTCTAAA 120 GCCACCCTTT CATCTTCTAA ACTTAATCCC ACTTGTAATT CTTCTTCTTC TTGGATTGGT 30918 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCACCCTTT CATCTTCTAA ACTTAATCCC ACTTGTAATT CTTCTTCTTC TTGGATTGGT 180 TCTACTCATT CTCTTTCATT TTCTTCAAGA AATTCATTTA CTGTAAGACC CTTTTGGATT 30858 |||||||||| |||||||||| |||||||||| |||||||||| || TCTACTCATT CTCTTTCATT TTCTTCAAGA AATTCATTTA CT........ .......... 222 TTGGTTAGTT TTTTTTTTTT TTTGTAGTTT TTGGTTAAAG ATTGAATTTT TATGTAGAGG 30798 ||| .......... .......... .......... .......... .......... .......AGG 225 GATACATGGA GGGTGATCAA TTCCAAGAAT GTGGTAAGAA GGGAAATGAG TGGAGTTATT 30738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACATGGA GGGTGATCAA TTCCAAGAAT GTGGTAAGAA GGGAAATGAG TGGAGTTATT 285 AGAGCTGAGA TGTTTGGGCA GCTCACTAGC GGATTGGAAA ATGCTTGGAA CAAGCTCAAA 30678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCTGAGA TGTTTGGGCA GCTCACTAGC GGATTGGAAA ATGCTTGGAA CAAGCTCAAA 345 GGAGAAGGTA AAAGCAAAAA AAATACTCTT TTTTAAATTT AAAAATGAGC TAGTTTTATG 30618 ||||||| GGAGAAG... .......... .......... .......... .......... .......... 352 TGAAAATTTG AAGTATGGGA GCTTGAATTG TTAATCTTGA GTAGGTACAT GTTAGAGTGT 30558 .......... .......... .......... .......... .......... .......... 352 GTTAGAGTCG CATGTTGGTT GGTTGGGAAT GGACCGGTGG TCTGTTATGT GGACTTGGAC 30498 .......... .......... .......... .......... .......... .......... 352 GATCCTCTCT TCGTGAGCTA ACGTTTTGAG GTTGAGTTAG GCGTAAGTGT CATATCTTTA 30438 .......... .......... .......... .......... .......... .......... 352 TATGCTATCG TAGCTACTTA GCTAGGTTCA TACCTGTTTG GACTCCCGGT TTATGCTCTA 30378 .......... .......... .......... .......... .......... .......... 352 GTTAGGCATG AGGTGTTAAA GTGGGTTATA GTCCCAAATC AGTTTATATG GATTGGGTAA 30318 .......... .......... .......... .......... .......... .......... 352 TCCTTCCGTC GTGAGCTAGT TTTTGGAGTT AGGCCCGGGT GTCATATCTG GACTGTTTTG 30258 .......... .......... .......... .......... .......... .......... 352 AAAGGGAACT GAAAATCGAT ACCTTGGATA GGGATGATAG TTCAAAAATA TGACTTCAAG 30198 .......... .......... .......... .......... .......... .......... 352 AACAATGTCT TCTTGTTTTT TCATATTCAG GATAATATCT TAAGATAATT CATTAGTACA 30138 .......... .......... .......... .......... .......... .......... 352 TCAGAGGTGT TTATTTGATG TCATCACAAT TTCAGTTAAA GTAAATGCCT TTGCTAAGTA 30078 .......... .......... .......... .......... .......... .......... 352 AAGGCTGTGA GATAAGATAG GAGTGAACTA AAGCTTCTTC AAAATGTGGC ATGTAGTCAT 30018 .......... .......... .......... .......... .......... .......... 352 CCAAGGGTCA TATCAATCTT GGTGAATGAG TTCAGCAAGA CTTACAAAAA AAAATATAAA 29958 .......... .......... .......... .......... .......... .......... 352 AACCTGGAAT CGATCCTTAA ATAGGAATTA AGTCTCATTT TACAAGATTT TAACATGCTG 29898 .......... .......... .......... .......... .......... .......... 352 AAATACAAAA TAAACACAAC CTGGAATAGA TCCTTAATTA GGAATTACGT CTCATATCCA 29838 .......... .......... .......... .......... .......... .......... 352 AGATTTTAAC ATACATCAGA GCTGAAAATG TATCAGTGAG GAGTTCCTTT ATGGATGTTG 29778 .......... .......... .......... .......... .......... .......... 352 AGGCTTCGGA GATAGAGTGG GACAGGAAAT CCCAGTATTT TATGCCCAAG CCAATTGATT 29718 .......... .......... .......... .......... .......... .......... 352 CTTGAAGTGG TAAGTAGTTG AGCTAACCTT CTGCTATGAG AATGTTTTAG TGGAAATGTG 29658 .......... .......... .......... .......... .......... .......... 352 GGCTGTCAGG ACGGGGTGAT GTGGAGATAG AAGCTATATA AGTTGGAACA TGAAGCTTAA 29598 .......... .......... .......... .......... .......... .......... 352 TGTCTAGACT TAAATCCCGC GTGTTTAGAG GATTCAACAA CATGACTGAT TTCATTTTCA 29538 .......... .......... .......... .......... .......... .......... 352 GGGTGGATGA TGAGTTGTCG TAGATGGTAA TATTGATCCA TTCGAGGAGG TGCCAGATGG 29478 .......... .......... .......... .......... .......... .......... 352 GGTATAATGA ATTATACTTC AAGAGAAGAA ACCGGGAAGA TGTATAATTG ATTGTTAAAC 29418 .......... .......... .......... .......... .......... .......... 352 TCCAATGAAG TGTATGGAAA GGGAAGGGGC CTTGCTACTA TAAGGTTTTA AATGCAAAGA 29358 .......... .......... .......... .......... .......... .......... 352 GTACAACATA TTAACAACTA TGGCCTATGG GTCATTGGAT TTCTATAACA GGGATATACT 29298 .......... .......... .......... .......... .......... .......... 352 TCTCCTTTTT AGTTCCATAC ATTATTGCTG GATATTATAA AGTTGTAGGA ATAAATTAAT 29238 .......... .......... .......... .......... .......... .......... 352 TGGAGAGTAT TTTACTGTTA AAAATGTGAC TTGTCTGCCT TGTCCAAATT CAAATTTCTA 29178 .......... .......... .......... .......... .......... .......... 352 ATCATATTTT CTATATCCTC AATCTTTCAA ATTTTAGAGG TTGAAGTTCT TATTGCCCTT 29118 .......... .......... .......... .......... .......... .......... 352 GTTACTAAAT ATGTGGTTAT ATATAATGAT AAAGTGGCTG TTGTTTGAAT TCCTTGTGCC 29058 .......... .......... .......... .......... .......... .......... 352 TCAGAGGTTT TGACCAAGGA AAACATCGTG GAACCTATGA GGGACATCAG GAGGGCTCTT 28998 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....AGGTTT TGACCAAGGA AAACATCGTG GAACCTATGA GGGACATCAG GAGGGCTCTT 408 TTAGAAGCTG ATGTATGTTG CTTACTGTTT CAACAACTAA TCTCTATACA TAAAATTTCG 28938 |||||||||| || TTAGAAGCTG AT........ .......... .......... .......... .......... 420 CCGCTTATTT AACTTTAATC GGCAGGTTAG TCTCCCAGTT GTCAGA 28892 ||||| |||||||||| |||||| .......... .......... .....GTTAG TCTCCCAGTT GTCAGA 441 hqPGS_C09HBa0168F14.1-1-_SGN-E295369+ (31097 30876,30800 30671,29053 28986,28912 28892) ******************************************************************************** EST sequence 54 +strand 268 n (File: SGN-E249520+) 1 AGAAAAAAGC TTCAATTTTT GCTTCTTCTT TGGATTGTGT GTTCTTTAAT CCTACCATGG 61 AAGCCACTGC TTCTTTCACT TCAACTATGG CTTCTCACCA TTTCTTTCCA CTTTCTAAAG 121 CCACCCTTTC ATCTTCTAAA CTTAATCCCA CTTGTAATTC TTCTTCTTCT TGGATTGGTT 181 CTACTCATTC TCTTTCATTT TCTTCAAGAA ATTCATTTAC TAGGGATACA TGGAGGGTGA 241 TCAATTCCAA GAATGTGGTA AGAAGGGA Predicted gene structure (within gDNA segment 31696 to 30144): Exon 1 31096 30876 ( 221 n); cDNA 1 221 ( 221 n); score: 0.991 Intron 1 30875 30801 ( 75 n); Pd: 0.761 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 30800 30754 ( 47 n); cDNA 222 268 ( 47 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E249520+ 0.991 268 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E249520+ (31096 30876,30800 30754) Alignment (genomic DNA sequence = upper lines): AGAAAAAAGC TTCAATTTTT GCTTCTTCTT TTGATTGTTT GTTCTTTAAT CCTACCATGG 31037 |||||||||| |||||||||| |||||||||| | |||||| | |||||||||| |||||||||| AGAAAAAAGC TTCAATTTTT GCTTCTTCTT TGGATTGTGT GTTCTTTAAT CCTACCATGG 60 AAGCCACTGC TTCTTTCACT TCAACTATGG CTTCTCACCA TTTCTTTCCA CTTTCTAAAG 30977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCACTGC TTCTTTCACT TCAACTATGG CTTCTCACCA TTTCTTTCCA CTTTCTAAAG 120 CCACCCTTTC ATCTTCTAAA CTTAATCCCA CTTGTAATTC TTCTTCTTCT TGGATTGGTT 30917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCCTTTC ATCTTCTAAA CTTAATCCCA CTTGTAATTC TTCTTCTTCT TGGATTGGTT 180 CTACTCATTC TCTTTCATTT TCTTCAAGAA ATTCATTTAC TGTAAGACCC TTTTGGATTT 30857 |||||||||| |||||||||| |||||||||| |||||||||| | CTACTCATTC TCTTTCATTT TCTTCAAGAA ATTCATTTAC T......... .......... 221 TGGTTAGTTT TTTTTTTTTT TTGTAGTTTT TGGTTAAAGA TTGAATTTTT ATGTAGAGGG 30797 |||| .......... .......... .......... .......... .......... ......AGGG 225 ATACATGGAG GGTGATCAAT TCCAAGAATG TGGTAAGAAG GGA 30754 |||||||||| |||||||||| |||||||||| |||||||||| ||| ATACATGGAG GGTGATCAAT TCCAAGAATG TGGTAAGAAG GGA 268 hqPGS_C09HBa0168F14.1-1-_SGN-E249520+ (31096 30876,30800 30754) ******************************************************************************** EST sequence 25 +strand 758 n (File: SGN-E540877+) 1 GGTGTTTGCT CCAAATATGA CACAGATGGC AGATCCGTTG ACTGCTTTGA TGTATGCAGT 61 TCAAGTTATG AACTTTCTCA AAACTCTTAT TCTCCGGACT TTGAAAGACC GAGAAGAAAC 121 TGTTGTAGAA GCTGGTCCTG CACCAGAACT GGAGCCTTTC GATGAAAATG GACATCATAG 181 TGCTTCACAA CCAATAGTTC AGAAGTCTAA CGAGATCGAG GAGGATATCC TTATATCCAA 241 AGAACGACCC TCAAGTGGCG CTGCTAATTC TGCCCTCAGA GAGATAATAG TTGAGAATAA 301 ATCCCATGGA TTACCATGTA CCATAGAGAA CGTTCTTCAG AAAGATGCGT TCGTTGATTG 361 TCTCAGTGAA ATCTCAAACC TACCAGACAG CACAAAGGAT GATGAGCTTG GATCTGGTAA 421 CATCAATTCT ACAAGTGGAA GAAGTCAACC AAAAATCCGA AGGACTAAAA GCGTGCATTC 481 GAGCAGTTCT AGTCTGAAAG GATCAAAGAA AATGATTGAA TGGCCAATAG GTCACATATC 541 TGGTAGTTTA GAGAAGGGCA AAGGAGTCAG AATCATCGAT AGGTTGAATT CGACAACAGA 601 AAGGGTGGAA GCATGGCGAT GAACAACGTC TCGCCTNCAG GGGCTATTGT TGCTACCTCA 661 TCAAGAAGTT AAATGGNTGT GATTTATGTT TGGAAAAAAA AGAAGAAGAC NATGTATTAT 721 CCAGTTATGT TTGTGCTTGG ATATTGGTTA CTTTCTTA Predicted gene structure (within gDNA segment 42410 to 40245): Exon 1 41891 41867 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 41866 41588 ( 279 n); Pd: 1.000 (s: 0), Pa: 0.994 (s: 1.00) Exon 2 41587 40855 ( 733 n); cDNA 26 758 ( 733 n); score: 0.995 MATCH C09HBa0168F14.1-1- SGN-E540877+ 0.995 758 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E540877+ (41891 41867,41587 40855) Alignment (genomic DNA sequence = upper lines): GGTGTTTGCT CCAAATATGA CACAGGTAAG TCAAAACTTT CATGCAATTT AAAAGAAGGA 41832 |||||||||| |||||||||| ||||| GGTGTTTGCT CCAAATATGA CACAG..... .......... .......... .......... 25 ATCATATTGT TGTTCCTATA ACGTCTCTTT TCATTTTCTT AGTTTCGGGT GTGGGTAAGC 41772 .......... .......... .......... .......... .......... .......... 25 GTTTGGGGGG TTACAGCTTG TTAGGAAAGT TGTCGTGGTT GTGATATTTC CTATATGAAA 41712 .......... .......... .......... .......... .......... .......... 25 GGAGTGCAAT TTCCATTTCA TAGACAGCAA CCTAAACGTG TCAATGAAAC TAATACAATA 41652 .......... .......... .......... .......... .......... .......... 25 GCTCAATCAT TAGTCAGCAA GTGTTTTCTT GATTAACAGA TGGTGCAACT TCTTTTTCCT 41592 .......... .......... .......... .......... .......... .......... 25 GCAGATGGCA GATCCGTTGA CTGCTTTGAT GTATGCAGTT CAAGTTATGA ACTTTCTCAA 41532 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....ATGGCA GATCCGTTGA CTGCTTTGAT GTATGCAGTT CAAGTTATGA ACTTTCTCAA 81 AACTCTTATT CTCCGGACTT TGAAAGACCG AGAAGAAACT GTTGTAGAAG CTGGTCCTGC 41472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCTTATT CTCCGGACTT TGAAAGACCG AGAAGAAACT GTTGTAGAAG CTGGTCCTGC 141 ACCAGAACTG GAGCCTTTCG ATGAAAATGG ACATCATAGT GCTTCACAAC CAATAGTTCA 41412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGAACTG GAGCCTTTCG ATGAAAATGG ACATCATAGT GCTTCACAAC CAATAGTTCA 201 GAAGTCTAAC GAGATCGAGG AGGATATCCT TATATCCAAA GAACGACCCT CAAGTGGCGC 41352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCTAAC GAGATCGAGG AGGATATCCT TATATCCAAA GAACGACCCT CAAGTGGCGC 261 TGCTAATTCT GCCCTCAGAG AGATAATAGT TGAGAATAAA TCCCATGGAT TACCATGTAC 41292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTAATTCT GCCCTCAGAG AGATAATAGT TGAGAATAAA TCCCATGGAT TACCATGTAC 321 CATAGAGAAC GTTCTTCAGA AAGATGCGTT CGTTGATTGT CTCAGTGAAA TCTCAAACCT 41232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAGAGAAC GTTCTTCAGA AAGATGCGTT CGTTGATTGT CTCAGTGAAA TCTCAAACCT 381 ACCAGACAGC ACAAAGGATG ATGAGCTTGG ATCTGGTAAC ATCAATTCTA CAAGTGGAAG 41172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAGACAGC ACAAAGGATG ATGAGCTTGG ATCTGGTAAC ATCAATTCTA CAAGTGGAAG 441 AAGTCAACCA AAAATCCGAA GGACTAAAAG CGTGCATTCG AGCAGTTCTA GTCTGAAAGG 41112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCAACCA AAAATCCGAA GGACTAAAAG CGTGCATTCG AGCAGTTCTA GTCTGAAAGG 501 ATCAAAGAAA ATGATTGAAT GGCCAATAGG TCACATATCT GGTAGTTTAG AGAAGGGCAA 41052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGAAA ATGATTGAAT GGCCAATAGG TCACATATCT GGTAGTTTAG AGAAGGGCAA 561 AGGAGTCAGA ATCATCGATA GGTTGAATTC GACAACAGAA AGGGTGGAAG CATGGCGATG 40992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGTCAGA ATCATCGATA GGTTGAATTC GACAACAGAA AGGGTGGAAG CATGGCGATG 621 AACAACGTCT CGCCTCAAGG GGCTATTGTT GCTACCTCAT CAAGAAGTTA AATGGTTGTG 40932 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| AACAACGTCT CGCCTNCAGG GGCTATTGTT GCTACCTCAT CAAGAAGTTA AATGGNTGTG 681 ATTTATGTTT GGAAAAAAAA GAAGAAGACA ATGTATTATC CAGTTATGTT TGTGCTTGGA 40872 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATTTATGTTT GGAAAAAAAA GAAGAAGACN ATGTATTATC CAGTTATGTT TGTGCTTGGA 741 TATTGGTTAC TTTCTTA 40855 |||||||||| ||||||| TATTGGTTAC TTTCTTA 758 hqPGS_C09HBa0168F14.1-1-_SGN-E540877+ (41891 41867,41587 40855) ******************************************************************************** EST sequence 21 +strand 884 n (File: SGN-E553355+) 1 TTGACGTCCA TTGCTTAGCA GGTCTTATAA AGGCTTGGTT CAGAGAGTTG CCAACGGGAG 61 TTTTGGATTC TCTCTCGCCA GAGGAAATTA TGCGTGCTCA ATCGGAAGAA GAGTGTGTGC 121 GGCTCGTGAG ACTTCTTCCT CCAACTGAAG CTGCTCTATT AGATTGGGCT ATTAACTTGA 181 TGGCTGATGT TGCTCAACTG GAAAGTTTTA ACAAAATGAA TGCACGTAAT ATCGCTATGG 241 TGTTTGCTCC AAATATGACA CAGATGGCAG ATCCGTTGAC TGCTTTGATG TATGCAGTTC 301 AAGTTATGAA CTTTCTCAAA ACTCTTATTC TCCGGACTTT GAAAGACCGA GAAGAAACTG 361 TTGTAGAAGC TGGTCCTGCA CCAGAACTGG AGCCTTTCGA TGAAAATGGA CATCATAGTG 421 CTTCACAACC AATAGTTCAG AAGTCTAACG AGATCGAGGA GGATATCCTT ATATCCAAAG 481 AACGACCCTC AAGTGGCGCT GCTAATTCTG CCCTCAGAGA GATAATAGTT GAGAATAAAT 541 CCCATGGATT ACCATGTACC ATAGAGAACG TTCTTCAGAA AGATGCGTTC GTTGATTGTC 601 TCAGTGAAAT CTCAAACCTA CCAGACAGCA CAAAGGATGA TGAGCTTGGA TCTGGTAACA 661 TCAATTCTAC AAGTGGAAGA AGTCAACCAA AAATCCGAAG GACTAAAAGC GTGCATTCGA 721 GCAGTTCTAG TCTGAAAGGA TCAAAGAAAA TGATTGAATG GCCAATAGGT CACATATCTG 781 GTAGTTTAGA GAAGGGCAAA GGAGTCAGAA TCATCGATAG GTTGAATTCG ACAACAGAAA 841 GGGTGGAAGC ATGGCGATGA ACAACGTCTC GCCTCAAGGG GCTA Predicted gene structure (within gDNA segment 43244 to 40357): Exon 1 42644 42613 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 42612 42098 ( 515 n); Pd: 0.989 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 42097 41867 ( 231 n); cDNA 33 263 ( 231 n); score: 1.000 Intron 2 41866 41588 ( 279 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 41587 40967 ( 621 n); cDNA 264 884 ( 621 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E553355+ 1.000 884 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E553355+ (42644 42613,42097 41867,41587 40967) Alignment (genomic DNA sequence = upper lines): TTGACGTCCA TTGCTTAGCA GGTCTTATAA AGGTGATATT CTGCACCTTG CTCTCGGAAT 42585 |||||||||| |||||||||| |||||||||| || TTGACGTCCA TTGCTTAGCA GGTCTTATAA AG........ .......... .......... 32 ATGTTTCATT CTATGTTGCT CAGCCTCTCC AAAAATGCTG CCGGTCCCGT TCAGATCCTC 42525 .......... .......... .......... .......... .......... .......... 32 CAAAAAAGCA CTACTTTTAG AGGATCTGAC ACACACTTGC GATATTTTTG AAGAGTCAGG 42465 .......... .......... .......... .......... .......... .......... 32 GCGACATAGA TTCCATTTGA CATTTTTAGG TAATTGTTGA GAGGAAATTA TTTACTCGGA 42405 .......... .......... .......... .......... .......... .......... 32 TTGCAAGTTA TCAATATCTT CCCGTATCAG CTTTTGAGGC GAAATTTCTC ATTTTGGAGG 42345 .......... .......... .......... .......... .......... .......... 32 AAGTATACTT CCTCAAAATT GCATCTGAAC TTGAACTAAA ATTTCTTATC TTCTTCATTG 42285 .......... .......... .......... .......... .......... .......... 32 ATGAAGAAGG TACATTGTTA TGTTCTGATC AAGTTCAAAG AGTTCTTTCT CCTCTCCCTA 42225 .......... .......... .......... .......... .......... .......... 32 TATGGACAGC AGTAGGAGAT GGTTCTATTG ACATCAATAT TTGTTTTCCT TATGCATTTT 42165 .......... .......... .......... .......... .......... .......... 32 ATGATTGTTT TGATTTTTCA TTATATCTGT ATATGGTAAT TGACGTAGAG TGATGATATT 42105 .......... .......... .......... .......... .......... .......... 32 TTTATAGGCT TGGTTCAGAG AGTTGCCAAC GGGAGTTTTG GATTCTCTCT CGCCAGAGGA 42045 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCT TGGTTCAGAG AGTTGCCAAC GGGAGTTTTG GATTCTCTCT CGCCAGAGGA 85 AATTATGCGT GCTCAATCGG AAGAAGAGTG TGTGCGGCTC GTGAGACTTC TTCCTCCAAC 41985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATGCGT GCTCAATCGG AAGAAGAGTG TGTGCGGCTC GTGAGACTTC TTCCTCCAAC 145 TGAAGCTGCT CTATTAGATT GGGCTATTAA CTTGATGGCT GATGTTGCTC AACTGGAAAG 41925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTGCT CTATTAGATT GGGCTATTAA CTTGATGGCT GATGTTGCTC AACTGGAAAG 205 TTTTAACAAA ATGAATGCAC GTAATATCGC TATGGTGTTT GCTCCAAATA TGACACAGGT 41865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTTAACAAA ATGAATGCAC GTAATATCGC TATGGTGTTT GCTCCAAATA TGACACAG.. 263 AAGTCAAAAC TTTCATGCAA TTTAAAAGAA GGAATCATAT TGTTGTTCCT ATAACGTCTC 41805 .......... .......... .......... .......... .......... .......... 263 TTTTCATTTT CTTAGTTTCG GGTGTGGGTA AGCGTTTGGG GGGTTACAGC TTGTTAGGAA 41745 .......... .......... .......... .......... .......... .......... 263 AGTTGTCGTG GTTGTGATAT TTCCTATATG AAAGGAGTGC AATTTCCATT TCATAGACAG 41685 .......... .......... .......... .......... .......... .......... 263 CAACCTAAAC GTGTCAATGA AACTAATACA ATAGCTCAAT CATTAGTCAG CAAGTGTTTT 41625 .......... .......... .......... .......... .......... .......... 263 CTTGATTAAC AGATGGTGCA ACTTCTTTTT CCTGCAGATG GCAGATCCGT TGACTGCTTT 41565 ||| |||||||||| |||||||||| .......... .......... .......... .......ATG GCAGATCCGT TGACTGCTTT 286 GATGTATGCA GTTCAAGTTA TGAACTTTCT CAAAACTCTT ATTCTCCGGA CTTTGAAAGA 41505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTATGCA GTTCAAGTTA TGAACTTTCT CAAAACTCTT ATTCTCCGGA CTTTGAAAGA 346 CCGAGAAGAA ACTGTTGTAG AAGCTGGTCC TGCACCAGAA CTGGAGCCTT TCGATGAAAA 41445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGAAGAA ACTGTTGTAG AAGCTGGTCC TGCACCAGAA CTGGAGCCTT TCGATGAAAA 406 TGGACATCAT AGTGCTTCAC AACCAATAGT TCAGAAGTCT AACGAGATCG AGGAGGATAT 41385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACATCAT AGTGCTTCAC AACCAATAGT TCAGAAGTCT AACGAGATCG AGGAGGATAT 466 CCTTATATCC AAAGAACGAC CCTCAAGTGG CGCTGCTAAT TCTGCCCTCA GAGAGATAAT 41325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTATATCC AAAGAACGAC CCTCAAGTGG CGCTGCTAAT TCTGCCCTCA GAGAGATAAT 526 AGTTGAGAAT AAATCCCATG GATTACCATG TACCATAGAG AACGTTCTTC AGAAAGATGC 41265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGAGAAT AAATCCCATG GATTACCATG TACCATAGAG AACGTTCTTC AGAAAGATGC 586 GTTCGTTGAT TGTCTCAGTG AAATCTCAAA CCTACCAGAC AGCACAAAGG ATGATGAGCT 41205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGTTGAT TGTCTCAGTG AAATCTCAAA CCTACCAGAC AGCACAAAGG ATGATGAGCT 646 TGGATCTGGT AACATCAATT CTACAAGTGG AAGAAGTCAA CCAAAAATCC GAAGGACTAA 41145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCTGGT AACATCAATT CTACAAGTGG AAGAAGTCAA CCAAAAATCC GAAGGACTAA 706 AAGCGTGCAT TCGAGCAGTT CTAGTCTGAA AGGATCAAAG AAAATGATTG AATGGCCAAT 41085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCGTGCAT TCGAGCAGTT CTAGTCTGAA AGGATCAAAG AAAATGATTG AATGGCCAAT 766 AGGTCACATA TCTGGTAGTT TAGAGAAGGG CAAAGGAGTC AGAATCATCG ATAGGTTGAA 41025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTCACATA TCTGGTAGTT TAGAGAAGGG CAAAGGAGTC AGAATCATCG ATAGGTTGAA 826 TTCGACAACA GAAAGGGTGG AAGCATGGCG ATGAACAACG TCTCGCCTCA AGGGGCTA 40967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTCGACAACA GAAAGGGTGG AAGCATGGCG ATGAACAACG TCTCGCCTCA AGGGGCTA 884 hqPGS_C09HBa0168F14.1-1-_SGN-E553355+ (42644 42613,42097 41867,41587 40967) ******************************************************************************** EST sequence 19 +strand 836 n (File: SGN-E553250+) 1 TTGACGTCCA TTGCTTAGCA GGTCTTATAA AGGCTTGGTT CAGAGAGTTG CCAACGGGAG 61 TTTTGGATTC TCTCTCGCCA GAGGAAATTA TGCGTGCTCA ATCGGAAGAA GAGTGTGTGC 121 GGCTCGTGAG ACTTCTTCCT CCAACTGAAG CTGCTCTATT AGATTGGGCT ATTAACTTGA 181 TGGCTGATGT TGCTCAACTG GAAAGTTTTA ACAAAATGAA TGCACGTAAT ATCGCTATGG 241 TGTTTGCTCC AAATATGACA CAGATGGCAG ATCCGTTGAC TGCTTTGATG TATGCAGTTC 301 AAGTTATGAA CTTTCTCAAA ACTCTTATTC TCCGGACTTT GAAAGACCGA GAAGAAACTG 361 TTGTAGAAGC TGGTCCTGCA CCAGAACTGG AGCCTTTCGA TGAAAATGGA CATCATAGTG 421 CTTCACAACC AATAGTTCAG AAGTCTAACG AGATCGAGGA GGATATCCTT ATATCCAAAG 481 AACGACCCTC AAGTGGCGCT GCTAATTCTG CCCTCAGAGA GATAATAGTT GAGAATAAAT 541 CCCATGGATT ACCATGTACC ATAGAGAACG TTCTTCAGAA AGATGCGTTC GTTGATTGTC 601 TCAGTGAAAT CTCAAACCTA CCAGACAGCA CAAAGGATGA TGAGCTTGGA TCTGGTAACA 661 TCAATTCTAC AAGTGGAAGA AGTCAACCAA AAATCCGAAG GACTAAAAGC GTGCATTCGA 721 GCAGTTCTAG TCTGAAAGGA TCAAAGAAAA TGATTGAATG GCCAATAGGT CACATATCTG 781 GTAGTTTAGA GGAAGGCAAA GGAGTCAGAA TCATCGATAG GTTGAAATTC GACAAC Predicted gene structure (within gDNA segment 43244 to 40315): Exon 1 42644 42613 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 42612 42098 ( 515 n); Pd: 0.989 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 42097 41867 ( 231 n); cDNA 33 263 ( 231 n); score: 1.000 Intron 2 41866 41588 ( 279 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 41587 41016 ( 572 n); cDNA 264 836 ( 573 n); score: 0.992 MATCH C09HBa0168F14.1-1- SGN-E553250+ 0.994 835 0.999 C PGS_C09HBa0168F14.1-1-_SGN-E553250+ (42644 42613,42097 41867,41587 41016) Alignment (genomic DNA sequence = upper lines): TTGACGTCCA TTGCTTAGCA GGTCTTATAA AGGTGATATT CTGCACCTTG CTCTCGGAAT 42585 |||||||||| |||||||||| |||||||||| || TTGACGTCCA TTGCTTAGCA GGTCTTATAA AG........ .......... .......... 32 ATGTTTCATT CTATGTTGCT CAGCCTCTCC AAAAATGCTG CCGGTCCCGT TCAGATCCTC 42525 .......... .......... .......... .......... .......... .......... 32 CAAAAAAGCA CTACTTTTAG AGGATCTGAC ACACACTTGC GATATTTTTG AAGAGTCAGG 42465 .......... .......... .......... .......... .......... .......... 32 GCGACATAGA TTCCATTTGA CATTTTTAGG TAATTGTTGA GAGGAAATTA TTTACTCGGA 42405 .......... .......... .......... .......... .......... .......... 32 TTGCAAGTTA TCAATATCTT CCCGTATCAG CTTTTGAGGC GAAATTTCTC ATTTTGGAGG 42345 .......... .......... .......... .......... .......... .......... 32 AAGTATACTT CCTCAAAATT GCATCTGAAC TTGAACTAAA ATTTCTTATC TTCTTCATTG 42285 .......... .......... .......... .......... .......... .......... 32 ATGAAGAAGG TACATTGTTA TGTTCTGATC AAGTTCAAAG AGTTCTTTCT CCTCTCCCTA 42225 .......... .......... .......... .......... .......... .......... 32 TATGGACAGC AGTAGGAGAT GGTTCTATTG ACATCAATAT TTGTTTTCCT TATGCATTTT 42165 .......... .......... .......... .......... .......... .......... 32 ATGATTGTTT TGATTTTTCA TTATATCTGT ATATGGTAAT TGACGTAGAG TGATGATATT 42105 .......... .......... .......... .......... .......... .......... 32 TTTATAGGCT TGGTTCAGAG AGTTGCCAAC GGGAGTTTTG GATTCTCTCT CGCCAGAGGA 42045 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCT TGGTTCAGAG AGTTGCCAAC GGGAGTTTTG GATTCTCTCT CGCCAGAGGA 85 AATTATGCGT GCTCAATCGG AAGAAGAGTG TGTGCGGCTC GTGAGACTTC TTCCTCCAAC 41985 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATGCGT GCTCAATCGG AAGAAGAGTG TGTGCGGCTC GTGAGACTTC TTCCTCCAAC 145 TGAAGCTGCT CTATTAGATT GGGCTATTAA CTTGATGGCT GATGTTGCTC AACTGGAAAG 41925 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTGCT CTATTAGATT GGGCTATTAA CTTGATGGCT GATGTTGCTC AACTGGAAAG 205 TTTTAACAAA ATGAATGCAC GTAATATCGC TATGGTGTTT GCTCCAAATA TGACACAGGT 41865 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTTAACAAA ATGAATGCAC GTAATATCGC TATGGTGTTT GCTCCAAATA TGACACAG.. 263 AAGTCAAAAC TTTCATGCAA TTTAAAAGAA GGAATCATAT TGTTGTTCCT ATAACGTCTC 41805 .......... .......... .......... .......... .......... .......... 263 TTTTCATTTT CTTAGTTTCG GGTGTGGGTA AGCGTTTGGG GGGTTACAGC TTGTTAGGAA 41745 .......... .......... .......... .......... .......... .......... 263 AGTTGTCGTG GTTGTGATAT TTCCTATATG AAAGGAGTGC AATTTCCATT TCATAGACAG 41685 .......... .......... .......... .......... .......... .......... 263 CAACCTAAAC GTGTCAATGA AACTAATACA ATAGCTCAAT CATTAGTCAG CAAGTGTTTT 41625 .......... .......... .......... .......... .......... .......... 263 CTTGATTAAC AGATGGTGCA ACTTCTTTTT CCTGCAGATG GCAGATCCGT TGACTGCTTT 41565 ||| |||||||||| |||||||||| .......... .......... .......... .......ATG GCAGATCCGT TGACTGCTTT 286 GATGTATGCA GTTCAAGTTA TGAACTTTCT CAAAACTCTT ATTCTCCGGA CTTTGAAAGA 41505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTATGCA GTTCAAGTTA TGAACTTTCT CAAAACTCTT ATTCTCCGGA CTTTGAAAGA 346 CCGAGAAGAA ACTGTTGTAG AAGCTGGTCC TGCACCAGAA CTGGAGCCTT TCGATGAAAA 41445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGAAGAA ACTGTTGTAG AAGCTGGTCC TGCACCAGAA CTGGAGCCTT TCGATGAAAA 406 TGGACATCAT AGTGCTTCAC AACCAATAGT TCAGAAGTCT AACGAGATCG AGGAGGATAT 41385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACATCAT AGTGCTTCAC AACCAATAGT TCAGAAGTCT AACGAGATCG AGGAGGATAT 466 CCTTATATCC AAAGAACGAC CCTCAAGTGG CGCTGCTAAT TCTGCCCTCA GAGAGATAAT 41325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTATATCC AAAGAACGAC CCTCAAGTGG CGCTGCTAAT TCTGCCCTCA GAGAGATAAT 526 AGTTGAGAAT AAATCCCATG GATTACCATG TACCATAGAG AACGTTCTTC AGAAAGATGC 41265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGAGAAT AAATCCCATG GATTACCATG TACCATAGAG AACGTTCTTC AGAAAGATGC 586 GTTCGTTGAT TGTCTCAGTG AAATCTCAAA CCTACCAGAC AGCACAAAGG ATGATGAGCT 41205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGTTGAT TGTCTCAGTG AAATCTCAAA CCTACCAGAC AGCACAAAGG ATGATGAGCT 646 TGGATCTGGT AACATCAATT CTACAAGTGG AAGAAGTCAA CCAAAAATCC GAAGGACTAA 41145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCTGGT AACATCAATT CTACAAGTGG AAGAAGTCAA CCAAAAATCC GAAGGACTAA 706 AAGCGTGCAT TCGAGCAGTT CTAGTCTGAA AGGATCAAAG AAAATGATTG AATGGCCAAT 41085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCGTGCAT TCGAGCAGTT CTAGTCTGAA AGGATCAAAG AAAATGATTG AATGGCCAAT 766 AGGTCACATA TCTGGTAGTT TAGAGAAGGG CAAAGGAGTC AGAATCATCG ATAGGTTG-A 41026 |||||||||| |||||||||| ||||| | || |||||||||| |||||||||| |||||||| | AGGTCACATA TCTGGTAGTT TAGAGGAAGG CAAAGGAGTC AGAATCATCG ATAGGTTGAA 826 ATTCGACAAC 41016 |||||||||| ATTCGACAAC 836 hqPGS_C09HBa0168F14.1-1-_SGN-E553250+ (42644 42613,42097 41867,41587 41016) ******************************************************************************** EST sequence 52 +strand 548 n (File: SGN-E290732+) 1 GTGTTTGCTC CAAATATGAC ACAGATGGCA GATCCGTTGA CTGCTTTGAT GTATGCAGTT 61 CAAGTTATGA ACTTTCTCAA AACTCTTATT CTCCGGACTT TGAAAGACCG AGAAGAAACT 121 GTTGTAGAAG CTGGTCCTGC ACCAGAACTG GAGCCTTTCG ATGAAAATGG ACATCATAGT 181 GCTTCACAAC CAATAGTTCA GAAGTCTAAC GAGATCGAGG AGGATATCCT TATATCCAAA 241 GAACGACCCT CAAGTGGCGC TGCTAATTCT GCCCTCAGAG AGATAATAGT TGAGAATAAA 301 TCCCATGGAT TACCATGTAC CATAGAGAAC GTTCTTCAGA AAGATGCGTT CGTTGATTGT 361 CTCAGTGAAA TCTCAAACCT ACCAGACAGC ACAAAGGATG ATGAGCTTGG ATCTGGTAAC 421 ATCAATTCTA CAAGTGGAAG AAGTCAACCA AAAATCCGAA GGACTAAAAG CGTGCATTCG 481 AGCAGTTCTA GTCTGAAAGG ATCAAAGAAA ATGATTGAAT GGCCAATAGG TCACATATCT 541 GGTAGTTT Predicted gene structure (within gDNA segment 42400 to 40454): Exon 1 41890 41867 ( 24 n); cDNA 1 24 ( 24 n); score: 1.000 Intron 1 41866 41588 ( 279 n); Pd: 1.000 (s: 0), Pa: 0.994 (s: 1.00) Exon 2 41587 41064 ( 524 n); cDNA 25 548 ( 524 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E290732+ 1.000 548 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E290732+ (41890 41867,41587 41064) Alignment (genomic DNA sequence = upper lines): GTGTTTGCTC CAAATATGAC ACAGGTAAGT CAAAACTTTC ATGCAATTTA AAAGAAGGAA 41831 |||||||||| |||||||||| |||| GTGTTTGCTC CAAATATGAC ACAG...... .......... .......... .......... 24 TCATATTGTT GTTCCTATAA CGTCTCTTTT CATTTTCTTA GTTTCGGGTG TGGGTAAGCG 41771 .......... .......... .......... .......... .......... .......... 24 TTTGGGGGGT TACAGCTTGT TAGGAAAGTT GTCGTGGTTG TGATATTTCC TATATGAAAG 41711 .......... .......... .......... .......... .......... .......... 24 GAGTGCAATT TCCATTTCAT AGACAGCAAC CTAAACGTGT CAATGAAACT AATACAATAG 41651 .......... .......... .......... .......... .......... .......... 24 CTCAATCATT AGTCAGCAAG TGTTTTCTTG ATTAACAGAT GGTGCAACTT CTTTTTCCTG 41591 .......... .......... .......... .......... .......... .......... 24 CAGATGGCAG ATCCGTTGAC TGCTTTGATG TATGCAGTTC AAGTTATGAA CTTTCTCAAA 41531 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...ATGGCAG ATCCGTTGAC TGCTTTGATG TATGCAGTTC AAGTTATGAA CTTTCTCAAA 81 ACTCTTATTC TCCGGACTTT GAAAGACCGA GAAGAAACTG TTGTAGAAGC TGGTCCTGCA 41471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTTATTC TCCGGACTTT GAAAGACCGA GAAGAAACTG TTGTAGAAGC TGGTCCTGCA 141 CCAGAACTGG AGCCTTTCGA TGAAAATGGA CATCATAGTG CTTCACAACC AATAGTTCAG 41411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAACTGG AGCCTTTCGA TGAAAATGGA CATCATAGTG CTTCACAACC AATAGTTCAG 201 AAGTCTAACG AGATCGAGGA GGATATCCTT ATATCCAAAG AACGACCCTC AAGTGGCGCT 41351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCTAACG AGATCGAGGA GGATATCCTT ATATCCAAAG AACGACCCTC AAGTGGCGCT 261 GCTAATTCTG CCCTCAGAGA GATAATAGTT GAGAATAAAT CCCATGGATT ACCATGTACC 41291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAATTCTG CCCTCAGAGA GATAATAGTT GAGAATAAAT CCCATGGATT ACCATGTACC 321 ATAGAGAACG TTCTTCAGAA AGATGCGTTC GTTGATTGTC TCAGTGAAAT CTCAAACCTA 41231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAGAACG TTCTTCAGAA AGATGCGTTC GTTGATTGTC TCAGTGAAAT CTCAAACCTA 381 CCAGACAGCA CAAAGGATGA TGAGCTTGGA TCTGGTAACA TCAATTCTAC AAGTGGAAGA 41171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGACAGCA CAAAGGATGA TGAGCTTGGA TCTGGTAACA TCAATTCTAC AAGTGGAAGA 441 AGTCAACCAA AAATCCGAAG GACTAAAAGC GTGCATTCGA GCAGTTCTAG TCTGAAAGGA 41111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAACCAA AAATCCGAAG GACTAAAAGC GTGCATTCGA GCAGTTCTAG TCTGAAAGGA 501 TCAAAGAAAA TGATTGAATG GCCAATAGGT CACATATCTG GTAGTTT 41064 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCAAAGAAAA TGATTGAATG GCCAATAGGT CACATATCTG GTAGTTT 548 hqPGS_C09HBa0168F14.1-1-_SGN-E290732+ (41890 41867,41587 41064) ******************************************************************************** EST sequence 50 +strand 551 n (File: SGN-E333964+) 1 TTTCATTTGA CTCTCGAGGA AATAGTGTCC CCACAATCCT TCTGATGATG CAAGGGCGCT 61 TATACGTTCA AGGTGGCTTG CAGGCTGAAG GGATCTTCAG GATCAATGCC GAAAATGGCC 121 AAGAAGAATT TGTCAGGGAG CAGCTAAATA GGGGGATTAT TCCAGATAAC ATTGACGTCC 181 ATTGCTTAGC AGGTCTTATA AAGGCTTGGT TCAGAGAGTT GCCAACGGGA GTTTTGGATT 241 CTCTCTCGCC AGAGGAAATT ATGCGTGCTC AATCGGAAGA AGAGTGTGTG CGGCTCGTGA 301 GACTTCTTCC TCCAACTGAA GCTGCTCTAT TAGATTGGGC TATTAACTTG ATGGCTGATG 361 TTGCTCAACT GGAAAGTTTT AACAAAATGA ATGCACGTAA TATCGCTATG GTGTTTGCTC 421 CAAATATGAC ACAGGTAAGT CAAAACTTTC ATGCAATTTA AAAGAAGGAA TCATATTGTT 481 GTTCCTATAA CGTCTCTTTT CATTTTCTTA GTTTCGGGTG TGGGTAAGCG TTTGGGGGGT 541 TACAGCTTGT T Predicted gene structure (within gDNA segment 43554 to 41140): Exon 1 42954 42872 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 42871 42733 ( 139 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 42732 42613 ( 120 n); cDNA 84 203 ( 120 n); score: 1.000 Intron 2 42612 42098 ( 515 n); Pd: 0.989 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 42097 41750 ( 348 n); cDNA 204 551 ( 348 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E333964+ 1.000 551 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E333964+ (42954 42872,42732 42613,42097 41750) Alignment (genomic DNA sequence = upper lines): TTTCATTTGA CTCTCGAGGA AATAGTGTCC CCACAATCCT TCTGATGATG CAAGGGCGCT 42895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATTTGA CTCTCGAGGA AATAGTGTCC CCACAATCCT TCTGATGATG CAAGGGCGCT 60 TATACGTTCA AGGTGGCTTG CAGGTGCGTA TTCACCAACT CTTTAATCTC CCTCATGTAG 42835 |||||||||| |||||||||| ||| TATACGTTCA AGGTGGCTTG CAG....... .......... .......... .......... 83 ATCAATTAAA TGTTTGACTA GGCATCTATC ACTGGTATGT GTGATCTCTA GAAGTTCGTA 42775 .......... .......... .......... .......... .......... .......... 83 AGTATAACTT TTCAATGATG AAAATTAGTT ATTCACTTGC AGGCTGAAGG GATCTTCAGG 42715 |||||||| |||||||||| .......... .......... .......... .......... ..GCTGAAGG GATCTTCAGG 101 ATCAATGCCG AAAATGGCCA AGAAGAATTT GTCAGGGAGC AGCTAAATAG GGGGATTATT 42655 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAATGCCG AAAATGGCCA AGAAGAATTT GTCAGGGAGC AGCTAAATAG GGGGATTATT 161 CCAGATAACA TTGACGTCCA TTGCTTAGCA GGTCTTATAA AGGTGATATT CTGCACCTTG 42595 |||||||||| |||||||||| |||||||||| |||||||||| || CCAGATAACA TTGACGTCCA TTGCTTAGCA GGTCTTATAA AG........ .......... 203 CTCTCGGAAT ATGTTTCATT CTATGTTGCT CAGCCTCTCC AAAAATGCTG CCGGTCCCGT 42535 .......... .......... .......... .......... .......... .......... 203 TCAGATCCTC CAAAAAAGCA CTACTTTTAG AGGATCTGAC ACACACTTGC GATATTTTTG 42475 .......... .......... .......... .......... .......... .......... 203 AAGAGTCAGG GCGACATAGA TTCCATTTGA CATTTTTAGG TAATTGTTGA GAGGAAATTA 42415 .......... .......... .......... .......... .......... .......... 203 TTTACTCGGA TTGCAAGTTA TCAATATCTT CCCGTATCAG CTTTTGAGGC GAAATTTCTC 42355 .......... .......... .......... .......... .......... .......... 203 ATTTTGGAGG AAGTATACTT CCTCAAAATT GCATCTGAAC TTGAACTAAA ATTTCTTATC 42295 .......... .......... .......... .......... .......... .......... 203 TTCTTCATTG ATGAAGAAGG TACATTGTTA TGTTCTGATC AAGTTCAAAG AGTTCTTTCT 42235 .......... .......... .......... .......... .......... .......... 203 CCTCTCCCTA TATGGACAGC AGTAGGAGAT GGTTCTATTG ACATCAATAT TTGTTTTCCT 42175 .......... .......... .......... .......... .......... .......... 203 TATGCATTTT ATGATTGTTT TGATTTTTCA TTATATCTGT ATATGGTAAT TGACGTAGAG 42115 .......... .......... .......... .......... .......... .......... 203 TGATGATATT TTTATAGGCT TGGTTCAGAG AGTTGCCAAC GGGAGTTTTG GATTCTCTCT 42055 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCT TGGTTCAGAG AGTTGCCAAC GGGAGTTTTG GATTCTCTCT 246 CGCCAGAGGA AATTATGCGT GCTCAATCGG AAGAAGAGTG TGTGCGGCTC GTGAGACTTC 41995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCAGAGGA AATTATGCGT GCTCAATCGG AAGAAGAGTG TGTGCGGCTC GTGAGACTTC 306 TTCCTCCAAC TGAAGCTGCT CTATTAGATT GGGCTATTAA CTTGATGGCT GATGTTGCTC 41935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCTCCAAC TGAAGCTGCT CTATTAGATT GGGCTATTAA CTTGATGGCT GATGTTGCTC 366 AACTGGAAAG TTTTAACAAA ATGAATGCAC GTAATATCGC TATGGTGTTT GCTCCAAATA 41875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGGAAAG TTTTAACAAA ATGAATGCAC GTAATATCGC TATGGTGTTT GCTCCAAATA 426 TGACACAGGT AAGTCAAAAC TTTCATGCAA TTTAAAAGAA GGAATCATAT TGTTGTTCCT 41815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACACAGGT AAGTCAAAAC TTTCATGCAA TTTAAAAGAA GGAATCATAT TGTTGTTCCT 486 ATAACGTCTC TTTTCATTTT CTTAGTTTCG GGTGTGGGTA AGCGTTTGGG GGGTTACAGC 41755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAACGTCTC TTTTCATTTT CTTAGTTTCG GGTGTGGGTA AGCGTTTGGG GGGTTACAGC 546 TTGTT 41750 ||||| TTGTT 551 hqPGS_C09HBa0168F14.1-1-_SGN-E333964+ (42954 42872,42732 42613,42097 41750) ******************************************************************************** EST sequence 5 -strand 782 n (File: SGN-E540875-) 1 TTCGATGAAA ATGGACATCA TAGTGCTTCA CAACCAATAG TTCAGAAGTC TAACGAGATC 61 GAGGAGGATA TCCTTATATC CAAAGAACGA CCCTCAAGTG GCGCTGCTAA TTCTGCCCTC 121 AGAGAGATAA TAGTTGAGAA TAAATCCCAT GGATTACCAT GTACCATAGA GAACGTTCTT 181 CAGAAAGATG CGTTCGTTGA TTGTCTCAGT GAAATCTCAA ACCTACCAGA CAGCACAAAG 241 GATGATGAGC TTGGATCTGG TAACATCAAT TCTACAAGTG GAAGAAGTCA ACCAAAAATC 301 CGAAGGACTA AAAGCGTGCA TTCGAGCAGT TCTAGTCTGA AAGGATCAAA GAAAATGATT 361 GAATGGCCAA TAGGTCACAT ATCTGGTAGT TTAGAGAAGG GCAAAGGAGT CAGAATCATC 421 GATAGGTTGA ATTCGACAAC AGAAAGGGTG GAAGCATGGC GATGAACAAC GTCTCGCCTC 481 AAGGGGCTAT TGTTGCTACC TCATCAAGAA GTTAAATGGT TGTGATTTAT GTTTGGAAAA 541 AAAAGAAGAA GACAATGTAT TATCCAGTTA TGTTTGTGCT TGGATATTGG TTACTTTCTT 601 AGTAGTTCAA CAGGAATTCT GTCACCTTTC TCTCTAGTCA TGTTTGGCTG GGGAAACTAG 661 CAGGATGAAT GTAATTTATG TTTTTTTTTT TTTAGAATGA ATATTGTTTT GGTTTCCAAT 721 TTCAATATGA TTTTCTTCAA TTTGACATAA AAAAAAAAAA AAAAAAACTC GAGGGGGGCC 781 CG Predicted gene structure (within gDNA segment 42065 to 39795): Exon 1 41455 40702 ( 754 n); cDNA 1 754 ( 754 n); score: 0.999 PPA cDNA 755 768 MATCH C09HBa0168F14.1-1- SGN-E540875- 0.999 754 0.964 C PGS_C09HBa0168F14.1-1-_SGN-E540875- (41455 40702) Alignment (genomic DNA sequence = upper lines): TTCGATGAAA ATGGACATCA TAGTGCTTCA CAACCAATAG TTCAGAAGTC TAACGAGATC 41396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGATGAAA ATGGACATCA TAGTGCTTCA CAACCAATAG TTCAGAAGTC TAACGAGATC 60 GAGGAGGATA TCCTTATATC CAAAGAACGA CCCTCAAGTG GCGCTGCTAA TTCTGCCCTC 41336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGGATA TCCTTATATC CAAAGAACGA CCCTCAAGTG GCGCTGCTAA TTCTGCCCTC 120 AGAGAGATAA TAGTTGAGAA TAAATCCCAT GGATTACCAT GTACCATAGA GAACGTTCTT 41276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAGATAA TAGTTGAGAA TAAATCCCAT GGATTACCAT GTACCATAGA GAACGTTCTT 180 CAGAAAGATG CGTTCGTTGA TTGTCTCAGT GAAATCTCAA ACCTACCAGA CAGCACAAAG 41216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAAGATG CGTTCGTTGA TTGTCTCAGT GAAATCTCAA ACCTACCAGA CAGCACAAAG 240 GATGATGAGC TTGGATCTGG TAACATCAAT TCTACAAGTG GAAGAAGTCA ACCAAAAATC 41156 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATGAGC TTGGATCTGG TAACATCAAT TCTACAAGTG GAAGAAGTCA ACCAAAAATC 300 CGAAGGACTA AAAGCGTGCA TTCGAGCAGT TCTAGTCTGA AAGGATCAAA GAAAATGATT 41096 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGGACTA AAAGCGTGCA TTCGAGCAGT TCTAGTCTGA AAGGATCAAA GAAAATGATT 360 GAATGGCCAA TAGGTCACAT ATCTGGTAGT TTAGAGAAGG GCAAAGGAGT CAGAATCATC 41036 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGGCCAA TAGGTCACAT ATCTGGTAGT TTAGAGAAGG GCAAAGGAGT CAGAATCATC 420 GATAGGTTGA ATTCGACAAC AGAAAGGGTG GAAGCATGGC GATGAACAAC GTCTCGCCTC 40976 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAGGTTGA ATTCGACAAC AGAAAGGGTG GAAGCATGGC GATGAACAAC GTCTCGCCTC 480 AAGGGGCTAT TGTTGCTACC TCATCAAGAA GTTAAATGGT TGTGATTTAT GTTTGGAAAA 40916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGGCTAT TGTTGCTACC TCATCAAGAA GTTAAATGGT TGTGATTTAT GTTTGGAAAA 540 AAAAGAAGAA GACAATGTAT TATCCAGTTA TGTTTGTGCT TGGATATTGG TTACTTTCTT 40856 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGAAGAA GACAATGTAT TATCCAGTTA TGTTTGTGCT TGGATATTGG TTACTTTCTT 600 AGTAGTTCAA CAGGAATTCT GTCACCTTTC TCTCTAGTCA TGTTTGGCTG GGGAAACTAG 40796 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAGTTCAA CAGGAATTCT GTCACCTTTC TCTCTAGTCA TGTTTGGCTG GGGAAACTAG 660 CAGGATGAAT GTAATTTATG TTTTTTTTTT TTTAGAATGA ATATTGTTTT GGTTTCCAAT 40736 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGATGAAT GTAATTTATG TTTTTTTTTT TTTAGAATGA ATATTGTTTT GGTTTCCAAT 720 TTCAATATGA TTTTCTTCAA TTTGACATAA ACAA 40702 |||||||||| |||||||||| |||||||||| | || TTCAATATGA TTTTCTTCAA TTTGACATAA AAAA 754 hqPGS_C09HBa0168F14.1-1-_SGN-E540875- (41455 40702) ******************************************************************************** EST sequence 41 +strand 529 n (File: SGN-E207739+) 1 TTTCTTGGTC TTCCTGTTGA GTTTGAACCT GAAGTACCTA GAAGACCCCC AAGTGCCAGT 61 ACAAGAGTCT TTGGAGTTTC GACAGATTGC ATGCAGCTTT CATTTGACTC TCGAGGAAAT 121 AGTGTCCCCA CAATCCTTCT GATGATGCAA GGGCGCTTAT ACGTTCAAGG TGGCTTGCAG 181 GCTGAAGGGA TCTTCAGGAT CAATGCCGAA AATGGCCAAG AAGAATTTGT CAGGGAGCAG 241 CTAAATAGGG GGATTATTCC AGATAACATT GACGTCCATT GCTTAGCAGG TCTTATAAAG 301 GCTTGGTTCA GAGAGTTGCC AACGGGAGTT TTGGATTCTC TCTCGCCAGA GGAAATTATG 361 CGTGCTCAAT CGGAAGAAGA GTGTGTGCGG CTCGTGAGAC TTCTTCCTCC AACTGAAGCT 421 GCTCTATTAG ATTGGGCTAT TAACTTGATG GCTGATGTTG CTCAACTGGA AAGTTTTAAC 481 AAAATGAATG CACGTAATAT CGCTATGGTG TTTGCTCCAA ATATGACAC Predicted gene structure (within gDNA segment 45230 to 41259): Exon 1 44630 44572 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 44571 42993 (1579 n); Pd: 0.980 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 2 42992 42872 ( 121 n); cDNA 60 180 ( 121 n); score: 1.000 Intron 2 42871 42733 ( 139 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 42732 42613 ( 120 n); cDNA 181 300 ( 120 n); score: 1.000 Intron 3 42612 42098 ( 515 n); Pd: 0.989 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 42097 41869 ( 229 n); cDNA 301 529 ( 229 n); score: 1.000 MATCH C09HBa0168F14.1-1- SGN-E207739+ 1.000 529 1.000 C PGS_C09HBa0168F14.1-1-_SGN-E207739+ (44630 44572,42992 42872,42732 42613,42097 41869) Alignment (genomic DNA sequence = upper lines): TTTCTTGGTC TTCCTGTTGA GTTTGAACCT GAAGTACCTA GAAGACCCCC AAGTGCCAGG 44571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTTCTTGGTC TTCCTGTTGA GTTTGAACCT GAAGTACCTA GAAGACCCCC AAGTGCCAG. 59 TTTGATCTTG TTCTTTTCTT TTTTGTGAAT TCGCGGGGTT TTCTAAGTAG AGATTCATAT 44511 .......... .......... .......... .......... .......... .......... 59 AGTCGACTCT AACTTGATTG GAACTGAGAC GTAATTGTTG TTGTTTGTTC TAAATCATTC 44451 .......... .......... .......... .......... .......... .......... 59 ATGAGTTAGG ATATGTGCTT GGTGTTACTT TATAACCATT ATTATTCTTT TGTTTTTTTC 44391 .......... .......... .......... .......... .......... .......... 59 CTTGTATGTG TTTCTAGTTT TGTTGTGTTC TGATGACATT TAATGTTCGA ATGTTTCCGC 44331 .......... .......... .......... .......... .......... .......... 59 TGTCCTAAGC TAGTTGTCAT GTTTTGCTTT TCGAGAGTCA GCTTTGATCA ATCTTTTGGA 44271 .......... .......... .......... .......... .......... .......... 59 CCTACACTGA ATTAGTTTAA TTTGATATTC GAAACCTATA CTTACAAGTT GCAACTTTTC 44211 .......... .......... .......... .......... .......... .......... 59 TCATATCAAT ATGGTGAAGA AATACATCTT AATATATTGG TTATAGTTCA TGTAGTTTGA 44151 .......... .......... .......... .......... .......... .......... 59 ATCTCAAGAA GCAAAATATA ACTACTATAT ATTTTGGGTC GGACGGAGTA GTAGGATATG 44091 .......... .......... .......... .......... .......... .......... 59 ATTTTGTGAA ATTCCATAAT TCATTATTAT TGTTATTATT ATTCAAGTTT TATCTTTTTG 44031 .......... .......... .......... .......... .......... .......... 59 TTCTTTTCTC TTTATGGTGA GCTGAAAAAG GGCTGTTGGC TTCTTTTAGT TTAGTTGTTT 43971 .......... .......... .......... .......... .......... .......... 59 GGGCTTTTGA CAGCCTTGTC CAGCAAATGC TTATGGTAAG GAGAATATAT AATTATGGTT 43911 .......... .......... .......... .......... .......... .......... 59 TAAATTATTC GGAGAAAACT AAAATGCAGT GGAATGCATG AATAGTTGAT TAATATATCT 43851 .......... .......... .......... .......... .......... .......... 59 GTGAATTGAT GTGTAATTGG TGTGTCCTTG TCTTCCTTAC TAGACTATAA TTAGATCGAA 43791 .......... .......... .......... .......... .......... .......... 59 AGTAACATGT TCTTTTGCTT CAAGTTCAGA TTTTCCTTTC TTCATGATGA CTAGACTTAC 43731 .......... .......... .......... .......... .......... .......... 59 CAAAAATTGA CTATTTTTAT TTGGTTGGGG AATTTAAAAG CATATTGCTT ATTCAGTAAT 43671 .......... .......... .......... .......... .......... .......... 59 GTAGAAATTT TATCACGTGT TGGCAATATA TATGTTGTGT ATGAAAATGG TTAAGAAAAG 43611 .......... .......... .......... .......... .......... .......... 59 GGTGCAGAGA AACATAGTGA AAGCTTAGTA TAATTACTCT TCTAATTAAG AAAGTTCTTT 43551 .......... .......... .......... .......... .......... .......... 59 GAACATTTTG AAATGGTAGT TGCTTAGGAA ATCCCGGGAT AGATGAGCAA AAATTGAAGA 43491 .......... .......... .......... .......... .......... .......... 59 AAATGAAGTA TAGGCCTTTT AATTTTACCT TCTAGTTTCA TATGTCCTCG AGCACTGTGG 43431 .......... .......... .......... .......... .......... .......... 59 GAATATGTCA TCCTTCAACA TAGTAAAAGA AAATGAGAAC TGTAAAAAAG AAAAGAAAAA 43371 .......... .......... .......... .......... .......... .......... 59 GTTGGTTCTC TTTGTTTGGC AAACAAGCTG TTGCTTCATA ATTGTTACAA TAATAACTAT 43311 .......... .......... .......... .......... .......... .......... 59 GTTAACAGTC CAAAACAATT GGGGTAAGGC GATATGAATC CTCTATATCT TTCAACTTCC 43251 .......... .......... .......... .......... .......... .......... 59 TATGTGCCTG TTTCATCTCA ATACTTCTAT TTCATAATTG TTAAAGTTGA TACCGACCTA 43191 .......... .......... .......... .......... .......... .......... 59 GTACTGAAAA GCTATATCAT ATATCATACA TGTTTTGTGA TGGCGTATTA CTTTTGTGTA 43131 .......... .......... .......... .......... .......... .......... 59 ACTTCTTTTG TATCGTAGTA ACTTCTGATC CTATCCTTTT TACGAGCTTT TATATGGTGT 43071 .......... .......... .......... .......... .......... .......... 59 AGAACAACTT GTTCAGATTG TTGCCTAGTA AAAAAGTGTC ACGCTCTTCT AATTGATATT 43011 .......... .......... .......... .......... .......... .......... 59 GGTGTTGTTT TTTTGCAGTA CAAGAGTCTT TGGAGTTTCG ACAGATTGCA TGCAGCTTTC 42951 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TA CAAGAGTCTT TGGAGTTTCG ACAGATTGCA TGCAGCTTTC 101 ATTTGACTCT CGAGGAAATA GTGTCCCCAC AATCCTTCTG ATGATGCAAG GGCGCTTATA 42891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGACTCT CGAGGAAATA GTGTCCCCAC AATCCTTCTG ATGATGCAAG GGCGCTTATA 161 CGTTCAAGGT GGCTTGCAGG TGCGTATTCA CCAACTCTTT AATCTCCCTC ATGTAGATCA 42831 |||||||||| ||||||||| CGTTCAAGGT GGCTTGCAG. .......... .......... .......... .......... 180 ATTAAATGTT TGACTAGGCA TCTATCACTG GTATGTGTGA TCTCTAGAAG TTCGTAAGTA 42771 .......... .......... .......... .......... .......... .......... 180 TAACTTTTCA ATGATGAAAA TTAGTTATTC ACTTGCAGGC TGAAGGGATC TTCAGGATCA 42711 || |||||||||| |||||||||| .......... .......... .......... ........GC TGAAGGGATC TTCAGGATCA 202 ATGCCGAAAA TGGCCAAGAA GAATTTGTCA GGGAGCAGCT AAATAGGGGG ATTATTCCAG 42651 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCGAAAA TGGCCAAGAA GAATTTGTCA GGGAGCAGCT AAATAGGGGG ATTATTCCAG 262 ATAACATTGA CGTCCATTGC TTAGCAGGTC TTATAAAGGT GATATTCTGC ACCTTGCTCT 42591 |||||||||| |||||||||| |||||||||| |||||||| ATAACATTGA CGTCCATTGC TTAGCAGGTC TTATAAAG.. .......... .......... 300 CGGAATATGT TTCATTCTAT GTTGCTCAGC CTCTCCAAAA ATGCTGCCGG TCCCGTTCAG 42531 .......... .......... .......... .......... .......... .......... 300 ATCCTCCAAA AAAGCACTAC TTTTAGAGGA TCTGACACAC ACTTGCGATA TTTTTGAAGA 42471 .......... .......... .......... .......... .......... .......... 300 GTCAGGGCGA CATAGATTCC ATTTGACATT TTTAGGTAAT TGTTGAGAGG AAATTATTTA 42411 .......... .......... .......... .......... .......... .......... 300 CTCGGATTGC AAGTTATCAA TATCTTCCCG TATCAGCTTT TGAGGCGAAA TTTCTCATTT 42351 .......... .......... .......... .......... .......... .......... 300 TGGAGGAAGT ATACTTCCTC AAAATTGCAT CTGAACTTGA ACTAAAATTT CTTATCTTCT 42291 .......... .......... .......... .......... .......... .......... 300 TCATTGATGA AGAAGGTACA TTGTTATGTT CTGATCAAGT TCAAAGAGTT CTTTCTCCTC 42231 .......... .......... .......... .......... .......... .......... 300 TCCCTATATG GACAGCAGTA GGAGATGGTT CTATTGACAT CAATATTTGT TTTCCTTATG 42171 .......... .......... .......... .......... .......... .......... 300 CATTTTATGA TTGTTTTGAT TTTTCATTAT ATCTGTATAT GGTAATTGAC GTAGAGTGAT 42111 .......... .......... .......... .......... .......... .......... 300 GATATTTTTA TAGGCTTGGT TCAGAGAGTT GCCAACGGGA GTTTTGGATT CTCTCTCGCC 42051 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GCTTGGT TCAGAGAGTT GCCAACGGGA GTTTTGGATT CTCTCTCGCC 347 AGAGGAAATT ATGCGTGCTC AATCGGAAGA AGAGTGTGTG CGGCTCGTGA GACTTCTTCC 41991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGAAATT ATGCGTGCTC AATCGGAAGA AGAGTGTGTG CGGCTCGTGA GACTTCTTCC 407 TCCAACTGAA GCTGCTCTAT TAGATTGGGC TATTAACTTG ATGGCTGATG TTGCTCAACT 41931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAACTGAA GCTGCTCTAT TAGATTGGGC TATTAACTTG ATGGCTGATG TTGCTCAACT 467 GGAAAGTTTT AACAAAATGA ATGCACGTAA TATCGCTATG GTGTTTGCTC CAAATATGAC 41871 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGTTTT AACAAAATGA ATGCACGTAA TATCGCTATG GTGTTTGCTC CAAATATGAC 527 AC 41869 || AC 529 hqPGS_C09HBa0168F14.1-1-_SGN-E207739+ (44630 44572,42992 42872,42732 42613,42097 41869) Total number of EST alignments reported: 56 ________________________________________________________________________________ Predicted gene locations (8) in segment 1 to 48358: PGL 1 (- strand): 1954 1834 AGS-1 (1954 1834) SCR (e 0.967) Exon 1 1954 1834 ( 121 n); score: 0.967 PGS (1954 1834) SGN-E313741+ 3-phase translation of AGS-1 (-strand): . . . . . . 1954 CCCACAAAGCGAGAGAGAGAGAGAAGAAATTTACTTTCAGAGAAACTAAAATTAGCTGTC P T K R E R E R R N L L S E K L K L A V P Q S E R E R E E I Y F Q R N - N - L S H K A R E R E K K F T F R E T K I S C . . . . . . 1894 GATTATCGCTTTTGCTTCAATAGTTGAAGAAGGAAAAAGGGTTCTCAATTTCTATCTCAG D Y R F C F N S - R R K K G S Q F L S Q I I A F A S I V E E G K R V L N F Y L R R L S L L L Q - L K K E K G F S I S I S . 1834 G Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1834 CCTGAGATAGAAATTGAGAACCCTTTTTCCTTCTTCAACTATTGAAGCAAAAGCGATAAT P E I E I E N P F S F F N Y - S K S D N L R - K L R T L F P S S T I E A K A I I - D R N - E P F F L L Q L L K Q K R - . . . . . . 1894 CGACAGCTAATTTTAGTTTCTCTGAAAGTAAATTTCTTCTCTCTCTCTCTCGCTTTGTGG R Q L I L V S L K V N F F S L S L A L W D S - F - F L - K - I S S L S L S L C G S T A N F S F S E S K F L L S L S R F V . 1954 G Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 6600 4882 AGS-1 (6600 6341,5245 4882) SCR (e 1.000 d 0.976 a 0.989,e 1.000) Exon 1 6600 6341 ( 260 n); score: 1.000 Intron 1 6340 5246 (1095 n); Pd: 0.976 Pa: 0.989 Exon 2 5245 4882 ( 364 n); score: 1.000 PGS (6598 6341,5245 4882) SGN-E340947+ PGS (6598 6341,5245 4885) SGN-E308527+ PGS (6590 6341,5245 4919) SGN-E318688+ PGS (6600 6341,5245 4934) SGN-E346024+ PGS (6600 6341,5245 4970) SGN-E309277+ PGS (6588 6341,5245 4984) SGN-E341807+ 3-phase translation of AGS-1 (-strand): . . . . . . 6600 AGACATGGACATGTCAAATCCTGCCGTCTTTGTCAATGCTGAGTTCCTCAAGGAGCATGT R H G H V K S C R L C Q C - V P Q G A C D M D M S N P A V F V N A E F L K E H V T W T C Q I L P S L S M L S S S R S M . . . . . . 6540 AGGACGGAAGGTTCGAACAGTGGTTCAGGTTATGCAATCTGATGGTGATAAAGTCATTGG R T E G S N S G S G Y A I - W - - S H W G R K V R T V V Q V M Q S D G D K V I G - D G R F E Q W F R L C N L M V I K S L . . . . . . 6480 AAAATCCACGGATGAAAAAGAATTAGTTGTGAAAGGAAATCCACCTAATGCTCTTTCAAC K I H G - K R I S C E R K S T - C S F N K S T D E K E L V V K G N P P N A L S T E N P R M K K N - L - K E I H L M L F Q . . . . . . 6420 TTTTGTTGAAGTAATTGGTATAGCTGACACTATCCAGTCTATTGAAGCAGAAATTTGGAC F C - S N W Y S - H Y P V Y - S R N L D F V E V I G I A D T I Q S I E A E I W T L L L K - L V - L T L S S L L K Q K F G . . : . . . . 6360 CAATTTTGGTGATACATTTG : ATGTTAATAGCTATGACAAGGTGTGCAGACTAGCAAATGG Q F W - Y I - : C - - L - Q G V Q T S K W N F G D T F : D V N S Y D K V C R L A N G P I L V I H L : M L I A M T R C A D - Q M . . . . . . 5205 TGACAGTAAGCACTTGTTTATCTGAGAAATGATTTATAAAAGAGGACATATATCCTCTTA - Q - A L V Y L R N D L - K R T Y I L L D S K H L F I - E M I Y K R G H I S S Y V T V S T C L S E K - F I K E D I Y P L . . . . . . 5145 TTTCTGCTGCATTGTTCCAGAGTTTCAATGTATTATAAGTAGTTTGAAGTACTCCTGAAA F L L H C S R V S M Y Y K - F E V L L K F C C I V P E F Q C I I S S L K Y S - K I S A A L F Q S F N V L - V V - S T P E . . . . . . 5085 ACTTTGGATTTTCAGCTTCTATTTAGGGTTTCATCAACAGAAGTTAAGCTCTGTGCTTAG T L D F Q L L F R V S S T E V K L C A - L W I F S F Y L G F H Q Q K L S S V L R N F G F S A S I - G F I N R S - A L C L . . . . . . 5025 ATGTAAACTTGTTTTTCTTCAACTTATGCTATTTGGTATTTTGAACACTAATATTTGTGG M - T C F S S T Y A I W Y F E H - Y L W C K L V F L Q L M L F G I L N T N I C G D V N L F F F N L C Y L V F - T L I F V . . . . . . 4965 TTCCACTAGTTAGTCAACTTGGCATTAAACTAGCTGTGTTACATACATAAGTTGTAACTT F H - L V N L A L N - L C Y I H K L - L S T S - S T W H - T S C V T Y I S C N L V P L V S Q L G I K L A V L H T - V V T . . . 4905 GTAAGTATGAACTATGTCTAGTTC V S M N Y V - F - V - T M S S C K Y E L C L V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-2_AGS-1_PPS_1 (6599 6341,5245 5181) (frame '2'; 321 bp, 107 residues) 1 DMDMSNPAVF VNAEFLKEHV GRKVRTVVQV MQSDGDKVIG KSTDEKELVV KGNPPNALST 61 FVEVIGIADT IQSIEAEIWT NFGDTFDVNS YDKVCRLANG DSKHLFI- PGL 3 (- strand): 7535 6947 AGS-1 (7535 6947) SCR (e 0.995) Exon 1 7535 6947 ( 589 n); score: 0.995 PGS (7535 6947) SGN-E325549+ 3-phase translation of AGS-1 (-strand): . . . . . . 7535 GTTTGTGTGTTTACTGGTTTTGATTTTGAACCCTTCAGTTTTGTTTTAATAATGAGTTTT V C V F T G F D F E P F S F V L I M S F F V C L L V L I L N P S V L F - - - V F L C V Y W F - F - T L Q F C F N N E F . . . . . . 7475 TGTTTCCCGGTGTCTACCCATAATTTTCTGTGTAGAGATTTCCCTGATTTACATTTAATA C F P V S T H N F L C R D F P D L H L I V S R C L P I I F C V E I S L I Y I - - L F P G V Y P - F S V - R F P - F T F N . . . . . . 7415 GTGTATCAAGTTGCTACACAAAATTGTGATAAATAGATCTTTTCTTTTTTTTAATGATTT V Y Q V A T Q N C D K - I F S F F - - F C I K L L H K I V I N R S F L F F N D L S V S S C Y T K L - - I D L F F F L M I . . . . . . 7355 GGGTTGTTACACTTTGTTCATTTGTGTAATTGGTTTTGTACTTTCTGTAATTATGGGTAA G L L H F V H L C N W F C T F C N Y G - G C Y T L F I C V I G F V L S V I M G N W V V T L C S F V - L V L Y F L - L W V . . . . . . 7295 TGAAAAATCAAGGTTCTTGGAAGTGTTTTGCAATTTTTTTTAAAAAAAAAATCCTTGAAA - K I K V L G S V L Q F F L K K K S L K E K S R F L E V F C N F F - K K N P - K M K N Q G S W K C F A I F F K K K I L E . . . . . . 7235 AAAATGCAGTCAATGGTAAATTATGATTCCCAAATGATATCTATGTCATTCTTTGAACAA K M Q S M V N Y D S Q M I S M S F F E Q K C S Q W - I M I P K - Y L C H S L N N K N A V N G K L - F P N D I Y V I L - T . . . . . . 7175 TGGAATCTATTGAGGTAATGGTTTGATGTAAAATATGATGTTAGAAGTTTTAGCGGGTTA W N L L R - W F D V K Y D V R S F S G L G I Y - G N G L M - N M M L E V L A G - M E S I E V M V - C K I - C - K F - R V . . . . . . 7115 GAATTGTTTAATCTTGTTTAGTAGATGCGTACTGTGCATGTTCGATGATGGATGTGATTG E L F N L V - - M R T V H V R - W M - L N C L I L F S R C V L C M F D D G C D C R I V - S C L V D A Y C A C S M M D V I . . . . . . 7055 TTTTTATATAAGCAACTGTTAATAGTATTGTCGTATTCTGATTTTCGATGGTGTAAGAAA F L Y K Q L L I V L S Y S D F R W C K K F Y I S N C - - Y C R I L I F D G V R N V F I - A T V N S I V V F - F S M V - E . . . . . 6995 CTTTAACTCACAGGCTTCTGATTTGTTGTCTTTTAAAGTTTTAATTGCA L - L T G F - F V V F - S F N C F N S Q A S D L L S F K V L I A T L T H R L L I C C L L K F - L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 6947 TGCAATTAAAACTTTAAAAGACAACAAATCAGAAGCCTGTGAGTTAAAGTTTCTTACACC C N - N F K R Q Q I R S L - V K V S Y T A I K T L K D N K S E A C E L K F L T P Q L K L - K T T N Q K P V S - S F L H . . . . . . 7007 ATCGAAAATCAGAATACGACAATACTATTAACAGTTGCTTATATAAAAACAATCACATCC I E N Q N T T I L L T V A Y I K T I T S S K I R I R Q Y Y - Q L L I - K Q S H P H R K S E Y D N T I N S C L Y K N N H I . . . . . . 7067 ATCATCGAACATGCACAGTACGCATCTACTAAACAAGATTAAACAATTCTAACCCGCTAA I I E H A Q Y A S T K Q D - T I L T R - S S N M H S T H L L N K I K Q F - P A K H H R T C T V R I Y - T R L N N S N P L . . . . . . 7127 AACTTCTAACATCATATTTTACATCAAACCATTACCTCAATAGATTCCATTGTTCAAAGA N F - H H I L H Q T I T S I D S I V Q R T S N I I F Y I K P L P Q - I P L F K E K L L T S Y F T S N H Y L N R F H C S K . . . . . . 7187 ATGACATAGATATCATTTGGGAATCATAATTTACCATTGACTGCATTTTTTTCAAGGATT M T - I S F G N H N L P L T A F F S R I - H R Y H L G I I I Y H - L H F F Q G F N D I D I I W E S - F T I D C I F F K D . . . . . . 7247 TTTTTTTTAAAAAAAATTGCAAAACACTTCCAAGAACCTTGATTTTTCATTACCCATAAT F F L K K I A K H F Q E P - F F I T H N F F - K K L Q N T S K N L D F S L P I I F F F K K N C K T L P R T L I F H Y P - . . . . . . 7307 TACAGAAAGTACAAAACCAATTACACAAATGAACAAAGTGTAACAACCCAAATCATTAAA Y R K Y K T N Y T N E Q S V T T Q I I K T E S T K P I T Q M N K V - Q P K S L K L Q K V Q N Q L H K - T K C N N P N H - . . . . . . 7367 AAAAAGAAAAGATCTATTTATCACAATTTTGTGTAGCAACTTGATACACTATTAAATGTA K K K R S I Y H N F V - Q L D T L L N V K R K D L F I T I L C S N L I H Y - M - K K E K I Y L S Q F C V A T - Y T I K C . . . . . . 7427 AATCAGGGAAATCTCTACACAGAAAATTATGGGTAGACACCGGGAAACAAAAACTCATTA N Q G N L Y T E N Y G - T P G N K N S L I R E I S T Q K I M G R H R E T K T H Y K S G K S L H R K L W V D T G K Q K L I . . . . . 7487 TTAAAACAAAACTGAAGGGTTCAAAATCAAAACCAGTAAACACACAAAC L K Q N - R V Q N Q N Q - T H K - N K T E G F K I K T S K H T N I K T K L K G S K S K P V N T Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 11298 11048 AGS-1 (11298 11048) SCR (e 0.819) Exon 1 11298 11048 ( 251 n); score: 0.819 PGS (11298 11048) SGN-E545742- PGS (11298 11179) SGN-E249673+ 3-phase translation of AGS-1 (-strand): . . . . . . 11298 TGTTAGACAATTGACATTTTTCCAGCTTATTATTATTTTTACTGTTTTTACTTATTTTAG C - T I D I F P A Y Y Y F Y C F Y L F - V R Q L T F F Q L I I I F T V F T Y F S L D N - H F S S L L L F L L F L L I L . . . . . . 11238 TTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG F S A S Y F L A R L S Q L - L L N F L K L V L P I F - L D L V N F S C S T F - S V - C F L F S S - T - S T L V A Q L S E . . . . . . 11178 TTAGTGGCGCGGTCAGTGGCCCCCTTTTATGGTAGTTAGTAGCACATGTTTTATTTAGTT L V A R S V A P F Y G S - - H M F Y L V - W R G Q W P P F M V V S S T C F I - F V S G A V S G P L L W - L V A H V L F S . . . . . . 11118 TTAATGTTTATGTTTTTTCCTTGTATAAATTCCGACTTTCTGCAGATTAATATACATAAG L M F M F F P C I N S D F L Q I N I H K - C L C F F L V - I P T F C R L I Y I R F N V Y V F S L Y K F R L S A D - Y T - . . 11058 GAATTTCATAA E F H N F I G I S - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 11048 TTATGAAATTCCTTATGTATATTAATCTGCAGAAAGTCGGAATTTATACAAGGAAAAAAC L - N S L C I L I C R K S E F I Q G K N Y E I P Y V Y - S A E S R N L Y K E K T M K F L M Y I N L Q K V G I Y T R K K . . . . . . 11108 ATAAACATTAAAACTAAATAAAACATGTGCTACTAACTACCATAAAAGGGGGCCACTGAC I N I K T K - N M C Y - L P - K G A T D - T L K L N K T C A T N Y H K R G P L T H K H - N - I K H V L L T T I K G G H - . . . . . . 11168 CGCGCCACTAACTTCAGAAAGTTGAGCAACTAAAGTTGACTAAGTCTAGCTAGAAAATAG R A T N F R K L S N - S - L S L A R K - A P L T S E S - A T K V D - V - L E N R P R H - L Q K V E Q L K L T K S S - K I . . . . . . 11228 GAAGCACTAAACTAAAATAAGTAAAAACAGTAAAAATAATAATAAGCTGGAAAAATGTCA E A L N - N K - K Q - K - - - A G K M S K H - T K I S K N S K N N N K L E K C Q G S T K L K - V K T V K I I I S W K N V . . 11288 ATTGTCTAACA I V - L S N N C L T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (+ strand): 14513 18264 AGS-1 (14513 14533,15221 15240,17671 18102) SCR (e 0.714 d 0.000 a 0.253,e 0.525 d 0.856 a 0.995,e 0.819) Exon 1 14513 14533 ( 21 n); score: 0.714 Intron 1 14534 15220 ( 687 n); Pd: 0.000 Pa: 0.253 Exon 2 15221 15240 ( 20 n); score: 0.525 Intron 2 15241 17670 (2430 n); Pd: 0.856 Pa: 0.995 Exon 3 17671 18102 ( 432 n); score: 0.819 PGS (14513 14533,15221 15240,17671 17937) SGN-E553887+ PGS (17671 18102) SGN-E250289+ 3-phase translation of AGS-1 (+strand): . . . : . . : . 14513 TGTGCTGCTTGATTCTTATCC : TCGCAGATAGATCAGCAAAA : ACATGCCAAGGACTTGGGC C A A - F L S : S Q I D Q Q K : H A K D L G V L L D S Y P : R R - I S K : N M P R T W A C C L I L I : L A D R S A K : T C Q G L G . . . . . . 17690 ATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCAAGGTGCTTGGGTGT I G L G M D D G K T V Q H K F K V L G C L V L A W M M A K Q Y N T S S R C L G V H W S W H G - W Q N S T T Q V Q G A W V . . . . . . 17750 TGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGCGTTGGCAAGACAGC W Q G S L N V H G L R A G - R R W Q D S G K A A - T C M D Y V R A K G V G K T A L A R Q L E R A W I T C G L K A L A R Q . . . . . . 17810 ATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTC M L T - - S K A V K T W Q G Q R Q R Q F C - L D E A R L - R L G K V K D K G S S H V D L M K Q G C E D L A R S K T K A V . . . . . . 17870 ACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGG T R N C R N K T K C G R Q L K Y S K C W P E I A E I K L S V E D S - N I L S V G H P K L P K - N - V W K T A K I F - V L . . . . . . 17930 AAGCTGGCAGGATTATTCTAAGTGTTGGAATGAAGCCTGAAATATTCTAAGTGTTAGAAT K L A G L F - V L E - S L K Y S K C - N S W Q D Y S K C W N E A - N I L S V R I E A G R I I L S V G M K P E I F - V L E . . . . . . 17990 ATTAGTATTTCGTGTAGATAAGAATGTAATTTGAATTAGATTCTATCTGTTGGAAATATA I S I S C R - E C N L N - I L S V G N I L V F R V D K N V I - I R F Y L L E I - Y - Y F V - I R M - F E L D S I C W K Y . . . . . . 18050 GCTGTTGGAAAGTTAGTTTTGAACTCTGGGCTGACATGTGTCGGACAGGTGTC A V G K L V L N S G L T C V G Q V L L E S - F - T L G - H V S D R C S C W K V S F E L W A D M C R T G V Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (17616 18264) SCR (e 0.961) Exon 1 17616 18264 ( 649 n); score: 0.961 PGS (17616 18264) SGN-E543846- PGS (17616 18163) SGN-E542260+ PGS (17616 17909) SGN-E371397+ PGS (17616 17727) SGN-E271373+ PGS (17619 18264) SGN-E371396- PGS (17642 17931) SGN-E213783+ PGS (17643 17817) SGN-E207313+ 3-phase translation of AGS-2 (+strand): . . . . . . 17616 TTCTTGTTATTTGGTTTTGTTAGACCCGCAATCTACTTGATATAACTACGTGCAGACATG F L L F G F V R P A I Y L I - L R A D M S C Y L V L L D P Q S T - Y N Y V Q T C L V I W F C - T R N L L D I T T C R H . . . . . . 17676 CCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTACAACACAAGTTCA P R T W A L V L A W M M A K Q Y N T S S Q G L G H W S W H G - W Q N S T T Q V Q A K D L G I G L G M D D G K T V Q H K F . . . . . . 17736 AGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGATTACGTGCGGGCTAAAGGC R C L G V G K A A - T C M D Y V R A K G G A W V L A R Q L E R A W I T C G L K A K V L G C W Q G S L N V H G L R A G - R . . . . . . 17796 GTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAA V G K T A C - L D E A R L - R L G K V K L A R Q H V D L M K Q G C E D L A R S K R W Q D S M L T - - S K A V K T W Q G Q . . . . . . 17856 GACAAAGGCAGTTCACCCGAAATTGCCGAAATAAAACTAAGTGTGGAAGACAGCTAAAAT D K G S S P E I A E I K L S V E D S - N T K A V H P K L P K - N - V W K T A K I R Q R Q F T R N C R N K T K C G R Q L K . . . . . . 17916 ATTCTAAGTGTTGGAAGCTGGCAGGATTATTCTAAGTGTTGGAATGAAGCCTGAAATATT I L S V G S W Q D Y S K C W N E A - N I F - V L E A G R I I L S V G M K P E I F Y S K C W K L A G L F - V L E - S L K Y . . . . . . 17976 CTAAGTGTTAGAATATTAGTATTTCGTGTAGATAAGAATGTAATTTGAATTAGATTCTAT L S V R I L V F R V D K N V I - I R F Y - V L E Y - Y F V - I R M - F E L D S I S K C - N I S I S C R - E C N L N - I L . . . . . . 18036 CTGTTGGAAATATAGCTGTTGGAAAGTTAGTTTTGAACTCTGGGCTGACATGTGTCGGAC L L E I - L L E S - F - T L G - H V S D C W K Y S C W K V S F E L W A D M C R T S V G N I A V G K L V L N S G L T C V G . . . . . . 18096 AGGTGTCATGTGTAACCGCCGCATGTAACTGCCATTGTGCAGAATTTTGATTTAAGGTGG R C H V - P P H V T A I V Q N F D L R W G V M C N R R M - L P L C R I L I - G G Q V S C V T A A C N C H C A E F - F K V . . . . . . 18156 AAATTCGTCTAAGGCAGGGGACAGAGAGTTTTCTAGCCTTAGACTGATTTGTGAAGCCTT K F V - G R G Q R V F - P - T D L - S L N S S K A G D R E F S S L R L I C E A F E I R L R Q G T E S F L A L D - F V K P . . . . . 18216 CCTTTGTATTAATTATCGATTAATAAAGGTTGGGACTTGTTCCTGTAAA P L Y - L S I N K G W D L F L - L C I N Y R L I K V G T C S C K S F V L I I D - - R L G L V P V Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 18264 TTTACAGGAACAAGTCCCAACCTTTATTAATCGATAATTAATACAAAGGAAGGCTTCACA F T G T S P N L Y - S I I N T K E G F T L Q E Q V P T F I N R - L I Q R K A S Q Y R N K S Q P L L I D N - Y K G R L H . . . . . . 18204 AATCAGTCTAAGGCTAGAAAACTCTCTGTCCCCTGCCTTAGACGAATTTCCACCTTAAAT N Q S K A R K L S V P C L R R I S T L N I S L R L E N S L S P A L D E F P P - I K S V - G - K T L C P L P - T N F H L K . . . . . . 18144 CAAAATTCTGCACAATGGCAGTTACATGCGGCGGTTACACATGACACCTGTCCGACACAT Q N S A Q W Q L H A A V T H D T C P T H K I L H N G S Y M R R L H M T P V R H M S K F C T M A V T C G G Y T - H L S D T . . . . . . 18084 GTCAGCCCAGAGTTCAAAACTAACTTTCCAACAGCTATATTTCCAACAGATAGAATCTAA V S P E F K T N F P T A I F P T D R I - S A Q S S K L T F Q Q L Y F Q Q I E S N C Q P R V Q N - L S N S Y I S N R - N L . . . . . . 18024 TTCAAATTACATTCTTATCTACACGAAATACTAATATTCTAACACTTAGAATATTTCAGG F K L H S Y L H E I L I F - H L E Y F R S N Y I L I Y T K Y - Y S N T - N I S G I Q I T F L S T R N T N I L T L R I F Q . . . . . . 17964 CTTCATTCCAACACTTAGAATAATCCTGCCAGCTTCCAACACTTAGAATATTTTAGCTGT L H S N T - N N P A S F Q H L E Y F S C F I P T L R I I L P A S N T - N I L A V A S F Q H L E - S C Q L P T L R I F - L . . . . . . 17904 CTTCCACACTTAGTTTTATTTCGGCAATTTCGGGTGAACTGCCTTTGTCTTTGACCTTGC L P H L V L F R Q F R V N C L C L - P C F H T - F Y F G N F G - T A F V F D L A S S T L S F I S A I S G E L P L S L T L . . . . . . 17844 CAAGTCTTCACAGCCTTGCTTCATCAAGTCAACATGCTGTCTTGCCAACGCCTTTAGCCC Q V F T A L L H Q V N M L S C Q R L - P K S S Q P C F I K S T C C L A N A F S P P S L H S L A S S S Q H A V L P T P L A . . . . . . 17784 GCACGTAATCCATGCACGTTCAAGCTGCCTTGCCAACACCCAAGCACCTTGAACTTGTGT A R N P C T F K L P C Q H P S T L N L C H V I H A R S S C L A N T Q A P - T C V R T - S M H V Q A A L P T P K H L E L V . . . . . . 17724 TGTACTGTTTTGCCATCATCCATGCCAAGACCAATGCCCAAGTCCTTGGCATGTCTGCAC C T V L P S S M P R P M P K S L A C L H V L F C H H P C Q D Q C P S P W H V C T L Y C F A I I H A K T N A Q V L G M S A . . . . . 17664 GTAGTTATATCAAGTAGATTGCGGGTCTAACAAAACCAAATAACAAGAA V V I S S R L R V - Q N Q I T R - L Y Q V D C G S N K T K - Q E R S Y I K - I A G L T K P N N K Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-5_AGS-2_PPS_1 (18234 18025) (frame '1'; 207 bp, 69 residues) 1 SIINTKEGFT NQSKARKLSV PCLRRISTLN QNSAQWQLHA AVTHDTCPTH VSPEFKTNFP 61 TAIFPTDRI- PGL 6 (- strand): 20904 18935 AGS-1 (19171 18935) SCR (e 0.966) Exon 1 19171 18935 ( 237 n); score: 0.966 PGS (19171 18935) SGN-E397827- 3-phase translation of AGS-1 (-strand): . . . . . . 19171 GTTAAAGATGCATATGAATGCTTTAATCATGAAGAAGATCTGGATGTCCCTGCAAGTATT V K D A Y E C F N H E E D L D V P A S I L K M H M N A L I M K K I W M S L Q V L - R C I - M L - S - R R S G C P C K Y . . . . . . 19111 GATGTTTTTGGTGTATTTCAACTCCAAATTACTCCTCCCAACTATAAGCTAGATGTTTGT D V F G V F Q L Q I T P P N Y K L D V C M F L V Y F N S K L L L P T I S - M F V - C F W C I S T P N Y S S Q L - A R C L . . . . . . 19051 GTAACTTATTTAGGTTGATGAACAACTTAAGTCATGTAAATTACTTGATCTCTTTTGTAA V T Y L G - - T T - V M - I T - S L L - - L I - V D E Q L K S C K L L D L F C N C N L F R L M N N L S H V N Y L I S F V . . . . . . 18991 CTTTTGCATCTTCATGATGTTTTTCTCAATAAAACTTACTTATTTCATCAAAGAGAA L L H L H D V F L N K T Y L F H Q R E F C I F M M F F S I K L T Y F I K E T F A S S - C F S Q - N L L I S S K R Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 18935 TTCTCTTTGATGAAATAAGTAAGTTTTATTGAGAAAAACATCATGAAGATGCAAAAGTTA F S L M K - V S F I E K N I M K M Q K L S L - - N K - V L L R K T S - R C K S Y L F D E I S K F Y - E K H H E D A K V . . . . . . 18995 CAAAAGAGATCAAGTAATTTACATGACTTAAGTTGTTCATCAACCTAAATAAGTTACACA Q K R S S N L H D L S C S S T - I S Y T K R D Q V I Y M T - V V H Q P K - V T Q T K E I K - F T - L K L F I N L N K L H . . . . . . 19055 AACATCTAGCTTATAGTTGGGAGGAGTAATTTGGAGTTGAAATACACCAAAAACATCAAT N I - L I V G R S N L E L K Y T K N I N T S S L - L G G V I W S - N T P K T S I K H L A Y S W E E - F G V E I H Q K H Q . . . . . . 19115 ACTTGCAGGGACATCCAGATCTTCTTCATGATTAAAGCATTCATATGCATCTTTAAC T C R D I Q I F F M I K A F I C I F N L A G T S R S S S - L K H S Y A S L Y L Q G H P D L L H D - S I H M H L - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (20196 19367) SCR (e 0.997) Exon 1 20196 19367 ( 830 n); score: 0.997 PGS (19968 19367) SGN-E244981+ PGS (20196 19727) SGN-E254305+ PGS (20174 19823) SGN-E239931+ 3-phase translation of AGS-2 (-strand): . . . . . . 20196 TGGCAAAGGATATGATCATAGAGAATCTCTTGTCTATAGAAGTTGTTCACATCTTATTTT W Q R I - S - R I S C L - K L F T S Y F G K G Y D H R E S L V Y R S C S H L I F A K D M I I E N L L S I E V V H I L F . . . . . . 20136 TTTATTCAGACGATGTAATAAAAGAAATTGGAATGCGTTTGCATAAGGTGTTCAAGAATG F I Q T M - - K K L E C V C I R C S R M L F R R C N K R N W N A F A - G V Q E C F Y S D D V I K E I G M R L H K V F K N . . . . . . 20076 TCGCTTCTACATCAGCTTTGAAATTATGCAAAGGTTCTGTTGTTGGTTTGTATAGTGTAT S L L H Q L - N Y A K V L L L V C I V Y R F Y I S F E I M Q R F C C W F V - C I V A S T S A L K L C K G S V V G L Y S V . . . . . . 20016 TTCATGGAGTAAGAAACTTCCCGGTCACGTTTTATAAGCTCAAGTCCTTAAAATTGGCAG F M E - E T S R S R F I S S S P - N W Q S W S K K L P G H V L - A Q V L K I G S F H G V R N F P V T F Y K L K S L K L A . . . . . . 19956 TGGCAATTGACGAATCTTGCATGGAAATCATGATGCTATTGCTCAAGCATTCTCCTAATT W Q L T N L A W K S - C Y C S S I L L I G N - R I L H G N H D A I A Q A F S - F V A I D E S C M E I M M L L L K H S P N . . . . . . 19896 TAGAGGTTCTTAATTTGTTTTCTGATGAGAATTACGGTTGGGATGAAAACTGGAAGTTCC - R F L I C F L M R I T V G M K T G S S R G S - F V F - - E L R L G - K L E V P L E V L N L F S D E N Y G W D E N W K F . . . . . . 19836 ATGATCCTAGTGAAAGCGTTTTGTGCCTGGAGTCTCATCTAAAGTTGATTCAGTTGGCTG M I L V K A F C A W S L I - S - F S W L - S - - K R F V P G V S S K V D S V G W H D P S E S V L C L E S H L K L I Q L A . . . . . . 19776 GTTTCAAAAATGAAGATAAAGAGATAGAGCTACTGAGGTTTTTCCTCAAGAATGCACAAG V S K M K I K R - S Y - G F S S R M H K F Q K - R - R D R A T E V F P Q E C T S G F K N E D K E I E L L R F F L K N A Q . . . . . . 19716 TATTAGAAGAACTGATAATTGTTTGGGATAGCTGTAGTGGCATATCAGAAGAGGCAATAG Y - K N - - L F G I A V V A Y Q K R Q - I R R T D N C L G - L - W H I R R G N R V L E E L I I V W D S C S G I S E E A I . . . . . . 19656 AGGAGGTTTCCAACTTTCCTAGAGCTTCTTCACATGTTGTTGTCTCATTTCTTAATTTCA R R F P T F L E L L H M L L S H F L I S G G F Q L S - S F F T C C C L I S - F Q E E V S N F P R A S S H V V V S F L N F . . . . . . 19596 AACCCAAATCAAGATCTCGTTACCGGGACAATTCAGTTTAAAAGAGGTTCTGATTGTGAG N P N Q D L V T G T I Q F K R G S D C E T Q I K I S L P G Q F S L K E V L I V R K P K S R S R Y R D N S V - K R F - L - . . . . . . 19536 ACGCTATGTTGCTTGGACTTGGACTCTCCAAAAATGTTGTACTACTTTTGGAAGGTCCGA T L C C L D L D S P K M L Y Y F W K V R R Y V A W T W T L Q K C C T T F G R S D D A M L L G L G L S K N V V L L L E G P . . . . . . 19476 CATACATTTGAAGTGTCCAAGTAACATAGGTTAGAAGTACCCTTTTTGGGAACTAGTGCA H T F E V S K - H R L E V P F L G T S A I H L K C P S N I G - K Y P F W E L V H T Y I - S V Q V T - V R S T L F G N - C . . . . . 19416 TGAGCAAGCACATGAAGCCTTAACGAATTTCTACTACTGTTTCGCCTTTT - A S T - S L N E F L L L F R L E Q A H E A L T N F Y Y C F A F M S K H M K P - R I S T T V S P F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-6_AGS-2_PPS_1 (20194 19556) (frame '0'; 636 bp, 212 residues) 1 AKDMIIENLL SIEVVHILFF YSDDVIKEIG MRLHKVFKNV ASTSALKLCK GSVVGLYSVF 61 HGVRNFPVTF YKLKSLKLAV AIDESCMEIM MLLLKHSPNL EVLNLFSDEN YGWDENWKFH 121 DPSESVLCLE SHLKLIQLAG FKNEDKEIEL LRFFLKNAQV LEELIIVWDS CSGISEEAIE 181 EVSNFPRASS HVVVSFLNFK PKSRSRYRDN SV- 3-phase translation of AGS-2 (+strand): . . . . . . 19367 AAAAGGCGAAACAGTAGTAGAAATTCGTTAAGGCTTCATGTGCTTGCTCATGCACTAGTT K R R N S S R N S L R L H V L A H A L V K G E T V V E I R - G F M C L L M H - F K A K Q - - K F V K A S C A C S C T S . . . . . . 19427 CCCAAAAAGGGTACTTCTAACCTATGTTACTTGGACACTTCAAATGTATGTCGGACCTTC P K K G T S N L C Y L D T S N V C R T F P K R V L L T Y V T W T L Q M Y V G P S S Q K G Y F - P M L L G H F K C M S D L . . . . . . 19487 CAAAAGTAGTACAACATTTTTGGAGAGTCCAAGTCCAAGCAACATAGCGTCTCACAATCA Q K - Y N I F G E S K S K Q H S V S Q S K S S T T F L E S P S P S N I A S H N Q P K V V Q H F W R V Q V Q A T - R L T I . . . . . . 19547 GAACCTCTTTTAAACTGAATTGTCCCGGTAACGAGATCTTGATTTGGGTTTGAAATTAAG E P L L N - I V P V T R S - F G F E I K N L F - T E L S R - R D L D L G L K L R R T S F K L N C P G N E I L I W V - N - . . . . . . 19607 AAATGAGACAACAACATGTGAAGAAGCTCTAGGAAAGTTGGAAACCTCCTCTATTGCCTC K - D N N M - R S S R K V G N L L Y C L N E T T T C E E A L G K L E T S S I A S E M R Q Q H V K K L - E S W K P P L L P . . . . . . 19667 TTCTGATATGCCACTACAGCTATCCCAAACAATTATCAGTTCTTCTAATACTTGTGCATT F - Y A T T A I P N N Y Q F F - Y L C I S D M P L Q L S Q T I I S S S N T C A F L L I C H Y S Y P K Q L S V L L I L V H . . . . . . 19727 CTTGAGGAAAAACCTCAGTAGCTCTATCTCTTTATCTTCATTTTTGAAACCAGCCAACTG L E E K P Q - L Y L F I F I F E T S Q L L R K N L S S S I S L S S F L K P A N - S - G K T S V A L S L Y L H F - N Q P T . . . . . . 19787 AATCAACTTTAGATGAGACTCCAGGCACAAAACGCTTTCACTAGGATCATGGAACTTCCA N Q L - M R L Q A Q N A F T R I M E L P I N F R - D S R H K T L S L G S W N F Q E S T L D E T P G T K R F H - D H G T S . . . . . . 19847 GTTTTCATCCCAACCGTAATTCTCATCAGAAAACAAATTAAGAACCTCTAAATTAGGAGA V F I P T V I L I R K Q I K N L - I R R F S S Q P - F S S E N K L R T S K L G E S F H P N R N S H Q K T N - E P L N - E . . . . . . 19907 ATGCTTGAGCAATAGCATCATGATTTCCATGCAAGATTCGTCAATTGCCACTGCCAATTT M L E Q - H H D F H A R F V N C H C Q F C L S N S I M I S M Q D S S I A T A N F N A - A I A S - F P C K I R Q L P L P I . . . . . . 19967 TAAGGACTTGAGCTTATAAAACGTGACCGGGAAGTTTCTTACTCCATGAAATACACTATA - G L E L I K R D R E V S Y S M K Y T I K D L S L - N V T G K F L T P - N T L Y L R T - A Y K T - P G S F L L H E I H Y . . . . . . 20027 CAAACCAACAACAGAACCTTTGCATAATTTCAAAGCTGATGTAGAAGCGACATTCTTGAA Q T N N R T F A - F Q S - C R S D I L E K P T T E P L H N F K A D V E A T F L N T N Q Q Q N L C I I S K L M - K R H S - . . . . . . 20087 CACCTTATGCAAACGCATTCCAATTTCTTTTATTACATCGTCTGAATAAAAAAATAAGAT H L M Q T H S N F F Y Y I V - I K K - D T L C K R I P I S F I T S S E - K N K M T P Y A N A F Q F L L L H R L N K K I R . . . . . 20147 GTGAACAACTTCTATAGACAAGAGATTCTCTATGATCATATCCTTTGCCA V N N F Y R Q E I L Y D H I L C - T T S I D K R F S M I I S F A C E Q L L - T R D S L - S Y P L P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1+_PGL-6_AGS-2_PPS_1 (19578 19787) (frame '2'; 207 bp, 69 residues) 1 RDLDLGLKLR NETTTCEEAL GKLETSSIAS SDMPLQLSQT IISSSNTCAF LRKNLSSSIS 61 LSSFLKPAN- AGS-3 (20904 20378) SCR (e 0.998) Exon 1 20904 20378 ( 527 n); score: 0.998 PGS (20904 20378) SGN-E391824+ PGS (20902 20404) SGN-E246727+ 3-phase translation of AGS-3 (-strand): . . . . . . 20904 ATTTGCCGGATGATATACTGCACAATATACTTTCATATCTGTACATCTTTGATGTTGTTC I C R M I Y C T I Y F H I C T S L M L F F A G - Y T A Q Y T F I S V H L - C C S L P D D I L H N I L S Y L Y I F D V V . . . . . . 20844 AGCTAAGCATTTTATCGAAAAGATGGAACTATATATGGAGGACAATGCCTTACTTGAATT S - A F Y R K D G T I Y G G Q C L T - I A K H F I E K M E L Y M E D N A L L E F Q L S I L S K R W N Y I W R T M P Y L N . . . . . . 20784 TTGATATTAATAGCTTTGGTTGTGAAAGGATTGATAGGCTTTGGGATATGGGTATGGCTG L I L I A L V V K G L I G F G I W V W L - Y - - L W L - K D - - A L G Y G Y G - F D I N S F G C E R I D R L W D M G M A . . . . . . 20724 AGAAATTCAAAGATTTTATCAATTGGGTGTTGATTAACCGATGTGGGGATAGCCTTGTTT R N S K I L S I G C - L T D V G I A L F E I Q R F Y Q L G V D - P M W G - P C L E K F K D F I N W V L I N R C G D S L V . . . . . . 20664 GTTTTAAGCTTTGTTGTGGGGATATTTTTGGTAAAAGGGCTATTTTTCGATGGGTTCGTG V L S F V V G I F L V K G L F F D G F V F - A L L W G Y F W - K G Y F S M G S C C F K L C C G D I F G K R A I F R W V R . . . . . . 20604 TTGTGACAGCTCGAAATGTTCAAGAACTCGTGTTAGATTTTTGTCCTGCTGAGCCATTTG L - Q L E M F K N S C - I F V L L S H L C D S S K C S R T R V R F L S C - A I - V V T A R N V Q E L V L D F C P A E P F . . . . . . 20544 AGTTGCCATATTGTGTTGTGACTTGTGAATCCTTGCGAGTTTTGAAATTACGGCTTGATG S C H I V L - L V N P C E F - N Y G L M V A I L C C D L - I L A S F E I T A - W E L P Y C V V T C E S L R V L K L R L D . . . . . . 20484 GGTCTGTACTTAAGTTGTCTAATCATTTTGGATTTCATCAGCTTAAATTTCTTCATCTTG G L Y L S C L I I L D F I S L N F F I L V C T - V V - S F W I S S A - I S S S - G S V L K L S N H F G F H Q L K F L H L . . . . . 20424 AAAAAGTTGAGTTATCAAACGAGCATTTGACGAGTTGCTTGTTCTCA K K L S Y Q T S I - R V A C S K S - V I K R A F D E L L V L E K V E L S N E H L T S C L F S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-6_AGS-3_PPS_1 (20902 20378) (frame '0'; 525 bp, 175 residues) 1 LPDDILHNIL SYLYIFDVVQ LSILSKRWNY IWRTMPYLNF DINSFGCERI DRLWDMGMAE 61 KFKDFINWVL INRCGDSLVC FKLCCGDIFG KRAIFRWVRV VTARNVQELV LDFCPAEPFE 121 LPYCVVTCES LRVLKLRLDG SVLKLSNHFG FHQLKFLHLE KVELSNEHLT SCLFS 3-phase translation of AGS-3 (+strand): . . . . . . 20378 TGAGAACAAGCAACTCGTCAAATGCTCGTTTGATAACTCAACTTTTTCAAGATGAAGAAA - E Q A T R Q M L V - - L N F F K M K K E N K Q L V K C S F D N S T F S R - R N R T S N S S N A R L I T Q L F Q D E E . . . . . . 20438 TTTAAGCTGATGAAATCCAAAATGATTAGACAACTTAAGTACAGACCCATCAAGCCGTAA F K L M K S K M I R Q L K Y R P I K P - L S - - N P K - L D N L S T D P S S R N I - A D E I Q N D - T T - V Q T H Q A V . . . . . . 20498 TTTCAAAACTCGCAAGGATTCACAAGTCACAACACAATATGGCAACTCAAATGGCTCAGC F Q N S Q G F T S H N T I W Q L K W L S F K T R K D S Q V T T Q Y G N S N G S A I S K L A R I H K S Q H N M A T Q M A Q . . . . . . 20558 AGGACAAAAATCTAACACGAGTTCTTGAACATTTCGAGCTGTCACAACACGAACCCATCG R T K I - H E F L N I S S C H N T N P S G Q K S N T S S - T F R A V T T R T H R Q D K N L T R V L E H F E L S Q H E P I . . . . . . 20618 AAAAATAGCCCTTTTACCAAAAATATCCCCACAACAAAGCTTAAAACAAACAAGGCTATC K N S P F T K N I P T T K L K T N K A I K I A L L P K I S P Q Q S L K Q T R L S E K - P F Y Q K Y P H N K A - N K Q G Y . . . . . . 20678 CCCACATCGGTTAATCAACACCCAATTGATAAAATCTTTGAATTTCTCAGCCATACCCAT P T S V N Q H P I D K I F E F L S H T H P H R L I N T Q L I K S L N F S A I P I P H I G - S T P N - - N L - I S Q P Y P . . . . . . 20738 ATCCCAAAGCCTATCAATCCTTTCACAACCAAAGCTATTAATATCAAAATTCAAGTAAGG I P K P I N P F T T K A I N I K I Q V R S Q S L S I L S Q P K L L I S K F K - G Y P K A Y Q S F H N Q S Y - Y Q N S S K . . . . . . 20798 CATTGTCCTCCATATATAGTTCCATCTTTTCGATAAAATGCTTAGCTGAACAACATCAAA H C P P Y I V P S F R - N A - L N N I K I V L H I - F H L F D K M L S - T T S K A L S S I Y S S I F S I K C L A E Q H Q . . . . . 20858 GATGTACAGATATGAAAGTATATTGTGCAGTATATCATCCGGCAAAT D V Q I - K Y I V Q Y I I R Q M Y R Y E S I L C S I S S G K R C T D M K V Y C A V Y H P A N Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1+_PGL-6_AGS-3_PPS_1 (20573 20833) (frame '1'; 258 bp, 86 residues) 1 HEFLNISSCH NTNPSKNSPF TKNIPTTKLK TNKAIPTSVN QHPIDKIFEF LSHTHIPKPI 61 NPFTTKAINI KIQVRHCPPY IVPSFR- PGL 7 (- strand): 31097 23984 AGS-1 (28166 27939,27859 27757,26840 26740,26118 25981,25891 25748,25482 25407,25137 25052,24941 24816,24348 23984) SCR (e 1.000 d 0.994 a 0.975,e 1.000 d 0.872 a 0.891,e 1.000 d 0.946 a 0.995,e 1.000 d 0.945 a 0.999,e 1.000 d 0.994 a 0.982,e 1.000 d 0.881 a 0.948,e 1.000 d 0.999 a 0.820,e 1.000 d 0.998 a 0.868,e 0.981) Exon 1 28166 27939 ( 228 n); score: 1.000 Intron 1 27938 27860 ( 79 n); Pd: 0.994 Pa: 0.975 Exon 2 27859 27757 ( 103 n); score: 1.000 Intron 2 27756 26841 ( 916 n); Pd: 0.872 Pa: 0.891 Exon 3 26840 26740 ( 101 n); score: 1.000 Intron 3 26739 26119 ( 621 n); Pd: 0.946 Pa: 0.995 Exon 4 26118 25981 ( 138 n); score: 1.000 Intron 4 25980 25892 ( 89 n); Pd: 0.945 Pa: 0.999 Exon 5 25891 25748 ( 144 n); score: 1.000 Intron 5 25747 25483 ( 265 n); Pd: 0.994 Pa: 0.982 Exon 6 25482 25407 ( 76 n); score: 1.000 Intron 6 25406 25138 ( 269 n); Pd: 0.881 Pa: 0.948 Exon 7 25137 25052 ( 86 n); score: 1.000 Intron 7 25051 24942 ( 110 n); Pd: 0.999 Pa: 0.820 Exon 8 24941 24816 ( 126 n); score: 1.000 Intron 8 24815 24349 ( 467 n); Pd: 0.998 Pa: 0.868 Exon 9 24348 23984 ( 365 n); score: 0.981 PGS (25131 25052,24941 24816,24348 23984) SGN-E342207+ PGS (26055 25981,25891 25748,25482 25407,25137 25052,24941 24820) SGN-E265643+ PGS (26028 25981,25891 25748,25482 25407,25137 25052,24941 24820) SGN-E318865+ PGS (28166 27939,27859 27757,26840 26740,26118 25981,25891 25798) SGN-E262707+ 3-phase translation of AGS-1 (-strand): . . . . . . 28166 TACACCTTAACAATCTTTATCTATATATCTTCTTTACGAGTACACAGAATATCTAAACAC Y T L T I F I Y I S S L R V H R I S K H T P - Q S L S I Y L L Y E Y T E Y L N T H L N N L Y L Y I F F T S T Q N I - T . . . . . . 28106 AACTTCATCCATTCTCATGTTCACTGATAAGTGGGGGAACAGGTTGATGTACCTGTTTAT N F I H S H V H - - V G E Q V D V P V Y T S S I L M F T D K W G N R L M Y L F M Q L H P F S C S L I S G G T G - C T C L . . . . . . 28046 GCAGCAGGAACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAA A A G T D V K P A E I A R Q G L Q E A K Q Q E Q M - N L Q K - P D K D Y K R P K C S R N R C K T C R N S P T R I T R G Q . . . . . : . 27986 AAGAAGAATGTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACT K K N V D V V I M D T A G R L Q : I D K T R R M - M - S - W I Q L E D F R : - I K L K E E C R C S H N G Y S W K T S : D R - N . . . . . . 27847 ATGATGGATGAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTT M M D E L K D V K R V L N P T E V L L V - W M N - K T - N G Y - T P Q R F Y L L Y D G - I K R R E T G T E P H R G F T C . . . . : . . 27787 GTGGATGCAATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATT V D A M T G Q E A A : A L V T T F N L E I W M Q - L A K K L Q : L W S Q H S I S K L C G C N D W P R S C S : F G H N I Q S R N . . . . . . 26811 GGAATTACTGGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTA G I T G A I L T K L D G D S R G G A A L E L L V P S - R S - M E I L G V E Q L - W N Y W C H L D E A R W R F - G W S S F . . : . . . . 26751 AGTGTCAAGGAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAG S V K E : V S G K P I K L V G R G E R M E V S R R : Y Q E S Q S S S - E G V N V W R K C Q G : G I R K A N Q A R R K G - T Y G . . . . . . 26070 GACCTTGAACCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTT D L E P F Y P D R M A G R I L G M G D V T L N L S I L T A W L D V F - E W E M F G P - T F L S - P H G W T Y F R N G R C . . . : . . . 26010 CTATCGTTTGTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAG L S F V E K A Q E V : M R Q E D A E D L Q Y R L L R K P K K L : C V K K M L K I C R S I V C - E S P R S : Y A S R R C - R F A . . . . . . 25861 AAGAAGATCATGAGTGCAAAATTTGATTTCAATGACTTCCTGAAGCAAACTCGGGCAGTT K K I M S A K F D F N D F L K Q T R A V R R S - V Q N L I S M T S - S K L G Q L E E D H E C K I - F Q - L P E A N S G S . . . . . . : 25801 GCTAGGATGGGTACCATGTCGCGTGTTATTGGTATGATGCCTGGCATGGGAAAG : GTTACT A R M G T M S R V I G M M P G M G K : V T L G W V P C R V L L V - C L A W E R : L L C - D G Y H V A C Y W Y D A W H G K : G Y . . . . . . 25476 CCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAAAGATAATGGAGTCAATGATAGATGTC P A Q I R E A E K S L K I M E S M I D V L H K F E R Q R R A - R - W S Q - - M S S C T N S R G R E E L K D N G V N D R C . : . . . . . 25416 ATGACACCAG : AGGAGAGGGAGCAACCAGAATTGTTAGCAGAATCTCCTGCTAGAAGGAAA M T P : E E R E Q P E L L A E S P A R R K - H Q : R R G S N Q N C - Q N L L L E G N H D T R : G E G A T R I V S R I S C - K E . . . . : . . 25087 CGTATCGCTCAAGAATCTGGGAAAACTGAGCAACAG : GTGAGTCAACTTGTTGCTCAACTT R I A Q E S G K T E Q Q : V S Q L V A Q L V S L K N L G K L S N R : - V N L L L N F T Y R S R I W E N - A T : G E S T C C S T . . . . . . 24917 TTTCAAATGCGTGTACGTATGAAGAATTTGATGGGCGTTATGGAAGGTGGTTCGATTCCT F Q M R V R M K N L M G V M E G G S I P F K C V Y V - R I - W A L W K V V R F L F S N A C T Y E E F D G R Y G R W F D S . . . . . : . 24857 GCACTGAGTAATCTAGAGGAGGCACTAAAATCTGAACAGCAG : GCTCCTCCCGGTACTGCA A L S N L E E A L K S E Q Q : A P P G T A H - V I - R R H - N L N S R : L L P V L Q C T E - S R G G T K I - T A : G S S R Y C . . . . . . 24330 AGGAGGAAGCGAAGGTCAGAACCAAGGAAACAATTTGCAGACTCGGGATCAGCTAGGCCT R R K R R S E P R K Q F A D S G S A R P G G S E G Q N Q G N N L Q T R D Q L G L K E E A K V R T K E T I C R L G I S - A . . . . . . 24270 AGCCCTCGTGGTTTCGGGGCCAAGAACTGAAGTATAAGACTAGTATGTCAAACAAATTTT S P R G F G A K N - S I R L V C Q T N F A L V V S G P R T E V - D - Y V K Q I F - P S W F R G Q E L K Y K T S M S N K F . . . . . . 24210 TGAATCTTTGACTAGCTATCTATGAGTATCAACTAGAAAAAGGAATTGTGAGCAAAAAAG - I F D - L S M S I N - K K E L - A K K E S L T S Y L - V S T R K R N C E Q K R L N L - L A I Y E Y Q L E K G I V S K K . . . . . . 24150 GAAATGATCAACTAGAAAAGGGAAGTTCTTGACAAGATAATATATAGTACATTGTATGTA E M I N - K R E V L D K I I Y S T L Y V K - S T R K G K F L T R - Y I V H C M Y G N D Q L E K G S S - Q D N I - Y I V C . . . . . . 24090 CTCTCAACTATATAGTTTTGTCCCTCTTCTTGTGTAACTATTGTCTTCTTGATATATCTT L S T I - F C P S S C V T I V F L I Y L S Q L Y S F V P L L V - L L S S - Y I L T L N Y I V L S L F L C N Y C L L D I S . . . . . 24030 ATTATCTTGTAATCTTGAAAATTTCATTGTTTTTCCCACTCCTTTAA I I L - S - K F H C F S H S F L S C N L E N F I V F P T P L Y Y L V I L K I S L F F P L L - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-7_AGS-1_PPS_1 (28076 27939,27859 27757,26840 26740,26118 25981,25891 25748,25482 25407,25137 25052,24941 24816,24348 24241) (frame '1'; 1017 bp, 339 residues) 1 VGEQVDVPVY AAGTDVKPAE IARQGLQEAK KKNVDVVIMD TAGRLQIDKT MMDELKDVKR 61 VLNPTEVLLV VDAMTGQEAA ALVTTFNLEI GITGAILTKL DGDSRGGAAL SVKEVSGKPI 121 KLVGRGERME DLEPFYPDRM AGRILGMGDV LSFVEKAQEV MRQEDAEDLQ KKIMSAKFDF 181 NDFLKQTRAV ARMGTMSRVI GMMPGMGKVT PAQIREAEKS LKIMESMIDV MTPEEREQPE 241 LLAESPARRK RIAQESGKTE QQVSQLVAQL FQMRVRMKNL MGVMEGGSIP ALSNLEEALK 301 SEQQAPPGTA RRKRRSEPRK QFADSGSARP SPRGFGAKN- AGS-2 (31097 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26740,26118 25981,25891 25826) SCR (e 1.000 d 0.761 a 0.996,e 1.000 d 0.999 a 0.977,e 1.000 d 0.976 a 0.920,e 1.000 d 0.999 a 0.999,e 1.000 d 0.772 a 0.997,e 1.000 d 0.970 a 0.977,e 1.000 d 0.994 a 0.975,e 1.000 d 0.872 a 0.891,e 1.000 d 0.946 a 0.995,e 0.986 d 0.945 a 0.999,e 0.985) Exon 1 31097 30876 ( 222 n); score: 1.000 Intron 1 30875 30801 ( 75 n); Pd: 0.761 Pa: 0.996 Exon 2 30800 30671 ( 130 n); score: 1.000 Intron 2 30670 29054 (1617 n); Pd: 0.999 Pa: 0.977 Exon 3 29053 28986 ( 68 n); score: 1.000 Intron 3 28985 28913 ( 73 n); Pd: 0.976 Pa: 0.920 Exon 4 28912 28811 ( 102 n); score: 1.000 Intron 4 28810 28669 ( 142 n); Pd: 0.999 Pa: 0.999 Exon 5 28668 28516 ( 153 n); score: 1.000 Intron 5 28515 28315 ( 201 n); Pd: 0.772 Pa: 0.997 Exon 6 28314 28237 ( 78 n); score: 1.000 Intron 6 28236 28065 ( 172 n); Pd: 0.970 Pa: 0.977 Exon 7 28064 27939 ( 126 n); score: 1.000 Intron 7 27938 27860 ( 79 n); Pd: 0.994 Pa: 0.975 Exon 8 27859 27757 ( 103 n); score: 1.000 Intron 8 27756 26841 ( 916 n); Pd: 0.872 Pa: 0.891 Exon 9 26840 26740 ( 101 n); score: 1.000 Intron 9 26739 26119 ( 621 n); Pd: 0.946 Pa: 0.995 Exon 10 26118 25981 ( 138 n); score: 0.986 Intron 10 25980 25892 ( 89 n); Pd: 0.945 Pa: 0.999 Exon 11 25891 25826 ( 66 n); score: 0.985 PGS (28260 28237,28064 27939,27859 27757,26840 26740,26118 25981,25891 25826) SGN-E266514+ PGS (28579 28516,28314 28237,28064 27939,27859 27757,26840 26748) SGN-E246312+ PGS (28999 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26753) SGN-E332839+ PGS (28849 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26758) SGN-E250623+ PGS (28308 28237,28064 27939,27859 27757,26840 26793) SGN-E266766+ PGS (31060 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27772) SGN-E553686+ PGS (30738 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939) SGN-E256609+ PGS (29022 28986,28912 28811,28668 28516,28314 28237,28064 28010) SGN-E341894+ PGS (31062 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 28042) SGN-E339009+ PGS (30966 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 28045) SGN-E332256+ PGS (28623 28516,28314 28237,28064 28052) SGN-E250723+ PGS (31033 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28262) SGN-E343935+ PGS (31093 30876,30800 30671,29053 28986,28912 28811,28668 28578) SGN-E211661+ PGS (31052 30876,30800 30671,29053 28986,28912 28811,28668 28603) SGN-E267086+ PGS (31091 30876,30800 30671,29053 28986,28912 28811,28668 28640) SGN-E268785+ PGS (31091 30876,30800 30671,29053 28986,28912 28811,28668 28640) SGN-E266144+ PGS (31097 30876,30800 30671,29053 28986,28912 28845) SGN-E318539+ PGS (31097 30876,30800 30671,29053 28986,28912 28892) SGN-E295369+ PGS (31096 30876,30800 30754) SGN-E249520+ 3-phase translation of AGS-2 (-strand): . . . . . . 31097 AAGAAAAAAGCTTCAATTTTTGCTTCTTCTTTTGATTGTTTGTTCTTTAATCCTACCATG K K K A S I F A S S F D C L F F N P T M R K K L Q F L L L L L I V C S L I L P W E K S F N F C F F F - L F V L - S Y H . . . . . . 31037 GAAGCCACTGCTTCTTTCACTTCAACTATGGCTTCTCACCATTTCTTTCCACTTTCTAAA E A T A S F T S T M A S H H F F P L S K K P L L L S L Q L W L L T I S F H F L K G S H C F F H F N Y G F S P F L S T F - . . . . . . 30977 GCCACCCTTTCATCTTCTAAACTTAATCCCACTTGTAATTCTTCTTCTTCTTGGATTGGT A T L S S S K L N P T C N S S S S W I G P P F H L L N L I P L V I L L L L G L V S H P F I F - T - S H L - F F F F L D W . . . . . : . 30917 TCTACTCATTCTCTTTCATTTTCTTCAAGAAATTCATTTACT : AGGGATACATGGAGGGTG S T H S L S F S S R N S F T : R D T W R V L L I L F H F L Q E I H L L : G I H G G - F Y S F S F I F F K K F I Y : - G Y M E G . . . . . . 30782 ATCAATTCCAAGAATGTGGTAAGAAGGGAAATGAGTGGAGTTATTAGAGCTGAGATGTTT I N S K N V V R R E M S G V I R A E M F S I P R M W - E G K - V E L L E L R C L D Q F Q E C G K K G N E W S Y - S - D V . . . . . . : 30722 GGGCAGCTCACTAGCGGATTGGAAAATGCTTGGAACAAGCTCAAAGGAGAAG : AGGTTTTG G Q L T S G L E N A W N K L K G E : E V L G S S L A D W K M L G T S S K E K : R F - W A A H - R I G K C L E Q A Q R R R : G F . . . . . . : 29045 ACCAAGGAAAACATCGTGGAACCTATGAGGGACATCAGGAGGGCTCTTTTAGAAGCTGAT : T K E N I V E P M R D I R R A L L E A D : P R K T S W N L - G T S G G L F - K L M : D Q G K H R G T Y E G H Q E G S F R S - : . . . . . . 28912 GTTAGTCTCCCAGTTGTCAGAAGGTTTGTTCAGTCTGTTAGTGAAGAAGCCGTTGGCACT V S L P V V R R F V Q S V S E E A V G T L V S Q L S E G L F S L L V K K P L A L C - S P S C Q K V C S V C - - R S R W H . . . . . : . 28852 GGTTTGATTCGAGGTGTAAAACCAGATCAGCAACTAGTTAAG : ACTGTACGTGACGAGCTT G L I R G V K P D Q Q L V K : T V R D E L V - F E V - N Q I S N - L R : L Y V T S L W F D S R C K T R S A T S - : D C T - R A . . . . . . 28650 GTGAAACTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCTAAATCTAAGCCCACCGTA V K L M G G E V S E L V F A K S K P T V - N - W V E R F L N W F L L N L S P P - C E T D G W R G F - T G F C - I - A H R . . . . . . 28590 ATACTATTGGCCGGTCTACAAGGTGTTGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTA I L L A G L Q G V G K T T V S A K L A L Y Y W P V Y K V L G R Q L L V Q S - L Y N T I G R S T R C W E D N C - C K V S F . . : . . . . 28530 TATCTAAAGAAGCAG : GGTAAGAGTTGCATGCTGATTGCTGGAGACGTGTACAGACCTGCT Y L K K Q : G K S C M L I A G D V Y R P A I - R S R : V R V A C - L L E T C T D L L I S K E A : G - E L H A D C W R R V Q T C . . . . : . . 28269 GCTATTGACCAACTTGTTATTTTGGGTAAACAG : GTTGATGTACCTGTTTATGCAGCAGGA A I D Q L V I L G K Q : V D V P V Y A A G L L T N L L F W V N R : L M Y L F M Q Q E C Y - P T C Y F G - T : G - C T C L C S R . . . . . . 28037 ACAGATGTAAAACCTGCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAAT T D V K P A E I A R Q G L Q E A K K K N Q M - N L Q K - P D K D Y K R P K R R M N R C K T C R N S P T R I T R G Q K E E . . . . : . . 27977 GTAGATGTAGTCATAATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGAT V D V V I M D T A G R L Q : I D K T M M D - M - S - W I Q L E D F R : - I K L - W M C R C S H N G Y S W K T S : D R - N Y D G . . . . . . 27838 GAATTAAAAGACGTGAAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCA E L K D V K R V L N P T E V L L V V D A N - K T - N G Y - T P Q R F Y L L W M Q - I K R R E T G T E P H R G F T C C G C . . . : . . . 27778 ATGACTGGCCAAGAAGCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACT M T G Q E A A : A L V T T F N L E I G I T - L A K K L Q : L W S Q H S I S K L E L L N D W P R S C S : F G H N I Q S R N W N Y . . . . . . 26802 GGTGCCATCTTGACGAAGCTAGATGGAGATTCTAGGGGTGGAGCAGCTTTAAGTGTCAAG G A I L T K L D G D S R G G A A L S V K V P S - R S - M E I L G V E Q L - V S R W C H L D E A R W R F - G W S S F K C Q . : . . . . . 26742 GAG : GTATCAGGAAAGCCAATCAAGCTCGTAGGAAGGGGTGAACGTATGGAGGACCTTGAA E : V S G K P I K L V G R G E R M E D L E R : Y Q E S Q S S S - E G V N V W R T L N G : G I R K A N Q A R R K G - T Y G G P - . . . . . . 26061 CCTTTCTATCCTGACCGCATGGCTGGACGTATTTTAGGAATGGGAGATGTTCTATCGTTT P F Y P D R M A G R I L G M G D V L S F L S I L T A W L D V F - E W E M F Y R L T F L S - P H G W T Y F R N G R C S I V . . . : . . . 26001 GTTGAGAAAGCCCAAGAAGTT : ATGCGTCAAGAAGATGCTGAAGATTTGCAGAAGAAGATC V E K A Q E V : M R Q E D A E D L Q K K I L R K P K K L : C V K K M L K I C R R R S C - E S P R S : Y A S R R C - R F A E E D . . . 25852 ATGAGTGCAAAATTTGATTTCAATGAC M S A K F D F N D - V Q N L I S M H E C K I - F Q - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-7_AGS-2_PPS_1 (31097 30876,30800 30671,29053 28986,28912 28811,28668 28516,28314 28237,28064 27939,27859 27757,26840 26740,26118 25981,25891 25826) (frame '1'; 1287 bp, 429 residues) 1 KKKASIFASS FDCLFFNPTM EATASFTSTM ASHHFFPLSK ATLSSSKLNP TCNSSSSWIG 61 STHSLSFSSR NSFTRDTWRV INSKNVVRRE MSGVIRAEMF GQLTSGLENA WNKLKGEEVL 121 TKENIVEPMR DIRRALLEAD VSLPVVRRFV QSVSEEAVGT GLIRGVKPDQ QLVKTVRDEL 181 VKLMGGEVSE LVFAKSKPTV ILLAGLQGVG KTTVSAKLAL YLKKQGKSCM LIAGDVYRPA 241 AIDQLVILGK QVDVPVYAAG TDVKPAEIAR QGLQEAKKKN VDVVIMDTAG RLQIDKTMMD 301 ELKDVKRVLN PTEVLLVVDA MTGQEAAALV TTFNLEIGIT GAILTKLDGD SRGGAALSVK 361 EVSGKPIKLV GRGERMEDLE PFYPDRMAGR ILGMGDVLSF VEKAQEVMRQ EDAEDLQKKI 421 MSAKFDFND AGS-3 (28564 28516,28314 28237,28075 27939,27859 27757,26840 26803) SCR (e 1.000 d 0.772 a 0.997,e 1.000 d 0.970 a 0.516,e 1.000 d 0.994 a 0.975,e 1.000 d 0.872 a 0.891,e 1.000) Exon 1 28564 28516 ( 49 n); score: 1.000 Intron 1 28515 28315 ( 201 n); Pd: 0.772 Pa: 0.997 Exon 2 28314 28237 ( 78 n); score: 1.000 Intron 2 28236 28076 ( 161 n); Pd: 0.970 Pa: 0.516 Exon 3 28075 27939 ( 137 n); score: 1.000 Intron 3 27938 27860 ( 79 n); Pd: 0.994 Pa: 0.975 Exon 4 27859 27757 ( 103 n); score: 1.000 Intron 4 27756 26841 ( 916 n); Pd: 0.872 Pa: 0.891 Exon 5 26840 26803 ( 38 n); score: 1.000 PGS (28564 28516,28314 28237,28075 27939,27859 27757,26840 26803) SGN-E207182+ 3-phase translation of AGS-3 (-strand): . . . . . : . 28564 TGGGAAGACAACTGTTAGTGCAAAGTTAGCTTTATATCTAAAGAAGCAG : GGTAAGAGTTG W E D N C - C K V S F I S K E A : G - E L G K T T V S A K L A L Y L K K Q : G K S C G R Q L L V Q S - L Y I - R S R : V R V . . . . . . 28303 CATGCTGATTGCTGGAGACGTGTACAGACCTGCTGCTATTGACCAACTTGTTATTTTGGG H A D C W R R V Q T C C Y - P T C Y F G M L I A G D V Y R P A A I D Q L V I L G A C - L L E T C T D L L L L T N L L F W . : . . . . . 28243 TAAACAG : TGGGGGAACAGGTTGATGTACCTGTTTATGCAGCAGGAACAGATGTAAAACCT - T : V G E Q V D V P V Y A A G T D V K P K Q : W G N R L M Y L F M Q Q E Q M - N L V N S : G G T G - C T C L C S R N R C K T . . . . . . 28022 GCAGAAATAGCCCGACAAGGATTACAAGAGGCCAAAAAGAAGAATGTAGATGTAGTCATA A E I A R Q G L Q E A K K K N V D V V I Q K - P D K D Y K R P K R R M - M - S - C R N S P T R I T R G Q K E E C R C S H . . . : . . . 27962 ATGGATACAGCTGGAAGACTTCAG : ATAGATAAAACTATGATGGATGAATTAAAAGACGTG M D T A G R L Q : I D K T M M D E L K D V W I Q L E D F R : - I K L - W M N - K T - N G Y S W K T S : D R - N Y D G - I K R R . . . . . . 27823 AAACGGGTACTGAACCCCACAGAGGTTTTACTTGTTGTGGATGCAATGACTGGCCAAGAA K R V L N P T E V L L V V D A M T G Q E N G Y - T P Q R F Y L L W M Q - L A K K E T G T E P H R G F T C C G C N D W P R . : . . . . 27763 GCTGCAG : CTTTGGTCACAACATTCAATCTCGAAATTGGAATTACT A A : A L V T T F N L E I G I T L Q : L W S Q H S I S K L E L S C S : F G H N I Q S R N W N Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-7_AGS-3_PPS_1 (28240 28237,28075 27939,27859 27757,26840 26803) (frame '1'; 282 bp, 94 residues) 1 TVGEQVDVPV YAAGTDVKPA EIARQGLQEA KKKNVDVVIM DTAGRLQIDK TMMDELKDVK 61 RVLNPTEVLL VVDAMTGQEA AALVTTFNLE IGIT PGL 8 (- strand): 44630 40702 AGS-1 (44630 44572,42992 42872,42732 42613,42097 41867,41587 40702) SCR (e 1.000 d 0.980 a 0.992,e 1.000 d 0.998 a 0.999,e 1.000 d 0.989 a 0.997,e 1.000 d 1.000 a 0.994,e 0.999) Exon 1 44630 44572 ( 59 n); score: 1.000 Intron 1 44571 42993 (1579 n); Pd: 0.980 Pa: 0.992 Exon 2 42992 42872 ( 121 n); score: 1.000 Intron 2 42871 42733 ( 139 n); Pd: 0.998 Pa: 0.999 Exon 3 42732 42613 ( 120 n); score: 1.000 Intron 3 42612 42098 ( 515 n); Pd: 0.989 Pa: 0.997 Exon 4 42097 41867 ( 231 n); score: 1.000 Intron 4 41866 41588 ( 279 n); Pd: 1.000 Pa: 0.994 Exon 5 41587 40702 ( 886 n); score: 0.999 PGS (41455 40702) SGN-E540875- PGS (41891 41867,41587 40855) SGN-E540877+ PGS (42644 42613,42097 41867,41587 40967) SGN-E553355+ PGS (42644 42613,42097 41867,41587 41016) SGN-E553250+ PGS (41890 41867,41587 41064) SGN-E290732+ PGS (44630 44572,42992 42872,42732 42613,42097 41869) SGN-E207739+ 3-phase translation of AGS-1 (-strand): . . . . . . : 44630 TTTCTTGGTCTTCCTGTTGAGTTTGAACCTGAAGTACCTAGAAGACCCCCAAGTGCCAG : T F L G L P V E F E P E V P R R P P S A S : F L V F L L S L N L K Y L E D P Q V P : V S W S S C - V - T - S T - K T P K C Q : . . . . . . 42991 ACAAGAGTCTTTGGAGTTTCGACAGATTGCATGCAGCTTTCATTTGACTCTCGAGGAAAT T R V F G V S T D C M Q L S F D S R G N Q E S L E F R Q I A C S F H L T L E E I Y K S L W S F D R L H A A F I - L S R K . . . . . . : 42931 AGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCTTATACGTTCAAGGTGGCTTGCAG : S V P T I L L M M Q G R L Y V Q G G L Q : V S P Q S F - - C K G A Y T F K V A C R : - C P H N P S D D A R A L I R S R W L A : . . . . . . 42732 GCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCCAAGAAGAATTTGTCAGGGAGCAG A E G I F R I N A E N G Q E E F V R E Q L K G S S G S M P K M A K K N L S G S S G - R D L Q D Q C R K W P R R I C Q G A . . . . . . : 42672 CTAAATAGGGGGATTATTCCAGATAACATTGACGTCCATTGCTTAGCAGGTCTTATAAAG : L N R G I I P D N I D V H C L A G L I K : - I G G L F Q I T L T S I A - Q V L - R : A K - G D Y S R - H - R P L L S R S Y K : . . . . . . 42097 GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATTCTCTCTCGCCAGAGGAAATTATG A W F R E L P T G V L D S L S P E E I M L G S E S C Q R E F W I L S R Q R K L C G L V Q R V A N G S F G F S L A R G N Y . . . . . . 42037 CGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGAGACTTCTTCCTCCAACTGAAGCT R A Q S E E E C V R L V R L L P P T E A V L N R K K S V C G S - D F F L Q L K L A C S I G R R V C A A R E T S S S N - S . . . . . . 41977 GCTCTATTAGATTGGGCTATTAACTTGATGGCTGATGTTGCTCAACTGGAAAGTTTTAAC A L L D W A I N L M A D V A Q L E S F N L Y - I G L L T - W L M L L N W K V L T C S I R L G Y - L D G - C C S T G K F - . . . . . . : 41917 AAAATGAATGCACGTAATATCGCTATGGTGTTTGCTCCAAATATGACACAG : ATGGCAGAT K M N A R N I A M V F A P N M T Q : M A D K - M H V I S L W C L L Q I - H R : W Q I Q N E C T - Y R Y G V C S K Y D T : D G R . . . . . . 41578 CCGTTGACTGCTTTGATGTATGCAGTTCAAGTTATGAACTTTCTCAAAACTCTTATTCTC P L T A L M Y A V Q V M N F L K T L I L R - L L - C M Q F K L - T F S K L L F S S V D C F D V C S S S Y E L S Q N S Y S . . . . . . 41518 CGGACTTTGAAAGACCGAGAAGAAACTGTTGTAGAAGCTGGTCCTGCACCAGAACTGGAG R T L K D R E E T V V E A G P A P E L E G L - K T E K K L L - K L V L H Q N W S P D F E R P R R N C C R S W S C T R T G . . . . . . 41458 CCTTTCGATGAAAATGGACATCATAGTGCTTCACAACCAATAGTTCAGAAGTCTAACGAG P F D E N G H H S A S Q P I V Q K S N E L S M K M D I I V L H N Q - F R S L T R A F R - K W T S - C F T T N S S E V - R . . . . . . 41398 ATCGAGGAGGATATCCTTATATCCAAAGAACGACCCTCAAGTGGCGCTGCTAATTCTGCC I E E D I L I S K E R P S S G A A N S A S R R I S L Y P K N D P Q V A L L I L P D R G G Y P Y I Q R T T L K W R C - F C . . . . . . 41338 CTCAGAGAGATAATAGTTGAGAATAAATCCCATGGATTACCATGTACCATAGAGAACGTT L R E I I V E N K S H G L P C T I E N V S E R - - L R I N P M D Y H V P - R T F P Q R D N S - E - I P W I T M Y H R E R . . . . . . 41278 CTTCAGAAAGATGCGTTCGTTGATTGTCTCAGTGAAATCTCAAACCTACCAGACAGCACA L Q K D A F V D C L S E I S N L P D S T F R K M R S L I V S V K S Q T Y Q T A Q S S E R C V R - L S Q - N L K P T R Q H . . . . . . 41218 AAGGATGATGAGCTTGGATCTGGTAACATCAATTCTACAAGTGGAAGAAGTCAACCAAAA K D D E L G S G N I N S T S G R S Q P K R M M S L D L V T S I L Q V E E V N Q K K G - - A W I W - H Q F Y K W K K S T K . . . . . . 41158 ATCCGAAGGACTAAAAGCGTGCATTCGAGCAGTTCTAGTCTGAAAGGATCAAAGAAAATG I R R T K S V H S S S S S L K G S K K M S E G L K A C I R A V L V - K D Q R K - N P K D - K R A F E Q F - S E R I K E N . . . . . . 41098 ATTGAATGGCCAATAGGTCACATATCTGGTAGTTTAGAGAAGGGCAAAGGAGTCAGAATC I E W P I G H I S G S L E K G K G V R I L N G Q - V T Y L V V - R R A K E S E S D - M A N R S H I W - F R E G Q R S Q N . . . . . . 41038 ATCGATAGGTTGAATTCGACAACAGAAAGGGTGGAAGCATGGCGATGAACAACGTCTCGC I D R L N S T T E R V E A W R - T T S R S I G - I R Q Q K G W K H G D E Q R L A H R - V E F D N R K G G S M A M N N V S . . . . . . 40978 CTCAAGGGGCTATTGTTGCTACCTCATCAAGAAGTTAAATGGTTGTGATTTATGTTTGGA L K G L L L L P H Q E V K W L - F M F G S R G Y C C Y L I K K L N G C D L C L E P Q G A I V A T S S R S - M V V I Y V W . . . . . . 40918 AAAAAAAGAAGAAGACAATGTATTATCCAGTTATGTTTGTGCTTGGATATTGGTTACTTT K K R R R Q C I I Q L C L C L D I G Y F K K E E D N V L S S Y V C A W I L V T F K K K K K T M Y Y P V M F V L G Y W L L . . . . . . 40858 CTTAGTAGTTCAACAGGAATTCTGTCACCTTTCTCTCTAGTCATGTTTGGCTGGGGAAAC L S S S T G I L S P F S L V M F G W G N L V V Q Q E F C H L S L - S C L A G E T S - - F N R N S V T F L S S H V W L G K . . . . . . 40798 TAGCAGGATGAATGTAATTTATGTTTTTTTTTTTTTAGAATGAATATTGTTTTGGTTTCC - Q D E C N L C F F F F R M N I V L V S S R M N V I Y V F F F L E - I L F W F P L A G - M - F M F F F F - N E Y C F G F . . . . 40738 AATTTCAATATGATTTTCTTCAATTTGACATAAACAA N F N M I F F N L T - T I S I - F S S I - H K Q Q F Q Y D F L Q F D I N Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-8_AGS-1_PPS_1 (44630 44572,42992 42872,42732 42613,42097 41867,41587 40991) (frame '1'; 1125 bp, 375 residues) 1 FLGLPVEFEP EVPRRPPSAS TRVFGVSTDC MQLSFDSRGN SVPTILLMMQ GRLYVQGGLQ 61 AEGIFRINAE NGQEEFVREQ LNRGIIPDNI DVHCLAGLIK AWFRELPTGV LDSLSPEEIM 121 RAQSEEECVR LVRLLPPTEA ALLDWAINLM ADVAQLESFN KMNARNIAMV FAPNMTQMAD 181 PLTALMYAVQ VMNFLKTLIL RTLKDREETV VEAGPAPELE PFDENGHHSA SQPIVQKSNE 241 IEEDILISKE RPSSGAANSA LREIIVENKS HGLPCTIENV LQKDAFVDCL SEISNLPDST 301 KDDELGSGNI NSTSGRSQPK IRRTKSVHSS SSSLKGSKKM IEWPIGHISG SLEKGKGVRI 361 IDRLNSTTER VEAWR- AGS-2 (42954 42872,42732 42613,42097 41750) SCR (e 1.000 d 0.998 a 0.999,e 1.000 d 0.989 a 0.997,e 1.000) Exon 1 42954 42872 ( 83 n); score: 1.000 Intron 1 42871 42733 ( 139 n); Pd: 0.998 Pa: 0.999 Exon 2 42732 42613 ( 120 n); score: 1.000 Intron 2 42612 42098 ( 515 n); Pd: 0.989 Pa: 0.997 Exon 3 42097 41750 ( 348 n); score: 1.000 PGS (42954 42872,42732 42613,42097 41750) SGN-E333964+ 3-phase translation of AGS-2 (-strand): . . . . . . 42954 TTTCATTTGACTCTCGAGGAAATAGTGTCCCCACAATCCTTCTGATGATGCAAGGGCGCT F H L T L E E I V S P Q S F - - C K G A F I - L S R K - C P H N P S D D A R A L S F D S R G N S V P T I L L M M Q G R . . . : . . . 42894 TATACGTTCAAGGTGGCTTGCAG : GCTGAAGGGATCTTCAGGATCAATGCCGAAAATGGCC Y T F K V A C R : L K G S S G S M P K M A I R S R W L A : G - R D L Q D Q C R K W P L Y V Q G G L Q : A E G I F R I N A E N G . . . . . . 42695 AAGAAGAATTTGTCAGGGAGCAGCTAAATAGGGGGATTATTCCAGATAACATTGACGTCC K K N L S G S S - I G G L F Q I T L T S R R I C Q G A A K - G D Y S R - H - R P Q E E F V R E Q L N R G I I P D N I D V . . . : . . . 42635 ATTGCTTAGCAGGTCTTATAAAG : GCTTGGTTCAGAGAGTTGCCAACGGGAGTTTTGGATT I A - Q V L - R : L G S E S C Q R E F W I L L S R S Y K : G L V Q R V A N G S F G F H C L A G L I K : A W F R E L P T G V L D . . . . . . 42060 CTCTCTCGCCAGAGGAAATTATGCGTGCTCAATCGGAAGAAGAGTGTGTGCGGCTCGTGA L S R Q R K L C V L N R K K S V C G S - S L A R G N Y A C S I G R R V C A A R E S L S P E E I M R A Q S E E E C V R L V . . . . . . 42000 GACTTCTTCCTCCAACTGAAGCTGCTCTATTAGATTGGGCTATTAACTTGATGGCTGATG D F F L Q L K L L Y - I G L L T - W L M T S S S N - S C S I R L G Y - L D G - C R L L P P T E A A L L D W A I N L M A D . . . . . . 41940 TTGCTCAACTGGAAAGTTTTAACAAAATGAATGCACGTAATATCGCTATGGTGTTTGCTC L L N W K V L T K - M H V I S L W C L L C S T G K F - Q N E C T - Y R Y G V C S V A Q L E S F N K M N A R N I A M V F A . . . . . . 41880 CAAATATGACACAGGTAAGTCAAAACTTTCATGCAATTTAAAAGAAGGAATCATATTGTT Q I - H R - V K T F M Q F K R R N H I V K Y D T G K S K L S C N L K E G I I L L P N M T Q V S Q N F H A I - K K E S Y C . . . . . . 41820 GTTCCTATAACGTCTCTTTTCATTTTCTTAGTTTCGGGTGTGGGTAAGCGTTTGGGGGGT V P I T S L F I F L V S G V G K R L G G F L - R L F S F S - F R V W V S V W G V C S Y N V S F H F L S F G C G - A F G G . . 41760 TACAGCTTGTT Y S L T A C L Q L V Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-1-_PGL-8_AGS-2_PPS_1 (42952 42872,42732 42613,42097 41840) (frame '0'; 456 bp, 152 residues) 1 SFDSRGNSVP TILLMMQGRL YVQGGLQAEG IFRINAENGQ EEFVREQLNR GIIPDNIDVH 61 CLAGLIKAWF RELPTGVLDS LSPEEIMRAQ SEEECVRLVR LLPPTEAALL DWAINLMADV 121 AQLESFNKMN ARNIAMVFAP NMTQVSQNFH AI- ... finished at: Tue Aug 29 00:54:47 2006 ________________________________________________________________________________ Sequence 2: C09HBa0168F14.1-2, from 1 to 63345, both strands analyzed. ... started at: Tue Aug 29 00:54:47 2006 EST library file: /tmp/cxgn-bacpublish-resources-2PrVad/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 115 EST library file: /tmp/cxgn-bacpublish-resources-2PrVad/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 148 ******************************************************************************** EST sequence 54 +strand 840 n (File: SGN-E542084+) 1 TTTTTTTTTT TAGGGGAAAA TTTCTTACTT CTATAAATGT CACGACCCAA ATCGGATCGC 61 GACTGGCACC CACACTTACC CTGCTATGTG AGCGAACCAA CCAATCCAAA CCTTAACATT 121 TCAATGTAAT ATCAACATAA AGTAATGCGG AAGACTTAAA CTTATTAATG AAAACCAATT 181 CAATAACTAT TATTTCCCAA AATCTGGAAG TCATCATCAT AAGAACATCT ACTTCAAATT 241 ACTAAATCTA AGAGTTTCTA AGAAGCTAAA AAATACATAA AAGCTAGTCC ATGCCGGAAC 301 TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAT CTAGAAAGCA TTAGCTCACC 361 CTGATATCCG AAGTAATGAA GACTGGCTAG AGTTACTGTT GAGTCGAAGA TGACGGCACG 421 TTTGCTAAAA TCAGTGGACG GAGGAGAAGG GAAAGCACAC CGGGAATGAG AAGAAGCTGA 481 AGGAGGAACC AAAGAGGAAT CCCATTGCAA AGTAAATGAG AGTGTAAGCT AGCAGACGCG 541 ATGGAAGAGC TTACGCAGAA ATAACACTCT CATTTGGTGA TTTAGTTTGG AGATCATCTG 601 AGACCTTCGT GTTGGACAAC ATCATCCATG AAGATGTCAT TAGAAAAGTT AGATGCTTTA 661 TATACATGTT GATAGTTCCT GACTACTCTA TTTCTTTTTC AGAAAGCCCC GAAATTTCTC 721 AGATGATAAA TGCTGTCTGT TTTGGAAAAC CATCTCTATG CAAAGATGAT GTTTGCTGCA 781 TTGAGGTGTC AATATTGGGA ATTTCAAGAA AATTATGCCT TGTAGAATAT GTACAGCAAC Predicted gene structure (within gDNA segment 1463 to 8556): Exon 1 2611 2762 ( 152 n); cDNA 36 187 ( 152 n); score: 0.914 Intron 1 2763 2792 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.52) ?? Exon 2 2793 3022 ( 230 n); cDNA 188 426 ( 239 n); score: 0.817 PPA cDNA 11 1 MATCH C09HBa0168F14.1-2+ SGN-E542084+ 0.856 382 0.455 C PGS_C09HBa0168F14.1-2+_SGN-E542084+ (2611 2762,2793 3022) Alignment (genomic DNA sequence = upper lines): AATGTCTCGA TCCAAATTGG GCCGCGACTG GCACCCACAC TTACCCTCCT ATGTGAGCGA 2670 |||||| ||| |||||| || |||||||| |||||||||| ||||||| || |||||||||| AATGTCACGA CCCAAATCGG ATCGCGACTG GCACCCACAC TTACCCTGCT ATGTGAGCGA 95 ACCAACCAAT CTAAACCTCA ACATTTCAAT ATAATATCAA CAGGAAGTAA TGCGGAAGAC 2730 |||||||||| | |||||| | |||||||||| ||||||||| || |||||| |||||||||| ACCAACCAAT CCAAACCTTA ACATTTCAAT GTAATATCAA CATAAAGTAA TGCGGAAGAC 155 TTAAACTCAT TAATAAAAAC CAATTCAATA ACTTCTAAAA ACTCAACAAC TATTATTATT 2790 ||||||| || |||| ||||| |||||||||| || TTAAACTTAT TAATGAAAAC CAATTCAATA AC........ .......... .......... 187 CT-------T CCCAAAATCT GGAAGTCATC ATCACAAGAA CATCTATCCT CAAATTACT- 2842 | |||||||||| |||||||||| |||| ||||| |||||| | | ||||||||| ..TATTATTT CCCAAAATCT GGAAGTCATC ATCATAAGAA CATCTA-CTT CAAATTACTA 244 AATCTAAGAG TATCTAAGAA GCTAAAATAC ATA-AAAAGC TAGTCCATGC CGGAACTTCA 2901 |||||||||| | |||||||| ||||||| | | | |||||| |||||||||| |||||||||| AATCTAAGAG TTTCTAAGAA GCTAAAAAAT ACATAAAAGC TAGTCCATGC CGGAACTTCA 304 AGGCATCAAG ACATGAGGAG GAAGATCCAG TCCAAGCTAG -AAGCGTTAG CTCACCCTGA 2960 || ||||||| |||||| ||| |||||||||| ||||| |||| |||| |||| |||||||||| AGACATCAAG ACATGAAGAG GAAGATCCAG TCCAATCTAG AAAGCATTAG CTCACCCTGA 364 AATCCGATGT AATGAAGACT GGCTAGAGTT GCGGTTGAGT TGAAGACGAC GGCACGTTTG 3020 |||||| || |||||||||| |||||||||| | ||||||| ||||| ||| |||||||||| TATCCGAAGT AATGAAGACT GGCTAGAGTT ACTGTTGAGT CGAAGATGAC GGCACGTTTG 424 CT 3022 || CT 426 hqPGS_C09HBa0168F14.1-2+_SGN-E542084+ (2611 2762,2793 3022) ******************************************************************************** EST sequence 209 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 2112 to 8387): Exon 1 2784 2949 ( 166 n); cDNA 2 165 ( 164 n); score: 0.919 Intron 1 2950 4848 (1899 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.60) Exon 2 4849 4903 ( 55 n); cDNA 166 216 ( 51 n); score: 0.600 Intron 2 4904 5340 ( 437 n); Pd: 0.900 (s: 0.58), Pa: 0.000 (s: 0.70) Exon 3 5341 5384 ( 44 n); cDNA 217 258 ( 42 n); score: 0.705 Intron 3 5385 5991 ( 607 n); Pd: 0.000 (s: 0.70), Pa: 0.797 (s: 0) Exon 4 5992 6028 ( 37 n); cDNA 259 295 ( 37 n); score: 0.595 MATCH C09HBa0168F14.1-2+ SGN-E238551- 0.839 302 0.487 C PGS_C09HBa0168F14.1-2+_SGN-E238551- (2784 2949,4849 4903,5341 5384,5992 6028) Alignment (genomic DNA sequence = upper lines): TATTATTCTT CCCAAAATCT GGAAGTCATC ATCACAAGAA CATCTATCCT CAAATTACT- 2842 ||||||| | |||||||||| |||||| ||| |||||||||| |||||| | | | ||||||| TATTATT--T CCCAAAATCT GGAAGTTATC ATCACAAGAA CATCTA-CTT CGAATTACTA 58 AATCTAAGAG TATCTAAGAA GCTAAAATAC ATAAAAAGCT AGTCCATGCC GGAACTTCAA 2902 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AATCTAAGAG TATCTAAGAA GCTAAAATAC ATAAACAGCT AGTCCATGCC GGAACTTCAA 118 GGCATCAAGA CATGAGGAGG AAGATCCAGT CCAAGCTAGA AGCGTTAGCT CACCCTGAAA 2962 |||||||||| ||||| || | |||||||||| |||||||||| ||| || GGCATCAAGA CATGAAGAAG AAGATCCAGT CCAAGCTAGA AGCTTTG... .......... 165 TCCGATGTAA TGAAGACTGG CTAGAGTTGC GGTTGAGTTG AAGACGACGG CACGTTTGCT 3022 .......... .......... .......... .......... .......... .......... 165 GCACTCCACA AATAACAAGG AAAGAAACAT ACAAGTAGGG GTCAGTACAA AACACGGGTA 3082 .......... .......... .......... .......... .......... .......... 165 CTGAGTAGAT ATCATCGGAC AACTCAAAAT AGAAACAATA TATATCAGAT AATATCATAA 3142 .......... .......... .......... .......... .......... .......... 165 ATCAACTACA ATACTCAATC TGTAGCAACA CCATGTACAA GAATCTTTGA TAAATAACGT 3202 .......... .......... .......... .......... .......... .......... 165 CAAGTACATT CATGAGGACT CAAGCCTCCA TATCATACTC ATTTGGGAAT TAGGTTCATT 3262 .......... .......... .......... .......... .......... .......... 165 AGATTGAGTA TATTAACATC TTTCAAGATT CATCACCTTT ATTCTTGTGT CGGTACGTGA 3322 .......... .......... .......... .......... .......... .......... 165 CACTCCGCTC CCTTACTACT ATGTGTCGGA ACGTGACACT CCGATCCCCT AGTTCTACGT 3382 .......... .......... .......... .......... .......... .......... 165 GTCGGTTCGT GACACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGATAC CCGATCCCCT 3442 .......... .......... .......... .......... .......... .......... 165 AATTCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATTC TACGTGTCGA TTCGTGACAC 3502 .......... .......... .......... .......... .......... .......... 165 CCGATCTCCT AATTCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATTT TACGTGTCGA 3562 .......... .......... .......... .......... .......... .......... 165 TTCGTGACAC CCGATCCCCT AATTCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATTC 3622 .......... .......... .......... .......... .......... .......... 165 TACATGTCGG TTCGTGACAC CCGATCCCCT AATTCTACGT GTCAGTCCGT GACACCCGAT 3682 .......... .......... .......... .......... .......... .......... 165 CCCCTAATTC TACGTGTCGG TCCGTGACAC CCGATCCCCT AATTCTACGT GTCGGTTCGT 3742 .......... .......... .......... .......... .......... .......... 165 GACACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGACAC CTGATCCACT AATCTCATTC 3802 .......... .......... .......... .......... .......... .......... 165 TATTAATTCA TCAAGCCTTC TTTTATACCA AGGCATCATC AATCTCATCA ATCTCATCAC 3862 .......... .......... .......... .......... .......... .......... 165 TTTAGTTCAT CAAGCCTTCT TTTATACCAA GGCATCATCA ATCTCATTAC TTTAGTTCAT 3922 .......... .......... .......... .......... .......... .......... 165 CGAACCTTCT TTTATACCAA GACATCATTA TTAACAAGGT TTTTTTTTTC AAGATTTGGG 3982 .......... .......... .......... .......... .......... .......... 165 ATTCAATAGC TTCATCATGC TTATTTCATC ACAATTATAT AATCACATTC ATGCAAGCAT 4042 .......... .......... .......... .......... .......... .......... 165 ACAATTAAGC ATATAGAAGA CTTTACAATA CAACCCAACA CATATCATTC GCTATCAAGA 4102 .......... .......... .......... .......... .......... .......... 165 GTTAACTACG AATAGTATAA AACCATAACC TACCTCCACC GAAGAATTTC GATCAAGCAA 4162 .......... .......... .......... .......... .......... .......... 165 GCAATTTCCC AAGCCTTTTT CGTTTTCTCG TTTCTCCTCT TTGTCGTCGA TCCTCTCTCT 4222 .......... .......... .......... .......... .......... .......... 165 CTCTTCTTGT TCTTTCTATT TTCTTTATTC AAATCCTCTT TCTTTTACCC TAATTAGCAT 4282 .......... .......... .......... .......... .......... .......... 165 ATAATTAAGA ATAAAAGATG GCAATAATAA CTCACTAGTT TACTCAAGGT TACCTCTTTT 4342 .......... .......... .......... .......... .......... .......... 165 AGCCCCCAAG TAATTGAGTT ATTAATATTA AACCACTAAC TTTATAATTA TAAGTCGGAA 4402 .......... .......... .......... .......... .......... .......... 165 TAGTCAAAAA CGTCCCTTAA AATATTAAAG AAATCCGACT CCGCCTGGGA TTACGCAGCC 4462 .......... .......... .......... .......... .......... .......... 165 TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCTGC TCCGTCACAG AGTTCAGAGA 4522 .......... .......... .......... .......... .......... .......... 165 CTCAATTCTC TGAAGAGTCT GTGACAGTCC GTCACGCCTG TGACGGTCCA TCCTGCCATT 4582 .......... .......... .......... .......... .......... .......... 165 CCGTTACGAA GTTCAGAGAG TCGATTTCAG TACCCATTTT TCAGAATTTC TAAGTGTTTT 4642 .......... .......... .......... .......... .......... .......... 165 GAAACGAGAC ACTCTCGACG GTCCGTCGTG CCCATGACGG TCCGTCGTGG GTTCCGTCAT 4702 .......... .......... .......... .......... .......... .......... 165 CTCAGCCTGT TTTTCTATAA ATAAAATCTG CTGCTCAAAA TGACTAAACA GGTCGTTACA 4762 .......... .......... .......... .......... .......... .......... 165 TTTAATAATA AAAATGTGTC CTCCACTCTT CATTCTTTTT TTGTTTATTA TATAACTATC 4822 .......... .......... .......... .......... .......... .......... 165 TCTTTATTTT ATAATTTTGA CTAATTTTTA ATCACATAAA CTGATAAATA TTCCAACCGT 4882 ||| ||| | ||| | | | | ||| || | .......... .......... ......TTTT ATC-GA-AAA AAGGTGATTT TTCGAAAAGA 197 CTAATTATTA TAATTTATAA TATATACTTT ATAAATCCTT TTAACTTTTT TTAATTTCAT 4942 | || || || |||| | | GT--TTGTTT TATTTTAAAG T......... .......... .......... .......... 216 GGGTACCCAC CATTTTCAGC CGTCTAATAT ATTATTAAAG GGTTGGTGAT TAGTCAATTT 5002 .......... .......... .......... .......... .......... .......... 216 TTTTCTAGTT GATTTAAAGT TAATTAAGTT AAAATTATTC TTGATTATTC AATTATGTAA 5062 .......... .......... .......... .......... .......... .......... 216 TGGTTAAAAT TATTTTTTTG TTGGTTATAA AGGAATATAT TGGTTGTAAC TAATCCAGTA 5122 .......... .......... .......... .......... .......... .......... 216 TGCCTTTTTA AGTAATGGAT TAATGGCTAA AATATAGCAT GAGTTATTGC TATTCTATTT 5182 .......... .......... .......... .......... .......... .......... 216 TTAATAAAGT AATATTTTTT TTCTTTTTTA AATTTTATAA ATGTTTGTAA TTATTACTAT 5242 .......... .......... .......... .......... .......... .......... 216 TTGATAGATA CCAACTCTAT ATCTCTACCA TATATTTACC TAATTAATTA AGGTATAATA 5302 .......... .......... .......... .......... .......... .......... 216 ATTTTTTTTA AGTGATATAG GTATAAAATA GACATGATAT ATTTCATTTT TCGAGAGTCG 5362 || |||| || | | |||||| .......... .......... .......... ........AT TTTTCGACTT TAG-GAGTCG 237 ACAATTAAAA TTTACACATA AAATCTTCAA TTTTTTTGAA ATAAAATTTA TACATTTGTA 5422 || |||| |||| | | | || CCACTTAATT TTTA-AGAAA AA........ .......... .......... .......... 258 AACTACGTAA CAAAAAGTAC TACAAGTCAC AATAATTGAC AATTCAAAAT ATTTACAAGA 5482 .......... .......... .......... .......... .......... .......... 258 TATATGAAAA ATTTACAGTC AAAGATAAAC TTGTTAAAAT CTCAAAAATT CAAAATGTGT 5542 .......... .......... .......... .......... .......... .......... 258 CGCATAAATT GAAATAGAGA GAATAATTAT TTACGTTAAT GATATAATTG GACATAATTT 5602 .......... .......... .......... .......... .......... .......... 258 CGATAAGAAA AATATCCCGA ATCTCCAATG GAAACTTCTA TCGAGATATT TTTAGTTTTT 5662 .......... .......... .......... .......... .......... .......... 258 AGTTGATGGA ATGTGATAGA GTTTATGTAC GAACACATAA AATTCAAATT CTGACTATTT 5722 .......... .......... .......... .......... .......... .......... 258 CTTCTTGATC TATATAGGCT ATTTATAAGT TTGATATGCA CTAATTGCTA TTATTGATAA 5782 .......... .......... .......... .......... .......... .......... 258 GTCAAAAGTG CATATATAGA GACAACAATT TAAGGACAAA TAAATTAAAC CACCACAAGC 5842 .......... .......... .......... .......... .......... .......... 258 ATATAGCCAC TCACTCTTCC AATTTTTTAA AAGTCAAAAG TTGGCCCTCT TTTGATAATT 5902 .......... .......... .......... .......... .......... .......... 258 TCTCCACACT ACAAAAAGCC AATTTACATT GCAAAAATAT TCAAGAAATC AACTTCTTTT 5962 .......... .......... .......... .......... .......... .......... 258 CTCATTTTCT TGTACACAAA AAATGCTAGG CAAGAAGTTT GGTTCAATGA AGAAATTAGC 6022 |||||| | ||| | | || ||| .......... .......... .........T CAAGAAAACT CATTCTCAAA ACAATTTAAA 289 CAAAAA 6028 || ||| CAGAAA 295 hqPGS_C09HBa0168F14.1-2+_SGN-E238551- (2784 2949,4849 4903,5341 5384) ******************************************************************************** EST sequence 218 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 1662 to 8135): Exon 1 2792 2949 ( 158 n); cDNA 53 211 ( 159 n); score: 0.867 Intron 1 2950 4848 (1899 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0.60) Exon 2 4849 4903 ( 55 n); cDNA 212 262 ( 51 n); score: 0.600 Intron 2 4904 5340 ( 437 n); Pd: 0.900 (s: 0.58), Pa: 0.000 (s: 0.70) Exon 3 5341 5384 ( 44 n); cDNA 263 304 ( 42 n); score: 0.705 Intron 3 5385 5991 ( 607 n); Pd: 0.000 (s: 0.70), Pa: 0.797 (s: 0) Exon 4 5992 6028 ( 37 n); cDNA 305 341 ( 37 n); score: 0.595 PPA cDNA 28 1 MATCH C09HBa0168F14.1-2+ SGN-E368629- 0.798 294 0.441 C PGS_C09HBa0168F14.1-2+_SGN-E368629- (2792 2949,4849 4903,5341 5384,5992 6028) Alignment (genomic DNA sequence = upper lines): TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC T-AATCTAAG 2850 |||||||||| |||||||| | |||||||||| |||||||| | || |||||| | |||||| TTCCCAAAAT CTGGAAGTTA TCATCACAAG AACATCTA-C TTCGAATTAC TAAATCTAGA 111 AGTATCTAAG AAGCTAAAAT ACATAA-AAA GCTAGTCCAT GCCGGAACTT CAAGGCATCA 2909 |||||||||| | ||||||| |||||| | | | |||||||| |||| ||||| |||||||||| AGTATCTAAG AGCCTAAAAT ACATAACACA GTTAGTCCAT GCCGAAACTT CAAGGCATCA 171 AGACATGAGG AGGAAGATCC AGTCCAAGCT AGAAGCGTTA GCTCACCCTG AAATCCGATG 2969 |||||| | | | |||||||| |||||||||| |||||| || AGACATAAAG AAGAAGATCC AGTCCAAGCT AGAAGCTTTG .......... .......... 211 TAATGAAGAC TGGCTAGAGT TGCGGTTGAG TTGAAGACGA CGGCACGTTT GCTGCACTCC 3029 .......... .......... .......... .......... .......... .......... 211 ACAAATAACA AGGAAAGAAA CATACAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA 3089 .......... .......... .......... .......... .......... .......... 211 GATATCATCG GACAACTCAA AATAGAAACA ATATATATCA GATAATATCA TAAATCAACT 3149 .......... .......... .......... .......... .......... .......... 211 ACAATACTCA ATCTGTAGCA ACACCATGTA CAAGAATCTT TGATAAATAA CGTCAAGTAC 3209 .......... .......... .......... .......... .......... .......... 211 ATTCATGAGG ACTCAAGCCT CCATATCATA CTCATTTGGG AATTAGGTTC ATTAGATTGA 3269 .......... .......... .......... .......... .......... .......... 211 GTATATTAAC ATCTTTCAAG ATTCATCACC TTTATTCTTG TGTCGGTACG TGACACTCCG 3329 .......... .......... .......... .......... .......... .......... 211 CTCCCTTACT ACTATGTGTC GGAACGTGAC ACTCCGATCC CCTAGTTCTA CGTGTCGGTT 3389 .......... .......... .......... .......... .......... .......... 211 CGTGACACCC GATCCCCTAA TTCTACGTGT CGGTTCGTGA TACCCGATCC CCTAATTCTA 3449 .......... .......... .......... .......... .......... .......... 211 CGTGTCGGTT CGTGACACCC GATCCCCTAA TTCTACGTGT CGATTCGTGA CACCCGATCT 3509 .......... .......... .......... .......... .......... .......... 211 CCTAATTCTA CGTGTCGGTT CGTGACACCC GATCCCCTAA TTTTACGTGT CGATTCGTGA 3569 .......... .......... .......... .......... .......... .......... 211 CACCCGATCC CCTAATTCTA CGTGTCGGTT CGTGACACCC GATCCCCTAA TTCTACATGT 3629 .......... .......... .......... .......... .......... .......... 211 CGGTTCGTGA CACCCGATCC CCTAATTCTA CGTGTCAGTC CGTGACACCC GATCCCCTAA 3689 .......... .......... .......... .......... .......... .......... 211 TTCTACGTGT CGGTCCGTGA CACCCGATCC CCTAATTCTA CGTGTCGGTT CGTGACACCC 3749 .......... .......... .......... .......... .......... .......... 211 GATCCCCTAA TTCTACGTGT CGGTTCGTGA CACCTGATCC ACTAATCTCA TTCTATTAAT 3809 .......... .......... .......... .......... .......... .......... 211 TCATCAAGCC TTCTTTTATA CCAAGGCATC ATCAATCTCA TCAATCTCAT CACTTTAGTT 3869 .......... .......... .......... .......... .......... .......... 211 CATCAAGCCT TCTTTTATAC CAAGGCATCA TCAATCTCAT TACTTTAGTT CATCGAACCT 3929 .......... .......... .......... .......... .......... .......... 211 TCTTTTATAC CAAGACATCA TTATTAACAA GGTTTTTTTT TTCAAGATTT GGGATTCAAT 3989 .......... .......... .......... .......... .......... .......... 211 AGCTTCATCA TGCTTATTTC ATCACAATTA TATAATCACA TTCATGCAAG CATACAATTA 4049 .......... .......... .......... .......... .......... .......... 211 AGCATATAGA AGACTTTACA ATACAACCCA ACACATATCA TTCGCTATCA AGAGTTAACT 4109 .......... .......... .......... .......... .......... .......... 211 ACGAATAGTA TAAAACCATA ACCTACCTCC ACCGAAGAAT TTCGATCAAG CAAGCAATTT 4169 .......... .......... .......... .......... .......... .......... 211 CCCAAGCCTT TTTCGTTTTC TCGTTTCTCC TCTTTGTCGT CGATCCTCTC TCTCTCTTCT 4229 .......... .......... .......... .......... .......... .......... 211 TGTTCTTTCT ATTTTCTTTA TTCAAATCCT CTTTCTTTTA CCCTAATTAG CATATAATTA 4289 .......... .......... .......... .......... .......... .......... 211 AGAATAAAAG ATGGCAATAA TAACTCACTA GTTTACTCAA GGTTACCTCT TTTAGCCCCC 4349 .......... .......... .......... .......... .......... .......... 211 AAGTAATTGA GTTATTAATA TTAAACCACT AACTTTATAA TTATAAGTCG GAATAGTCAA 4409 .......... .......... .......... .......... .......... .......... 211 AAACGTCCCT TAAAATATTA AAGAAATCCG ACTCCGCCTG GGATTACGCA GCCTGTGACG 4469 .......... .......... .......... .......... .......... .......... 211 GGCCGTCGTG CCTGCGACGG TCCGTCCTGC TGCTCCGTCA CAGAGTTCAG AGACTCAATT 4529 .......... .......... .......... .......... .......... .......... 211 CTCTGAAGAG TCTGTGACAG TCCGTCACGC CTGTGACGGT CCATCCTGCC ATTCCGTTAC 4589 .......... .......... .......... .......... .......... .......... 211 GAAGTTCAGA GAGTCGATTT CAGTACCCAT TTTTCAGAAT TTCTAAGTGT TTTGAAACGA 4649 .......... .......... .......... .......... .......... .......... 211 GACACTCTCG ACGGTCCGTC GTGCCCATGA CGGTCCGTCG TGGGTTCCGT CATCTCAGCC 4709 .......... .......... .......... .......... .......... .......... 211 TGTTTTTCTA TAAATAAAAT CTGCTGCTCA AAATGACTAA ACAGGTCGTT ACATTTAATA 4769 .......... .......... .......... .......... .......... .......... 211 ATAAAAATGT GTCCTCCACT CTTCATTCTT TTTTTGTTTA TTATATAACT ATCTCTTTAT 4829 .......... .......... .......... .......... .......... .......... 211 TTTATAATTT TGACTAATTT TTAATCACAT AAACTGATAA ATATTCCAAC CGTCTAATTA 4889 | || ||| | ||| | | | | ||| || | | || .......... .........T TTTATC-GA- AAAAAGGTGA TTTTTCGAAA AGAGT--TTG 248 TTATAATTTA TAATATATAC TTTATAAATC CTTTTAACTT TTTTTAATTT CATGGGTACC 4949 || || |||| | | TTTTATTTTA AAGT...... .......... .......... .......... .......... 262 CACCATTTTC AGCCGTCTAA TATATTATTA AAGGGTTGGT GATTAGTCAA TTTTTTTCTA 5009 .......... .......... .......... .......... .......... .......... 262 GTTGATTTAA AGTTAATTAA GTTAAAATTA TTCTTGATTA TTCAATTATG TAATGGTTAA 5069 .......... .......... .......... .......... .......... .......... 262 AATTATTTTT TTGTTGGTTA TAAAGGAATA TATTGGTTGT AACTAATCCA GTATGCCTTT 5129 .......... .......... .......... .......... .......... .......... 262 TTAAGTAATG GATTAATGGC TAAAATATAG CATGAGTTAT TGCTATTCTA TTTTTAATAA 5189 .......... .......... .......... .......... .......... .......... 262 AGTAATATTT TTTTTCTTTT TTAAATTTTA TAAATGTTTG TAATTATTAC TATTTGATAG 5249 .......... .......... .......... .......... .......... .......... 262 ATACCAACTC TATATCTCTA CCATATATTT ACCTAATTAA TTAAGGTATA ATAATTTTTT 5309 .......... .......... .......... .......... .......... .......... 262 TTAAGTGATA TAGGTATAAA ATAGACATGA TATATTTCAT TTTTCGAGAG TCGACAATTA 5369 || |||| ||| | ||| ||| || ||| .......... .......... .......... .ATTTTTCGA CTTTAG-GAG TCGCCACTTA 290 AAATTTACAC ATAAAATCTT CAATTTTTTT GAAATAAAAT TTATACATTT GTAAACTACG 5429 | |||| | | ||| ATTTTTA-AG AAAAA..... .......... .......... .......... .......... 304 TAACAAAAAG TACTACAAGT CACAATAATT GACAATTCAA AATATTTACA AGATATATGA 5489 .......... .......... .......... .......... .......... .......... 304 AAAATTTACA GTCAAAGATA AACTTGTTAA AATCTCAAAA ATTCAAAATG TGTCGCATAA 5549 .......... .......... .......... .......... .......... .......... 304 ATTGAAATAG AGAGAATAAT TATTTACGTT AATGATATAA TTGGACATAA TTTCGATAAG 5609 .......... .......... .......... .......... .......... .......... 304 AAAAATATCC CGAATCTCCA ATGGAAACTT CTATCGAGAT ATTTTTAGTT TTTAGTTGAT 5669 .......... .......... .......... .......... .......... .......... 304 GGAATGTGAT AGAGTTTATG TACGAACACA TAAAATTCAA ATTCTGACTA TTTCTTCTTG 5729 .......... .......... .......... .......... .......... .......... 304 ATCTATATAG GCTATTTATA AGTTTGATAT GCACTAATTG CTATTATTGA TAAGTCAAAA 5789 .......... .......... .......... .......... .......... .......... 304 GTGCATATAT AGAGACAACA ATTTAAGGAC AAATAAATTA AACCACCACA AGCATATAGC 5849 .......... .......... .......... .......... .......... .......... 304 CACTCACTCT TCCAATTTTT TAAAAGTCAA AAGTTGGCCC TCTTTTGATA ATTTCTCCAC 5909 .......... .......... .......... .......... .......... .......... 304 ACTACAAAAA GCCAATTTAC ATTGCAAAAA TATTCAAGAA ATCAACTTCT TTTCTCATTT 5969 .......... .......... .......... .......... .......... .......... 304 TCTTGTACAC AAAAAATGCT AGGCAAGAAG TTTGGTTCAA TGAAGAAATT AGCCAAAAA 6028 |||||| | ||| || || || | || ||| .......... .......... ..TCAAGAAA ACTCATTCTC AAAACAATTT AAACAGAAA 341 hqPGS_C09HBa0168F14.1-2+_SGN-E368629- (2792 2949,4849 4903,5341 5384) ******************************************************************************** EST sequence 52 +strand 686 n (File: SGN-E241789+) 1 ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 61 CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 121 GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAAAAAG AAAACATAAA AGTAGGGGTC 181 AGTACAAACA CGAGTACTGA GTAGATATCA TCGGCCAACT CAGAATAGAG AACAATATAT 241 ATCAAATAAT AAAATAAAAT CAACCATAAC ACTTAACAGG TGACAACAAC AAGTACCATA 301 ACCATTGGGC ACAACCCAAG AACATCTATG AGGACTCAAG CCTCCACACC ATACTCATTT 361 GGGAAACAGG TTCATTAAAT TGAGTACATT AACATAATTC AAGATTCATT CTTTTTACTA 421 TCGTGGTGTC GGAACGTGAT ACTCCGATCC CCTAATGCTA CGTGTCGGTT CGTGACACCC 481 GATCCCCTAA TACTACGTGT CGGTTCGTTA CACCCGATCT CCTAATACTA CGTGCCGATT 541 CGTGACACCC GATCCATTAA TACTATGTGT CGGTTCGTGA CACCCGATCC ATTAATACTA 601 CGTGTCGGTT CGTGACACCC GATCCCCTAA CCTCATTCTT TTAGTTCATC AAGCCTTCTT 661 TTATACCAAG ACATCATCAT TAACAA Predicted gene structure (within gDNA segment 1394 to 4663): Exon 1 2888 3314 ( 427 n); cDNA 1 428 ( 428 n); score: 0.804 Intron 1 3315 3347 ( 33 n); Pd: 0.511 (s: 0.76), Pa: 0.000 (s: 0.94) Exon 2 3348 3548 ( 201 n); cDNA 429 629 ( 201 n); score: 0.905 Intron 2 3549 3902 ( 354 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.88) Exon 3 3903 3959 ( 57 n); cDNA 630 686 ( 57 n); score: 0.895 MATCH C09HBa0168F14.1-2+ SGN-E241789+ 0.842 685 0.999 C PGS_C09HBa0168F14.1-2+_SGN-E241789+ (2888 3314,3348 3548,3903 3959) Alignment (genomic DNA sequence = upper lines): ATGCCGGAAC TTCAAGG-CA TCAAGACATG -AGGAGGAAG A-TCCAGTCC AAGCTAGAAG 2944 ||| | || | ||||||| || |||||||||| | ||| || | |||||||| |||||| | ATGTCTGATC TTCAAGGACA TCAAGACATG AATGAGAGAG AATCCAGTCC GAGCTAGGAA 60 CGTTAGCTCA CCCTGAAATC CGATGTAATG AAGACTGGCT AGAGTTGCGG TTGAGTTGAA 3004 | ||||||| |||||||||| || || ||| |||||||| | |||||||||| |||||||||| CAATAGCTCA CCCTGAAATC TGACGTGATG AAGACTGGTT AGAGTTGCGG TTGAGTTGAA 120 GACGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGGAA AGAAACATAC AAGTAGGGGT 3064 |||||||| | |||||||||| ||||||||| |||||| || ||||||| |||||||||| GACGACGGTA CGTTTGCTGC ACTCCACAAT TAACAA-AAA GAAAACATAA AAGTAGGGGT 179 CAGTACAAAA CACGGGTACT GAGTAGATAT CATCGGACAA CTCAAAATAG A-AACAATAT 3123 |||||| ||| |||| ||||| |||||||||| |||||| ||| |||| ||||| | |||||||| CAGTAC-AAA CACGAGTACT GAGTAGATAT CATCGGCCAA CTCAGAATAG AGAACAATAT 238 ATATCAGATA ATATCAT-AA ATCAACTACA ATACTCAATC TGTAGCAACA CCATGTACAA 3182 |||||| ||| ||| || || |||||| | | | ||| || || ||||| || |||| | ATATCAAATA ATAAAATAAA ATCAACCATA ACACTTAACA GGTGACAACA ACAAGTACCA 298 GAATCTTTGA TAAATAACGT CAAGTACATT CATGAGGACT CAAGCCTCCA TATCATACTC 3242 || | ||| | ||| |||| |||| ||||||||| |||||||||| | ||||||| TAACCATTG- GGCACAAC-C CAAGAACATC TATGAGGACT CAAGCCTCCA CACCATACTC 356 ATTTGGGAAT TAGGTTCATT AGATTGAGTA TATTAACATC TTTCAAGATT CATCACCTTT 3302 ||||||||| ||||||||| | |||||||| |||||||| ||||||||| ||| ||| ATTTGGGAAA CAGGTTCATT AAATTGAGTA CATTAACATA ATTCAAGATT CATTCTTTTT 416 ATTCTTGTGT CGGTACGTGA CACTCCGCTC CCTTACTACT ATGTGTCGGA ACGTGACACT 3362 | | | ||| | ||||| |||||| ||| ACTATCGTGG TG........ .......... .......... .....TCGGA ACGTGATACT 443 CCGATCCCCT AGTTCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATTC TACGTGTCGG 3422 |||||||||| | | |||||| |||||||||| |||||||||| |||||||| | |||||||||| CCGATCCCCT AATGCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATAC TACGTGTCGG 503 TTCGTGATAC CCGATCCCCT AATTCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATTC 3482 ||||| | || |||||| ||| ||| |||||| | || ||||| |||||||||| || |||| | TTCGTTACAC CCGATCTCCT AATACTACGT GCCGATTCGT GACACCCGAT CCATTAATAC 563 TACGTGTCGA TTCGTGACAC CCGATCTCCT AATTCTACGT GTCGGTTCGT GACACCCGAT 3542 || |||||| |||||||||| |||||| | ||| |||||| |||||||||| |||||||||| TATGTGTCGG TTCGTGACAC CCGATCCATT AATACTACGT GTCGGTTCGT GACACCCGAT 623 CCCCTAATTT TACGTGTCGA TTCGTGACAC CCGATCCCCT AATTCTACGT GTCGGTTCGT 3602 |||||| CCCCTA.... .......... .......... .......... .......... .......... 629 GACACCCGAT CCCCTAATTC TACATGTCGG TTCGTGACAC CCGATCCCCT AATTCTACGT 3662 .......... .......... .......... .......... .......... .......... 629 GTCAGTCCGT GACACCCGAT CCCCTAATTC TACGTGTCGG TCCGTGACAC CCGATCCCCT 3722 .......... .......... .......... .......... .......... .......... 629 AATTCTACGT GTCGGTTCGT GACACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGACAC 3782 .......... .......... .......... .......... .......... .......... 629 CTGATCCACT AATCTCATTC TATTAATTCA TCAAGCCTTC TTTTATACCA AGGCATCATC 3842 .......... .......... .......... .......... .......... .......... 629 AATCTCATCA ATCTCATCAC TTTAGTTCAT CAAGCCTTCT TTTATACCAA GGCATCATCA 3902 .......... .......... .......... .......... .......... .......... 629 ATCTCATTAC TTTAGTTCAT CGAACCTTCT TTTATACCAA GACATCATTA TTAACAA 3959 | |||||| |||||||||| | | |||||| |||||||||| |||||||| | ||||||| ACCTCATTCT TTTAGTTCAT CAAGCCTTCT TTTATACCAA GACATCATCA TTAACAA 686 hqPGS_C09HBa0168F14.1-2+_SGN-E241789+ (2888 3314,3348 3548,3903 3959) ******************************************************************************** EST sequence 222 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 1591 to 4625): Exon 1 2930 3342 ( 413 n); cDNA 1 419 ( 419 n); score: 0.839 Intron 1 3343 3578 ( 236 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.73) Exon 2 3579 3638 ( 60 n); cDNA 420 481 ( 62 n); score: 0.767 MATCH C09HBa0168F14.1-2+ SGN-E246710- 0.830 473 0.983 C PGS_C09HBa0168F14.1-2+_SGN-E246710- (2930 3342,3579 3638) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCGTTA GCTCACCCTG AA-ATCCGAT GTAATGAAGA CTGGCTAGAG 2988 |||||||||| |||||| ||| |||||||||| || |||||| ||| | |||| |||||| || AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGT-AAGA CTGGCTTGAA 59 TTGCGGTTGA GTTGAAGACG ACGGCACGTT TGCTGCACTC CACAAAT-AA CAAGGAAAGA 3047 || | ||||| |||||| ||| | |||||||| |||||||||| ||||||| || |||| | || TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAGAG- 118 AACATACAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGACAACTC 3107 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AACATAAAAG TAGGGGTCAG TACAAAACAC GGGTACTGAG TAGATATCAT CGGCCAACTC 178 AAAATAGAAA -CAATATATA T--CAGATAA TATCAT-AAA TCAACTACAA TACTCAATCT 3163 |||||||||| ||||||||| | || ||| |||||| ||| ||||||| | ||||||| | AAAATAGAAA TCAATATATA TACCAAGTAA TATCATAAAA TCAACTATGA TACTCAACAT 238 GTAGCAACAC CATGTACAAG AATCTTTGAT AAATAACGTC AAGTACATTC ATGAGGACTC 3223 ||||||||| || ||| | ||| || | || || |||| |||| || | |||||||||| GTAGCAACAA CAAATACTA- TATCATTAAC AATTACCGTC AAGTTCACAC ATGAGGACTC 297 AAGCCTCCAT ATCATACTCA TTTGGGAATT AGGTTCATTA GATTGAGTAT ATTAACATCT 3283 ||||||| || | |||||||| ||||||||| | |||||||| |||||||||| |||||||||| AAGCCTCAAT ACCATACTCA TTTGGGAATC ATGTTCATTA GATTGAGTAT ATTAACATCT 357 TTCAAGATTC ATCACCTTTA --T-TCTTGT GTCGGTACGT GACACTCCGC TCCCTTACTA 3340 |||||||||| || | ||||| | |||||| |||||||||| |||||||||| ||||| | || TTCAAGATTC ATTATCTTTA TTTCTCTTGT GTCGGTACGT GACACTCCGC TCCCTCAATA 417 CTATGTGTCG GAACGTGACA CTCCGATCCC CTAGTTCTAC GTGTCGGTTC GTGACACCCG 3400 | TT........ .......... .......... .......... .......... .......... 419 ATCCCCTAAT TCTACGTGTC GGTTCGTGAT ACCCGATCCC CTAATTCTAC GTGTCGGTTC 3460 .......... .......... .......... .......... .......... .......... 419 GTGACACCCG ATCCCCTAAT TCTACGTGTC GATTCGTGAC ACCCGATCTC CTAATTCTAC 3520 .......... .......... .......... .......... .......... .......... 419 GTGTCGGTTC GTGACACCCG ATCCCCTAAT TTTACGTGTC GATTCGTGAC ACCCGATCCC 3580 | .......... .......... .......... .......... .......... ........CA 421 CTAATTCT-A CGTGTCGGTT CGTGACAC-C CGATCCCCTA ATTCTACATG TCGGTTCGTG 3638 |||| || |||||||| |||||||| | |||||||||| | |||| ||| |||||| ||| TTAATCCTCT TGTGTCGGTA CGTGACACTC CGATCCCCTA AATCTATATG TCGGTTTGTG 481 hqPGS_C09HBa0168F14.1-2+_SGN-E246710- (2930 3342,3579 3638) ******************************************************************************** EST sequence 114 -strand 774 n (File: SGN-E349977-) 1 AGTAGATATC ATCGCTAACT CAAAATAGGG AACAATATAT ATCAATAATA ATGTAAATCA 61 ACTACAATAC TCATCATGTA GCAATAGCAA TTTCTTNATC ATTAACAATT ACCGTCAAGT 121 TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT 181 GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC 241 ACTCCGCTCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATATTCAT 301 TCTATCCTGG TACCGGAACG TGGCACCCGA TCCTCATATT CTATCCTGGT GTCGGAACGT 361 AACACTCCGA TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCTCAT 421 ATTCTATCCT GGTGTCGGAA CGTGACACTC CGATCCTCAT ATTCTATCCT GGTGTCGGAA 481 CGTGACACTC CGATCCTCAT ATTCATTCTA TCCTGGTACC GAAACGTGGC ACCCGATCCC 541 CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATCAT TCTCATTATA TAATTTATCA 601 AGCCTTCTCT CATACTAAGG CCTCATCAAT CTTATTATAT AATATATCAA GTGAATTAGG 661 GTTCTTTCAA GATTTGGGAT TCAATAGCTT CATCATGCTT TGTTAATTCA TAACAATTTC 721 ATAATCATAA TCATGCAAGC ATACCAATAA GCATATAGAC AGGTTTACAA CATC Predicted gene structure (within gDNA segment 1353 to 5344): Exon 1 3086 3382 ( 297 n); cDNA 1 303 ( 303 n); score: 0.756 Intron 1 3383 3443 ( 61 n); Pd: 0.000 (s: 0.60), Pa: 0.000 (s: 0.68) Exon 2 3444 3488 ( 45 n); cDNA 304 348 ( 45 n); score: 0.678 Intron 2 3489 3520 ( 32 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.66) Exon 3 3521 3575 ( 55 n); cDNA 349 399 ( 51 n); score: 0.664 Intron 3 3576 3667 ( 92 n); Pd: 0.000 (s: 0.62), Pa: 0.000 (s: 0.54) Exon 4 3668 3927 ( 260 n); cDNA 400 652 ( 253 n); score: 0.638 Intron 4 3928 3957 ( 30 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.57) ?? Exon 5 3958 4070 ( 113 n); cDNA 653 770 ( 118 n); score: 0.721 MATCH C09HBa0168F14.1-2+ SGN-E349977- 0.701 770 0.995 C PGS_C09HBa0168F14.1-2+_SGN-E349977- (3086 3382,3444 3488,3521 3575,3668 3927,3958 4070) Alignment (genomic DNA sequence = upper lines): AGTAGATATC ATCGGACAAC TCAAAATA-G AAACAATATA TATCAGATAA TATCATAAAT 3144 |||||||||| ||| | ||| |||||||| | ||||||||| ||||| |||| || ||||| AGTAGATATC ATC-GCTAAC TCAAAATAGG GAACAATATA TATCA-ATAA TAATGTAAAT 58 CAACTACAAT ACTCAATCTG TAGCAACACC ATGTACAAGA ATCTTTGATA AATAACGTCA 3204 |||||||||| ||||| || |||||| | | | | | ||| || | | | || ||||| CAACTACAAT ACTCATCATG TAGCAATAGC AATTTC-TTN ATCATTAACA ATTACCGTCA 117 AGTACATTCA TGAGGACTCA AGCCTCCATA TCATACTCAT TTGGGAATTA GGTTCATTAG 3264 ||| || || |||||||||| |||||| ||| ||||||||| |||||||||| ||||||||| AGTTCACACA TGAGGACTCA AGCCTCAATA CCATACTCAT TTGGGAATTA AGTTCATTAG 177 ATTGAGTATA TT-AACATCT TTCAAGATTC ATCACCTTT- AT--TCTTGT GTCGGTACGT 3320 |||||||||| || | |||| |||||||||| || | |||| | |||||| |||||||||| ATTGAGTATA TTCATTATCT TTCAAGATTC ATTATCTTTC TTCCTCTTGT GTCGGTACGT 237 GACACTCCGC TCC-C--TTA CTA-CTATGT GTCGGAACGT GACACTCCGA TCCCCTAGTT 3376 |||||||||| ||| | || ||| | || | |||||||| | |||||||| ||| | || GACACTCCGC TCCTCTATTT CTATCCTGGT GCCGGAACGT GGCACTCCGA TCCTCATATT 297 CTACGTGTCG GTTCGTGACA CCCGATCCCC TAATTCTACG TGTCGGTTCG TGATACCCGA 3436 | | CATTCT.... .......... .......... .......... .......... .......... 303 TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC TAATTCTA-C GTGTCGATTC 3495 || || || || | |||| || |||||||| | |||||| | || .......ATC CT-GGTACCG GAACGTGGCA CCCGATCCTC ATATTCTATC CTG....... 348 GTGACACCCG ATCTCCTAAT TCTACGTGTC GGTTCGTGAC AC-CCGATCC CCTAATTTTA 3554 ||||| || ||| || || ||||| ||| || || .......... .......... .....GTGTC GGAACGTAAC ACTCCGAT-- CCTCATATT- 380 CGTGTCGATT CGTGACACCC GATCCCCTAA TTCTACGTGT CGGTTCGTGA CACCCGATCC 3614 | | || | | | || ||| | CAT-TCTA-T CCTGGTACCG G......... .......... .......... .......... 399 CCTAATTCTA CATGTCGGTT CGTGACACCC GATCCCCTAA TTCTACGTGT CAGTCCGTGA 3674 |||| .......... .......... .......... .......... .......... ...AACGTGG 406 CACCCGATCC CCTAATTCTA --C--GTGTC GGTCCGTGAC AC-CCGATCC CCTAATTCTA 3729 |||||||||| | |||||| | ||||| || |||||| || ||||||| | |||||| CACCCGATCC TCATATTCTA TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCATATTCTA 466 --C--GTGTC GGTTCGTGAC AC-CCGATCC CCTAATTCTA CGTGTCGGTT CGTGACACCT 3784 | ||||| || |||||| || ||||||| | |||| | | || | | || ||| TCCTGGTGTC GGAACGTGAC ACTCCGATCC TCATATTC-A --T-TC-TAT CCTGGTACC- 520 GATCCACTAA TCTCATTCTA TTAATTCATC AAGCCTTCTT TTATACCAAG GCATCATCAA 3844 || | | | || ||||||||| |||||||||| || || ||| |||||||| | GAAACGTGGC ACCCGATCCC CTAATTCATC AAGCCTTCTT CTACACTAAG GCATCATC-A 579 TCTCATCAAT CTCATCACTT TAGTTCATCA AGCCTTCTTT TATACCAAGG CATCATCAAT 3904 | || || || | || | || || |||| |||||||| | |||| |||| | |||||||| T-TC-TC-AT -T-AT-A--- TAATTTATCA AGCCTTCTCT CATACTAAGG CCTCATCAAT 630 CTCATTACTT TAGTTCATCG AACCTTCTTT TATACCAAGA CATCATTATT AAC-AAGGTT 3963 || |||| | || | ||| | || CTTATTA-TA TAATATATCA AGT....... .......... .......... ...GAATTAG 659 TTTTTTTTCA AGATTTGGGA TTCAATAGCT TCATCATGC- ---TTATTTC ATCACAATTA 4019 || ||||| |||||||||| |||||||||| ||||||||| ||| ||| || |||||| GGTTCTTTCA AGATTTGGGA TTCAATAGCT TCATCATGCT TTGTTAATTC ATAACAATTT 719 TATAATCACA TTCATGCAAG CATACAATTA AGCATATAGA AGACTTTACA A 4070 ||||||| | ||||||||| ||||| | || |||||||||| |||||| | CATAATCATA ATCATGCAAG CATACCAATA AGCATATAGA CAGGTTTACA A 770 hqPGS_C09HBa0168F14.1-2+_SGN-E349977- (3086 3382,3444 3488,3521 3575,3668 3927,3958 4070) ******************************************************************************** EST sequence 237 -strand 239 n (File: SGN-E391780-) 1 ATCAACAAAT ACTATATCAT TAACAATTAC CGTCAAGTTC ACACATGAGG ACTCAAGCCT 61 CAATACCATA CTCATTTGGG AATCATGTTC ATTAGATTGA GTATATTAAC ATCTTTCAAG 121 ATTCATTATC TTTATTTCTC TTGTGTCGGT ACGTGACACT CCGCTCCCTC AATATTCATT 181 AATCCTCTTG TGTCGGTACG TGACACTCCG ATCCCCTAAA TCTATATGTC GGTTTGTGA Predicted gene structure (within gDNA segment 2173 to 4635): Exon 1 3171 3342 ( 172 n); cDNA 3 176 ( 174 n); score: 0.823 Intron 1 3343 3578 ( 236 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.73) Exon 2 3579 3639 ( 61 n); cDNA 177 239 ( 63 n); score: 0.770 MATCH C09HBa0168F14.1-2+ SGN-E391780- 0.809 233 0.975 C PGS_C09HBa0168F14.1-2+_SGN-E391780- (3171 3342,3579 3639) Alignment (genomic DNA sequence = upper lines): CACCATGTAC AAGAATCTTT GATAAATAAC GTCAAGTACA TTCATGAGGA CTCAAGCCTC 3230 || || ||| | ||| || | || || | ||||||| || |||||||| |||||||||| CAACAAATAC TA-TATCATT AACAATTACC GTCAAGTTCA CACATGAGGA CTCAAGCCTC 61 CATATCATAC TCATTTGGGA ATTAGGTTCA TTAGATTGAG TATATTAACA TCTTTCAAGA 3290 ||| ||||| |||||||||| || | ||||| |||||||||| |||||||||| |||||||||| AATACCATAC TCATTTGGGA ATCATGTTCA TTAGATTGAG TATATTAACA TCTTTCAAGA 121 TTCATCACCT TTA--T-TCT TGTGTCGGTA CGTGACACTC CGCTCCCTTA CTACTATGTG 3347 ||||| | || ||| | ||| |||||||||| |||||||||| |||||||| | || | TTCATTATCT TTATTTCTCT TGTGTCGGTA CGTGACACTC CGCTCCCTCA ATATT..... 176 TCGGAACGTG ACACTCCGAT CCCCTAGTTC TACGTGTCGG TTCGTGACAC CCGATCCCCT 3407 .......... .......... .......... .......... .......... .......... 176 AATTCTACGT GTCGGTTCGT GATACCCGAT CCCCTAATTC TACGTGTCGG TTCGTGACAC 3467 .......... .......... .......... .......... .......... .......... 176 CCGATCCCCT AATTCTACGT GTCGATTCGT GACACCCGAT CTCCTAATTC TACGTGTCGG 3527 .......... .......... .......... .......... .......... .......... 176 TTCGTGACAC CCGATCCCCT AATTTTACGT GTCGATTCGT GACACCCGAT CCCCTAATTC 3587 | |||| | .......... .......... .......... .......... .......... .CATTAATCC 185 T-ACGTGTCG GTTCGTGACA C-CCGATCCC CTAATTCTAC ATGTCGGTTC GTGA 3639 | |||||| || ||||||| | |||||||| |||| |||| ||||||||| |||| TCTTGTGTCG GTACGTGACA CTCCGATCCC CTAAATCTAT ATGTCGGTTT GTGA 239 hqPGS_C09HBa0168F14.1-2+_SGN-E391780- (3171 3342,3579 3639) ******************************************************************************** EST sequence 184 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 1842 to 5937): Exon 1 2792 2945 ( 154 n); cDNA 35 188 ( 154 n); score: 0.938 MATCH C09HBa0168F14.1-2+ SGN-E352844- 0.938 154 0.383 C PGS_C09HBa0168F14.1-2+_SGN-E352844- (2792 2945) Alignment (genomic DNA sequence = upper lines): TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC T-AATCTAAG 2850 |||||||||| |||||||| | |||||||||| |||||||| | || |||||| | |||||||| TTCCCAAAAT CTGGAAGTTA TCATCACAAG AACATCTA-C TTCGAATTAC TAAATCTAAG 93 AGTATCTAAG AAGCTAAAAT ACATAAAAAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 2910 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AGTATCTAAG AAGCTAAAAT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 153 GACATGAGGA GGAAGATCCA GTCCAAGCTA GAAGC 2945 ||||||| || ||||||||| |||||||||| ||||| GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGC 188 hqPGS_C09HBa0168F14.1-2+_SGN-E352844- (2792 2945) ******************************************************************************** EST sequence 246 -strand 717 n (File: SGN-E349726-) 1 TTATGTTCAT TAGATTGAGT ATATAACATC TTTCAAGATT CATTGTCTTT ATTTCTCTTG 61 TGTCGGTACG TGACATTCCG CTCCNTCATA TTCATTAATC TTCTTGTGTC GGTACGTGAT 121 ACTCTGATCC CCTAAATCTA CGTGTCGGAA CGTGACACTC CGATCCCCTA AATCTACGTG 181 TCGGTTCGTG ACACCTGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC CGATCCCCTA 241 AATCTACGTG TCGGTTCGTG ACACCCGATC CCCTAAATCT ACGTGTCGGT TCGTGACACC 301 CGATCCCCTA ATCTATGTGT TGGTTCGTGA CACCTGATCC CTTAATCTAC GTGTCGGTTT 361 GTGACACCCG ATCCCCTAAT TCTACGTGTC AGTTCGTGAC ACCCGATCCC CTAATCTCAT 421 TCTATCAATT CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCAATCTCAT TACTTTAGTT 481 CATCAAGCCT TCTCCCTTAC CAAGGCATCA TCATTAAAAA GAGATTAGGT TTTTACAAGA 541 TTTGGGATTC AATAACTTCA TCATGCTTAT ATAATAACAA TTATATAGTT ACATTCATGC 601 AAGCATACAA TTAAGCACAT AGCAGGGTTT ACAATATTAT CAATACATAT CATTCTCTAT 661 TAAGAGTTTA CTACGAATAT CGTAAGAGAA ACAATAACCT ACCTCCACCG AAGACTA Predicted gene structure (within gDNA segment 2606 to 6853): Exon 1 3252 3335 ( 84 n); cDNA 1 86 ( 86 n); score: 0.827 Intron 1 3336 3467 ( 132 n); Pd: 0.000 (s: 0.73), Pa: 0.000 (s: 0.58) Exon 2 3468 3834 ( 367 n); cDNA 87 454 ( 368 n); score: 0.862 Intron 2 3835 3893 ( 59 n); Pd: 0.610 (s: 0.88), Pa: 0.000 (s: 0.88) Exon 3 3894 4147 ( 254 n); cDNA 455 714 ( 260 n); score: 0.805 MATCH C09HBa0168F14.1-2+ SGN-E349726- 0.838 705 0.983 C PGS_C09HBa0168F14.1-2+_SGN-E349726- (3252 3335,3468 3834,3894 4147) Alignment (genomic DNA sequence = upper lines): TTAGGTTCAT TAGATTGAGT ATATTAACAT CTTTCAAGAT TCATCACCTT TA--T-TCTT 3308 ||| |||||| |||||||||| ||| |||||| |||||||||| |||| ||| || | |||| TTATGTTCAT TAGATTGAGT ATA-TAACAT CTTTCAAGAT TCATTGTCTT TATTTCTCTT 59 GTGTCGGTAC GTGACACTCC GCTCCCTTAC TACTATGTGT CGGAACGTGA CACTCCGATC 3368 |||||||||| |||||| ||| ||||| | GTGTCGGTAC GTGACATTCC GCTCCNT... .......... .......... .......... 86 CCCTAGTTCT ACGTGTCGGT TCGTGACACC CGATCCCCTA ATTCTACGTG TCGGTTCGTG 3428 .......... .......... .......... .......... .......... .......... 86 ATACCCGATC CCCTAATTCT ACGTGTCGGT TCGTGACACC CGATCCCCTA AT-TCTACGT 3487 | || | || || | || .......... .......... .......... .........C ATATTCATTA ATCTTCTTGT 107 GTCGATTCGT GACAC-CCGA TCTCCTAATT CTACGTGTCG GTTCGTGACA C-CCGATCCC 3545 |||| | ||| || || | || || ||||| | |||||||||| | ||||||| | |||||||| GTCGGTACGT GATACTCTGA TCCCCTAAAT CTACGTGTCG GAACGTGACA CTCCGATCCC 167 CTAATTTTAC GTGTCGATTC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC 3605 |||| | ||| |||||| ||| |||||||| | ||||||||| |||||||||| |||||||||| CTAAATCTAC GTGTCGGTTC GTGACACCTG ATCCCCTAAA TCTACGTGTC GGTTCGTGAC 227 ACCCGATCCC CTAATTCTAC ATGTCGGTTC GTGACACCCG ATCCCCTAAT TCTACGTGTC 3665 |||||||||| |||| ||||| ||||||||| |||||||||| ||||||||| |||||||||| ACCCGATCCC CTAAATCTAC GTGTCGGTTC GTGACACCCG ATCCCCTAAA TCTACGTGTC 287 AGTCCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTCC GTGACACCCG ATCCCCTAAT 3725 || |||||| |||||||||| |||| |||| |||| ||| | |||||||| | ||||| ||| GGTTCGTGAC ACCCGATCCC CTAA-TCTAT GTGTTGGTTC GTGACACCTG ATCCCTTAA- 345 TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC GTGACACCTG 3785 |||||||||| |||| ||||| |||||||||| |||||||||| ||||| |||| |||||||| | TCTACGTGTC GGTTTGTGAC ACCCGATCCC CTAATTCTAC GTGTCAGTTC GTGACACCCG 405 ATCCACTAAT CTCATTCTAT TAATTCATCA AGCCTTCTTT TATACCAAGG CATCATCAAT 3845 |||| ||||| |||||||||| ||||||||| |||||||| ||||||| ATCCCCTAAT CTCATTCTAT CAATTCATCA AGCCTTCTCC CTTACCAAG. .......... 454 CTCATCAATC TCATCACTTT AGTTCATCAA GCCTTCTTTT ATACCAAGGC ATCATCAATC 3905 || |||||||||| .......... .......... .......... .......... ........GC ATCATCAATC 466 TCATTACTTT AGTTCATCGA ACCTTCTTTT ATACCAAGAC ATCATTATTA ACAAG-G-TT 3963 |||||||||| |||||||| | |||||| ||||||| | ||||| |||| | ||| | || TCATTACTTT AGTTCATCAA GCCTTCTCCC TTACCAAGGC ATCATCATTA AAAAGAGATT 526 -TTTTTTTTC AAGATTTGGG ATTCAATAGC TTCATCATGC TTATTTCATC ACAATTATAT 4022 ||||| | |||||||||| |||||||| | |||||||||| |||| | || |||||||||| AGGTTTTTAC AAGATTTGGG ATTCAATAAC TTCATCATGC TTATATAATA ACAATTATAT 586 AATCACATTC ATGCAAGCAT ACAATTAAGC ATATAGAAGA CTTTACAATA CAACCCAACA 4082 | | |||||| |||||||||| |||||||||| | |||| || ||||||||| | ||| | AGTTACATTC ATGCAAGCAT ACAATTAAGC ACATAGCAGG GTTTACAATA TTA-TCAATA 645 CATATCATTC GCTATCAAGA GTTAACTACG AATA--GT-A TA-AAACCAT AACCTACCTC 4138 |||||||||| |||| |||| ||| |||||| |||| || | | |||| || |||||||||| CATATCATTC TCTATTAAGA GTTTACTACG AATATCGTAA GAGAAACAAT AACCTACCTC 705 CACCGAAGA 4147 ||||||||| CACCGAAGA 714 hqPGS_C09HBa0168F14.1-2+_SGN-E349726- (3252 3335,3468 3834,3894 4147) ******************************************************************************** EST sequence 6 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 1339 to 6622): Exon 1 2608 3020 ( 413 n); cDNA 40 447 ( 408 n); score: 0.907 Intron 1 3021 3298 ( 278 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0) Exon 2 3299 3313 ( 15 n); cDNA 448 462 ( 15 n); score: 0.867 PPA cDNA 13 1 MATCH C09HBa0168F14.1-2+ SGN-E370357+ 0.907 428 0.630 C PGS_C09HBa0168F14.1-2+_SGN-E370357+ (2608 3020,3299 3313) Alignment (genomic DNA sequence = upper lines): TTTAATGTCT CGATCCAAAT TGGGCCGCGA CTGGCACCCA CACTTACCCT CCTATGTGAG 2667 ||||||||| ||| |||||| | ||||| | ||||||||| |||||||||| |||||||||| TTTAATGTCA CGACCCAAAT CGAGCCGCAA GTGGCACCCA CACTTACCCT CCTATGTGAG 99 CGAACCAACC AATCTAAACC TCAACATTTC AATATAATAT CAACAGGAAG TAATGCGGAA 2727 |||||||||| ||| ||| ||||||||| ||||| | || || | | |||||||||| CGAACCAACC AATACAAAAT CCAACATTTC AATAT-A-AT -GACGGAATA TAATGCGGAA 156 GACTTAAACT CATTAATAAA AACCAATTCA ATAACTTCTA AAAACTCAAC AACTATTATT 2787 |||||||||| ||||||| || || ||||| | |||||||||| |||||||||| |||||||||| GACTTAAACT CATTAATGAA AATCAATTAA ATAACTTCTA AAAACTCAAC AACTATTATT 216 ATTCTTCCCA AAATCTGGAA GTCATCATCA CAAGAACATC TATCCTCAAA TTACTAA-TC 2846 | || |||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || A-TC--CCCA AAATCTGGAA GTCATCATCA CAAGAACATC TATCCTCAAA TTACTAATTC 273 TAAGAGTATC TAAGAAGCTA AAATACATAA AAAGCTAGTC CATGCCGGAA CTTCAAGGCA 2906 |||||||||| || |||||| |||| ||| |||||||||| |||||||||| |||||||||| TAAGAGTATC TAGAAAGCTA GAATAACTAA AAAGCTAGTC CATGCCGGAA CTTCAAGGCA 333 TCAAGACATG AGGAGGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAATCCG 2966 |||||||||| | || ||||| |||||||||| |||||||||| ||||||||| |||||||||| TCAAGACATG AAGAAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACA CTGAAATCCG 393 ATGTAATGAA GACTGGCTAG AGTTGCGGTT GAGTTGAAGA CGACGGCACG TTTGCTGCAC 3026 | ||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||| GTATAATGAA GACTGGCTAG AGTTGCGGTT GAGTTGAAGA CGACGGTACG TTTG...... 447 TCCACAAATA ACAAGGAAAG AAACATACAA GTAGGGGTCA GTACAAAACA CGGGTACTGA 3086 .......... .......... .......... .......... .......... .......... 447 GTAGATATCA TCGGACAACT CAAAATAGAA ACAATATATA TCAGATAATA TCATAAATCA 3146 .......... .......... .......... .......... .......... .......... 447 ACTACAATAC TCAATCTGTA GCAACACCAT GTACAAGAAT CTTTGATAAA TAACGTCAAG 3206 .......... .......... .......... .......... .......... .......... 447 TACATTCATG AGGACTCAAG CCTCCATATC ATACTCATTT GGGAATTAGG TTCATTAGAT 3266 .......... .......... .......... .......... .......... .......... 447 TGAGTATATT AACATCTTTC AAGATTCATC ACCTTTATTC TTGTGTC 3313 |||||||| ||||| .......... .......... .......... ..CTTTATTC GAGTGTC 462 hqPGS_C09HBa0168F14.1-2+_SGN-E370357+ (2608 3020) ******************************************************************************** EST sequence 186 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 1 to 3740): Exon 1 2613 3104 ( 492 n); cDNA 246 729 ( 484 n); score: 0.862 MATCH C09HBa0168F14.1-2+ SGN-E351546- 0.862 492 0.675 C PGS_C09HBa0168F14.1-2+_SGN-E351546- (2613 3104) Alignment (genomic DNA sequence = upper lines): TGTCTCGATC CAAAT-TGGG CCGCGACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 2671 |||| ||| | ||||| ||| |||| ||||| |||||||||| |||||||||| |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 305 CCAACCAATC TAAACCTCAA CATTTCAATA TAATATCAAC AGGAAGTAAT GCGGAAGACT 2731 |||||||||| ||||||| || ||||||||| ||||| |||| || ||||||| |||||||||| CCAACCAATC TAAACCTTAA CATTTCAATG TAATAGCAAC AGAAAGTAAT GCGGAAGACT 365 TAAACTCATT AATAAAAACC AATTCAATAA CTTCTAAAAA CTCAACAACT ATTATTATTC 2791 |||||||||| ||| || || ||||||| || || | | | | ||| | | |||| TAAACTCATT AAT---AA-- AA-TCAATAA CTACT-ATTA -T-TA-AAC- A-T-CTATTA 412 TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC TAA-TCTAAG 2850 ||||||||| |||||||||| |||||||||| |||||||| | | ||| ||| ||| |||||| TTCCCAAAAC CTGGAAGTCA TCATCACAAG AACATCTA-C TTTAAACTAC TAATTCTAAG 471 AGTATCTAAG AAGCT--AAA A-TACATAAA AAGCTAGTCC ATGCCGGAAC TTCAAGGCAT 2907 ||| |||||| ||||| ||| | ||||||| |||||||||| ||||||||| |||||||||| AGTTTCTAAG AAGCTAAAAA ATTACATAAG AAGCTAGTCC ATGCCGGAAG TTCAAGGCAT 531 CAAGACATGA GGAGGAAGAT CCAGTCCAAG CTAGAAGCGT TAGCTCACCC TGAA-ATCCG 2966 |||||||||| | |||||| |||||||||| |||||||||| |||||||||| |||| ||||| CAAGACATGA AGGAGAAGAT CCAGTCCAAG CTAGAAGCGT TAGCTCACCC TGAAGATCCG 591 ATGTAATGAA GACTGGCTAG AGTTGCGGTT GAGTTGAAGA CGACGGCACG TTTGCTGCAC 3026 ||| | ||| |||||||| | |||| | ||| |||| ||||| ||||||||| |||||||||| GTGTGACGAA GACTGGCTTG AGTTACTGTT GAGTCGAAGA TGACGGCACG TTTGCTGCAC 651 TCCACAAATA ACAAGGAAAG AAACATACAA GTAGGGGTCA GTACAAAACA CGGGTACTGA 3086 |||||||||| |||| | | ||||||| || |||||||||| |||||||||| ||| |||||| TCCACAAATA CCAAGAAGAA AAACATAAAA GTAGGGGTCA GTACAAAACA CGGCTACTGA 711 GTAGATATCA TCGGACAA 3104 |||||||||| |||| ||| GTAGATATCA TCGGCCAA 729 hqPGS_C09HBa0168F14.1-2+_SGN-E351546- (2613 3104) ******************************************************************************** EST sequence 223 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 817 to 3740): Exon 1 2613 3104 ( 492 n); cDNA 97 580 ( 484 n); score: 0.864 MATCH C09HBa0168F14.1-2+ SGN-E356206- 0.864 492 0.848 C PGS_C09HBa0168F14.1-2+_SGN-E356206- (2613 3104) Alignment (genomic DNA sequence = upper lines): TGTCTCGATC CAAAT-TGGG CCGCGACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 2671 |||| ||| | ||||| ||| |||| ||||| |||||||||| |||||||||| |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 156 CCAACCAATC TAAACCTCAA CATTTCAATA TAATATCAAC AGGAAGTAAT GCGGAAGACT 2731 |||||||||| ||||||| || ||||||||| ||||| |||| || ||||||| |||||||||| CCAACCAATC TAAACCTTAA CATTTCAATG TAATAGCAAC AGAAAGTAAT GCGGAAGACT 216 TAAACTCATT AATAAAAACC AATTCAATAA CTTCTAAAAA CTCAACAACT ATTATTATTC 2791 |||||||||| ||| || || ||||||| || || | | | | ||| | | |||| TAAACTCATT AAT---AA-- AA-TCAATAA CTACT-ATTA -T-TA-AAC- A-T-CTATTA 263 TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC TAA-TCTAAG 2850 ||||||||| |||||||||| |||||||||| |||||||| | | ||| ||| ||| |||||| TTCCCAAAAC CTGGAAGTCA TCATCACAAG AACATCTA-C TTTAAACTAC TAATTCTAAG 322 AGTATCTAAG AAGCT--AAA A-TACATAAA AAGCTAGTCC ATGCCGGAAC TTCAAGGCAT 2907 ||| |||||| ||||| ||| | ||||||| |||||||||| ||||||||| |||||||||| AGTTTCTAAG AAGCTAAAAA ATTACATAAG AAGCTAGTCC ATGCCGGAAG TTCAAGGCAT 382 CAAGACATGA GGAGGAAGAT CCAGTCCAAG CTAGAAGCGT TAGCTCACCC TGAA-ATCCG 2966 |||||||||| | |||||| |||||||||| |||||||||| |||||||||| |||| ||||| CAAGACATGA AGGAGAAGAT CCAGTCCAAG CTAGAAGCGT TAGCTCACCC TGAAGATCCG 442 ATGTAATGAA GACTGGCTAG AGTTGCGGTT GAGTTGAAGA CGACGGCACG TTTGCTGCAC 3026 ||| | ||| |||||||| | |||| | ||| |||| ||||| ||||||||| |||||||||| GTGTGACGAA GACTGGCTTG AGTTACTGTT GAGTCGAAGA TGACGGCACG TTTGCTGCAC 502 TCCACAAATA ACAAGGAAAG AAACATACAA GTAGGGGTCA GTACAAAACA CGGGTACTGA 3086 |||||||||| ||||| | | ||||||| || |||||||||| |||||||||| ||| |||||| TCCACAAATA ACAAGAAGAA AAACATAAAA GTAGGGGTCA GTACAAAACA CGGCTACTGA 562 GTAGATATCA TCGGACAA 3104 |||||||||| |||| ||| GTAGATATCA TCGGCCAA 580 hqPGS_C09HBa0168F14.1-2+_SGN-E356206- (2613 3104) ******************************************************************************** EST sequence 231 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 67 to 3740): Exon 1 2613 3104 ( 492 n); cDNA 172 655 ( 484 n); score: 0.862 MATCH C09HBa0168F14.1-2+ SGN-E356696- 0.862 492 0.751 C PGS_C09HBa0168F14.1-2+_SGN-E356696- (2613 3104) Alignment (genomic DNA sequence = upper lines): TGTCTCGATC CAAAT-TGGG CCGCGACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 2671 |||| ||| | ||||| ||| |||| ||||| |||||||||| ||||||| || |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCNTA TGTGAGCGAA 231 CCAACCAATC TAAACCTCAA CATTTCAATA TAATATCAAC AGGAAGTAAT GCGGAAGACT 2731 |||||||||| ||||||| || ||||||||| ||||| |||| || ||||||| |||||||||| CCAACCAATC TAAACCTTAA CATTTCAATG TAATAGCAAC AGAAAGTAAT GCGGAAGACT 291 TAAACTCATT AATAAAAACC AATTCAATAA CTTCTAAAAA CTCAACAACT ATTATTATTC 2791 |||||||||| ||| || || ||||||| || || | | | | ||| | | |||| TAAACTCATT AAT---AA-- AA-TCAATAA CTACT-ATTA -T-TA-AAC- A-T-CTATTA 338 TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC TAA-TCTAAG 2850 ||||||||| |||||||||| |||||||||| |||||||| | | ||| ||| ||| |||||| TTCCCAAAAC CTGGAAGTCA TCATCACAAG AACATCTA-C TTTAAACTAC TAATTCTAAG 397 AGTATCTAAG AAGCT--AAA A-TACATAAA AAGCTAGTCC ATGCCGGAAC TTCAAGGCAT 2907 ||| |||||| ||||| ||| | ||||||| |||||||||| ||||||||| |||||||||| AGTTTCTAAG AAGCTAAAAA ATTACATAAG AAGCTAGTCC ATGCCGGAAG TTCAAGGCAT 457 CAAGACATGA GGAGGAAGAT CCAGTCCAAG CTAGAAGCGT TAGCTCACCC TGAA-ATCCG 2966 |||||||||| | |||||| |||||||||| |||||||||| |||||||||| |||| ||||| CAAGACATGA AGGAGAAGAT CCAGTCCAAG CTAGAAGCGT TAGCTCACCC TGAAGATCCG 517 ATGTAATGAA GACTGGCTAG AGTTGCGGTT GAGTTGAAGA CGACGGCACG TTTGCTGCAC 3026 ||| | ||| |||||||| | |||| | ||| |||| ||||| ||||||||| |||||||||| GTGTGACGAA GACTGGCTTG AGTTACTGTT GAGTCGAAGA TGACGGCACG TTTGCTGCAC 577 TCCACAAATA ACAAGGAAAG AAACATACAA GTAGGGGTCA GTACAAAACA CGGGTACTGA 3086 |||||||||| ||||| | | ||||||| || |||||||||| |||||||||| ||| |||||| TCCACAAATA ACAAGAAGAA AAACATAAAA GTAGGGGTCA GTACAAAACA CGGCTACTGA 637 GTAGATATCA TCGGACAA 3104 |||||||||| |||| ||| GTAGATATCA TCGGCCAA 655 hqPGS_C09HBa0168F14.1-2+_SGN-E356696- (2613 3104) ******************************************************************************** EST sequence 101 +strand 710 n (File: SGN-E392027+) 1 CCACAGCCCC AGTGGCTGGC TCAGTCGCAC CCTGTCCCGC CGGTGCTGGT GTTGATGCTG 61 GCGTAGTCGT TGCTCTAGTT CTAACCATCT GCGAAATAGA GTGAAGATGG TCAGATACCA 121 ATTTGTATCA CCTAGATACC AATTGGACCC AAGTAATAGC ACGAAAGAAG AAAGAATGGA 181 ATTTTCCAAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAG GCATCCCCCT ACCGTTCCTT 241 AAGACTCTAC TAGACTCGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 301 AGTTTGTCAC GACCAAAACC GGGTTGCGAC TGGCACCCAC ACTTACCCTC CTATGTGAGC 361 GAACCAACCA ATCTAACCTT AACATTTCAA TATAATATCA ACAGAAAGTA ATGTGGAAGA 421 CTTAAACTCA TTAAATACAG ACCAATTCAT TAACTTCTAA AATTCAACAT CTATTATTCC 481 CCAAAATCTG GAAGTCATCA CCACAAGAAC ATCTACGATC AAATGACTAA ACTAAGAGTA 541 GTCTAAAAGC TAAAAATACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 601 TTGAAGAAGA AGATCCAGTC CAAGCTAGAA GCATTAGCTC ACCCTGAATT TCCGATGTAG 661 TAAGACTGGC TTGAATTACT GTTGAGTTGA ACACGATGGC ACGTTTGCTG Predicted gene structure (within gDNA segment 1 to 4335): Exon 1 2613 3023 ( 411 n); cDNA 305 710 ( 406 n); score: 0.869 MATCH C09HBa0168F14.1-2+ SGN-E392027+ 0.869 411 0.579 C PGS_C09HBa0168F14.1-2+_SGN-E392027+ (2613 3023) Alignment (genomic DNA sequence = upper lines): TGTCTCGATC CAAATTGGGC CGCGACTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 2672 |||| ||| | ||| ||| ||||||||| |||||||||| |||||||||| |||||||||| TGTCACGACC AAAACCGGGT TGCGACTGGC ACCCACACTT ACCCTCCTAT GTGAGCGAAC 364 CAACCAATCT AAACCTCAAC ATTTCAATAT AATATCAACA GGAAGTAATG CGGAAGACTT 2732 |||||||||| ||||| ||| |||||||||| |||||||||| | |||||||| ||||||||| CAACCAATCT -AACCTTAAC ATTTCAATAT AATATCAACA GAAAGTAATG TGGAAGACTT 423 AAACTCATT- AATAAAAACC AATTCAATAA CTTCTAAAAA CTCAACAACT ATTATTATTC 2791 ||||||||| |||| | ||| |||||| ||| ||||| |||| ||||| | | |||||||| AAACTCATTA AATACAGACC AATTCATTAA CTTCT-AAAA TTCAAC-A-T -CTATTATTC 479 TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC TAATCTAAGA 2851 |||||||| |||||||||| ||| |||||| |||||||| |||||| || ||| |||||| --CCCAAAAT CTGGAAGTCA TCACCACAAG AACATCTACG ATCAAATGAC TAAACTAAGA 537 GTA-TCTAAG AAGCT-AAAA TACATAAAAA GCTAGTCCAT GCCGGAACTT CAAGGCATCA 2909 ||| ||||| ||||| |||| ||||||| || |||||||||| ||||||| || |||||||||| GTAGTCTAA- AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAAGTT CAAGGCATCA 596 AGACATGAGG AGGAAGATCC AGTCCAAGCT AGAAGCGTTA GCTCACCCTG AA-ATCCGAT 2968 |||| ||| | | |||||||| |||||||||| |||||| ||| |||||||||| || |||||| AGACTTGAAG AAGAAGATCC AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT 656 GTAATGAAGA CTGGCTAGAG TTGCGGTTGA GTTGAAGACG ACGGCACGTT TGCTG 3023 ||| | |||| |||||| || || | ||||| |||||| ||| | |||||||| ||||| GTAGT-AAGA CTGGCTTGAA TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTG 710 hqPGS_C09HBa0168F14.1-2+_SGN-E392027+ (2613 3023) ******************************************************************************** EST sequence 164 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 1814 to 4042): Exon 1 2754 3011 ( 258 n); cDNA 1 255 ( 255 n); score: 0.936 MATCH C09HBa0168F14.1-2+ SGN-E373117- 0.936 258 0.863 C PGS_C09HBa0168F14.1-2+_SGN-E373117- (2754 3011) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATTCTT CCCAAAATCT GGAAGTCATC 2813 || | | |||||||||| |||||||||| ||||| || |||||||||| |||||||||| TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTA-TC-- CCCAAAATCT GGAAGTCATC 57 ATCACAAGAA CATCTATCCT CAAATTACT- AATCTAAGAG TATCTAAGAA GCTAAAATAC 2872 |||||||||| |||||| | | ||||||||| |||||||||| |||||||||| |||||||||| ATCACAAGAA CATCTA-CTT CAAATTACTA AATCTAAGAG TATCTAAGAA GCTAAAATAC 116 ATAAAAAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA CATGAGGAGG AAGATCCAGT 2932 ||||| |||| |||||||||| |||||||||| |||||||||| ||||| || | |||||||||| ATAAACAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA CATGAAGAAG AAGATCCAGT 176 CCAAGCTAGA AGCGTTAGCT CACCCTGAAA TCCGATGTAA TGAAGACTGG CTAGAGTTGC 2992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGCTAGA AGCGTTAGCT CACCCTGAAA TCCGATGTAA TGAAGACTGG CTAGAGTTGC 236 GGTTGAGTTG AAGACGACG 3011 |||||||||| ||||||||| GGTTGAGTTG AAGACGACG 255 hqPGS_C09HBa0168F14.1-2+_SGN-E373117- (2754 3011) ******************************************************************************** EST sequence 193 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 2063 to 3575): Exon 1 2754 2975 ( 222 n); cDNA 1 219 ( 219 n); score: 0.917 MATCH C09HBa0168F14.1-2+ SGN-E298638- 0.917 222 1.014 C PGS_C09HBa0168F14.1-2+_SGN-E298638- (2754 2975) Alignment (genomic DNA sequence = upper lines): TTCAATAACT TCTAAAAACT CAACAACTAT TATTATTCTT CCCAAAATCT GGAAGTCATC 2813 || | | |||||||||| |||||||||| ||||| || |||||||||| || ||||||| TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTA-TC-- CCCAAAATCT GGCAGTCATC 57 ATCACAAGAA CATCTATCCT CAAATTACT- AATCTAAGAG TATCTAAGAA GCTAAAATAC 2872 |||||||||| ||| || | | ||||||||| |||||||||| |||||||||| |||||||||| ATCACAAGAA CATGTA-CTT CAAATTACTA AATCTAAGAG TATCTAAGAA GCTAAAATAC 116 ATAAAAAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA CATGAGGAGG AAGATCCAGT 2932 ||||| |||| |||||||||| |||||||||| |||||||||| ||||| || | |||||||||| ATAAACAGCT AGTCCATGCC GGAACTTCAA GGCATCAAGA CATGAAGAAG AAGATCCAGT 176 CCAAGCTAGA AGCGTTAGCT CACCCTGAAA TCCGATGTAA TGA 2975 |||||||||| |||||||||| |||||||||| |||||||||| ||| CCAAGCTAGA AGCGTTAGCT CACCCTGAAA TCCGATGTAA TGA 219 hqPGS_C09HBa0168F14.1-2+_SGN-E298638- (2754 2975) ******************************************************************************** EST sequence 180 -strand 405 n (File: SGN-E336814-) 1 TTTTTTTTTT TAATAAAATC AATAACTATT ATTATCCCCA AAATCTGGAA GTCATCACCA 61 CAAGAACATC TATGATCAAA GTACTAAACT AAGAGTGTTC TAAAAAGCTA AAATACAAGA 121 AAGCTAGTCC ATGCCGGAAC TTCAAGACAT CAAGACATGA AGAGGAAGAT CCAGTCCAAG 181 CTAGAAACAT TAGCTCACCT TAATATCCGG AATAATGAAG ACTGGCTAGA GTTACTGTTG 241 AGTCGAAGAT GACGGCACGT TTGCTCTCTT GTGTGATTTG CAAGCTATTG CAAAGGAGTA 301 GTTGCGGGTT TCCTTGTCAT AAAAAATAAT GCAAGGGAAA GCAGAAGATA ATGAAAATTA 361 GCAATATGTC AATCCATGAT CATGAAGTGC TTTGTTTGCT TTGGG Predicted gene structure (within gDNA segment 1077 to 5733): Exon 1 2763 3022 ( 260 n); cDNA 9 265 ( 257 n); score: 0.871 MATCH C09HBa0168F14.1-2+ SGN-E336814- 0.871 260 0.642 C PGS_C09HBa0168F14.1-2+_SGN-E336814- (2763 3022) Alignment (genomic DNA sequence = upper lines): TTCTAAAAAC TCAACAACTA TTATTATTCT TCCCAAAATC TGGAAGTCAT CATCACAAGA 2822 || | ||| |||| ||||| ||||||| | ||||||||| |||||||||| || ||||||| TTTAATAAAA TCAATAACTA TTATTAT-C- -CCCAAAATC TGGAAGTCAT CACCACAAGA 65 ACATCTATCC TCAAATTACT AATCTAAGAG T-ATCTAAGA AGCTAAAATA CATAAAAAGC 2881 |||||||| ||||| |||| || ||||||| | ||||| | |||||||||| || | ||||| ACATCTATGA TCAAAGTACT AAACTAAGAG TGTTCTAAAA AGCTAAAATA CA-AGAAAGC 124 TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATGAGGAG GAAGATCCAG TCCAAGCTAG 2941 |||||||||| |||||||||| || ||||||| |||||| ||| |||||||||| |||||||||| TAGTCCATGC CGGAACTTCA AGACATCAAG ACATGAAGAG GAAGATCCAG TCCAAGCTAG 184 AAGCGTTAGC TCACCCTGAA ATCCGATGTA ATGAAGACTG GCTAGAGTTG CGGTTGAGTT 3001 || | ||||| ||||| | | ||||| || |||||||||| ||||||||| | ||||||| AAACATTAGC TCACCTTAAT ATCCGGAATA ATGAAGACTG GCTAGAGTTA CTGTTGAGTC 244 GAAGACGACG GCACGTTTGC T 3022 ||||| |||| |||||||||| | GAAGATGACG GCACGTTTGC T 265 hqPGS_C09HBa0168F14.1-2+_SGN-E336814- (2763 3022) ******************************************************************************** EST sequence 41 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 1834 to 4062): Exon 1 2763 3011 ( 249 n); cDNA 9 254 ( 246 n); score: 0.958 MATCH C09HBa0168F14.1-2+ SGN-E373116+ 0.958 249 0.833 C PGS_C09HBa0168F14.1-2+_SGN-E373116+ (2763 3011) Alignment (genomic DNA sequence = upper lines): TTCTAAAAAC TCAACAACTA TTATTATTCT TCCCAAAATC TGGAAGTCAT CATCACAAGA 2822 |||||||||| |||||||||| |||||| || ||||||||| |||||||||| |||||||||| TTCTAAAAAC TCAACAACTA TTATTA-TC- -CCCAAAATC TGGAAGTCAT CATCACAAGA 65 ACATCTATCC TCAAATTACT -AATCTAAGA GTATCTAAGA AGCTAAAATA CATAAAAAGC 2881 ||||||| | |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| ACATCTA-CT TCAAATTACT AAATCTAAGA GTATCTAAGA AGCTAAAATA CATAAACAGC 124 TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATGAGGAG GAAGATCCAG TCCAAGCTAG 2941 |||||||||| |||||||||| |||||||||| |||||| || |||||||||| |||||||||| TAGTCCATGC CGGAACTTCA AGGCATCAAG ACATGAAGAA GAAGATCCAG TCCAAGCTAG 184 AAGCGTTAGC TCACCCTGAA ATCCGATGTA ATGAAGACTG GCTAGAGTTG CGGTTGAGTT 3001 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCGTTAGC TCACCCTGAA ATCCGATGTA ATGAAGACTG GCTAGAGTTG CGGTTGAGTT 244 GAAGACGACG 3011 |||||||||| GAAGACGACG 254 hqPGS_C09HBa0168F14.1-2+_SGN-E373116+ (2763 3011) ******************************************************************************** EST sequence 7 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 798 to 5591): Exon 1 2787 3033 ( 247 n); cDNA 58 305 ( 248 n); score: 0.877 PPA cDNA 19 1 MATCH C09HBa0168F14.1-2+ SGN-E222578+ 0.877 247 0.569 C PGS_C09HBa0168F14.1-2+_SGN-E222578+ (2787 3033) Alignment (genomic DNA sequence = upper lines): TATTCTTCCC AAAATCTGGA AGTCATCATC ACAAGAACAT CTATCCTCAA ATTACTAA-T 2845 |||| ||||| |||| ||||| |||||||||| |||||||||| ||| | | || | |||||| | TATTATTCCC AAAACCTGGA AGTCATCATC ACAAGAACAT CTA-CTTTAA ACTACTAATT 116 CTAAGAGTAT CTAAGAAGCT AA-AATACAT AAAAAGCTAG TCCATGCCGG AACTTCAAGG 2904 |||||||| | |||| ||||| || ||||||| || ||||||| |||||||||| | ||||||| CTAAGAGTTT CTAA-AAGCT AAAAATACAT AAGAAGCTAG TCCATGCCGG AGGTTCAAGG 175 CATCAAGACA TGAGGAGGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAA-AT 2963 |||||||||| ||| | ||| |||||||||| |||||||| | |||||||||| ||||||| || CATCAAGACA TGAAGGAGAA GATCCAGTCC AAGCTAGACG CGTTAGCTCA CCCTGAAGAT 235 CCGATGTAAT GAAGACTGGC TAGAGTTGCG GTTGAGTTGA AGACGACGGC ACGTTTGCTG 3023 ||| ||| | |||||||||| | ||||| | ||||||| || ||| |||||| |||||||||| CCGGTGTGAC GAAGACTGGC TTGAGTTACT GTTGAGTCGA AGATGACGGC ACGTTTGCTG 295 CACTCCACAA 3033 |||||||||| CACTCCACAA 305 hqPGS_C09HBa0168F14.1-2+_SGN-E222578+ (2787 3033) ******************************************************************************** EST sequence 113 -strand 605 n (File: SGN-E347579-) 1 ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 61 GTGACACCTG ATCCCCTAAT CTACGTGCCG GTTCGTGACA CCCGATCCCC TAATTCTACG 121 TGCCAGTTCG TGACACCCGA TCCCCTAATT CTACGTGTCG GTTCGTGACA CCCGATCCCC 181 TGCATGTGTC GGTACGTGAC ACTCCGATCC ACTAATATCA TTCTGTAAAT CATCAGGCCT 241 TCTCTATACC AAGGCATCAT CAATCCCATT ACTTTTATTC ATCAAGCCTT CTTCTATACC 301 AAGGCATCAT CATTAATAAG AGATTAGATT TTTATCAAGA TTTGGGATTC AATAACTTCA 361 TCATGCTTAA TATAATCACA ATTATATAAT CACGTTCATG CATGCATACA ATTAAGCATA 421 TAGCAGGGTT TACAATACTA CCAATACATA TCATTCTCTA TTAAGAGTTT ACTATGAAAG 481 CATGAAAACC ATAACCTACC TCCACCGAAG ATTAGTGATC AAGCAAGCAA ATTTTTCTCC 541 AAGCTTTGTT TCTCCCTTCT CGTTCGATTC TTCCTCTCTC TCTTGTTCTT TCTATTTTCT 601 TTATT Predicted gene structure (within gDNA segment 2966 to 6478): Exon 1 3576 3834 ( 259 n); cDNA 1 253 ( 253 n); score: 0.898 Intron 1 3835 3893 ( 59 n); Pd: 0.610 (s: 0.86), Pa: 0.000 (s: 0.88) Exon 2 3894 4158 ( 265 n); cDNA 254 522 ( 269 n); score: 0.823 MATCH C09HBa0168F14.1-2+ SGN-E347579- 0.860 524 0.866 C PGS_C09HBa0168F14.1-2+_SGN-E347579- (3576 3834,3894 4158) Alignment (genomic DNA sequence = upper lines): ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC ATGTCGGTTC 3635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC CTAATTCTAC GTGTCGGTTC 60 GTGACACCCG ATCCCCTAAT TCTACGTGTC AGTCCGTGAC ACCCGATCCC CTAATTCTAC 3695 |||||||| | ||||||||| |||||||| | || |||||| |||||||||| |||||||||| GTGACACCTG ATCCCCTAA- TCTACGTGCC GGTTCGTGAC ACCCGATCCC CTAATTCTAC 119 GTGTCGGTCC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 3755 ||| | || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCAGTTC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 179 CTAATTCTAC GTGTCGGTTC GTGACAC-CT GATCCACTAA TCTCATTCTA TTAATTCATC 3814 | | | | |||||||| | ||||||| | |||||||||| | ||||||| ||| ||||| C---TGC-AT GTGTCGGTAC GTGACACTCC GATCCACTAA TATCATTCT- GTAAATCATC 234 AAGCCTTCTT TTATACCAAG GCATCATCAA TCTCATCAAT CTCATCACTT TAGTTCATCA 3874 | |||||| | ||||||||| AGGCCTTC-T CTATACCAAG .......... .......... .......... .......... 253 AGCCTTCTTT TATACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCG AACCTTCTTT 3934 | |||||||||| | |||||||| | |||||| | ||||||| .......... .........G CATCATCAAT CCCATTACTT TTATTCATCA AGCCTTCTTC 294 TATACCAAGA CATCATTATT AACAAG-G-T T--TTTTTTT TCAAGATTTG GGATTCAATA 3990 ||||||||| |||||| ||| || ||| | | | ||||| |||||||||| |||||||||| TATACCAAGG CATCATCATT AATAAGAGAT TAGATTTTTA TCAAGATTTG GGATTCAATA 354 GCTTCATCAT GCTT-ATTTC ATCACAATTA TATAATCACA TTCATGCAAG CATACAATTA 4049 ||||||||| |||| || | |||||||||| ||||||||| |||||||| | |||||||||| ACTTCATCAT GCTTAATATA ATCACAATTA TATAATCACG TTCATGCATG CATACAATTA 414 AGCATATAGA AGACTTTACA ATACAACCCA ACACATATCA TTCGCTATCA AGAGTTAACT 4109 ||||||||| || |||||| |||| | ||| | |||||||| ||| |||| | |||||| ||| AGCATATAGC AGGGTTTACA ATACTA-CCA ATACATATCA TTCTCTATTA AGAGTTTACT 473 ACGAATAGTA T-AAAACCAT AACCTACCTC CACCGAAGAA TTTCGATCAA 4158 | ||| || | | |||||||| |||||||||| ||||||||| | |||||| ATGAA-AGCA TGAAAACCAT AACCTACCTC CACCGAAGAT TAGTGATCAA 522 hqPGS_C09HBa0168F14.1-2+_SGN-E347579- (3576 3834,3894 4158) ******************************************************************************** EST sequence 103 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 1694 to 5379): Exon 1 2781 3379 ( 599 n); cDNA 38 638 ( 601 n); score: 0.806 PPA cDNA 18 1 MATCH C09HBa0168F14.1-2+ SGN-E546506+ 0.806 599 0.821 C PGS_C09HBa0168F14.1-2+_SGN-E546506+ (2781 3379) Alignment (genomic DNA sequence = upper lines): TATTATTATT CTTCCCAAAA TCTGGAAGTC ATCATCACAA GAACATCTAT CCTCAAATTA 2840 |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| ||||||||| TATTATTATT ATCCCCAAAA TCTGGAAGTC ATCATCACAA GAACATCTAT -CTCAAATTA 96 CTAATCTAAG AGTATCTAAG AAGCTAAAAT ACATAAAAAG CTAGTCCATG CCGGAACTTC 2900 || | ||| | | | |||||| || | ||||| | ||||||| |||||||||| |||||| ||| CTTAACTAGG AATGTCTAAG AA-C-AAAAT AACTAAAAAG CTAGTCCATG CCGGAAATTC 154 AAGGCATCAA GACATGAGGA GGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA 2960 |||||||||| ||| ||| || ||||| ||| |||||||||| || || |||| |||||||||| AAGGCATCAA GACTTGAAGA AGAAGACCCA GTCCAAGCTA GACGCATTAG CTCACCCTGA 214 A--ATCCGAT GTAATGAAGA CTGGCTAGAG TTGCGGTTGA GTTGAAGACG ACGGCACGTT 3018 | |||||| | | |||||| ||||||||| | | ||||| ||||||| | |||| ||||| ATTTTCCGAT GAAGTGAAGA CTGGCTAGAT CTACTGTTGA GTTGAAGTTG ACGGAACGTT 274 TGCTGCACTC CACAAATAAC AAGGAAAGAA ACATACAAGT AGGGGTCAGT ACAAAACACG 3078 ||||||| | |||||||||| || || || |||| |||| |||||||||| || || ||| TGCTGCATTA CACAAATAAC AAAGAGGAAA ACATGAAAGT AGGGGTCAGT AC-AACCACA 333 GGTACTGAGT AGATATCATC GGACAACTCA AAATA-GAAA CAATATATAT CAGATAATAT 3137 ||||||||| |||||||||| || ||||||| ||||| | || || ||||||| || |||||| CGTACTGAGT AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATATAT CA-ATAATAA 392 CATAAATCAA CTACAATACT CAATCTGTAG CAACACCATG TACAAGAATC TTTGATAAAT 3197 |||||||| |||||||||| ||| ||||| ||| | || | | | || | |||| | TGTAAATCAA CTACAATACT CAACATGTAG CAATAACA-C CATGA-ATTC ATCAATAACT 450 AACGTCAAGT ACATTCATGA GGACTCAAGC CTCCATATCA TACTCATTTG GGAATTAGGT 3257 | | ||| || ||||| |||||||||| ||| ||| || |||||||||| ||||||| || ACAACCGAGT TCACACATGA GGACTCAAGC CTCAATACCA TACTCATTTG GGAATTAAGT 510 TCATTAGATT GAGTATATT- AACATCTTTC AAGATTCATC ACCTTT-AT- -TCTTGTGTC 3313 |||||||||| ||||||||| | ||||||| ||||||||| | |||| | ||||||||| TCATTAGATT GAGTATATTC ATTATCTTTC AAGATTCATT ATCTTTCTTC CTCTTGTGTC 570 GGTACGTGAC ACTCCGCTCC -C--TTACTA -CTATGTGTC GGAACGTGAC ACTCCGATCC 3369 |||||||||| |||||| ||| | || ||| | ||| | |||||||| | |||||||||| GGTACGTGAC ACTCCGATCC TCTATTTCTA TCCTGGTGCC GGAACGTGGC ACTCCGATCC 630 CCTAGTTCTA 3379 | | ||||| TC-A-TTCTA 638 hqPGS_C09HBa0168F14.1-2+_SGN-E546506+ (2781 3379) ******************************************************************************** EST sequence 94 +strand 337 n (File: SGN-E357033+) 1 ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 61 AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTATATCATT AACAATTACC 121 GTCACGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATCATGTTCA 181 TTAGATTTAG TATATTAACA TCTTTCAAGA TTCATTATCT TTATTTCTCT TGTGACGGAA 241 CATGACATTC CGCTCCCTCA TATTCATTAA TCCTCTTGTG TGAACACATG ACACTCCGAT 301 CCCCTAAATC TACATGACAG TTTCATGAAC GCTATCC Predicted gene structure (within gDNA segment 1293 to 5125): Exon 1 3082 3335 ( 254 n); cDNA 1 258 ( 258 n); score: 0.805 MATCH C09HBa0168F14.1-2+ SGN-E357033+ 0.805 254 0.754 C PGS_C09HBa0168F14.1-2+_SGN-E357033+ (3082 3335) Alignment (genomic DNA sequence = upper lines): ACTGAGTAGA TATCATCGGA CAACTCAAAA TAGAAA-CAA TATATATCAG ATAATATCAT 3140 ||||| |||| |||||||| |||||||||| |||||| ||| ||||||||| | |||||| ACTGAATAGA TATCATCGCC CAACTCAAAA TAGAAATCAA TATATATCAA GNATTATCAT 60 -AAATCAACT ACAATACTCA ATCTGTAGCA ACACCATGTA CAAGAATCTT TGATAAATAA 3199 ||||||||| | ||||||| | ||||||| ||| || | | | | ||| | | | || || AAAATCAACT ATGATACTCA ACATGTAGCA ACAACAAGCA CTA-TATCAT TAACAATTAC 119 CGTCAAGTAC ATTCATGAGG ACTCAAGCCT CCATATCATA CTCATTTGGG AATTAGGTTC 3259 ||||| || | | ||||||| |||||||||| | ||| |||| |||||||||| ||| | |||| CGTCACGTTC ACACATGAGG ACTCAAGCCT CAATACCATA CTCATTTGGG AATCATGTTC 179 ATTAGATTGA GTATATTAAC ATCTTTCAAG ATTCATCACC TTTA--T-TC TTGTGTCGGT 3316 |||||||| | |||||||||| |||||||||| |||||| | | |||| | || ||||| ||| ATTAGATTTA GTATATTAAC ATCTTTCAAG ATTCATTATC TTTATTTCTC TTGTGACGGA 239 ACGTGACACT CCGCTCCCT 3335 || ||||| | ||||||||| ACATGACATT CCGCTCCCT 258 hqPGS_C09HBa0168F14.1-2+_SGN-E357033+ (3082 3335) ******************************************************************************** EST sequence 236 -strand 402 n (File: SGN-E357559-) 1 TGTGTTGGTT CGTGACACCT GATCCCTTAA TCTACGTGTC GGTTTGTGAC ACCCGATCCC 61 CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 121 AGCCTTCTCC CTTACCAAGG CATCATCAAT CTCATTACTT TAGTTCATCA AGCCTTCTCC 181 CTTACCAAGG CATCATCATT AAAAAGAGAT TAGGTTTTTA CAAGATTTGG GATTCAATAA 241 CTTCATCATG CTTATATAAT AACAATTATA TAGTTACATT CATGCAAGCA TACAATTAAG 301 CACATAGCAG GGTTTACAAT ATTATCAATA CATATCATTC TCTATTAAGA GTTTACTACG 361 AATATCGTAA GAGAAACAAT AACCTACCTC CACCGAAGAC TA Predicted gene structure (within gDNA segment 2645 to 6853): Exon 1 3696 3834 ( 139 n); cDNA 2 139 ( 138 n); score: 0.899 Intron 1 3835 3893 ( 59 n); Pd: 0.610 (s: 0.88), Pa: 0.000 (s: 0.88) Exon 2 3894 4147 ( 254 n); cDNA 140 399 ( 260 n); score: 0.805 MATCH C09HBa0168F14.1-2+ SGN-E357559- 0.838 393 0.978 C PGS_C09HBa0168F14.1-2+_SGN-E357559- (3696 3834,3894 4147) Alignment (genomic DNA sequence = upper lines): GTGTCGGTCC GTGACACCCG ATCCCCTAAT TCTACGTGTC GGTTCGTGAC ACCCGATCCC 3755 |||| ||| | |||||||| | ||||| ||| |||||||||| |||| ||||| |||||||||| GTGTTGGTTC GTGACACCTG ATCCCTTAA- TCTACGTGTC GGTTTGTGAC ACCCGATCCC 60 CTAATTCTAC GTGTCGGTTC GTGACACCTG ATCCACTAAT CTCATTCTAT TAATTCATCA 3815 |||||||||| ||||| |||| |||||||| | |||| ||||| |||||||||| ||||||||| CTAATTCTAC GTGTCAGTTC GTGACACCCG ATCCCCTAAT CTCATTCTAT CAATTCATCA 120 AGCCTTCTTT TATACCAAGG CATCATCAAT CTCATCAATC TCATCACTTT AGTTCATCAA 3875 |||||||| ||||||| AGCCTTCTCC CTTACCAAG. .......... .......... .......... .......... 139 GCCTTCTTTT ATACCAAGGC ATCATCAATC TCATTACTTT AGTTCATCGA ACCTTCTTTT 3935 || |||||||||| |||||||||| |||||||| | |||||| .......... ........GC ATCATCAATC TCATTACTTT AGTTCATCAA GCCTTCTCCC 181 ATACCAAGAC ATCATTATTA ACAAG-G-TT -TTTTTTTTC AAGATTTGGG ATTCAATAGC 3992 ||||||| | ||||| |||| | ||| | || ||||| | |||||||||| |||||||| | TTACCAAGGC ATCATCATTA AAAAGAGATT AGGTTTTTAC AAGATTTGGG ATTCAATAAC 241 TTCATCATGC TTATTTCATC ACAATTATAT AATCACATTC ATGCAAGCAT ACAATTAAGC 4052 |||||||||| |||| | || |||||||||| | | |||||| |||||||||| |||||||||| TTCATCATGC TTATATAATA ACAATTATAT AGTTACATTC ATGCAAGCAT ACAATTAAGC 301 ATATAGAAGA CTTTACAATA CAACCCAACA CATATCATTC GCTATCAAGA GTTAACTACG 4112 | |||| || ||||||||| | ||| | |||||||||| |||| |||| ||| |||||| ACATAGCAGG GTTTACAATA TTA-TCAATA CATATCATTC TCTATTAAGA GTTTACTACG 360 AATA--GT-A TA-AAACCAT AACCTACCTC CACCGAAGA 4147 |||| || | | |||| || |||||||||| ||||||||| AATATCGTAA GAGAAACAAT AACCTACCTC CACCGAAGA 399 hqPGS_C09HBa0168F14.1-2+_SGN-E357559- (3696 3834,3894 4147) ******************************************************************************** EST sequence 8 +strand 729 n (File: SGN-E550212+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAACTCG 721 GGGGGGGGC Predicted gene structure (within gDNA segment 3112 to 8682): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 699 716 MATCH C09HBa0168F14.1-2+ SGN-E550212+ 0.873 621 0.852 C PGS_C09HBa0168F14.1-2+_SGN-E550212+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550212+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 9 +strand 710 n (File: SGN-E550065+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATGA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTGATTCAT AAGAAAAAAA Predicted gene structure (within gDNA segment 3112 to 7892): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 MATCH C09HBa0168F14.1-2+ SGN-E550065+ 0.873 621 0.875 C PGS_C09HBa0168F14.1-2+_SGN-E550065+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550065+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 11 +strand 732 n (File: SGN-E550201+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCNA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAAACT 721 CGAGGGGGGG CC Predicted gene structure (within gDNA segment 3112 to 8712): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 699 718 MATCH C09HBa0168F14.1-2+ SGN-E550201+ 0.873 621 0.848 C PGS_C09HBa0168F14.1-2+_SGN-E550201+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550201+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 12 +strand 709 n (File: SGN-E550207+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTNCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 3112 to 7882): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 699 709 MATCH C09HBa0168F14.1-2+ SGN-E550207+ 0.873 621 0.876 C PGS_C09HBa0168F14.1-2+_SGN-E550207+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550207+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 15 +strand 715 n (File: SGN-E550335+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAATCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCNAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 3122 to 7952): Exon 1 4206 4766 ( 561 n); cDNA 2 559 ( 558 n); score: 0.869 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 560 590 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 591 619 ( 29 n); score: 0.621 PPA cDNA 698 715 MATCH C09HBa0168F14.1-2+ SGN-E550335+ 0.869 621 0.869 C PGS_C09HBa0168F14.1-2+_SGN-E550335+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||| | |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCA-A CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | |||| || |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAATC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 473 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 533 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 559 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 559 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 559 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 559 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 559 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 559 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 559 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 582 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 590 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 590 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 590 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 590 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 590 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 590 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 590 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 590 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 590 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 590 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 590 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 590 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 590 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 590 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 590 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 590 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 590 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 590 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 590 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 590 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 590 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 590 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 590 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 619 hqPGS_C09HBa0168F14.1-2+_SGN-E550335+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 31 +strand 717 n (File: SGN-E550484+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 3112 to 7962): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 699 717 MATCH C09HBa0168F14.1-2+ SGN-E550484+ 0.873 621 0.866 C PGS_C09HBa0168F14.1-2+_SGN-E550484+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550484+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 32 +strand 713 n (File: SGN-E550211+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 3122 to 7932): Exon 1 4206 4766 ( 561 n); cDNA 2 559 ( 558 n); score: 0.871 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 560 590 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 591 619 ( 29 n); score: 0.621 PPA cDNA 698 713 MATCH C09HBa0168F14.1-2+ SGN-E550211+ 0.871 621 0.871 C PGS_C09HBa0168F14.1-2+_SGN-E550211+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||| | |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCA-A CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 473 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 533 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 559 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 559 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 559 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 559 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 559 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 559 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 559 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 582 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 590 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 590 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 590 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 590 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 590 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 590 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 590 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 590 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 590 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 590 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 590 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 590 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 590 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 590 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 590 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 590 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 590 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 590 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 590 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 590 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 590 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 590 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 590 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 619 hqPGS_C09HBa0168F14.1-2+_SGN-E550211+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 33 +strand 713 n (File: SGN-E550464+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GNTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCTA CCATGAATTA ATGAAAAATT ATGCCATAAG 661 ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 3112 to 7922): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.871 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 698 713 MATCH C09HBa0168F14.1-2+ SGN-E550464+ 0.871 621 0.871 C PGS_C09HBa0168F14.1-2+_SGN-E550464+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| ||||||| || |||||| AACGACTAAA CAGGTCGNTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550464+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 35 +strand 713 n (File: SGN-E549941+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA TATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCGA CCNATGATTA ATGAAAAATT ATGCCATCAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 3112 to 7922): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.871 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.90), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 699 713 MATCH C09HBa0168F14.1-2+ SGN-E549941+ 0.871 621 0.871 C PGS_C09HBa0168F14.1-2+_SGN-E549941+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||| ||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAATATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E549941+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 36 +strand 714 n (File: SGN-E550025+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 3112 to 7932): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.621 PPA cDNA 699 714 MATCH C09HBa0168F14.1-2+ SGN-E550025+ 0.873 621 0.870 C PGS_C09HBa0168F14.1-2+_SGN-E550025+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | || || .......... .......... .......... TACGATTTAT AACACTATTA GAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E550025+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 59 +strand 711 n (File: SGN-E396039+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AAAAACAAAG ATTTTCTCCA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AAATAAAAAA AATTTACTCA TTTTTTCTTG GAGCTAATTC AAAAAAAAAA A Predicted gene structure (within gDNA segment 3112 to 7902): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 592 620 ( 29 n); score: 0.655 PPA cDNA 661 672 MATCH C09HBa0168F14.1-2+ SGN-E396039+ 0.873 621 0.873 C PGS_C09HBa0168F14.1-2+_SGN-E396039+ (4206 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTTGT AATTATTACT ATTTGATAGA TACCAACTCT ATATCTCTAC CATATATTTA 5280 | | ||| TATTATTT.. .......... .......... .......... .......... .......... 591 CCTAATTAAT TAAGGTATAA TAATTTTTTT TAAGTGATAT AGGTATAAAA TAGACATGAT 5340 .......... .......... .......... .......... .......... .......... 591 ATATTTCATT TTTCGAGAGT CGACAATTAA AATTTACACA TAAAATCTTC AATTTTTTTG 5400 .......... .......... .......... .......... .......... .......... 591 AAATAAAATT TATACATTTG TAAACTACGT AACAAAAAGT ACTACAAGTC ACAATAATTG 5460 .......... .......... .......... .......... .......... .......... 591 ACAATTCAAA ATATTTACAA GATATATGAA AAATTTACAG TCAAAGATAA ACTTGTTAAA 5520 .......... .......... .......... .......... .......... .......... 591 ATCTCAAAAA TTCAAAATGT GTCGCATAAA TTGAAATAGA GAGAATAATT ATTTACGTTA 5580 .......... .......... .......... .......... .......... .......... 591 ATGATATAAT TGGACATAAT TTCGATAAGA AAAATATCCC GAATCTCCAA TGGAAACTTC 5640 .......... .......... .......... .......... .......... .......... 591 TATCGAGATA TTTTTAGTTT TTAGTTGATG GAATGTGATA GAGTTTATGT ACGAACACAT 5700 .......... .......... .......... .......... .......... .......... 591 AAAATTCAAA TTCTGACTAT TTCTTCTTGA TCTATATAGG CTATTTATAA GTTTGATATG 5760 .......... .......... .......... .......... .......... .......... 591 CACTAATTGC TATTATTGAT AAGTCAAAAG TGCATATATA GAGACAACAA TTTAAGGACA 5820 .......... .......... .......... .......... .......... .......... 591 AATAAATTAA ACCACCACAA GCATATAGCC ACTCACTCTT CCAATTTTTT AAAAGTCAAA 5880 .......... .......... .......... .......... .......... .......... 591 AGTTGGCCCT CTTTTGATAA TTTCTCCACA CTACAAAAAG CCAATTTACA TTGCAAAAAT 5940 .......... .......... .......... .......... .......... .......... 591 ATTCAAGAAA TCAACTTCTT TTCTCATTTT CTTGTACACA AAAAATGCTA GGCAAGAAGT 6000 .......... .......... .......... .......... .......... .......... 591 TTGGTTCAAT GAAGAAATTA GCCAAAAAGG CTAAGGTTAT TAGATCACCA AGTGCTAATT 6060 .......... .......... .......... .......... .......... .......... 591 CTATTTATAG CCATGATGAA TCCCAACATC TTGAATATTT ACTTGTTAAG GATGATCATG 6120 .......... .......... .......... .......... .......... .......... 591 ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA AGTGCTAAAT 6180 .......... .......... .......... .......... .......... .......... 591 CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG CGATTCGCGG 6240 .......... .......... .......... .......... .......... .......... 591 TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG ACATATAATG 6300 .......... .......... .......... .......... .......... .......... 591 AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT GCATTTCAAG 6360 .......... .......... .......... .......... .......... .......... 591 AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC TTGGTTGAGG 6420 .......... .......... .......... .......... .......... .......... 591 AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT ACGTACAACG 6480 .......... .......... .......... .......... .......... .......... 591 TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA AAATAGCATT 6540 .......... .......... .......... .......... .......... .......... 591 TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT ACAATTTAAA 6600 .......... .......... .......... .......... .......... .......... 591 GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA ATATCATAG 6659 | | |||| |||| ||| | | || || .......... .......... .......... TACGATTTAT AACACTATTA AAAACAAAG 620 hqPGS_C09HBa0168F14.1-2+_SGN-E396039+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 27 +strand 714 n (File: SGN-E390013+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACNAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATATAAAAA ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 3112 to 7932): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 PPA cDNA 699 714 MATCH C09HBa0168F14.1-2+ SGN-E390013+ 0.873 592 0.829 C PGS_C09HBa0168F14.1-2+_SGN-E390013+ (4206 4766,5198 5228) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTT 5228 | | ||| TATTATTT 591 hqPGS_C09HBa0168F14.1-2+_SGN-E390013+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 62 +strand 711 n (File: SGN-E396056+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAA ATTTTCTCAC CCATGAATTA ATGAAAAAAT TATGCCATAA 661 AATAATAAAA ATTTACTCAT TTTTTCTTTG AGCTAATTCA TAAAAAAAAA A Predicted gene structure (within gDNA segment 3112 to 7902): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 PPA cDNA 700 711 MATCH C09HBa0168F14.1-2+ SGN-E396056+ 0.873 592 0.833 C PGS_C09HBa0168F14.1-2+_SGN-E396056+ (4206 4766,5198 5228) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTT 5228 | | ||| TATTATTT 591 hqPGS_C09HBa0168F14.1-2+_SGN-E396056+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 79 +strand 690 n (File: SGN-E377133+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT ATGCCATAAA 661 ATATAAAAAA TTTACTCATT TTTCATTGAG Predicted gene structure (within gDNA segment 3122 to 7702): Exon 1 4206 4766 ( 561 n); cDNA 1 559 ( 559 n); score: 0.873 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 560 590 ( 31 n); score: 0.710 MATCH C09HBa0168F14.1-2+ SGN-E377133+ 0.873 592 0.858 C PGS_C09HBa0168F14.1-2+_SGN-E377133+ (4206 4766,5198 5228) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 473 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 533 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 559 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 559 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 559 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 559 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 559 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 559 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 559 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 582 AAATGTTT 5228 | | ||| TATTATTT 590 hqPGS_C09HBa0168F14.1-2+_SGN-E377133+ (4206 4766,5198 5228) ******************************************************************************** EST sequence 127 -strand 679 n (File: SGN-E550127-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTCCT TTTCTTTTTC TTATCAAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATTTGCACAA CCATGAATTA ATGAAAAAAT TATGACATAA 661 AATATAAAAA ATTACTCAT Predicted gene structure (within gDNA segment 3102 to 8172): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.867 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 MATCH C09HBa0168F14.1-2+ SGN-E550127- 0.867 592 0.872 C PGS_C09HBa0168F14.1-2+_SGN-E550127- (4206 4766,5198 5228) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || ||| || || ||||| || || ||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTCCT TTTCTTTTTC TT-ATCAAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTAATAA TAAAAATGTG TCCTCCACTC TTCATTCTTT 4800 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA.... .......... .......... .......... 560 TTTTGTTTAT TATATAACTA TCTCTTTATT TTATAATTTT GACTAATTTT TAATCACATA 4860 .......... .......... .......... .......... .......... .......... 560 AACTGATAAA TATTCCAACC GTCTAATTAT TATAATTTAT AATATATACT TTATAAATCC 4920 .......... .......... .......... .......... .......... .......... 560 TTTTAACTTT TTTTAATTTC ATGGGTACCC ACCATTTTCA GCCGTCTAAT ATATTATTAA 4980 .......... .......... .......... .......... .......... .......... 560 AGGGTTGGTG ATTAGTCAAT TTTTTTCTAG TTGATTTAAA GTTAATTAAG TTAAAATTAT 5040 .......... .......... .......... .......... .......... .......... 560 TCTTGATTAT TCAATTATGT AATGGTTAAA ATTATTTTTT TGTTGGTTAT AAAGGAATAT 5100 .......... .......... .......... .......... .......... .......... 560 ATTGGTTGTA ACTAATCCAG TATGCCTTTT TAAGTAATGG ATTAATGGCT AAAATATAGC 5160 .......... .......... .......... .......... .......... .......... 560 ATGAGTTATT GCTATTCTAT TTTTAATAAA GTAATATTTT TTTTCTTTTT TAAATTTTAT 5220 | | | ||| | | ||||| |||| .......... .......... .......... .......TGT TCTTCCTACT TAAATATTAT 583 AAATGTTT 5228 | | ||| TATTATTT 591 hqPGS_C09HBa0168F14.1-2+_SGN-E550127- (4206 4766,5198 5228) ******************************************************************************** EST sequence 131 -strand 673 n (File: SGN-E550140-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTACTCN 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAAAG ATGTTATCAA CCATGAATTA ACAAAAAATT AGACCAAAAA 661 TATAAAAAAT TAC Predicted gene structure (within gDNA segment 3102 to 7512): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.866 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 561 591 ( 31 n); score: 0.710 MATCH C09HBa0168F14.1-2+ SGN-E550140- 0.866 592 0.880 C PGS_C09HBa0168F14.1-2+_SGN-E550140- (4206 4766,5198 5228) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| |||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTA-ATTAC 117 TC-AAGGTTA CCTCTTTTAG CCCCCAAGTA ATT-GAGTTA TTAATATTAA ACCACTAACT 4383 || ||||||| ||||||||| |||||| ||| ||| || ||| |||| || || ||||||||| TCNAAGGTTA CCTCTTTTAA CCCCCAGGTA ATTAGACTTA TTAACATAAA CCCACTAACT 177 TTATAATTAT AAGTCGGAAT AGTCAAAAAC GTCCCTTAAA ATAT-TAAAG AAATCCGACT 4442 ||||||||| |||| ||||| |||| ||||| |||||||||| | | ||||| ||||||||| TTATAATTA- AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA ACGTGTAAAG AAATCCGACC 236 CCGCCTGGGA TTACGCAGCC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCTGC 4502 | | |||||| ||||||| || ||||| || | |||||||||| |||||||||| ||||||| | CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG 296 TCCGTCACAG AGTTCAGAGA CTCAA-TT-C TCTGAAGAGT CTGTGACAGT CCGTCACGCC 4560 | |||| || ||||||||| ||||| || | | |||||| ||||||| || |||||||||| T-CGTCGCAA GGTTCAGAGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC 355 TGTGACGGTC CATCCTGCCA TTCCGTTACG AAGTTCAGAG AGTCGA-TTT CAGTACCCAT 4619 ||||||||| | || ||||| |||||||||| |||||||||| |||||| ||| |||||||| CGTGACGGTC CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCA- 414 TTTTCAGAAT TTCTAAGTGT TTTGAAACGA GACACTCTCG ACGGTCCGTC GTGCCCATGA 4679 ||||||||| |||||||||| |||||||||| ||| | |||| ||||||| || |||| ||||| ATTTCAGAAT TTCTAAGTGT TTTGAAACGA GACTC-CTCG ACGGTCCATC GTGCTCATGA 473 CGGTCCGTCG TGGGTTCCGT CATCTCAGCC TGTTTTTCTA TAAATAAAAT CTGCTGCTCA 4739 |||||||||| |||||||||| | ||||| || |||||||| | ||||||||| ||||| |||| CGGTCCGTCG TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA 533 AAATGACTAA ACAGGTCGTT ACATTTAATA ATAAAAATGT GTCCTCCACT CTTCATTCTT 4799 ||| |||||| |||||||||| ||||||| AAACGACTAA ACAGGTCGTT ACATTTA... .......... .......... .......... 560 TTTTTGTTTA TTATATAACT ATCTCTTTAT TTTATAATTT TGACTAATTT TTAATCACAT 4859 .......... .......... .......... .......... .......... .......... 560 AAACTGATAA ATATTCCAAC CGTCTAATTA TTATAATTTA TAATATATAC TTTATAAATC 4919 .......... .......... .......... .......... .......... .......... 560 CTTTTAACTT TTTTTAATTT CATGGGTACC CACCATTTTC AGCCGTCTAA TATATTATTA 4979 .......... .......... .......... .......... .......... .......... 560 AAGGGTTGGT GATTAGTCAA TTTTTTTCTA GTTGATTTAA AGTTAATTAA GTTAAAATTA 5039 .......... .......... .......... .......... .......... .......... 560 TTCTTGATTA TTCAATTATG TAATGGTTAA AATTATTTTT TTGTTGGTTA TAAAGGAATA 5099 .......... .......... .......... .......... .......... .......... 560 TATTGGTTGT AACTAATCCA GTATGCCTTT TTAAGTAATG GATTAATGGC TAAAATATAG 5159 .......... .......... .......... .......... .......... .......... 560 CATGAGTTAT TGCTATTCTA TTTTTAATAA AGTAATATTT TTTTTCTTTT TTAAATTTTA 5219 | || ||| | |||||| ||| .......... .......... .......... ........TG TTCTTCCTAC TTAAATATTA 582 TAAATGTTT 5228 | | | ||| TTATTATTT 591 hqPGS_C09HBa0168F14.1-2+_SGN-E550140- (4206 4766,5198 5228) ******************************************************************************** EST sequence 10 +strand 726 n (File: SGN-E550322+) 1 TCGCACCAGA TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC 61 CTCCTTCTTT TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT 121 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 181 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 241 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 301 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 361 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 421 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 481 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 541 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 601 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 661 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAAAA 721 AAAAAC Predicted gene structure (within gDNA segment 3022 to 7962): Exon 1 4218 4766 ( 549 n); cDNA 22 569 ( 548 n); score: 0.879 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 570 600 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 601 629 ( 29 n); score: 0.621 PPA cDNA 708 725 MATCH C09HBa0168F14.1-2+ SGN-E550322+ 0.879 609 0.839 C PGS_C09HBa0168F14.1-2+_SGN-E550322+ (4218 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCTCTCTCTT CTTGTTCTTT CTATTTTCTT TATTCAAATC CTCTTTCTTT TACCCTAATT 4277 |||||||||| |||||||| | |||| | |||||||| | ||| |||||| |||||||||| TCTCTCTCTT TCTGTTCTTT -TCTTTTTCT TATTCAAACC CTCCTTCTTT TACCCTAATT 80 AGCATATAAT TAAGAATAAA AGATGGCAAT AATAACTCAC TAGTTTACTC AAGGTTACCT 4337 |||||||||| |||||||||| |||||| ||| |||||| ||| || ||||||| |||||||||| AGCATATAAT TAAGAATAAA AGATGG-AAT AATAACCCAC TAATTTACTC AAGGTTACCT 139 CTTTTAGCCC CCAAGTAATT -GAGTTATTA ATATTAAACC ACTAACTTTA TAATTATAAG 4396 |||||| ||| ||| |||||| || |||||| | || || || |||||||||| |||||| ||| CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTA-AAG 198 TCGGAATAGT CAAAAACGTC CCTTAAAATA T-TAAAGAAA TCCGACTCCG CCTGGGATTA 4455 | |||||||| | |||||||| |||||||| | |||||||| |||||| | | ||||||||| TAGGAATAGT CCAAAACGTC CCTTAAAACG TGTAAAGAAA TCCGACCCAG ACTGGGATTA 258 CGCAGCCTGT GACGGGCCGT CGTGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT 4515 |||| ||||| || || |||| |||||||||| |||||||||| |||| | | | ||| || || CGCAACCTGT GATGGCCCGT CGTGCCTGCG ACGGTCCGTC CTGCAGGT-C GTCGCAAGGT 317 TCAGAGACTC AA-TT-CTCT GAAGAGTCTG TGACAGTCCG TCACGCCTGT GACGGTCCAT 4573 |||||||||| || || | | ||||||||| |||| ||||| ||||||| || |||||||| | TCAGAGACTC AATTTCCACC AAAGAGTCTG TGACGGTCCG TCACGCCCGT GACGGTCCGT 377 CCTGCCATTC CGTTACGAAG TTCAGAGAGT CGA-TTTCAG TACCCATTTT TCAGAATTTC 4632 | |||||||| |||||||||| |||||||||| ||| ||| || |||||| || |||||||||| CGTGCCATTC CGTTACGAAG TTCAGAGAGT CGATTTTTAG TACCCA-ATT TCAGAATTTC 436 TAAGTGTTTT GAAACGAGAC ACTCTCGACG GTCCGTCGTG CCCATGACGG TCCGTCGTGG 4692 |||||||||| |||||||||| | ||||||| |||| ||||| | |||||||| |||||||||| TAAGTGTTTT GAAACGAGAC TC-CTCGACG GTCCATCGTG CTCATGACGG TCCGTCGTGG 495 GTTCCGTCAT CTCAGCCTGT TTTTCTATAA ATAAAATCTG CTGCTCAAAA TGACTAAACA 4752 |||||||| | |||| ||||| ||||| | || |||||||||| || ||||||| ||||||||| GTTCCGTCGT CTCAACCTGT TTTTCCAAAA ATAAAATCTG CTACTCAAAA CGACTAAACA 555 GGTCGTTACA TTTAATAATA AAAATGTGTC CTCCACTCTT CATTCTTTTT TTGTTTATTA 4812 |||||||||| |||| GGTCGTTACA TTTA...... .......... .......... .......... .......... 569 TATAACTATC TCTTTATTTT ATAATTTTGA CTAATTTTTA ATCACATAAA CTGATAAATA 4872 .......... .......... .......... .......... .......... .......... 569 TTCCAACCGT CTAATTATTA TAATTTATAA TATATACTTT ATAAATCCTT TTAACTTTTT 4932 .......... .......... .......... .......... .......... .......... 569 TTAATTTCAT GGGTACCCAC CATTTTCAGC CGTCTAATAT ATTATTAAAG GGTTGGTGAT 4992 .......... .......... .......... .......... .......... .......... 569 TAGTCAATTT TTTTCTAGTT GATTTAAAGT TAATTAAGTT AAAATTATTC TTGATTATTC 5052 .......... .......... .......... .......... .......... .......... 569 AATTATGTAA TGGTTAAAAT TATTTTTTTG TTGGTTATAA AGGAATATAT TGGTTGTAAC 5112 .......... .......... .......... .......... .......... .......... 569 TAATCCAGTA TGCCTTTTTA AGTAATGGAT TAATGGCTAA AATATAGCAT GAGTTATTGC 5172 .......... .......... .......... .......... .......... .......... 569 TATTCTATTT TTAATAAAGT AATATTTTTT TTCTTTTTTA AATTTTATAA ATGTTTGTAA 5232 | || ||| | ||| ||| |||| | | ||| .......... .......... .....TGTTC TTCCTACTTA AATATTATTA TTATTT.... 600 TTATTACTAT TTGATAGATA CCAACTCTAT ATCTCTACCA TATATTTACC TAATTAATTA 5292 .......... .......... .......... .......... .......... .......... 600 AGGTATAATA ATTTTTTTTA AGTGATATAG GTATAAAATA GACATGATAT ATTTCATTTT 5352 .......... .......... .......... .......... .......... .......... 600 TCGAGAGTCG ACAATTAAAA TTTACACATA AAATCTTCAA TTTTTTTGAA ATAAAATTTA 5412 .......... .......... .......... .......... .......... .......... 600 TACATTTGTA AACTACGTAA CAAAAAGTAC TACAAGTCAC AATAATTGAC AATTCAAAAT 5472 .......... .......... .......... .......... .......... .......... 600 ATTTACAAGA TATATGAAAA ATTTACAGTC AAAGATAAAC TTGTTAAAAT CTCAAAAATT 5532 .......... .......... .......... .......... .......... .......... 600 CAAAATGTGT CGCATAAATT GAAATAGAGA GAATAATTAT TTACGTTAAT GATATAATTG 5592 .......... .......... .......... .......... .......... .......... 600 GACATAATTT CGATAAGAAA AATATCCCGA ATCTCCAATG GAAACTTCTA TCGAGATATT 5652 .......... .......... .......... .......... .......... .......... 600 TTTAGTTTTT AGTTGATGGA ATGTGATAGA GTTTATGTAC GAACACATAA AATTCAAATT 5712 .......... .......... .......... .......... .......... .......... 600 CTGACTATTT CTTCTTGATC TATATAGGCT ATTTATAAGT TTGATATGCA CTAATTGCTA 5772 .......... .......... .......... .......... .......... .......... 600 TTATTGATAA GTCAAAAGTG CATATATAGA GACAACAATT TAAGGACAAA TAAATTAAAC 5832 .......... .......... .......... .......... .......... .......... 600 CACCACAAGC ATATAGCCAC TCACTCTTCC AATTTTTTAA AAGTCAAAAG TTGGCCCTCT 5892 .......... .......... .......... .......... .......... .......... 600 TTTGATAATT TCTCCACACT ACAAAAAGCC AATTTACATT GCAAAAATAT TCAAGAAATC 5952 .......... .......... .......... .......... .......... .......... 600 AACTTCTTTT CTCATTTTCT TGTACACAAA AAATGCTAGG CAAGAAGTTT GGTTCAATGA 6012 .......... .......... .......... .......... .......... .......... 600 AGAAATTAGC CAAAAAGGCT AAGGTTATTA GATCACCAAG TGCTAATTCT ATTTATAGCC 6072 .......... .......... .......... .......... .......... .......... 600 ATGATGAATC CCAACATCTT GAATATTTAC TTGTTAAGGA TGATCATGAT CATGATCATG 6132 .......... .......... .......... .......... .......... .......... 600 ATGATCAAGA TCAAGATTAT CAAGGGGTTA GTCCAACAAG TGCTAAATCA TCAAAAAAGA 6192 .......... .......... .......... .......... .......... .......... 600 TGGGAACATT TGCAGTGTAT GTAGGGGAAG AAAGGGAGCG ATTCGCGGTG CCAACGAGCT 6252 .......... .......... .......... .......... .......... .......... 600 ATCTTTCACA TCCATTGTTC AAGATTTTGT TGGAGAAGAC ATATAATGAG TTTGGTTTTG 6312 .......... .......... .......... .......... .......... .......... 600 AGCAAACAAA TGGACTTGTG GTTCCATGTA GTGTTGCTGC ATTTCAAGAA GTGGTCAATG 6372 .......... .......... .......... .......... .......... .......... 600 CTGTGGAGTG TTGCAATGGG AAGTTTGATT TTGGTGGCTT GGTTGAGGAA TTTCTATAAT 6432 .......... .......... .......... .......... .......... .......... 600 TAGGTCTATA TTATTCAAGG TCTTATATAT TCACAACTAC GTACAACGTT TCAGTCTCGA 6492 .......... .......... .......... .......... .......... .......... 600 ACAAGTTGGA ATCAATTACT TTTCTAACTA GAGTGAAAAA ATAGCATTTG GTGAAATAGA 6552 .......... .......... .......... .......... .......... .......... 600 TTTTAAAAGG ATTAAATCAT ATATTAAGGA GGTAATTTAC AATTTAAAGT CTTAGTTACT 6612 .......... .......... .......... .......... .......... .......... 600 TTTGTACCAA AGAGATAGTG TAAATTATTA CACCTTTAAT ATCATAG 6659 | | |||| | ||| ||| | || || .......... ........TA CGATTTATAA CACTATTAGA AACAAAG 629 hqPGS_C09HBa0168F14.1-2+_SGN-E550322+ (4218 4766,5198 5228) ******************************************************************************** EST sequence 198 -strand 674 n (File: SGN-E396057-) 1 TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 61 GAATAATAAC CCACTAATTT ACTCAAGGTT ACCTCTTTTA ACCCCCAGGT AATTAGACTT 121 ATTAACATAA ACCCACTAAC TTTATAATTA AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA 181 ACGTGTAAAG AAATCCGACC CAGACTGGGA TTACGCAACC TGTGATGGCC CGTCGTGCCT 241 GCGACGGTCC GTCCTGCAGG TCGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC 301 TGTGACGGTC CGTCACGCCC GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA 361 GTCGATTTTT AGTACCCAAT TTCAGAATTT TTAAGTGTTT TGAAACGAGA CTCCTCGACG 421 GTCCATCGTG CTCATGACGG TCCGTCGTGG GTTCCGTCGT CTCAACCTGT TTTTCCAAAA 481 ATAAAATCTG CTACTCAAAA CGACTAAACA GGTCGTTACA TTTATGTTCT TCCTACTTAA 541 ATATTATTAT TATTTTACGA TTTATAACAC TATTAGAAAC AAAGATTTTC TCAACCATGA 601 ATTAATGAAA AAATTATGCC ATAAAATATA AAAAATTTAC TCATTTTTCA TTGAGCTAAT 661 TCATAAAAAA AAAA Predicted gene structure (within gDNA segment 3435 to 8269): Exon 1 4243 4766 ( 524 n); cDNA 1 524 ( 524 n); score: 0.879 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 525 555 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 556 584 ( 29 n); score: 0.621 PPA cDNA 663 674 MATCH C09HBa0168F14.1-2+ SGN-E396057- 0.879 584 0.866 C PGS_C09HBa0168F14.1-2+_SGN-E396057- (4243 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TTCTTTATTC AAATCCTCTT TCTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 4302 || ||||||| ||| | |||| | |||||||| |||||||||| |||||||||| |||||||||| TTTTTTATTC AAACCTTCTT TTTTTTACCC TAATTAGCAT ATAATTAAGA ATAAAAGATG 60 GCAATAATAA CTCACTAGTT TACTCAAGGT TACCTCTTTT AGCCCCCAAG TAATT-GAGT 4361 | |||||||| | ||||| || |||||||||| |||||||||| | |||||| | ||||| || | G-AATAATAA CCCACTAATT TACTCAAGGT TACCTCTTTT AACCCCCAGG TAATTAGACT 119 TATTAATATT AAACCACTAA CTTTATAATT ATAAGTCGGA ATAGTCAAAA ACGTCCCTTA 4421 |||||| || || ||||||| |||||||||| | |||| ||| |||||| ||| |||||||||| TATTAACATA AACCCACTAA CTTTATAATT A-AAGTAGGA ATAGTCCAAA ACGTCCCTTA 178 AAATAT-TAA AGAAATCCGA CTCCGCCTGG GATTACGCAG CCTGTGACGG GCCGTCGTGC 4480 ||| | ||| |||||||||| | | | |||| ||||||||| ||||||| || ||||||||| AAACGTGTAA AGAAATCCGA CCCAGACTGG GATTACGCAA CCTGTGATGG CCCGTCGTGC 238 CTGCGACGGT CCGTCCTGCT GCTCCGTCAC AGAGTTCAGA GACTCAA-TT -CTCTGAAGA 4538 |||||||||| ||||||||| | | |||| | | ||||||| ||||||| || | | |||| CTGCGACGGT CCGTCCTGCA GGT-CGTCGC AAGGTTCAGA GACTCAATTT CCACCAAAGA 297 GTCTGTGACA GTCCGTCACG CCTGTGACGG TCCATCCTGC CATTCCGTTA CGAAGTTCAG 4598 ||||||||| |||||||||| || ||||||| ||| || ||| |||||||||| |||||||||| GTCTGTGACG GTCCGTCACG CCCGTGACGG TCCGTCGTGC CATTCCGTTA CGAAGTTCAG 357 AGAGTCGA-T TTCAGTACCC ATTTTTCAGA ATTTCTAAGT GTTTTGAAAC GAGACACTCT 4657 |||||||| | || ||||||| | ||||||| |||| ||||| |||||||||| ||||| | || AGAGTCGATT TTTAGTACCC A-ATTTCAGA ATTTTTAAGT GTTTTGAAAC GAGACTC-CT 415 CGACGGTCCG TCGTGCCCAT GACGGTCCGT CGTGGGTTCC GTCATCTCAG CCTGTTTTTC 4717 ||||||||| |||||| ||| |||||||||| |||||||||| ||| ||||| |||||||||| CGACGGTCCA TCGTGCTCAT GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC 475 TATAAATAAA ATCTGCTGCT CAAAATGACT AAACAGGTCG TTACATTTAA TAATAAAAAT 4777 | ||||||| ||||||| || ||||| |||| |||||||||| ||||||||| CAAAAATAAA ATCTGCTACT CAAAACGACT AAACAGGTCG TTACATTTA. .......... 524 GTGTCCTCCA CTCTTCATTC TTTTTTTGTT TATTATATAA CTATCTCTTT ATTTTATAAT 4837 .......... .......... .......... .......... .......... .......... 524 TTTGACTAAT TTTTAATCAC ATAAACTGAT AAATATTCCA ACCGTCTAAT TATTATAATT 4897 .......... .......... .......... .......... .......... .......... 524 TATAATATAT ACTTTATAAA TCCTTTTAAC TTTTTTTAAT TTCATGGGTA CCCACCATTT 4957 .......... .......... .......... .......... .......... .......... 524 TCAGCCGTCT AATATATTAT TAAAGGGTTG GTGATTAGTC AATTTTTTTC TAGTTGATTT 5017 .......... .......... .......... .......... .......... .......... 524 AAAGTTAATT AAGTTAAAAT TATTCTTGAT TATTCAATTA TGTAATGGTT AAAATTATTT 5077 .......... .......... .......... .......... .......... .......... 524 TTTTGTTGGT TATAAAGGAA TATATTGGTT GTAACTAATC CAGTATGCCT TTTTAAGTAA 5137 .......... .......... .......... .......... .......... .......... 524 TGGATTAATG GCTAAAATAT AGCATGAGTT ATTGCTATTC TATTTTTAAT AAAGTAATAT 5197 .......... .......... .......... .......... .......... .......... 524 TTTTTTTCTT TTTTAAATTT TATAAATGTT TGTAATTATT ACTATTTGAT AGATACCAAC 5257 | || ||| | |||||| | ||| | | || | TGTTCTTCCT ACTTAAATAT TATTATTATT T......... .......... .......... 555 TCTATATCTC TACCATATAT TTACCTAATT AATTAAGGTA TAATAATTTT TTTTAAGTGA 5317 .......... .......... .......... .......... .......... .......... 555 TATAGGTATA AAATAGACAT GATATATTTC ATTTTTCGAG AGTCGACAAT TAAAATTTAC 5377 .......... .......... .......... .......... .......... .......... 555 ACATAAAATC TTCAATTTTT TTGAAATAAA ATTTATACAT TTGTAAACTA CGTAACAAAA 5437 .......... .......... .......... .......... .......... .......... 555 AGTACTACAA GTCACAATAA TTGACAATTC AAAATATTTA CAAGATATAT GAAAAATTTA 5497 .......... .......... .......... .......... .......... .......... 555 CAGTCAAAGA TAAACTTGTT AAAATCTCAA AAATTCAAAA TGTGTCGCAT AAATTGAAAT 5557 .......... .......... .......... .......... .......... .......... 555 AGAGAGAATA ATTATTTACG TTAATGATAT AATTGGACAT AATTTCGATA AGAAAAATAT 5617 .......... .......... .......... .......... .......... .......... 555 CCCGAATCTC CAATGGAAAC TTCTATCGAG ATATTTTTAG TTTTTAGTTG ATGGAATGTG 5677 .......... .......... .......... .......... .......... .......... 555 ATAGAGTTTA TGTACGAACA CATAAAATTC AAATTCTGAC TATTTCTTCT TGATCTATAT 5737 .......... .......... .......... .......... .......... .......... 555 AGGCTATTTA TAAGTTTGAT ATGCACTAAT TGCTATTATT GATAAGTCAA AAGTGCATAT 5797 .......... .......... .......... .......... .......... .......... 555 ATAGAGACAA CAATTTAAGG ACAAATAAAT TAAACCACCA CAAGCATATA GCCACTCACT 5857 .......... .......... .......... .......... .......... .......... 555 CTTCCAATTT TTTAAAAGTC AAAAGTTGGC CCTCTTTTGA TAATTTCTCC ACACTACAAA 5917 .......... .......... .......... .......... .......... .......... 555 AAGCCAATTT ACATTGCAAA AATATTCAAG AAATCAACTT CTTTTCTCAT TTTCTTGTAC 5977 .......... .......... .......... .......... .......... .......... 555 ACAAAAAATG CTAGGCAAGA AGTTTGGTTC AATGAAGAAA TTAGCCAAAA AGGCTAAGGT 6037 .......... .......... .......... .......... .......... .......... 555 TATTAGATCA CCAAGTGCTA ATTCTATTTA TAGCCATGAT GAATCCCAAC ATCTTGAATA 6097 .......... .......... .......... .......... .......... .......... 555 TTTACTTGTT AAGGATGATC ATGATCATGA TCATGATGAT CAAGATCAAG ATTATCAAGG 6157 .......... .......... .......... .......... .......... .......... 555 GGTTAGTCCA ACAAGTGCTA AATCATCAAA AAAGATGGGA ACATTTGCAG TGTATGTAGG 6217 .......... .......... .......... .......... .......... .......... 555 GGAAGAAAGG GAGCGATTCG CGGTGCCAAC GAGCTATCTT TCACATCCAT TGTTCAAGAT 6277 .......... .......... .......... .......... .......... .......... 555 TTTGTTGGAG AAGACATATA ATGAGTTTGG TTTTGAGCAA ACAAATGGAC TTGTGGTTCC 6337 .......... .......... .......... .......... .......... .......... 555 ATGTAGTGTT GCTGCATTTC AAGAAGTGGT CAATGCTGTG GAGTGTTGCA ATGGGAAGTT 6397 .......... .......... .......... .......... .......... .......... 555 TGATTTTGGT GGCTTGGTTG AGGAATTTCT ATAATTAGGT CTATATTATT CAAGGTCTTA 6457 .......... .......... .......... .......... .......... .......... 555 TATATTCACA ACTACGTACA ACGTTTCAGT CTCGAACAAG TTGGAATCAA TTACTTTTCT 6517 .......... .......... .......... .......... .......... .......... 555 AACTAGAGTG AAAAAATAGC ATTTGGTGAA ATAGATTTTA AAAGGATTAA ATCATATATT 6577 .......... .......... .......... .......... .......... .......... 555 AAGGAGGTAA TTTACAATTT AAAGTCTTAG TTACTTTTGT ACCAAAGAGA TAGTGTAAAT 6637 | | | .......... .......... .......... .......... .......... ...TACGATT 562 TATTACACCT TTAATATCAT AG 6659 ||| |||| ||| | || || TATAACACTA TTAGAAACAA AG 584 hqPGS_C09HBa0168F14.1-2+_SGN-E396057- (4243 4766,5198 5228) ******************************************************************************** EST sequence 212 -strand 658 n (File: SGN-E377132-) 1 TTCCTTCTTT TACCCTAATT AGCATATATT TAAGAATAAA AGATGGAATA ATAACCCACT 61 AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 121 CTAACTTTAT AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC 181 CGACCCAGAC TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT 241 GCAGGTCGTC GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA 301 CGCCCGTGAC GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC 361 CCAATTTCAG AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT 421 GACGGTCCGT CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT 481 CAAAACGACT AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT 541 TACGATTTAT AACACTATTA GAAACAAAGA TTTTCTCAAC CATGAATTAA TGAAAAAATT 601 ATGCCATAAA ATATAAAAAA TTTACTCATT TTTCATTGAG CTAATTCATA AAAAAAAA Predicted gene structure (within gDNA segment 3612 to 7872): Exon 1 4259 4766 ( 508 n); cDNA 2 509 ( 508 n); score: 0.881 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 510 540 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 541 569 ( 29 n); score: 0.621 PPA cDNA 648 658 MATCH C09HBa0168F14.1-2+ SGN-E377132- 0.881 568 0.863 C PGS_C09HBa0168F14.1-2+_SGN-E377132- (4259 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TCTTTCTTTT ACCCTAATTA GCATATAATT AAGAATAAAA GATGGCAATA ATAACTCACT 4318 || ||||||| |||||||||| ||||||| || |||||||||| ||||| |||| ||||| |||| TCCTTCTTTT ACCCTAATTA GCATATATTT AAGAATAAAA GATGG-AATA ATAACCCACT 60 AGTTTACTCA AGGTTACCTC TTTTAGCCCC CAAGTAATT- GAGTTATTAA TATTAAACCA 4377 | |||||||| |||||||||| ||||| |||| || |||||| || ||||||| || || ||| AATTTACTCA AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA 120 CTAACTTTAT AATTATAAGT CGGAATAGTC AAAAACGTCC CTTAAAATAT -TAAAGAAAT 4436 |||||||||| ||||| |||| ||||||||| ||||||||| ||||||| | ||||||||| CTAACTTTAT AATTA-AAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT 179 CCGACTCCGC CTGGGATTAC GCAGCCTGTG ACGGGCCGTC GTGCCTGCGA CGGTCCGTCC 4496 ||||| | | |||||||||| ||| |||||| | || ||||| |||||||||| |||||||||| CCGACCCAGA CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC 239 TGCTGCTCCG TCACAGAGTT CAGAGACTCA A-TT-CTCTG AAGAGTCTGT GACAGTCCGT 4554 ||| | | || || || ||| |||||||||| | || | | |||||||||| ||| |||||| TGCAGGT-CG TCGCAAGGTT CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT 298 CACGCCTGTG ACGGTCCATC CTGCCATTCC GTTACGAAGT TCAGAGAGTC GA-TTTCAGT 4613 |||||| ||| ||||||| || ||||||||| |||||||||| |||||||||| || ||| ||| CACGCCCGTG ACGGTCCGTC GTGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT 358 ACCCATTTTT CAGAATTTCT AAGTGTTTTG AAACGAGACA CTCTCGACGG TCCGTCGTGC 4673 ||||| ||| |||||||||| |||||||||| ||||||||| | |||||||| ||| |||||| ACCCA-ATTT CAGAATTTCT AAGTGTTTTG AAACGAGACT C-CTCGACGG TCCATCGTGC 416 CCATGACGGT CCGTCGTGGG TTCCGTCATC TCAGCCTGTT TTTCTATAAA TAAAATCTGC 4733 ||||||||| |||||||||| ||||||| || ||| |||||| |||| | ||| |||||||||| TCATGACGGT CCGTCGTGGG TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC 476 TGCTCAAAAT GACTAAACAG GTCGTTACAT TTAATAATAA AAATGTGTCC TCCACTCTTC 4793 | ||||||| |||||||||| |||||||||| ||| TACTCAAAAC GACTAAACAG GTCGTTACAT TTA....... .......... .......... 509 ATTCTTTTTT TGTTTATTAT ATAACTATCT CTTTATTTTA TAATTTTGAC TAATTTTTAA 4853 .......... .......... .......... .......... .......... .......... 509 TCACATAAAC TGATAAATAT TCCAACCGTC TAATTATTAT AATTTATAAT ATATACTTTA 4913 .......... .......... .......... .......... .......... .......... 509 TAAATCCTTT TAACTTTTTT TAATTTCATG GGTACCCACC ATTTTCAGCC GTCTAATATA 4973 .......... .......... .......... .......... .......... .......... 509 TTATTAAAGG GTTGGTGATT AGTCAATTTT TTTCTAGTTG ATTTAAAGTT AATTAAGTTA 5033 .......... .......... .......... .......... .......... .......... 509 AAATTATTCT TGATTATTCA ATTATGTAAT GGTTAAAATT ATTTTTTTGT TGGTTATAAA 5093 .......... .......... .......... .......... .......... .......... 509 GGAATATATT GGTTGTAACT AATCCAGTAT GCCTTTTTAA GTAATGGATT AATGGCTAAA 5153 .......... .......... .......... .......... .......... .......... 509 ATATAGCATG AGTTATTGCT ATTCTATTTT TAATAAAGTA ATATTTTTTT TCTTTTTTAA 5213 | || | || | |||| .......... .......... .......... .......... ....TGTTCT TCCTACTTAA 525 ATTTTATAAA TGTTTGTAAT TATTACTATT TGATAGATAC CAACTCTATA TCTCTACCAT 5273 || |||| | | ||| ATATTATTAT TATTT..... .......... .......... .......... .......... 540 ATATTTACCT AATTAATTAA GGTATAATAA TTTTTTTTAA GTGATATAGG TATAAAATAG 5333 .......... .......... .......... .......... .......... .......... 540 ACATGATATA TTTCATTTTT CGAGAGTCGA CAATTAAAAT TTACACATAA AATCTTCAAT 5393 .......... .......... .......... .......... .......... .......... 540 TTTTTTGAAA TAAAATTTAT ACATTTGTAA ACTACGTAAC AAAAAGTACT ACAAGTCACA 5453 .......... .......... .......... .......... .......... .......... 540 ATAATTGACA ATTCAAAATA TTTACAAGAT ATATGAAAAA TTTACAGTCA AAGATAAACT 5513 .......... .......... .......... .......... .......... .......... 540 TGTTAAAATC TCAAAAATTC AAAATGTGTC GCATAAATTG AAATAGAGAG AATAATTATT 5573 .......... .......... .......... .......... .......... .......... 540 TACGTTAATG ATATAATTGG ACATAATTTC GATAAGAAAA ATATCCCGAA TCTCCAATGG 5633 .......... .......... .......... .......... .......... .......... 540 AAACTTCTAT CGAGATATTT TTAGTTTTTA GTTGATGGAA TGTGATAGAG TTTATGTACG 5693 .......... .......... .......... .......... .......... .......... 540 AACACATAAA ATTCAAATTC TGACTATTTC TTCTTGATCT ATATAGGCTA TTTATAAGTT 5753 .......... .......... .......... .......... .......... .......... 540 TGATATGCAC TAATTGCTAT TATTGATAAG TCAAAAGTGC ATATATAGAG ACAACAATTT 5813 .......... .......... .......... .......... .......... .......... 540 AAGGACAAAT AAATTAAACC ACCACAAGCA TATAGCCACT CACTCTTCCA ATTTTTTAAA 5873 .......... .......... .......... .......... .......... .......... 540 AGTCAAAAGT TGGCCCTCTT TTGATAATTT CTCCACACTA CAAAAAGCCA ATTTACATTG 5933 .......... .......... .......... .......... .......... .......... 540 CAAAAATATT CAAGAAATCA ACTTCTTTTC TCATTTTCTT GTACACAAAA AATGCTAGGC 5993 .......... .......... .......... .......... .......... .......... 540 AAGAAGTTTG GTTCAATGAA GAAATTAGCC AAAAAGGCTA AGGTTATTAG ATCACCAAGT 6053 .......... .......... .......... .......... .......... .......... 540 GCTAATTCTA TTTATAGCCA TGATGAATCC CAACATCTTG AATATTTACT TGTTAAGGAT 6113 .......... .......... .......... .......... .......... .......... 540 GATCATGATC ATGATCATGA TGATCAAGAT CAAGATTATC AAGGGGTTAG TCCAACAAGT 6173 .......... .......... .......... .......... .......... .......... 540 GCTAAATCAT CAAAAAAGAT GGGAACATTT GCAGTGTATG TAGGGGAAGA AAGGGAGCGA 6233 .......... .......... .......... .......... .......... .......... 540 TTCGCGGTGC CAACGAGCTA TCTTTCACAT CCATTGTTCA AGATTTTGTT GGAGAAGACA 6293 .......... .......... .......... .......... .......... .......... 540 TATAATGAGT TTGGTTTTGA GCAAACAAAT GGACTTGTGG TTCCATGTAG TGTTGCTGCA 6353 .......... .......... .......... .......... .......... .......... 540 TTTCAAGAAG TGGTCAATGC TGTGGAGTGT TGCAATGGGA AGTTTGATTT TGGTGGCTTG 6413 .......... .......... .......... .......... .......... .......... 540 GTTGAGGAAT TTCTATAATT AGGTCTATAT TATTCAAGGT CTTATATATT CACAACTACG 6473 .......... .......... .......... .......... .......... .......... 540 TACAACGTTT CAGTCTCGAA CAAGTTGGAA TCAATTACTT TTCTAACTAG AGTGAAAAAA 6533 .......... .......... .......... .......... .......... .......... 540 TAGCATTTGG TGAAATAGAT TTTAAAAGGA TTAAATCATA TATTAAGGAG GTAATTTACA 6593 .......... .......... .......... .......... .......... .......... 540 ATTTAAAGTC TTAGTTACTT TTGTACCAAA GAGATAGTGT AAATTATTAC ACCTTTAATA 6653 | | |||| || || ||| | .......... .......... .......... .......TAC GATTTATAAC ACTATTAGAA 563 TCATAG 6659 || || ACAAAG 569 hqPGS_C09HBa0168F14.1-2+_SGN-E377132- (4259 4766,5198 5228) ******************************************************************************** EST sequence 197 -strand 647 n (File: SGN-E396055-) 1 ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 61 TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 121 TTAAAGTAGG AATAGTCCAA AACGTCCCTT AAAACGTGTA AAGAAATCCG ACCCAGACTG 181 GGATTACGCA ACCTGTGATG GCCCGTCGTG CCTGCGACGG TCCGTCCTGC AGGTCGTCGC 241 AAGGTTCAGA GACTCAATTT CCACCAAAGA GTCTGTGACG GTCCGTCACG CCCGTGACGG 301 TCCGTCGTGC CATTCCGTTA CGAAGTTCAG AGAGTCGATT TTTAGTACCC AATTTCAGAA 361 TTTCTAAGTG TTTTGAAACG AGACTCCTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 421 TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 481 ACAGGTCGTT ACATTTATGT TCTTCCTACT TAAATATTAT TATTATTTTA CGATTTATAA 541 CACTATTAGA AACAAAGATT TTCTCAACCA TGAATTAATG AAAAAATTAT GCCATAAAAT 601 ATAAAAAATT TACTCATTTT TCATTGAGCT AATTCATAAA AAAAAAA Predicted gene structure (within gDNA segment 2715 to 7882): Exon 1 4275 4766 ( 492 n); cDNA 1 497 ( 497 n); score: 0.855 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 498 528 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 529 557 ( 29 n); score: 0.621 PPA cDNA 636 647 MATCH C09HBa0168F14.1-2+ SGN-E396055- 0.855 552 0.853 C PGS_C09HBa0168F14.1-2+_SGN-E396055- (4275 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): ATTAGCATAT AATTAAGAAT -AAAAGATGG CAATAATAAC TCACTAGTTT ACTCAA-GGT 4332 |||||||||| |||||||||| ||||||||| ||||||||| ||||| ||| |||||| ||| ATTAGCATAT AATTAAGAAT AAAAAGATGG AAATAATAAC CCACTAATTT ACTCAAGGGT 60 TACCTCTTTT AGCCCCCA-A GTAATT-GAG TTATTAATAT TAA-ACCACT AACTTTATAA 4389 | | | |||| | |||||| |||||| || ||||||| || || ||||| |||||||||| TCCTTTTTTT AACCCCCAGG GTAATTAGAC TTATTAACAT AAACCCCACT AACTTTATAA 120 TTATAAGTCG GAATAGTCAA AAACGTCCCT TAAAATAT-T AAAGAAATCC GACTCCGCCT 4448 ||| |||| | |||||||| | |||||||||| ||||| | | |||||||||| ||| | | || TTA-AAGTAG GAATAGTCCA AAACGTCCCT TAAAACGTGT AAAGAAATCC GACCCAGACT 179 GGGATTACGC AGCCTGTGAC GGGCCGTCGT GCCTGCGACG GTCCGTCCTG CTGCTCCGTC 4508 |||||||||| | ||||||| || ||||||| |||||||||| |||||||||| | | | |||| GGGATTACGC AACCTGTGAT GGCCCGTCGT GCCTGCGACG GTCCGTCCTG CAGGT-CGTC 238 ACAGAGTTCA GAGACTCAA- TT-CTCTGAA GAGTCTGTGA CAGTCCGTCA CGCCTGTGAC 4566 || ||||| ||||||||| || | | || |||||||||| | |||||||| |||| ||||| GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 298 GGTCCATCCT GCCATTCCGT TACGAAGTTC AGAGAGTCGA -TTTCAGTAC CCATTTTTCA 4625 ||||| || | |||||||||| |||||||||| |||||||||| ||| ||||| ||| ||||| GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCA-ATTTCA 357 GAATTTCTAA GTGTTTTGAA ACGAGACACT CTCGACGGTC CGTCGTGCCC ATGACGGTCC 4685 |||||||||| |||||||||| ||||||| | |||||||||| | |||||| | |||||||||| GAATTTCTAA GTGTTTTGAA ACGAGACTC- CTCGACGGTC CATCGTGCTC ATGACGGTCC 416 GTCGTGGGTT CCGTCATCTC AGCCTGTTTT TCTATAAATA AAATCTGCTG CTCAAAATGA 4745 |||||||||| ||||| |||| | |||||||| || | ||||| ||||||||| ||||||| || GTCGTGGGTT CCGTCGTCTC AACCTGTTTT TCCAAAAATA AAATCTGCTA CTCAAAACGA 476 CTAAACAGGT CGTTACATTT AATAATAAAA ATGTGTCCTC CACTCTTCAT TCTTTTTTTG 4805 |||||||||| |||||||||| | CTAAACAGGT CGTTACATTT A......... .......... .......... .......... 497 TTTATTATAT AACTATCTCT TTATTTTATA ATTTTGACTA ATTTTTAATC ACATAAACTG 4865 .......... .......... .......... .......... .......... .......... 497 ATAAATATTC CAACCGTCTA ATTATTATAA TTTATAATAT ATACTTTATA AATCCTTTTA 4925 .......... .......... .......... .......... .......... .......... 497 ACTTTTTTTA ATTTCATGGG TACCCACCAT TTTCAGCCGT CTAATATATT ATTAAAGGGT 4985 .......... .......... .......... .......... .......... .......... 497 TGGTGATTAG TCAATTTTTT TCTAGTTGAT TTAAAGTTAA TTAAGTTAAA ATTATTCTTG 5045 .......... .......... .......... .......... .......... .......... 497 ATTATTCAAT TATGTAATGG TTAAAATTAT TTTTTTGTTG GTTATAAAGG AATATATTGG 5105 .......... .......... .......... .......... .......... .......... 497 TTGTAACTAA TCCAGTATGC CTTTTTAAGT AATGGATTAA TGGCTAAAAT ATAGCATGAG 5165 .......... .......... .......... .......... .......... .......... 497 TTATTGCTAT TCTATTTTTA ATAAAGTAAT ATTTTTTTTC TTTTTTAAAT TTTATAAATG 5225 | || ||| | |||||| |||| | | .......... .......... .......... ..TGTTCTTC CTACTTAAAT ATTATTATTA 525 TTTGTAATTA TTACTATTTG ATAGATACCA ACTCTATATC TCTACCATAT ATTTACCTAA 5285 ||| TTT....... .......... .......... .......... .......... .......... 528 TTAATTAAGG TATAATAATT TTTTTTAAGT GATATAGGTA TAAAATAGAC ATGATATATT 5345 .......... .......... .......... .......... .......... .......... 528 TCATTTTTCG AGAGTCGACA ATTAAAATTT ACACATAAAA TCTTCAATTT TTTTGAAATA 5405 .......... .......... .......... .......... .......... .......... 528 AAATTTATAC ATTTGTAAAC TACGTAACAA AAAGTACTAC AAGTCACAAT AATTGACAAT 5465 .......... .......... .......... .......... .......... .......... 528 TCAAAATATT TACAAGATAT ATGAAAAATT TACAGTCAAA GATAAACTTG TTAAAATCTC 5525 .......... .......... .......... .......... .......... .......... 528 AAAAATTCAA AATGTGTCGC ATAAATTGAA ATAGAGAGAA TAATTATTTA CGTTAATGAT 5585 .......... .......... .......... .......... .......... .......... 528 ATAATTGGAC ATAATTTCGA TAAGAAAAAT ATCCCGAATC TCCAATGGAA ACTTCTATCG 5645 .......... .......... .......... .......... .......... .......... 528 AGATATTTTT AGTTTTTAGT TGATGGAATG TGATAGAGTT TATGTACGAA CACATAAAAT 5705 .......... .......... .......... .......... .......... .......... 528 TCAAATTCTG ACTATTTCTT CTTGATCTAT ATAGGCTATT TATAAGTTTG ATATGCACTA 5765 .......... .......... .......... .......... .......... .......... 528 ATTGCTATTA TTGATAAGTC AAAAGTGCAT ATATAGAGAC AACAATTTAA GGACAAATAA 5825 .......... .......... .......... .......... .......... .......... 528 ATTAAACCAC CACAAGCATA TAGCCACTCA CTCTTCCAAT TTTTTAAAAG TCAAAAGTTG 5885 .......... .......... .......... .......... .......... .......... 528 GCCCTCTTTT GATAATTTCT CCACACTACA AAAAGCCAAT TTACATTGCA AAAATATTCA 5945 .......... .......... .......... .......... .......... .......... 528 AGAAATCAAC TTCTTTTCTC ATTTTCTTGT ACACAAAAAA TGCTAGGCAA GAAGTTTGGT 6005 .......... .......... .......... .......... .......... .......... 528 TCAATGAAGA AATTAGCCAA AAAGGCTAAG GTTATTAGAT CACCAAGTGC TAATTCTATT 6065 .......... .......... .......... .......... .......... .......... 528 TATAGCCATG ATGAATCCCA ACATCTTGAA TATTTACTTG TTAAGGATGA TCATGATCAT 6125 .......... .......... .......... .......... .......... .......... 528 GATCATGATG ATCAAGATCA AGATTATCAA GGGGTTAGTC CAACAAGTGC TAAATCATCA 6185 .......... .......... .......... .......... .......... .......... 528 AAAAAGATGG GAACATTTGC AGTGTATGTA GGGGAAGAAA GGGAGCGATT CGCGGTGCCA 6245 .......... .......... .......... .......... .......... .......... 528 ACGAGCTATC TTTCACATCC ATTGTTCAAG ATTTTGTTGG AGAAGACATA TAATGAGTTT 6305 .......... .......... .......... .......... .......... .......... 528 GGTTTTGAGC AAACAAATGG ACTTGTGGTT CCATGTAGTG TTGCTGCATT TCAAGAAGTG 6365 .......... .......... .......... .......... .......... .......... 528 GTCAATGCTG TGGAGTGTTG CAATGGGAAG TTTGATTTTG GTGGCTTGGT TGAGGAATTT 6425 .......... .......... .......... .......... .......... .......... 528 CTATAATTAG GTCTATATTA TTCAAGGTCT TATATATTCA CAACTACGTA CAACGTTTCA 6485 .......... .......... .......... .......... .......... .......... 528 GTCTCGAACA AGTTGGAATC AATTACTTTT CTAACTAGAG TGAAAAAATA GCATTTGGTG 6545 .......... .......... .......... .......... .......... .......... 528 AAATAGATTT TAAAAGGATT AAATCATATA TTAAGGAGGT AATTTACAAT TTAAAGTCTT 6605 .......... .......... .......... .......... .......... .......... 528 AGTTACTTTT GTACCAAAGA GATAGTGTAA ATTATTACAC CTTTAATATC ATAG 6659 | | |||| |||| ||| | | | || .......... .......... .....TACGA TTTATAACAC TATTAGAAAC AAAG 557 hqPGS_C09HBa0168F14.1-2+_SGN-E396055- (4275 4766,5198 5228) ******************************************************************************** EST sequence 196 -strand 640 n (File: SGN-E398551-) 1 TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAA TAATTTACTC AAGGTTACCT 61 CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT 121 AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC 181 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 241 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 301 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 361 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 421 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 481 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 541 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 601 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAAA Predicted gene structure (within gDNA segment 3667 to 7882): Exon 1 4277 4766 ( 490 n); cDNA 1 490 ( 490 n); score: 0.879 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 491 521 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 522 550 ( 29 n); score: 0.621 PPA cDNA 629 640 MATCH C09HBa0168F14.1-2+ SGN-E398551- 0.879 550 0.859 C PGS_C09HBa0168F14.1-2+_SGN-E398551- (4277 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TAGCATATAA TTAAGAATAA AAGATGGCAA TAATAACTCA CTAGTTTACT CAAGGTTACC 4336 |||||||||| |||||||||| ||||||| || ||||||| || || |||||| |||||||||| TAGCATATAA TTAAGAATAA AAGATGG-AA TAATAACCCA ATAATTTACT CAAGGTTACC 59 TCTTTTAGCC CCCAAGTAAT T-GAGTTATT AATATTAAAC CACTAACTTT ATAATTATAA 4395 ||||||| || |||| ||||| | || ||||| || || || | |||||||||| ||||||| || TCTTTTAACC CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTA-AA 118 GTCGGAATAG TCAAAAACGT CCCTTAAAAT AT-TAAAGAA ATCCGACTCC GCCTGGGATT 4454 || ||||||| || ||||||| ||||||||| | ||||||| ||||||| | | |||||||| GTAGGAATAG TCCAAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA GACTGGGATT 178 ACGCAGCCTG TGACGGGCCG TCGTGCCTGC GACGGTCCGT CCTGCTGCTC CGTCACAGAG 4514 ||||| |||| ||| || ||| |||||||||| |||||||||| ||||| | | |||| || | ACGCAACCTG TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGGT- CGTCGCAAGG 237 TTCAGAGACT CAA-TT-CTC TGAAGAGTCT GTGACAGTCC GTCACGCCTG TGACGGTCCA 4572 |||||||||| ||| || | | |||||||| ||||| |||| |||||||| | ||||||||| TTCAGAGACT CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG TGACGGTCCG 297 TCCTGCCATT CCGTTACGAA GTTCAGAGAG TCGA-TTTCA GTACCCATTT TTCAGAATTT 4631 || ||||||| |||||||||| |||||||||| |||| ||| | ||||||| | |||||||||| TCGTGCCATT CCGTTACGAA GTTCAGAGAG TCGATTTTTA GTACCCA-AT TTCAGAATTT 356 CTAAGTGTTT TGAAACGAGA CACTCTCGAC GGTCCGTCGT GCCCATGACG GTCCGTCGTG 4691 |||||||||| |||||||||| | | |||||| ||||| |||| || ||||||| |||||||||| CTAAGTGTTT TGAAACGAGA CTC-CTCGAC GGTCCATCGT GCTCATGACG GTCCGTCGTG 415 GGTTCCGTCA TCTCAGCCTG TTTTTCTATA AATAAAATCT GCTGCTCAAA ATGACTAAAC 4751 ||||||||| ||||| |||| |||||| | | |||||||||| ||| |||||| | |||||||| GGTTCCGTCG TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA ACGACTAAAC 475 AGGTCGTTAC ATTTAATAAT AAAAATGTGT CCTCCACTCT TCATTCTTTT TTTGTTTATT 4811 |||||||||| ||||| AGGTCGTTAC ATTTA..... .......... .......... .......... .......... 490 ATATAACTAT CTCTTTATTT TATAATTTTG ACTAATTTTT AATCACATAA ACTGATAAAT 4871 .......... .......... .......... .......... .......... .......... 490 ATTCCAACCG TCTAATTATT ATAATTTATA ATATATACTT TATAAATCCT TTTAACTTTT 4931 .......... .......... .......... .......... .......... .......... 490 TTTAATTTCA TGGGTACCCA CCATTTTCAG CCGTCTAATA TATTATTAAA GGGTTGGTGA 4991 .......... .......... .......... .......... .......... .......... 490 TTAGTCAATT TTTTTCTAGT TGATTTAAAG TTAATTAAGT TAAAATTATT CTTGATTATT 5051 .......... .......... .......... .......... .......... .......... 490 CAATTATGTA ATGGTTAAAA TTATTTTTTT GTTGGTTATA AAGGAATATA TTGGTTGTAA 5111 .......... .......... .......... .......... .......... .......... 490 CTAATCCAGT ATGCCTTTTT AAGTAATGGA TTAATGGCTA AAATATAGCA TGAGTTATTG 5171 .......... .......... .......... .......... .......... .......... 490 CTATTCTATT TTTAATAAAG TAATATTTTT TTTCTTTTTT AAATTTTATA AATGTTTGTA 5231 | || ||| | || |||| |||| | | ||| .......... .......... ......TGTT CTTCCTACTT AAATATTATT ATTATTT... 521 ATTATTACTA TTTGATAGAT ACCAACTCTA TATCTCTACC ATATATTTAC CTAATTAATT 5291 .......... .......... .......... .......... .......... .......... 521 AAGGTATAAT AATTTTTTTT AAGTGATATA GGTATAAAAT AGACATGATA TATTTCATTT 5351 .......... .......... .......... .......... .......... .......... 521 TTCGAGAGTC GACAATTAAA ATTTACACAT AAAATCTTCA ATTTTTTTGA AATAAAATTT 5411 .......... .......... .......... .......... .......... .......... 521 ATACATTTGT AAACTACGTA ACAAAAAGTA CTACAAGTCA CAATAATTGA CAATTCAAAA 5471 .......... .......... .......... .......... .......... .......... 521 TATTTACAAG ATATATGAAA AATTTACAGT CAAAGATAAA CTTGTTAAAA TCTCAAAAAT 5531 .......... .......... .......... .......... .......... .......... 521 TCAAAATGTG TCGCATAAAT TGAAATAGAG AGAATAATTA TTTACGTTAA TGATATAATT 5591 .......... .......... .......... .......... .......... .......... 521 GGACATAATT TCGATAAGAA AAATATCCCG AATCTCCAAT GGAAACTTCT ATCGAGATAT 5651 .......... .......... .......... .......... .......... .......... 521 TTTTAGTTTT TAGTTGATGG AATGTGATAG AGTTTATGTA CGAACACATA AAATTCAAAT 5711 .......... .......... .......... .......... .......... .......... 521 TCTGACTATT TCTTCTTGAT CTATATAGGC TATTTATAAG TTTGATATGC ACTAATTGCT 5771 .......... .......... .......... .......... .......... .......... 521 ATTATTGATA AGTCAAAAGT GCATATATAG AGACAACAAT TTAAGGACAA ATAAATTAAA 5831 .......... .......... .......... .......... .......... .......... 521 CCACCACAAG CATATAGCCA CTCACTCTTC CAATTTTTTA AAAGTCAAAA GTTGGCCCTC 5891 .......... .......... .......... .......... .......... .......... 521 TTTTGATAAT TTCTCCACAC TACAAAAAGC CAATTTACAT TGCAAAAATA TTCAAGAAAT 5951 .......... .......... .......... .......... .......... .......... 521 CAACTTCTTT TCTCATTTTC TTGTACACAA AAAATGCTAG GCAAGAAGTT TGGTTCAATG 6011 .......... .......... .......... .......... .......... .......... 521 AAGAAATTAG CCAAAAAGGC TAAGGTTATT AGATCACCAA GTGCTAATTC TATTTATAGC 6071 .......... .......... .......... .......... .......... .......... 521 CATGATGAAT CCCAACATCT TGAATATTTA CTTGTTAAGG ATGATCATGA TCATGATCAT 6131 .......... .......... .......... .......... .......... .......... 521 GATGATCAAG ATCAAGATTA TCAAGGGGTT AGTCCAACAA GTGCTAAATC ATCAAAAAAG 6191 .......... .......... .......... .......... .......... .......... 521 ATGGGAACAT TTGCAGTGTA TGTAGGGGAA GAAAGGGAGC GATTCGCGGT GCCAACGAGC 6251 .......... .......... .......... .......... .......... .......... 521 TATCTTTCAC ATCCATTGTT CAAGATTTTG TTGGAGAAGA CATATAATGA GTTTGGTTTT 6311 .......... .......... .......... .......... .......... .......... 521 GAGCAAACAA ATGGACTTGT GGTTCCATGT AGTGTTGCTG CATTTCAAGA AGTGGTCAAT 6371 .......... .......... .......... .......... .......... .......... 521 GCTGTGGAGT GTTGCAATGG GAAGTTTGAT TTTGGTGGCT TGGTTGAGGA ATTTCTATAA 6431 .......... .......... .......... .......... .......... .......... 521 TTAGGTCTAT ATTATTCAAG GTCTTATATA TTCACAACTA CGTACAACGT TTCAGTCTCG 6491 .......... .......... .......... .......... .......... .......... 521 AACAAGTTGG AATCAATTAC TTTTCTAACT AGAGTGAAAA AATAGCATTT GGTGAAATAG 6551 .......... .......... .......... .......... .......... .......... 521 ATTTTAAAAG GATTAAATCA TATATTAAGG AGGTAATTTA CAATTTAAAG TCTTAGTTAC 6611 .......... .......... .......... .......... .......... .......... 521 TTTTGTACCA AAGAGATAGT GTAAATTATT ACACCTTTAA TATCATAG 6659 | | |||| |||| ||| | || || .......... .........T ACGATTTATA ACACTATTAG AAACAAAG 550 hqPGS_C09HBa0168F14.1-2+_SGN-E398551- (4277 4766,5198 5228) ******************************************************************************** EST sequence 194 -strand 630 n (File: SGN-E396038-) 1 TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC AAGGTTACCT CTTTTAACCC 61 CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA TAATTAAAGT AGGAATAGTC 121 CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA CTGGGATTAC GCAACCTGTG 181 ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC AGAGACTCAA 241 TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG TGCCATTCCG 301 TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA GTGTTTTGAA 361 ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC CGTCGTCTCA 421 ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC GTTACATTTA 481 TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT AGAAACAAAG 541 ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA ATTTACTCAT 601 TTTTCATAGA GTTAAATAAT AAAAAAAAAA Predicted gene structure (within gDNA segment 3677 to 7882): Exon 1 4287 4766 ( 480 n); cDNA 1 480 ( 480 n); score: 0.878 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 481 511 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 512 540 ( 29 n); score: 0.621 PPA cDNA 621 630 MATCH C09HBa0168F14.1-2+ SGN-E396038- 0.878 540 0.857 C PGS_C09HBa0168F14.1-2+_SGN-E396038- (4287 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): TTAAGAATAA AAGATGGCAA TAATAACTCA CTAGTTTACT CAAGGTTACC TCTTTTAGCC 4346 |||||||||| ||||||| || ||||||| || ||| |||||| |||||||||| ||||||| || TTAAGAATAA AAGATGG-AA TAATAACCCA CTAATTTACT CAAGGTTACC TCTTTTAACC 59 CCCAAGTAAT T-GAGTTATT AATATTAAAC CACTAACTTT ATAATTATAA GTCGGAATAG 4405 |||| ||||| | || ||||| || || || | |||||||||| ||||||| || || ||||||| CCCAGGTAAT TAGACTTATT AACATAAACC CACTAACTTT ATAATTA-AA GTAGGAATAG 118 TCAAAAACGT CCCTTAAAAT AT-TAAAGAA ATCCGACTCC GCCTGGGATT ACGCAGCCTG 4464 || ||||||| ||||||||| | ||||||| ||||||| | | |||||||| ||||| |||| TCCAAAACGT CCCTTAAAAC GTGTAAAGAA ATCCGACCCA GACTGGGATT ACGCAACCTG 178 TGACGGGCCG TCGTGCCTGC GACGGTCCGT CCTGCTGCTC CGTCACAGAG TTCAGAGACT 4524 ||| || ||| |||||||||| |||||||||| ||||| | | |||| || | |||||||||| TGATGGCCCG TCGTGCCTGC GACGGTCCGT CCTGCAGGT- CGTCGCAAGG TTCAGAGACT 237 CAA-TT-CTC TGAAGAGTCT GTGACAGTCC GTCACGCCTG TGACGGTCCA TCCTGCCATT 4582 ||| || | | |||||||| ||||| |||| |||||||| | ||||||||| || ||||||| CAATTTCCAC CAAAGAGTCT GTGACGGTCC GTCACGCCCG TGACGGTCCG TCGTGCCATT 297 CCGTTACGAA GTTCAGAGAG TCGA-TTTCA GTACCCATTT TTCAGAATTT CTAAGTGTTT 4641 |||||||||| |||||||||| |||| ||| | ||||||| | |||||||||| |||||||||| CCGTTACGAA GTTCAGAGAG TCGATTTTTA GTACCCA-AT TTCAGAATTT CTAAGTGTTT 356 TGAAACGAGA CACTCTCGAC GGTCCGTCGT GCCCATGACG GTCCGTCGTG GGTTCCGTCA 4701 |||||||||| | | |||||| ||||| |||| || ||||||| |||||||||| ||||||||| TGAAACGAGA CTC-CTCGAC GGTCCATCGT GCTCATGACG GTCCGTCGTG GGTTCCGTCG 415 TCTCAGCCTG TTTTTCTATA AATAAAATCT GCTGCTCAAA ATGACTAAAC AGGTCGTTAC 4761 ||||| |||| |||||| | | |||||||||| ||| |||||| | |||||||| |||||||||| TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA ACGACTAAAC AGGTCGTTAC 475 ATTTAATAAT AAAAATGTGT CCTCCACTCT TCATTCTTTT TTTGTTTATT ATATAACTAT 4821 ||||| ATTTA..... .......... .......... .......... .......... .......... 480 CTCTTTATTT TATAATTTTG ACTAATTTTT AATCACATAA ACTGATAAAT ATTCCAACCG 4881 .......... .......... .......... .......... .......... .......... 480 TCTAATTATT ATAATTTATA ATATATACTT TATAAATCCT TTTAACTTTT TTTAATTTCA 4941 .......... .......... .......... .......... .......... .......... 480 TGGGTACCCA CCATTTTCAG CCGTCTAATA TATTATTAAA GGGTTGGTGA TTAGTCAATT 5001 .......... .......... .......... .......... .......... .......... 480 TTTTTCTAGT TGATTTAAAG TTAATTAAGT TAAAATTATT CTTGATTATT CAATTATGTA 5061 .......... .......... .......... .......... .......... .......... 480 ATGGTTAAAA TTATTTTTTT GTTGGTTATA AAGGAATATA TTGGTTGTAA CTAATCCAGT 5121 .......... .......... .......... .......... .......... .......... 480 ATGCCTTTTT AAGTAATGGA TTAATGGCTA AAATATAGCA TGAGTTATTG CTATTCTATT 5181 .......... .......... .......... .......... .......... .......... 480 TTTAATAAAG TAATATTTTT TTTCTTTTTT AAATTTTATA AATGTTTGTA ATTATTACTA 5241 | || ||| | || |||| |||| | | ||| .......... ......TGTT CTTCCTACTT AAATATTATT ATTATTT... .......... 511 TTTGATAGAT ACCAACTCTA TATCTCTACC ATATATTTAC CTAATTAATT AAGGTATAAT 5301 .......... .......... .......... .......... .......... .......... 511 AATTTTTTTT AAGTGATATA GGTATAAAAT AGACATGATA TATTTCATTT TTCGAGAGTC 5361 .......... .......... .......... .......... .......... .......... 511 GACAATTAAA ATTTACACAT AAAATCTTCA ATTTTTTTGA AATAAAATTT ATACATTTGT 5421 .......... .......... .......... .......... .......... .......... 511 AAACTACGTA ACAAAAAGTA CTACAAGTCA CAATAATTGA CAATTCAAAA TATTTACAAG 5481 .......... .......... .......... .......... .......... .......... 511 ATATATGAAA AATTTACAGT CAAAGATAAA CTTGTTAAAA TCTCAAAAAT TCAAAATGTG 5541 .......... .......... .......... .......... .......... .......... 511 TCGCATAAAT TGAAATAGAG AGAATAATTA TTTACGTTAA TGATATAATT GGACATAATT 5601 .......... .......... .......... .......... .......... .......... 511 TCGATAAGAA AAATATCCCG AATCTCCAAT GGAAACTTCT ATCGAGATAT TTTTAGTTTT 5661 .......... .......... .......... .......... .......... .......... 511 TAGTTGATGG AATGTGATAG AGTTTATGTA CGAACACATA AAATTCAAAT TCTGACTATT 5721 .......... .......... .......... .......... .......... .......... 511 TCTTCTTGAT CTATATAGGC TATTTATAAG TTTGATATGC ACTAATTGCT ATTATTGATA 5781 .......... .......... .......... .......... .......... .......... 511 AGTCAAAAGT GCATATATAG AGACAACAAT TTAAGGACAA ATAAATTAAA CCACCACAAG 5841 .......... .......... .......... .......... .......... .......... 511 CATATAGCCA CTCACTCTTC CAATTTTTTA AAAGTCAAAA GTTGGCCCTC TTTTGATAAT 5901 .......... .......... .......... .......... .......... .......... 511 TTCTCCACAC TACAAAAAGC CAATTTACAT TGCAAAAATA TTCAAGAAAT CAACTTCTTT 5961 .......... .......... .......... .......... .......... .......... 511 TCTCATTTTC TTGTACACAA AAAATGCTAG GCAAGAAGTT TGGTTCAATG AAGAAATTAG 6021 .......... .......... .......... .......... .......... .......... 511 CCAAAAAGGC TAAGGTTATT AGATCACCAA GTGCTAATTC TATTTATAGC CATGATGAAT 6081 .......... .......... .......... .......... .......... .......... 511 CCCAACATCT TGAATATTTA CTTGTTAAGG ATGATCATGA TCATGATCAT GATGATCAAG 6141 .......... .......... .......... .......... .......... .......... 511 ATCAAGATTA TCAAGGGGTT AGTCCAACAA GTGCTAAATC ATCAAAAAAG ATGGGAACAT 6201 .......... .......... .......... .......... .......... .......... 511 TTGCAGTGTA TGTAGGGGAA GAAAGGGAGC GATTCGCGGT GCCAACGAGC TATCTTTCAC 6261 .......... .......... .......... .......... .......... .......... 511 ATCCATTGTT CAAGATTTTG TTGGAGAAGA CATATAATGA GTTTGGTTTT GAGCAAACAA 6321 .......... .......... .......... .......... .......... .......... 511 ATGGACTTGT GGTTCCATGT AGTGTTGCTG CATTTCAAGA AGTGGTCAAT GCTGTGGAGT 6381 .......... .......... .......... .......... .......... .......... 511 GTTGCAATGG GAAGTTTGAT TTTGGTGGCT TGGTTGAGGA ATTTCTATAA TTAGGTCTAT 6441 .......... .......... .......... .......... .......... .......... 511 ATTATTCAAG GTCTTATATA TTCACAACTA CGTACAACGT TTCAGTCTCG AACAAGTTGG 6501 .......... .......... .......... .......... .......... .......... 511 AATCAATTAC TTTTCTAACT AGAGTGAAAA AATAGCATTT GGTGAAATAG ATTTTAAAAG 6561 .......... .......... .......... .......... .......... .......... 511 GATTAAATCA TATATTAAGG AGGTAATTTA CAATTTAAAG TCTTAGTTAC TTTTGTACCA 6621 .......... .......... .......... .......... .......... .......... 511 AAGAGATAGT GTAAATTATT ACACCTTTAA TATCATAG 6659 | | |||| |||| ||| | || || .........T ACGATTTATA ACACTATTAG AAACAAAG 540 hqPGS_C09HBa0168F14.1-2+_SGN-E396038- (4287 4766,5198 5228) ******************************************************************************** EST sequence 199 -strand 525 n (File: SGN-E396069-) 1 AAAGTAGGAA TAGTCCAAAA CGTCCCTTAA AACGTGTAAA GAAATCCGAC CCCCACCGGG 61 ATTACGCAAC CTGTGATGGC CCGTCGTGCC TGCGACGGTC CGTCCTGCAG GTCGTCGCAA 121 GGTTCAGAGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC 181 CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCAA TTTCAGAATT 241 TCTAAGTGTT TTGAAACGAG ACTCCTCGAC GGTCCATCGT GCTCATGACG GTCCGTCGTG 301 GGTTCCGTCG TCTCAACCTG TTTTTCCAAA AATAAAATCT GCTACTCAAA ACGACTAAAC 361 AGGTCGTTAC ATTTATGTTC TTCCTACTTA AATATTATTA TTATTTTACG ATTTATAACA 421 CTATTAGAAA CAAAGATTTT CTCAACCATG AATTAATGAA AAAATTATGC CATAAAATAT 481 AAAAAATTTA CTCATTTTTC ATTGAGCTAA TTCATAAAAA AAAAA Predicted gene structure (within gDNA segment 3062 to 7882): Exon 1 4394 4766 ( 373 n); cDNA 2 375 ( 374 n); score: 0.874 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 376 406 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 407 435 ( 29 n); score: 0.621 PPA cDNA 514 525 MATCH C09HBa0168F14.1-2+ SGN-E396069- 0.874 433 0.825 C PGS_C09HBa0168F14.1-2+_SGN-E396069- (4394 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): AAGTCGGAAT AGTCAAAAAC GTCCCTTAAA ATAT-TAAAG AAATCCGACT CCGCCTGGGA 4452 |||| ||||| |||| ||||| |||||||||| | | ||||| ||||||||| || | |||| AAGTAGGAAT AGTCCAAAAC GTCCCTTAAA ACGTGTAAAG AAATCCGACC CCCACCGGGA 61 TTACGCAGCC TGTGACGGGC CGTCGTGCCT GCGACGGTCC GTCCTGCTGC TCCGTCACAG 4512 ||||||| || ||||| || | |||||||||| |||||||||| ||||||| | | |||| || TTACGCAACC TGTGATGGCC CGTCGTGCCT GCGACGGTCC GTCCTGCAGG T-CGTCGCAA 120 AGTTCAGAGA CTCAA-TT-C TCTGAAGAGT CTGTGACAGT CCGTCACGCC TGTGACGGTC 4570 ||||||||| ||||| || | | |||||| ||||||| || |||||||||| ||||||||| GGTTCAGAGA CTCAATTTCC ACCAAAGAGT CTGTGACGGT CCGTCACGCC CGTGACGGTC 180 CATCCTGCCA TTCCGTTACG AAGTTCAGAG AGTCGA-TTT CAGTACCCAT TTTTCAGAAT 4629 | || ||||| |||||||||| |||||||||| |||||| ||| |||||||| ||||||||| CGTCGTGCCA TTCCGTTACG AAGTTCAGAG AGTCGATTTT TAGTACCCA- ATTTCAGAAT 239 TTCTAAGTGT TTTGAAACGA GACACTCTCG ACGGTCCGTC GTGCCCATGA CGGTCCGTCG 4689 |||||||||| |||||||||| ||| | |||| ||||||| || |||| ||||| |||||||||| TTCTAAGTGT TTTGAAACGA GACTC-CTCG ACGGTCCATC GTGCTCATGA CGGTCCGTCG 298 TGGGTTCCGT CATCTCAGCC TGTTTTTCTA TAAATAAAAT CTGCTGCTCA AAATGACTAA 4749 |||||||||| | ||||| || |||||||| | ||||||||| ||||| |||| ||| |||||| TGGGTTCCGT CGTCTCAACC TGTTTTTCCA AAAATAAAAT CTGCTACTCA AAACGACTAA 358 ACAGGTCGTT ACATTTAATA ATAAAAATGT GTCCTCCACT CTTCATTCTT TTTTTGTTTA 4809 |||||||||| ||||||| ACAGGTCGTT ACATTTA... .......... .......... .......... .......... 375 TTATATAACT ATCTCTTTAT TTTATAATTT TGACTAATTT TTAATCACAT AAACTGATAA 4869 .......... .......... .......... .......... .......... .......... 375 ATATTCCAAC CGTCTAATTA TTATAATTTA TAATATATAC TTTATAAATC CTTTTAACTT 4929 .......... .......... .......... .......... .......... .......... 375 TTTTTAATTT CATGGGTACC CACCATTTTC AGCCGTCTAA TATATTATTA AAGGGTTGGT 4989 .......... .......... .......... .......... .......... .......... 375 GATTAGTCAA TTTTTTTCTA GTTGATTTAA AGTTAATTAA GTTAAAATTA TTCTTGATTA 5049 .......... .......... .......... .......... .......... .......... 375 TTCAATTATG TAATGGTTAA AATTATTTTT TTGTTGGTTA TAAAGGAATA TATTGGTTGT 5109 .......... .......... .......... .......... .......... .......... 375 AACTAATCCA GTATGCCTTT TTAAGTAATG GATTAATGGC TAAAATATAG CATGAGTTAT 5169 .......... .......... .......... .......... .......... .......... 375 TGCTATTCTA TTTTTAATAA AGTAATATTT TTTTTCTTTT TTAAATTTTA TAAATGTTTG 5229 | || ||| | |||||| ||| | | | ||| .......... .......... ........TG TTCTTCCTAC TTAAATATTA TTATTATTT. 406 TAATTATTAC TATTTGATAG ATACCAACTC TATATCTCTA CCATATATTT ACCTAATTAA 5289 .......... .......... .......... .......... .......... .......... 406 TTAAGGTATA ATAATTTTTT TTAAGTGATA TAGGTATAAA ATAGACATGA TATATTTCAT 5349 .......... .......... .......... .......... .......... .......... 406 TTTTCGAGAG TCGACAATTA AAATTTACAC ATAAAATCTT CAATTTTTTT GAAATAAAAT 5409 .......... .......... .......... .......... .......... .......... 406 TTATACATTT GTAAACTACG TAACAAAAAG TACTACAAGT CACAATAATT GACAATTCAA 5469 .......... .......... .......... .......... .......... .......... 406 AATATTTACA AGATATATGA AAAATTTACA GTCAAAGATA AACTTGTTAA AATCTCAAAA 5529 .......... .......... .......... .......... .......... .......... 406 ATTCAAAATG TGTCGCATAA ATTGAAATAG AGAGAATAAT TATTTACGTT AATGATATAA 5589 .......... .......... .......... .......... .......... .......... 406 TTGGACATAA TTTCGATAAG AAAAATATCC CGAATCTCCA ATGGAAACTT CTATCGAGAT 5649 .......... .......... .......... .......... .......... .......... 406 ATTTTTAGTT TTTAGTTGAT GGAATGTGAT AGAGTTTATG TACGAACACA TAAAATTCAA 5709 .......... .......... .......... .......... .......... .......... 406 ATTCTGACTA TTTCTTCTTG ATCTATATAG GCTATTTATA AGTTTGATAT GCACTAATTG 5769 .......... .......... .......... .......... .......... .......... 406 CTATTATTGA TAAGTCAAAA GTGCATATAT AGAGACAACA ATTTAAGGAC AAATAAATTA 5829 .......... .......... .......... .......... .......... .......... 406 AACCACCACA AGCATATAGC CACTCACTCT TCCAATTTTT TAAAAGTCAA AAGTTGGCCC 5889 .......... .......... .......... .......... .......... .......... 406 TCTTTTGATA ATTTCTCCAC ACTACAAAAA GCCAATTTAC ATTGCAAAAA TATTCAAGAA 5949 .......... .......... .......... .......... .......... .......... 406 ATCAACTTCT TTTCTCATTT TCTTGTACAC AAAAAATGCT AGGCAAGAAG TTTGGTTCAA 6009 .......... .......... .......... .......... .......... .......... 406 TGAAGAAATT AGCCAAAAAG GCTAAGGTTA TTAGATCACC AAGTGCTAAT TCTATTTATA 6069 .......... .......... .......... .......... .......... .......... 406 GCCATGATGA ATCCCAACAT CTTGAATATT TACTTGTTAA GGATGATCAT GATCATGATC 6129 .......... .......... .......... .......... .......... .......... 406 ATGATGATCA AGATCAAGAT TATCAAGGGG TTAGTCCAAC AAGTGCTAAA TCATCAAAAA 6189 .......... .......... .......... .......... .......... .......... 406 AGATGGGAAC ATTTGCAGTG TATGTAGGGG AAGAAAGGGA GCGATTCGCG GTGCCAACGA 6249 .......... .......... .......... .......... .......... .......... 406 GCTATCTTTC ACATCCATTG TTCAAGATTT TGTTGGAGAA GACATATAAT GAGTTTGGTT 6309 .......... .......... .......... .......... .......... .......... 406 TTGAGCAAAC AAATGGACTT GTGGTTCCAT GTAGTGTTGC TGCATTTCAA GAAGTGGTCA 6369 .......... .......... .......... .......... .......... .......... 406 ATGCTGTGGA GTGTTGCAAT GGGAAGTTTG ATTTTGGTGG CTTGGTTGAG GAATTTCTAT 6429 .......... .......... .......... .......... .......... .......... 406 AATTAGGTCT ATATTATTCA AGGTCTTATA TATTCACAAC TACGTACAAC GTTTCAGTCT 6489 .......... .......... .......... .......... .......... .......... 406 CGAACAAGTT GGAATCAATT ACTTTTCTAA CTAGAGTGAA AAAATAGCAT TTGGTGAAAT 6549 .......... .......... .......... .......... .......... .......... 406 AGATTTTAAA AGGATTAAAT CATATATTAA GGAGGTAATT TACAATTTAA AGTCTTAGTT 6609 .......... .......... .......... .......... .......... .......... 406 ACTTTTGTAC CAAAGAGATA GTGTAAATTA TTACACCTTT AATATCATAG 6659 | | ||| | |||| || | | || || .......... .......... .TACGATTTA TAACACTATT AGAAACAAAG 435 hqPGS_C09HBa0168F14.1-2+_SGN-E396069- (4394 4766,5198 5228) ******************************************************************************** EST sequence 190 -strand 519 n (File: SGN-E374998-) 1 GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 61 GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT CGCAAGGTTC 121 AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA CGGTCCGTCG 181 TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA GAATTTCTAA 241 GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG TCGTGGGTTC 301 CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC TAAACAGGTC 361 GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA TAACACTATT 421 AGAAACAAAG ATTTTCTCAA CCATGAATTA ATGAAAAAAT TATGCCATAA AATATAAAAA 481 ATTTACTCAT TTTTCATTGA GCTAATTCAT AAAAAAAAA Predicted gene structure (within gDNA segment 3112 to 7872): Exon 1 4399 4766 ( 368 n); cDNA 1 370 ( 370 n); score: 0.865 Intron 1 4767 5197 ( 431 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 5198 5228 ( 31 n); cDNA 371 401 ( 31 n); score: 0.710 Intron 2 5229 6630 (1402 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 6631 6659 ( 29 n); cDNA 402 430 ( 29 n); score: 0.621 PPA cDNA 509 519 MATCH C09HBa0168F14.1-2+ SGN-E374998- 0.865 428 0.825 C PGS_C09HBa0168F14.1-2+_SGN-E374998- (4399 4766,5198 5228,6631 6659) Alignment (genomic DNA sequence = upper lines): GGAATAGTCA AAAACGTCCC TTAAAA--TA TTAAAGAAAT CCGACTCCGC CTGGGATTAC 4456 |||||||| | |||||||| |||||| | | |||||||| ||||| | | |||||||||| GGAATAGTAC ATAACGTCCC TTAAAACGTG TAAAAGAAAT CCGACCCAGA CTGGGATTAC 60 GCAGCCTGTG ACGGGCCGTC GTGCCTGCGA CGGTCCGTCC TGCTGCTCCG TCACAGAGTT 4516 ||| |||||| | || ||||| |||||||||| |||||||||| ||| | | || || || ||| GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGT-CG TCGCAAGGTT 119 CAGAGACTCA A-TT-CTCTG AAGAGTCTGT GACAGTCCGT CACGCCTGTG ACGGTCCATC 4574 |||||||||| | || | | |||||||||| ||| |||||| |||||| ||| ||||||| || CAGAGACTCA ATTTCCACCA AAGAGTCTGT GACGGTCCGT CACGCCCGTG ACGGTCCGTC 179 CTGCCATTCC GTTACGAAGT TCAGAGAGTC GA-TTTCAGT ACCCATTTTT CAGAATTTCT 4633 ||||||||| |||||||||| |||||||||| || ||| ||| ||||| ||| |||||||||| GTGCCATTCC GTTACGAAGT TCAGAGAGTC GATTTTTAGT ACCCA-ATTT CAGAATTTCT 238 AAGTGTTTTG AAACGAGACA CTCTCGACGG TCCGTCGTGC CCATGACGGT CCGTCGTGGG 4693 |||||||||| ||||||||| | |||||||| ||| |||||| ||||||||| |||||||||| AAGTGTTTTG AAACGAGACT C-CTCGACGG TCCATCGTGC TCATGACGGT CCGTCGTGGG 297 TTCCGTCATC TCAGCCTGTT TTTCTATAAA TAAAATCTGC TGCTCAAAAT GACTAAACAG 4753 ||||||| || ||| |||||| |||| | ||| |||||||||| | ||||||| |||||||||| TTCCGTCGTC TCAACCTGTT TTTCCAAAAA TAAAATCTGC TACTCAAAAC GACTAAACAG 357 GTCGTTACAT TTAATAATAA AAATGTGTCC TCCACTCTTC ATTCTTTTTT TGTTTATTAT 4813 |||||||||| ||| GTCGTTACAT TTA....... .......... .......... .......... .......... 370 ATAACTATCT CTTTATTTTA TAATTTTGAC TAATTTTTAA TCACATAAAC TGATAAATAT 4873 .......... .......... .......... .......... .......... .......... 370 TCCAACCGTC TAATTATTAT AATTTATAAT ATATACTTTA TAAATCCTTT TAACTTTTTT 4933 .......... .......... .......... .......... .......... .......... 370 TAATTTCATG GGTACCCACC ATTTTCAGCC GTCTAATATA TTATTAAAGG GTTGGTGATT 4993 .......... .......... .......... .......... .......... .......... 370 AGTCAATTTT TTTCTAGTTG ATTTAAAGTT AATTAAGTTA AAATTATTCT TGATTATTCA 5053 .......... .......... .......... .......... .......... .......... 370 ATTATGTAAT GGTTAAAATT ATTTTTTTGT TGGTTATAAA GGAATATATT GGTTGTAACT 5113 .......... .......... .......... .......... .......... .......... 370 AATCCAGTAT GCCTTTTTAA GTAATGGATT AATGGCTAAA ATATAGCATG AGTTATTGCT 5173 .......... .......... .......... .......... .......... .......... 370 ATTCTATTTT TAATAAAGTA ATATTTTTTT TCTTTTTTAA ATTTTATAAA TGTTTGTAAT 5233 | || | || | |||| || |||| | | ||| .......... .......... ....TGTTCT TCCTACTTAA ATATTATTAT TATTT..... 401 TATTACTATT TGATAGATAC CAACTCTATA TCTCTACCAT ATATTTACCT AATTAATTAA 5293 .......... .......... .......... .......... .......... .......... 401 GGTATAATAA TTTTTTTTAA GTGATATAGG TATAAAATAG ACATGATATA TTTCATTTTT 5353 .......... .......... .......... .......... .......... .......... 401 CGAGAGTCGA CAATTAAAAT TTACACATAA AATCTTCAAT TTTTTTGAAA TAAAATTTAT 5413 .......... .......... .......... .......... .......... .......... 401 ACATTTGTAA ACTACGTAAC AAAAAGTACT ACAAGTCACA ATAATTGACA ATTCAAAATA 5473 .......... .......... .......... .......... .......... .......... 401 TTTACAAGAT ATATGAAAAA TTTACAGTCA AAGATAAACT TGTTAAAATC TCAAAAATTC 5533 .......... .......... .......... .......... .......... .......... 401 AAAATGTGTC GCATAAATTG AAATAGAGAG AATAATTATT TACGTTAATG ATATAATTGG 5593 .......... .......... .......... .......... .......... .......... 401 ACATAATTTC GATAAGAAAA ATATCCCGAA TCTCCAATGG AAACTTCTAT CGAGATATTT 5653 .......... .......... .......... .......... .......... .......... 401 TTAGTTTTTA GTTGATGGAA TGTGATAGAG TTTATGTACG AACACATAAA ATTCAAATTC 5713 .......... .......... .......... .......... .......... .......... 401 TGACTATTTC TTCTTGATCT ATATAGGCTA TTTATAAGTT TGATATGCAC TAATTGCTAT 5773 .......... .......... .......... .......... .......... .......... 401 TATTGATAAG TCAAAAGTGC ATATATAGAG ACAACAATTT AAGGACAAAT AAATTAAACC 5833 .......... .......... .......... .......... .......... .......... 401 ACCACAAGCA TATAGCCACT CACTCTTCCA ATTTTTTAAA AGTCAAAAGT TGGCCCTCTT 5893 .......... .......... .......... .......... .......... .......... 401 TTGATAATTT CTCCACACTA CAAAAAGCCA ATTTACATTG CAAAAATATT CAAGAAATCA 5953 .......... .......... .......... .......... .......... .......... 401 ACTTCTTTTC TCATTTTCTT GTACACAAAA AATGCTAGGC AAGAAGTTTG GTTCAATGAA 6013 .......... .......... .......... .......... .......... .......... 401 GAAATTAGCC AAAAAGGCTA AGGTTATTAG ATCACCAAGT GCTAATTCTA TTTATAGCCA 6073 .......... .......... .......... .......... .......... .......... 401 TGATGAATCC CAACATCTTG AATATTTACT TGTTAAGGAT GATCATGATC ATGATCATGA 6133 .......... .......... .......... .......... .......... .......... 401 TGATCAAGAT CAAGATTATC AAGGGGTTAG TCCAACAAGT GCTAAATCAT CAAAAAAGAT 6193 .......... .......... .......... .......... .......... .......... 401 GGGAACATTT GCAGTGTATG TAGGGGAAGA AAGGGAGCGA TTCGCGGTGC CAACGAGCTA 6253 .......... .......... .......... .......... .......... .......... 401 TCTTTCACAT CCATTGTTCA AGATTTTGTT GGAGAAGACA TATAATGAGT TTGGTTTTGA 6313 .......... .......... .......... .......... .......... .......... 401 GCAAACAAAT GGACTTGTGG TTCCATGTAG TGTTGCTGCA TTTCAAGAAG TGGTCAATGC 6373 .......... .......... .......... .......... .......... .......... 401 TGTGGAGTGT TGCAATGGGA AGTTTGATTT TGGTGGCTTG GTTGAGGAAT TTCTATAATT 6433 .......... .......... .......... .......... .......... .......... 401 AGGTCTATAT TATTCAAGGT CTTATATATT CACAACTACG TACAACGTTT CAGTCTCGAA 6493 .......... .......... .......... .......... .......... .......... 401 CAAGTTGGAA TCAATTACTT TTCTAACTAG AGTGAAAAAA TAGCATTTGG TGAAATAGAT 6553 .......... .......... .......... .......... .......... .......... 401 TTTAAAAGGA TTAAATCATA TATTAAGGAG GTAATTTACA ATTTAAAGTC TTAGTTACTT 6613 .......... .......... .......... .......... .......... .......... 401 TTGTACCAAA GAGATAGTGT AAATTATTAC ACCTTTAATA TCATAG 6659 | | |||| || || ||| | || || .......... .......TAC GATTTATAAC ACTATTAGAA ACAAAG 430 hqPGS_C09HBa0168F14.1-2+_SGN-E374998- (4399 4766,5198 5228) ******************************************************************************** EST sequence 245 -strand 660 n (File: SGN-E349296-) 1 AATATTATCA ATACATATTA TTCGCTATTA AGAGCTTACT ACGAATATCG TAAGAGAAAC 61 CATAACCTAC CTCCACCGAA GATTCGTGAT CAAGCAAGTG ATTTCCCAAG CTTTGTGTTT 121 TTTCCTCTCG TTCGATCCTC TTTCTCGTTC GACTTTCTCT CTCTTTCTCT TGTTCTTTCT 181 ATTTTCTTTA TTCAAACCCT CTTTCTTTTA CCCTAATTAG TATATAATTA AGAATAAAAT 241 ATGGCAATAA TAACCCACTA ATTAACTTAA GGTTACCTCT TTTAACCCCC AAGTAATTAG 301 ACTTATTAAC ATTAACCCAC TAACTTTATA ATTAAAGCAG GAATAGTCAA AAACGTCCCT 361 TAAAACAATT GAGGAATTCC GACTCAGACT GGGATTTACG CAGCCTGTGA CAGCCCGTTG 421 TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC GCAAGGTTCA GAGACTGGAT TTTCACTGAA 481 GACTCTGTGA TGGTCCATCA CGCCTGTGAC GGTCCGTCTT GCCATTCCGT TACGAAGTTC 541 AGAGAGTCGA TTTTCAGTAC CCAATTTCAG ATTTCCTAAG TGTTTTGAAA TGAGACCCTG 601 CGACGGTCCG TCGTGCCCAT GATGGTCCGT CGTGGGGTCC GTCATTTCTG CCAGTTTTTC Predicted gene structure (within gDNA segment 1947 to 6279): Exon 1 4069 4717 ( 649 n); cDNA 1 660 ( 660 n); score: 0.818 MATCH C09HBa0168F14.1-2+ SGN-E349296- 0.818 649 0.983 C PGS_C09HBa0168F14.1-2+_SGN-E349296- (4069 4717) Alignment (genomic DNA sequence = upper lines): AATACAACCC AACACATATC ATTCGCTATC AAGAGTTAAC TACGAATA-- GTA-TA-AAA 4124 |||| | | || |||||| ||||||||| ||||| | || |||||||| ||| | ||| AATATTA-TC AATACATATT ATTCGCTATT AAGAGCTTAC TACGAATATC GTAAGAGAAA 59 CCATAACCTA CCTCCACCGA AGAATTTCGA TCAAGCAAGC AATTTCCCAA GCCTT-T-TT 4182 |||||||||| |||||||||| ||| | || ||||||||| ||||||||| || || | || CCATAACCTA CCTCCACCGA AGATTCGTGA TCAAGCAAGT GATTTCCCAA GCTTTGTGTT 119 CGTT-TTCTC GTT-TCTCCT CTTTGTCG-T CGATCCTCTC TCTCTCT-TC TTGTTCTTTC 4238 || |||| ||| |||| |||| ||| | ||| |||| ||||| | || |||||||||| TTTTCCTCTC GTTCGATCCT CTTTCTCGTT CGACTTTCTC TCTCTTTCTC TTGTTCTTTC 179 TATTTTCTTT ATTCAAATCC TCTTTCTTTT ACCCTAATTA GCATATAATT AAGAATAAAA 4298 |||||||||| ||||||| || |||||||||| |||||||||| | |||||||| |||||||||| TATTTTCTTT ATTCAAACCC TCTTTCTTTT ACCCTAATTA GTATATAATT AAGAATAAAA 239 GATGGCAATA ATAACTCACT AGTTTACTCA AGGTTACCTC TTTTAGCCCC CAAGTAATT- 4357 ||||||||| ||||| |||| | || ||| | |||||||||| ||||| |||| ||||||||| TATGGCAATA ATAACCCACT AATTAACTTA AGGTTACCTC TTTTAACCCC CAAGTAATTA 299 GAGTTATTAA TATTAAACCA CTAACTTTAT AATTATAAGT CGGAATAGTC AAAAACGTCC 4417 || ||||||| ||||| ||| |||||||||| ||||| ||| ||||||||| |||||||||| GACTTATTAA CATTAACCCA CTAACTTTAT AATTA-AAGC AGGAATAGTC AAAAACGTCC 358 CTTAAAA-TA TTAAAGAAAT CCGACTCCGC CTGGGA-TTA CGCAGCCTGT GACGGGCCGT 4475 ||||||| | || | ||| | ||||||| | |||||| ||| |||||||||| ||| | |||| CTTAAAACAA TTGAGGAATT CCGACTCAGA CTGGGATTTA CGCAGCCTGT GACAGCCCGT 418 CGTGCCTGCG ACGGTCCGTC CTGCTGCTCC GTCACAGAGT TCAGAGACT- CA-ATTCTCT 4533 ||||||||| |||||||||| |||| | | | ||| || || ||||||||| | ||| || TGTGCCTGCG ACGGTCCGTC CTGCAGGT-C GTCGCAAGGT TCAGAGACTG GATTTTCACT 477 GAAGAGTCTG TGACAGTCCG TCACGCCTGT GACGGTCCAT CCTGCCATTC CGTTACGAAG 4593 ||||| |||| ||| |||| |||||||||| |||||||| | | |||||||| |||||||||| GAAGACTCTG TGATGGTCCA TCACGCCTGT GACGGTCCGT CTTGCCATTC CGTTACGAAG 537 TTCAGAGAGT CGA-TTTCAG TACCCATTTT TCAGAATTTC TAAGTGTTTT GAAACGAGAC 4652 |||||||||| ||| |||||| |||||| || ||||| || | |||||||||| |||| ||||| TTCAGAGAGT CGATTTTCAG TACCCA-ATT TCAGATTTCC TAAGTGTTTT GAAATGAGAC 596 ACTCTCGACG GTCCGTCGTG CCCATGACGG TCCGTCGTGG GTTCCGTCAT CTCAGCCTGT 4712 || ||||| |||||||||| ||||||| || |||||||||| | |||||||| || ||| || CCT-GCGACG GTCCGTCGTG CCCATGATGG TCCGTCGTGG GGTCCGTCAT TTCTGCCAGT 655 TTTTC 4717 ||||| TTTTC 660 hqPGS_C09HBa0168F14.1-2+_SGN-E349296- (4069 4717) ******************************************************************************** EST sequence 29 +strand 720 n (File: SGN-E389834+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTA CGTCGACTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAGAACGAC 541 TAAACAGGAC GTTACATTTA TGATCGTCCT ACTTAAATAT CATTATTATT TTACGATTTA 601 TAACACTATT AGAAACGAAG ATTTTCTCGA CCATGAATTA ATGAAAAAAT ATGCCATGAA 661 ATATAAAAAT TTACTCGTTC TTCATTGAGC TATTCGTGAA AAAAAAAAAA AAATCGAGGG Predicted gene structure (within gDNA segment 3112 to 7992): Exon 1 4206 4771 ( 566 n); cDNA 2 564 ( 563 n); score: 0.863 PPA cDNA 699 714 MATCH C09HBa0168F14.1-2+ SGN-E389834+ 0.863 566 0.786 C PGS_C09HBa0168F14.1-2+_SGN-E389834+ (4206 4771) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| ||||| |||| |||| ||| ||||||| | |||||||||| |||| |||| GGTCCGTCGT GGGTTACGTC GACTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAG 534 AATGACTAAA CAGGTCGTTA CATTTAATAA T 4771 || ||||||| |||| ||||| ||||| || | | AACGACTAAA CAGGACGTTA CATTT-ATGA T 564 hqPGS_C09HBa0168F14.1-2+_SGN-E389834+ (4206 4771) ******************************************************************************** EST sequence 58 +strand 649 n (File: SGN-E374999+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CCAAACGACT 541 AAACAGGTCG TTACATTTAT GTTCTTCCTA CTTAAATATT ATTATTATTT TACGATTTAT 601 AACACTATTA GAAACAAAGA TTTTCTTCAC CCTGAATTAA TGAAAAAAT Predicted gene structure (within gDNA segment 3122 to 7292): Exon 1 4206 4766 ( 561 n); cDNA 1 559 ( 559 n); score: 0.871 MATCH C09HBa0168F14.1-2+ SGN-E374999+ 0.871 561 0.864 C PGS_C09HBa0168F14.1-2+_SGN-E374999+ (4206 4766) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 473 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||| | GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCCA 533 AATGACTAAA CAGGTCGTTA CATTTA 4766 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA 559 hqPGS_C09HBa0168F14.1-2+_SGN-E374999+ (4206 4766) ******************************************************************************** EST sequence 61 +strand 618 n (File: SGN-E396054+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCTTCCT ACTTAAATAT TATTATTATT TTACGATTTA 601 TAACACTATT AGAAACAA Predicted gene structure (within gDNA segment 3112 to 6972): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 MATCH C09HBa0168F14.1-2+ SGN-E396054+ 0.873 561 0.908 C PGS_C09HBa0168F14.1-2+_SGN-E396054+ (4206 4766) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTA 4766 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA 560 hqPGS_C09HBa0168F14.1-2+_SGN-E396054+ (4206 4766) ******************************************************************************** EST sequence 63 +strand 610 n (File: SGN-E396058+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTGTTT CCAAAAATAA AATCTGCTAC TCACAACGAC 541 TAAACAGGTC GTTACATTTA GGTTCTTCAT AGTTAACTAT TATTATTATT TTACGATTTA 601 TAACACTATT Predicted gene structure (within gDNA segment 3112 to 6892): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.869 MATCH C09HBa0168F14.1-2+ SGN-E396058+ 0.869 561 0.920 C PGS_C09HBa0168F14.1-2+_SGN-E396058+ (4206 4766) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| || |||| | |||||||||| |||| |||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTGTTTCCAA AAATAAAATC TGCTACTCAC 534 AATGACTAAA CAGGTCGTTA CATTTA 4766 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA 560 hqPGS_C09HBa0168F14.1-2+_SGN-E396058+ (4206 4766) ******************************************************************************** EST sequence 149 -strand 681 n (File: SGN-E389553-) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCCAATTTCA 421 GAATTTCTAA GTGTTTTGAA ACGAGACTCC TCGACGGTCC ATCGTGCTCA TGACGGTCCG 481 TCGTGGGTTC CGTCGTCTCA ACCTGTTTTT CCAAAAATAA AATCTGCTAC TCAAAACGAC 541 TAAACAGGTC GTTACATTTA TGTTCGTTCC TACTTAAATA TTATTATTAT TTTACGATTT 601 ATAACACTAT TAGAAACAAA GATTTTCTCA ACCATGAATT AATGAAAAAA TTATGGAATA 661 AAATATAAAA AATTACTCAT T Predicted gene structure (within gDNA segment 3102 to 7592): Exon 1 4206 4766 ( 561 n); cDNA 2 560 ( 559 n); score: 0.873 MATCH C09HBa0168F14.1-2+ SGN-E389553- 0.873 561 0.824 C PGS_C09HBa0168F14.1-2+_SGN-E389553- (4206 4766) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 474 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 534 AATGACTAAA CAGGTCGTTA CATTTA 4766 || ||||||| |||||||||| |||||| AACGACTAAA CAGGTCGTTA CATTTA 560 hqPGS_C09HBa0168F14.1-2+_SGN-E389553- (4206 4766) ******************************************************************************** EST sequence 39 +strand 558 n (File: SGN-E231589+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA TAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACAGGTCG TTACATTT Predicted gene structure (within gDNA segment 3122 to 6382): Exon 1 4206 4765 ( 560 n); cDNA 1 558 ( 558 n); score: 0.871 MATCH C09HBa0168F14.1-2+ SGN-E231589+ 0.871 560 1.004 C PGS_C09HBa0168F14.1-2+_SGN-E231589+ (4206 4765) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || ||||| |||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCATAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 473 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 533 AATGACTAAA CAGGTCGTTA CATTT 4765 || ||||||| |||||||||| ||||| AACGACTAAA CAGGTCGTTA CATTT 558 hqPGS_C09HBa0168F14.1-2+_SGN-E231589+ (4206 4765) ******************************************************************************** EST sequence 109 +strand 545 n (File: SGN-E241959+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GACGGTCCGT 481 CGTGGGTTCC GTCGTCTCAA CCTGTTTTTC CAAAAATAAA ATCTGCTACT CAAAACGACT 541 AAACA Predicted gene structure (within gDNA segment 3122 to 6252): Exon 1 4206 4752 ( 547 n); cDNA 1 545 ( 545 n); score: 0.869 MATCH C09HBa0168F14.1-2+ SGN-E241959+ 0.869 547 1.004 C PGS_C09HBa0168F14.1-2+_SGN-E241959+ (4206 4752) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGAC 4680 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| |||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGAC 473 GGTCCGTCGT GGGTTCCGTC ATCTCAGCCT GTTTTTCTAT AAATAAAATC TGCTGCTCAA 4740 |||||||||| |||||||||| ||||| ||| ||||||| | |||||||||| |||| ||||| GGTCCGTCGT GGGTTCCGTC GTCTCAACCT GTTTTTCCAA AAATAAAATC TGCTACTCAA 533 AATGACTAAA CA 4752 || ||||||| || AACGACTAAA CA 545 hqPGS_C09HBa0168F14.1-2+_SGN-E241959+ (4206 4752) ******************************************************************************** EST sequence 65 +strand 472 n (File: SGN-E236652+) 1 TCGATTCTCC TTCTCTCTCT TTCTGTTCTT TTCTTTTTCT TATTCAAACC CTCCTTCTTT 61 TACCCTAATT AGCATATAAT TAAGAATAAA AGATGGAATA ATAACCCACT AATTTACTCA 121 AGGTTACCTC TTTTAACCCC CAGGTAATTA GACTTATTAA CATAAACCCA CTAACTTTAT 181 AATTAAAGTA GGAATAGTCC AAAACGTCCC TTAAAACGTG TAAAGAAATC CGACCCAGAC 241 TGGGATTACG CAACCTGTGA TGGCCCGTCG TGCCTGCGAC GGTCCGTCCT GCAGGTCGTC 301 GCAAGGTTCA GAGACTCAAT TTCCACCAAA GAGTCTGTGA CGGTCCGTCA CGCCCGTGAC 361 GGTCCGTCGT GCCATTCCGT TACGAAGTTC AGAGAGTCGA TTTTTAGTAC CCAATTTCAG 421 AATTTCTAAG TGTTTTGAAA CGAGACTCCT CGACGGTCCA TCGTGCTCAT GA Predicted gene structure (within gDNA segment 3122 to 5522): Exon 1 4206 4679 ( 474 n); cDNA 1 472 ( 472 n); score: 0.862 MATCH C09HBa0168F14.1-2+ SGN-E236652+ 0.862 474 1.004 C PGS_C09HBa0168F14.1-2+_SGN-E236652+ (4206 4679) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 58 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 117 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 177 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 236 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 296 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 355 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||||||| GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTACCCA-A 414 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA CGGTCCGTCG TGCCCATGA 4679 |||||||||| |||||||||| |||||||||| || | ||||| |||||| ||| ||| ||||| TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACTC-CTCGA CGGTCCATCG TGCTCATGA 472 hqPGS_C09HBa0168F14.1-2+_SGN-E236652+ (4206 4679) ******************************************************************************** EST sequence 64 +strand 454 n (File: SGN-E396070+) 1 ATCGATTCTC CTTCTCTCTC TTTCTGTTCT TTTCTTTTTC TTATTCAAAC CCTCCTTCTT 61 TTACCCTAAT TAGCATATAA TTAAGAATAA AAGATGGAAT AATAACCCAC TAATTTACTC 121 AAGGTTACCT CTTTTAACCC CCAGGTAATT AGACTTATTA ACATAAACCC ACTAACTTTA 181 TAATTAAAGT AGGAATAGTC CAAAACGTCC CTTAAAACGT GTAAAGAAAT CCGACCCAGA 241 CTGGGATTAC GCAACCTGTG ATGGCCCGTC GTGCCTGCGA CGGTCCGTCC TGCAGGTCGT 301 CGCAAGGTTC AGAGACTCAA TTTCCACCAA AGAGTCTGTG ACGGTCCGTC ACGCCCGTGA 361 CGGTCCGTCG TGCCATTCCG TTACGAAGTT CAGAGAGTCG ATTTTTAGTA CCGGGGGGGG 421 GAGTTTCTAA TTGTTTTGAA ACTAGACTCC TCGA Predicted gene structure (within gDNA segment 3112 to 5719): Exon 1 4206 4660 ( 455 n); cDNA 2 454 ( 453 n); score: 0.838 MATCH C09HBa0168F14.1-2+ SGN-E396070+ 0.838 455 1.002 C PGS_C09HBa0168F14.1-2+_SGN-E396070+ (4206 4660) Alignment (genomic DNA sequence = upper lines): TCGTCGATCC TCTCTCTCTC TTCTTGTTCT TTCTATTTTC TTTATTCAAA TCCTCTTTCT 4265 ||| ||| | |||||||| || |||||| || | |||| ||||||||| |||| |||| TCGATTCTCC T-TCTCTCTC TTTCTGTTCT TT-TCTTTTT CTTATTCAAA CCCTCCTTCT 59 TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGGCA ATAATAACTC ACTAGTTTAC 4325 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | |||| ||||| TTTACCCTAA TTAGCATATA ATTAAGAATA AAAGATGG-A ATAATAACCC ACTAATTTAC 118 TCAAGGTTAC CTCTTTTAGC CCCCAAGTAA TT-GAGTTAT TAATATTAAA CCACTAACTT 4384 |||||||||| |||||||| | ||||| |||| || || |||| ||| || || |||||||||| TCAAGGTTAC CTCTTTTAAC CCCCAGGTAA TTAGACTTAT TAACATAAAC CCACTAACTT 178 TATAATTATA AGTCGGAATA GTCAAAAACG TCCCTTAAAA TAT-TAAAGA AATCCGACTC 4443 |||||||| | ||| |||||| ||| |||||| |||||||||| | |||||| |||||||| | TATAATTA-A AGTAGGAATA GTCCAAAACG TCCCTTAAAA CGTGTAAAGA AATCCGACCC 237 CGCCTGGGAT TACGCAGCCT GTGACGGGCC GTCGTGCCTG CGACGGTCCG TCCTGCTGCT 4503 | ||||||| |||||| ||| |||| || || |||||||||| |||||||||| |||||| | | AGACTGGGAT TACGCAACCT GTGATGGCCC GTCGTGCCTG CGACGGTCCG TCCTGCAGGT 297 CCGTCACAGA GTTCAGAGAC TCAA-TT-CT CTGAAGAGTC TGTGACAGTC CGTCACGCCT 4561 |||| || |||||||||| |||| || | | ||||||| |||||| ||| ||||||||| -CGTCGCAAG GTTCAGAGAC TCAATTTCCA CCAAAGAGTC TGTGACGGTC CGTCACGCCC 356 GTGACGGTCC ATCCTGCCAT TCCGTTACGA AGTTCAGAGA GTCGA-TTTC AGTACCCATT 4620 |||||||||| || |||||| |||||||||| |||||||||| ||||| ||| |||| || GTGACGGTCC GTCGTGCCAT TCCGTTACGA AGTTCAGAGA GTCGATTTTT AGTA-CCGGG 415 TTTCAGAATT TCTAAGTGTT TTGAAACGAG ACACTCTCGA 4660 || || ||||| |||| ||||||| || || | ||||| GGGGGGAGTT TCTAATTGTT TTGAAACTAG ACTC-CTCGA 454 hqPGS_C09HBa0168F14.1-2+_SGN-E396070+ (4206 4660) ******************************************************************************** EST sequence 176 +strand 707 n (File: SGN-E353825+) 1 GATTTTGTAA TTTGAAGTTT ATGGATTCGG AATCAACGAG AGGATCACAA GTTGTGAAAT 61 TGCAGTTGAA TAAACAAGAG ACTGATCACA TTCTTGATGG CTGTAAAACG AGAGGTATAA 121 AACTGTGTGG ACTATTGGCT GCTGCTGGAT TAATTGCAGC TCATTCCTTA AAAGGCCTAA 181 AGGAGAATCA ATGGGAGAAG TATGCAATTG TAACCCTTAT TAACTGCCGT TCAATTCTTG 241 ATCCAGTGCT TAGCCCTGAT TTTCCAGGCT TTTATCATTC TGCCATCCTC AACACGCATG 301 ACGTTAAGGG AGGAGATGAC TTATGGGAGC TAGCAAAGAG AAGTTACACA TCTTTTATCA 361 ACGCCAAGAA CAATAACAAG CATTTCACAG ACATGGGAGA CCTGAATTTC CTCATGTGCA 421 GGGCCATTGA TAATCCCGGC TTAACTCCAT CCTCTTCACT TAGAACTTCT CTGATCTCCG 481 TGTTTGAAGA CACTGTGATC GATACCTCCA GCACAATGCA TCAAGAAATC GGATTAGAAG 541 ACTTCATCGG GTGTGCATCC GTGCATGGGG TANGCCCTTC TATTTGCATA TTCGACACAA 601 TCAGGNACGG ACATTTGGAT TGTGCATGTG TTTATCCCTT CCCCTGCATA CTAGAGAGCA 661 ATACAGGAGC TCATTGGTGA AATGAAAAAA ATCCTATTGA CTGCTAG Predicted gene structure (within gDNA segment 12120 to 6902): Exon 1 11520 11423 ( 98 n); cDNA 1 98 ( 98 n); score: 1.000 Intron 1 11422 9597 (1826 n); Pd: 0.987 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 9596 9428 ( 169 n); cDNA 99 267 ( 169 n); score: 1.000 Intron 2 9427 8062 (1366 n); Pd: 0.997 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 8061 7619 ( 443 n); cDNA 268 707 ( 440 n); score: 0.984 MATCH C09HBa0168F14.1-2- SGN-E353825+ 0.990 710 1.004 C PGS_C09HBa0168F14.1-2-_SGN-E353825+ (11520 11423,9596 9428,8061 7619) Alignment (genomic DNA sequence = upper lines): GATTTTGTAA TTTGAAGTTT ATGGATTCGG AATCAACGAG AGGATCACAA GTTGTGAAAT 11461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTGTAA TTTGAAGTTT ATGGATTCGG AATCAACGAG AGGATCACAA GTTGTGAAAT 60 TGCAGTTGAA TAAACAAGAG ACTGATCACA TTCTTGATGT AAGTTCTTCG CATTTTAGTA 11401 |||||||||| |||||||||| |||||||||| |||||||| TGCAGTTGAA TAAACAAGAG ACTGATCACA TTCTTGAT.. .......... .......... 98 AATTTCTTAC CTTTTTACGC ATCTCGATTA ATTTCATTTT ATTTATGATT TTGTTCATCG 11341 .......... .......... .......... .......... .......... .......... 98 AGACTTGATT AGATAAGAAG AAATCACATA GCACTTGTTA AGTCTTTGAT AGTTTTTTTT 11281 .......... .......... .......... .......... .......... .......... 98 GACAACACAT TAATTTTAAA CTTTTGCGCT TATTTCTTTT TTTTATAAAT TTTATGTTTA 11221 .......... .......... .......... .......... .......... .......... 98 TTAAGGCTTG ATTAGATAAG AAGAGATCAC ATACTCACTC GTTTCAATTT GTTTATTTTG 11161 .......... .......... .......... .......... .......... .......... 98 TTATCTTTTT AGTCGTTTCA AATAAGAACG ACTCTTTTTT CTTTTTTGGT TGACCTCTCA 11101 .......... .......... .......... .......... .......... .......... 98 TTAATTTTAT TTTTCATGTG ATATGTTTAC TCACAAGATT AAAAGTTATT TTGATATATT 11041 .......... .......... .......... .......... .......... .......... 98 TTATATATCT TTAATTTAAA ATGATAGGAA TCGATTTCTA AAACTATATT TTAAATTATA 10981 .......... .......... .......... .......... .......... .......... 98 ATCAGATAAA TAAATTGAAA CGGGAATAGT GTTTTTCTTA AGCTTCCTTA ATTTAGAGCA 10921 .......... .......... .......... .......... .......... .......... 98 AGATAGTGAT ATTCCTTTTT TTCTCTTTCA ATAAATTTAA TTGTCAGTGT GTTAAATATA 10861 .......... .......... .......... .......... .......... .......... 98 TATTTGATAA TTGATAGAGA AACACTAATG TTTTACAAAC TTAAAGAATT TAAAACTTTT 10801 .......... .......... .......... .......... .......... .......... 98 AAAATACTAT ATTTAAGGAA GTATGTTAAG CCTATCTAAA TTAAAAGGAT TATTTTTGTC 10741 .......... .......... .......... .......... .......... .......... 98 ATTTTCTCGA TGTATGGTGT GTTGTCTTTA ATCATATATT TTTCTGACTT TATCATAATT 10681 .......... .......... .......... .......... .......... .......... 98 AATTATAATT TCCTTAGTAT TATTTGATAA TGTATATTTT TCTCACTTAA TCATAAATTA 10621 .......... .......... .......... .......... .......... .......... 98 ATTATAATAT CCTTAGTGGT ATATTAAAAA TATGAAAATA GATATTATGG TTGAAATTTA 10561 .......... .......... .......... .......... .......... .......... 98 AGTGGAGACA ATACATTAGA TGATTCAAAT TTCTTTCTCT AGTATTGAAA TCGAATTGGC 10501 .......... .......... .......... .......... .......... .......... 98 AGAAAGTACC GAAAGTCGGC CTCCCGCCCT ATCATCCCGT GTCTCAACCA ATTTTTTTCT 10441 .......... .......... .......... .......... .......... .......... 98 TGTCTCCAAA TCTCTCTTTT GGCTTTTGAA ACTTTGATTC GGTGCCTAAA TTTTGATCGA 10381 .......... .......... .......... .......... .......... .......... 98 TAAAGTTATC TGGTATTTAC CTAGATGGCA AATAGTAGGT ATCTAATTGA TAACGTTTGC 10321 .......... .......... .......... .......... .......... .......... 98 AAACTGAGTT GAACATCATC GTCATACAAA AATAGATTTA AATGTCATTT TCAAATTGTC 10261 .......... .......... .......... .......... .......... .......... 98 AAGTTAGGTT GACATTTTAT TTTCATTTTC TTTAGAAATT AGGCAAAGCT ACTCTATGAA 10201 .......... .......... .......... .......... .......... .......... 98 AACTTGCTTG GCCCAATTTT CTTTTTTAGG TTAGTCTCAT TTATGGCCCT CATTGAATAT 10141 .......... .......... .......... .......... .......... .......... 98 TCTCTTCACA TGATGTCCAA CTTTAATCAT ATTTGAATTG TGAATTGGCC AATTTGCATG 10081 .......... .......... .......... .......... .......... .......... 98 CTACATCTTT CACATGACTA GAATCTGGCC TGATTGTGAG TAATGATATT ACTAATTTTT 10021 .......... .......... .......... .......... .......... .......... 98 CTAAAAATAA CTCGTGGTGT TCGGGTCGAC TAGTGGTTAC CTCAGTACTT TCCATCTGCA 9961 .......... .......... .......... .......... .......... .......... 98 TGTGTATCAA GCAACTCTGT TCACCGAGAA TGGTATAAAC TAATACCGTT AAATCAAAAG 9901 .......... .......... .......... .......... .......... .......... 98 ATCCAATTCG GCTCAACTAA GATCAGGTTT ATAGCCTGAT TAATGGTTTA AATTTTATAC 9841 .......... .......... .......... .......... .......... .......... 98 ATCGACAGTG CAAGATCACA TTATTTAGAA GTTAGTTGTA TGTAACTGCC TGTGATAAGT 9781 .......... .......... .......... .......... .......... .......... 98 GTGTGCGACA CTACAAAAAT GTTGTTCGCC AATGTCAAAT CTTCAAAAAT TACATTACTT 9721 .......... .......... .......... .......... .......... .......... 98 TATCCGAATG CACCTGAAAA ACATTTTTGA AGAGTCTGAG CAACAGGTTA CGACTCCCTA 9661 .......... .......... .......... .......... .......... .......... 98 TCTAAATGTA CATTGTTTGC ACTTTAGAGC ATTAGAGGTA GTAACAAAAT CTGAATTTTG 9601 .......... .......... .......... .......... .......... .......... 98 GTAGGGCTGT AAAACGAGAG GTATAAAACT GTGTGGACTA TTGGCTGCTG CTGGATTAAT 9541 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GGCTGT AAAACGAGAG GTATAAAACT GTGTGGACTA TTGGCTGCTG CTGGATTAAT 154 TGCAGCTCAT TCCTTAAAAG GCCTAAAGGA GAATCAATGG GAGAAGTATG CAATTGTAAC 9481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTCAT TCCTTAAAAG GCCTAAAGGA GAATCAATGG GAGAAGTATG CAATTGTAAC 214 CCTTATTAAC TGCCGTTCAA TTCTTGATCC AGTGCTTAGC CCTGATTTTC CAGGTTCGTT 9421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CCTTATTAAC TGCCGTTCAA TTCTTGATCC AGTGCTTAGC CCTGATTTTC CAG....... 267 AATGCATTCA TGGTAAAAAC TTACTTGTAT CGGGTCTTTA TATTTCTTGT ACCGAGGCCT 9361 .......... .......... .......... .......... .......... .......... 267 CCACTCTTGA CACCCATCTA ACCCCATTGG TTACTACTGT CTACTGGTAT CCGATCTTTT 9301 .......... .......... .......... .......... .......... .......... 267 TTTTCTTCTT TTTGGACCCA AGTTAATAAT AAATGGTACC GCTACTGATG TTCTACCAGT 9241 .......... .......... .......... .......... .......... .......... 267 TGGTCAAGGC TAGTACACTC TTAGGTCCAG GTAACTACTC CCAATTGATC AAGGCTAGTA 9181 .......... .......... .......... .......... .......... .......... 267 CACATGACAG ACTCTAGAAC CCCCTCTTTG ATTTTCGTGC TCAAGCGTTG CTTTGATAGT 9121 .......... .......... .......... .......... .......... .......... 267 AATTGTTATA GACTAAATAG AAAACCTCAG CCTATTAAGG GAGGGAGAAC CTGTCAATCT 9061 .......... .......... .......... .......... .......... .......... 267 ATAAACTCAT ACGTACACTC AATCGGGAGT CAAGTATTGG TTTGCAAGGA TTCCTTTTAA 9001 .......... .......... .......... .......... .......... .......... 267 GGTAAATAAT AGAGTTGCTA TATGTGACTT GCAAGTTCGT TGCCCATTAT CTATGTACTT 8941 .......... .......... .......... .......... .......... .......... 267 GGAAAAGCTC AAATTACCCT TAGTCTGCTG GAAACATCCT ATTAGCCCTT TTAACTTGAG 8881 .......... .......... .......... .......... .......... .......... 267 CAAGTACACC ATACTTCAGT AGTCAGTACC ATGTGATTGT TCTTACATTT GATGTAACTC 8821 .......... .......... .......... .......... .......... .......... 267 TCACTTCTGT TCAGCTTTTT CTTTTCATTG CTATTGTTGT ATCTTATCAG CCTTTCTCGA 8761 .......... .......... .......... .......... .......... .......... 267 GTCTTAAAAC TCCGACTTCT AAACTCAAAA CTGGTTTGAA ATGCCCATTT TGAGCTGGTT 8701 .......... .......... .......... .......... .......... .......... 267 CAGGCTGATT GTTCCCGCTT ATCTAGATTT CACTAATTGT GAGCTTCTGT TATTTTGGTC 8641 .......... .......... .......... .......... .......... .......... 267 ATTTCGATTA CTGCATTGTG ATGTTTACTG AACAGAGCAT GTGAAATTAG GTCTTAGGCC 8581 .......... .......... .......... .......... .......... .......... 267 TAACTCACAC CCCAAAAGCT AGCTCAAAGG GAGGAGGATT GTTGTCATTC TTTAACACCC 8521 .......... .......... .......... .......... .......... .......... 267 CACCTCACGC CCAGTGCTTA GCATCTGGTG CGTGAGCAAT TTTTAATTTT GGGGCTTTGA 8461 .......... .......... .......... .......... .......... .......... 267 TACCATGTTT AATTAGGTCT TAAGCCTAAC TCACACCCCA AAAGCTAGCT CAAAGGGAGG 8401 .......... .......... .......... .......... .......... .......... 267 AGGATTGCCT AAGCCTTATA AAGAGTCCAC CCATCTCATT AATCACCGAT GTGGGACTTT 8341 .......... .......... .......... .......... .......... .......... 267 TGTCATTCTT TAACACCCCA CCTCACGCCC AGTGCGTGGA CAATTTTACG CCCAGTGCGT 8281 .......... .......... .......... .......... .......... .......... 267 GGACAATTTT AATTTTGGGG ACCACAACAT CGGGTGAGAC GGACCCAGCT CTGATACCAT 8221 .......... .......... .......... .......... .......... .......... 267 GTGAAATTAG GTCTTAGGCC TAACTCACAC CTCAAAAGCT AGCTCAAAGA GAGGAGGATT 8161 .......... .......... .......... .......... .......... .......... 267 GCCTAAGCCT TATAAAGAAT TCACCCATCT CATTAATCAT CGATGTGAGA CTTTTGTCAT 8101 .......... .......... .......... .......... .......... .......... 267 TCTTTAACAG AGCATATTAA AATGATCTAA ATCGTGCAGG CTTTTATCAT TCTGCCATCC 8041 | |||||||||| |||||||||| .......... .......... .......... .........G CTTTTATCAT TCTGCCATCC 288 TCAACACGCA TGACGTTAAG GGAGGAGATG ACTTATGGGA GCTAGCAAAG AGAAGTTACA 7981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACACGCA TGACGTTAAG GGAGGAGATG ACTTATGGGA GCTAGCAAAG AGAAGTTACA 348 CATCTTTTAT CAACGCCAAG AACAATAACA AGCATTTCAC AGACATGGGA GACCTGAATT 7921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTTTAT CAACGCCAAG AACAATAACA AGCATTTCAC AGACATGGGA GACCTGAATT 408 TCCTCATGTG CAGGGCCATT GATAATCCCG GCTTAACTCC ATCCTCTTCA CTTAGAACTT 7861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCATGTG CAGGGCCATT GATAATCCCG GCTTAACTCC ATCCTCTTCA CTTAGAACTT 468 CTCTGATCTC CGTGTTTGAA GACACTGTGA TCGATACCTC CAGCACAATG CATCAAGAAA 7801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGATCTC CGTGTTTGAA GACACTGTGA TCGATACCTC CAGCACAATG CATCAAGAAA 528 TCGGATTAGA AGACTTCATC GGGTGTGCAT CCGTGCATGG GGTAGGCCCT TCTATTGCCA 7741 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||| || TCGGATTAGA AGACTTCATC GGGTGTGCAT CCGTGCATGG GGTANGCCCT TCTATTTGCA 588 TATTCGACAC AATCAGGGAC GGACATTTGG ATTGTGCATG TGTTTATCCC TTCCCCTTGC 7681 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||| ||| TATTCGACAC AATCAGGNAC GGACATTTGG ATTGTGCATG TGTTTATCCC TTCCCC-TGC 647 ATACTAGAGA GCAAATACAG GAGCTCATTG GTGAAATGAA AAAAATCCTT ATTGACTGCT 7621 |||||||||| || ||||||| |||||||||| |||||||||| |||||||| | |||||||||| ATACTAGAGA GC-AATACAG GAGCTCATTG GTGAAATGAA AAAAATCC-T ATTGACTGCT 705 AG 7619 || AG 707 hqPGS_C09HBa0168F14.1-2-_SGN-E353825+ (11520 11423,9596 9428,8061 7619) ******************************************************************************** EST sequence 256 +strand 552 n (File: SGN-E249848+) 1 GCTGGTGAGT TGTGAGAAGG AAGAATGAAA AAGGACAGAA TTGGAAATAT TGAAAAAGAA 61 GGAGGTTGGT TTGGGGATTG AAAAATATAT TCCAGATGGT AAAGCGAGTA AACCATTTTG 121 GGCGCGTGGG ATTGATATGG TGGGGTATGG TTTGAATTCA TTGAGATTTT GTAATTTGAA 181 GTTTATGGAT TCGGAATCAA CGAGAGGATC ACAAGTTGTG AAATTGCAGT TGAATAAACA 241 AGAGACTGAT CACATTCTTG ATGGCTGTAA AACGAGAGGT ATAAAACTGT GTGGACTATT 301 GGCTGCTGCT GGATTAATTG CAGCTCATTC CTTAAAAAGC CTAAAGGAGA ATCAATGGGA 361 GAAGTATGCA ATTGTAACCC TTATTAACTG CCGTTCAATT CTTGATCCAG TGCTTAGCCC 421 TGATTTTCCA GGCTTTTATC ATTCTGCCAT CCTCAACACG CATGACGTTA AGGGAGGAGA 481 TGACTTATGG GAGCTAGCAA AAAGAAGTTA CACATCTTTT ATCAACGCCA AGAACAATAA 541 CAAGCATTTC AC Predicted gene structure (within gDNA segment 12284 to 7331): Exon 1 11684 11423 ( 262 n); cDNA 1 262 ( 262 n); score: 0.969 Intron 1 11422 9597 (1826 n); Pd: 0.987 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 9596 9428 ( 169 n); cDNA 263 431 ( 169 n); score: 0.994 Intron 2 9427 8062 (1366 n); Pd: 0.997 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 8061 7941 ( 121 n); cDNA 432 552 ( 121 n); score: 0.992 MATCH C09HBa0168F14.1-2- SGN-E249848+ 0.982 552 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E249848+ (11684 11423,9596 9428,8061 7941) Alignment (genomic DNA sequence = upper lines): GCTGGTGAGT TGTGAGAAGG AAGATGAAGA AGGGACAGAA TTGGAAATAT TGAAAAAGAT 11625 |||||||||| |||||||||| |||| | | | |||||||| |||||||||| ||||||||| GCTGGTGAGT TGTGAGAAGG AAGAATGAAA AAGGACAGAA TTGGAAATAT TGAAAAAGAA 60 GGAGGTTGGT TTGGGGATTG AAGAGTATAT TCCAGATGGT AAAGCGAGTA AACCATTTTG 11565 |||||||||| |||||||||| || | ||||| |||||||||| |||||||||| |||||||||| GGAGGTTGGT TTGGGGATTG AAAAATATAT TCCAGATGGT AAAGCGAGTA AACCATTTTG 120 GGCGCGTGGG ATTGATATGG TGGGGTATGG TTTGAATTCA TTGAGATTTT GTAATTTGAA 11505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGCGTGGG ATTGATATGG TGGGGTATGG TTTGAATTCA TTGAGATTTT GTAATTTGAA 180 GTTTATGGAT TCGGAATCAA CGAGAGGATC ACAAGTTGTG AAATTGCAGT TGAATAAACA 11445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTATGGAT TCGGAATCAA CGAGAGGATC ACAAGTTGTG AAATTGCAGT TGAATAAACA 240 AGAGACTGAT CACATTCTTG ATGTAAGTTC TTCGCATTTT AGTAAATTTC TTACCTTTTT 11385 |||||||||| |||||||||| || AGAGACTGAT CACATTCTTG AT........ .......... .......... .......... 262 ACGCATCTCG ATTAATTTCA TTTTATTTAT GATTTTGTTC ATCGAGACTT GATTAGATAA 11325 .......... .......... .......... .......... .......... .......... 262 GAAGAAATCA CATAGCACTT GTTAAGTCTT TGATAGTTTT TTTTGACAAC ACATTAATTT 11265 .......... .......... .......... .......... .......... .......... 262 TAAACTTTTG CGCTTATTTC TTTTTTTTAT AAATTTTATG TTTATTAAGG CTTGATTAGA 11205 .......... .......... .......... .......... .......... .......... 262 TAAGAAGAGA TCACATACTC ACTCGTTTCA ATTTGTTTAT TTTGTTATCT TTTTAGTCGT 11145 .......... .......... .......... .......... .......... .......... 262 TTCAAATAAG AACGACTCTT TTTTCTTTTT TGGTTGACCT CTCATTAATT TTATTTTTCA 11085 .......... .......... .......... .......... .......... .......... 262 TGTGATATGT TTACTCACAA GATTAAAAGT TATTTTGATA TATTTTATAT ATCTTTAATT 11025 .......... .......... .......... .......... .......... .......... 262 TAAAATGATA GGAATCGATT TCTAAAACTA TATTTTAAAT TATAATCAGA TAAATAAATT 10965 .......... .......... .......... .......... .......... .......... 262 GAAACGGGAA TAGTGTTTTT CTTAAGCTTC CTTAATTTAG AGCAAGATAG TGATATTCCT 10905 .......... .......... .......... .......... .......... .......... 262 TTTTTTCTCT TTCAATAAAT TTAATTGTCA GTGTGTTAAA TATATATTTG ATAATTGATA 10845 .......... .......... .......... .......... .......... .......... 262 GAGAAACACT AATGTTTTAC AAACTTAAAG AATTTAAAAC TTTTAAAATA CTATATTTAA 10785 .......... .......... .......... .......... .......... .......... 262 GGAAGTATGT TAAGCCTATC TAAATTAAAA GGATTATTTT TGTCATTTTC TCGATGTATG 10725 .......... .......... .......... .......... .......... .......... 262 GTGTGTTGTC TTTAATCATA TATTTTTCTG ACTTTATCAT AATTAATTAT AATTTCCTTA 10665 .......... .......... .......... .......... .......... .......... 262 GTATTATTTG ATAATGTATA TTTTTCTCAC TTAATCATAA ATTAATTATA ATATCCTTAG 10605 .......... .......... .......... .......... .......... .......... 262 TGGTATATTA AAAATATGAA AATAGATATT ATGGTTGAAA TTTAAGTGGA GACAATACAT 10545 .......... .......... .......... .......... .......... .......... 262 TAGATGATTC AAATTTCTTT CTCTAGTATT GAAATCGAAT TGGCAGAAAG TACCGAAAGT 10485 .......... .......... .......... .......... .......... .......... 262 CGGCCTCCCG CCCTATCATC CCGTGTCTCA ACCAATTTTT TTCTTGTCTC CAAATCTCTC 10425 .......... .......... .......... .......... .......... .......... 262 TTTTGGCTTT TGAAACTTTG ATTCGGTGCC TAAATTTTGA TCGATAAAGT TATCTGGTAT 10365 .......... .......... .......... .......... .......... .......... 262 TTACCTAGAT GGCAAATAGT AGGTATCTAA TTGATAACGT TTGCAAACTG AGTTGAACAT 10305 .......... .......... .......... .......... .......... .......... 262 CATCGTCATA CAAAAATAGA TTTAAATGTC ATTTTCAAAT TGTCAAGTTA GGTTGACATT 10245 .......... .......... .......... .......... .......... .......... 262 TTATTTTCAT TTTCTTTAGA AATTAGGCAA AGCTACTCTA TGAAAACTTG CTTGGCCCAA 10185 .......... .......... .......... .......... .......... .......... 262 TTTTCTTTTT TAGGTTAGTC TCATTTATGG CCCTCATTGA ATATTCTCTT CACATGATGT 10125 .......... .......... .......... .......... .......... .......... 262 CCAACTTTAA TCATATTTGA ATTGTGAATT GGCCAATTTG CATGCTACAT CTTTCACATG 10065 .......... .......... .......... .......... .......... .......... 262 ACTAGAATCT GGCCTGATTG TGAGTAATGA TATTACTAAT TTTTCTAAAA ATAACTCGTG 10005 .......... .......... .......... .......... .......... .......... 262 GTGTTCGGGT CGACTAGTGG TTACCTCAGT ACTTTCCATC TGCATGTGTA TCAAGCAACT 9945 .......... .......... .......... .......... .......... .......... 262 CTGTTCACCG AGAATGGTAT AAACTAATAC CGTTAAATCA AAAGATCCAA TTCGGCTCAA 9885 .......... .......... .......... .......... .......... .......... 262 CTAAGATCAG GTTTATAGCC TGATTAATGG TTTAAATTTT ATACATCGAC AGTGCAAGAT 9825 .......... .......... .......... .......... .......... .......... 262 CACATTATTT AGAAGTTAGT TGTATGTAAC TGCCTGTGAT AAGTGTGTGC GACACTACAA 9765 .......... .......... .......... .......... .......... .......... 262 AAATGTTGTT CGCCAATGTC AAATCTTCAA AAATTACATT ACTTTATCCG AATGCACCTG 9705 .......... .......... .......... .......... .......... .......... 262 AAAAACATTT TTGAAGAGTC TGAGCAACAG GTTACGACTC CCTATCTAAA TGTACATTGT 9645 .......... .......... .......... .......... .......... .......... 262 TTGCACTTTA GAGCATTAGA GGTAGTAACA AAATCTGAAT TTTGGTAGGG CTGTAAAACG 9585 || |||||||||| .......... .......... .......... .......... ........GG CTGTAAAACG 274 AGAGGTATAA AACTGTGTGG ACTATTGGCT GCTGCTGGAT TAATTGCAGC TCATTCCTTA 9525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGGTATAA AACTGTGTGG ACTATTGGCT GCTGCTGGAT TAATTGCAGC TCATTCCTTA 334 AAAGGCCTAA AGGAGAATCA ATGGGAGAAG TATGCAATTG TAACCCTTAT TAACTGCCGT 9465 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCCTAA AGGAGAATCA ATGGGAGAAG TATGCAATTG TAACCCTTAT TAACTGCCGT 394 TCAATTCTTG ATCCAGTGCT TAGCCCTGAT TTTCCAGGTT CGTTAATGCA TTCATGGTAA 9405 |||||||||| |||||||||| |||||||||| ||||||| TCAATTCTTG ATCCAGTGCT TAGCCCTGAT TTTCCAG... .......... .......... 431 AAACTTACTT GTATCGGGTC TTTATATTTC TTGTACCGAG GCCTCCACTC TTGACACCCA 9345 .......... .......... .......... .......... .......... .......... 431 TCTAACCCCA TTGGTTACTA CTGTCTACTG GTATCCGATC TTTTTTTTCT TCTTTTTGGA 9285 .......... .......... .......... .......... .......... .......... 431 CCCAAGTTAA TAATAAATGG TACCGCTACT GATGTTCTAC CAGTTGGTCA AGGCTAGTAC 9225 .......... .......... .......... .......... .......... .......... 431 ACTCTTAGGT CCAGGTAACT ACTCCCAATT GATCAAGGCT AGTACACATG ACAGACTCTA 9165 .......... .......... .......... .......... .......... .......... 431 GAACCCCCTC TTTGATTTTC GTGCTCAAGC GTTGCTTTGA TAGTAATTGT TATAGACTAA 9105 .......... .......... .......... .......... .......... .......... 431 ATAGAAAACC TCAGCCTATT AAGGGAGGGA GAACCTGTCA ATCTATAAAC TCATACGTAC 9045 .......... .......... .......... .......... .......... .......... 431 ACTCAATCGG GAGTCAAGTA TTGGTTTGCA AGGATTCCTT TTAAGGTAAA TAATAGAGTT 8985 .......... .......... .......... .......... .......... .......... 431 GCTATATGTG ACTTGCAAGT TCGTTGCCCA TTATCTATGT ACTTGGAAAA GCTCAAATTA 8925 .......... .......... .......... .......... .......... .......... 431 CCCTTAGTCT GCTGGAAACA TCCTATTAGC CCTTTTAACT TGAGCAAGTA CACCATACTT 8865 .......... .......... .......... .......... .......... .......... 431 CAGTAGTCAG TACCATGTGA TTGTTCTTAC ATTTGATGTA ACTCTCACTT CTGTTCAGCT 8805 .......... .......... .......... .......... .......... .......... 431 TTTTCTTTTC ATTGCTATTG TTGTATCTTA TCAGCCTTTC TCGAGTCTTA AAACTCCGAC 8745 .......... .......... .......... .......... .......... .......... 431 TTCTAAACTC AAAACTGGTT TGAAATGCCC ATTTTGAGCT GGTTCAGGCT GATTGTTCCC 8685 .......... .......... .......... .......... .......... .......... 431 GCTTATCTAG ATTTCACTAA TTGTGAGCTT CTGTTATTTT GGTCATTTCG ATTACTGCAT 8625 .......... .......... .......... .......... .......... .......... 431 TGTGATGTTT ACTGAACAGA GCATGTGAAA TTAGGTCTTA GGCCTAACTC ACACCCCAAA 8565 .......... .......... .......... .......... .......... .......... 431 AGCTAGCTCA AAGGGAGGAG GATTGTTGTC ATTCTTTAAC ACCCCACCTC ACGCCCAGTG 8505 .......... .......... .......... .......... .......... .......... 431 CTTAGCATCT GGTGCGTGAG CAATTTTTAA TTTTGGGGCT TTGATACCAT GTTTAATTAG 8445 .......... .......... .......... .......... .......... .......... 431 GTCTTAAGCC TAACTCACAC CCCAAAAGCT AGCTCAAAGG GAGGAGGATT GCCTAAGCCT 8385 .......... .......... .......... .......... .......... .......... 431 TATAAAGAGT CCACCCATCT CATTAATCAC CGATGTGGGA CTTTTGTCAT TCTTTAACAC 8325 .......... .......... .......... .......... .......... .......... 431 CCCACCTCAC GCCCAGTGCG TGGACAATTT TACGCCCAGT GCGTGGACAA TTTTAATTTT 8265 .......... .......... .......... .......... .......... .......... 431 GGGGACCACA ACATCGGGTG AGACGGACCC AGCTCTGATA CCATGTGAAA TTAGGTCTTA 8205 .......... .......... .......... .......... .......... .......... 431 GGCCTAACTC ACACCTCAAA AGCTAGCTCA AAGAGAGGAG GATTGCCTAA GCCTTATAAA 8145 .......... .......... .......... .......... .......... .......... 431 GAATTCACCC ATCTCATTAA TCATCGATGT GAGACTTTTG TCATTCTTTA ACAGAGCATA 8085 .......... .......... .......... .......... .......... .......... 431 TTAAAATGAT CTAAATCGTG CAGGCTTTTA TCATTCTGCC ATCCTCAACA CGCATGACGT 8025 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCTTTTA TCATTCTGCC ATCCTCAACA CGCATGACGT 468 TAAGGGAGGA GATGACTTAT GGGAGCTAGC AAAGAGAAGT TACACATCTT TTATCAACGC 7965 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TAAGGGAGGA GATGACTTAT GGGAGCTAGC AAAAAGAAGT TACACATCTT TTATCAACGC 528 CAAGAACAAT AACAAGCATT TCAC 7941 |||||||||| |||||||||| |||| CAAGAACAAT AACAAGCATT TCAC 552 hqPGS_C09HBa0168F14.1-2-_SGN-E249848+ (11684 11423,9596 9428,8061 7941) ******************************************************************************** EST sequence 215 +strand 418 n (File: SGN-E290904+) 1 CATTTCACAG ACATGGGAGA CCTGAATTTC CTCATGTGCA GGGCCATTGA TAATCCCGGC 61 TTAACTCCAT CCTCTTCACT TAGAACTTCT CTGATCTCCG TGTTTGAAGA CACTGAGATC 121 GATACCTCCA GCACAATGCA TCAAGAAATC GGATTACAAG ACTTCATCGG GTGTGCATTC 181 GCGCATGGGG GAGGCCCTTA TATTGCCATA TTCGACACAA TCAGGGACAG GACATTTGGA 241 TTGTGCATGC GTGAATCCCT TCCCCTTGCA TACTAGAGAG CAAATACAGG AGCTCATTGG 301 TGAAATGAAA AAAATCCTTA TTGACTGCTA GTATATTACT AAAACAAGAC ACTATATTCT 361 CCCACTCATC ATGTTCAATG AAAATGCAGT AAGTTGGTCG TTTTTGACAA ATGAAAAA Predicted gene structure (within gDNA segment 8548 to 6725): Exon 1 7948 7536 ( 413 n); cDNA 1 415 ( 415 n); score: 0.949 MATCH C09HBa0168F14.1-2- SGN-E290904+ 0.949 413 0.988 C PGS_C09HBa0168F14.1-2-_SGN-E290904+ (7948 7536) Alignment (genomic DNA sequence = upper lines): CATTTCACAG ACATGGGAGA CCTGAATTTC CTCATGTGCA GGGCCATTGA TAATCCCGGC 7889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTCACAG ACATGGGAGA CCTGAATTTC CTCATGTGCA GGGCCATTGA TAATCCCGGC 60 TTAACTCCAT CCTCTTCACT TAGAACTTCT CTGATCTCCG TGTTTGAAGA CACTGTGATC 7829 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTAACTCCAT CCTCTTCACT TAGAACTTCT CTGATCTCCG TGTTTGAAGA CACTGAGATC 120 GATACCTCCA GCACAATGCA TCAAGAAATC GGATTAGAAG ACTTCATCGG GTGTGCATCC 7769 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||| | GATACCTCCA GCACAATGCA TCAAGAAATC GGATTACAAG ACTTCATCGG GTGTGCATTC 180 GTGCATGGGG TAGGCCCTTC TATTGCCATA TTCGACACAA TCAGGGAC-G GACATTTGGA 7710 | |||||||| |||||||| |||||||||| |||||||||| |||||||| | |||||||||| GCGCATGGGG GAGGCCCTTA TATTGCCATA TTCGACACAA TCAGGGACAG GACATTTGGA 240 TTGTGCATGT GTTTATCCCT TCCCCTTGCA TACTAGAGAG CAAATACAGG AGCTCATTGG 7650 ||||||||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGCATGC GTGAATCCCT TCCCCTTGCA TACTAGAGAG CAAATACAGG AGCTCATTGG 300 TGAAATGAAA AAAATCCTTA TTGACTGCTA GTATATTACT AAAACAA-AC ACTATATTTT 7591 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||| | TGAAATGAAA AAAATCCTTA TTGACTGCTA GTATATTACT AAAACAAGAC ACTATATTCT 360 CCCACTCATC ATGTTCAATG AAAATGCAGT AAGTTGTTTG TTTTTGACAT CAAAA 7536 |||||||||| |||||||||| |||||||||| |||||| | | ||||||||| || CCCACTCATC ATGTTCAATG AAAATGCAGT AAGTTGGTCG TTTTTGACAA ATGAA 415 hqPGS_C09HBa0168F14.1-2-_SGN-E290904+ (7948 7536) ******************************************************************************** EST sequence 57 -strand 648 n (File: SGN-E542130-) 1 GAAGATGTCA TTTTTGTGGA TTTTAACCAA GAAGTTTGTA TTCATTGATT ATCTATCAGT 61 GACAAGAACC AAACATTGCA GAATATCTTC CAGTACATTG CATAAGTTTT AGCTTTTAGA 121 ACTTGTTGAA CAATTACTAT ATTTTTGCAG CTGCTTGCCC TTGTCCAAGA ACTACCTAAA 181 CATATGTCAC TTATATATGA TAATAAAGAT CAAATTAGAC GGAACTAGGG CTAGTATGTG 241 CGTAGCCAGT TATTTGCTAT TCTAAACTTC TTTGCATACC AGCACAATAA CTAACCCTTT 301 AAAGACCAAT GAAATGTACT TTGGACATAC ATGTTATAGA AAACACAAGC AGTAGAGATC 361 ATTCTAAAAA GAAGTATAGC CAGTTATGCC AACAATAAAG TAGATTCTGT TAAATTAGTT 421 CTTAGGCCTA ACTCACACCC CAAAAGCTAA GAGGAGTATT GCCCAAGCTT ATAAGGAGTT 481 CACCCATCTC AAACCACCGA TATGAGACTT TTGTCATTCT TTAACACCCC ACCTCTGCTT 541 AGTATCCCCA CCTCTGCTTA GCATCTGGTG CGTGGATAAT TTTGATTTAG AAGGAGCCAA 601 CCCATCTCAT TAATCGATGT GAATTTTTGT CATTCTTTAA CATTCAAC Predicted gene structure (within gDNA segment 13989 to 7666): Exon 1 12909 12872 ( 38 n); cDNA 371 405 ( 35 n); score: 0.579 Intron 1 12871 8606 (4266 n); Pd: 0.900 (s: 0), Pa: 0.993 (s: 0.89) Exon 2 8605 8560 ( 46 n); cDNA 406 449 ( 44 n); score: 0.891 Intron 2 8559 8406 ( 154 n); Pd: 0.000 (s: 0.89), Pa: 0.000 (s: 0.82) Exon 3 8405 8308 ( 98 n); cDNA 450 543 ( 94 n); score: 0.847 MATCH C09HBa0168F14.1-2- SGN-E542130- 0.847 182 0.281 C PGS_C09HBa0168F14.1-2-_SGN-E542130- (12909 12872,8605 8560,8405 8308) Alignment (genomic DNA sequence = upper lines): GACATTGGTG CTGTTATTGT CTAAAAACTA GAGCATATAT ATCCTCCACT CTAACGGAAG 12850 || | | ||||| | | || || || || | || GAAGTATAGC CAGTTAT-G- CCAACAA-TA AAGTAGAT.. .......... .......... 405 ACTAAATAGA GACACGTGAC ACAATCTTAT CTATTGATAA ATATCGAATC AGTAAATAAG 12790 .......... .......... .......... .......... .......... .......... 405 ATTATGACAC GTGTGTTAGG ATCGAATTCA TACATACACA CACTTGATGA ATAAATAACA 12730 .......... .......... .......... .......... .......... .......... 405 CAAGAACTTT AGAGAGAAAG AGATGAGAGA TCTAGAGAGA GAAAGAGAGA AGCCAATATT 12670 .......... .......... .......... .......... .......... .......... 405 TCGTGGTAAT ACTCCGTGAG TAAACTTCTA CGGCGTTGAG GTATATATAT TAATAAATAA 12610 .......... .......... .......... .......... .......... .......... 405 GAGTATATTT TAGTTACAGA TAATATATGA AGAATAAATA GTAAAGCCTA AAATATATTA 12550 .......... .......... .......... .......... .......... .......... 405 ATCAGACTCT ACAACCTAAC AATGTGTATA TCTATTAGTA TAAAGTATAT ATATATATTC 12490 .......... .......... .......... .......... .......... .......... 405 TAGTTTTTGA ACGGCAAGAA AACTAATGTT CCAAAAGTAT GAGGAATGTA TCATTTATGA 12430 .......... .......... .......... .......... .......... .......... 405 TAGTTTAAAA TATATTTATT TTTTTCTCAT TTAAATAATC TCGAGATAAT TTAATCTGAA 12370 .......... .......... .......... .......... .......... .......... 405 AACCAAATCA CGTGACATGG AAAAAAAAAA GAGTAATCAA ACTTTTCTTA ATCATTAATT 12310 .......... .......... .......... .......... .......... .......... 405 TTATCACTTA AAGAATATGT ATAAATAAGT GGTTAGGCTT CATTTGTACT TTTCATTCCC 12250 .......... .......... .......... .......... .......... .......... 405 ATTTAGCTAA TCTCTCAGTA ATGGCTGAGC AAGGAAGCGC CGCCGCAGCT CCGTCGTCTG 12190 .......... .......... .......... .......... .......... .......... 405 AGTTGAAAAG TCGGCCGGCC GGAAGCACCG AGCACAGCTG GTGCAAGGCG GTTCCCGGTG 12130 .......... .......... .......... .......... .......... .......... 405 GCACAGGTAT AACAGTCTTA GCTCTACTCT TGTCAAAACC ACCAGACATT TCACTTCTCC 12070 .......... .......... .......... .......... .......... .......... 405 AAAATGCCCT TCACAAACTC CAAAATTCCA ATCCTATCCT CAAATCTCAA CTCCATTACG 12010 .......... .......... .......... .......... .......... .......... 405 AATCAAGCAC AAATTCCTAC TCTTACATCA TTCCCTCCAC TTCTCATCTT CAAATCCAGC 11950 .......... .......... .......... .......... .......... .......... 405 CGTTCGATCT CTCATCAACG GTTCAGATTC TCCGACGCCT CAAAACCTCC GATCTCACCT 11890 .......... .......... .......... .......... .......... .......... 405 CCGTCTCCGA TTTTCATCTC ATCCTCGAAC ACGAAATCAA CCACAACTCA TGGATGAACA 11830 .......... .......... .......... .......... .......... .......... 405 CCGGCACTTC ATCAGATTCC GACACGGATA TCTTCTTCGC CAGCATTTAT CAATTAGAAA 11770 .......... .......... .......... .......... .......... .......... 405 ACGAAAAATC GGTGTTCGCT TTAAGGATTC ATACATCGGT GTGTGATCGG GCGGCTGCAT 11710 .......... .......... .......... .......... .......... .......... 405 TGGCGGTGCT GAAGAAGTTA TTGAAGCTGG TGAGTTGTGA GAAGGAAGAT GAAGAAGGGA 11650 .......... .......... .......... .......... .......... .......... 405 CAGAATTGGA AATATTGAAA AAGATGGAGG TTGGTTTGGG GATTGAAGAG TATATTCCAG 11590 .......... .......... .......... .......... .......... .......... 405 ATGGTAAAGC GAGTAAACCA TTTTGGGCGC GTGGGATTGA TATGGTGGGG TATGGTTTGA 11530 .......... .......... .......... .......... .......... .......... 405 ATTCATTGAG ATTTTGTAAT TTGAAGTTTA TGGATTCGGA ATCAACGAGA GGATCACAAG 11470 .......... .......... .......... .......... .......... .......... 405 TTGTGAAATT GCAGTTGAAT AAACAAGAGA CTGATCACAT TCTTGATGTA AGTTCTTCGC 11410 .......... .......... .......... .......... .......... .......... 405 ATTTTAGTAA ATTTCTTACC TTTTTACGCA TCTCGATTAA TTTCATTTTA TTTATGATTT 11350 .......... .......... .......... .......... .......... .......... 405 TGTTCATCGA GACTTGATTA GATAAGAAGA AATCACATAG CACTTGTTAA GTCTTTGATA 11290 .......... .......... .......... .......... .......... .......... 405 GTTTTTTTTG ACAACACATT AATTTTAAAC TTTTGCGCTT ATTTCTTTTT TTTATAAATT 11230 .......... .......... .......... .......... .......... .......... 405 TTATGTTTAT TAAGGCTTGA TTAGATAAGA AGAGATCACA TACTCACTCG TTTCAATTTG 11170 .......... .......... .......... .......... .......... .......... 405 TTTATTTTGT TATCTTTTTA GTCGTTTCAA ATAAGAACGA CTCTTTTTTC TTTTTTGGTT 11110 .......... .......... .......... .......... .......... .......... 405 GACCTCTCAT TAATTTTATT TTTCATGTGA TATGTTTACT CACAAGATTA AAAGTTATTT 11050 .......... .......... .......... .......... .......... .......... 405 TGATATATTT TATATATCTT TAATTTAAAA TGATAGGAAT CGATTTCTAA AACTATATTT 10990 .......... .......... .......... .......... .......... .......... 405 TAAATTATAA TCAGATAAAT AAATTGAAAC GGGAATAGTG TTTTTCTTAA GCTTCCTTAA 10930 .......... .......... .......... .......... .......... .......... 405 TTTAGAGCAA GATAGTGATA TTCCTTTTTT TCTCTTTCAA TAAATTTAAT TGTCAGTGTG 10870 .......... .......... .......... .......... .......... .......... 405 TTAAATATAT ATTTGATAAT TGATAGAGAA ACACTAATGT TTTACAAACT TAAAGAATTT 10810 .......... .......... .......... .......... .......... .......... 405 AAAACTTTTA AAATACTATA TTTAAGGAAG TATGTTAAGC CTATCTAAAT TAAAAGGATT 10750 .......... .......... .......... .......... .......... .......... 405 ATTTTTGTCA TTTTCTCGAT GTATGGTGTG TTGTCTTTAA TCATATATTT TTCTGACTTT 10690 .......... .......... .......... .......... .......... .......... 405 ATCATAATTA ATTATAATTT CCTTAGTATT ATTTGATAAT GTATATTTTT CTCACTTAAT 10630 .......... .......... .......... .......... .......... .......... 405 CATAAATTAA TTATAATATC CTTAGTGGTA TATTAAAAAT ATGAAAATAG ATATTATGGT 10570 .......... .......... .......... .......... .......... .......... 405 TGAAATTTAA GTGGAGACAA TACATTAGAT GATTCAAATT TCTTTCTCTA GTATTGAAAT 10510 .......... .......... .......... .......... .......... .......... 405 CGAATTGGCA GAAAGTACCG AAAGTCGGCC TCCCGCCCTA TCATCCCGTG TCTCAACCAA 10450 .......... .......... .......... .......... .......... .......... 405 TTTTTTTCTT GTCTCCAAAT CTCTCTTTTG GCTTTTGAAA CTTTGATTCG GTGCCTAAAT 10390 .......... .......... .......... .......... .......... .......... 405 TTTGATCGAT AAAGTTATCT GGTATTTACC TAGATGGCAA ATAGTAGGTA TCTAATTGAT 10330 .......... .......... .......... .......... .......... .......... 405 AACGTTTGCA AACTGAGTTG AACATCATCG TCATACAAAA ATAGATTTAA ATGTCATTTT 10270 .......... .......... .......... .......... .......... .......... 405 CAAATTGTCA AGTTAGGTTG ACATTTTATT TTCATTTTCT TTAGAAATTA GGCAAAGCTA 10210 .......... .......... .......... .......... .......... .......... 405 CTCTATGAAA ACTTGCTTGG CCCAATTTTC TTTTTTAGGT TAGTCTCATT TATGGCCCTC 10150 .......... .......... .......... .......... .......... .......... 405 ATTGAATATT CTCTTCACAT GATGTCCAAC TTTAATCATA TTTGAATTGT GAATTGGCCA 10090 .......... .......... .......... .......... .......... .......... 405 ATTTGCATGC TACATCTTTC ACATGACTAG AATCTGGCCT GATTGTGAGT AATGATATTA 10030 .......... .......... .......... .......... .......... .......... 405 CTAATTTTTC TAAAAATAAC TCGTGGTGTT CGGGTCGACT AGTGGTTACC TCAGTACTTT 9970 .......... .......... .......... .......... .......... .......... 405 CCATCTGCAT GTGTATCAAG CAACTCTGTT CACCGAGAAT GGTATAAACT AATACCGTTA 9910 .......... .......... .......... .......... .......... .......... 405 AATCAAAAGA TCCAATTCGG CTCAACTAAG ATCAGGTTTA TAGCCTGATT AATGGTTTAA 9850 .......... .......... .......... .......... .......... .......... 405 ATTTTATACA TCGACAGTGC AAGATCACAT TATTTAGAAG TTAGTTGTAT GTAACTGCCT 9790 .......... .......... .......... .......... .......... .......... 405 GTGATAAGTG TGTGCGACAC TACAAAAATG TTGTTCGCCA ATGTCAAATC TTCAAAAATT 9730 .......... .......... .......... .......... .......... .......... 405 ACATTACTTT ATCCGAATGC ACCTGAAAAA CATTTTTGAA GAGTCTGAGC AACAGGTTAC 9670 .......... .......... .......... .......... .......... .......... 405 GACTCCCTAT CTAAATGTAC ATTGTTTGCA CTTTAGAGCA TTAGAGGTAG TAACAAAATC 9610 .......... .......... .......... .......... .......... .......... 405 TGAATTTTGG TAGGGCTGTA AAACGAGAGG TATAAAACTG TGTGGACTAT TGGCTGCTGC 9550 .......... .......... .......... .......... .......... .......... 405 TGGATTAATT GCAGCTCATT CCTTAAAAGG CCTAAAGGAG AATCAATGGG AGAAGTATGC 9490 .......... .......... .......... .......... .......... .......... 405 AATTGTAACC CTTATTAACT GCCGTTCAAT TCTTGATCCA GTGCTTAGCC CTGATTTTCC 9430 .......... .......... .......... .......... .......... .......... 405 AGGTTCGTTA ATGCATTCAT GGTAAAAACT TACTTGTATC GGGTCTTTAT ATTTCTTGTA 9370 .......... .......... .......... .......... .......... .......... 405 CCGAGGCCTC CACTCTTGAC ACCCATCTAA CCCCATTGGT TACTACTGTC TACTGGTATC 9310 .......... .......... .......... .......... .......... .......... 405 CGATCTTTTT TTTCTTCTTT TTGGACCCAA GTTAATAATA AATGGTACCG CTACTGATGT 9250 .......... .......... .......... .......... .......... .......... 405 TCTACCAGTT GGTCAAGGCT AGTACACTCT TAGGTCCAGG TAACTACTCC CAATTGATCA 9190 .......... .......... .......... .......... .......... .......... 405 AGGCTAGTAC ACATGACAGA CTCTAGAACC CCCTCTTTGA TTTTCGTGCT CAAGCGTTGC 9130 .......... .......... .......... .......... .......... .......... 405 TTTGATAGTA ATTGTTATAG ACTAAATAGA AAACCTCAGC CTATTAAGGG AGGGAGAACC 9070 .......... .......... .......... .......... .......... .......... 405 TGTCAATCTA TAAACTCATA CGTACACTCA ATCGGGAGTC AAGTATTGGT TTGCAAGGAT 9010 .......... .......... .......... .......... .......... .......... 405 TCCTTTTAAG GTAAATAATA GAGTTGCTAT ATGTGACTTG CAAGTTCGTT GCCCATTATC 8950 .......... .......... .......... .......... .......... .......... 405 TATGTACTTG GAAAAGCTCA AATTACCCTT AGTCTGCTGG AAACATCCTA TTAGCCCTTT 8890 .......... .......... .......... .......... .......... .......... 405 TAACTTGAGC AAGTACACCA TACTTCAGTA GTCAGTACCA TGTGATTGTT CTTACATTTG 8830 .......... .......... .......... .......... .......... .......... 405 ATGTAACTCT CACTTCTGTT CAGCTTTTTC TTTTCATTGC TATTGTTGTA TCTTATCAGC 8770 .......... .......... .......... .......... .......... .......... 405 CTTTCTCGAG TCTTAAAACT CCGACTTCTA AACTCAAAAC TGGTTTGAAA TGCCCATTTT 8710 .......... .......... .......... .......... .......... .......... 405 GAGCTGGTTC AGGCTGATTG TTCCCGCTTA TCTAGATTTC ACTAATTGTG AGCTTCTGTT 8650 .......... .......... .......... .......... .......... .......... 405 ATTTTGGTCA TTTCGATTAC TGCATTGTGA TGTTTACTGA ACAGAGCATG TGAAATTAGG 8590 | || | ||||||| .......... .......... .......... .......... ....-TC-TG TTAAATTAGT 419 TCTTAGGCCT AACTCACACC CCAAAAGCTA GCTCAAAGGG AGGAGGATTG TTGTCATTCT 8530 |||||||||| |||||||||| |||||||||| TCTTAGGCCT AACTCACACC CCAAAAGCTA .......... .......... .......... 449 TTAACACCCC ACCTCACGCC CAGTGCTTAG CATCTGGTGC GTGAGCAATT TTTAATTTTG 8470 .......... .......... .......... .......... .......... .......... 449 GGGCTTTGAT ACCATGTTTA ATTAGGTCTT AAGCCTAACT CACACCCCAA AAGCTAGCTC 8410 .......... .......... .......... .......... .......... .......... 449 AAAGGGAGGA GGATTGCCTA AGCCTTATAA AGAGTCCACC CATCTCATTA ATCACCGATG 8350 ||||| | |||||| | || ||||||| |||| |||| ||||||| | | ||||||| ....AGAGGA GTATTGCCCA AG-CTTATAA GGAGTTCACC CATCTCA--A ACCACCGATA 502 TGGGACTTTT GTCATTCTTT AACACCCCAC CTCACGCCCA GT 8308 || ||||||| |||||||||| |||||||||| ||| || | || TGAGACTTTT GTCATTCTTT AACACCCCAC CTC-TGCTTA GT 543 hqPGS_C09HBa0168F14.1-2-_SGN-E542130- (8605 8560,8405 8308) ******************************************************************************** EST sequence 85 -strand 570 n (File: SGN-E300089-) 1 GCAGAATATC TTCCAGTACA TTGCATAAGT TTTAGCTTTT AGAACTTGTT GAACAATTAC 61 TATATTTTTG CAGCTGCTTG CCCTTGTCCA AGAACTACCT AAACATATGT CACTTATATA 121 TGATAATAAA GATCAAATTA GACGGAACTA GGGCTAGTAT GTGCGTAGCC AGTTATTTGC 181 TATTCTAAAC TTCTTTGCAT ACCAGCACAA TAACTAACCC TTTAAAGACC AATGAAATGT 241 ACTTTGGACA TACATGTTAT AGAAAACACA AGCAGTAGAG ATCATTCTAA AAAGAAGTAT 301 AGCCAGTTAT GCCAACAATA AAGTAGATTC TGTTAAATTA GTTCTTAGGC CTAACTCACA 361 CCCCAAAAGC TAAGAGGAGT ATTGCCCAAG CTTATAAGGA GTTCACCCAT CTCAAACCAC 421 CGATATGAGA CTTTTGTCAT TCTTTAACAC CCCACCTCTG CTTAGTATCC CCACCTCTGC 481 TTAGCATCTG GTGCGTGGAT AATTTTGATT TAGAAGGAGC CAACCCATCT CATTAATCGA 541 TGTGAATTTT TGTCATTCTT TAACATTCAA Predicted gene structure (within gDNA segment 12619 to 7676): Exon 1 8601 8560 ( 42 n); cDNA 331 372 ( 42 n); score: 0.952 Intron 1 8559 8406 ( 154 n); Pd: 0.000 (s: 0.95), Pa: 0.000 (s: 0.82) Exon 2 8405 8308 ( 98 n); cDNA 373 466 ( 94 n); score: 0.847 MATCH C09HBa0168F14.1-2- SGN-E300089- 0.847 140 0.246 C PGS_C09HBa0168F14.1-2-_SGN-E300089- (8601 8560,8405 8308) Alignment (genomic DNA sequence = upper lines): TGTGAAATTA GGTCTTAGGC CTAACTCACA CCCCAAAAGC TAGCTCAAAG GGAGGAGGAT 8542 ||| |||||| | |||||||| |||||||||| |||||||||| || TGTTAAATTA GTTCTTAGGC CTAACTCACA CCCCAAAAGC TA........ .......... 372 TGTTGTCATT CTTTAACACC CCACCTCACG CCCAGTGCTT AGCATCTGGT GCGTGAGCAA 8482 .......... .......... .......... .......... .......... .......... 372 TTTTTAATTT TGGGGCTTTG ATACCATGTT TAATTAGGTC TTAAGCCTAA CTCACACCCC 8422 .......... .......... .......... .......... .......... .......... 372 AAAAGCTAGC TCAAAGGGAG GAGGATTGCC TAAGCCTTAT AAAGAGTCCA CCCATCTCAT 8362 ||| ||| |||||| ||| ||||| || |||| || ||||||||| .......... ......AGAG GAGTATTGCC CAAG-CTTAT AAGGAGTTCA CCCATCTCA- 414 TAATCACCGA TGTGGGACTT TTGTCATTCT TTAACACCCC ACCTCACGCC CAGT 8308 || |||||| | || ||||| |||||||||| |||||||||| ||||| || ||| -AACCACCGA TATGAGACTT TTGTCATTCT TTAACACCCC ACCTC-TGCT TAGT 466 hqPGS_C09HBa0168F14.1-2-_SGN-E300089- (8601 8560,8405 8308) ******************************************************************************** EST sequence 220 -strand 611 n (File: SGN-E544551-) 1 AGCAACTTCA ATCACTAGAG CAAGCCGCGG TTAATAATAG GCCGATGATT TCTGGATTTT 61 CAACAGCAAT GTCATCATCA GGGGGGCCAA TGAATTATAA TTCAAGCTCT ATTAGGGCAT 121 GCCAGCCTCA TTAATCCATG ATCTCTGGTG CACAAATGCT TAGTTAAAAT AAAATGAAAA 181 TAACATTTGT TAAAGAATGA CAAAAGTCTC ACATCAGTGG TTAATGAGAT GGATAGACTT 241 CTTATAAGGG TTGGACAATC CTCCTCCCTT TGATCTAGCT TTTGGGGTGT GAGTTAGGCC 301 TAAGACCTAA TTTCACAGTT TCTACGCAGC GTCCTGATCA TTACCATGCT AATGAGTAAA 361 AAAAAATTTT TGTAAAGATT TGGTTAAATG GTGTGTATTT TCCAGCCTCA TTCTTCAATC 421 CCAAAGGCTA GTCTTAGGTT TCTCAATTTG TGCAATGTTA ACTTTGTGCG AGAACTATGC 481 TAATTTTTTC TGTATCGTTC CAATATCATA AGGGACTAGG TTTGCCTTGT GTTTACAATT 541 CCAGTCTTGC GCTAGAAGCA AGGCAAATAG TGAGCAGAGT TGGACATTTT TTATTTAAAA 601 GGTGTGGGTT C Predicted gene structure (within gDNA segment 5389 to 12141): Exon 1 8326 8426 ( 101 n); cDNA 188 288 ( 101 n); score: 0.891 Intron 1 8427 8572 ( 146 n); Pd: 0.709 (s: 0.88), Pa: 0.000 (s: 0) Exon 2 8573 8607 ( 35 n); cDNA 289 323 ( 35 n); score: 0.914 Intron 2 8608 9965 (1358 n); Pd: 0.000 (s: 0), Pa: 0.529 (s: 0) Exon 3 9966 9979 ( 14 n); cDNA 324 337 ( 14 n); score: 0.643 MATCH C09HBa0168F14.1-2+ SGN-E544551- 0.891 150 0.245 C PGS_C09HBa0168F14.1-2+_SGN-E544551- (8326 8426,8573 8607,9966 9979) Alignment (genomic DNA sequence = upper lines): TGTTAAAGAA TGACAAAAGT CCCACATCGG TGATTAATGA GATGGGTGGA CTCTTTATAA 8385 |||||||||| |||||||||| | |||||| | || ||||||| ||||| | || || |||||| TGTTAAAGAA TGACAAAAGT CTCACATCAG TGGTTAATGA GATGGATAGA CTTCTTATAA 247 GGCTTAGGCA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAG GCTTAAGACC 8445 || || | || |||||||||| |||||| ||| |||||||||| | GGGTTGGACA ATCCTCCTCC CTTTGATCTA GCTTTTGGGG T......... .......... 288 TAATTAAACA TGGTATCAAA GCCCCAAAAT TAAAAATTGC TCACGCACCA GATGCTAAGC 8505 .......... .......... .......... .......... .......... .......... 288 ACTGGGCGTG AGGTGGGGTG TTAAAGAATG ACAACAATCC TCCTCCCTTT GAGCTAGCTT 8565 .......... .......... .......... .......... .......... .......... 288 TTGGGGTGTG AGTTAGGCCT AAGACCTAAT TTCACATGCT CTGTTCAGTA AACATCACAA 8625 ||| |||||||||| |||||||||| |||||| | || .......GTG AGTTAGGCCT AAGACCTAAT TTCACAGTTT CT........ .......... 323 TGCAGTAATC GAAATGACCA AAATAACAGA AGCTCACAAT TAGTGAAATC TAGATAAGCG 8685 .......... .......... .......... .......... .......... .......... 323 GGAACAATCA GCCTGAACCA GCTCAAAATG GGCATTTCAA ACCAGTTTTG AGTTTAGAAG 8745 .......... .......... .......... .......... .......... .......... 323 TCGGAGTTTT AAGACTCGAG AAAGGCTGAT AAGATACAAC AATAGCAATG AAAAGAAAAA 8805 .......... .......... .......... .......... .......... .......... 323 GCTGAACAGA AGTGAGAGTT ACATCAAATG TAAGAACAAT CACATGGTAC TGACTACTGA 8865 .......... .......... .......... .......... .......... .......... 323 AGTATGGTGT ACTTGCTCAA GTTAAAAGGG CTAATAGGAT GTTTCCAGCA GACTAAGGGT 8925 .......... .......... .......... .......... .......... .......... 323 AATTTGAGCT TTTCCAAGTA CATAGATAAT GGGCAACGAA CTTGCAAGTC ACATATAGCA 8985 .......... .......... .......... .......... .......... .......... 323 ACTCTATTAT TTACCTTAAA AGGAATCCTT GCAAACCAAT ACTTGACTCC CGATTGAGTG 9045 .......... .......... .......... .......... .......... .......... 323 TACGTATGAG TTTATAGATT GACAGGTTCT CCCTCCCTTA ATAGGCTGAG GTTTTCTATT 9105 .......... .......... .......... .......... .......... .......... 323 TAGTCTATAA CAATTACTAT CAAAGCAACG CTTGAGCACG AAAATCAAAG AGGGGGTTCT 9165 .......... .......... .......... .......... .......... .......... 323 AGAGTCTGTC ATGTGTACTA GCCTTGATCA ATTGGGAGTA GTTACCTGGA CCTAAGAGTG 9225 .......... .......... .......... .......... .......... .......... 323 TACTAGCCTT GACCAACTGG TAGAACATCA GTAGCGGTAC CATTTATTAT TAACTTGGGT 9285 .......... .......... .......... .......... .......... .......... 323 CCAAAAAGAA GAAAAAAAAG ATCGGATACC AGTAGACAGT AGTAACCAAT GGGGTTAGAT 9345 .......... .......... .......... .......... .......... .......... 323 GGGTGTCAAG AGTGGAGGCC TCGGTACAAG AAATATAAAG ACCCGATACA AGTAAGTTTT 9405 .......... .......... .......... .......... .......... .......... 323 TACCATGAAT GCATTAACGA ACCTGGAAAA TCAGGGCTAA GCACTGGATC AAGAATTGAA 9465 .......... .......... .......... .......... .......... .......... 323 CGGCAGTTAA TAAGGGTTAC AATTGCATAC TTCTCCCATT GATTCTCCTT TAGGCCTTTT 9525 .......... .......... .......... .......... .......... .......... 323 AAGGAATGAG CTGCAATTAA TCCAGCAGCA GCCAATAGTC CACACAGTTT TATACCTCTC 9585 .......... .......... .......... .......... .......... .......... 323 GTTTTACAGC CCTACCAAAA TTCAGATTTT GTTACTACCT CTAATGCTCT AAAGTGCAAA 9645 .......... .......... .......... .......... .......... .......... 323 CAATGTACAT TTAGATAGGG AGTCGTAACC TGTTGCTCAG ACTCTTCAAA AATGTTTTTC 9705 .......... .......... .......... .......... .......... .......... 323 AGGTGCATTC GGATAAAGTA ATGTAATTTT TGAAGATTTG ACATTGGCGA ACAACATTTT 9765 .......... .......... .......... .......... .......... .......... 323 TGTAGTGTCG CACACACTTA TCACAGGCAG TTACATACAA CTAACTTCTA AATAATGTGA 9825 .......... .......... .......... .......... .......... .......... 323 TCTTGCACTG TCGATGTATA AAATTTAAAC CATTAATCAG GCTATAAACC TGATCTTAGT 9885 .......... .......... .......... .......... .......... .......... 323 TGAGCCGAAT TGGATCTTTT GATTTAACGG TATTAGTTTA TACCATTCTC GGTGAACAGA 9945 .......... .......... .......... .......... .......... .......... 323 GTTGCTTGAT ACACATGCAG ATGGAAAGTA CTGA 9979 | | | || |||| .......... .......... ACGCAGCGTC CTGA 337 hqPGS_C09HBa0168F14.1-2+_SGN-E544551- (8326 8426,8573 8607) ******************************************************************************** EST sequence 156 -strand 756 n (File: SGN-E339247-) 1 CTGCAGAACG TCTCTCCCAA ATATATTGCC CTGCAGATCA CAAATTGTAA AGGGGAAAAC 61 AGCAATAACT AATCACAACA AATCCACCAT ATAAGCAGTG ATTGCACATC TCCCATTATT 121 TTTTGTTCGA ATATATGCAC AAAATTTTTG ACAACATATA CTCCATTTCA AAAAGAATAA 181 CGGATATCAG AGTACGAAGG CTCAAACCAT TCGATCTCAT TGCAATTTGT AGATCACTTC 241 TTTCAAATTT TAAAAATGAA ATGTCCACAT TTAAAAACTG CATAAACAGT AGTAATACTA 301 GAAGTTTCAA CTTTTGTAAT TTTAAATTAT TACAAATTTA CAAGAAGAAT CTATTGGACC 361 TCAAAAAAGA AATACTACAA GAACAACAAC AATCCCAGTG TGATCCCACA AGTGTTGGTG 421 AGGAGGTAGG ATGTAGGATG TATGCAGACC TTACCCCTAC TTTGGGGTAG AGAGGTTGTT 481 TCTGATTGGC TCGAAAATGT GAAAGAATGA CAAAAGTCCC ACATTGGTGG TTAATAAGAT 541 GGGTGGACTC TTTATAAGGC TTGAGTTAGC TTTTGGGGTG TGAGTTAGGC CTAAGACCTA 601 GTAGACCCAA AATCAAACAT TGCTCACACA CCAGATGCTA AGCACTGGCA TGAGGTGGTG 661 TGTTAAAGAA TGACAAAAGT CTCACATCGG TGGTTAATGA GATGGGTGAA CTCCTTATAA 721 GACTTGGACA ATTATCCTCC CTTTGAGCTA GCTTTT Predicted gene structure (within gDNA segment 2710 to 9939): Exon 1 5366 5492 ( 127 n); cDNA 219 346 ( 128 n); score: 0.610 Intron 1 5493 5991 ( 499 n); Pd: 0.000 (s: 0.66), Pa: 0.797 (s: 0) Exon 2 5992 6029 ( 38 n); cDNA 347 384 ( 38 n); score: 0.526 Intron 2 6030 7376 (1347 n); Pd: 0.540 (s: 0), Pa: 0.578 (s: 0) Exon 3 7377 7414 ( 38 n); cDNA 385 421 ( 37 n); score: 0.553 Intron 3 7415 8174 ( 760 n); Pd: 0.041 (s: 0), Pa: 0.000 (s: 0.56) Exon 4 8175 8258 ( 84 n); cDNA 422 501 ( 80 n); score: 0.548 Intron 4 8259 8329 ( 71 n); Pd: 0.000 (s: 0.54), Pa: 0.000 (s: 0.94) Exon 5 8330 8426 ( 97 n); cDNA 502 598 ( 97 n); score: 0.742 Intron 5 8427 8460 ( 34 n); Pd: 0.709 (s: 0.56), Pa: 0.000 (s: 0.84) Exon 6 8461 8539 ( 79 n); cDNA 599 676 ( 78 n); score: 0.873 MATCH C09HBa0168F14.1-2+ SGN-E339247- 0.683 463 0.612 C PGS_C09HBa0168F14.1-2+_SGN-E339247- (5366 5492,5992 6029,7377 7414,8175 8258,8330 8426,8461 8539) Alignment (genomic DNA sequence = upper lines): ATTAAAATTT ACACATAAAA TCTTCAATTT TTTTGAAATA AAATTTATAC ATTTGTAAAC 5425 ||| ||||| | || | |||| | | ||| |||| |||| | || |||| |||| ATTGCAATTT GTAGATCACT TCTTTCAAAT TTTAAAAATG AAATGTCCAC ATTTAAAAAC 278 TACGT-AACA --AAAAGTAC TACAAGTCAC AATAATTGAC AATTCAAAAT ATTTACAAGA 5482 | | | |||| | | ||| || |||| | || ||| |||| |||| |||||| | TGCATAAACA GTAGTAATAC TAGAAGTTTC AACTTTTG-T AATTTTAAAT TATTACAA-A 336 TATATGAAAA ATTTACAGTC AAAGATAAAC TTGTTAAAAT CTCAAAAATT CAAAATGTGT 5542 | || | || TTTACAAGAA .......... .......... .......... .......... .......... 346 CGCATAAATT GAAATAGAGA GAATAATTAT TTACGTTAAT GATATAATTG GACATAATTT 5602 .......... .......... .......... .......... .......... .......... 346 CGATAAGAAA AATATCCCGA ATCTCCAATG GAAACTTCTA TCGAGATATT TTTAGTTTTT 5662 .......... .......... .......... .......... .......... .......... 346 AGTTGATGGA ATGTGATAGA GTTTATGTAC GAACACATAA AATTCAAATT CTGACTATTT 5722 .......... .......... .......... .......... .......... .......... 346 CTTCTTGATC TATATAGGCT ATTTATAAGT TTGATATGCA CTAATTGCTA TTATTGATAA 5782 .......... .......... .......... .......... .......... .......... 346 GTCAAAAGTG CATATATAGA GACAACAATT TAAGGACAAA TAAATTAAAC CACCACAAGC 5842 .......... .......... .......... .......... .......... .......... 346 ATATAGCCAC TCACTCTTCC AATTTTTTAA AAGTCAAAAG TTGGCCCTCT TTTGATAATT 5902 .......... .......... .......... .......... .......... .......... 346 TCTCCACACT ACAAAAAGCC AATTTACATT GCAAAAATAT TCAAGAAATC AACTTCTTTT 5962 .......... .......... .......... .......... .......... .......... 346 CTCATTTTCT TGTACACAAA AAATGCTAGG CAAGAAGTTT GGTTCAATGA AGAAATTAGC 6022 | | | | |||| | |||||| .......... .......... .........G AATCTATTGG ACCTCAAAAA AGAAATACTA 377 CAAAAAGGCT AAGGTTATTA GATCACCAAG TGCTAATTCT ATTTATAGCC ATGATGAATC 6082 ||| || CAAGAAC... .......... .......... .......... .......... .......... 384 CCAACATCTT GAATATTTAC TTGTTAAGGA TGATCATGAT CATGATCATG ATGATCAAGA 6142 .......... .......... .......... .......... .......... .......... 384 TCAAGATTAT CAAGGGGTTA GTCCAACAAG TGCTAAATCA TCAAAAAAGA TGGGAACATT 6202 .......... .......... .......... .......... .......... .......... 384 TGCAGTGTAT GTAGGGGAAG AAAGGGAGCG ATTCGCGGTG CCAACGAGCT ATCTTTCACA 6262 .......... .......... .......... .......... .......... .......... 384 TCCATTGTTC AAGATTTTGT TGGAGAAGAC ATATAATGAG TTTGGTTTTG AGCAAACAAA 6322 .......... .......... .......... .......... .......... .......... 384 TGGACTTGTG GTTCCATGTA GTGTTGCTGC ATTTCAAGAA GTGGTCAATG CTGTGGAGTG 6382 .......... .......... .......... .......... .......... .......... 384 TTGCAATGGG AAGTTTGATT TTGGTGGCTT GGTTGAGGAA TTTCTATAAT TAGGTCTATA 6442 .......... .......... .......... .......... .......... .......... 384 TTATTCAAGG TCTTATATAT TCACAACTAC GTACAACGTT TCAGTCTCGA ACAAGTTGGA 6502 .......... .......... .......... .......... .......... .......... 384 ATCAATTACT TTTCTAACTA GAGTGAAAAA ATAGCATTTG GTGAAATAGA TTTTAAAAGG 6562 .......... .......... .......... .......... .......... .......... 384 ATTAAATCAT ATATTAAGGA GGTAATTTAC AATTTAAAGT CTTAGTTACT TTTGTACCAA 6622 .......... .......... .......... .......... .......... .......... 384 AGAGATAGTG TAAATTATTA CACCTTTAAT ATCATAGGTA ATTAAGCTTC CTTTTGTGTT 6682 .......... .......... .......... .......... .......... .......... 384 TTTTTTCCCA TGAGGAGAAA TATCAATTGA GAGAAGTAAA TCTTGTTGTT TATCAACTAG 6742 .......... .......... .......... .......... .......... .......... 384 CTAAATTGTA AAATTTAAGT GACCAGACCA ATTGAAAGAG AAATGTAATT GTTAATTATT 6802 .......... .......... .......... .......... .......... .......... 384 TACTTTTTGC CCTTTCAAAT ACATTAAGTG GTACATTAAG ACCACTTTGA GAATGTTTAA 6862 .......... .......... .......... .......... .......... .......... 384 ACTCGTTCAA ACAGTCAGTC TCAGAGTTAA AGTCGAAGTC AGATAAAAAA AAATAGTTAT 6922 .......... .......... .......... .......... .......... .......... 384 GTAAGCTGAT ATTTACCTTA AATAAACTAA GGATGTACAC TTCTATCGTT TTAATCTCGC 6982 .......... .......... .......... .......... .......... .......... 384 TCCTCACCTT GTTTTTCTTG TCATTTCACA TGGGCGAAAG ACTTTTTTTT TTTAGATTCG 7042 .......... .......... .......... .......... .......... .......... 384 ATATAGAAAT GGAATGTAGT TATTAGTCAT AGTTATCAAG TCAAAAGGGT TTTCTAATTA 7102 .......... .......... .......... .......... .......... .......... 384 GTCAAAATGG ATTATTGGTA GTTTGATTAT CATCAAGAGG TGCATGCATG TTATACAATT 7162 .......... .......... .......... .......... .......... .......... 384 ATTTAATTTT GACTTGGTCA AAAATTAGAT ACTGAACATA GTGGTAACCA CATTTACCAA 7222 .......... .......... .......... .......... .......... .......... 384 AAAAAACAAA ACAAAAAAAG TACTAATTGG ATGCATGTTG GTTGAAGTTA GCAGCATTTT 7282 .......... .......... .......... .......... .......... .......... 384 TAGTAGTTAG GTGATAAATT AGAGCCACAA ATGACTCATG GAATGTTTTT AATTTTGTAA 7342 .......... .......... .......... .......... .......... .......... 384 TTTTCGAAAG AGTTTATGTT ATCTGCACTG TCAGTATATC AATCACATTA AGTTCACCTG 7402 | | | |||| || | | || || .......... .......... .......... ....AACAAC AATCCCAGTG TGATC-CCAC 409 GAGAATAGAA GAGTAACCTG CTATAATCAG TTAAATTTTG ACATGATGTA AAATTTCGTT 7462 || | | || AAGTGTTGGT GA........ .......... .......... .......... .......... 421 TACATCGTCA ACGGCTCACA CATAAACTCA GCATCTTTTA AAACAAGCAG AAAAAGAACC 7522 .......... .......... .......... .......... .......... .......... 421 AAGAACTTGA AACTTTTGAT GTCAAAAACA AACAACTTAC TGCATTTTCA TTGAACATGA 7582 .......... .......... .......... .......... .......... .......... 421 TGAGTGGGAA AATATAGTGT TTGTTTTAGT AATATACTAG CAGTCAATAA GGATTTTTTT 7642 .......... .......... .......... .......... .......... .......... 421 CATTTCACCA ATGAGCTCCT GTATTTGCTC TCTAGTATGC AAGGGGAAGG GATAAACACA 7702 .......... .......... .......... .......... .......... .......... 421 TGCACAATCC AAATGTCCGT CCCTGATTGT GTCGAATATG GCAATAGAAG GGCCTACCCC 7762 .......... .......... .......... .......... .......... .......... 421 ATGCACGGAT GCACACCCGA TGAAGTCTTC TAATCCGATT TCTTGATGCA TTGTGCTGGA 7822 .......... .......... .......... .......... .......... .......... 421 GGTATCGATC ACAGTGTCTT CAAACACGGA GATCAGAGAA GTTCTAAGTG AAGAGGATGG 7882 .......... .......... .......... .......... .......... .......... 421 AGTTAAGCCG GGATTATCAA TGGCCCTGCA CATGAGGAAA TTCAGGTCTC CCATGTCTGT 7942 .......... .......... .......... .......... .......... .......... 421 GAAATGCTTG TTATTGTTCT TGGCGTTGAT AAAAGATGTG TAACTTCTCT TTGCTAGCTC 8002 .......... .......... .......... .......... .......... .......... 421 CCATAAGTCA TCTCCTCCCT TAACGTCATG CGTGTTGAGG ATGGCAGAAT GATAAAAGCC 8062 .......... .......... .......... .......... .......... .......... 421 TGCACGATTT AGATCATTTT AATATGCTCT GTTAAAGAAT GACAAAAGTC TCACATCGAT 8122 .......... .......... .......... .......... .......... .......... 421 GATTAATGAG ATGGGTGAAT TCTTTATAAG GCTTAGGCAA TCCTCCTCTC TTTGAGCTAG 8182 ||| ||| .......... .......... .......... .......... .......... ..GGAGGTAG 429 CTTTTGAGGT GTGAGTTAGG CCTAAGACCT AATTTCACAT GGTATCAGAG CTGGGTCCGT 8242 | | | | || | || ||| | ||| | ||| | | | || | || || | GATGTAGGAT GT-ATGCAGA CCTTACCCCT ACTTTGGGGT AG-A-GAG-G TTGTTTCTGA 485 CTCACCCGAT GTTGTGGTCC CCAAAATTAA AATTGTCCAC GCACTGGGCG TAAAATTGTC 8302 | | ||| |||| TTGGCTCGAA AATGTG.... .......... .......... .......... .......... 501 CACGCACTGG GCGTGAGGTG GGGTGTTAAA GAATGACAAA AGTCCCACAT CGGTGATTAA 8362 ||| |||||||||| |||||||||| |||| |||| .......... .......... .......AAA GAATGACAAA AGTCCCACAT TGGTGGTTAA 534 TGAGATGGGT GGACTCTTTA TAAGGCTTAG GCAATCCTCC TCCCTTTGAG CTAGCTTTTG 8422 | |||||||| |||||||||| |||||||| | | | | | |||| ||| | TAAGATGGGT GGACTCTTTA TAAGGCTTGA GTTAGCTTTT GGGGTGTGAG TTAGGCCTAA 594 GGGTGTGAGT TAGGCTTAAG ACCTAATTAA ACATGGTATC AAAGCCCCAA AATTAAAAAT 8482 | | || ||||| ||| ||| || GACC...... .......... .......... ........TA GTAGACCCAA AATCAAACAT 620 TGCTCACGCA CCAGATGCTA AGCACTGGGC GTGAGGTGGG GTGTTAAAGA ATGACAA 8539 ||||||| || |||||||||| |||||| ||| |||||||| |||||||||| ||||||| TGCTCACACA CCAGATGCTA AGCACT-GGC ATGAGGTGGT GTGTTAAAGA ATGACAA 676 hqPGS_C09HBa0168F14.1-2+_SGN-E339247- (8330 8426,8461 8539) ******************************************************************************** EST sequence 174 -strand 650 n (File: SGN-E392149-) 1 AATTTGGAAT GATTTGGGGA AGGAAATAGG AGAATTCGGA ACAGGGAAAT CGTCATATGT 61 TATAAACTTG ATTTGTACTG CCATTTCTTG GCAGTTATAC GCTGTTGGAT CAGTTGGATT 121 GGTTTACAAG GCTTTTGCTT TATTCTCAAA TGTGATAATC AATTTGGGAT CTTCAACCCC 181 CCCCCCCCTT GCAATGGTGT TCTTGAAAGA TAGAATGAAT GGATTGAAGG TGTTTTCATT 241 GTTATTGGGA TTATGGGGAT ATGCATCATA TATATATCAA CATTATCTCG ATGATTTAGA 301 GGCAAAAACA AGTGAAGTTA AATCCTCAGA TGATCAAGCT GATAATTTAT AATAAACTTA 361 CCTCATTCAA AGAATTTGAA TCATATATGT AAACGTGTTA AATAATGACA AAAATCCCAC 421 ATCGGTGATT AATGAGATGG GTGGACTCTT TATAAGGCTT GGGCAATCCT CCTCCCTTTG 481 AGCTAGCTTT TGGGGTGTGA GTTAGGCCTA AGACCTAATT TCACAAAACG TGAAGAGTTC 541 TATGTTATAA GTTCAATATG ATGTCGTTTA AAAAAGTGTA AATAGTTCAA AAAGTTTTAT 601 AAGAGATAAA TTAGTTAAAT TATTCTTTTT TAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 3595 to 10467): Exon 1 6111 6158 ( 48 n); cDNA 329 373 ( 45 n); score: 0.583 Intron 1 6159 6561 ( 403 n); Pd: 0.830 (s: 0.58), Pa: 0.000 (s: 0) Exon 2 6562 6583 ( 22 n); cDNA 374 395 ( 22 n); score: 0.636 Intron 2 6584 8325 (1742 n); Pd: 0.954 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 8326 8454 ( 129 n); cDNA 396 524 ( 129 n); score: 0.953 PPA cDNA 632 650 MATCH C09HBa0168F14.1-2+ SGN-E392149- 0.953 199 0.306 C PGS_C09HBa0168F14.1-2+_SGN-E392149- (6111 6158,6562 6583,8326 8454) Alignment (genomic DNA sequence = upper lines): GATGATCATG ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA 6170 |||||||| | | || || | || || || | | |||| | GATGATCAAG CTGATAAT-- TTATAAT-AA ACTTACCTCA TTCAAAGA.. .......... 373 AGTGCTAAAT CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG 6230 .......... .......... .......... .......... .......... .......... 373 CGATTCGCGG TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG 6290 .......... .......... .......... .......... .......... .......... 373 ACATATAATG AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT 6350 .......... .......... .......... .......... .......... .......... 373 GCATTTCAAG AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC 6410 .......... .......... .......... .......... .......... .......... 373 TTGGTTGAGG AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT 6470 .......... .......... .......... .......... .......... .......... 373 ACGTACAACG TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA 6530 .......... .......... .......... .......... .......... .......... 373 AAATAGCATT TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT 6590 || |||| |||||| | | .......... .......... .......... .ATTTGAATC ATATATGTAA ACG....... 395 ACAATTTAAA GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA 6650 .......... .......... .......... .......... .......... .......... 395 ATATCATAGG TAATTAAGCT TCCTTTTGTG TTTTTTTTCC CATGAGGAGA AATATCAATT 6710 .......... .......... .......... .......... .......... .......... 395 GAGAGAAGTA AATCTTGTTG TTTATCAACT AGCTAAATTG TAAAATTTAA GTGACCAGAC 6770 .......... .......... .......... .......... .......... .......... 395 CAATTGAAAG AGAAATGTAA TTGTTAATTA TTTACTTTTT GCCCTTTCAA ATACATTAAG 6830 .......... .......... .......... .......... .......... .......... 395 TGGTACATTA AGACCACTTT GAGAATGTTT AAACTCGTTC AAACAGTCAG TCTCAGAGTT 6890 .......... .......... .......... .......... .......... .......... 395 AAAGTCGAAG TCAGATAAAA AAAAATAGTT ATGTAAGCTG ATATTTACCT TAAATAAACT 6950 .......... .......... .......... .......... .......... .......... 395 AAGGATGTAC ACTTCTATCG TTTTAATCTC GCTCCTCACC TTGTTTTTCT TGTCATTTCA 7010 .......... .......... .......... .......... .......... .......... 395 CATGGGCGAA AGACTTTTTT TTTTTAGATT CGATATAGAA ATGGAATGTA GTTATTAGTC 7070 .......... .......... .......... .......... .......... .......... 395 ATAGTTATCA AGTCAAAAGG GTTTTCTAAT TAGTCAAAAT GGATTATTGG TAGTTTGATT 7130 .......... .......... .......... .......... .......... .......... 395 ATCATCAAGA GGTGCATGCA TGTTATACAA TTATTTAATT TTGACTTGGT CAAAAATTAG 7190 .......... .......... .......... .......... .......... .......... 395 ATACTGAACA TAGTGGTAAC CACATTTACC AAAAAAAACA AAACAAAAAA AGTACTAATT 7250 .......... .......... .......... .......... .......... .......... 395 GGATGCATGT TGGTTGAAGT TAGCAGCATT TTTAGTAGTT AGGTGATAAA TTAGAGCCAC 7310 .......... .......... .......... .......... .......... .......... 395 AAATGACTCA TGGAATGTTT TTAATTTTGT AATTTTCGAA AGAGTTTATG TTATCTGCAC 7370 .......... .......... .......... .......... .......... .......... 395 TGTCAGTATA TCAATCACAT TAAGTTCACC TGGAGAATAG AAGAGTAACC TGCTATAATC 7430 .......... .......... .......... .......... .......... .......... 395 AGTTAAATTT TGACATGATG TAAAATTTCG TTTACATCGT CAACGGCTCA CACATAAACT 7490 .......... .......... .......... .......... .......... .......... 395 CAGCATCTTT TAAAACAAGC AGAAAAAGAA CCAAGAACTT GAAACTTTTG ATGTCAAAAA 7550 .......... .......... .......... .......... .......... .......... 395 CAAACAACTT ACTGCATTTT CATTGAACAT GATGAGTGGG AAAATATAGT GTTTGTTTTA 7610 .......... .......... .......... .......... .......... .......... 395 GTAATATACT AGCAGTCAAT AAGGATTTTT TTCATTTCAC CAATGAGCTC CTGTATTTGC 7670 .......... .......... .......... .......... .......... .......... 395 TCTCTAGTAT GCAAGGGGAA GGGATAAACA CATGCACAAT CCAAATGTCC GTCCCTGATT 7730 .......... .......... .......... .......... .......... .......... 395 GTGTCGAATA TGGCAATAGA AGGGCCTACC CCATGCACGG ATGCACACCC GATGAAGTCT 7790 .......... .......... .......... .......... .......... .......... 395 TCTAATCCGA TTTCTTGATG CATTGTGCTG GAGGTATCGA TCACAGTGTC TTCAAACACG 7850 .......... .......... .......... .......... .......... .......... 395 GAGATCAGAG AAGTTCTAAG TGAAGAGGAT GGAGTTAAGC CGGGATTATC AATGGCCCTG 7910 .......... .......... .......... .......... .......... .......... 395 CACATGAGGA AATTCAGGTC TCCCATGTCT GTGAAATGCT TGTTATTGTT CTTGGCGTTG 7970 .......... .......... .......... .......... .......... .......... 395 ATAAAAGATG TGTAACTTCT CTTTGCTAGC TCCCATAAGT CATCTCCTCC CTTAACGTCA 8030 .......... .......... .......... .......... .......... .......... 395 TGCGTGTTGA GGATGGCAGA ATGATAAAAG CCTGCACGAT TTAGATCATT TTAATATGCT 8090 .......... .......... .......... .......... .......... .......... 395 CTGTTAAAGA ATGACAAAAG TCTCACATCG ATGATTAATG AGATGGGTGA ATTCTTTATA 8150 .......... .......... .......... .......... .......... .......... 395 AGGCTTAGGC AATCCTCCTC TCTTTGAGCT AGCTTTTGAG GTGTGAGTTA GGCCTAAGAC 8210 .......... .......... .......... .......... .......... .......... 395 CTAATTTCAC ATGGTATCAG AGCTGGGTCC GTCTCACCCG ATGTTGTGGT CCCCAAAATT 8270 .......... .......... .......... .......... .......... .......... 395 AAAATTGTCC ACGCACTGGG CGTAAAATTG TCCACGCACT GGGCGTGAGG TGGGGTGTTA 8330 ||||| .......... .......... .......... .......... .......... .....TGTTA 400 AAGAATGACA AAAGTCCCAC ATCGGTGATT AATGAGATGG GTGGACTCTT TATAAGGCTT 8390 || ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATGACA AAAATCCCAC ATCGGTGATT AATGAGATGG GTGGACTCTT TATAAGGCTT 460 AGGCAATCCT CCTCCCTTTG AGCTAGCTTT TGGGGTGTGA GTTAGGCTTA AGACCTAATT 8450 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GGGCAATCCT CCTCCCTTTG AGCTAGCTTT TGGGGTGTGA GTTAGGCCTA AGACCTAATT 520 AAAC 8454 || TCAC 524 hqPGS_C09HBa0168F14.1-2+_SGN-E392149- (8326 8454) ******************************************************************************** EST sequence 229 -strand 739 n (File: SGN-E369423-) 1 AAAGTATCAC GTTAAAACAA GTCATGAAAA TGTCGTTTTT CATAGGTTTT TTCGTGACGA 61 TTGCTTCGTT GATTGGGCTT TTCGCGAGCG GTAATTGGAA TGATTTGGAG AAGGAAATAG 121 GAGAATACAG AACAGGGAAA TCGTCATATG TTATAAACTT GATTTGTACT GCCATTTCTT 181 GGCAGTTATA CGCTGTTGGA TCAGTTGGAT TGGTTTACAA GGCTTCTGCT TTATTCTCAA 241 ATGTGATAAT CAATTTGGGA TCTTCAACTG TGCCAATTTT TGCAATGGTG TTCTTGAAAG 301 ATAGAATGAA TGGATTGAAG GTGTTTTCAT TGTTATTGGG ATTATGGGGA TATGCATCAT 361 ATATATATCA ACATTATCTC GATGATTTAG AGGCAAAAAC AAGTGAAGTT AAATCCTCAG 421 ATGATCAAGC TGATAATTTA TAATAAACTT ACCTCATTCA AAGAATTTGA ATCATATATG 481 TAAACGTGTT AAATAATGAC AAAAATCCCA CATCGGTGAT TAATGAGATG GGTGGACTCT 541 TTATAAGGCT TGGGCAATCC TCCTCCCTTT GAGCTAGCTT TTGGGGTGTG AGTTAGGCCT 601 AAGACCTAAT TTCACAAAAC GTGAAGAGTT CTATGTTATA AGTTCAATAT GATGTCGTTT 661 AAAAAAGTGT AAATAGTTCA AAAAGTTTTA TAAGAGATAA ATTAGTTAAA TTATTCTTTT 721 TAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 2685 to 10447): Exon 1 6111 6158 ( 48 n); cDNA 420 464 ( 45 n); score: 0.583 Intron 1 6159 6561 ( 403 n); Pd: 0.830 (s: 0.58), Pa: 0.000 (s: 0) Exon 2 6562 6583 ( 22 n); cDNA 465 486 ( 22 n); score: 0.636 Intron 2 6584 8325 (1742 n); Pd: 0.954 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 8326 8454 ( 129 n); cDNA 487 615 ( 129 n); score: 0.953 PPA cDNA 722 739 MATCH C09HBa0168F14.1-2+ SGN-E369423- 0.953 199 0.269 C PGS_C09HBa0168F14.1-2+_SGN-E369423- (6111 6158,6562 6583,8326 8454) Alignment (genomic DNA sequence = upper lines): GATGATCATG ATCATGATCA TGATGATCAA GATCAAGATT ATCAAGGGGT TAGTCCAACA 6170 |||||||| | | || || | || || || | | |||| | GATGATCAAG CTGATAAT-- TTATAAT-AA ACTTACCTCA TTCAAAGA.. .......... 464 AGTGCTAAAT CATCAAAAAA GATGGGAACA TTTGCAGTGT ATGTAGGGGA AGAAAGGGAG 6230 .......... .......... .......... .......... .......... .......... 464 CGATTCGCGG TGCCAACGAG CTATCTTTCA CATCCATTGT TCAAGATTTT GTTGGAGAAG 6290 .......... .......... .......... .......... .......... .......... 464 ACATATAATG AGTTTGGTTT TGAGCAAACA AATGGACTTG TGGTTCCATG TAGTGTTGCT 6350 .......... .......... .......... .......... .......... .......... 464 GCATTTCAAG AAGTGGTCAA TGCTGTGGAG TGTTGCAATG GGAAGTTTGA TTTTGGTGGC 6410 .......... .......... .......... .......... .......... .......... 464 TTGGTTGAGG AATTTCTATA ATTAGGTCTA TATTATTCAA GGTCTTATAT ATTCACAACT 6470 .......... .......... .......... .......... .......... .......... 464 ACGTACAACG TTTCAGTCTC GAACAAGTTG GAATCAATTA CTTTTCTAAC TAGAGTGAAA 6530 .......... .......... .......... .......... .......... .......... 464 AAATAGCATT TGGTGAAATA GATTTTAAAA GGATTAAATC ATATATTAAG GAGGTAATTT 6590 || |||| |||||| | | .......... .......... .......... .ATTTGAATC ATATATGTAA ACG....... 486 ACAATTTAAA GTCTTAGTTA CTTTTGTACC AAAGAGATAG TGTAAATTAT TACACCTTTA 6650 .......... .......... .......... .......... .......... .......... 486 ATATCATAGG TAATTAAGCT TCCTTTTGTG TTTTTTTTCC CATGAGGAGA AATATCAATT 6710 .......... .......... .......... .......... .......... .......... 486 GAGAGAAGTA AATCTTGTTG TTTATCAACT AGCTAAATTG TAAAATTTAA GTGACCAGAC 6770 .......... .......... .......... .......... .......... .......... 486 CAATTGAAAG AGAAATGTAA TTGTTAATTA TTTACTTTTT GCCCTTTCAA ATACATTAAG 6830 .......... .......... .......... .......... .......... .......... 486 TGGTACATTA AGACCACTTT GAGAATGTTT AAACTCGTTC AAACAGTCAG TCTCAGAGTT 6890 .......... .......... .......... .......... .......... .......... 486 AAAGTCGAAG TCAGATAAAA AAAAATAGTT ATGTAAGCTG ATATTTACCT TAAATAAACT 6950 .......... .......... .......... .......... .......... .......... 486 AAGGATGTAC ACTTCTATCG TTTTAATCTC GCTCCTCACC TTGTTTTTCT TGTCATTTCA 7010 .......... .......... .......... .......... .......... .......... 486 CATGGGCGAA AGACTTTTTT TTTTTAGATT CGATATAGAA ATGGAATGTA GTTATTAGTC 7070 .......... .......... .......... .......... .......... .......... 486 ATAGTTATCA AGTCAAAAGG GTTTTCTAAT TAGTCAAAAT GGATTATTGG TAGTTTGATT 7130 .......... .......... .......... .......... .......... .......... 486 ATCATCAAGA GGTGCATGCA TGTTATACAA TTATTTAATT TTGACTTGGT CAAAAATTAG 7190 .......... .......... .......... .......... .......... .......... 486 ATACTGAACA TAGTGGTAAC CACATTTACC AAAAAAAACA AAACAAAAAA AGTACTAATT 7250 .......... .......... .......... .......... .......... .......... 486 GGATGCATGT TGGTTGAAGT TAGCAGCATT TTTAGTAGTT AGGTGATAAA TTAGAGCCAC 7310 .......... .......... .......... .......... .......... .......... 486 AAATGACTCA TGGAATGTTT TTAATTTTGT AATTTTCGAA AGAGTTTATG TTATCTGCAC 7370 .......... .......... .......... .......... .......... .......... 486 TGTCAGTATA TCAATCACAT TAAGTTCACC TGGAGAATAG AAGAGTAACC TGCTATAATC 7430 .......... .......... .......... .......... .......... .......... 486 AGTTAAATTT TGACATGATG TAAAATTTCG TTTACATCGT CAACGGCTCA CACATAAACT 7490 .......... .......... .......... .......... .......... .......... 486 CAGCATCTTT TAAAACAAGC AGAAAAAGAA CCAAGAACTT GAAACTTTTG ATGTCAAAAA 7550 .......... .......... .......... .......... .......... .......... 486 CAAACAACTT ACTGCATTTT CATTGAACAT GATGAGTGGG AAAATATAGT GTTTGTTTTA 7610 .......... .......... .......... .......... .......... .......... 486 GTAATATACT AGCAGTCAAT AAGGATTTTT TTCATTTCAC CAATGAGCTC CTGTATTTGC 7670 .......... .......... .......... .......... .......... .......... 486 TCTCTAGTAT GCAAGGGGAA GGGATAAACA CATGCACAAT CCAAATGTCC GTCCCTGATT 7730 .......... .......... .......... .......... .......... .......... 486 GTGTCGAATA TGGCAATAGA AGGGCCTACC CCATGCACGG ATGCACACCC GATGAAGTCT 7790 .......... .......... .......... .......... .......... .......... 486 TCTAATCCGA TTTCTTGATG CATTGTGCTG GAGGTATCGA TCACAGTGTC TTCAAACACG 7850 .......... .......... .......... .......... .......... .......... 486 GAGATCAGAG AAGTTCTAAG TGAAGAGGAT GGAGTTAAGC CGGGATTATC AATGGCCCTG 7910 .......... .......... .......... .......... .......... .......... 486 CACATGAGGA AATTCAGGTC TCCCATGTCT GTGAAATGCT TGTTATTGTT CTTGGCGTTG 7970 .......... .......... .......... .......... .......... .......... 486 ATAAAAGATG TGTAACTTCT CTTTGCTAGC TCCCATAAGT CATCTCCTCC CTTAACGTCA 8030 .......... .......... .......... .......... .......... .......... 486 TGCGTGTTGA GGATGGCAGA ATGATAAAAG CCTGCACGAT TTAGATCATT TTAATATGCT 8090 .......... .......... .......... .......... .......... .......... 486 CTGTTAAAGA ATGACAAAAG TCTCACATCG ATGATTAATG AGATGGGTGA ATTCTTTATA 8150 .......... .......... .......... .......... .......... .......... 486 AGGCTTAGGC AATCCTCCTC TCTTTGAGCT AGCTTTTGAG GTGTGAGTTA GGCCTAAGAC 8210 .......... .......... .......... .......... .......... .......... 486 CTAATTTCAC ATGGTATCAG AGCTGGGTCC GTCTCACCCG ATGTTGTGGT CCCCAAAATT 8270 .......... .......... .......... .......... .......... .......... 486 AAAATTGTCC ACGCACTGGG CGTAAAATTG TCCACGCACT GGGCGTGAGG TGGGGTGTTA 8330 ||||| .......... .......... .......... .......... .......... .....TGTTA 491 AAGAATGACA AAAGTCCCAC ATCGGTGATT AATGAGATGG GTGGACTCTT TATAAGGCTT 8390 || ||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATGACA AAAATCCCAC ATCGGTGATT AATGAGATGG GTGGACTCTT TATAAGGCTT 551 AGGCAATCCT CCTCCCTTTG AGCTAGCTTT TGGGGTGTGA GTTAGGCTTA AGACCTAATT 8450 ||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GGGCAATCCT CCTCCCTTTG AGCTAGCTTT TGGGGTGTGA GTTAGGCCTA AGACCTAATT 611 AAAC 8454 || TCAC 615 hqPGS_C09HBa0168F14.1-2+_SGN-E369423- (8326 8454) ******************************************************************************** EST sequence 47 +strand 689 n (File: SGN-E375169+) 1 AAAAATGGCA GAGCAGCTGA CGGAGGAGCA GATCGCTGAG TTCAAGGAAG CTTTTAGCCT 61 TTTCGACAAG GATGGCGATG GCTGTATTAC TACCAAGGAG TTGGGAACAG TGATGAGATC 121 ACTTGGTCAG AATCCCACTG AAGCTGAACT ACAGGATATG ATCAGTGAAG TTGATGCTGA 181 TCAGAATGGA ACCATTGATT TTCCAGAGTT CTTGAATCTG ATGGCACGGA AGATGAAGGT 241 ATAGGAGTAC TAGCTATTTG AATATTATGT TAGTCTTTCT TATTTGTACT TGTTTATCAA 301 CCCAATAACT TGTCGTATTT CAACTTTAAA ATATTGTGGG TGACTTTTGA GTCAACTGAT 361 CTTTGGGTCA AATATTAGTA TGCTATGGTC TGGATAGTTC CTAGATTCTT TCAGATTATT 421 CACGAAAAAC CTTGCTTTAA GTTCTGCATG CATCGAGACA ATCTCTCTTA TAGGAAAAGT 481 TGCTTACAGG CAGATGCCTT TGTAAACATC TGTTAAAGAA TGATAAAAGT CCCACATCGG 541 TAATTAATGA GATGGGTGGA CTCTTTATAA GGCTTGGACA ATCCTCCTCC CTTTGAGCTA 601 GCTTTTGGGG TGTGAGTTAG GCCTAAGACC TAATTTCACA ACATCCAAGT TACAATAATG 661 AGATAATACA ATTTTCAAGG GATCAATGA Predicted gene structure (within gDNA segment 2169 to 9701): Exon 1 8326 8454 ( 129 n); cDNA 511 639 ( 129 n); score: 0.946 MATCH C09HBa0168F14.1-2+ SGN-E375169+ 0.946 129 0.187 C PGS_C09HBa0168F14.1-2+_SGN-E375169+ (8326 8454) Alignment (genomic DNA sequence = upper lines): TGTTAAAGAA TGACAAAAGT CCCACATCGG TGATTAATGA GATGGGTGGA CTCTTTATAA 8385 |||||||||| ||| |||||| |||||||||| | |||||||| |||||||||| |||||||||| TGTTAAAGAA TGATAAAAGT CCCACATCGG TAATTAATGA GATGGGTGGA CTCTTTATAA 570 GGCTTAGGCA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAG GCTTAAGACC 8445 ||||| | || |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GGCTTGGACA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAG GCCTAAGACC 630 TAATTAAAC 8454 ||||| || TAATTTCAC 639 hqPGS_C09HBa0168F14.1-2+_SGN-E375169+ (8326 8454) ******************************************************************************** EST sequence 48 +strand 738 n (File: SGN-E375258+) 1 AAAAATGGCA GAGCAGCTGA CGGAGGAGCA GATCGCTGAG TTCAAGGAAG CTTTTAGCCT 61 TTTCGACAAG GATGGCGATG GCTGTATTAC TACCAAGGAG TTGGGAACAG TGATGAGATC 121 ACTTGGTCAG AATCCCACTG AAGCTGAACT ACAGGATATG ATCAGTGAAG TTGATGCTGA 181 TCAGAATGGA ACCATTGATT TTCCAGAGTT CTTGAATCTG ATGGCACGGA AGATGAAGGT 241 ATAGGAGTAC TAGCTATTTG AATATTATGT TAGTCTTTCT TATTTGTACT TGTTTATCAA 301 CCCAATAACT TGTCGTATTT CAACTTTAAA ATATTGTGGG TGACTTTTGA GTCAACTGAT 361 CTTTGGGTCA AATATTAGTA TGCTATGGTC TGGATAGTTC CTAGATTCTT TCAGATTATT 421 CACGAAAAAC CTTGCTTTAA GTTCTGCATG CATCGAGACA ATCTCTCTTA TAGGAAAAGT 481 TGCTTACAGG CAGATGCCTT TGTAAACATC TGTTAAAGAA TGATAAAAGT CCCACATCGG 541 TAATTAATGA GATGGGTGGA CTCTTTATAA GGCTTGGACA ATCCTCCTCC CTTTGAGCTA 601 GCTTTTGGGG TGTGAGTTAN GCCTAAGACC TAATTTCACA ACATCCAAGT TACAATAATG 661 AGATAATACA ATTTTCAAGG GATCAATGAT TGGGTAATTC TTCCTTTTGT TCTTTTTTAG 721 CATTTCATTA TTGTTTTC Predicted gene structure (within gDNA segment 2169 to 10191): Exon 1 8326 8454 ( 129 n); cDNA 511 639 ( 129 n); score: 0.938 MATCH C09HBa0168F14.1-2+ SGN-E375258+ 0.938 129 0.175 C PGS_C09HBa0168F14.1-2+_SGN-E375258+ (8326 8454) Alignment (genomic DNA sequence = upper lines): TGTTAAAGAA TGACAAAAGT CCCACATCGG TGATTAATGA GATGGGTGGA CTCTTTATAA 8385 |||||||||| ||| |||||| |||||||||| | |||||||| |||||||||| |||||||||| TGTTAAAGAA TGATAAAAGT CCCACATCGG TAATTAATGA GATGGGTGGA CTCTTTATAA 570 GGCTTAGGCA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAG GCTTAAGACC 8445 ||||| | || |||||||||| |||||||||| |||||||||| ||||||||| || ||||||| GGCTTGGACA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAN GCCTAAGACC 630 TAATTAAAC 8454 ||||| || TAATTTCAC 639 hqPGS_C09HBa0168F14.1-2+_SGN-E375258+ (8326 8454) ******************************************************************************** EST sequence 49 +strand 719 n (File: SGN-E375189+) 1 AAAAATGGCA GAGCAGCTGA CGGAGGAGCA GATCGCTGAG TTCAAGGAAG CTTTTAGCCT 61 TTTCGACAAG GATGGCGATG GCTGTATTAC TACCAAGGAG TTGGGAACAG TGATGAGATC 121 ACTTGGTCAG AATCCCACTG AAGCTGAACT ACAGGATATG ATCAGTGAAG TTGATGCTGA 181 TCAGAATGGA ACCATTGATT TTCCAGAGTT CTTGAATCTG ATGGCACGGA AGATGAAGGT 241 ATAGGAGTAC TAGCTATTTG AATATTATGT TAGTCTTTCT TATTTGTACT TGTTTATCAA 301 CCCAATAACT TGTCGTATTT CAACTTTAAA ATATTGTGGG TGACTTTTGA GTCAACTGAT 361 CTTTGGGTCA AATATTAGTA TGCTATGGTC TGGATAGTTC CTAGATTCTT TCAGATTATT 421 CACGAAAAAC CTTGCTTTAA GTTCTGCATG CATCGAGACA ATCTCTCTTA TAGGAAAAGT 481 TGCTTACAGG CAGATGCCTT TGTAAACATC TGTTAAAGAA TGATAAAAGT CCCACATCGG 541 TAATTAATGA GATGGGTGGA CTCTTTATAA GGCTTGGACA ATCCTCCTCC CTTTGAGCTA 601 GCTTTTGGGG TGTGAGTTAN GCCTAAGACC TAATTTCACA ACATCCAAGT TACAATAATG 661 AGATAATACA ATTTTCAAGG GATCAATGAT TGGTTAATTC TTCCTTTTGT TCTTTTTTT Predicted gene structure (within gDNA segment 2169 to 10001): Exon 1 8326 8454 ( 129 n); cDNA 511 639 ( 129 n); score: 0.938 MATCH C09HBa0168F14.1-2+ SGN-E375189+ 0.938 129 0.179 C PGS_C09HBa0168F14.1-2+_SGN-E375189+ (8326 8454) Alignment (genomic DNA sequence = upper lines): TGTTAAAGAA TGACAAAAGT CCCACATCGG TGATTAATGA GATGGGTGGA CTCTTTATAA 8385 |||||||||| ||| |||||| |||||||||| | |||||||| |||||||||| |||||||||| TGTTAAAGAA TGATAAAAGT CCCACATCGG TAATTAATGA GATGGGTGGA CTCTTTATAA 570 GGCTTAGGCA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAG GCTTAAGACC 8445 ||||| | || |||||||||| |||||||||| |||||||||| ||||||||| || ||||||| GGCTTGGACA ATCCTCCTCC CTTTGAGCTA GCTTTTGGGG TGTGAGTTAN GCCTAAGACC 630 TAATTAAAC 8454 ||||| || TAATTTCAC 639 hqPGS_C09HBa0168F14.1-2+_SGN-E375189+ (8326 8454) ******************************************************************************** EST sequence 16 +strand 600 n (File: SGN-E250928+) 1 AAAAATGGCA GAGCAGCTGA CGGAGGAGCA GATCGCTGAG TTCAAGGAAG CTTTTAGCCT 61 TTTCGACAAG GATGGCGATG GCTGTATTAC TACCAAGGAG TTGGGAACAG TGATGAGATC 121 ACTTGGTCAG AATCCCACTG AAGCTGAACT ACAGGATATG ATCAGTGAAG TTGATGCTGA 181 TCAGAATGGA ACCATTGATT TTCCAGAGTT CTTGAATCTG ATGGCACGGA AGATGAAGGT 241 ATAGGAGTAC TAGCTATTTG AATATTATGT TAGTCTTTCT TATTTGTACT TGTTTATCAA 301 CCCAATAACT TGTCGTATTT CAACTTTAAA ATATTGTGGG TGACTTTTGA GTCAACTGAT 361 CTTTGGGTCA AATATTAGTA TGCTATGGTC TGGATAGTTC CTAGATTCTT TCAGATTATT 421 CACGAAAAAC CTTGCTTTAA GTTCTGCATG CATCGAGACA ATCTCTCTTA TAGGAAAAGT 481 TGCTTACAGG CAGATGCCTT TGTAAACATC TGTTAAAGAA TGATAAAAGT CCCACATCGG 541 TAATTAATGA GATGGGTGGA CTCTTTATAA GGCTTGGACA ATCCTCCTCC CTTTGAGCTA Predicted gene structure (within gDNA segment 2500 to 9025): Exon 1 8326 8415 ( 90 n); cDNA 511 600 ( 90 n); score: 0.956 MATCH C09HBa0168F14.1-2+ SGN-E250928+ 0.956 90 0.150 C PGS_C09HBa0168F14.1-2+_SGN-E250928+ (8326 8415) Alignment (genomic DNA sequence = upper lines): TGTTAAAGAA TGACAAAAGT CCCACATCGG TGATTAATGA GATGGGTGGA CTCTTTATAA 8385 |||||||||| ||| |||||| |||||||||| | |||||||| |||||||||| |||||||||| TGTTAAAGAA TGATAAAAGT CCCACATCGG TAATTAATGA GATGGGTGGA CTCTTTATAA 570 GGCTTAGGCA ATCCTCCTCC CTTTGAGCTA 8415 ||||| | || |||||||||| |||||||||| GGCTTGGACA ATCCTCCTCC CTTTGAGCTA 600 hqPGS_C09HBa0168F14.1-2+_SGN-E250928+ (8326 8415) ******************************************************************************** EST sequence 96 +strand 491 n (File: SGN-E238245+) 1 GGACAATCCT CCTCCCTTTG AGCTAGCTTT TGGGGTGTGA GTTAGGCCTA AGACCTAATT 61 TCACAACATC CAAGTTACAA TAATGAGATA ATACAATTTT CAAGGGATCA ATGATTGGTT 121 AATTCTTCCT TTTGTTCTTT TTTTAGCATT TCATTATTGT TTTCCCTTTG GATCTTATAT 181 AATTATGTTA AGGAGGACGG AAATATGCTT TCTTCATGGC TTGTCAAATA TGATTAATTG 241 CCAAATCTAG TAGTCTTGAG CTCAAATAAT CATATTTTAC ACTTGAGAAA AGAAATGTAC 301 ATAATTTGGA CTATTCTTGT GAAGGACACT GATTCTGAGG AAGAACTCAA AGAGGCTTTT 361 AAGGTTTTTG ATAAAGATCA GAATGGCTTT ATTTCTGCAG CTGAGGTACT TTTCTTATTT 421 TTTGCAAGTG ATTATGTGCG AAGTGTTATT TAACATGCTA ATAGTTTTTT TGGCAGCCAG 481 TATTATGGAC T Predicted gene structure (within gDNA segment 7919 to 14071): Exon 1 8539 8607 ( 69 n); cDNA 3 71 ( 69 n); score: 0.942 Intron 1 8608 9965 (1358 n); Pd: 0.000 (s: 0.92), Pa: 0.529 (s: 0) Exon 2 9966 9980 ( 15 n); cDNA 72 87 ( 16 n); score: 0.500 MATCH C09HBa0168F14.1-2+ SGN-E238245+ 0.942 84 0.171 C PGS_C09HBa0168F14.1-2+_SGN-E238245+ (8539 8607,9966 9980) Alignment (genomic DNA sequence = upper lines): ACAATCCTCC TCCCTTTGAG CTAGCTTTTG GGGTGTGAGT TAGGCCTAAG ACCTAATTTC 8598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATCCTCC TCCCTTTGAG CTAGCTTTTG GGGTGTGAGT TAGGCCTAAG ACCTAATTTC 62 ACATGCTCTG TTCAGTAAAC ATCACAATGC AGTAATCGAA ATGACCAAAA TAACAGAAGC 8658 ||| || ACAACATCC. .......... .......... .......... .......... .......... 71 TCACAATTAG TGAAATCTAG ATAAGCGGGA ACAATCAGCC TGAACCAGCT CAAAATGGGC 8718 .......... .......... .......... .......... .......... .......... 71 ATTTCAAACC AGTTTTGAGT TTAGAAGTCG GAGTTTTAAG ACTCGAGAAA GGCTGATAAG 8778 .......... .......... .......... .......... .......... .......... 71 ATACAACAAT AGCAATGAAA AGAAAAAGCT GAACAGAAGT GAGAGTTACA TCAAATGTAA 8838 .......... .......... .......... .......... .......... .......... 71 GAACAATCAC ATGGTACTGA CTACTGAAGT ATGGTGTACT TGCTCAAGTT AAAAGGGCTA 8898 .......... .......... .......... .......... .......... .......... 71 ATAGGATGTT TCCAGCAGAC TAAGGGTAAT TTGAGCTTTT CCAAGTACAT AGATAATGGG 8958 .......... .......... .......... .......... .......... .......... 71 CAACGAACTT GCAAGTCACA TATAGCAACT CTATTATTTA CCTTAAAAGG AATCCTTGCA 9018 .......... .......... .......... .......... .......... .......... 71 AACCAATACT TGACTCCCGA TTGAGTGTAC GTATGAGTTT ATAGATTGAC AGGTTCTCCC 9078 .......... .......... .......... .......... .......... .......... 71 TCCCTTAATA GGCTGAGGTT TTCTATTTAG TCTATAACAA TTACTATCAA AGCAACGCTT 9138 .......... .......... .......... .......... .......... .......... 71 GAGCACGAAA ATCAAAGAGG GGGTTCTAGA GTCTGTCATG TGTACTAGCC TTGATCAATT 9198 .......... .......... .......... .......... .......... .......... 71 GGGAGTAGTT ACCTGGACCT AAGAGTGTAC TAGCCTTGAC CAACTGGTAG AACATCAGTA 9258 .......... .......... .......... .......... .......... .......... 71 GCGGTACCAT TTATTATTAA CTTGGGTCCA AAAAGAAGAA AAAAAAGATC GGATACCAGT 9318 .......... .......... .......... .......... .......... .......... 71 AGACAGTAGT AACCAATGGG GTTAGATGGG TGTCAAGAGT GGAGGCCTCG GTACAAGAAA 9378 .......... .......... .......... .......... .......... .......... 71 TATAAAGACC CGATACAAGT AAGTTTTTAC CATGAATGCA TTAACGAACC TGGAAAATCA 9438 .......... .......... .......... .......... .......... .......... 71 GGGCTAAGCA CTGGATCAAG AATTGAACGG CAGTTAATAA GGGTTACAAT TGCATACTTC 9498 .......... .......... .......... .......... .......... .......... 71 TCCCATTGAT TCTCCTTTAG GCCTTTTAAG GAATGAGCTG CAATTAATCC AGCAGCAGCC 9558 .......... .......... .......... .......... .......... .......... 71 AATAGTCCAC ACAGTTTTAT ACCTCTCGTT TTACAGCCCT ACCAAAATTC AGATTTTGTT 9618 .......... .......... .......... .......... .......... .......... 71 ACTACCTCTA ATGCTCTAAA GTGCAAACAA TGTACATTTA GATAGGGAGT CGTAACCTGT 9678 .......... .......... .......... .......... .......... .......... 71 TGCTCAGACT CTTCAAAAAT GTTTTTCAGG TGCATTCGGA TAAAGTAATG TAATTTTTGA 9738 .......... .......... .......... .......... .......... .......... 71 AGATTTGACA TTGGCGAACA ACATTTTTGT AGTGTCGCAC ACACTTATCA CAGGCAGTTA 9798 .......... .......... .......... .......... .......... .......... 71 CATACAACTA ACTTCTAAAT AATGTGATCT TGCACTGTCG ATGTATAAAA TTTAAACCAT 9858 .......... .......... .......... .......... .......... .......... 71 TAATCAGGCT ATAAACCTGA TCTTAGTTGA GCCGAATTGG ATCTTTTGAT TTAACGGTAT 9918 .......... .......... .......... .......... .......... .......... 71 TAGTTTATAC CATTCTCGGT GAACAGAGTT GCTTGATACA CATGCAGATG -GAAAGTACT 9977 | | | | || | .......... .......... .......... .......... .......AAG TTACAATAAT 84 GAG 9980 ||| GAG 87 hqPGS_C09HBa0168F14.1-2+_SGN-E238245+ (8539 8607) ******************************************************************************** EST sequence 145 +strand 687 n (File: SGN-E327500+) 1 AAACCTCCGA TCTCACCTCC GTCTCCGATT TTCATCTCAT CCTCGAACAC GAAATCAACC 61 ACAACTCATG GATGAACACC GGCACTTCAT CAGATTCCGA CACGGATATC TTCTTCGCCA 121 GCATTTATCA ATTAGAAAAC GAAAAATCGG TGTTCGCTTT AAGGATTCAT ACATCGGTGT 181 GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT GAAGCTGGTG AGTTGTGAGA 241 AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA GATGGAGGTT GGTTTGGGGA 301 TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT TTGGGCGCGT GGGATTGATA 361 TGGTGGGGTA TGGTTTGAAT TCATTGAGAT TTTGTAATTT GAAGTTTATG GATTCGGAAT 421 CAACGAGAGG ATCACAAGTT GTGAAATTGC AGTTGAATAA ACAAGAGACT GATCACATTC 481 TTGATGGCTG TAAAACGAGA GGTATAAAAC TGTGTGGACT ATTGGCTGCT GCTGGATTAA 541 TTGCAGCTCA TTCCTTAAAA GGCCTAAAAG AGAATCAATG GGAGAAGTAT GCAATTGTAA 601 CCCTTATTAA CTGCCGTTCA ATTCTTGATC CAGTGCTTAG CCCTGATTTT CCAGGCTTTA 661 TCATTCTGCC ATCCTCACAC GCATGAC Predicted gene structure (within gDNA segment 12507 to 8497): Exon 1 11907 11423 ( 485 n); cDNA 1 485 ( 485 n); score: 1.000 Intron 1 11422 9597 (1826 n); Pd: 0.987 (s: 1.00), Pa: 0.968 (s: 1.00) Exon 2 9596 9428 ( 169 n); cDNA 486 654 ( 169 n); score: 0.994 MATCH C09HBa0168F14.1-2- SGN-E327500+ 0.998 654 0.952 C PGS_C09HBa0168F14.1-2-_SGN-E327500+ (11907 11423,9596 9428) Alignment (genomic DNA sequence = upper lines): AAACCTCCGA TCTCACCTCC GTCTCCGATT TTCATCTCAT CCTCGAACAC GAAATCAACC 11848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCTCCGA TCTCACCTCC GTCTCCGATT TTCATCTCAT CCTCGAACAC GAAATCAACC 60 ACAACTCATG GATGAACACC GGCACTTCAT CAGATTCCGA CACGGATATC TTCTTCGCCA 11788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACTCATG GATGAACACC GGCACTTCAT CAGATTCCGA CACGGATATC TTCTTCGCCA 120 GCATTTATCA ATTAGAAAAC GAAAAATCGG TGTTCGCTTT AAGGATTCAT ACATCGGTGT 11728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATTTATCA ATTAGAAAAC GAAAAATCGG TGTTCGCTTT AAGGATTCAT ACATCGGTGT 180 GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT GAAGCTGGTG AGTTGTGAGA 11668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT GAAGCTGGTG AGTTGTGAGA 240 AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA GATGGAGGTT GGTTTGGGGA 11608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA GATGGAGGTT GGTTTGGGGA 300 TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT TTGGGCGCGT GGGATTGATA 11548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT TTGGGCGCGT GGGATTGATA 360 TGGTGGGGTA TGGTTTGAAT TCATTGAGAT TTTGTAATTT GAAGTTTATG GATTCGGAAT 11488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGGGTA TGGTTTGAAT TCATTGAGAT TTTGTAATTT GAAGTTTATG GATTCGGAAT 420 CAACGAGAGG ATCACAAGTT GTGAAATTGC AGTTGAATAA ACAAGAGACT GATCACATTC 11428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGAGG ATCACAAGTT GTGAAATTGC AGTTGAATAA ACAAGAGACT GATCACATTC 480 TTGATGTAAG TTCTTCGCAT TTTAGTAAAT TTCTTACCTT TTTACGCATC TCGATTAATT 11368 ||||| TTGAT..... .......... .......... .......... .......... .......... 485 TCATTTTATT TATGATTTTG TTCATCGAGA CTTGATTAGA TAAGAAGAAA TCACATAGCA 11308 .......... .......... .......... .......... .......... .......... 485 CTTGTTAAGT CTTTGATAGT TTTTTTTGAC AACACATTAA TTTTAAACTT TTGCGCTTAT 11248 .......... .......... .......... .......... .......... .......... 485 TTCTTTTTTT TATAAATTTT ATGTTTATTA AGGCTTGATT AGATAAGAAG AGATCACATA 11188 .......... .......... .......... .......... .......... .......... 485 CTCACTCGTT TCAATTTGTT TATTTTGTTA TCTTTTTAGT CGTTTCAAAT AAGAACGACT 11128 .......... .......... .......... .......... .......... .......... 485 CTTTTTTCTT TTTTGGTTGA CCTCTCATTA ATTTTATTTT TCATGTGATA TGTTTACTCA 11068 .......... .......... .......... .......... .......... .......... 485 CAAGATTAAA AGTTATTTTG ATATATTTTA TATATCTTTA ATTTAAAATG ATAGGAATCG 11008 .......... .......... .......... .......... .......... .......... 485 ATTTCTAAAA CTATATTTTA AATTATAATC AGATAAATAA ATTGAAACGG GAATAGTGTT 10948 .......... .......... .......... .......... .......... .......... 485 TTTCTTAAGC TTCCTTAATT TAGAGCAAGA TAGTGATATT CCTTTTTTTC TCTTTCAATA 10888 .......... .......... .......... .......... .......... .......... 485 AATTTAATTG TCAGTGTGTT AAATATATAT TTGATAATTG ATAGAGAAAC ACTAATGTTT 10828 .......... .......... .......... .......... .......... .......... 485 TACAAACTTA AAGAATTTAA AACTTTTAAA ATACTATATT TAAGGAAGTA TGTTAAGCCT 10768 .......... .......... .......... .......... .......... .......... 485 ATCTAAATTA AAAGGATTAT TTTTGTCATT TTCTCGATGT ATGGTGTGTT GTCTTTAATC 10708 .......... .......... .......... .......... .......... .......... 485 ATATATTTTT CTGACTTTAT CATAATTAAT TATAATTTCC TTAGTATTAT TTGATAATGT 10648 .......... .......... .......... .......... .......... .......... 485 ATATTTTTCT CACTTAATCA TAAATTAATT ATAATATCCT TAGTGGTATA TTAAAAATAT 10588 .......... .......... .......... .......... .......... .......... 485 GAAAATAGAT ATTATGGTTG AAATTTAAGT GGAGACAATA CATTAGATGA TTCAAATTTC 10528 .......... .......... .......... .......... .......... .......... 485 TTTCTCTAGT ATTGAAATCG AATTGGCAGA AAGTACCGAA AGTCGGCCTC CCGCCCTATC 10468 .......... .......... .......... .......... .......... .......... 485 ATCCCGTGTC TCAACCAATT TTTTTCTTGT CTCCAAATCT CTCTTTTGGC TTTTGAAACT 10408 .......... .......... .......... .......... .......... .......... 485 TTGATTCGGT GCCTAAATTT TGATCGATAA AGTTATCTGG TATTTACCTA GATGGCAAAT 10348 .......... .......... .......... .......... .......... .......... 485 AGTAGGTATC TAATTGATAA CGTTTGCAAA CTGAGTTGAA CATCATCGTC ATACAAAAAT 10288 .......... .......... .......... .......... .......... .......... 485 AGATTTAAAT GTCATTTTCA AATTGTCAAG TTAGGTTGAC ATTTTATTTT CATTTTCTTT 10228 .......... .......... .......... .......... .......... .......... 485 AGAAATTAGG CAAAGCTACT CTATGAAAAC TTGCTTGGCC CAATTTTCTT TTTTAGGTTA 10168 .......... .......... .......... .......... .......... .......... 485 GTCTCATTTA TGGCCCTCAT TGAATATTCT CTTCACATGA TGTCCAACTT TAATCATATT 10108 .......... .......... .......... .......... .......... .......... 485 TGAATTGTGA ATTGGCCAAT TTGCATGCTA CATCTTTCAC ATGACTAGAA TCTGGCCTGA 10048 .......... .......... .......... .......... .......... .......... 485 TTGTGAGTAA TGATATTACT AATTTTTCTA AAAATAACTC GTGGTGTTCG GGTCGACTAG 9988 .......... .......... .......... .......... .......... .......... 485 TGGTTACCTC AGTACTTTCC ATCTGCATGT GTATCAAGCA ACTCTGTTCA CCGAGAATGG 9928 .......... .......... .......... .......... .......... .......... 485 TATAAACTAA TACCGTTAAA TCAAAAGATC CAATTCGGCT CAACTAAGAT CAGGTTTATA 9868 .......... .......... .......... .......... .......... .......... 485 GCCTGATTAA TGGTTTAAAT TTTATACATC GACAGTGCAA GATCACATTA TTTAGAAGTT 9808 .......... .......... .......... .......... .......... .......... 485 AGTTGTATGT AACTGCCTGT GATAAGTGTG TGCGACACTA CAAAAATGTT GTTCGCCAAT 9748 .......... .......... .......... .......... .......... .......... 485 GTCAAATCTT CAAAAATTAC ATTACTTTAT CCGAATGCAC CTGAAAAACA TTTTTGAAGA 9688 .......... .......... .......... .......... .......... .......... 485 GTCTGAGCAA CAGGTTACGA CTCCCTATCT AAATGTACAT TGTTTGCACT TTAGAGCATT 9628 .......... .......... .......... .......... .......... .......... 485 AGAGGTAGTA ACAAAATCTG AATTTTGGTA GGGCTGTAAA ACGAGAGGTA TAAAACTGTG 9568 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGCTGTAAA ACGAGAGGTA TAAAACTGTG 514 TGGACTATTG GCTGCTGCTG GATTAATTGC AGCTCATTCC TTAAAAGGCC TAAAGGAGAA 9508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| TGGACTATTG GCTGCTGCTG GATTAATTGC AGCTCATTCC TTAAAAGGCC TAAAAGAGAA 574 TCAATGGGAG AAGTATGCAA TTGTAACCCT TATTAACTGC CGTTCAATTC TTGATCCAGT 9448 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATGGGAG AAGTATGCAA TTGTAACCCT TATTAACTGC CGTTCAATTC TTGATCCAGT 634 GCTTAGCCCT GATTTTCCAG 9428 |||||||||| |||||||||| GCTTAGCCCT GATTTTCCAG 654 hqPGS_C09HBa0168F14.1-2-_SGN-E327500+ (11907 11423,9596 9428) ******************************************************************************** EST sequence 187 +strand 229 n (File: SGN-E268607+) 1 AAGGATTCAT ACATCGGTGT GTGATCGGGC GGGTGCATTG GGGGTGCTGA AGAAGTTATT 61 GAAGCTGGTG AGTTGTGAGA AGGAAGATGA ATAATGGACA GAATTGGAAA TATTGAAAAA 121 GATGGAGGTT GGTTTGGGGA TTGAAGAGTA TATTCCAAAT GGTAAAGCGA GTGAACCATT 181 TTGGGCGCGT GGGATTGATA TGGTGGGGTA TGGTTGGAAT TCATTGAAA Predicted gene structure (within gDNA segment 12347 to 10783): Exon 1 11747 11521 ( 227 n); cDNA 1 227 ( 227 n); score: 0.969 MATCH C09HBa0168F14.1-2- SGN-E268607+ 0.969 227 0.991 C PGS_C09HBa0168F14.1-2-_SGN-E268607+ (11747 11521) Alignment (genomic DNA sequence = upper lines): AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT 11688 |||||||||| |||||||||| |||||||||| || ||||||| | |||||||| |||||||||| AAGGATTCAT ACATCGGTGT GTGATCGGGC GGGTGCATTG GGGGTGCTGA AGAAGTTATT 60 GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA 11628 |||||||||| |||||||||| |||||||||| | || ||||| |||||||||| |||||||||| GAAGCTGGTG AGTTGTGAGA AGGAAGATGA ATAATGGACA GAATTGGAAA TATTGAAAAA 120 GATGGAGGTT GGTTTGGGGA TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT 11568 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| GATGGAGGTT GGTTTGGGGA TTGAAGAGTA TATTCCAAAT GGTAAAGCGA GTGAACCATT 180 TTGGGCGCGT GGGATTGATA TGGTGGGGTA TGGTTTGAAT TCATTGA 11521 |||||||||| |||||||||| |||||||||| ||||| |||| ||||||| TTGGGCGCGT GGGATTGATA TGGTGGGGTA TGGTTGGAAT TCATTGA 227 hqPGS_C09HBa0168F14.1-2-_SGN-E268607+ (11747 11521) ******************************************************************************** EST sequence 254 +strand 219 n (File: SGN-E370074+) 1 AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT 61 GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA 121 GATGGAGGTT GGTTTGGGGA TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT 181 TTGGGCGCGT GGGATTGATA TGGTGGGGTA TGGTTTGAA Predicted gene structure (within gDNA segment 12347 to 10919): Exon 1 11747 11529 ( 219 n); cDNA 1 219 ( 219 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E370074+ 1.000 219 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E370074+ (11747 11529) Alignment (genomic DNA sequence = upper lines): AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT 11688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA AGAAGTTATT 60 GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA 11628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA TATTGAAAAA 120 GATGGAGGTT GGTTTGGGGA TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT 11568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGAGGTT GGTTTGGGGA TTGAAGAGTA TATTCCAGAT GGTAAAGCGA GTAAACCATT 180 TTGGGCGCGT GGGATTGATA TGGTGGGGTA TGGTTTGAA 11529 |||||||||| |||||||||| |||||||||| ||||||||| TTGGGCGCGT GGGATTGATA TGGTGGGGTA TGGTTTGAA 219 hqPGS_C09HBa0168F14.1-2-_SGN-E370074+ (11747 11529) ******************************************************************************** EST sequence 224 +strand 633 n (File: SGN-E311377+) 1 TCTCAGTAAT GGCTGAGCAA GGAAGCGCCG CCGCAGCTCC GTCGTCTGAG TTGAAAAGTC 61 GGCCGGCCGG AAGCACCGAG CACAGCTGGT GCAAGGCGGT TCCCGGTGGC ACAGGTATAA 121 CAGTCTTAGC TCTACTCTTG TCAAAACCAC CAGACATTTC ACTTCTCCAA AATGCCCTTC 181 ACAAACTCCA AAATTCCAAT CCTATCCTCA AATCTCAACT CCATTACGAA TCAAGCACAA 241 ATTCCTACTC TTACATCATT CCCTCCACTT CTCATCTTCA AATCCAGCCG TTCGATCTCT 301 CATCAACGGT TCAGATTCTC CGACGCCTCA AAACCTCCGA TCTCACCTCC GTCTCCGATT 361 TTCATCTCAT CCTCGAACAC GAAATCAACC ACAACTCATG GATGAACACC GGCACTTCAT 421 CAGATTCCGA CACGGATATC TTCTTCGCCA GCATTTATCA ATTAGAAAAC GAAAAATCGG 481 TGTTCGCTTT AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA 541 AGAAGTTATT GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA 601 TATTGAAAAA GATGGAGGTT GGTTTGGGGA TTG Predicted gene structure (within gDNA segment 12837 to 10995): Exon 1 12237 11605 ( 633 n); cDNA 1 633 ( 633 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E311377+ 1.000 633 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E311377+ (12237 11605) Alignment (genomic DNA sequence = upper lines): TCTCAGTAAT GGCTGAGCAA GGAAGCGCCG CCGCAGCTCC GTCGTCTGAG TTGAAAAGTC 12178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCAGTAAT GGCTGAGCAA GGAAGCGCCG CCGCAGCTCC GTCGTCTGAG TTGAAAAGTC 60 GGCCGGCCGG AAGCACCGAG CACAGCTGGT GCAAGGCGGT TCCCGGTGGC ACAGGTATAA 12118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCGGCCGG AAGCACCGAG CACAGCTGGT GCAAGGCGGT TCCCGGTGGC ACAGGTATAA 120 CAGTCTTAGC TCTACTCTTG TCAAAACCAC CAGACATTTC ACTTCTCCAA AATGCCCTTC 12058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTTAGC TCTACTCTTG TCAAAACCAC CAGACATTTC ACTTCTCCAA AATGCCCTTC 180 ACAAACTCCA AAATTCCAAT CCTATCCTCA AATCTCAACT CCATTACGAA TCAAGCACAA 11998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAACTCCA AAATTCCAAT CCTATCCTCA AATCTCAACT CCATTACGAA TCAAGCACAA 240 ATTCCTACTC TTACATCATT CCCTCCACTT CTCATCTTCA AATCCAGCCG TTCGATCTCT 11938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCTACTC TTACATCATT CCCTCCACTT CTCATCTTCA AATCCAGCCG TTCGATCTCT 300 CATCAACGGT TCAGATTCTC CGACGCCTCA AAACCTCCGA TCTCACCTCC GTCTCCGATT 11878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAACGGT TCAGATTCTC CGACGCCTCA AAACCTCCGA TCTCACCTCC GTCTCCGATT 360 TTCATCTCAT CCTCGAACAC GAAATCAACC ACAACTCATG GATGAACACC GGCACTTCAT 11818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCTCAT CCTCGAACAC GAAATCAACC ACAACTCATG GATGAACACC GGCACTTCAT 420 CAGATTCCGA CACGGATATC TTCTTCGCCA GCATTTATCA ATTAGAAAAC GAAAAATCGG 11758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGATTCCGA CACGGATATC TTCTTCGCCA GCATTTATCA ATTAGAAAAC GAAAAATCGG 480 TGTTCGCTTT AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA 11698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCGCTTT AAGGATTCAT ACATCGGTGT GTGATCGGGC GGCTGCATTG GCGGTGCTGA 540 AGAAGTTATT GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA 11638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGTTATT GAAGCTGGTG AGTTGTGAGA AGGAAGATGA AGAAGGGACA GAATTGGAAA 600 TATTGAAAAA GATGGAGGTT GGTTTGGGGA TTG 11605 |||||||||| |||||||||| |||||||||| ||| TATTGAAAAA GATGGAGGTT GGTTTGGGGA TTG 633 hqPGS_C09HBa0168F14.1-2-_SGN-E311377+ (12237 11605) ******************************************************************************** EST sequence 136 +strand 467 n (File: SGN-E269714+) 1 GCTGAGCAAG GAAGCGCCGC CGCAGCTCCG TCGTCTGAGT TGAAAAGTCG GCCGGCCGGA 61 AGCACCGAGC ACAGCTGGTG CAAGGCGGTT CCCGGTGGCA CAGGTATAAC AGTCTTAGCT 121 CTACTCTTGT CAAAACCACC AGACATTTCA CTTCTCCAAA ATGCCCTTCA CAAACTCCAA 181 AATTCCAATC CTATCCTCAA ATCTCAACTC CATTACGAAT CAAGCACAAA TTCCTACTCT 241 TACATCATTC CCTCCACTTC TCATCTTCAA ATCCAGCCGT TCGATCTCTC ATCAACGGTT 301 CAGATTCTCC GACGCCTCAA AACCTCCGAT CTCACCTGCG TCTCCGATTT TCATCTCATC 361 CTCGAACACG AAATCAACCA CAACTCATGG ATGAACACCG GCACTTCATC AGATTCCGAC 421 ACGGATATCT TCTTCGCCAG CATTTATCAA TTAGAAAACG AAAAATC Predicted gene structure (within gDNA segment 12826 to 11150): Exon 1 12226 11760 ( 467 n); cDNA 1 467 ( 467 n); score: 0.998 MATCH C09HBa0168F14.1-2- SGN-E269714+ 0.998 467 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E269714+ (12226 11760) Alignment (genomic DNA sequence = upper lines): GCTGAGCAAG GAAGCGCCGC CGCAGCTCCG TCGTCTGAGT TGAAAAGTCG GCCGGCCGGA 12167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGCAAG GAAGCGCCGC CGCAGCTCCG TCGTCTGAGT TGAAAAGTCG GCCGGCCGGA 60 AGCACCGAGC ACAGCTGGTG CAAGGCGGTT CCCGGTGGCA CAGGTATAAC AGTCTTAGCT 12107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACCGAGC ACAGCTGGTG CAAGGCGGTT CCCGGTGGCA CAGGTATAAC AGTCTTAGCT 120 CTACTCTTGT CAAAACCACC AGACATTTCA CTTCTCCAAA ATGCCCTTCA CAAACTCCAA 12047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTCTTGT CAAAACCACC AGACATTTCA CTTCTCCAAA ATGCCCTTCA CAAACTCCAA 180 AATTCCAATC CTATCCTCAA ATCTCAACTC CATTACGAAT CAAGCACAAA TTCCTACTCT 11987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCCAATC CTATCCTCAA ATCTCAACTC CATTACGAAT CAAGCACAAA TTCCTACTCT 240 TACATCATTC CCTCCACTTC TCATCTTCAA ATCCAGCCGT TCGATCTCTC ATCAACGGTT 11927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATCATTC CCTCCACTTC TCATCTTCAA ATCCAGCCGT TCGATCTCTC ATCAACGGTT 300 CAGATTCTCC GACGCCTCAA AACCTCCGAT CTCACCTCCG TCTCCGATTT TCATCTCATC 11867 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CAGATTCTCC GACGCCTCAA AACCTCCGAT CTCACCTGCG TCTCCGATTT TCATCTCATC 360 CTCGAACACG AAATCAACCA CAACTCATGG ATGAACACCG GCACTTCATC AGATTCCGAC 11807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGAACACG AAATCAACCA CAACTCATGG ATGAACACCG GCACTTCATC AGATTCCGAC 420 ACGGATATCT TCTTCGCCAG CATTTATCAA TTAGAAAACG AAAAATC 11760 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACGGATATCT TCTTCGCCAG CATTTATCAA TTAGAAAACG AAAAATC 467 hqPGS_C09HBa0168F14.1-2-_SGN-E269714+ (12226 11760) ******************************************************************************** EST sequence 233 +strand 468 n (File: SGN-E208592+) 1 ATGGCTGAGC AAGGAAGCGC CGCCGCAGCT CCGTCGTCTG AGTTGAAAAG TCGGCCGGCC 61 GGAAGCACCG AGCACAGCTG GTGCAAGGCG GTTTCCGGTG GCACAGGTAT AACAGTCTTA 121 GCTCTACTCT TGTCAAAACC ACCAGACATT TCACTTCTCC AAAATGCCCT TCACAAACTC 181 CAAAATTCCA ATCCTATCCT CAAATCTCAA CTCCATTACG AATCAAGCAC AAATTGCTAC 241 TCTTACATCA TTCCCTCCAC TTCTCATCTT CAAATCCAGC CGTTCGATCT CTCATCAACG 301 GTTCAGATTC TTCGACGCCT CAAAACCTAC GATCTCACCT CCGTCTCCGA TTTTCATCTC 361 ATCCTCGAAC ACGAAATCGA CCACAACTCA TGGATGAACA CCGGCACTTC ATCAGATTCC 421 GACACGGATA TCTTTTTCGC CAGCATTTAT CAATTAGAAA ACGAAAAA Predicted gene structure (within gDNA segment 12829 to 11152): Exon 1 12229 11762 ( 468 n); cDNA 1 468 ( 468 n); score: 0.987 MATCH C09HBa0168F14.1-2- SGN-E208592+ 0.987 468 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E208592+ (12229 11762) Alignment (genomic DNA sequence = upper lines): ATGGCTGAGC AAGGAAGCGC CGCCGCAGCT CCGTCGTCTG AGTTGAAAAG TCGGCCGGCC 12170 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTGAGC AAGGAAGCGC CGCCGCAGCT CCGTCGTCTG AGTTGAAAAG TCGGCCGGCC 60 GGAAGCACCG AGCACAGCTG GTGCAAGGCG GTTCCCGGTG GCACAGGTAT AACAGTCTTA 12110 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GGAAGCACCG AGCACAGCTG GTGCAAGGCG GTTTCCGGTG GCACAGGTAT AACAGTCTTA 120 GCTCTACTCT TGTCAAAACC ACCAGACATT TCACTTCTCC AAAATGCCCT TCACAAACTC 12050 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTACTCT TGTCAAAACC ACCAGACATT TCACTTCTCC AAAATGCCCT TCACAAACTC 180 CAAAATTCCA ATCCTATCCT CAAATCTCAA CTCCATTACG AATCAAGCAC AAATTCCTAC 11990 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| CAAAATTCCA ATCCTATCCT CAAATCTCAA CTCCATTACG AATCAAGCAC AAATTGCTAC 240 TCTTACATCA TTCCCTCCAC TTCTCATCTT CAAATCCAGC CGTTCGATCT CTCATCAACG 11930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTACATCA TTCCCTCCAC TTCTCATCTT CAAATCCAGC CGTTCGATCT CTCATCAACG 300 GTTCAGATTC TCCGACGCCT CAAAACCTCC GATCTCACCT CCGTCTCCGA TTTTCATCTC 11870 |||||||||| | |||||||| |||||||| | |||||||||| |||||||||| |||||||||| GTTCAGATTC TTCGACGCCT CAAAACCTAC GATCTCACCT CCGTCTCCGA TTTTCATCTC 360 ATCCTCGAAC ACGAAATCAA CCACAACTCA TGGATGAACA CCGGCACTTC ATCAGATTCC 11810 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ATCCTCGAAC ACGAAATCGA CCACAACTCA TGGATGAACA CCGGCACTTC ATCAGATTCC 420 GACACGGATA TCTTCTTCGC CAGCATTTAT CAATTAGAAA ACGAAAAA 11762 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||| GACACGGATA TCTTTTTCGC CAGCATTTAT CAATTAGAAA ACGAAAAA 468 hqPGS_C09HBa0168F14.1-2-_SGN-E208592+ (12229 11762) ******************************************************************************** EST sequence 28 -strand 471 n (File: SGN-E264052-) 1 ACATCAGAAT CATTGGGTAG ATGTTCCTCC TACTCCCGGA GCTCTCGTGG TCAATATAGG 61 AGATATTCTA CAGCTTATAA CGAATGACAA GTTCAAAAGT GTTGATCATA GAGTACTGGC 121 TAATAAGGTC GGTCCAAGGG TATCGTTGGC ATGCTTCTTC ATGACAAACT TTGTGGCAAC 181 ACAAAGGCTG TATGGACCTA TAAAGGAGCT GATATCGGAA CAGAATCCTC CAAACTACAG 241 GGAAACGACG ATTAAGGAGT TCACAACTCA TTTCAATAAC AAAGGGCTGG ATGGCACTTC 301 CACTCTGTTG CATTTTAGAC TTTAGACTAA ATTGTTCAAA TAAGGTTTTG TAATACTATA 361 TATGTCAAAC TAAGTATGCT CATTATGTAA CCATCAATAA ATTCTACTCA TAGTAAGTAA 421 TTTTCATGAT TATGTTTAGA TTAAAAAAAA AAAAAAAAAA AGACTAGTTC T Predicted gene structure (within gDNA segment 14471 to 12451): Exon 1 13861 13789 ( 73 n); cDNA 1 73 ( 73 n); score: 1.000 Intron 1 13788 13710 ( 79 n); Pd: 1.000 (s: 1.00), Pa: 0.897 (s: 1.00) Exon 2 13709 13341 ( 369 n); cDNA 74 442 ( 369 n); score: 1.000 PPA cDNA 443 463 MATCH C09HBa0168F14.1-2- SGN-E264052- 1.000 442 0.938 C PGS_C09HBa0168F14.1-2-_SGN-E264052- (13861 13789,13709 13341) Alignment (genomic DNA sequence = upper lines): ACATCAGAAT CATTGGGTAG ATGTTCCTCC TACTCCCGGA GCTCTCGTGG TCAATATAGG 13802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCAGAAT CATTGGGTAG ATGTTCCTCC TACTCCCGGA GCTCTCGTGG TCAATATAGG 60 AGATATTCTA CAGGCAAGTA GTGTTACATT TAAACATATA CCTGTATCAG AAACATACAT 13742 |||||||||| ||| AGATATTCTA CAG....... .......... .......... .......... .......... 73 TTCTTATCAC TTATGAACTC GATCATTTTC AGCTTATAAC GAATGACAAG TTCAAAAGTG 13682 |||||||| |||||||||| |||||||||| .......... .......... .......... ..CTTATAAC GAATGACAAG TTCAAAAGTG 101 TTGATCATAG AGTACTGGCT AATAAGGTCG GTCCAAGGGT ATCGTTGGCA TGCTTCTTCA 13622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCATAG AGTACTGGCT AATAAGGTCG GTCCAAGGGT ATCGTTGGCA TGCTTCTTCA 161 TGACAAACTT TGTGGCAACA CAAAGGCTGT ATGGACCTAT AAAGGAGCTG ATATCGGAAC 13562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAAACTT TGTGGCAACA CAAAGGCTGT ATGGACCTAT AAAGGAGCTG ATATCGGAAC 221 AGAATCCTCC AAACTACAGG GAAACGACGA TTAAGGAGTT CACAACTCAT TTCAATAACA 13502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCCTCC AAACTACAGG GAAACGACGA TTAAGGAGTT CACAACTCAT TTCAATAACA 281 AAGGGCTGGA TGGCACTTCC ACTCTGTTGC ATTTTAGACT TTAGACTAAA TTGTTCAAAT 13442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGCTGGA TGGCACTTCC ACTCTGTTGC ATTTTAGACT TTAGACTAAA TTGTTCAAAT 341 AAGGTTTTGT AATACTATAT ATGTCAAACT AAGTATGCTC ATTATGTAAC CATCAATAAA 13382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTTTGT AATACTATAT ATGTCAAACT AAGTATGCTC ATTATGTAAC CATCAATAAA 401 TTCTACTCAT AGTAAGTAAT TTTCATGATT ATGTTTAGAT T 13341 |||||||||| |||||||||| |||||||||| |||||||||| | TTCTACTCAT AGTAAGTAAT TTTCATGATT ATGTTTAGAT T 442 hqPGS_C09HBa0168F14.1-2-_SGN-E264052- (13861 13789,13709 13341) ******************************************************************************** EST sequence 234 +strand 737 n (File: SGN-E344752+) 1 TTTTACTTCA AATATCAGCT AAGAAAAAAA TGGAGTTGAT CAACACAACT GAAGTCCAGG 61 TTCCAAGAGA AGCAAAGTAT GACAGGAAGG CTGAACTACA AGCTTTTGAT GAGACGAAAA 121 CCGGTGTTAA GGGACTAGTC GATACAGGTA TCACTAAAGT ACCAAGAATG TTTGTTCAAC 181 CGTCAAGGAT TGAAGATTCA ACAATTCACA GCAACAAGAA GTTCAGTTTT CCAATAATTG 241 ATCTTGATGG TATCAAGGAA AATTCGATCA AACGAAAGAA CATAGTCCAG GAAGTCGGTC 301 AAGCATCCGA GACTTGGGGA TTCTTTCAAG TGATCAATCA TGGGATTCCT AGTCATCTTC 361 TGGAGGAAAT GAAAGACGGT GTTCTCAGTT TCTTTGAACA AGATACCGAG GAGAAGAAAC 421 AGTGGTATAC GCGAGATTTG ACAAAAGTGT TTACGTTTAA CAGCAATTTC GACCTGTTTG 481 GAGCACCAGT AACCAACTGG AGAGACACTT TTACTGCTAC CACAGCTCCT ATACCTCCAA 541 AACCTGAAGA ATTACCTTCT GTTTGCAGGG ATGTTCTCCT TGAGTACACA AACCAAGTGA 601 TGAAATTAGG TGATACTCTA TTTGAAATAC TGGCTGAAGC TATTGGCCTC GAACCAAATA 661 CCTCAGGACA TGGGGTTGTG CCGAGGGGCT AATGGCGTTA GGCCATTATT ATCCAGCATG 721 CCCACACCAG AACTAAC Predicted gene structure (within gDNA segment 15432 to 13232): Exon 1 14832 14265 ( 568 n); cDNA 1 568 ( 568 n); score: 1.000 Intron 1 14264 14111 ( 154 n); Pd: 1.000 (s: 1.00), Pa: 0.922 (s: 1.00) Exon 2 14110 13940 ( 171 n); cDNA 569 737 ( 169 n); score: 0.962 MATCH C09HBa0168F14.1-2- SGN-E344752+ 0.991 739 1.003 C PGS_C09HBa0168F14.1-2-_SGN-E344752+ (14832 14265,14110 13940) Alignment (genomic DNA sequence = upper lines): TTTTACTTCA AATATCAGCT AAGAAAAAAA TGGAGTTGAT CAACACAACT GAAGTCCAGG 14773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTACTTCA AATATCAGCT AAGAAAAAAA TGGAGTTGAT CAACACAACT GAAGTCCAGG 60 TTCCAAGAGA AGCAAAGTAT GACAGGAAGG CTGAACTACA AGCTTTTGAT GAGACGAAAA 14713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAAGAGA AGCAAAGTAT GACAGGAAGG CTGAACTACA AGCTTTTGAT GAGACGAAAA 120 CCGGTGTTAA GGGACTAGTC GATACAGGTA TCACTAAAGT ACCAAGAATG TTTGTTCAAC 14653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTGTTAA GGGACTAGTC GATACAGGTA TCACTAAAGT ACCAAGAATG TTTGTTCAAC 180 CGTCAAGGAT TGAAGATTCA ACAATTCACA GCAACAAGAA GTTCAGTTTT CCAATAATTG 14593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCAAGGAT TGAAGATTCA ACAATTCACA GCAACAAGAA GTTCAGTTTT CCAATAATTG 240 ATCTTGATGG TATCAAGGAA AATTCGATCA AACGAAAGAA CATAGTCCAG GAAGTCGGTC 14533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGATGG TATCAAGGAA AATTCGATCA AACGAAAGAA CATAGTCCAG GAAGTCGGTC 300 AAGCATCCGA GACTTGGGGA TTCTTTCAAG TGATCAATCA TGGGATTCCT AGTCATCTTC 14473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCATCCGA GACTTGGGGA TTCTTTCAAG TGATCAATCA TGGGATTCCT AGTCATCTTC 360 TGGAGGAAAT GAAAGACGGT GTTCTCAGTT TCTTTGAACA AGATACCGAG GAGAAGAAAC 14413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGAAAT GAAAGACGGT GTTCTCAGTT TCTTTGAACA AGATACCGAG GAGAAGAAAC 420 AGTGGTATAC GCGAGATTTG ACAAAAGTGT TTACGTTTAA CAGCAATTTC GACCTGTTTG 14353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGTATAC GCGAGATTTG ACAAAAGTGT TTACGTTTAA CAGCAATTTC GACCTGTTTG 480 GAGCACCAGT AACCAACTGG AGAGACACTT TTACTGCTAC CACAGCTCCT ATACCTCCAA 14293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCACCAGT AACCAACTGG AGAGACACTT TTACTGCTAC CACAGCTCCT ATACCTCCAA 540 AACCTGAAGA ATTACCTTCT GTTTGCAGGT ATCATAAATT CTAATCTACA ATCCTACCCT 14233 |||||||||| |||||||||| |||||||| AACCTGAAGA ATTACCTTCT GTTTGCAG.. .......... .......... .......... 568 TCTATAACAT CATTTATCTA GAATAGATTT TTCAATAGCA TTCATATTCA GACAAATGAC 14173 .......... .......... .......... .......... .......... .......... 568 GTTGTTATAG AGAGGTTTGA CTGTATTGTA ATTTTATTTG CTTGTTCTGT ATCTATGATA 14113 .......... .......... .......... .......... .......... .......... 568 AGGGATGTTC TCCTTGAGTA CACAAACCAA GTGATGAAAT TAGGTGATAC TCTATTTGAA 14053 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GGATGTTC TCCTTGAGTA CACAAACCAA GTGATGAAAT TAGGTGATAC TCTATTTGAA 626 ATACTGGCTG AAGCTATTGG CCTCGAACCA AATCACCTCA AGGACAT-GG GTTGTGCCGA 13994 |||||||||| |||||||||| |||||||||| ||| ||||| ||||||| || |||||||||| ATACTGGCTG AAGCTATTGG CCTCGAACCA AAT-ACCTC- AGGACATGGG GTTGTGCCGA 684 GGGGCTTATG GCGTTAGGCC ATTATTATCC AGCATGCCCA CAACCAGAAC TAAC 13940 |||||| ||| |||||||||| |||||||||| |||||||||| | |||||||| |||| GGGGCTAATG GCGTTAGGCC ATTATTATCC AGCATGCCCA C-ACCAGAAC TAAC 737 hqPGS_C09HBa0168F14.1-2-_SGN-E344752+ (14832 14265,14110 13940) ******************************************************************************** EST sequence 214 +strand 518 n (File: SGN-E308685+) 1 ATGAATCAAA ACATGATAGA AAAAGTGAGT TAAAAGCCTT TGATGACACA AAATCTGGTG 61 TCAAAGGACT TGTTGATGCA GGAGTAAGTA AAGTCCCTCA GATATTCATT TCACCTCCAG 121 ATACATACTC AAATTCCAAC ACAGGACAGT TCATTTTTCC AGTTATAGAC CTCCAAGATA 181 TGGATAGTCA CGATCAAATC AATCGAAAAA AAGTCATTGA GAAAGTCCGC GATGCATCAG 241 AGACATGGGG TTTCTTTCAA GTGATCAATC ATGGCGTTCC GTGTGATGTT ATGGAAGAAA 301 TGATACGAGG TGTTTGTAGT TTTCATGAAC AAGATACTGA TATCAAGAAG CAATGGTATA 361 CGCGAGAGTT GACTAAAAGA GTAGTTTATA ACAGTAACTT TGATTTGTAT AATGCACCAG 421 CAACTAATTG GAGGGATACT TTTTTCTGCA TTATGGCTCC TAATCCTCCT AGTCCTGAAG 481 AATTGCCTCC AATCTGTAGG GATATCATTG TTAAATAC Predicted gene structure (within gDNA segment 19262 to 17373): Exon 1 18662 18164 ( 499 n); cDNA 1 499 ( 499 n); score: 1.000 Intron 1 18163 17832 ( 332 n); Pd: 0.652 (s: 1.00), Pa: 0.981 (s: 0) Exon 2 17831 17813 ( 19 n); cDNA 500 518 ( 19 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E308685+ 1.000 518 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E308685+ (18662 18164,17831 17813) Alignment (genomic DNA sequence = upper lines): ATGAATCAAA ACATGATAGA AAAAGTGAGT TAAAAGCCTT TGATGACACA AAATCTGGTG 18603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAATCAAA ACATGATAGA AAAAGTGAGT TAAAAGCCTT TGATGACACA AAATCTGGTG 60 TCAAAGGACT TGTTGATGCA GGAGTAAGTA AAGTCCCTCA GATATTCATT TCACCTCCAG 18543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGGACT TGTTGATGCA GGAGTAAGTA AAGTCCCTCA GATATTCATT TCACCTCCAG 120 ATACATACTC AAATTCCAAC ACAGGACAGT TCATTTTTCC AGTTATAGAC CTCCAAGATA 18483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACATACTC AAATTCCAAC ACAGGACAGT TCATTTTTCC AGTTATAGAC CTCCAAGATA 180 TGGATAGTCA CGATCAAATC AATCGAAAAA AAGTCATTGA GAAAGTCCGC GATGCATCAG 18423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATAGTCA CGATCAAATC AATCGAAAAA AAGTCATTGA GAAAGTCCGC GATGCATCAG 240 AGACATGGGG TTTCTTTCAA GTGATCAATC ATGGCGTTCC GTGTGATGTT ATGGAAGAAA 18363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATGGGG TTTCTTTCAA GTGATCAATC ATGGCGTTCC GTGTGATGTT ATGGAAGAAA 300 TGATACGAGG TGTTTGTAGT TTTCATGAAC AAGATACTGA TATCAAGAAG CAATGGTATA 18303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATACGAGG TGTTTGTAGT TTTCATGAAC AAGATACTGA TATCAAGAAG CAATGGTATA 360 CGCGAGAGTT GACTAAAAGA GTAGTTTATA ACAGTAACTT TGATTTGTAT AATGCACCAG 18243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGAGAGTT GACTAAAAGA GTAGTTTATA ACAGTAACTT TGATTTGTAT AATGCACCAG 420 CAACTAATTG GAGGGATACT TTTTTCTGCA TTATGGCTCC TAATCCTCCT AGTCCTGAAG 18183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTAATTG GAGGGATACT TTTTTCTGCA TTATGGCTCC TAATCCTCCT AGTCCTGAAG 480 AATTGCCTCC AATCTGTAGG TATGTCATTT ATACGACACG TGGTGTAAAA GGGGTTCGAT 18123 |||||||||| ||||||||| AATTGCCTCC AATCTGTAG. .......... .......... .......... .......... 499 TGAATCCTCT TCGTTGAAAA AGTATAGCGA TATGTATGAA ACTCGTTGAA TCCCCTTGAC 18063 .......... .......... .......... .......... .......... .......... 499 AGAAGACCAG TAGCTAAGCT AGCAATTCTG CTAAGGGGTG TTCAAGATTT TGTATATGTA 18003 .......... .......... .......... .......... .......... .......... 499 TAATATAAAA TGACTTTTGG ATTGAGAGTG TTTAACTAAC TGCCCTGACT CCCCTGCAGA 17943 .......... .......... .......... .......... .......... .......... 499 TATAAGTTTG AATCCTAGTT GTGACACACT ATCATTTCTT GAATCCCCGT GTTAGAATTT 17883 .......... .......... .......... .......... .......... .......... 499 CTGATTCCGA TACTGATATT GTTTAGTGTT TTCTTTATGA TGTGGTAAAA GGGATATCAT 17823 ||||||||| .......... .......... .......... .......... .......... .GGATATCAT 508 TGTTAAATAC 17813 |||||||||| TGTTAAATAC 518 hqPGS_C09HBa0168F14.1-2-_SGN-E308685+ (18662 18164) ******************************************************************************** EST sequence 121 +strand 487 n (File: SGN-E293583+) 1 CTGTTCTGAT GGGAGGTAAC ATTTAGTGGA CGCAAGCTAA CCGAGACATC ACTTTTGTTA 61 AAGGGAAGAG TACTATATCC TATTGATGAA TAATAGAACA AGATATATCA AGAAAATGGA 121 TACAAATGAA TCAAAACATG ATAGAAAAAG TGAGTTAAAA GCCTTTGATG ACACAAAATC 181 TGGTGTCAAA GGACTTGTTG ATGCAGGAGT AAGTAAAGTC CCTCAGATAT TCATTTCACC 241 TCCAGATACA TACTCAAATT CCAACACAGG ACAGTTCATT TTTCCAGTTA TAGACCTCCA 301 AGATATGGAT AGTCACGATC AAATCAATCG AAAAAAAGTC ATTGAGAAAG TCCGCGATGC 361 ATCAGAGACA TGGGGTTTCT TTCAAGTGAT CAATCATGGC GTTCCGTGTG ATGTTATGGA 421 AGAAATGATA CGAAGTGTTT GTAGTTTTCA TGAACAAGAT ACTGATATCA AGAAGCAATG 481 GTATACG Predicted gene structure (within gDNA segment 19387 to 17691): Exon 1 18787 18301 ( 487 n); cDNA 1 487 ( 487 n); score: 0.998 MATCH C09HBa0168F14.1-2- SGN-E293583+ 0.998 487 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E293583+ (18787 18301) Alignment (genomic DNA sequence = upper lines): CTGTTCTGAT GGGAGGTAAC ATTTAGTGGA CGCAAGCTAA CCGAGACATC ACTTTTGTTA 18728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCTGAT GGGAGGTAAC ATTTAGTGGA CGCAAGCTAA CCGAGACATC ACTTTTGTTA 60 AAGGGAAGAG TACTATATCC TATTGATGAA TAATAGAACA AGATATATCA AGAAAATGGA 18668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGAAGAG TACTATATCC TATTGATGAA TAATAGAACA AGATATATCA AGAAAATGGA 120 TACAAATGAA TCAAAACATG ATAGAAAAAG TGAGTTAAAA GCCTTTGATG ACACAAAATC 18608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAATGAA TCAAAACATG ATAGAAAAAG TGAGTTAAAA GCCTTTGATG ACACAAAATC 180 TGGTGTCAAA GGACTTGTTG ATGCAGGAGT AAGTAAAGTC CCTCAGATAT TCATTTCACC 18548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTCAAA GGACTTGTTG ATGCAGGAGT AAGTAAAGTC CCTCAGATAT TCATTTCACC 240 TCCAGATACA TACTCAAATT CCAACACAGG ACAGTTCATT TTTCCAGTTA TAGACCTCCA 18488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGATACA TACTCAAATT CCAACACAGG ACAGTTCATT TTTCCAGTTA TAGACCTCCA 300 AGATATGGAT AGTCACGATC AAATCAATCG AAAAAAAGTC ATTGAGAAAG TCCGCGATGC 18428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATATGGAT AGTCACGATC AAATCAATCG AAAAAAAGTC ATTGAGAAAG TCCGCGATGC 360 ATCAGAGACA TGGGGTTTCT TTCAAGTGAT CAATCATGGC GTTCCGTGTG ATGTTATGGA 18368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGAGACA TGGGGTTTCT TTCAAGTGAT CAATCATGGC GTTCCGTGTG ATGTTATGGA 420 AGAAATGATA CGAGGTGTTT GTAGTTTTCA TGAACAAGAT ACTGATATCA AGAAGCAATG 18308 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATGATA CGAAGTGTTT GTAGTTTTCA TGAACAAGAT ACTGATATCA AGAAGCAATG 480 GTATACG 18301 ||||||| GTATACG 487 hqPGS_C09HBa0168F14.1-2-_SGN-E293583+ (18787 18301) ******************************************************************************** EST sequence 122 +strand 487 n (File: SGN-E293584+) 1 CTGTTCTGAT GGGAGGTAAC ATTTAGTGGA CGCAAGCTAA CCGAGACATC ACTTTTGTTA 61 AAGGGAAGAG TACTATATCC TATTGATGAA TAATAGAACA AGATATATCA AGAAAATGGA 121 TACAAATGAA TCAAAACATG ATAGAAAAAG TGAGTTAAAA GCCTTTGATG ACACAAAATC 181 TGGTGTCAAA GGACTTGTTG ATGCAGGAGT AAGTAAAGTC CCTCAGATAT TCATTTCACC 241 TCCAGATACA TACTCAAATT CCAACACAGG ACAGTTCATT TTTCCAGTTA TAGACCTCCA 301 AGATATGGAT AGTCACGATC AAATCAATCG AAAAAAAGTC ATTGAGAAAG TCCGCGATGC 361 ATCAGAGACA TGGGGTTTCT TTCAAGTGAT CAATCATGGC GTTCCGTGTG ATGTTATGGA 421 AGAAATGATA CGAAGTGTTT GTAGTTTTCA TGAACAAGAT ACTGATATCA AGAAGCAATG 481 GTATACG Predicted gene structure (within gDNA segment 19387 to 17691): Exon 1 18787 18301 ( 487 n); cDNA 1 487 ( 487 n); score: 0.998 MATCH C09HBa0168F14.1-2- SGN-E293584+ 0.998 487 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E293584+ (18787 18301) Alignment (genomic DNA sequence = upper lines): CTGTTCTGAT GGGAGGTAAC ATTTAGTGGA CGCAAGCTAA CCGAGACATC ACTTTTGTTA 18728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTCTGAT GGGAGGTAAC ATTTAGTGGA CGCAAGCTAA CCGAGACATC ACTTTTGTTA 60 AAGGGAAGAG TACTATATCC TATTGATGAA TAATAGAACA AGATATATCA AGAAAATGGA 18668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGAAGAG TACTATATCC TATTGATGAA TAATAGAACA AGATATATCA AGAAAATGGA 120 TACAAATGAA TCAAAACATG ATAGAAAAAG TGAGTTAAAA GCCTTTGATG ACACAAAATC 18608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAATGAA TCAAAACATG ATAGAAAAAG TGAGTTAAAA GCCTTTGATG ACACAAAATC 180 TGGTGTCAAA GGACTTGTTG ATGCAGGAGT AAGTAAAGTC CCTCAGATAT TCATTTCACC 18548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTCAAA GGACTTGTTG ATGCAGGAGT AAGTAAAGTC CCTCAGATAT TCATTTCACC 240 TCCAGATACA TACTCAAATT CCAACACAGG ACAGTTCATT TTTCCAGTTA TAGACCTCCA 18488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGATACA TACTCAAATT CCAACACAGG ACAGTTCATT TTTCCAGTTA TAGACCTCCA 300 AGATATGGAT AGTCACGATC AAATCAATCG AAAAAAAGTC ATTGAGAAAG TCCGCGATGC 18428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATATGGAT AGTCACGATC AAATCAATCG AAAAAAAGTC ATTGAGAAAG TCCGCGATGC 360 ATCAGAGACA TGGGGTTTCT TTCAAGTGAT CAATCATGGC GTTCCGTGTG ATGTTATGGA 18368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGAGACA TGGGGTTTCT TTCAAGTGAT CAATCATGGC GTTCCGTGTG ATGTTATGGA 420 AGAAATGATA CGAGGTGTTT GTAGTTTTCA TGAACAAGAT ACTGATATCA AGAAGCAATG 18308 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATGATA CGAAGTGTTT GTAGTTTTCA TGAACAAGAT ACTGATATCA AGAAGCAATG 480 GTATACG 18301 ||||||| GTATACG 487 hqPGS_C09HBa0168F14.1-2-_SGN-E293584+ (18787 18301) ******************************************************************************** EST sequence 240 +strand 492 n (File: SGN-E300999+) 1 TCGGTTGGTG TCTGTTCTGA TGGGAGGTAA CATTTAGTGG ACGCAAGCTA ACCGAGACAT 61 CACTTTTGTT AAAGGGAAGA GTACTATATC CTATTGATGA ATAATAGAAC AAGATATATC 121 AAGAAAATGG ATACAAATGA ATCAAAACAT GATAGAAAAA GTGAGTTAAA AGCCTTTGAT 181 GACACAAAAT CTGGTGTCAA AGGACTTGTT GATGCAGGAG TAAGTAAAGT CCCTCAGATA 241 TTCATTTCAC CTCCAGATAC ATACTCAAAT TCCAACACAG GACAGTTCAT TTTTCCAGTT 301 ATAGACCTCC AAGATATGGA TAGTCACGAT CAAATCAATC GAAAAAAAGT CATTGAGAAA 361 GTCCGCGATG CATCAGAGAC ATGGGGTTTC TTTCAAGTGA TCAATCATGG CGTTCCGTGT 421 GATGTTATGG AAGAAATGAT ACGAGGTGTT TGTAGTTTTC ATGAACAAGA TACTGATATC 481 AAGAAGCAAT GG Predicted gene structure (within gDNA segment 19398 to 17697): Exon 1 18798 18307 ( 492 n); cDNA 1 492 ( 492 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E300999+ 1.000 492 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E300999+ (18798 18307) Alignment (genomic DNA sequence = upper lines): TCGGTTGGTG TCTGTTCTGA TGGGAGGTAA CATTTAGTGG ACGCAAGCTA ACCGAGACAT 18739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGTTGGTG TCTGTTCTGA TGGGAGGTAA CATTTAGTGG ACGCAAGCTA ACCGAGACAT 60 CACTTTTGTT AAAGGGAAGA GTACTATATC CTATTGATGA ATAATAGAAC AAGATATATC 18679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTTTGTT AAAGGGAAGA GTACTATATC CTATTGATGA ATAATAGAAC AAGATATATC 120 AAGAAAATGG ATACAAATGA ATCAAAACAT GATAGAAAAA GTGAGTTAAA AGCCTTTGAT 18619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAATGG ATACAAATGA ATCAAAACAT GATAGAAAAA GTGAGTTAAA AGCCTTTGAT 180 GACACAAAAT CTGGTGTCAA AGGACTTGTT GATGCAGGAG TAAGTAAAGT CCCTCAGATA 18559 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACAAAAT CTGGTGTCAA AGGACTTGTT GATGCAGGAG TAAGTAAAGT CCCTCAGATA 240 TTCATTTCAC CTCCAGATAC ATACTCAAAT TCCAACACAG GACAGTTCAT TTTTCCAGTT 18499 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTTCAC CTCCAGATAC ATACTCAAAT TCCAACACAG GACAGTTCAT TTTTCCAGTT 300 ATAGACCTCC AAGATATGGA TAGTCACGAT CAAATCAATC GAAAAAAAGT CATTGAGAAA 18439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGACCTCC AAGATATGGA TAGTCACGAT CAAATCAATC GAAAAAAAGT CATTGAGAAA 360 GTCCGCGATG CATCAGAGAC ATGGGGTTTC TTTCAAGTGA TCAATCATGG CGTTCCGTGT 18379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCGCGATG CATCAGAGAC ATGGGGTTTC TTTCAAGTGA TCAATCATGG CGTTCCGTGT 420 GATGTTATGG AAGAAATGAT ACGAGGTGTT TGTAGTTTTC ATGAACAAGA TACTGATATC 18319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTATGG AAGAAATGAT ACGAGGTGTT TGTAGTTTTC ATGAACAAGA TACTGATATC 480 AAGAAGCAAT GG 18307 |||||||||| || AAGAAGCAAT GG 492 hqPGS_C09HBa0168F14.1-2-_SGN-E300999+ (18798 18307) ******************************************************************************** EST sequence 84 +strand 640 n (File: SGN-E321546+) 1 TCTCACGGCG GCGATCTCTT TCTCCGGAGG ATTTAAAGTC CTAAGTCTCT TCATTTATAT 61 CTTCAATTCA CGAATTCCCT TTGGCAGGAG TGAGTGTAAA GCACAAGTTT TACCAAGTGG 121 TTGAAGTGGA AATTATCCGA GTTCTTTTGC ATTAGCACAA CACGCGTATG AAATTCTGAT 181 CAAGCTAACA TCATTTGCAA TTCATTGCTT GGAAAGTGAT ATCTTAAGCA TGAAGCTCAT 241 AGCACGGTTA AGACCCATCC AAACCTGTAC AGCTCTTCGT GAAATTATAG GGCCTCTGCA 301 GTCTCGTTCG TTTCAACCTG ATTTTGTTCC CAGAGATCCT AATGTCAAGC CCATAAGGTA 361 CAAATATCCT GCTGCCTATG ATCCATATGG CCCGAGACCC CCACCATCAG ACAAGATAGT 421 TCAGCTTGCT GAACGTATTG CTGCTTTAGC CCCAGAAGAA CGTAGACAAA TTGGTCCTTT 481 ACTCAGGGAG ATACTAAGGC ACCCTACTTT GAAACCAATT TCAGTAGAAG GCATGGATTT 541 GGGTGCAATG GGAGGAGCAG GTGGTGGACC GGCAAAGGCT GAGGAGAAGA AGTTGAGAAA 601 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG Predicted gene structure (within gDNA segment 19084 to 21798): Exon 1 19684 19766 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 19767 20630 ( 864 n); Pd: 0.604 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 2 20631 21188 ( 558 n); cDNA 84 640 ( 557 n); score: 0.998 MATCH C09HBa0168F14.1-2+ SGN-E321546+ 0.998 641 1.002 C PGS_C09HBa0168F14.1-2+_SGN-E321546+ (19684 19766,20631 21188) Alignment (genomic DNA sequence = upper lines): TCTCACGGCG GCGATCTCTT TCTCCGGAGG ATTTAAAGTC CTAAGTCTCT TCATTTATAT 19743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCACGGCG GCGATCTCTT TCTCCGGAGG ATTTAAAGTC CTAAGTCTCT TCATTTATAT 60 CTTCAATTCA CGAATTCCCT TTGGTTAGTG TTCATGAGCC ATAAACGCTA CTTTTTATTT 19803 |||||||||| |||||||||| ||| CTTCAATTCA CGAATTCCCT TTG....... .......... .......... .......... 83 TTTGATTTGG TGAAATGTGA CTTTTGAATT GGATCTATGT ACATCTTGAA AATCCTCAGA 19863 .......... .......... .......... .......... .......... .......... 83 TTCAATTTTT CTTAGCTCTG TGTGAATATT TACGTCGCTG TGCTTCGGCT ACCTGTAGAA 19923 .......... .......... .......... .......... .......... .......... 83 ATGATAATTT AGAGTCAAAG GAAAATATCA TAAGTTTGGC CTCTTCGACT GTTAGAGCGA 19983 .......... .......... .......... .......... .......... .......... 83 TTTGTCTGCT GTGCTTTTGG TTCTTCTTTT AATCTTTGCT TCTAGCTGGA AATTTTTTCT 20043 .......... .......... .......... .......... .......... .......... 83 TTTTTTCTGC TTCTTCGATA TGTTTTGGAA ACTGAATTTG GGGTTGTTTT TTTGGGTCTA 20103 .......... .......... .......... .......... .......... .......... 83 AAGCCACTGT TGAGCTGCCC TTGTGTGTTA GCAGTTAGTA CATTATCTGG AATTGATTGT 20163 .......... .......... .......... .......... .......... .......... 83 TTTCGTCTTT GCAGTCTGCT GCAATAGCAT CAAAGGATAC TTCTGTGCTT CCTTTGATAG 20223 .......... .......... .......... .......... .......... .......... 83 ATGAACAACT AGTTTTCCTC GTAAAAATGA TGTAAAGGTT TAATTTGAAT TCAGTTTCAT 20283 .......... .......... .......... .......... .......... .......... 83 TCGTTCATTG TCGTAGTTGT TATCTGTATA TCTTTTGTAA ATTCTTTTCG TTGTAAATTA 20343 .......... .......... .......... .......... .......... .......... 83 AAATGTCACA TTTGCCTTCT TTGTTATTAT TGACGATGAC CACTGGCCTG TTATCCATCT 20403 .......... .......... .......... .......... .......... .......... 83 TTGGTGCGTT GTGTTGCGTT TATAATACAC TGATGATTTT GTCAATCTAA AGTCATATAT 20463 .......... .......... .......... .......... .......... .......... 83 GAAAGCTTCA TTTTAGGAAC TTTTACGAGT GTCCGTTCGT AAACTAAAAC GAATGGAAGT 20523 .......... .......... .......... .......... .......... .......... 83 TTTAGTTTTT GAGGAATTTA TGTGTATGTG TCTATTGATA GATAGGGTGA TTGGAGTGTA 20583 .......... .......... .......... .......... .......... .......... 83 TTTTTCGTTT CTATTGTATG AACTGAATGT CGAATTTTCT TTTCAAGGCA GGAGTGAGTG 20643 ||| |||||||||| .......... .......... .......... .......... .......GCA GGAGTGAGTG 96 TAAAGCACAA GTTTTACCAA GTGGTTGAAG TGGAAATTAT CCGAGTTCTT TTGCATTAGC 20703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGCACAA GTTTTACCAA GTGGTTGAAG TGGAAATTAT CCGAGTTCTT TTGCATTAGC 156 ACAACACGCG TATGAAATTC TGATCAAGCT AACATCATTT GCAATTCATT GCTTGGAAAG 20763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACACGCG TATGAAATTC TGATCAAGCT AACATCATTT GCAATTCATT GCTTGGAAAG 216 TGATATCTTA AGCATGAAGC TCATAGCACG GTTAAGACCC ATCCAAACCT GTACAGCTCT 20823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATATCTTA AGCATGAAGC TCATAGCACG GTTAAGACCC ATCCAAACCT GTACAGCTCT 276 TCGTGAAATT ATAGGGCCTC TGCAGTCTCG TTCGTTTCAA CCTGATTTTG TTCCCAGAGA 20883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTGAAATT ATAGGGCCTC TGCAGTCTCG TTCGTTTCAA CCTGATTTTG TTCCCAGAGA 336 TCCTAATGTC AAGCCCATAA GGTACAAATA TCCTGCTGCC TATGATCCAT ATGGCCCGAG 20943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTAATGTC AAGCCCATAA GGTACAAATA TCCTGCTGCC TATGATCCAT ATGGCCCGAG 396 ACCCCCACCA TCAGACAAGA TAGTTCAGCT TGCTGAACGT ATTGCTGCTT TAGCCCCAGA 21003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCCACCA TCAGACAAGA TAGTTCAGCT TGCTGAACGT ATTGCTGCTT TAGCCCCAGA 456 AGAACGTAGA CAAATTGGTC CTTTACTCAG GGAGATACTA AGGCACCCTA CTTTGAAACC 21063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACGTAGA CAAATTGGTC CTTTACTCAG GGAGATACTA AGGCACCCTA CTTTGAAACC 516 AATTTCAGTA GAAGGCATGG ATTTGGGTGC AATGGGAGGA GCAGGTGGTG GACCGGCAAA 21123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTCAGTA GAAGGCATGG ATTTGGGTGC AATGGGAGGA GCAGGTGGTG GACCGGCAAA 576 GGCTGAGGAG AAGAAGGTTG AGAAAACAGC ATTTGACGTG AAGTTAGAGA AATTTGATGC 21183 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGAGGAG AAGAA-GTTG AGAAAACAGC ATTTGACGTG AAGTTAGAGA AATTTGATGC 635 AGCTG 21188 ||||| AGCTG 640 hqPGS_C09HBa0168F14.1-2+_SGN-E321546+ (19684 19766,20631 21188) ******************************************************************************** EST sequence 88 +strand 645 n (File: SGN-E368375+) 1 TCGTGCCGCC AGTTCACACT GCACTCGCCG GAATCTCTCA CGGCGGCGAT CTCTTTCTCC 61 GGAGGATTTA AAGTCCTAAG TCTCTTCATT TATATCTTCA ATTCACGAAT TCCCTTTGGT 121 TAGTGTTCAT GAGCCATAAA CGCTACTTTT TATTTTTTGA TTTGGTGAAA TGTGACTTTT 181 GAATTGGATC TATGTACATC TTGAAAATCC TCAGATTCAA TTTTTCTTAG CTCTGTGTGA 241 ATATTTACGT CGCTGTGCTT CGGCTACCTG TAGAAATGAT AATTTAGAGT CAAAGGAAAA 301 TATCATAAGT TTGGCCTCTT CGACTGTTAG AGCGATTTGT CTGCTGTGCT TTTGGTTCTT 361 CTTTTAATCT TTGCTTCTAG CTGGAAATTT TTTCTTTTTT TCTGCTTCTT CGATATGTTT 421 TGGAAACTGA ATTTGGGGTT GTTTTTTTGG GTCTAAAGCC ACTGTTGAGC TGCCCTTGTG 481 TGTTAGCAGT TAGTACATTA TCTGGAATTG ATTGTTTTCG TCTTTTGCAG TCTGCTGCAA 541 TAGCATCAAA GGATACTTCT GTGCTTTCTT TGATAGATGA ACAACTAGTT TTCCTCGTAA 601 AAATGATGTA AAGGTTTAAT TTGAATTCAG TTTCATTCGT TCATT Predicted gene structure (within gDNA segment 18986 to 20902): Exon 1 19656 20292 ( 637 n); cDNA 8 645 ( 638 n); score: 0.995 MATCH C09HBa0168F14.1-2+ SGN-E368375+ 0.995 637 0.988 C PGS_C09HBa0168F14.1-2+_SGN-E368375+ (19656 20292) Alignment (genomic DNA sequence = upper lines): GCCAGTTCAC ACTGCACTCG CCGGAATCTC TCACGGCGGC GATCTCTTTC TCCGGAGGAT 19715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGTTCAC ACTGCACTCG CCGGAATCTC TCACGGCGGC GATCTCTTTC TCCGGAGGAT 67 TTAAAGTCCT AAGTCTCTTC ATTTATATCT TCAATTCACG AATTCCCTTT GGTTAGTGTT 19775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAGTCCT AAGTCTCTTC ATTTATATCT TCAATTCACG AATTCCCTTT GGTTAGTGTT 127 CATGAGCCAT AAACGCTACT TTTTATTTTT TGATTTGGTG AAATGTGACT TTTGAATTGG 19835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAGCCAT AAACGCTACT TTTTATTTTT TGATTTGGTG AAATGTGACT TTTGAATTGG 187 ATCTATGTAC ATCTTGAAAA TCCTCAGATT CAATTTTTCT TAGCTCTGTG TGAATATTTA 19895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATGTAC ATCTTGAAAA TCCTCAGATT CAATTTTTCT TAGCTCTGTG TGAATATTTA 247 CGTCGCTGTG CTTCGGCTAC CTGTAGAAAT GATAATTTAG AGTCAAAGGA AAATATCATA 19955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGCTGTG CTTCGGCTAC CTGTAGAAAT GATAATTTAG AGTCAAAGGA AAATATCATA 307 AGTTTGGCCT CTTCGACTGT TAGAGCGATT TGTCTGCTGT GCTTTTGGTT CTTCTTTTAA 20015 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGGCCT CTTCGACTGT TAGAGCGATT TGTCTGCTGT GCTTTTGGTT CTTCTTTTAA 367 TCTTTGCTTC TAGCTGGAAA TTTTTTCTTT TTTTCTGCTT CTTCGATATG TTTTGGAAAC 20075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGCTTC TAGCTGGAAA TTTTTTCTTT TTTTCTGCTT CTTCGATATG TTTTGGAAAC 427 TGAATTTGGG GTTGTTTTTT TGGGTCTAAA GCCACTGTTG AGCTGCCCTT GTGTGTTAGC 20135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTTGGG GTTGTTTTTT TGGGTCTAAA GCCACTGTTG AGCTGCCCTT GTGTGTTAGC 487 AGTTAGTACA TTATCTGGAA TTGATTGTTT TCGTC-TTTG CAGTCTGCTG CAATAGCATC 20194 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AGTTAGTACA TTATCTGGAA TTGATTGTTT TCGTCTTTTG CAGTCTGCTG CAATAGCATC 547 AAAGGATACT TCTGTGCTTC CTTTGATAGA TGAACAACTA GTTTTCCTCG TAAAAATGAT 20254 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGATACT TCTGTGCTTT CTTTGATAGA TGAACAACTA GTTTTCCTCG TAAAAATGAT 607 GTAAAGGTTT AATTTGAATT CAGTTTCATT CGTTCATT 20292 |||||||||| |||||||||| |||||||||| |||||||| GTAAAGGTTT AATTTGAATT CAGTTTCATT CGTTCATT 645 hqPGS_C09HBa0168F14.1-2+_SGN-E368375+ (19656 20292) ******************************************************************************** EST sequence 68 +strand 506 n (File: SGN-E246120+) 1 TCGTGCCGCC AGTTCACACT GCACTCGCCG GAATCTCTCA CGGCGGCGAT CTCTTTCTCC 61 GGAGGATTTA AAGTCCTAAG TCTCTTCATT TATATCTTCA ATTCACGAAT TCCCTTTGGT 121 TAGTGTTCAT GAGCCATAAA CGCTACTTTT TATTTTTTGA TTTGGTGAAA TGTGACTTTT 181 GAATTGGATC TATGTACATC TTGAAAATCC TCAGATTCAA TTTTTCTTAG CTCTGTGTGA 241 ATATTTACGT CGCTGTGCTT CGGCTACCTG TAGAAATGAT AATTTAGAGT CAAAGGAAAA 301 TATCATAAGT TTGGCCTCTT CGACTGTTAG AGCGGTTTGT CTGCTGTGCT TTTGGTTCTT 361 CTTTTAATCT TTGCTTCTAG CTGGAAATTT TTTCTTTTTT TCTGCTTCTT CGATATGTTT 421 TGGAAACTGA ATTTGGGGTT GTTTTTTTGG GTCTAAAGCC ACTGTTGAGC TGCCCTTGTG 481 TGTTAGCAGT TAGTACATTA TCTGGA Predicted gene structure (within gDNA segment 18986 to 20764): Exon 1 19656 20154 ( 499 n); cDNA 8 506 ( 499 n); score: 0.998 MATCH C09HBa0168F14.1-2+ SGN-E246120+ 0.998 499 0.986 C PGS_C09HBa0168F14.1-2+_SGN-E246120+ (19656 20154) Alignment (genomic DNA sequence = upper lines): GCCAGTTCAC ACTGCACTCG CCGGAATCTC TCACGGCGGC GATCTCTTTC TCCGGAGGAT 19715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGTTCAC ACTGCACTCG CCGGAATCTC TCACGGCGGC GATCTCTTTC TCCGGAGGAT 67 TTAAAGTCCT AAGTCTCTTC ATTTATATCT TCAATTCACG AATTCCCTTT GGTTAGTGTT 19775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAGTCCT AAGTCTCTTC ATTTATATCT TCAATTCACG AATTCCCTTT GGTTAGTGTT 127 CATGAGCCAT AAACGCTACT TTTTATTTTT TGATTTGGTG AAATGTGACT TTTGAATTGG 19835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGAGCCAT AAACGCTACT TTTTATTTTT TGATTTGGTG AAATGTGACT TTTGAATTGG 187 ATCTATGTAC ATCTTGAAAA TCCTCAGATT CAATTTTTCT TAGCTCTGTG TGAATATTTA 19895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATGTAC ATCTTGAAAA TCCTCAGATT CAATTTTTCT TAGCTCTGTG TGAATATTTA 247 CGTCGCTGTG CTTCGGCTAC CTGTAGAAAT GATAATTTAG AGTCAAAGGA AAATATCATA 19955 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCGCTGTG CTTCGGCTAC CTGTAGAAAT GATAATTTAG AGTCAAAGGA AAATATCATA 307 AGTTTGGCCT CTTCGACTGT TAGAGCGATT TGTCTGCTGT GCTTTTGGTT CTTCTTTTAA 20015 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AGTTTGGCCT CTTCGACTGT TAGAGCGGTT TGTCTGCTGT GCTTTTGGTT CTTCTTTTAA 367 TCTTTGCTTC TAGCTGGAAA TTTTTTCTTT TTTTCTGCTT CTTCGATATG TTTTGGAAAC 20075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTGCTTC TAGCTGGAAA TTTTTTCTTT TTTTCTGCTT CTTCGATATG TTTTGGAAAC 427 TGAATTTGGG GTTGTTTTTT TGGGTCTAAA GCCACTGTTG AGCTGCCCTT GTGTGTTAGC 20135 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATTTGGG GTTGTTTTTT TGGGTCTAAA GCCACTGTTG AGCTGCCCTT GTGTGTTAGC 487 AGTTAGTACA TTATCTGGA 20154 |||||||||| ||||||||| AGTTAGTACA TTATCTGGA 506 hqPGS_C09HBa0168F14.1-2+_SGN-E246120+ (19656 20154) ******************************************************************************** EST sequence 111 +strand 713 n (File: SGN-E369987+) 1 TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 61 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 121 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 181 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 241 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 301 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 361 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 421 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 481 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAAATCAA GGTGATCAAA 541 GAGGTTAGAT CCTTCACGAG TCTAGGTCTG AAGGAAGCCA AGGACCTTGT CGAAAAGGTT 601 CCTGCTATAC TTAAGNCAGG AGTAACCAAA GAGGAAGCTA ATGAAATAAT AGAAAAGATC 661 AAAGCTGTTG GAGGAGTCGC CGTTATGGAG TAACAACAAT CTCTGTTGGA TTT Predicted gene structure (within gDNA segment 20069 to 21991): Exon 1 20669 21381 ( 713 n); cDNA 1 713 ( 713 n); score: 0.997 MATCH C09HBa0168F14.1-2+ SGN-E369987+ 0.997 713 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E369987+ (20669 21381) Alignment (genomic DNA sequence = upper lines): TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 20728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 60 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 20788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 120 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 20848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 180 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 20908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 240 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 20968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 300 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 21028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 360 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 420 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 480 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAAATCAA GGTGATCAAA 21208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAAATCAA GGTGATCAAA 540 GAGGTTAGAT CCTTCACGAG TCTAGGTCTG AAGGAAGCCA AGGACCTTGT CGAAAAGGTT 21268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTTAGAT CCTTCACGAG TCTAGGTCTG AAGGAAGCCA AGGACCTTGT CGAAAAGGTT 600 CCTGCTATAC TTAAGCAAGG AGTAACCAAA GAGGAAGCTA ATGAAATAAT AGAAAAGATC 21328 |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCTATAC TTAAGNCAGG AGTAACCAAA GAGGAAGCTA ATGAAATAAT AGAAAAGATC 660 AAAGCTGTTG GAGGAGTCGC CGTTATGGAG TAACAACAAT CTCTGTTGGA TTT 21381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AAAGCTGTTG GAGGAGTCGC CGTTATGGAG TAACAACAAT CTCTGTTGGA TTT 713 hqPGS_C09HBa0168F14.1-2+_SGN-E369987+ (20669 21381) ******************************************************************************** EST sequence 26 +strand 655 n (File: SGN-E262560+) 1 TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 61 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 121 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 181 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 241 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 301 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 361 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 421 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 481 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAAATCAA GGTGATCAAA 541 GAGGTTAGAT CCTTCACGAG TCTAGGTCTG AAAGAGCCAA GGACCCTTGT CGAAAGGTTC 601 CTGCTATACT TAAGCAAGGA GTAACCAAAG AGGAAGCTAT GGAATAATAG AAAAG Predicted gene structure (within gDNA segment 20069 to 22078): Exon 1 20669 21325 ( 657 n); cDNA 1 655 ( 655 n); score: 0.989 MATCH C09HBa0168F14.1-2+ SGN-E262560+ 0.989 657 1.003 C PGS_C09HBa0168F14.1-2+_SGN-E262560+ (20669 21325) Alignment (genomic DNA sequence = upper lines): TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 20728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 60 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 20788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 120 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 20848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 180 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 20908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 240 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 20968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 300 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 21028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 360 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 420 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 480 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAAATCAA GGTGATCAAA 21208 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAAATCAA GGTGATCAAA 540 GAGGTTAGAT CCTTCACGAG TCTAGGTCTG AAGGAAGCCA AGGA-CCTTG TCGAAAAGGT 21267 |||||||||| |||||||||| |||||||||| || | ||||| |||| ||||| ||| |||||| GAGGTTAGAT CCTTCACGAG TCTAGGTCTG AAAG-AGCCA AGGACCCTTG TCG-AAAGGT 598 TCCTGCTATA CTTAAGCAAG GAGTAACCAA AGAGGAAGCT AATGAAATAA TAGAAAAG 21325 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| |||||||| TCCTGCTATA CTTAAGCAAG GAGTAACCAA AGAGGAAGCT -ATGGAATAA TAGAAAAG 655 hqPGS_C09HBa0168F14.1-2+_SGN-E262560+ (20669 21325) ******************************************************************************** EST sequence 45 +strand 525 n (File: SGN-E254785+) 1 TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 61 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 121 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 181 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 241 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 301 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 361 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 421 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 481 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAA Predicted gene structure (within gDNA segment 20069 to 21803): Exon 1 20669 21193 ( 525 n); cDNA 1 525 ( 525 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E254785+ 1.000 525 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E254785+ (20669 21193) Alignment (genomic DNA sequence = upper lines): TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 20728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 60 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 20788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 120 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 20848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 180 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 20908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 240 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 20968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 300 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 21028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 360 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 420 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 480 ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAA 21193 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ACAGCATTTG ACGTGAAGTT AGAGAAATTT GATGCAGCTG CGAAA 525 hqPGS_C09HBa0168F14.1-2+_SGN-E254785+ (20669 21193) ******************************************************************************** EST sequence 73 +strand 502 n (File: SGN-E259547+) 1 TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 61 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 121 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 181 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 241 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 301 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 361 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 421 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 481 ACAGCATTTG ACGTGAAGTT AG Predicted gene structure (within gDNA segment 20069 to 21780): Exon 1 20669 21170 ( 502 n); cDNA 1 502 ( 502 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E259547+ 1.000 502 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E259547+ (20669 21170) Alignment (genomic DNA sequence = upper lines): TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 20728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 60 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 20788 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 120 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 20848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 180 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 20908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 240 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 20968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 300 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 21028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 360 CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 21088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGGGAGA TACTAAGGCA CCCTACTTTG AAACCAATTT CAGTAGAAGG CATGGATTTG 420 GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 21148 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCAATGG GAGGAGCAGG TGGTGGACCG GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA 480 ACAGCATTTG ACGTGAAGTT AG 21170 |||||||||| |||||||||| || ACAGCATTTG ACGTGAAGTT AG 502 hqPGS_C09HBa0168F14.1-2+_SGN-E259547+ (20669 21170) ******************************************************************************** EST sequence 34 +strand 400 n (File: SGN-E260421+) 1 CGAAGTGGAA ATTATCCGAG TTCTTTTGCA TTAGCACAAC ACGCGTATGA AATTCTGATC 61 AAGCTAACAT CATTTGCAAT TCATTGCTTG GAAAGTGATA TCTTAAGCAT GAAGCTCATA 121 GCACGGTTAA GACCCATCCA AACCTGTACA GCTCTTCGTG AAATTATAGG GCCTCTGCAG 181 TCTCGTTCGT TTCAACCTGA TTTTGTTCCC AGAGATCCTA ATGTCAAGCC CATAAGGTAC 241 AAATATCCTG CTGCCTATGA TCCATATGGC CCGAGACCCC CACCATCAGA CAAGATAGTT 301 CAGCTTGCTG AACGTATTGC TGCTTTAGCC CCAGAAGAAC GTAGACAAAT TGGTCCTTTA 361 CTCAGGGAGA TACTAAAGCA CCCTACTTTG AAACCAATTT Predicted gene structure (within gDNA segment 20060 to 21678): Exon 1 20670 21068 ( 399 n); cDNA 2 400 ( 399 n); score: 0.997 MATCH C09HBa0168F14.1-2+ SGN-E260421+ 0.997 399 0.998 C PGS_C09HBa0168F14.1-2+_SGN-E260421+ (20670 21068) Alignment (genomic DNA sequence = upper lines): GAAGTGGAAA TTATCCGAGT TCTTTTGCAT TAGCACAACA CGCGTATGAA ATTCTGATCA 20729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTGGAAA TTATCCGAGT TCTTTTGCAT TAGCACAACA CGCGTATGAA ATTCTGATCA 61 AGCTAACATC ATTTGCAATT CATTGCTTGG AAAGTGATAT CTTAAGCATG AAGCTCATAG 20789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTAACATC ATTTGCAATT CATTGCTTGG AAAGTGATAT CTTAAGCATG AAGCTCATAG 121 CACGGTTAAG ACCCATCCAA ACCTGTACAG CTCTTCGTGA AATTATAGGG CCTCTGCAGT 20849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGGTTAAG ACCCATCCAA ACCTGTACAG CTCTTCGTGA AATTATAGGG CCTCTGCAGT 181 CTCGTTCGTT TCAACCTGAT TTTGTTCCCA GAGATCCTAA TGTCAAGCCC ATAAGGTACA 20909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGTTCGTT TCAACCTGAT TTTGTTCCCA GAGATCCTAA TGTCAAGCCC ATAAGGTACA 241 AATATCCTGC TGCCTATGAT CCATATGGCC CGAGACCCCC ACCATCAGAC AAGATAGTTC 20969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATCCTGC TGCCTATGAT CCATATGGCC CGAGACCCCC ACCATCAGAC AAGATAGTTC 301 AGCTTGCTGA ACGTATTGCT GCTTTAGCCC CAGAAGAACG TAGACAAATT GGTCCTTTAC 21029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGCTGA ACGTATTGCT GCTTTAGCCC CAGAAGAACG TAGACAAATT GGTCCTTTAC 361 TCAGGGAGAT ACTAAGGCAC CCTACTTTGA AACCAATTT 21068 |||||||||| ||||| |||| |||||||||| ||||||||| TCAGGGAGAT ACTAAAGCAC CCTACTTTGA AACCAATTT 400 hqPGS_C09HBa0168F14.1-2+_SGN-E260421+ (20670 21068) ******************************************************************************** EST sequence 74 +strand 395 n (File: SGN-E281948+) 1 GCGTATGAAA TTCTGATCAA GCTAACATCA TTTGCAATTC ATTGCTTGGA AAGTGATATC 61 TTAAGCATGA AGCTCATAGC ACGGTTAAGA CCCATCCAAA CCTGTACAGC TCTTCGTGAA 121 ATTATAGGGC CTCTGCAGTC TCGTTCGTTT CAACCTGATT TTGTTCCCAG AGATCCTAAT 181 GTCAAGCCCA TAAGGTACAA ATATCCTGCT GCCTATGATC CATATGGCCC GAGACCCCCA 241 CCATCAGACA AGATAGTTCA GCTTGCTGAA CGTATTGCTG CTTTAGCCCC AGAAGAACGT 301 AGACAAATTG GTCCTTTACT CAGGGAGATA CTAAGGCACC CTACTTTGAA ACCAATTTCA 361 GTAGAAGGCA TGGATTTGGG TGCAATGGGA GGAGC Predicted gene structure (within gDNA segment 20111 to 21715): Exon 1 20711 21105 ( 395 n); cDNA 1 395 ( 395 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E281948+ 1.000 395 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E281948+ (20711 21105) Alignment (genomic DNA sequence = upper lines): GCGTATGAAA TTCTGATCAA GCTAACATCA TTTGCAATTC ATTGCTTGGA AAGTGATATC 20770 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTATGAAA TTCTGATCAA GCTAACATCA TTTGCAATTC ATTGCTTGGA AAGTGATATC 60 TTAAGCATGA AGCTCATAGC ACGGTTAAGA CCCATCCAAA CCTGTACAGC TCTTCGTGAA 20830 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGCATGA AGCTCATAGC ACGGTTAAGA CCCATCCAAA CCTGTACAGC TCTTCGTGAA 120 ATTATAGGGC CTCTGCAGTC TCGTTCGTTT CAACCTGATT TTGTTCCCAG AGATCCTAAT 20890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAGGGC CTCTGCAGTC TCGTTCGTTT CAACCTGATT TTGTTCCCAG AGATCCTAAT 180 GTCAAGCCCA TAAGGTACAA ATATCCTGCT GCCTATGATC CATATGGCCC GAGACCCCCA 20950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAGCCCA TAAGGTACAA ATATCCTGCT GCCTATGATC CATATGGCCC GAGACCCCCA 240 CCATCAGACA AGATAGTTCA GCTTGCTGAA CGTATTGCTG CTTTAGCCCC AGAAGAACGT 21010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCAGACA AGATAGTTCA GCTTGCTGAA CGTATTGCTG CTTTAGCCCC AGAAGAACGT 300 AGACAAATTG GTCCTTTACT CAGGGAGATA CTAAGGCACC CTACTTTGAA ACCAATTTCA 21070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAAATTG GTCCTTTACT CAGGGAGATA CTAAGGCACC CTACTTTGAA ACCAATTTCA 360 GTAGAAGGCA TGGATTTGGG TGCAATGGGA GGAGC 21105 |||||||||| |||||||||| |||||||||| ||||| GTAGAAGGCA TGGATTTGGG TGCAATGGGA GGAGC 395 hqPGS_C09HBa0168F14.1-2+_SGN-E281948+ (20711 21105) ******************************************************************************** EST sequence 77 +strand 576 n (File: SGN-E259228+) 1 ACGGAGAGAT CCTAATGTCA AGCCCATAAG GTACAAATAT CCTGCTGCCT ATGATCCATA 61 TGGCCCGAGA CCCCCACCAT CAGACAAGAT AGTTCAGCTT GCTGAACGTA TTGCTGCTTT 121 AGCCCCAGAA GAACGTAGAC AAATTGGTCC TTTACTCAGG GAGATACTAA GGCACCCTAC 181 TTTGAAACCA ATTTCAGTAG AAGGCATGGA TTTGGGTGCA ATGGGAGGAG CAGGTGGTGG 241 ACCGGCAAAG GCTGAGGAGA AGAAGGTTGA GAAAACAGCA TTTGACGTGA AGTTAGAGAA 301 ATTTGATGCA GCTGCGAAAA TCAAGGTGAT CAAAGAGGTT AGATCCTTCA CGAGTCTAGG 361 TCTGAAGGAA GCCAAGGACC TTGTCGAAAA GGTTCCTGCT ATACTTAAGC AAGGAGTAAC 421 CAAAGAGGAA GCTAATGAAA TAATAGAAAA GATCAAAGCT GTTGGAGGAG TCGCCGTTAT 481 GGAGTAACAA CAATCTCTGT TGGATTTAGC AGGTTCCCTC ATCCTGCATT TCTTCTTTTT 541 TCACAACGGA ACATGCCAAA ATTAACATAA TTTCTC Predicted gene structure (within gDNA segment 20239 to 22060): Exon 1 20879 21450 ( 572 n); cDNA 5 576 ( 572 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E259228+ 1.000 572 0.993 C PGS_C09HBa0168F14.1-2+_SGN-E259228+ (20879 21450) Alignment (genomic DNA sequence = upper lines): AGAGATCCTA ATGTCAAGCC CATAAGGTAC AAATATCCTG CTGCCTATGA TCCATATGGC 20938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATCCTA ATGTCAAGCC CATAAGGTAC AAATATCCTG CTGCCTATGA TCCATATGGC 64 CCGAGACCCC CACCATCAGA CAAGATAGTT CAGCTTGCTG AACGTATTGC TGCTTTAGCC 20998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGACCCC CACCATCAGA CAAGATAGTT CAGCTTGCTG AACGTATTGC TGCTTTAGCC 124 CCAGAAGAAC GTAGACAAAT TGGTCCTTTA CTCAGGGAGA TACTAAGGCA CCCTACTTTG 21058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAAGAAC GTAGACAAAT TGGTCCTTTA CTCAGGGAGA TACTAAGGCA CCCTACTTTG 184 AAACCAATTT CAGTAGAAGG CATGGATTTG GGTGCAATGG GAGGAGCAGG TGGTGGACCG 21118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCAATTT CAGTAGAAGG CATGGATTTG GGTGCAATGG GAGGAGCAGG TGGTGGACCG 244 GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA ACAGCATTTG ACGTGAAGTT AGAGAAATTT 21178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA ACAGCATTTG ACGTGAAGTT AGAGAAATTT 304 GATGCAGCTG CGAAAATCAA GGTGATCAAA GAGGTTAGAT CCTTCACGAG TCTAGGTCTG 21238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAGCTG CGAAAATCAA GGTGATCAAA GAGGTTAGAT CCTTCACGAG TCTAGGTCTG 364 AAGGAAGCCA AGGACCTTGT CGAAAAGGTT CCTGCTATAC TTAAGCAAGG AGTAACCAAA 21298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGAAGCCA AGGACCTTGT CGAAAAGGTT CCTGCTATAC TTAAGCAAGG AGTAACCAAA 424 GAGGAAGCTA ATGAAATAAT AGAAAAGATC AAAGCTGTTG GAGGAGTCGC CGTTATGGAG 21358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGCTA ATGAAATAAT AGAAAAGATC AAAGCTGTTG GAGGAGTCGC CGTTATGGAG 484 TAACAACAAT CTCTGTTGGA TTTAGCAGGT TCCCTCATCC TGCATTTCTT CTTTTTTCAC 21418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAACAAT CTCTGTTGGA TTTAGCAGGT TCCCTCATCC TGCATTTCTT CTTTTTTCAC 544 AACGGAACAT GCCAAAATTA ACATAATTTC TC 21450 |||||||||| |||||||||| |||||||||| || AACGGAACAT GCCAAAATTA ACATAATTTC TC 576 hqPGS_C09HBa0168F14.1-2+_SGN-E259228+ (20879 21450) ******************************************************************************** EST sequence 99 +strand 406 n (File: SGN-E258766+) 1 ACGGAGAGAT CCTAATGTCA AGCCCATAAG GTACAAATAT CCTGCTGCCT ATGATCCATA 61 TGGCCCGAGA CCCCCACCAT CAGACAAGAT AGTTCAGCTT GCTGAACGTA TTGCTGCTTT 121 AGCCCCAGAA GAACGTAGAC AAATTGGTCC TTTACTCAGG GAGATACTAA GGCACCCTAC 181 TTTGAAACCA ATTTCAGTAG AAGGCATGGA TTTGGGTGCA ATGGGAGGAG CAGGTGGTGG 241 ACCGGCAAAG GCTGAGGAGA AGAAGGTTGA GAAAACAGCA TTTGACGTGA AGTTAGAGAA 301 ATTTGATGCA GCTGCGAAAA TCAAGGTGAT CAAAGAGGTT AGATCCTTCA CGAGTCTAGG 361 TCTGAAGGAA GCCAAGGACC TTGTCGAAAA GGTTCCTGCT ATACTT Predicted gene structure (within gDNA segment 20239 to 21890): Exon 1 20879 21280 ( 402 n); cDNA 5 406 ( 402 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E258766+ 1.000 402 0.990 C PGS_C09HBa0168F14.1-2+_SGN-E258766+ (20879 21280) Alignment (genomic DNA sequence = upper lines): AGAGATCCTA ATGTCAAGCC CATAAGGTAC AAATATCCTG CTGCCTATGA TCCATATGGC 20938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATCCTA ATGTCAAGCC CATAAGGTAC AAATATCCTG CTGCCTATGA TCCATATGGC 64 CCGAGACCCC CACCATCAGA CAAGATAGTT CAGCTTGCTG AACGTATTGC TGCTTTAGCC 20998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAGACCCC CACCATCAGA CAAGATAGTT CAGCTTGCTG AACGTATTGC TGCTTTAGCC 124 CCAGAAGAAC GTAGACAAAT TGGTCCTTTA CTCAGGGAGA TACTAAGGCA CCCTACTTTG 21058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGAAGAAC GTAGACAAAT TGGTCCTTTA CTCAGGGAGA TACTAAGGCA CCCTACTTTG 184 AAACCAATTT CAGTAGAAGG CATGGATTTG GGTGCAATGG GAGGAGCAGG TGGTGGACCG 21118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCAATTT CAGTAGAAGG CATGGATTTG GGTGCAATGG GAGGAGCAGG TGGTGGACCG 244 GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA ACAGCATTTG ACGTGAAGTT AGAGAAATTT 21178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAGGCTG AGGAGAAGAA GGTTGAGAAA ACAGCATTTG ACGTGAAGTT AGAGAAATTT 304 GATGCAGCTG CGAAAATCAA GGTGATCAAA GAGGTTAGAT CCTTCACGAG TCTAGGTCTG 21238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAGCTG CGAAAATCAA GGTGATCAAA GAGGTTAGAT CCTTCACGAG TCTAGGTCTG 364 AAGGAAGCCA AGGACCTTGT CGAAAAGGTT CCTGCTATAC TT 21280 |||||||||| |||||||||| |||||||||| |||||||||| || AAGGAAGCCA AGGACCTTGT CGAAAAGGTT CCTGCTATAC TT 406 hqPGS_C09HBa0168F14.1-2+_SGN-E258766+ (20879 21280) ******************************************************************************** EST sequence 50 +strand 611 n (File: SGN-E353860+) 1 ATTGCTGCTT TAGCCCCAGA AGAACGTAGA CAAATTGGTC CTTTACTCAG GGAGATACTA 61 AGGCACCCTA CTTTGAAACC AATTTCAGTA GAAGGCATGG ATTTGGGTGC AATGGGAGGA 121 GCAGGTGGTG GACCGGCAAA GGCTGAGGAG AAGAAGGTTG AGAAAACAGC ATTTGACGTG 181 AAGTTAGAGA AATTTGATGC AGCTGCGAAA ATCAAGGTGA TCAAAGAGGT TAGATCCTTC 241 ACGAGTCTAG GTCTGAAGGA AGCCAAGGAC CTTGTCGAAA AGGTTCCTGC TATACTTAAG 301 CAAGGAGTAA CCAAAGAGGA AGCTAATGAA ATAATAGAAA AGATCAAAGC TGTTGGAGGA 361 GTCGCCGTTA TGGAGTAACA ACAATCTCTG TTGGATTTAG CAGGTTCCCT CATCCTGCAT 421 TTCTTCTTTT TTCACAACGG AACATGCCAA AATTAACATA ATTTCTCTTT GTTGGATTTA 481 GTTTCTTGGG TTAGGACGAT CACGTTTTGT TTAATAGGTT TCGTGCTTTT TACAGCTTTG 541 AATAGGCATG TTGATTACAA TATTTTGTAT CTGATCTTGC TGCTAGACTG TTAAGAATTC 601 GAAAAAAAAA A Predicted gene structure (within gDNA segment 20384 to 22267): Exon 1 20984 21590 ( 607 n); cDNA 1 607 ( 607 n); score: 0.998 MATCH C09HBa0168F14.1-2+ SGN-E353860+ 0.998 607 0.993 C PGS_C09HBa0168F14.1-2+_SGN-E353860+ (20984 21590) Alignment (genomic DNA sequence = upper lines): ATTGCTGCTT TAGCCCCAGA AGAACGTAGA CAAATTGGTC CTTTACTCAG GGAGATACTA 21043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTGCTT TAGCCCCAGA AGAACGTAGA CAAATTGGTC CTTTACTCAG GGAGATACTA 60 AGGCACCCTA CTTTGAAACC AATTTCAGTA GAAGGCATGG ATTTGGGTGC AATGGGAGGA 21103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCACCCTA CTTTGAAACC AATTTCAGTA GAAGGCATGG ATTTGGGTGC AATGGGAGGA 120 GCAGGTGGTG GACCGGCAAA GGCTGAGGAG AAGAAGGTTG AGAAAACAGC ATTTGACGTG 21163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGGTGGTG GACCGGCAAA GGCTGAGGAG AAGAAGGTTG AGAAAACAGC ATTTGACGTG 180 AAGTTAGAGA AATTTGATGC AGCTGCGAAA ATCAAGGTGA TCAAAGAGGT TAGATCCTTC 21223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTAGAGA AATTTGATGC AGCTGCGAAA ATCAAGGTGA TCAAAGAGGT TAGATCCTTC 240 ACGAGTCTAG GTCTGAAGGA AGCCAAGGAC CTTGTCGAAA AGGTTCCTGC TATACTTAAG 21283 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGTCTAG GTCTGAAGGA AGCCAAGGAC CTTGTCGAAA AGGTTCCTGC TATACTTAAG 300 CAAGGAGTAA CCAAAGAGGA AGCTAATGAA ATAATAGAAA AGATCAAAGC TGTTGGAGGA 21343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGAGTAA CCAAAGAGGA AGCTAATGAA ATAATAGAAA AGATCAAAGC TGTTGGAGGA 360 GTCGCCGTTA TGGAGTAACA ACAATCTCTG TTGGATTTAG CAGGTTCCCT CATCCTGCAT 21403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGCCGTTA TGGAGTAACA ACAATCTCTG TTGGATTTAG CAGGTTCCCT CATCCTGCAT 420 TTCTTCTTTT TTCACAACGG AACATGCCAA AATTAACATA ATTTCTCTTT GTTGGATTTA 21463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTCTTTT TTCACAACGG AACATGCCAA AATTAACATA ATTTCTCTTT GTTGGATTTA 480 GTTTCTTGGG TTAGGACGAT CACGTTTTGT TTAATAGGTT TCGTGCTTTT TACAGCTTTG 21523 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCTTGGG TTAGGACGAT CACGTTTTGT TTAATAGGTT TCGTGCTTTT TACAGCTTTG 540 AATAGGCATG TTGATTACAA TATTTTGTAT CTGATCTTGC TGCTAGACTG TTAAGAATTC 21583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGGCATG TTGATTACAA TATTTTGTAT CTGATCTTGC TGCTAGACTG TTAAGAATTC 600 GAAATAA 21590 |||| || GAAAAAA 607 hqPGS_C09HBa0168F14.1-2+_SGN-E353860+ (20984 21590) ******************************************************************************** EST sequence 5 +strand 496 n (File: SGN-E292488+) 1 AAAACAGCAT TTGACGTGAA GTTAGAGAAA TTTGATGCAG CTGCGAAAAT CAAGGTGATC 61 AAAGAGGTTA GATCCTTCAC GAGTCTAGGT CTGAAGGAAG CCAAGGACCT TGTCGAAAAG 121 GTTCCTGCTA TACTTAAGCA AGGAGTAACC AAAGAGGAAG CTAATGAAAT AATAGAAAAG 181 ATCAAAGCTG TTGGAGGAGT CGCCGTTATG GAGTAACAAC AATCTCTGTT GGATTTAGCA 241 GGTTCCCTCA TCCTGCATTT CTTCTTTTTT CACAACGGAA CATGCCAAAA TTAACATAAT 301 TTCTCTTTGT TGGATTTAGT TTCTTGGGTT AGGACGATCA CGTTTTGTTT AATAGGTTTC 361 GTGCTTTTTA CAGCTTTGAA TAGGCATGTT GATTACAATA TTTTGTATCT GATCTTGCTG 421 CTAGACTGTT AAGAATTCGA AATAATCTCG TGGAATTAAT TTAGGTGCAC TTGAGCTTGC 481 CCCTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 20546 to 22341): Exon 1 21146 21631 ( 486 n); cDNA 1 486 ( 486 n); score: 1.000 PPA cDNA 487 496 MATCH C09HBa0168F14.1-2+ SGN-E292488+ 1.000 486 0.980 C PGS_C09HBa0168F14.1-2+_SGN-E292488+ (21146 21631) Alignment (genomic DNA sequence = upper lines): AAAACAGCAT TTGACGTGAA GTTAGAGAAA TTTGATGCAG CTGCGAAAAT CAAGGTGATC 21205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAGCAT TTGACGTGAA GTTAGAGAAA TTTGATGCAG CTGCGAAAAT CAAGGTGATC 60 AAAGAGGTTA GATCCTTCAC GAGTCTAGGT CTGAAGGAAG CCAAGGACCT TGTCGAAAAG 21265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGTTA GATCCTTCAC GAGTCTAGGT CTGAAGGAAG CCAAGGACCT TGTCGAAAAG 120 GTTCCTGCTA TACTTAAGCA AGGAGTAACC AAAGAGGAAG CTAATGAAAT AATAGAAAAG 21325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCCTGCTA TACTTAAGCA AGGAGTAACC AAAGAGGAAG CTAATGAAAT AATAGAAAAG 180 ATCAAAGCTG TTGGAGGAGT CGCCGTTATG GAGTAACAAC AATCTCTGTT GGATTTAGCA 21385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAGCTG TTGGAGGAGT CGCCGTTATG GAGTAACAAC AATCTCTGTT GGATTTAGCA 240 GGTTCCCTCA TCCTGCATTT CTTCTTTTTT CACAACGGAA CATGCCAAAA TTAACATAAT 21445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCCCTCA TCCTGCATTT CTTCTTTTTT CACAACGGAA CATGCCAAAA TTAACATAAT 300 TTCTCTTTGT TGGATTTAGT TTCTTGGGTT AGGACGATCA CGTTTTGTTT AATAGGTTTC 21505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCTTTGT TGGATTTAGT TTCTTGGGTT AGGACGATCA CGTTTTGTTT AATAGGTTTC 360 GTGCTTTTTA CAGCTTTGAA TAGGCATGTT GATTACAATA TTTTGTATCT GATCTTGCTG 21565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCTTTTTA CAGCTTTGAA TAGGCATGTT GATTACAATA TTTTGTATCT GATCTTGCTG 420 CTAGACTGTT AAGAATTCGA AATAATCTCG TGGAATTAAT TTAGGTGCAC TTGAGCTTGC 21625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGACTGTT AAGAATTCGA AATAATCTCG TGGAATTAAT TTAGGTGCAC TTGAGCTTGC 480 CCCTAA 21631 |||||| CCCTAA 486 hqPGS_C09HBa0168F14.1-2+_SGN-E292488+ (21146 21631) ******************************************************************************** EST sequence 252 -strand 419 n (File: SGN-E369986-) 1 TGCAGCTGCG AAAATCAAGG TGATCAAAGA GGTTAGATCC TTCACGAGTC TAGGTCTGAA 61 GGAAGCCAAG GACCTTGTCG AAAAGGTTCC TGCTATACTT AAGCAAGGAG TAACCAAAGA 121 GGAAGCTAAT GAAATAATAG AAAAGATCAA AGCTGTTGGA GGAGTCGCCG TTATGGAGTA 181 ACAACAATCT CTGTTGGATT TAGCAGGTTC CCTCATCCTG CATTTCTTCT TTTTTCACAA 241 CGGAACATGC CAAAATTAAC ATAATTTCTC TTTGTTGGAT TTAGTTTCTT GGGTTAGGAC 301 GATCACGTTT TGTTTAATAG GTTTCGTGCT TTTTACAGCT TTGAATAGGC ATGTTGATTA 361 CAATATTTTG TATCTGATCT TGCTGCTAGA CTGTTAAGAA TTCGAAATAA AAAAAAAAA Predicted gene structure (within gDNA segment 20571 to 22280): Exon 1 21181 21590 ( 410 n); cDNA 1 410 ( 410 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E369986- 1.000 410 0.979 C PGS_C09HBa0168F14.1-2+_SGN-E369986- (21181 21590) Alignment (genomic DNA sequence = upper lines): TGCAGCTGCG AAAATCAAGG TGATCAAAGA GGTTAGATCC TTCACGAGTC TAGGTCTGAA 21240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGCTGCG AAAATCAAGG TGATCAAAGA GGTTAGATCC TTCACGAGTC TAGGTCTGAA 60 GGAAGCCAAG GACCTTGTCG AAAAGGTTCC TGCTATACTT AAGCAAGGAG TAACCAAAGA 21300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGCCAAG GACCTTGTCG AAAAGGTTCC TGCTATACTT AAGCAAGGAG TAACCAAAGA 120 GGAAGCTAAT GAAATAATAG AAAAGATCAA AGCTGTTGGA GGAGTCGCCG TTATGGAGTA 21360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGCTAAT GAAATAATAG AAAAGATCAA AGCTGTTGGA GGAGTCGCCG TTATGGAGTA 180 ACAACAATCT CTGTTGGATT TAGCAGGTTC CCTCATCCTG CATTTCTTCT TTTTTCACAA 21420 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATCT CTGTTGGATT TAGCAGGTTC CCTCATCCTG CATTTCTTCT TTTTTCACAA 240 CGGAACATGC CAAAATTAAC ATAATTTCTC TTTGTTGGAT TTAGTTTCTT GGGTTAGGAC 21480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAACATGC CAAAATTAAC ATAATTTCTC TTTGTTGGAT TTAGTTTCTT GGGTTAGGAC 300 GATCACGTTT TGTTTAATAG GTTTCGTGCT TTTTACAGCT TTGAATAGGC ATGTTGATTA 21540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCACGTTT TGTTTAATAG GTTTCGTGCT TTTTACAGCT TTGAATAGGC ATGTTGATTA 360 CAATATTTTG TATCTGATCT TGCTGCTAGA CTGTTAAGAA TTCGAAATAA 21590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATTTTG TATCTGATCT TGCTGCTAGA CTGTTAAGAA TTCGAAATAA 410 hqPGS_C09HBa0168F14.1-2+_SGN-E369986- (21181 21590) ******************************************************************************** EST sequence 38 +strand 340 n (File: SGN-E338917+) 1 CCCGGGCTGC TTTAATTCCG CACGAGGGCT ATTTAAATAA TAGAAAAGAT CAAAGCTGTT 61 GGAGGAGTCG CCGCTATGGA GTAACAACAA TCTCTGTTGG ATTTAGCAGG TTCCCTCATC 121 CTGCATTTCT TCTTTTTTCA CAACGGAACA TGCCAAAATT AACATAATTT CTCTTTGTTG 181 GATTTAGTTT CTTGGGTTAG GACGATCACG TTTTGTTTAA TAGGTTTCGT GCTTTTTACA 241 GCTTTGAATA GGCATGTTGA TTACAATATT TTGTATCTGA TCTTGCTGCT AGACTGTTAA 301 CAATTCGAAA TAATCTCGTG GAATTAATTT AAAAAAAAAA Predicted gene structure (within gDNA segment 20372 to 22308): Exon 1 21306 21608 ( 303 n); cDNA 29 331 ( 303 n); score: 0.987 MATCH C09HBa0168F14.1-2+ SGN-E338917+ 0.987 303 0.891 C PGS_C09HBa0168F14.1-2+_SGN-E338917+ (21306 21608) Alignment (genomic DNA sequence = upper lines): CTAATGAAAT AATAGAAAAG ATCAAAGCTG TTGGAGGAGT CGCCGTTATG GAGTAACAAC 21365 ||| | |||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| CTATTTAAAT AATAGAAAAG ATCAAAGCTG TTGGAGGAGT CGCCGCTATG GAGTAACAAC 88 AATCTCTGTT GGATTTAGCA GGTTCCCTCA TCCTGCATTT CTTCTTTTTT CACAACGGAA 21425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCTGTT GGATTTAGCA GGTTCCCTCA TCCTGCATTT CTTCTTTTTT CACAACGGAA 148 CATGCCAAAA TTAACATAAT TTCTCTTTGT TGGATTTAGT TTCTTGGGTT AGGACGATCA 21485 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGCCAAAA TTAACATAAT TTCTCTTTGT TGGATTTAGT TTCTTGGGTT AGGACGATCA 208 CGTTTTGTTT AATAGGTTTC GTGCTTTTTA CAGCTTTGAA TAGGCATGTT GATTACAATA 21545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTTTGTTT AATAGGTTTC GTGCTTTTTA CAGCTTTGAA TAGGCATGTT GATTACAATA 268 TTTTGTATCT GATCTTGCTG CTAGACTGTT AAGAATTCGA AATAATCTCG TGGAATTAAT 21605 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TTTTGTATCT GATCTTGCTG CTAGACTGTT AACAATTCGA AATAATCTCG TGGAATTAAT 328 TTA 21608 ||| TTA 331 hqPGS_C09HBa0168F14.1-2+_SGN-E338917+ (21306 21608) ******************************************************************************** EST sequence 60 +strand 624 n (File: SGN-E542827+) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TTGG Predicted gene structure (within gDNA segment 21251 to 26685): Exon 1 21995 22362 ( 368 n); cDNA 1 368 ( 368 n); score: 0.867 Intron 1 22363 22441 ( 79 n); Pd: 0.000 (s: 0.85), Pa: 0.000 (s: 0.70) Exon 2 22442 22517 ( 76 n); cDNA 369 439 ( 71 n); score: 0.717 Intron 2 22518 23098 ( 581 n); Pd: 0.000 (s: 0.68), Pa: 0.869 (s: 0) Exon 3 23099 23121 ( 23 n); cDNA 440 460 ( 21 n); score: 0.652 Intron 3 23122 23939 ( 818 n); Pd: 0.690 (s: 0), Pa: 0.996 (s: 0) Exon 4 23940 23945 ( 6 n); cDNA 461 466 ( 6 n); score: 0.833 Intron 4 23946 24634 ( 689 n); Pd: 0.000 (s: 0), Pa: 0.617 (s: 0) Exon 5 24635 24665 ( 31 n); cDNA 467 497 ( 31 n); score: 0.677 Intron 5 24666 25559 ( 894 n); Pd: 0.000 (s: 0), Pa: 0.849 (s: 0) Exon 6 25560 25569 ( 10 n); cDNA 498 507 ( 10 n); score: 0.700 MATCH C09HBa0168F14.1-2+ SGN-E542827+ 0.841 514 0.824 C PGS_C09HBa0168F14.1-2+_SGN-E542827+ (21995 22362,22442 22517,23099 23121,23940 23945,24635 24665,25560 25569) Alignment (genomic DNA sequence = upper lines): TTGACTTTTT TTTGTTTTAA TGACTAATTT ATAATTATTA TTTTG--AAT CAAATTTATT 22052 || |||||| ||| |||| |||||||||| |||||||||| ||||| ||| |||||||| | TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTA-T 59 TTATGTTTCA CTAATATTCT TGTAAAATTT ATTGTAGATG ACCAAATTTT TTCTTCGCAT 22112 |||| ||||| |||||||||| ||||||| || |||||||||| |||||| ||| ||||| | || TTATATTTCA CTAATATTCT TGTAAAACTT ATTGTAGATG ACCAAAATTT TTCTTTGAAT 119 ACGAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTA- TTTTTTGT-T CTTTAAACTA 22170 || ||||||| |||||||||| |||||||||| ||||||||| |||||| | | |||||||||| ACCAAATTAA ATTACAATAC ACACAAAAAA AATAGTTTAG TTTTTTTTCT CTTTAAACTA 179 AGGAATGTAA GAAAAAAACA AAATAAGAAT AAGAAACTCA AATAATTATA ATAAAAGAAG 22230 ||||||| | || |||| | |||| ||||| || ||||||| |||||||||| |||||||||| AGGAATG--A -AAGAAAA-A AAATTAGAAT AACAAACTCA AATAATTATA ATAAAAGAAG 235 TCAAAAAATA ATTTATGTAT GAAAAAAATT AAA-ATATAC CTTGAACTTT GATAGAAGAA 22289 ||||| |||| |||||||||| ||||||||| ||| ||| || || ||||||| |||||||||| TCAAACAATA ATTTATGTAT AAAAAAAATT AAATATA-AC CTCGAACTTT GATAGAAGAA 294 TCATATATAC TCCTAAATAT TTTTTTTAAA AAAAAT-AGA ACTAATAAAT ATAAATTTAA 22348 | |||||||| |||||| |||||||||| || ||| | | | |||||||| |||||||||| TAATATATAC CTTTAAATAA TTTTTTTAAA AACAATCAAA AGTAATAAAT ATAAATTTAA 354 AACTAATCTT TTAACTTCCG TTAAATGAAG GGTATATGTG AGCTATTTTG TAACGGCAGG 22408 || |||| || |||| AATTAATTTT TTAA...... .......... .......... .......... .......... 368 GATATATGTG AGCCGTTTGT ATAATGGTAA GGGTATATAT GTGCCACTTT TATAACGAGG 22468 ||||||| |||| ||| | |||||| .......... .......... .......... ...TATATAT TAGCCA-TTT TGTAACGACA 394 GTATATCAGC TCCAATGACA AAGTTGAG-G GTATATCAAA CCTTTTCCCT TAGAATTATA 22527 | | | | | ||||||| || ||||| ||||||||| | |||||| | G--T-GCTG- -CAAATGACA AAATTGAGAA ATATATCAAA CTTTTTCCGT .......... 439 TGTTATCTTC TTTCTCATAT ATACTATCCC TTGTCCACAA AATTCAAAGG AAGACAATCA 22587 .......... .......... .......... .......... .......... .......... 439 CTATTTATCG GTGATGAATT CTTTCTTACG TAATTGGAGA GCTGGTTACG TAAGTTACTA 22647 .......... .......... .......... .......... .......... .......... 439 ACAATTAATG ATCACTTTCT TCCACAAATT GATGAGAGTA AAGAGACGCA AATGTAATGT 22707 .......... .......... .......... .......... .......... .......... 439 TCACTGGTAG ACATAACATG ATATATAATG TAACCTATGA TATATTTTTA TTAATATTAA 22767 .......... .......... .......... .......... .......... .......... 439 AATGTTATAT TGACGGTCTA GATTTATCTA AACTCGGTTA AGTAAAAACA AGCTATCTAA 22827 .......... .......... .......... .......... .......... .......... 439 GTATCAACAT AATTGTAAAA TTAGCAGAAG CTTTATTTTT AAACATACAA CTGATACTAT 22887 .......... .......... .......... .......... .......... .......... 439 AAAATTAGCA ATTTAATTAT AATAATTAGA CGTTAGTTAG AGATCTAATA ATGCCTAATT 22947 .......... .......... .......... .......... .......... .......... 439 AGTAAACAAA TGCAACAAGA TTAGACAATA AATCTTCGTG ATTCCATTAA CAACTCAACA 23007 .......... .......... .......... .......... .......... .......... 439 TACATGTTCG AAAATAGTTC TGCTAGCCCA AAATCATTAA CTAAGATCGG AAAAACAGAT 23067 .......... .......... .......... .......... .......... .......... 439 TGAAATTATT ATTATTTCAT TGATATCACA GGGAATATTA TGAACTTAGC AGAAGTATTA 23127 |||| | | |||||| || | .......... .......... .......... .AAAATA-GA TAAACTTAAA AG-A...... 460 TTTTTAAACT CAGTTCTAAT CTTCAATCAT TAGCTATTTT TAGTACTTAA TTAATAATTA 23187 .......... .......... .......... .......... .......... .......... 460 GGTTAGTTAG AAAACATCCA ATTTTAGAAA CAATCCAATG ATATATATAT ATGTATCTTT 23247 .......... .......... .......... .......... .......... .......... 460 AACTTTTACC AGGTAAATAT TGAATACCTC TGAGATAGAT TTAACTTAAC ATCTTAGATT 23307 .......... .......... .......... .......... .......... .......... 460 TAGAGAAAAG CATAAGAAAA ATGGGAGTGA TGAAAACCAA CATACATGTA GAGAAGTATG 23367 .......... .......... .......... .......... .......... .......... 460 AAAGAATGGC TGAACTACAA GCCTTTGATA AGACGAAAGC CGGTGTTAAG GGACTAGTCG 23427 .......... .......... .......... .......... .......... .......... 460 ATGCAGGTAT AACCAAAGTA CCACGAATGT TTATACAACC ATCGATGATT GAACATTCGA 23487 .......... .......... .......... .......... .......... .......... 460 GGAGTGAAAA CAACAACAAG TTGATCGAGT TTCCAATAAT TGATCTTGAT GGCATCAAGG 23547 .......... .......... .......... .......... .......... .......... 460 AAGATCCGAT CAAACAAAAG AACATAGTCC AAGAAGTTGG TCATGCATCC GAGAGTTGGG 23607 .......... .......... .......... .......... .......... .......... 460 GTTTCTTTCA AGTGATCAAT CATGGGATTC CTAGTCATGT TATGGATGCA ATGAAAGACG 23667 .......... .......... .......... .......... .......... .......... 460 GTGTTACCAG GTTCTTTGAG CAAGATACTG AGGTGAAGAA GCAGTGGTAT ACGCGAGACT 23727 .......... .......... .......... .......... .......... .......... 460 TGAACAAAGA GTTCACATTT AACAGCAATT TTGATCTGTT TAGAGCACCG GTAACCAACT 23787 .......... .......... .......... .......... .......... .......... 460 GGAGGGACAC TTTTCGTGCC ACTATAGCTC CTATACCTCT AAAACCCGAA CAACTCCCTT 23847 .......... .......... .......... .......... .......... .......... 460 CTGTCTGCAG GTATTATGGA GAAACAACGT TGTTATAGAG AGGTTTGAAT ATTGTTTTGT 23907 .......... .......... .......... .......... .......... .......... 460 GTTTTGATTT GCTTATTGTG CATTTGTGAT AGAGATATTC TCCTCGAGTA CACGAACCAA 23967 ||||| .......... .......... .......... ..GGATAT.. .......... .......... 466 GTGATGAAAT TAGGTGAAAC TCTATTTGAA CTAGTGTCCG AGGCTGTTGG CCTCGAACCA 24027 .......... .......... .......... .......... .......... .......... 466 AATCACCTCA AGGATATGGG TTGTGCAGAG GGGCTTCTTG CTTTAGGCCA ATATTATCCA 24087 .......... .......... .......... .......... .......... .......... 466 GCATGCCCAC AACCTGAACT TACTCTAGGC ACCAGTAAGC ATGCTGACAA CGACTTCCTC 24147 .......... .......... .......... .......... .......... .......... 466 ACCGTGCTTC TCCAAGACAA CATAGGCGGT CTTCAAGTCT TACATCAGAG CCATTGGGTA 24207 .......... .......... .......... .......... .......... .......... 466 GATGTTCCCC CTACTCCCGG AGCACTCGTG GTCAATATAG GAGATCTTCT ACAGGCAAGT 24267 .......... .......... .......... .......... .......... .......... 466 AGTGTTACAT TTTGAGTACT GTTAGAAACA TTATTGTCTT ATAACATATG AGATTGTTGA 24327 .......... .......... .......... .......... .......... .......... 466 CTCGATCATT TTCAGCTTAT AACGAATGAC AAGTTCAAAA GTGTTGATCA TAGAGTACTG 24387 .......... .......... .......... .......... .......... .......... 466 GCTAATAAGG TCGGTCCAAG GGTATCGTTG GCATGCTTCT TCATGACGAA TTGTATGACA 24447 .......... .......... .......... .......... .......... .......... 466 ACACATAGGA TGTATGGACC TATAAAGGAG CTGATATCGG AACAGAACCC TCCGAAGTAC 24507 .......... .......... .......... .......... .......... .......... 466 AGGGAAACAA CGATTAAGGA GTTCACAACT TATTTCAATA ACAAAGGGCT GGATGGCACT 24567 .......... .......... .......... .......... .......... .......... 466 TCCACTCTGT TGCATTTTAG ACTCTAAATC ATCGCGATTG TAACAGGTAA TGCATGTGTT 24627 .......... .......... .......... .......... .......... .......... 466 GGAATAGTTG TAAACATCAA TAAAGATACA AGTTGATAAC AATATGAAGA AAGGAGCAGA 24687 ||| |||||| || ||| | || | ||| .......TTG TAAACAACAC AAAATCTTCA ATCAAATA.. .......... .......... 497 TAAAGACTAA AAAAATGTAT TCATATATGA AATAAGAAAA ACAAATCCTA ACTAGACATA 24747 .......... .......... .......... .......... .......... .......... 497 ATTAAACAAA TATCAAAAAT AACAAATCCT AAATTACTGG TTTTAGGCTA AATACTTGAA 24807 .......... .......... .......... .......... .......... .......... 497 CAAATTTGGG TTCTCTTCAT CTCTTTCCAA GTATTCTCTA GTGATGAGAT CTTCTATCTG 24867 .......... .......... .......... .......... .......... .......... 497 CTTTTTGATT GCTTTTAAGT CAGGCTTGAA CATGGAGCTC AACTGCTCAA CACACTCTGC 24927 .......... .......... .......... .......... .......... .......... 497 TACTAGTTGT TGATGAGGAA GAACCTTTCG ACTCTTCATA ATACGTACTA TACATGCATC 24987 .......... .......... .......... .......... .......... .......... 497 GATTGCATAA CGTCTATCTT TGCCTACATC CTCCACCACC TTTTTCCTTT CATCCACAAG 25047 .......... .......... .......... .......... .......... .......... 497 AGGTAACGGT ACCCTAACCC GTCTCATCCT GTCAGTGAAC TTGGAGTTGA ACTCGAAATG 25107 .......... .......... .......... .......... .......... .......... 497 ATCAGATGAT GTAACAGTTG CATTGCTAGG ATCTTTAATC AGAATTTTAT ACTTAGCACA 25167 .......... .......... .......... .......... .......... .......... 497 TGAAAGAGAT TGAAGCAATC TGATCAAGTC ATCATCAGCT AAATTTAACT GACTTTTGAT 25227 .......... .......... .......... .......... .......... .......... 497 TTCCGAGTAA CTCAATCTAT CTGACGAATT AAACAATGAC AGAACAGCAG CCTGATAGGT 25287 .......... .......... .......... .......... .......... .......... 497 TCCCAGAATC AATTCAATGG TTTTTGAATC AAACTTCCCA ATGACGTTAC ACGTACCCAA 25347 .......... .......... .......... .......... .......... .......... 497 TGAATAAATC CATGTCAGTT TCCTGTGTTT CGTTGTTGTC TGATAGAATT CGTTGAAGAC 25407 .......... .......... .......... .......... .......... .......... 497 TTGTACACAC TTAGCCATCT CGACAGGTAG ACTCAAATCA CAAGATTTAT AGCTAGGCCA 25467 .......... .......... .......... .......... .......... .......... 497 GAACCCACTT GTAAGTACTG TGACAGTTAG ATCAATTCCA GTACTCGCGT TGTTGCTGAG 25527 .......... .......... .......... .......... .......... .......... 497 ATATTCTTGA AAATCGTTCT GATTTTCCTT AGCTAACGTC AA 25569 | || || || .......... .......... .......... ..CAAAGTTC AA 507 hqPGS_C09HBa0168F14.1-2+_SGN-E542827+ (21995 22362,22442 22517) ******************************************************************************** EST sequence 125 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 21598 to 29141): Exon 1 22208 22528 ( 321 n); cDNA 1 324 ( 324 n); score: 0.833 Intron 1 22529 24342 (1814 n); Pd: 0.198 (s: 0.77), Pa: 0.973 (s: 0) Exon 2 24343 24369 ( 27 n); cDNA 325 351 ( 27 n); score: 0.481 Intron 2 24370 26061 (1692 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 26062 26087 ( 26 n); cDNA 352 377 ( 26 n); score: 0.615 Intron 3 26088 27838 (1751 n); Pd: 0.959 (s: 0), Pa: 0.000 (s: 0.68) Exon 4 27839 27965 ( 127 n); cDNA 378 504 ( 127 n); score: 0.728 MATCH C09HBa0168F14.1-2+ SGN-E578389- 0.804 501 0.715 C PGS_C09HBa0168F14.1-2+_SGN-E578389- (22208 22528,24343 24369,26062 26087,27839 27965) Alignment (genomic DNA sequence = upper lines): TCAAATAATT ATAATAAAAG AAGTCA-AAA AATAATTTAT GTATGAAAAA AA-TTAAAAT 22265 |||||||||| ||||||| | |||||| ||| |||||||||| |||| ||||| || || |||| TCAAATAATT ATAATAA-AT AAGTCAAAAA AATAATTTAT GTATTAAAAA AATTTGAAAT 59 ATACCTTGAA CTTTGATAGA AGAATCATAT ATACTCCTAA ATATTTTTTT TAAAAAAAAT 22325 |||||||||| |||||| | | |||||||||| || | ||||| |||| ||||| | |||| | ATACCTTGAA CTTTGAAAAA AGAATCATAT ATGCCCCTAA ATATATTTTT TTTTAAAATT 119 AGAACTAATA AATATAAATT TAAAACTAAT CTTTTAACTT CCGTTAAATG AAGGGTATAT 22385 | || ||| | | |||||||| ||||| |||| |||| |||| ||||||||| |||||||||| A-AAGTAA-A ATTATAAATT TAAAAGTAAT TTTTTCACTT TCGTTAAATG AAGGGTATAT 177 GTGAGCT-AT TTTGTAACGG CAGGGATATA TGTGAGCCGT TTGTATAATG GTAAGGGTAT 22444 |||||| || |||||||||| ||| | |||| ||||| || | |||||||| | |||||||||| ATGAGCTCAT TTTGTAACGG CAGAGGTATA TGTGAACCAT TTGTATAACG GTAAGGGTAT 237 ATATGTGCCA CTTTTATAAC GA-GGGTATA TCAG-CTCCA ATGACAAAGT TGA-GGGTAT 22501 ||||| |||| |||| ||||| || ||||||| |||| || | |||||||||| ||| |||||| ATATGAGCCA CTTTCATAAC GAGGGGTATA TCAGTTTCAA ATGACAAAGT TGAGGGGTAT 297 ATCA-AACCT TTTCCCTTAG AATTATATGT TATCTTCTTT CTCATATATA CTATCCCTTG 22560 |||| | ||| |||||| || ||||| | ATCATACCCT TTTCCCATAA TATTAT-T.. .......... .......... .......... 324 TCCACAAAAT TCAAAGGAAG ACAATCACTA TTTATCGGTG ATGAATTCTT TCTTACGTAA 22620 .......... .......... .......... .......... .......... .......... 324 TTGGAGAGCT GGTTACGTAA GTTACTAACA ATTAATGATC ACTTTCTTCC ACAAATTGAT 22680 .......... .......... .......... .......... .......... .......... 324 GAGAGTAAAG AGACGCAAAT GTAATGTTCA CTGGTAGACA TAACATGATA TATAATGTAA 22740 .......... .......... .......... .......... .......... .......... 324 CCTATGATAT ATTTTTATTA ATATTAAAAT GTTATATTGA CGGTCTAGAT TTATCTAAAC 22800 .......... .......... .......... .......... .......... .......... 324 TCGGTTAAGT AAAAACAAGC TATCTAAGTA TCAACATAAT TGTAAAATTA GCAGAAGCTT 22860 .......... .......... .......... .......... .......... .......... 324 TATTTTTAAA CATACAACTG ATACTATAAA ATTAGCAATT TAATTATAAT AATTAGACGT 22920 .......... .......... .......... .......... .......... .......... 324 TAGTTAGAGA TCTAATAATG CCTAATTAGT AAACAAATGC AACAAGATTA GACAATAAAT 22980 .......... .......... .......... .......... .......... .......... 324 CTTCGTGATT CCATTAACAA CTCAACATAC ATGTTCGAAA ATAGTTCTGC TAGCCCAAAA 23040 .......... .......... .......... .......... .......... .......... 324 TCATTAACTA AGATCGGAAA AACAGATTGA AATTATTATT ATTTCATTGA TATCACAGGG 23100 .......... .......... .......... .......... .......... .......... 324 AATATTATGA ACTTAGCAGA AGTATTATTT TTAAACTCAG TTCTAATCTT CAATCATTAG 23160 .......... .......... .......... .......... .......... .......... 324 CTATTTTTAG TACTTAATTA ATAATTAGGT TAGTTAGAAA ACATCCAATT TTAGAAACAA 23220 .......... .......... .......... .......... .......... .......... 324 TCCAATGATA TATATATATG TATCTTTAAC TTTTACCAGG TAAATATTGA ATACCTCTGA 23280 .......... .......... .......... .......... .......... .......... 324 GATAGATTTA ACTTAACATC TTAGATTTAG AGAAAAGCAT AAGAAAAATG GGAGTGATGA 23340 .......... .......... .......... .......... .......... .......... 324 AAACCAACAT ACATGTAGAG AAGTATGAAA GAATGGCTGA ACTACAAGCC TTTGATAAGA 23400 .......... .......... .......... .......... .......... .......... 324 CGAAAGCCGG TGTTAAGGGA CTAGTCGATG CAGGTATAAC CAAAGTACCA CGAATGTTTA 23460 .......... .......... .......... .......... .......... .......... 324 TACAACCATC GATGATTGAA CATTCGAGGA GTGAAAACAA CAACAAGTTG ATCGAGTTTC 23520 .......... .......... .......... .......... .......... .......... 324 CAATAATTGA TCTTGATGGC ATCAAGGAAG ATCCGATCAA ACAAAAGAAC ATAGTCCAAG 23580 .......... .......... .......... .......... .......... .......... 324 AAGTTGGTCA TGCATCCGAG AGTTGGGGTT TCTTTCAAGT GATCAATCAT GGGATTCCTA 23640 .......... .......... .......... .......... .......... .......... 324 GTCATGTTAT GGATGCAATG AAAGACGGTG TTACCAGGTT CTTTGAGCAA GATACTGAGG 23700 .......... .......... .......... .......... .......... .......... 324 TGAAGAAGCA GTGGTATACG CGAGACTTGA ACAAAGAGTT CACATTTAAC AGCAATTTTG 23760 .......... .......... .......... .......... .......... .......... 324 ATCTGTTTAG AGCACCGGTA ACCAACTGGA GGGACACTTT TCGTGCCACT ATAGCTCCTA 23820 .......... .......... .......... .......... .......... .......... 324 TACCTCTAAA ACCCGAACAA CTCCCTTCTG TCTGCAGGTA TTATGGAGAA ACAACGTTGT 23880 .......... .......... .......... .......... .......... .......... 324 TATAGAGAGG TTTGAATATT GTTTTGTGTT TTGATTTGCT TATTGTGCAT TTGTGATAGA 23940 .......... .......... .......... .......... .......... .......... 324 GATATTCTCC TCGAGTACAC GAACCAAGTG ATGAAATTAG GTGAAACTCT ATTTGAACTA 24000 .......... .......... .......... .......... .......... .......... 324 GTGTCCGAGG CTGTTGGCCT CGAACCAAAT CACCTCAAGG ATATGGGTTG TGCAGAGGGG 24060 .......... .......... .......... .......... .......... .......... 324 CTTCTTGCTT TAGGCCAATA TTATCCAGCA TGCCCACAAC CTGAACTTAC TCTAGGCACC 24120 .......... .......... .......... .......... .......... .......... 324 AGTAAGCATG CTGACAACGA CTTCCTCACC GTGCTTCTCC AAGACAACAT AGGCGGTCTT 24180 .......... .......... .......... .......... .......... .......... 324 CAAGTCTTAC ATCAGAGCCA TTGGGTAGAT GTTCCCCCTA CTCCCGGAGC ACTCGTGGTC 24240 .......... .......... .......... .......... .......... .......... 324 AATATAGGAG ATCTTCTACA GGCAAGTAGT GTTACATTTT GAGTACTGTT AGAAACATTA 24300 .......... .......... .......... .......... .......... .......... 324 TTGTCTTATA ACATATGAGA TTGTTGACTC GATCATTTTC AGCTTATAAC GAATGACAAG 24360 | | | | |||| | .......... .......... .......... .......... ..CATTTTTG GGTTGACGGG 342 TTCAAAAGTG TTGATCATAG AGTACTGGCT AATAAGGTCG GTCCAAGGGT ATCGTTGGCA 24420 | || | TCAAACCTT. .......... .......... .......... .......... .......... 351 TGCTTCTTCA TGACGAATTG TATGACAACA CATAGGATGT ATGGACCTAT AAAGGAGCTG 24480 .......... .......... .......... .......... .......... .......... 351 ATATCGGAAC AGAACCCTCC GAAGTACAGG GAAACAACGA TTAAGGAGTT CACAACTTAT 24540 .......... .......... .......... .......... .......... .......... 351 TTCAATAACA AAGGGCTGGA TGGCACTTCC ACTCTGTTGC ATTTTAGACT CTAAATCATC 24600 .......... .......... .......... .......... .......... .......... 351 GCGATTGTAA CAGGTAATGC ATGTGTTGGA ATAGTTGTAA ACATCAATAA AGATACAAGT 24660 .......... .......... .......... .......... .......... .......... 351 TGATAACAAT ATGAAGAAAG GAGCAGATAA AGACTAAAAA AATGTATTCA TATATGAAAT 24720 .......... .......... .......... .......... .......... .......... 351 AAGAAAAACA AATCCTAACT AGACATAATT AAACAAATAT CAAAAATAAC AAATCCTAAA 24780 .......... .......... .......... .......... .......... .......... 351 TTACTGGTTT TAGGCTAAAT ACTTGAACAA ATTTGGGTTC TCTTCATCTC TTTCCAAGTA 24840 .......... .......... .......... .......... .......... .......... 351 TTCTCTAGTG ATGAGATCTT CTATCTGCTT TTTGATTGCT TTTAAGTCAG GCTTGAACAT 24900 .......... .......... .......... .......... .......... .......... 351 GGAGCTCAAC TGCTCAACAC ACTCTGCTAC TAGTTGTTGA TGAGGAAGAA CCTTTCGACT 24960 .......... .......... .......... .......... .......... .......... 351 CTTCATAATA CGTACTATAC ATGCATCGAT TGCATAACGT CTATCTTTGC CTACATCCTC 25020 .......... .......... .......... .......... .......... .......... 351 CACCACCTTT TTCCTTTCAT CCACAAGAGG TAACGGTACC CTAACCCGTC TCATCCTGTC 25080 .......... .......... .......... .......... .......... .......... 351 AGTGAACTTG GAGTTGAACT CGAAATGATC AGATGATGTA ACAGTTGCAT TGCTAGGATC 25140 .......... .......... .......... .......... .......... .......... 351 TTTAATCAGA ATTTTATACT TAGCACATGA AAGAGATTGA AGCAATCTGA TCAAGTCATC 25200 .......... .......... .......... .......... .......... .......... 351 ATCAGCTAAA TTTAACTGAC TTTTGATTTC CGAGTAACTC AATCTATCTG ACGAATTAAA 25260 .......... .......... .......... .......... .......... .......... 351 CAATGACAGA ACAGCAGCCT GATAGGTTCC CAGAATCAAT TCAATGGTTT TTGAATCAAA 25320 .......... .......... .......... .......... .......... .......... 351 CTTCCCAATG ACGTTACACG TACCCAATGA ATAAATCCAT GTCAGTTTCC TGTGTTTCGT 25380 .......... .......... .......... .......... .......... .......... 351 TGTTGTCTGA TAGAATTCGT TGAAGACTTG TACACACTTA GCCATCTCGA CAGGTAGACT 25440 .......... .......... .......... .......... .......... .......... 351 CAAATCACAA GATTTATAGC TAGGCCAGAA CCCACTTGTA AGTACTGTGA CAGTTAGATC 25500 .......... .......... .......... .......... .......... .......... 351 AATTCCAGTA CTCGCGTTGT TGCTGAGATA TTCTTGAAAA TCGTTCTGAT TTTCCTTAGC 25560 .......... .......... .......... .......... .......... .......... 351 TAACGTCAAG TCTGTTACCA TTCCCTCCAT CTTTGATGTA AACTGTCCAC CACAATACTG 25620 .......... .......... .......... .......... .......... .......... 351 CTTTAGCTTC GTTAACATAA GCCTTTCGTG TTCATCATTA GCACATTTAC TAAAGAGCAA 25680 .......... .......... .......... .......... .......... .......... 351 TCTACGAGAA AGCTTCTTCC TGCAGAACTC TCCAAAAAGG TCTTTGTCAT TAATGTACGC 25740 .......... .......... .......... .......... .......... .......... 351 GAGAAGCTTT ACCACCTTAT CCAACGTCTC CTCGATAGCA TCATCACTAA GTTTTTCACT 25800 .......... .......... .......... .......... .......... .......... 351 TCCACCTTTC TTGAGAATAC TATCACAATA CGAAGCAAGG AGCTCTGCAC TTGAACAACC 25860 .......... .......... .......... .......... .......... .......... 351 CGATACAATC TTGTTACAAA ACACCTCAAA TGCCTCCTTG AGAGCCTTAT GAAACAGAGA 25920 .......... .......... .......... .......... .......... .......... 351 GTGATTAGCA AAACAGCTCG TAACATAACT CATATACTTA TCGTAAAGCT CAATGACCTT 25980 .......... .......... .......... .......... .......... .......... 351 CCTAACAAAG AAGGGAGTTT CAGACTGTCT ATTTGTCGTA TCATCAGCCT GTTGCACTAA 26040 .......... .......... .......... .......... .......... .......... 351 GTACATCCCT TCAGCAACGA CGTGCTGCTT AAACATAGCT GAAACAGGTA CCAATCCCTT 26100 | ||||||| | | | | | || | .......... .......... .GGGCTGCTT AGGACTTGAT TAGACCG... .......... 377 GTCGATTTTG TAGAACAGCC TATACATTCG AGATAAATCA TCTACCTTAT CATCTCTAAG 26160 .......... .......... .......... .......... .......... .......... 377 CAATACTCGA ATTCCAGAAT GCTCCTTCTC GAGTAACTGA TTCGTATATA CAACCAACAA 26220 .......... .......... .......... .......... .......... .......... 377 TTCATATCGC ACTTTCTCTA AAAGTTTCGA CTCACTAACA ACATGGAGAT AATTCGATAC 26280 .......... .......... .......... .......... .......... .......... 377 TCTCTCTTTC TCCTTCTTCA AACACTCCTC TGCGTTCAAC ATATAATCAG GACACGAATC 26340 .......... .......... .......... .......... .......... .......... 377 TTCCCCAATC CAACTTGAAG CTTTACGAGA GTAATAACCT GCAGTATCTT CAAGCATTGC 26400 .......... .......... .......... .......... .......... .......... 377 AAATTCAAAA TCATTCACGT AGCACTCCAT ATTCCCCATC CCAACTGCAA CGAATATATC 26460 .......... .......... .......... .......... .......... .......... 377 AACCACACTC TTCAATAAAC TTCTGTCAAT CTTCTCCCCA TCTCGTTCTC GTTCAATCAA 26520 .......... .......... .......... .......... .......... .......... 377 CACAAAAACC ACATCTCTAG CTTTAACTTT CAATTCCTCG TAAACCAGAT CACGAAAACA 26580 .......... .......... .......... .......... .......... .......... 377 CATCAAACCA ACTTCCTTGA GTCCAGGTAG AGATTTTGCA TTAATAAAAA AACGTTCCAG 26640 .......... .......... .......... .......... .......... .......... 377 GTATTGGAAG AAACGCGAGA GCCACCGAAT CATAACTTTG TGATTCGCCC ATCGTTTCAC 26700 .......... .......... .......... .......... .......... .......... 377 AATCTCCTTC AATAGGAACT CATCGTGTCT GTCTCGTAAA CAGGGCAGTA CAGTAGAATC 26760 .......... .......... .......... .......... .......... .......... 377 GATGTATTCT ACAAATACTT GCTTGTAGTT TTCATACAAC TGTTTTGAGT GATTATTAAT 26820 .......... .......... .......... .......... .......... .......... 377 ATATGGCGGC GGCATACTCT GTGTACACAT GTTGAATATT GTTGTATAGA GCATCATATA 26880 .......... .......... .......... .......... .......... .......... 377 CTCTTCGGAA TCGAAACAAA TTTCTTCTTC TTCTTGTAAA ATTTTCTTCA ACTTAGTGAT 26940 .......... .......... .......... .......... .......... .......... 377 TCCCTTCTCC ATAAATTCCC ATCCATCCTC AAACTCGATA ATCTTCACCT CGCTCATCGC 27000 .......... .......... .......... .......... .......... .......... 377 CGACTTAGTT TATGTCTACG TCCACCGGAG AAAAGGATCG ATCACCGGAG AACTGAATCA 27060 .......... .......... .......... .......... .......... .......... 377 CTGTCGCCGG AGAGTTTATG AGTAAAAAAG TTGTTGAATG TGACTTCAAT TTCTTACGTC 27120 .......... .......... .......... .......... .......... .......... 377 TACGTCCACC GGAGAGAAGG ATCGATCACC GGAGAGCTGA ATCACAGTCG CCGGAGAGTT 27180 .......... .......... .......... .......... .......... .......... 377 TATGAGTAAA AAAGTTGTTG AATGTGTGAC TTCAATTTCT GTAAATAATA TGTTTATTTA 27240 .......... .......... .......... .......... .......... .......... 377 TTTATAATAG TAAGAAACCA AATTAAACTA TGAATAGAAA ATCTATTCAT TTATGAATTA 27300 .......... .......... .......... .......... .......... .......... 377 AGACAAATAA AAACAATAAT TGAATAAATA CCAAAAATAA CAAATTATAA ATAAATTTAG 27360 .......... .......... .......... .......... .......... .......... 377 GGTTTTGATT TCAATTTTTG AATTGTTTTT TTCTTTTTCC TTGAGTGATA AATAATCTTT 27420 .......... .......... .......... .......... .......... .......... 377 GTAAGTCAAA AAAGAAATAA ACTTGATATT TTTTCATCTC TACAAAATAT TATAAGTCAG 27480 .......... .......... .......... .......... .......... .......... 377 TCTCATTCTA AAAAAATACT TGAATGGCAA TGTATGTCAT TTTATAAAAT TCACGCATAA 27540 .......... .......... .......... .......... .......... .......... 377 AACATATGAT TGATTAATTA ATTAATCTTT TTAAATGTAT TTATGTTGAC TATACTTGGA 27600 .......... .......... .......... .......... .......... .......... 377 AATGTACAAC TAATTAAATA AGGACATAAG GATAAAATTA TCTTGTTTCT TAATGCAAGT 27660 .......... .......... .......... .......... .......... .......... 377 GCAAGTGAAA AAGATGATTT ATAATATGGG ACGGAGGGAG TAATAGACAA AGTTACGTGT 27720 .......... .......... .......... .......... .......... .......... 377 TATATTTGTG GGATATCTCA TCTTATTCGT CACGTTAGGA TTATTTTATG AAAATACTTA 27780 .......... .......... .......... .......... .......... .......... 377 TTTAATTACG TTGTATTTTT ATAAAATACT GATTTATTAT ATAGTTTGAA ATAATCACAT 27840 | .......... .......... .......... .......... .......... ........CT 379 ATTGT-CTAA CTAATTAATA ATTGAGTAAC TTTCACATGT AGTAAACATA AGAATCATAT 27899 ||| | | | || ||||| | || | ||| |||||||| | | ||||| | | | |||||| ATTTTATTGA CTCTTTAATT AATGGGCAAC TTTCACATAT AACAAACAAA AAATTCATAT 439 TTTAATGTTA TAGTTATAAT TTGCATAATT GTGCTCCATA ACAAATATAA ATATGTATAT 27959 || ||| || || | | | |||||||||| | |||||||| |||| |||| | |||||| TTGTATGCTA TA-ACAAAGT TTGCATAATT GCGCTCCATA GCAAACATAA AATTGTATAA 498 TTTACT 27965 || || TTCGCT 504 hqPGS_C09HBa0168F14.1-2+_SGN-E578389- (22208 22528,24343 24369,26062 26087,27839 27965) ******************************************************************************** EST sequence 56 +strand 460 n (File: SGN-E243215+) 1 TTATTGTAGA TGACCAATTT TTTCTTCGAA TACGAAATTA AATTACAATA CACACAAAAA 61 AAATATTTGA ATTTTTTTTA TTTAAACTAA GGAATGAAAG AAAAAAACAA AATAAGAATA 121 AGAAACTCAA ATTATTATAA TAAAAGAAGT CAAAAAATAA TTTTTGTATG AAAAAATTAA 181 AATATACCTT GAACTTTGAT AGAAGAATCA TATATATCCC TAAATATTTT TTTTAAAAAA 241 AAATTAGAAG TAACAAATAT AAATTTAAAA CTAATTTTTT AACTTTCGTT AAATGAAGGG 301 TATATGTGAG CCATTTTCTA ACGGCAGGGG TATATGTGAG CCGTTTGTAT AACGATAAGG 361 GCATATATGA ACCACTTTTA TTACGAGGGA TATATCAGCT CTAAATGACA AAGTTGAGAG 421 GTATATCAGA CCCTTTTCCC TATTTTTTAA AATTTCATAC Predicted gene structure (within gDNA segment 21481 to 24491): Exon 1 22081 22496 ( 416 n); cDNA 1 418 ( 418 n); score: 0.911 MATCH C09HBa0168F14.1-2+ SGN-E243215+ 0.911 416 0.904 C PGS_C09HBa0168F14.1-2+_SGN-E243215+ (22081 22496) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGACCAAATT TTTTCTTCGC ATACGAAATT AAATTACAAT ACACACAAAA 22140 |||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| |||||||||| TTATTGTAGA TGACC-AATT TTTTCTTCGA ATACGAAATT AAATTACAAT ACACACAAAA 59 AAAATAGTTT ATTTTTTGTT CTTTAAACTA AGGAATGTAA GAAAAAAACA AAATAAGAAT 22200 |||||| || | ||||| || ||||||||| ||||||| || |||||||||| |||||||||| AAAATATTTG AATTTTTTTT ATTTAAACTA AGGAATGAAA GAAAAAAACA AAATAAGAAT 119 AAGAAACTCA AATAATTATA ATAAAAGAAG TCAAAAAATA ATTTATGTAT GAAAAAAATT 22260 |||||||||| ||| |||||| |||||||||| |||||||||| |||| ||||| | |||||||| AAGAAACTCA AATTATTATA ATAAAAGAAG TCAAAAAATA ATTTTTGTAT G-AAAAAATT 178 AAAATATACC TTGAACTTTG ATAGAAGAAT CATATATACT CCTAAATATT TTTTTT-AAA 22319 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| |||||| ||| AAAATATACC TTGAACTTTG ATAGAAGAAT CATATATATC CCTAAATATT TTTTTTAAAA 238 AAAAA-TAGA ACTAATAAAT ATAAATTTAA AACTAATCTT TTAACTTCCG TTAAATGAAG 22378 ||||| |||| | ||| |||| |||||||||| ||||||| || ||||||| || |||||||||| AAAAATTAGA AGTAACAAAT ATAAATTTAA AACTAATTTT TTAACTTTCG TTAAATGAAG 298 GGTATATGTG AGCTATTTTG TAACGGCAGG GATATATGTG AGCCGTTTGT ATAATGGTAA 22438 |||||||||| ||| ||||| |||||||||| | |||||||| |||||||||| |||| | ||| GGTATATGTG AGCCATTTTC TAACGGCAGG GGTATATGTG AGCCGTTTGT ATAACGATAA 358 GGGTATATAT GTGCCACTTT TATAACGAGG G-TATATCAG CTC-CAATGA CAAAGTTGAG 22496 ||| |||||| | ||||||| ||| |||||| | |||||||| ||| ||||| |||||||||| GGGCATATAT GAACCACTTT TATTACGAGG GATATATCAG CTCTAAATGA CAAAGTTGAG 418 hqPGS_C09HBa0168F14.1-2+_SGN-E243215+ (22081 22496) ******************************************************************************** EST sequence 97 +strand 737 n (File: SGN-E344752+) 1 TTTTACTTCA AATATCAGCT AAGAAAAAAA TGGAGTTGAT CAACACAACT GAAGTCCAGG 61 TTCCAAGAGA AGCAAAGTAT GACAGGAAGG CTGAACTACA AGCTTTTGAT GAGACGAAAA 121 CCGGTGTTAA GGGACTAGTC GATACAGGTA TCACTAAAGT ACCAAGAATG TTTGTTCAAC 181 CGTCAAGGAT TGAAGATTCA ACAATTCACA GCAACAAGAA GTTCAGTTTT CCAATAATTG 241 ATCTTGATGG TATCAAGGAA AATTCGATCA AACGAAAGAA CATAGTCCAG GAAGTCGGTC 301 AAGCATCCGA GACTTGGGGA TTCTTTCAAG TGATCAATCA TGGGATTCCT AGTCATCTTC 361 TGGAGGAAAT GAAAGACGGT GTTCTCAGTT TCTTTGAACA AGATACCGAG GAGAAGAAAC 421 AGTGGTATAC GCGAGATTTG ACAAAAGTGT TTACGTTTAA CAGCAATTTC GACCTGTTTG 481 GAGCACCAGT AACCAACTGG AGAGACACTT TTACTGCTAC CACAGCTCCT ATACCTCCAA 541 AACCTGAAGA ATTACCTTCT GTTTGCAGGG ATGTTCTCCT TGAGTACACA AACCAAGTGA 601 TGAAATTAGG TGATACTCTA TTTGAAATAC TGGCTGAAGC TATTGGCCTC GAACCAAATA 661 CCTCAGGACA TGGGGTTGTG CCGAGGGGCT AATGGCGTTA GGCCATTATT ATCCAGCATG 721 CCCACACCAG AACTAAC Predicted gene structure (within gDNA segment 19810 to 27822): Exon 1 23361 23857 ( 497 n); cDNA 75 568 ( 494 n); score: 0.857 Intron 1 23858 23939 ( 82 n); Pd: 0.936 (s: 0.84), Pa: 0.996 (s: 0.90) Exon 2 23940 24110 ( 171 n); cDNA 569 737 ( 169 n); score: 0.851 MATCH C09HBa0168F14.1-2+ SGN-E344752+ 0.856 668 0.906 C PGS_C09HBa0168F14.1-2+_SGN-E344752+ (23361 23857,23940 24110) Alignment (genomic DNA sequence = upper lines): AAGTATGAAA GAATGGCTGA ACTACAAGCC TTTGATAAGA CGAAAGCCGG TGTTAAGGGA 23420 |||||||| | | | |||||| ||||||||| |||||| ||| ||||| |||| |||||||||| AAGTATGACA GGAAGGCTGA ACTACAAGCT TTTGATGAGA CGAAAACCGG TGTTAAGGGA 134 CTAGTCGATG CAGGTATAAC CAAAGTACCA CGAATGTTTA TACAACCATC GATGATTGAA 23480 ||||||||| ||||||| || ||||||||| |||||||| | ||||| || | ||||||| CTAGTCGATA CAGGTATCAC TAAAGTACCA AGAATGTTTG TTCAACCGTC AAGGATTGAA 194 CATTCGAGGA GTGAAAACAA CAACAAGTTG ATCGAGTTTC CAATAATTGA TCTTGATGGC 23540 |||| | | | | | ||| ||| ||||| | | |||| |||||||||| ||||||||| GATTCAACAA TTCACAGCAA CAAGAAGTTC A--G-TTTTC CAATAATTGA TCTTGATGGT 251 ATCAAGGAAG ATCCGATCAA ACAAAAGAAC ATAGTCCAAG AAGTTGGTCA TGCATCCGAG 23600 ||||||||| || ||||||| || ||||||| |||||||| | |||| ||||| ||||||||| ATCAAGGAAA ATTCGATCAA ACGAAAGAAC ATAGTCCAGG AAGTCGGTCA AGCATCCGAG 311 AGTTGGGGTT TCTTTCAAGT GATCAATCAT GGGATTCCTA GTCATGTTAT GGATGCAATG 23660 | |||||| | |||||||||| |||||||||| |||||||||| ||||| || | ||| | |||| ACTTGGGGAT TCTTTCAAGT GATCAATCAT GGGATTCCTA GTCATCTTCT GGAGGAAATG 371 AAAGACGGTG TTACCAGGTT CTTTGAGCAA GATACTGAGG TGAAGAAGCA GTGGTATACG 23720 |||||||||| || ||| || |||||| ||| ||||| |||| |||||| || |||||||||| AAAGACGGTG TTCTCAGTTT CTTTGAACAA GATACCGAGG AGAAGAAACA GTGGTATACG 431 CGAGACTTGA ACAAAGAGTT CACATTTAAC AGCAATTTTG ATCTGTTTAG AGCACCGGTA 23780 ||||| |||| |||| ||| || |||||| |||||||| | | |||||| | |||||| ||| CGAGATTTGA CAAAAGTGTT TACGTTTAAC AGCAATTTCG ACCTGTTTGG AGCACCAGTA 491 ACCAACTGGA GGGACACTTT TCGTGCCACT ATAGCTCCTA TACCTCTAAA ACCCGAACAA 23840 |||||||||| | |||||||| | ||| || | |||||||| |||||| ||| ||| ||| || ACCAACTGGA GAGACACTTT TACTGCTACC ACAGCTCCTA TACCTCCAAA ACCTGAAGAA 551 CTCCCTTCTG TCTGCAGGTA TTATGGAGAA ACAACGTTGT TATAGAGAGG TTTGAATATT 23900 | ||||||| | ||||| TTACCTTCTG TTTGCAG... .......... .......... .......... .......... 568 GTTTTGTGTT TTGATTTGCT TATTGTGCAT TTGTGATAGA GATATTCTCC TCGAGTACAC 23960 ||| |||||| | |||||||| .......... .......... .......... .........G GATGTTCTCC TTGAGTACAC 589 GAACCAAGTG ATGAAATTAG GTGAAACTCT ATTTGAACTA GTGTCCGAGG CTGTTGGCCT 24020 ||||||||| |||||||||| |||| ||||| ||||||| || || | || | || ||||||| AAACCAAGTG ATGAAATTAG GTGATACTCT ATTTGAAATA CTGGCTGAAG CTATTGGCCT 649 CGAACCAAAT CACCTCAAGG ATAT-GGGTT GTGCAGAGGG GCTTCTTGCT TTAGGCCAAT 24079 |||||||||| ||||| ||| | || ||||| |||| ||||| ||| | || |||||||| | CGAACCAAAT -ACCTC-AGG ACATGGGGTT GTGCCGAGGG GCTAATGGCG TTAGGCCATT 707 ATTATCCAGC ATGCCCACAA CCTGAACTTA C 24110 |||||||||| |||||||| | || ||||| | | ATTATCCAGC ATGCCCAC-A CCAGAACTAA C 737 hqPGS_C09HBa0168F14.1-2+_SGN-E344752+ (23361 23857,23940 24110) ******************************************************************************** EST sequence 150 -strand 471 n (File: SGN-E264052-) 1 ACATCAGAAT CATTGGGTAG ATGTTCCTCC TACTCCCGGA GCTCTCGTGG TCAATATAGG 61 AGATATTCTA CAGCTTATAA CGAATGACAA GTTCAAAAGT GTTGATCATA GAGTACTGGC 121 TAATAAGGTC GGTCCAAGGG TATCGTTGGC ATGCTTCTTC ATGACAAACT TTGTGGCAAC 181 ACAAAGGCTG TATGGACCTA TAAAGGAGCT GATATCGGAA CAGAATCCTC CAAACTACAG 241 GGAAACGACG ATTAAGGAGT TCACAACTCA TTTCAATAAC AAAGGGCTGG ATGGCACTTC 301 CACTCTGTTG CATTTTAGAC TTTAGACTAA ATTGTTCAAA TAAGGTTTTG TAATACTATA 361 TATGTCAAAC TAAGTATGCT CATTATGTAA CCATCAATAA ATTCTACTCA TAGTAAGTAA 421 TTTTCATGAT TATGTTTAGA TTAAAAAAAA AAAAAAAAAA AGACTAGTTC T Predicted gene structure (within gDNA segment 23489 to 26690): Exon 1 24189 24261 ( 73 n); cDNA 1 73 ( 73 n); score: 0.932 Intron 1 24262 24342 ( 81 n); Pd: 1.000 (s: 0.94), Pa: 0.973 (s: 1.00) Exon 2 24343 24610 ( 268 n); cDNA 74 340 ( 267 n); score: 0.914 PPA cDNA 443 463 MATCH C09HBa0168F14.1-2+ SGN-E264052- 0.918 341 0.724 C PGS_C09HBa0168F14.1-2+_SGN-E264052- (24189 24261,24343 24610) Alignment (genomic DNA sequence = upper lines): ACATCAGAGC CATTGGGTAG ATGTTCCCCC TACTCCCGGA GCACTCGTGG TCAATATAGG 24248 |||||||| |||||||||| ||||||| || |||||||||| || ||||||| |||||||||| ACATCAGAAT CATTGGGTAG ATGTTCCTCC TACTCCCGGA GCTCTCGTGG TCAATATAGG 60 AGATCTTCTA CAGGCAAGTA GTGTTACATT TTGAGTACTG TTAGAAACAT TATTGTCTTA 24308 |||| ||||| ||| AGATATTCTA CAG....... .......... .......... .......... .......... 73 TAACATATGA GATTGTTGAC TCGATCATTT TCAGCTTATA ACGAATGACA AGTTCAAAAG 24368 |||||| |||||||||| |||||||||| .......... .......... .......... ....CTTATA ACGAATGACA AGTTCAAAAG 99 TGTTGATCAT AGAGTACTGG CTAATAAGGT CGGTCCAAGG GTATCGTTGG CATGCTTCTT 24428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGATCAT AGAGTACTGG CTAATAAGGT CGGTCCAAGG GTATCGTTGG CATGCTTCTT 159 CATGACGAAT TGTATGACAA CACATAGGAT GTATGGACCT ATAAAGGAGC TGATATCGGA 24488 |||||| || | | || ||| |||| ||| | |||||||||| |||||||||| |||||||||| CATGACAAAC TTTGTGGCAA CACAAAGGCT GTATGGACCT ATAAAGGAGC TGATATCGGA 219 ACAGAACCCT CCGAAGTACA GGGAAACAAC GATTAAGGAG TTCACAACTT ATTTCAATAA 24548 |||||| ||| || || |||| ||||||| || |||||||||| ||||||||| |||||||||| ACAGAATCCT CCAAACTACA GGGAAACGAC GATTAAGGAG TTCACAACTC ATTTCAATAA 279 CAAAGGGCTG GATGGCACTT CCACTCTGTT GCATTTTAGA CTCTAAATCA TCGCGATTGT 24608 |||||||||| |||||||||| |||||||||| |||||||||| || || | | | || CAAAGGGCTG GATGGCACTT CCACTCTGTT GCATTTTAGA CTTTAGACTA AATTG-TTCA 338 AA 24610 || AA 340 hqPGS_C09HBa0168F14.1-2+_SGN-E264052- (24189 24261,24343 24610) ******************************************************************************** EST sequence 66 +strand 451 n (File: SGN-E256804+) 1 TTTTTTTTTT GAATAATATC TCACCAATTC AATTAATTTG AAATGGAGGA AGTACTATAA 61 AGACAGCAAA GTTTCCGCCA ACTTCTTGAC GAAAAATGAA GGTGGTGTGA TACCCAATAA 121 CTGGCACAGT TCCTACTACT AGGCAAAAGT AAGAAAAATT ATCTGTGCTA CAATCCCTAT 181 TAAGTGACAT GGAGAAGCCA GTTGTATTCA ATGTGATGTG CAGAGAACAA AAAAAAAAAT 241 CAGCCGAGCA CACAGATTAT TGCTTCAGGC TAAATACTTG AACAAATTCG GGTTCTCTTT 301 GTCTCTTTCC AAGTAATCTC TAGTGATGAG ATCTTCAATT CGCTTTTTGA TTGCTTTGAA 361 GTCAGGCTTA AACATTCGGC TCAACTGCTC AACACACTCC AACACTAATT GTTGATGAGG 421 AAGAACTTTC CCACTCTTCA TAATGCGCAC G Predicted gene structure (within gDNA segment 21082 to 25811): Exon 1 23361 23398 ( 38 n); cDNA 147 183 ( 37 n); score: 0.684 Intron 1 23399 23857 ( 459 n); Pd: 0.000 (s: 0), Pa: 0.651 (s: 0) Exon 2 23858 23889 ( 32 n); cDNA 184 213 ( 30 n); score: 0.656 Intron 2 23890 24676 ( 787 n); Pd: 0.522 (s: 0), Pa: 0.000 (s: 0) Exon 3 24677 24703 ( 27 n); cDNA 214 240 ( 27 n); score: 0.667 Intron 3 24704 24764 ( 61 n); Pd: 0.566 (s: 0), Pa: 0.000 (s: 0.68) Exon 4 24765 24975 ( 211 n); cDNA 241 450 ( 210 n); score: 0.825 PPA cDNA 10 1 MATCH C09HBa0168F14.1-2+ SGN-E256804+ 0.825 308 0.683 C PGS_C09HBa0168F14.1-2+_SGN-E256804+ (23361 23398,23858 23889,24677 24703,24765 24975) Alignment (genomic DNA sequence = upper lines): AAGTATGAAA GAATGGCTGA ACTACAAGCC TTTGATAAGA CGAAAGCCGG TGTTAAGGGA 23420 ||||| |||| | | ||| |||||| || | ||| AAGTAAGAAA AATTATCTGT GCTACAATCC CTA-TTAA.. .......... .......... 183 CTAGTCGATG CAGGTATAAC CAAAGTACCA CGAATGTTTA TACAACCATC GATGATTGAA 23480 .......... .......... .......... .......... .......... .......... 183 CATTCGAGGA GTGAAAACAA CAACAAGTTG ATCGAGTTTC CAATAATTGA TCTTGATGGC 23540 .......... .......... .......... .......... .......... .......... 183 ATCAAGGAAG ATCCGATCAA ACAAAAGAAC ATAGTCCAAG AAGTTGGTCA TGCATCCGAG 23600 .......... .......... .......... .......... .......... .......... 183 AGTTGGGGTT TCTTTCAAGT GATCAATCAT GGGATTCCTA GTCATGTTAT GGATGCAATG 23660 .......... .......... .......... .......... .......... .......... 183 AAAGACGGTG TTACCAGGTT CTTTGAGCAA GATACTGAGG TGAAGAAGCA GTGGTATACG 23720 .......... .......... .......... .......... .......... .......... 183 CGAGACTTGA ACAAAGAGTT CACATTTAAC AGCAATTTTG ATCTGTTTAG AGCACCGGTA 23780 .......... .......... .......... .......... .......... .......... 183 ACCAACTGGA GGGACACTTT TCGTGCCACT ATAGCTCCTA TACCTCTAAA ACCCGAACAA 23840 .......... .......... .......... .......... .......... .......... 183 CTCCCTTCTG TCTGCAGGTA TTATGGAGAA ACAACGTTGT TATAGAGAGG TTTGAATATT 23900 || |||||||| | | |||| ||| | | .......... .......GTG ACATGGAGAA GCCA-GTTG- TATTCAATG. .......... 213 GTTTTGTGTT TTGATTTGCT TATTGTGCAT TTGTGATAGA GATATTCTCC TCGAGTACAC 23960 .......... .......... .......... .......... .......... .......... 213 GAACCAAGTG ATGAAATTAG GTGAAACTCT ATTTGAACTA GTGTCCGAGG CTGTTGGCCT 24020 .......... .......... .......... .......... .......... .......... 213 CGAACCAAAT CACCTCAAGG ATATGGGTTG TGCAGAGGGG CTTCTTGCTT TAGGCCAATA 24080 .......... .......... .......... .......... .......... .......... 213 TTATCCAGCA TGCCCACAAC CTGAACTTAC TCTAGGCACC AGTAAGCATG CTGACAACGA 24140 .......... .......... .......... .......... .......... .......... 213 CTTCCTCACC GTGCTTCTCC AAGACAACAT AGGCGGTCTT CAAGTCTTAC ATCAGAGCCA 24200 .......... .......... .......... .......... .......... .......... 213 TTGGGTAGAT GTTCCCCCTA CTCCCGGAGC ACTCGTGGTC AATATAGGAG ATCTTCTACA 24260 .......... .......... .......... .......... .......... .......... 213 GGCAAGTAGT GTTACATTTT GAGTACTGTT AGAAACATTA TTGTCTTATA ACATATGAGA 24320 .......... .......... .......... .......... .......... .......... 213 TTGTTGACTC GATCATTTTC AGCTTATAAC GAATGACAAG TTCAAAAGTG TTGATCATAG 24380 .......... .......... .......... .......... .......... .......... 213 AGTACTGGCT AATAAGGTCG GTCCAAGGGT ATCGTTGGCA TGCTTCTTCA TGACGAATTG 24440 .......... .......... .......... .......... .......... .......... 213 TATGACAACA CATAGGATGT ATGGACCTAT AAAGGAGCTG ATATCGGAAC AGAACCCTCC 24500 .......... .......... .......... .......... .......... .......... 213 GAAGTACAGG GAAACAACGA TTAAGGAGTT CACAACTTAT TTCAATAACA AAGGGCTGGA 24560 .......... .......... .......... .......... .......... .......... 213 TGGCACTTCC ACTCTGTTGC ATTTTAGACT CTAAATCATC GCGATTGTAA CAGGTAATGC 24620 .......... .......... .......... .......... .......... .......... 213 ATGTGTTGGA ATAGTTGTAA ACATCAATAA AGATACAAGT TGATAACAAT ATGAAGAAAG 24680 | .......... .......... .......... .......... .......... ......TGAT 217 GAGCAGATAA AGACTAAAAA AATGTATTCA TATATGAAAT AAGAAAAACA AATCCTAACT 24740 | ||||| || | ||||| ||| GTGCAGAGAA CAAAAAAAAA AAT....... .......... .......... .......... 240 AGACATAATT AAACAAATAT CAAAAATAAC AAATCCTAAA TTACTGGTTT TAGGCTAAAT 24800 | | | | | ||| | | || ||||||||| .......... .......... ....CAGCCG AGCACACAGA TTA-TTGCTT CAGGCTAAAT 275 ACTTGAACAA ATTTGGGTTC TCTTCATCTC TTTCCAAGTA TTCTCTAGTG ATGAGATCTT 24860 |||||||||| ||| |||||| |||| |||| |||||||||| ||||||||| |||||||||| ACTTGAACAA ATTCGGGTTC TCTTTGTCTC TTTCCAAGTA ATCTCTAGTG ATGAGATCTT 335 CTATCTGCTT TTTGATTGCT TTTAAGTCAG GCTTGAACAT GGAGCTCAAC TGCTCAACAC 24920 | || |||| |||||||||| || ||||||| |||| ||||| ||||||| |||||||||| CAATTCGCTT TTTGATTGCT TTGAAGTCAG GCTTAAACAT TCGGCTCAAC TGCTCAACAC 395 ACTCTGCTAC TAGTTGTTGA TGAGGAAGAA CCTTTCGACT CTTCATAATA CGTAC 24975 |||| || || ||||||| |||||||||| | || | ||| ||||||||| || || ACTCCAACAC TAATTGTTGA TGAGGAAGAA CTTTCCCACT CTTCATAATG CGCAC 450 hqPGS_C09HBa0168F14.1-2+_SGN-E256804+ (24677 24703,24765 24975) ******************************************************************************** EST sequence 75 +strand 607 n (File: SGN-E267205+) 1 TGAAATGGAG GAAGTACTAT AAAGACAGCA AAGTTTCCGC CAACTTCTTG ACGAAAAATG 61 AAGGTGGTGT GATACCCAAT AACTGGCACA GTTCCTACTA CTAGGCAAAA GTAAGAAAAA 121 TTATCTGTGC TACAATCCCT ATTAAGTGAC ATGGAGAAGC CAGTTGTATT CAATGTGATG 181 TGCAGAGAAC AAAAAAAAAA AAATCAGCCG AGCACACAGA TTATTGCTTC AGGCTAAATA 241 CTTGAACAAA TTCGGGTTCT CTTTGTCTCT TTCCAAGTAA TCTCTAGTGA TGAGATCTTC 301 AATTCGCTTT TTGATTGCTT TGAAGTCAGG CTTAAACATT CGGCTCAACT GCTCAACACA 361 CTCCAACACT AGTTGTTGAT GAGGAAGAAC TTTCCGACTC TTCATAATGC GCACGATACA 421 GGCATCAATT GCATAACGTC TATCTTTGTC TACATCCTCG ACTACCTTTT TCCTTTCATC 481 CACAGGAGGT AATGGGACCC TAATCCGCCT CATCCTGTCA GTGAACTTGG AGTTGAACTC 541 AAAATGATCA GAAGAGGAAA CAGTTCTATT GCTAGGTTCC TTGATCAGAA TTTTATACTT 601 GGCACAT Predicted gene structure (within gDNA segment 21442 to 26381): Exon 1 23361 23398 ( 38 n); cDNA 109 145 ( 37 n); score: 0.684 Intron 1 23399 23857 ( 459 n); Pd: 0.000 (s: 0), Pa: 0.651 (s: 0) Exon 2 23858 23889 ( 32 n); cDNA 146 175 ( 30 n); score: 0.656 Intron 2 23890 23939 ( 50 n); Pd: 0.522 (s: 0), Pa: 0.996 (s: 0) Exon 3 23940 23947 ( 8 n); cDNA 176 183 ( 8 n); score: 0.625 Intron 3 23948 24742 ( 795 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.52) Exon 4 24743 25168 ( 426 n); cDNA 184 607 ( 424 n); score: 0.847 MATCH C09HBa0168F14.1-2+ SGN-E267205+ 0.847 504 0.830 C PGS_C09HBa0168F14.1-2+_SGN-E267205+ (23361 23398,23858 23889,23940 23947,24743 25168) Alignment (genomic DNA sequence = upper lines): AAGTATGAAA GAATGGCTGA ACTACAAGCC TTTGATAAGA CGAAAGCCGG TGTTAAGGGA 23420 ||||| |||| | | ||| |||||| || | ||| AAGTAAGAAA AATTATCTGT GCTACAATCC CTA-TTAA.. .......... .......... 145 CTAGTCGATG CAGGTATAAC CAAAGTACCA CGAATGTTTA TACAACCATC GATGATTGAA 23480 .......... .......... .......... .......... .......... .......... 145 CATTCGAGGA GTGAAAACAA CAACAAGTTG ATCGAGTTTC CAATAATTGA TCTTGATGGC 23540 .......... .......... .......... .......... .......... .......... 145 ATCAAGGAAG ATCCGATCAA ACAAAAGAAC ATAGTCCAAG AAGTTGGTCA TGCATCCGAG 23600 .......... .......... .......... .......... .......... .......... 145 AGTTGGGGTT TCTTTCAAGT GATCAATCAT GGGATTCCTA GTCATGTTAT GGATGCAATG 23660 .......... .......... .......... .......... .......... .......... 145 AAAGACGGTG TTACCAGGTT CTTTGAGCAA GATACTGAGG TGAAGAAGCA GTGGTATACG 23720 .......... .......... .......... .......... .......... .......... 145 CGAGACTTGA ACAAAGAGTT CACATTTAAC AGCAATTTTG ATCTGTTTAG AGCACCGGTA 23780 .......... .......... .......... .......... .......... .......... 145 ACCAACTGGA GGGACACTTT TCGTGCCACT ATAGCTCCTA TACCTCTAAA ACCCGAACAA 23840 .......... .......... .......... .......... .......... .......... 145 CTCCCTTCTG TCTGCAGGTA TTATGGAGAA ACAACGTTGT TATAGAGAGG TTTGAATATT 23900 || |||||||| | | |||| ||| | | .......... .......GTG ACATGGAGAA GCCA-GTTG- TATTCAATG. .......... 175 GTTTTGTGTT TTGATTTGCT TATTGTGCAT TTGTGATAGA GATATTCTCC TCGAGTACAC 23960 ||| | | .......... .......... .......... .........T GATGTGC... .......... 183 GAACCAAGTG ATGAAATTAG GTGAAACTCT ATTTGAACTA GTGTCCGAGG CTGTTGGCCT 24020 .......... .......... .......... .......... .......... .......... 183 CGAACCAAAT CACCTCAAGG ATATGGGTTG TGCAGAGGGG CTTCTTGCTT TAGGCCAATA 24080 .......... .......... .......... .......... .......... .......... 183 TTATCCAGCA TGCCCACAAC CTGAACTTAC TCTAGGCACC AGTAAGCATG CTGACAACGA 24140 .......... .......... .......... .......... .......... .......... 183 CTTCCTCACC GTGCTTCTCC AAGACAACAT AGGCGGTCTT CAAGTCTTAC ATCAGAGCCA 24200 .......... .......... .......... .......... .......... .......... 183 TTGGGTAGAT GTTCCCCCTA CTCCCGGAGC ACTCGTGGTC AATATAGGAG ATCTTCTACA 24260 .......... .......... .......... .......... .......... .......... 183 GGCAAGTAGT GTTACATTTT GAGTACTGTT AGAAACATTA TTGTCTTATA ACATATGAGA 24320 .......... .......... .......... .......... .......... .......... 183 TTGTTGACTC GATCATTTTC AGCTTATAAC GAATGACAAG TTCAAAAGTG TTGATCATAG 24380 .......... .......... .......... .......... .......... .......... 183 AGTACTGGCT AATAAGGTCG GTCCAAGGGT ATCGTTGGCA TGCTTCTTCA TGACGAATTG 24440 .......... .......... .......... .......... .......... .......... 183 TATGACAACA CATAGGATGT ATGGACCTAT AAAGGAGCTG ATATCGGAAC AGAACCCTCC 24500 .......... .......... .......... .......... .......... .......... 183 GAAGTACAGG GAAACAACGA TTAAGGAGTT CACAACTTAT TTCAATAACA AAGGGCTGGA 24560 .......... .......... .......... .......... .......... .......... 183 TGGCACTTCC ACTCTGTTGC ATTTTAGACT CTAAATCATC GCGATTGTAA CAGGTAATGC 24620 .......... .......... .......... .......... .......... .......... 183 ATGTGTTGGA ATAGTTGTAA ACATCAATAA AGATACAAGT TGATAACAAT ATGAAGAAAG 24680 .......... .......... .......... .......... .......... .......... 183 GAGCAGATAA AGACTAAAAA AATGTATTCA TATATGAAAT AAGAAAAACA AATCCTAACT 24740 .......... .......... .......... .......... .......... .......... 183 AGACATAATT AAACAAATAT CAAAAATAAC AAATCCTAAA TTACTGGTTT TAGGCTAAAT 24800 | | || ||| ||| | || | | | | | ||| | | || ||||||||| ..AGAGAA-C AAAAAAAAAA AAATCAGCCG AGCACACAGA TTA-TTGCTT CAGGCTAAAT 239 ACTTGAACAA ATTTGGGTTC TCTTCATCTC TTTCCAAGTA TTCTCTAGTG ATGAGATCTT 24860 |||||||||| ||| |||||| |||| |||| |||||||||| ||||||||| |||||||||| ACTTGAACAA ATTCGGGTTC TCTTTGTCTC TTTCCAAGTA ATCTCTAGTG ATGAGATCTT 299 CTATCTGCTT TTTGATTGCT TTTAAGTCAG GCTTGAACAT GGAGCTCAAC TGCTCAACAC 24920 | || |||| |||||||||| || ||||||| |||| ||||| ||||||| |||||||||| CAATTCGCTT TTTGATTGCT TTGAAGTCAG GCTTAAACAT TCGGCTCAAC TGCTCAACAC 359 ACTCTGCTAC TAGTTGTTGA TGAGGAAGAA CCTTTCGACT CTTCATAATA CGTACTATAC 24980 |||| || |||||||||| |||||||||| | || ||||| ||||||||| || || |||| ACTCCAACAC TAGTTGTTGA TGAGGAAGAA CTTTCCGACT CTTCATAATG CGCACGATAC 419 ATGCATCGAT TGCATAACGT CTATCTTTGC CTACATCCTC CACCACCTTT TTCCTTTCAT 25040 | ||||| || |||||||||| ||||||||| |||||||||| || |||||| |||||||||| AGGCATCAAT TGCATAACGT CTATCTTTGT CTACATCCTC GACTACCTTT TTCCTTTCAT 479 CCACAAGAGG TAACGGTACC CTAACCCGTC TCATCCTGTC AGTGAACTTG GAGTTGAACT 25100 ||||| |||| ||| || ||| |||| ||| | |||||||||| |||||||||| |||||||||| CCACAGGAGG TAATGGGACC CTAATCCGCC TCATCCTGTC AGTGAACTTG GAGTTGAACT 539 CGAAATGATC AGATGATGTA ACAGTTGCAT TGCTAGGATC TTTAATCAGA ATTTTATACT 25160 | |||||||| ||| || | | |||||| || ||||||| || || |||||| |||||||||| CAAAATGATC AGAAGAGGAA ACAGTTCTAT TGCTAGGTTC CTTGATCAGA ATTTTATACT 599 TAGCACAT 25168 | |||||| TGGCACAT 607 hqPGS_C09HBa0168F14.1-2+_SGN-E267205+ (24743 25168) ******************************************************************************** EST sequence 248 -strand 592 n (File: SGN-E241804-) 1 TCCCTATTAA GTGACATGGA GAAGCCAGTT GTATTCAATG TGATGTGCAG AGAACAAAAA 61 AAANAATCAG CCGAGCACAC AGATTATTGC TTCAGGCTAA ATACTTGAAC AAATTCGGGT 121 TCTCTTTGTC TCTTTCCAAG TAATCTCTAG TGATGAGATC TTCAATTCGC TTTTTGATTG 181 CTTTGAAGTC AGGCTTAAAC ATTCGGCTCA ACTGCTCAAC ACACTCCAAC ACTAGTTGTT 241 GATGAGGAAG AACTTTCCGA CTCTTCATAA TGCGCACGAT ACAGGCATCA ATTGCATAAC 301 GTCTATCTTT GTCTACATCC TCGACTACCT TTTTCCTTTC ATCCACAGGA GGTAATGGGA 361 CCCTAATCCG CCTCATCCTG TCAGTGAACT TGGAGTTGAA CTCAAAATGA TCAGAAGAAG 421 AAACAGTTCT ATTGCTAGGT TCCTTGATCA GAATTTTATA CTTGGCACAT GAAAGGGACT 481 GAAGCAATCT GATCAAGTCA TCATCAGCCA AATTTAACTG ACTCTTGATT TCTGAGTAAC 541 TCAATCTATC TGAAGAATTA AACAATAACA AAACAGCAGC CTGATAAGTT CC Predicted gene structure (within gDNA segment 22802 to 26646): Exon 1 24789 25290 ( 502 n); cDNA 91 592 ( 502 n); score: 0.898 MATCH C09HBa0168F14.1-2+ SGN-E241804- 0.898 502 0.848 C PGS_C09HBa0168F14.1-2+_SGN-E241804- (24789 25290) Alignment (genomic DNA sequence = upper lines): TTTAGGCTAA ATACTTGAAC AAATTTGGGT TCTCTTCATC TCTTTCCAAG TATTCTCTAG 24848 || ||||||| |||||||||| ||||| |||| |||||| || |||||||||| || ||||||| TTCAGGCTAA ATACTTGAAC AAATTCGGGT TCTCTTTGTC TCTTTCCAAG TAATCTCTAG 150 TGATGAGATC TTCTATCTGC TTTTTGATTG CTTTTAAGTC AGGCTTGAAC ATGGAGCTCA 24908 |||||||||| ||| || || |||||||||| |||| ||||| |||||| ||| || ||||| TGATGAGATC TTCAATTCGC TTTTTGATTG CTTTGAAGTC AGGCTTAAAC ATTCGGCTCA 210 ACTGCTCAAC ACACTCTGCT ACTAGTTGTT GATGAGGAAG AACCTTTCGA CTCTTCATAA 24968 |||||||||| |||||| |||||||||| |||||||||| ||| || ||| |||||||||| ACTGCTCAAC ACACTCCAAC ACTAGTTGTT GATGAGGAAG AACTTTCCGA CTCTTCATAA 270 TACGTACTAT ACATGCATCG ATTGCATAAC GTCTATCTTT GCCTACATCC TCCACCACCT 25028 | || || || ||| ||||| |||||||||| |||||||||| | |||||||| || || |||| TGCGCACGAT ACAGGCATCA ATTGCATAAC GTCTATCTTT GTCTACATCC TCGACTACCT 330 TTTTCCTTTC ATCCACAAGA GGTAACGGTA CCCTAACCCG TCTCATCCTG TCAGTGAACT 25088 |||||||||| ||||||| || ||||| || | |||||| ||| ||||||||| |||||||||| TTTTCCTTTC ATCCACAGGA GGTAATGGGA CCCTAATCCG CCTCATCCTG TCAGTGAACT 390 TGGAGTTGAA CTCGAAATGA TCAGATGATG TAACAGTTGC ATTGCTAGGA TCTTTAATCA 25148 |||||||||| ||| |||||| ||||| || | ||||||| ||||||||| || || |||| TGGAGTTGAA CTCAAAATGA TCAGAAGAAG AAACAGTTCT ATTGCTAGGT TCCTTGATCA 450 GAATTTTATA CTTAGCACAT GAAAGAGATT GAAGCAATCT GATCAAGTCA TCATCAGCTA 25208 |||||||||| ||| |||||| ||||| || | |||||||||| |||||||||| |||||||| | GAATTTTATA CTTGGCACAT GAAAGGGACT GAAGCAATCT GATCAAGTCA TCATCAGCCA 510 AATTTAACTG ACTTTTGATT TCCGAGTAAC TCAATCTATC TGACGAATTA AACAATGACA 25268 |||||||||| ||| |||||| || ||||||| |||||||||| ||| |||||| |||||| ||| AATTTAACTG ACTCTTGATT TCTGAGTAAC TCAATCTATC TGAAGAATTA AACAATAACA 570 GAACAGCAGC CTGATAGGTT CC 25290 ||||||||| |||||| ||| || AAACAGCAGC CTGATAAGTT CC 592 hqPGS_C09HBa0168F14.1-2+_SGN-E241804- (24789 25290) ******************************************************************************** EST sequence 173 -strand 802 n (File: SGN-E554480-) 1 GTAGTCACGA GTGATAAGAT CTTCAATCCT CTTTTTGATT GCTTTGAAAT CAGGCTTAAA 61 CATGCGGCTC AATTGCTCAA CACACTCCAA CACGAGCTGC TGATGAGGAA GCACCTTCCG 121 GCTCTTCATA ATGCGCACAA TACAAGCATC AATTGCATAA CGTCTGTCCT TGTCAACGTC 181 CTCAACCACT TTTTTCCTTT CATCAACCGG AGGCAAAGGG ATCCTAATCC TCCTCATTCT 241 GTCAGTGAAC TTGGAGTTGA ATTCAAAATG ATCCGTTGAC GAAACAGTTC TATTGCTAGG 301 CTCTTTGGTC AGAATTTTAT ACTTAGCACA TGACAGGGAT TGAAGCAATC TGATCAAGTC 361 ATCATCAGCC AAATTTAACT GACTTTTGAT ATCTGAGTAA CTCAATCTAT CTGAAGCATT 421 AAACAGTAAT AGAGCAGCAG CCTGGTAAGT TCCCACAATA AGTTCAATAG TTTTTGATTC 481 AAACTTGCCA TTGATATTGC ATGTACCCAG TGAATAAATC CAGGTCAATT TCCTGTGTTT 541 CGTTTTCGTC TGATAAAATT CCTTGAAGAC TTCTACACAC TTCACCATTT TCACAGGGAG 601 ACTCAGATCA GAAGATTTAT AACTAGGCCA AAAGCCAGTT GTAAGAACTG TGACAGTCAA 661 ATCAATTCCG GGATTAGCTG CCGAGTTGTT ACTGAGATAT TCCTGAAAGT GACTCTGATT 721 TTCCTTCGCC AGAGTCAAGT CCGTCACCAT TCCCTCCATC TTTGACGTAA ACTGTCCACC 781 ACACTGCTGC TTTAACTTTG TT Predicted gene structure (within gDNA segment 21195 to 26404): Exon 1 24838 25633 ( 796 n); cDNA 1 802 ( 802 n); score: 0.827 MATCH C09HBa0168F14.1-2+ SGN-E554480- 0.827 796 0.993 C PGS_C09HBa0168F14.1-2+_SGN-E554480- (24838 25633) Alignment (genomic DNA sequence = upper lines): GTATTCTCTA GTGATGAGAT CTTCTATCTG CTTTTTGATT GCTTTTAAGT CAGGCTTGAA 24897 ||| || | | ||||| |||| |||| ||| |||||||||| ||||| || | ||||||| || GTAGTCACGA GTGATAAGAT CTTCAATCCT CTTTTTGATT GCTTTGAAAT CAGGCTTAAA 60 CATGGAGCTC AACTGCTCAA CACACTCTGC TACTAGTTGT TGATGAGGAA GAACCTTTCG 24957 |||| |||| || ||||||| ||||||| || || || |||||||||| | ||||| || CATGCGGCTC AATTGCTCAA CACACTCCAA CACGAGCTGC TGATGAGGAA GCACCTTCCG 120 ACTCTTCATA ATACGTACTA TACATGCATC GATTGCATAA CGTCTATCTT TGCCTACATC 25017 ||||||||| || || || | |||| ||||| ||||||||| ||||| || | || | || || GCTCTTCATA ATGCGCACAA TACAAGCATC AATTGCATAA CGTCTGTCCT TGTCAACGTC 180 CTCCACCACC TTTTTCCTTT CATCCACAAG AGGTAACGGT ACCCTAACCC GTCTCATCCT 25077 ||| ||||| |||||||||| |||| || | ||| || || | ||||| || ||||| || CTCAACCACT TTTTTCCTTT CATCAACCGG AGGCAAAGGG ATCCTAATCC TCCTCATTCT 240 GTCAGTGAAC TTGGAGTTGA ACTCGAAATG ATCAGATGAT GTAACAGTTG CATTGCTAGG 25137 |||||||||| |||||||||| | || ||||| ||| | ||| | ||||||| ||||||||| GTCAGTGAAC TTGGAGTTGA ATTCAAAATG ATCCGTTGAC GAAACAGTTC TATTGCTAGG 300 ATCTTTAATC AGAATTTTAT ACTTAGCACA TGAAAGAGAT TGAAGCAATC TGATCAAGTC 25197 ||||| || |||||||||| |||||||||| ||| || ||| |||||||||| |||||||||| CTCTTTGGTC AGAATTTTAT ACTTAGCACA TGACAGGGAT TGAAGCAATC TGATCAAGTC 360 ATCATCAGCT AAATTTAACT GACTTTTGAT TTCCGAGTAA CTCAATCTAT CTGACGAATT 25257 ||||||||| |||||||||| |||||||||| || |||||| |||||||||| |||| | ||| ATCATCAGCC AAATTTAACT GACTTTTGAT ATCTGAGTAA CTCAATCTAT CTGAAGCATT 420 AAACAATGAC AGAACAGCAG CCTGATAGGT TCCCAGAATC AATTCAATGG TTTTTGAATC 25317 ||||| | | ||| |||||| |||| || || ||||| ||| | |||||| | ||||||| || AAACAGTAAT AGAGCAGCAG CCTGGTAAGT TCCCACAATA AGTTCAATAG TTTTTGATTC 480 AAACTTCCCA ATGACGTTAC ACGTACCCAA TGAATAAATC CATGTCAGTT TCCTGTGTTT 25377 |||||| ||| ||| || | | ||||||| |||||||||| || |||| || |||||||||| AAACTTGCCA TTGATATTGC ATGTACCCAG TGAATAAATC CAGGTCAATT TCCTGTGTTT 540 CGTTGTTGTC TGATAGAATT CGTTGAAGAC TTGTACACAC TTAGCCATCT CGACAGGTAG 25437 |||| | ||| ||||| |||| | |||||||| || ||||||| || |||| | ||||| || CGTTTTCGTC TGATAAAATT CCTTGAAGAC TTCTACACAC TTCACCATTT TCACAGGGAG 600 ACTCAAATCA CAAGATTTAT AGCTAGGCCA GAACCCACTT GTAAGTACTG TGACAGTTAG 25497 ||||| |||| ||||||||| | |||||||| || ||| || ||||| |||| ||||||| | ACTCAGATCA GAAGATTTAT AACTAGGCCA AAAGCCAGTT GTAAGAACTG TGACAGTCAA 660 ATCAATTCC- --AGTA-CT- -CGCGTTGTT GCTGAGATAT TCTTGAAAAT CGTTCTGATT 25551 ||||||||| | || || || |||||| ||||||||| || ||||| | ||||||| ATCAATTCCG GGATTAGCTG CCGAGTTGTT ACTGAGATAT TCCTGAAAGT GACTCTGATT 720 TTCCTTAGCT AACGTCAAGT CTGTTACCAT TCCCTCCATC TTTGATGTAA ACTGTCCACC 25611 |||||| || | ||||||| | || ||||| |||||||||| ||||| |||| |||||||||| TTCCTTCGCC AGAGTCAAGT CCGTCACCAT TCCCTCCATC TTTGACGTAA ACTGTCCACC 780 ACAATACTGC TTTAGCTTCG TT 25633 ||| | |||| |||| ||| | || ACACTGCTGC TTTAACTTTG TT 802 hqPGS_C09HBa0168F14.1-2+_SGN-E554480- (24838 25633) ******************************************************************************** EST sequence 191 -strand 564 n (File: SGN-E256254-) 1 CATAATGCGC ACGATACAGG CATCAATTGC ATAACGTCTA TCTTTGTCTA CATCCTCGAC 61 TACCTTTTTC CTTTCATCCA CAGGAGGTAA TGGGACCCTA ATCCGCCTCA TCCTGTCAGT 121 GAACTTGGAG TTGAACTCAA AATGATCAGA AGAAGAAACA GTTCTATTGC TAGGTTCCTT 181 GATCAGAATT TTATACTTGG CACATGAAAG GGACTGAAGC AATCTGATCA AGTCATCATC 241 AGCCAAATTT AACTGACTCT TGATTTCTGA GTAACTCAAT CTATCTGAAG AATTAAACAA 301 TAACAAAACA GCAGCCTGAT AAGTTCCCAG AATCAGTTCA ATGGTTTTTG AATCAAACTT 361 CCCGTTGATG TTACACGTAC CCAATGAATA AATCCATGTC AATTTCCTGT GTTTCGTTTT 421 TGTCTGATAG AATTCCTTGA AGACTTCTAC ACACTTCACC ATTTCCACAG GGAGACACAA 481 ATCAGAAGAT TTATAACTAG GCCAGAACCC AGTTGTAAGA ACTGTGACAG TTAAATCAAT 541 TCCAGGACTT GCGGCAGGGT TGTT Predicted gene structure (within gDNA segment 24129 to 27288): Exon 1 24964 25525 ( 562 n); cDNA 1 562 ( 562 n); score: 0.895 MATCH C09HBa0168F14.1-2+ SGN-E256254- 0.895 562 0.996 C PGS_C09HBa0168F14.1-2+_SGN-E256254- (24964 25525) Alignment (genomic DNA sequence = upper lines): CATAATACGT ACTATACATG CATCGATTGC ATAACGTCTA TCTTTGCCTA CATCCTCCAC 25023 |||||| || || ||||| | |||| ||||| |||||||||| |||||| ||| ||||||| || CATAATGCGC ACGATACAGG CATCAATTGC ATAACGTCTA TCTTTGTCTA CATCCTCGAC 60 CACCTTTTTC CTTTCATCCA CAAGAGGTAA CGGTACCCTA ACCCGTCTCA TCCTGTCAGT 25083 ||||||||| |||||||||| || ||||||| || |||||| | ||| |||| |||||||||| TACCTTTTTC CTTTCATCCA CAGGAGGTAA TGGGACCCTA ATCCGCCTCA TCCTGTCAGT 120 GAACTTGGAG TTGAACTCGA AATGATCAGA TGATGTAACA GTTGCATTGC TAGGATCTTT 25143 |||||||||| |||||||| | |||||||||| || | |||| ||| ||||| |||| || || GAACTTGGAG TTGAACTCAA AATGATCAGA AGAAGAAACA GTTCTATTGC TAGGTTCCTT 180 AATCAGAATT TTATACTTAG CACATGAAAG AGATTGAAGC AATCTGATCA AGTCATCATC 25203 ||||||||| |||||||| | |||||||||| || |||||| |||||||||| |||||||||| GATCAGAATT TTATACTTGG CACATGAAAG GGACTGAAGC AATCTGATCA AGTCATCATC 240 AGCTAAATTT AACTGACTTT TGATTTCCGA GTAACTCAAT CTATCTGACG AATTAAACAA 25263 ||| |||||| |||||||| | ||||||| || |||||||||| |||||||| | |||||||||| AGCCAAATTT AACTGACTCT TGATTTCTGA GTAACTCAAT CTATCTGAAG AATTAAACAA 300 TGACAGAACA GCAGCCTGAT AGGTTCCCAG AATCAATTCA ATGGTTTTTG AATCAAACTT 25323 | ||| |||| |||||||||| | |||||||| ||||| |||| |||||||||| |||||||||| TAACAAAACA GCAGCCTGAT AAGTTCCCAG AATCAGTTCA ATGGTTTTTG AATCAAACTT 360 CCCAATGACG TTACACGTAC CCAATGAATA AATCCATGTC AGTTTCCTGT GTTTCGTTGT 25383 ||| ||| | |||||||||| |||||||||| |||||||||| | |||||||| |||||||| | CCCGTTGATG TTACACGTAC CCAATGAATA AATCCATGTC AATTTCCTGT GTTTCGTTTT 420 TGTCTGATAG AATTCGTTGA AGACTTGTAC ACACTTAGCC ATCTCGACAG GTAGACTCAA 25443 |||||||||| ||||| |||| |||||| ||| |||||| || || || |||| | |||| ||| TGTCTGATAG AATTCCTTGA AGACTTCTAC ACACTTCACC ATTTCCACAG GGAGACACAA 480 ATCACAAGAT TTATAGCTAG GCCAGAACCC ACTTGTAAGT ACTGTGACAG TTAGATCAAT 25503 |||| ||||| ||||| |||| |||||||||| | ||||||| |||||||||| ||| |||||| ATCAGAAGAT TTATAACTAG GCCAGAACCC AGTTGTAAGA ACTGTGACAG TTAAATCAAT 540 TCCAGTACTC GCGTTGTTGC TG 25525 ||||| ||| ||| | || TCCAGGACTT GCGGCAGGGT TG 562 hqPGS_C09HBa0168F14.1-2+_SGN-E256254- (24964 25525) ******************************************************************************** EST sequence 217 -strand 594 n (File: SGN-E245623-) 1 ATACAAGCAT CAATTGCATA ACGTCTGTCC TTGTCAACGT CCTCAACCAC TTTTTTCCTT 61 TCATCAACCG GAGGCAAAGG GATCCTAATC CTCCTCATTC TGTCAGTGAA CTTGGAGTTG 121 AATTCAAAAT GATCCGTTGA CGAAACAGTT CTATTGCTAG GCTCTTTGGT CAGAATTTTA 181 TACTTAGCAC ATGACAGGGA TTGAAGCAAT CTGATCAAGT CATCATCAGC CAAATTTAAC 241 TGACTTTTGA TATCTGAGTA ACTCAATCTA TCTGAAGCAT TAAACAGTAA TAGAGCAGCA 301 GCCTGGTAAG TTCCCACAAT AAGTTCAATA GTTTTTGATT CAAACTTGCC ATTGATATTG 361 CATGTACCCA GTGAATAAAT CCAGGTCAAT TTCCTGTGTT TCGTTTTCGT CTGATAAAAT 421 TCCTTGAAGA CTTCTACACA CTTCACCATT TCCACAGGGA GACTCAGATC AGAAGATTTA 481 TAACTAGGCC AAAAGCCAGT TGTAAGAACT GTGACAGTCA AATCAATTCC GGGATTAGCT 541 GCCGAGTTGT TACTGAGATA TTCTTGAAAG TGACTCTGAT TTTCCTTCGC CAGA Predicted gene structure (within gDNA segment 22585 to 29257): Exon 1 24977 25506 ( 530 n); cDNA 1 530 ( 530 n); score: 0.855 MATCH C09HBa0168F14.1-2+ SGN-E245623- 0.855 530 0.892 C PGS_C09HBa0168F14.1-2+_SGN-E245623- (24977 25506) Alignment (genomic DNA sequence = upper lines): ATACATGCAT CGATTGCATA ACGTCTATCT TTGCCTACAT CCTCCACCAC CTTTTTCCTT 25036 ||||| |||| | |||||||| |||||| || ||| | || | |||| ||||| ||||||||| ATACAAGCAT CAATTGCATA ACGTCTGTCC TTGTCAACGT CCTCAACCAC TTTTTTCCTT 60 TCATCCACAA GAGGTAACGG TACCCTAACC CGTCTCATCC TGTCAGTGAA CTTGGAGTTG 25096 ||||| || |||| || || | ||||| | | ||||| | |||||||||| |||||||||| TCATCAACCG GAGGCAAAGG GATCCTAATC CTCCTCATTC TGTCAGTGAA CTTGGAGTTG 120 AACTCGAAAT GATCAGATGA TGTAACAGTT GCATTGCTAG GATCTTTAAT CAGAATTTTA 25156 || || |||| |||| | ||| | ||||||| |||||||| | ||||| | |||||||||| AATTCAAAAT GATCCGTTGA CGAAACAGTT CTATTGCTAG GCTCTTTGGT CAGAATTTTA 180 TACTTAGCAC ATGAAAGAGA TTGAAGCAAT CTGATCAAGT CATCATCAGC TAAATTTAAC 25216 |||||||||| |||| || || |||||||||| |||||||||| |||||||||| ||||||||| TACTTAGCAC ATGACAGGGA TTGAAGCAAT CTGATCAAGT CATCATCAGC CAAATTTAAC 240 TGACTTTTGA TTTCCGAGTA ACTCAATCTA TCTGACGAAT TAAACAATGA CAGAACAGCA 25276 |||||||||| | || ||||| |||||||||| ||||| | || |||||| | | ||| ||||| TGACTTTTGA TATCTGAGTA ACTCAATCTA TCTGAAGCAT TAAACAGTAA TAGAGCAGCA 300 GCCTGATAGG TTCCCAGAAT CAATTCAATG GTTTTTGAAT CAAACTTCCC AATGACGTTA 25336 ||||| || | |||||| ||| | |||||| |||||||| | ||||||| || | ||| || GCCTGGTAAG TTCCCACAAT AAGTTCAATA GTTTTTGATT CAAACTTGCC ATTGATATTG 360 CACGTACCCA ATGAATAAAT CCATGTCAGT TTCCTGTGTT TCGTTGTTGT CTGATAGAAT 25396 || ||||||| ||||||||| ||| |||| | |||||||||| ||||| | || |||||| ||| CATGTACCCA GTGAATAAAT CCAGGTCAAT TTCCTGTGTT TCGTTTTCGT CTGATAAAAT 420 TCGTTGAAGA CTTGTACACA CTTAGCCATC TCGACAGGTA GACTCAAATC ACAAGATTTA 25456 || ||||||| ||| |||||| ||| |||| || ||||| | |||||| ||| | |||||||| TCCTTGAAGA CTTCTACACA CTTCACCATT TCCACAGGGA GACTCAGATC AGAAGATTTA 480 TAGCTAGGCC AGAACCCACT TGTAAGTACT GTGACAGTTA GATCAATTCC 25506 || ||||||| | || ||| | |||||| ||| |||||||| | ||||||||| TAACTAGGCC AAAAGCCAGT TGTAAGAACT GTGACAGTCA AATCAATTCC 530 hqPGS_C09HBa0168F14.1-2+_SGN-E245623- (24977 25506) ******************************************************************************** EST sequence 203 -strand 316 n (File: SGN-E235645-) 1 CGATACAGGC ATCAATTGCA TAACGTCTAT CTTTGTCTAC ATCCTCGACT ACCTTTTTCC 61 TTTCATCCAC AGCAGGTAAT GGGACCCTAA TCCGCCTCAT CCTGTCAGTG AACTTGGAGT 121 TGAACTCAAA ATGATCAGAA GAAGAAACAG TTCTATTGCT AGGTTCCTTG ATCAGAATTT 181 TATACTTGGC ACATGAAAGG GACTGAAGCA ATCTGATCAA GTCATCATCA GCCAAATTTA 241 ACTGACTCTT GATTTCTGAG TAACTCAATC TATCTGAAGA ATTAAACAAT AACAAAACAG 301 CAGCCTGATA AGTTCC Predicted gene structure (within gDNA segment 24239 to 26646): Exon 1 24977 25290 ( 314 n); cDNA 3 316 ( 314 n); score: 0.904 MATCH C09HBa0168F14.1-2+ SGN-E235645- 0.904 314 0.994 C PGS_C09HBa0168F14.1-2+_SGN-E235645- (24977 25290) Alignment (genomic DNA sequence = upper lines): ATACATGCAT CGATTGCATA ACGTCTATCT TTGCCTACAT CCTCCACCAC CTTTTTCCTT 25036 ||||| |||| | |||||||| |||||||||| ||| |||||| |||| || || |||||||||| ATACAGGCAT CAATTGCATA ACGTCTATCT TTGTCTACAT CCTCGACTAC CTTTTTCCTT 62 TCATCCACAA GAGGTAACGG TACCCTAACC CGTCTCATCC TGTCAGTGAA CTTGGAGTTG 25096 ||||||||| |||||| || ||||||| | || ||||||| |||||||||| |||||||||| TCATCCACAG CAGGTAATGG GACCCTAATC CGCCTCATCC TGTCAGTGAA CTTGGAGTTG 122 AACTCGAAAT GATCAGATGA TGTAACAGTT GCATTGCTAG GATCTTTAAT CAGAATTTTA 25156 ||||| |||| ||||||| || | ||||||| |||||||| | || || || |||||||||| AACTCAAAAT GATCAGAAGA AGAAACAGTT CTATTGCTAG GTTCCTTGAT CAGAATTTTA 182 TACTTAGCAC ATGAAAGAGA TTGAAGCAAT CTGATCAAGT CATCATCAGC TAAATTTAAC 25216 ||||| |||| ||||||| || ||||||||| |||||||||| |||||||||| ||||||||| TACTTGGCAC ATGAAAGGGA CTGAAGCAAT CTGATCAAGT CATCATCAGC CAAATTTAAC 242 TGACTTTTGA TTTCCGAGTA ACTCAATCTA TCTGACGAAT TAAACAATGA CAGAACAGCA 25276 ||||| |||| |||| ||||| |||||||||| ||||| |||| |||||||| | || ||||||| TGACTCTTGA TTTCTGAGTA ACTCAATCTA TCTGAAGAAT TAAACAATAA CAAAACAGCA 302 GCCTGATAGG TTCC 25290 |||||||| | |||| GCCTGATAAG TTCC 316 hqPGS_C09HBa0168F14.1-2+_SGN-E235645- (24977 25290) ******************************************************************************** EST sequence 225 -strand 660 n (File: SGN-E321560-) 1 AGGCATCAAT TGCATAACGT CTATCTTTGT CTACATCTTC GACTACTTTT TCCTTTCATC 61 CACAGGAGGT AATGGGACCC TAATCCGCCT CATCCTGTCA GTGAACTTGG AGTTGAACTC 121 AAAATGATCA GAAGAAGAAA CAGTTCTATT GCTAGGTTCC TTGATCAGAA TTTTATACTT 181 GGCACATGAA AGGGACTGAA GCAATCTGAT CAAGTCATCA TCAGCCAAAT TTAACTGACT 241 CTTGATTTCT GAGTAACTCA ATCTATCTGA AGAATTAAAC AATAACAAAA CAGCAGCCTG 301 ATAAGTTCCC AGAATCAGTT CAATGGTTTT TGAATCAAAC TTCCCGTTGA TGTTACACGT 361 ACCCAATGAA TAAATCCATG TCAATTTCCT GTGTTTCGTT TTTGTCTGAT AGAATTCCTT 421 GAAGACTTCT ACACACTTCA CCATTTCCAC AGGGAGACAC AAATCAGAAG ATTTATAACT 481 AGGCCAGAAC CCAGTTGTAA GAACTGTGAC AGTTAAATCA ATTCCAGGAC TTGCGGCAGG 541 GTTGTTGCTG AGATATTCTT GAAAATGGTT TTGATTTTCC CTAGCCAAAG TCAAGTCTGT 601 CACCATCCCC TCCATCTTTG ATGTGAACTG CCCACCACAC TGTTGCTTTA GCTTTGTTAA Predicted gene structure (within gDNA segment 24299 to 28428): Exon 1 24983 25635 ( 653 n); cDNA 3 660 ( 658 n); score: 0.881 MATCH C09HBa0168F14.1-2+ SGN-E321560- 0.881 653 0.989 C PGS_C09HBa0168F14.1-2+_SGN-E321560- (24983 25635) Alignment (genomic DNA sequence = upper lines): GCATCGATTG CATAACGTCT ATCTTTGCCT ACATCCTCCA CCACCTTTTT CCTTTCATCC 25042 ||||| |||| |||||||||| ||||||| || ||||| || | | | |||||| |||||||||| GCATCAATTG CATAACGTCT ATCTTTGTCT ACATCTTCGA CTA-CTTTTT CCTTTCATCC 61 ACAAGAGGTA ACGGTACCCT AACCCGTCTC ATCCTGTCAG TGAACTTGGA GTTGAACTCG 25102 ||| |||||| | || ||||| || ||| ||| |||||||||| |||||||||| ||||||||| ACAGGAGGTA ATGGGACCCT AATCCGCCTC ATCCTGTCAG TGAACTTGGA GTTGAACTCA 121 AAATGATCAG ATGATGTAAC AGTTGCATTG CTAGGATCTT TAATCAGAAT TTTATACTTA 25162 |||||||||| | || | ||| |||| |||| ||||| || | | |||||||| ||||||||| AAATGATCAG AAGAAGAAAC AGTTCTATTG CTAGGTTCCT TGATCAGAAT TTTATACTTG 181 GCACATGAAA GAGATTGAAG CAATCTGATC AAGTCATCAT CAGCTAAATT TAACTGACTT 25222 |||||||||| | || ||||| |||||||||| |||||||||| |||| ||||| ||||||||| GCACATGAAA GGGACTGAAG CAATCTGATC AAGTCATCAT CAGCCAAATT TAACTGACTC 241 TTGATTTCCG AGTAACTCAA TCTATCTGAC GAATTAAACA ATGACAGAAC AGCAGCCTGA 25282 |||||||| | |||||||||| ||||||||| |||||||||| || ||| ||| |||||||||| TTGATTTCTG AGTAACTCAA TCTATCTGAA GAATTAAACA ATAACAAAAC AGCAGCCTGA 301 TAGGTTCCCA GAATCAATTC AATGGTTTTT GAATCAAACT TCCCAATGAC GTTACACGTA 25342 || ||||||| |||||| ||| |||||||||| |||||||||| |||| ||| |||||||||| TAAGTTCCCA GAATCAGTTC AATGGTTTTT GAATCAAACT TCCCGTTGAT GTTACACGTA 361 CCCAATGAAT AAATCCATGT CAGTTTCCTG TGTTTCGTTG TTGTCTGATA GAATTCGTTG 25402 |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| |||||| ||| CCCAATGAAT AAATCCATGT CAATTTCCTG TGTTTCGTTT TTGTCTGATA GAATTCCTTG 421 AAGACTTGTA CACACTTAGC CATCTCGACA GGTAGACTCA AATCACAAGA TTTATAGCTA 25462 ||||||| || ||||||| | ||| || ||| || |||| || ||||| |||| |||||| ||| AAGACTTCTA CACACTTCAC CATTTCCACA GGGAGACACA AATCAGAAGA TTTATAACTA 481 GGCCAGAACC CACTTGTAAG TACTGTGACA GTTAGATCAA TTCCAGTAC- T-C-GC---G 25516 |||||||||| || ||||||| ||||||||| |||| ||||| |||||| || | | || | GGCCAGAACC CAGTTGTAAG AACTGTGACA GTTAAATCAA TTCCAGGACT TGCGGCAGGG 541 TTGTTGCTGA GATATTCTTG AAAATCGTTC TGATTTTCCT TAGCTAACGT CAAGTCTGTT 25576 |||||||||| |||||||||| ||||| ||| ||||||||| |||| || || ||||||||| TTGTTGCTGA GATATTCTTG AAAATGGTTT TGATTTTCCC TAGCCAAAGT CAAGTCTGTC 601 ACCATTCCCT CCATCTTTGA TGTAAACTGT CCACCACAAT ACTGCTTTAG CTTCGTTAA 25635 ||||| |||| |||||||||| ||| ||||| |||||||| | |||||||| ||| ||||| ACCATCCCCT CCATCTTTGA TGTGAACTGC CCACCACACT GTTGCTTTAG CTTTGTTAA 660 hqPGS_C09HBa0168F14.1-2+_SGN-E321560- (24983 25635) ******************************************************************************** EST sequence 238 -strand 481 n (File: SGN-E201552-) 1 ATTGAAGCAA TCTGATCAAG TCATCATCAG CCAAATTTAA CTGACTTTTG ATATCTGAGT 61 AACTCAATCT ATCTGAAGCA TTAAACAGTA ATAGAGCAGC AGCCTGGTAA GTTCCCACAA 121 TAAGTTCAAT AGTTTTTGAT TCAAACTTGC CATTGATATT GCATGTACCC AGTGAATAAA 181 TCCAGGTCAA TTTCCTGTGT TTCGTTTTCG TCTGATAAAA TTCCTTGAAG ACTTCTACAC 241 ACTTCACCAT TTCCACAGGG AGACTCAGAT CAGAAGATTT ATAACTAGGC CAAAAGCCAG 301 TTGTAAGAAC TGTGACAGTC AAATCAATTC CGGGATTAGC TGCCGAGTTG TTACTGAGAT 361 ATTCCTGAAA GTGACTCTGA TTTTCCTTCG CCAGAGTCAA GTCCGTCACC ATTCCCTCCA 421 TCTTTGACGT AAACTGTCCA CCACACTGCT GCTTTAACTT TGTTAAGATA AGCCTTTCAT 481 G Predicted gene structure (within gDNA segment 24566 to 26574): Exon 1 25176 25650 ( 475 n); cDNA 1 481 ( 481 n); score: 0.832 MATCH C09HBa0168F14.1-2+ SGN-E201552- 0.832 475 0.988 C PGS_C09HBa0168F14.1-2+_SGN-E201552- (25176 25650) Alignment (genomic DNA sequence = upper lines): ATTGAAGCAA TCTGATCAAG TCATCATCAG CTAAATTTAA CTGACTTTTG ATTTCCGAGT 25235 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| || || |||| ATTGAAGCAA TCTGATCAAG TCATCATCAG CCAAATTTAA CTGACTTTTG ATATCTGAGT 60 AACTCAATCT ATCTGACGAA TTAAACAATG ACAGAACAGC AGCCTGATAG GTTCCCAGAA 25295 |||||||||| |||||| | | ||||||| | | ||| |||| |||||| || ||||||| || AACTCAATCT ATCTGAAGCA TTAAACAGTA ATAGAGCAGC AGCCTGGTAA GTTCCCACAA 120 TCAATTCAAT GGTTTTTGAA TCAAACTTCC CAATGACGTT ACACGTACCC AATGAATAAA 25355 | | |||||| |||||||| |||||||| | || ||| || || |||||| | |||||||| TAAGTTCAAT AGTTTTTGAT TCAAACTTGC CATTGATATT GCATGTACCC AGTGAATAAA 180 TCCATGTCAG TTTCCTGTGT TTCGTTGTTG TCTGATAGAA TTCGTTGAAG ACTTGTACAC 25415 |||| |||| |||||||||| |||||| | | ||||||| || ||| |||||| |||| ||||| TCCAGGTCAA TTTCCTGTGT TTCGTTTTCG TCTGATAAAA TTCCTTGAAG ACTTCTACAC 240 ACTTAGCCAT CTCGACAGGT AGACTCAAAT CACAAGATTT ATAGCTAGGC CAGAACCCAC 25475 |||| |||| || ||||| ||||||| || || ||||||| ||| |||||| || || ||| ACTTCACCAT TTCCACAGGG AGACTCAGAT CAGAAGATTT ATAACTAGGC CAAAAGCCAG 300 TTGTAAGTAC TGTGACAGTT AGATCAATTC C---AGTA-C T--CGCGTTG TTGCTGAGAT 25529 ||||||| || ||||||||| | |||||||| | | || | | || |||| || ||||||| TTGTAAGAAC TGTGACAGTC AAATCAATTC CGGGATTAGC TGCCGAGTTG TTACTGAGAT 360 ATTCTTGAAA ATCGTTCTGA TTTTCCTTAG CTAACGTCAA GTCTGTTACC ATTCCCTCCA 25589 |||| ||||| | ||||| |||||||| | | | ||||| ||| || ||| |||||||||| ATTCCTGAAA GTGACTCTGA TTTTCCTTCG CCAGAGTCAA GTCCGTCACC ATTCCCTCCA 420 TCTTTGATGT AAACTGTCCA CCACAATACT GCTTTAGCTT CGTTAACATA AGCCTTTCGT 25649 ||||||| || |||||||||| ||||| | || |||||| ||| ||||| ||| |||||||| | TCTTTGACGT AAACTGTCCA CCACACTGCT GCTTTAACTT TGTTAAGATA AGCCTTTCAT 480 G 25650 | G 481 hqPGS_C09HBa0168F14.1-2+_SGN-E201552- (25176 25650) ******************************************************************************** EST sequence 189 -strand 653 n (File: SGN-E275405-) 1 GTCATCATCA GCCAAATTTA ACTGACTCTT GAATTCTGAG TAACTCAATC TATCTGAAGA 61 ATTAAACAAT AACAAAACAG CAGCCTGATA AGTTCCCAGA ATCAGTTCAA TGGTTTTTGA 121 ATCAAACTTC CCGTTGATGT TACACGTACC CAATGAATAA ATCCATGTCA ATTTCCTGTG 181 TTTCGTTTTT GTCTGATAGA ATTCCTTGAA GACTTCTACA CACTTCACCA TTTCCACAGG 241 GAGACACAAA TCAGAAGATT TATAACTAGG CCAGAACCCA GTTGTAAGAA CTGTGACAGT 301 TAAATCAATT CCAGGACTTG CGGCAGGGTT GTTGCTGAGA TATTCTTGAA AATGGTTTTG 361 ATTTTCCCTA GCCAAAGTCA AGTCTGTCAC CATCCCCTCC ATCTTTGATG TGAACTGCCC 421 ACCACACTGT TGCTTTAGCT TTGTTAAGAT AAGCCTTTCG TGGTCATCAT TGGCACTTTT 481 ATCGAAGAGC AGTCGACGAG AAAGCTTCTT CCTGTAGAAC TCTGCAAAAA GGTCTTTATC 541 ACTAATATAA GCGAGAAGCT TGACCACCTT ATCCAAGGTC TCCTCAATAT CATCATCACT 601 GAGTTTTTCG CTCCCACCTT TCTTAAGAAT ATTATCACAA AAAGAAGCAA GGA Predicted gene structure (within gDNA segment 23640 to 30488): Exon 1 25195 25841 ( 647 n); cDNA 1 653 ( 653 n); score: 0.873 MATCH C09HBa0168F14.1-2+ SGN-E275405- 0.873 647 0.991 C PGS_C09HBa0168F14.1-2+_SGN-E275405- (25195 25841) Alignment (genomic DNA sequence = upper lines): GTCATCATCA GCTAAATTTA ACTGACTTTT GATTTCCGAG TAACTCAATC TATCTGACGA 25254 |||||||||| || ||||||| ||||||| || || ||| ||| |||||||||| ||||||| || GTCATCATCA GCCAAATTTA ACTGACTCTT GAATTCTGAG TAACTCAATC TATCTGAAGA 60 ATTAAACAAT GACAGAACAG CAGCCTGATA GGTTCCCAGA ATCAATTCAA TGGTTTTTGA 25314 |||||||||| ||| ||||| |||||||||| ||||||||| |||| ||||| |||||||||| ATTAAACAAT AACAAAACAG CAGCCTGATA AGTTCCCAGA ATCAGTTCAA TGGTTTTTGA 120 ATCAAACTTC CCAATGACGT TACACGTACC CAATGAATAA ATCCATGTCA GTTTCCTGTG 25374 |||||||||| || ||| || |||||||||| |||||||||| |||||||||| ||||||||| ATCAAACTTC CCGTTGATGT TACACGTACC CAATGAATAA ATCCATGTCA ATTTCCTGTG 180 TTTCGTTGTT GTCTGATAGA ATTCGTTGAA GACTTGTACA CACTTAGCCA TCTCGACAGG 25434 ||||||| || |||||||||| |||| ||||| ||||| |||| ||||| ||| | || ||||| TTTCGTTTTT GTCTGATAGA ATTCCTTGAA GACTTCTACA CACTTCACCA TTTCCACAGG 240 TAGACTCAAA TCACAAGATT TATAGCTAGG CCAGAACCCA CTTGTAAGTA CTGTGACAGT 25494 |||| |||| ||| |||||| |||| ||||| |||||||||| ||||||| | |||||||||| GAGACACAAA TCAGAAGATT TATAACTAGG CCAGAACCCA GTTGTAAGAA CTGTGACAGT 300 TAGATCAATT CCAGTAC-T- C-GC---GTT GTTGCTGAGA TATTCTTGAA AATCGTTCTG 25548 || ||||||| |||| || | | || ||| |||||||||| |||||||||| ||| ||| || TAAATCAATT CCAGGACTTG CGGCAGGGTT GTTGCTGAGA TATTCTTGAA AATGGTTTTG 360 ATTTTCCTTA GCTAACGTCA AGTCTGTTAC CATTCCCTCC ATCTTTGATG TAAACTGTCC 25608 ||||||| || || || |||| ||||||| || ||| |||||| |||||||||| | ||||| || ATTTTCCCTA GCCAAAGTCA AGTCTGTCAC CATCCCCTCC ATCTTTGATG TGAACTGCCC 420 ACCACAATAC TGCTTTAGCT TCGTTAACAT AAGCCTTTCG TGTTCATCAT TAGCACATTT 25668 |||||| | |||||||||| | ||||| || |||||||||| || ||||||| | |||| ||| ACCACACTGT TGCTTTAGCT TTGTTAAGAT AAGCCTTTCG TGGTCATCAT TGGCACTTTT 480 ACTAAAGAGC AATCTACGAG AAAGCTTCTT CCTGCAGAAC TCTCCAAAAA GGTCTTTGTC 25728 | |||||| | || ||||| |||||||||| |||| ||||| ||| |||||| ||||||| || ATCGAAGAGC AGTCGACGAG AAAGCTTCTT CCTGTAGAAC TCTGCAAAAA GGTCTTTATC 540 ATTAATGTAC GCGAGAAGCT TTACCACCTT ATCCAACGTC TCCTCGATAG CATCATCACT 25788 | |||| || |||||||||| | |||||||| |||||| ||| ||||| ||| |||||||||| ACTAATATAA GCGAGAAGCT TGACCACCTT ATCCAAGGTC TCCTCAATAT CATCATCACT 600 AAGTTTTTCA CTTCCACCTT TCTTGAGAAT ACTATCACAA TACGAAGCAA GGA 25841 |||||||| || ||||||| |||| ||||| | |||||||| | ||||||| ||| GAGTTTTTCG CTCCCACCTT TCTTAAGAAT ATTATCACAA AAAGAAGCAA GGA 653 hqPGS_C09HBa0168F14.1-2+_SGN-E275405- (25195 25841) ******************************************************************************** EST sequence 118 -strand 672 n (File: SGN-E348210-) 1 GATAAGTTCC CAGAATCAGT TCAATGGTTT TTGAATCAAA CTCCCCGTTG ATGTTACACG 61 TACCCAATGA ATAAATCCAT GTCAATTTCC TGTGTTTCGT TTNTGTCTGA TAGAATTCCT 121 TGAAGACTTC TACACACTTC ACCATTTCCA CAGGGAGACA CAAATCAGAA GATTTATAAC 181 TAGGCCAGAA CCCAGTTGTA AGAACTGTGA CAGTTAAATC AATTCCAGGA CTTGCGGCAG 241 GGTTGTTGCT GAGATATTCT TGAAAATGGT TTTGATTTTC CCTAGCCAAA GTCAAGTCTG 301 TCACCATCCC CTCCATCTTT GATGTGAACT GCCCACCACA CTGTTGCTTT AGCTTTGTTA 361 AGATAAGCCT TTCGTGGTCA TCATTGGCAC TTTTATCGAA GAGCAGTCGA CGAGAAAGCT 421 TCTTCCTGTA GAACTCTGCA AAAAGGTCTT TATCACTAAT ATAAGCGAGA AGCTTGACCA 481 CCTTATCCAA GGTCTCCTCA ATATCATCAT CACTGAGTTT TTCGCTCCCA CCTTTCTTAA 541 GAATATTATC ACAAAAAGAA GCAAGGAGCT CTGCACTTGA ACAACCAGAT ACAATTTTGT 601 TGCAGAAGAC CTCAAATGCC TCCTTGAGAG CCTTATAAAG AGAGAGTTAT TAGCAAAACA 661 GTTCGTAACA TA Predicted gene structure (within gDNA segment 24500 to 31691): Exon 1 25281 25947 ( 667 n); cDNA 1 672 ( 672 n); score: 0.871 MATCH C09HBa0168F14.1-2+ SGN-E348210- 0.871 667 0.993 C PGS_C09HBa0168F14.1-2+_SGN-E348210- (25281 25947) Alignment (genomic DNA sequence = upper lines): GATAGGTTCC CAGAATCAAT TCAATGGTTT TTGAATCAAA CTTCCCAATG ACGTTACACG 25340 |||| ||||| |||||||| | |||||||||| |||||||||| || ||| || | |||||||| GATAAGTTCC CAGAATCAGT TCAATGGTTT TTGAATCAAA CTCCCCGTTG ATGTTACACG 60 TACCCAATGA ATAAATCCAT GTCAGTTTCC TGTGTTTCGT TGTTGTCTGA TAGAATTCGT 25400 |||||||||| |||||||||| |||| ||||| |||||||||| | ||||||| |||||||| | TACCCAATGA ATAAATCCAT GTCAATTTCC TGTGTTTCGT TTNTGTCTGA TAGAATTCCT 120 TGAAGACTTG TACACACTTA GCCATCTCGA CAGGTAGACT CAAATCACAA GATTTATAGC 25460 ||||||||| ||||||||| |||| || | |||| |||| ||||||| || |||||||| | TGAAGACTTC TACACACTTC ACCATTTCCA CAGGGAGACA CAAATCAGAA GATTTATAAC 180 TAGGCCAGAA CCCACTTGTA AGTACTGTGA CAGTTAGATC AATTCCAGTA C-T-C-GC-- 25515 |||||||||| |||| ||||| || ||||||| |||||| ||| |||||||| | | | | || TAGGCCAGAA CCCAGTTGTA AGAACTGTGA CAGTTAAATC AATTCCAGGA CTTGCGGCAG 240 -GTTGTTGCT GAGATATTCT TGAAAATCGT TCTGATTTTC CTTAGCTAAC GTCAAGTCTG 25574 ||||||||| |||||||||| ||||||| || | |||||||| | |||| || |||||||||| GGTTGTTGCT GAGATATTCT TGAAAATGGT TTTGATTTTC CCTAGCCAAA GTCAAGTCTG 300 TTACCATTCC CTCCATCTTT GATGTAAACT GTCCACCACA ATACTGCTTT AGCTTCGTTA 25634 | ||||| || |||||||||| ||||| |||| | |||||||| | |||||| ||||| |||| TCACCATCCC CTCCATCTTT GATGTGAACT GCCCACCACA CTGTTGCTTT AGCTTTGTTA 360 ACATAAGCCT TTCGTGTTCA TCATTAGCAC ATTTACTAAA GAGCAATCTA CGAGAAAGCT 25694 | |||||||| |||||| ||| ||||| |||| |||| || ||||| || | |||||||||| AGATAAGCCT TTCGTGGTCA TCATTGGCAC TTTTATCGAA GAGCAGTCGA CGAGAAAGCT 420 TCTTCCTGCA GAACTCTCCA AAAAGGTCTT TGTCATTAAT GTACGCGAGA AGCTTTACCA 25754 |||||||| | ||||||| || |||||||||| | ||| |||| || |||||| ||||| |||| TCTTCCTGTA GAACTCTGCA AAAAGGTCTT TATCACTAAT ATAAGCGAGA AGCTTGACCA 480 CCTTATCCAA CGTCTCCTCG ATAGCATCAT CACTAAGTTT TTCACTTCCA CCTTTCTTGA 25814 |||||||||| |||||||| ||| |||||| |||| ||||| ||| || ||| |||||||| | CCTTATCCAA GGTCTCCTCA ATATCATCAT CACTGAGTTT TTCGCTCCCA CCTTTCTTAA 540 GAATACTATC ACAATACGAA GCAAGGAGCT CTGCACTTGA ACAACCCGAT ACAATCTTGT 25874 ||||| |||| |||| | ||| |||||||||| |||||||||| |||||| ||| ||||| |||| GAATATTATC ACAAAAAGAA GCAAGGAGCT CTGCACTTGA ACAACCAGAT ACAATTTTGT 600 TACAAAACAC CTCAAATGCC TCCTTGAGAG CCTTATGAAA CAGAGAGTGA TTAGCAAAAC 25934 | || || || |||||||||| |||||||||| |||||| ||| ||||||| | |||||||||| TGCAGAAGAC CTCAAATGCC TCCTTGAGAG CCTTAT-AAA GAGAGAGTTA TTAGCAAAAC 659 AGCTCGTAAC ATA 25947 || ||||||| ||| AGTTCGTAAC ATA 672 hqPGS_C09HBa0168F14.1-2+_SGN-E348210- (25281 25947) ******************************************************************************** EST sequence 207 -strand 709 n (File: SGN-E344515-) 1 TCCTGAAAGT GACTCTGATT TTCTTTCGCC AGAGTCAAGT CCGTCACCAT TCCCTCCATC 61 TTTGACGTAA ACTGTCCACC ACACTGCTGC TTTAACTTTG TTAAGATAAG CCTTTCATGG 121 TCATCATTGG CACTTTTATC AAAAAGCAGT CGCCGAGAAA GCTTCTTCCT GTAGAACTCA 181 GCAAAAAGGT CCTTGTCACT GATATACGCA AGAAGCTTCA CCACCTTATC TAATGTCTCC 241 TCAATAGCAT CATCACTGAG TTTCTCACTC CCGCCCTTCT TAAGGATATT ATCACAATAA 301 GAGGCAAGGA GTTCTGCACT AGAACAGCCA GCAACAATTT TGTTACAGAA GACCTCAAAT 361 GCCTCTTTCA AAGCCTTGTG AAAGAGAGAG TTATTTGCAA AACTGTCGGT CACATATGCC 421 ATATATTTGT CATGCAGCTC AATAACCTTC CTAACAAAGA CCTGCTCCTG TGACCCACTG 481 GAACTTTCAG CCTTGTTACT TGCTGAGTCT TCGGCCTGTT GCACCAATAC CATGCCTTCA 541 GCAGTGACAT GCTGCTTAAA CATATTTGCA ACTGGTTCCA AACCTTTAGG GATCCTGTGG 601 AATAGCCTGT ACATTCGAGA TAAATCCTCT ACCTTATCAT CTCTAAGCAA AGCTCGGCAT 661 CCAGAATGCT CCTTCTCAAG CAATTGATTG GTATATACAA CCAATAATT Predicted gene structure (within gDNA segment 24517 to 27110): Exon 1 25532 26222 ( 691 n); cDNA 1 709 ( 709 n); score: 0.753 MATCH C09HBa0168F14.1-2+ SGN-E344515- 0.753 691 0.975 C PGS_C09HBa0168F14.1-2+_SGN-E344515- (25532 26222) Alignment (genomic DNA sequence = upper lines): TCTTGAAAAT CGTTCTGATT TTCCTTAGCT AACGTCAAGT CTGTTACCAT TCCCTCCATC 25591 || ||||| | ||||||| ||| || || | ||||||| | || ||||| |||||||||| TCCTGAAAGT GACTCTGATT TTCTTTCGCC AGAGTCAAGT CCGTCACCAT TCCCTCCATC 60 TTTGATGTAA ACTGTCCACC ACAATACTGC TTTAGCTTCG TTAACATAAG CCTTTCGTGT 25651 ||||| |||| |||||||||| ||| | |||| |||| ||| | |||| ||||| |||||| || TTTGACGTAA ACTGTCCACC ACACTGCTGC TTTAACTTTG TTAAGATAAG CCTTTCATGG 120 TCATCATTAG CACATTTACT AAAGAGCAAT CTACGAGAAA GCTTCTTCCT GCAGAACTCT 25711 |||||||| | ||| |||| ||| |||| | | ||||||| |||||||||| | ||||||| TCATCATTGG CACTTTTATC AAAAAGCAGT CGCCGAGAAA GCTTCTTCCT GTAGAACTCA 180 CCAAAAAGGT CTTTGTCATT AATGTACGCG AGAAGCTTTA CCACCTTATC CAACGTCTCC 25771 ||||||||| | |||||| | || ||||| |||||||| | |||||||||| || |||||| GCAAAAAGGT CCTTGTCACT GATATACGCA AGAAGCTTCA CCACCTTATC TAATGTCTCC 240 TCGATAGCAT CATCACTAAG TTTTTCACTT CCACCTTTCT TGAGAATACT ATCACAATAC 25831 || ||||||| ||||||| || ||| ||||| || || |||| | || ||| | ||||||||| TCAATAGCAT CATCACTGAG TTTCTCACTC CCGCCCTTCT TAAGGATATT ATCACAATAA 300 GAAGCAAGGA GCTCTGCACT TGAACAACCC GATACAATCT TGTTACAAAA CACCTCAAAT 25891 || ||||||| | |||||||| ||||| || | ||||| | ||||||| || ||||||||| GAGGCAAGGA GTTCTGCACT AGAACAGCCA GCAACAATTT TGTTACAGAA GACCTCAAAT 360 GCCTCCTTGA GAGCCTTATG AAACAGAGAG TGATTAGCAA AACAGCTCGT AACATAACTC 25951 ||||| || | |||||| || ||| |||||| | ||| |||| ||| | || ||||| | GCCTCTTTCA AAGCCTTGTG AAAGAGAGAG TTATTTGCAA AACTGTCGGT CACATATGCC 420 ATATACTTAT CGTAAAGCTC AATGACCTTC CTAACAAAGA --AG-----G -G----A--- 25996 ||||| || | | | ||||| ||| |||||| |||||||||| | | | | ATATATTTGT CATGCAGCTC AATAACCTTC CTAACAAAGA CCTGCTCCTG TGACCCACTG 480 G---TTTCAG ACTGTCTATT TGTCGTATCA TCAGCCTGTT GCACTAAGTA CATCCCTTCA 26053 | |||||| || || | || | || || ||||||| |||| || ||| |||||| GAACTTTCAG CCTTGTTACT TGCTGAGTCT TCGGCCTGTT GCACCAATAC CATGCCTTCA 540 GCAACGACGT GCTGCTTAAA CATAGCTGAA ACAGGTACCA ATCCCTTGTC GATTTTGTAG 26113 ||| ||| | |||||||||| |||| || | || ||| ||| | || || ||| ||| | GCAGTGACAT GCTGCTTAAA CATATTTGCA ACTGGTTCCA AACCTTTAGG GATCCTGTGG 600 AACAGCCTAT ACATTCGAGA TAAATCATCT ACCTTATCAT CTCTAAGCAA TACTCGAATT 26173 || ||||| | |||||||||| |||||| ||| |||||||||| |||||||||| |||| | AATAGCCTGT ACATTCGAGA TAAATCCTCT ACCTTATCAT CTCTAAGCAA AGCTCGGCAT 660 CCAGAATGCT CCTTCTCGAG TAACTGATTC GTATATACAA CCAACAATT 26222 |||||||||| ||||||| || || ||||| |||||||||| |||| |||| CCAGAATGCT CCTTCTCAAG CAATTGATTG GTATATACAA CCAATAATT 709 hqPGS_C09HBa0168F14.1-2+_SGN-E344515- (25532 26222) ******************************************************************************** EST sequence 251 -strand 493 n (File: SGN-E331213-) 1 CAATAGCATC ATCACTGAGT TTCTCACTCC CGCCCTTCTT AAGGATATTA TCACAATAAG 61 AGGCAAGGAG TTCTGCACTA GAACAGCCAG CAACAATTTT GTTACAGAAG ACCTCAAATG 121 CCTCTTTCAA AGCCTTGTGA AAGAGAGAGT TATTTGCAAA ACTGTCGGTC ACATATGCCA 181 TATATTTGTC ATGCAGCTCA ATAACCTTCC TAACAAAGAC CTGCTCCTGT GACCCACTGG 241 AACTTTCAGC CTTGTTACTT GCTGAGTCTT CGGCCTGTTG CACCAATACC ATGCCTTCAG 301 CAGTGACATG CTGCTTAAAC ATATTTGCAA CTGGTTCCAA ACCTTTAGGG ATCCTGTGGA 361 ATAGCCTGTA CATTCGAGAT AAATCCTCTA CCTTATCATC TCTAAGCAAA GCTCGGCATC 421 CAGAATGCTC CTTCTCAAGC AATTGATTGG TATATACAAC CAATAATTCA TTTTGCACTT 481 TCTCCAGAAG TTT Predicted gene structure (within gDNA segment 21833 to 27360): Exon 1 25775 26247 ( 473 n); cDNA 3 493 ( 491 n); score: 0.715 MATCH C09HBa0168F14.1-2+ SGN-E331213- 0.715 473 0.959 C PGS_C09HBa0168F14.1-2+_SGN-E331213- (25775 26247) Alignment (genomic DNA sequence = upper lines): ATAGCATCAT CACTAAGTTT TTCACTTCCA CCTTTCTTGA GAATACTATC ACAATACGAA 25834 |||||||||| |||| ||||| ||||| || || ||||| | | ||| |||| |||||| || ATAGCATCAT CACTGAGTTT CTCACTCCCG CCCTTCTTAA GGATATTATC ACAATAAGAG 62 GCAAGGAGCT CTGCACTTGA ACAACCCGAT ACAATCTTGT TACAAAACAC CTCAAATGCC 25894 |||||||| | ||||||| || ||| || | ||||| |||| |||| || || |||||||||| GCAAGGAGTT CTGCACTAGA ACAGCCAGCA ACAATTTTGT TACAGAAGAC CTCAAATGCC 122 TCCTTGAGAG CCTTATGAAA CAGAGAGTGA TTAGCAAAAC AGCTCGTAAC ATAACTCATA 25954 || || | || |||| ||||| ||||||| | || ||||||| | || || ||| |||| TCTTTCAAAG CCTTGTGAAA GAGAGAGTTA TTTGCAAAAC TGTCGGTCAC ATATGCCATA 182 TACTTATCGT AAAGCTCAAT GACCTTCCTA ACAAAGA--A G--GGAGTTT CAGACT-G-T 26008 || || || | |||||||| ||||||||| ||||||| | || | ||| | TATTTGTCAT GCAGCTCAAT AACCTTCCTA ACAAAGACCT GCTCCTGTGA CCCACTGGAA 242 CTAT-----T TG-T-C--G- T-A-TCATCA GCCTGTTGCA CTAAGTACAT CCCTTCAGCA 26056 || | | || | | | | | || || |||||||||| | || ||| ||||||||| CTTTCAGCCT TGTTACTTGC TGAGTCTTCG GCCTGTTGCA CCAATACCAT GCCTTCAGCA 302 ACGACGTGCT GCTTAAACAT AGCTGAAACA GGTACCAATC CCTTGTCGAT TTTGTAGAAC 26116 ||| |||| |||||||||| | || ||| ||| |||| | | || ||| ||| ||| GTGACATGCT GCTTAAACAT ATTTGCAACT GGTTCCAAAC CTTTAGGGAT CCTGTGGAAT 362 AGCCTATACA TTCGAGATAA ATCATCTACC TTATCATCTC TAAGCAATAC TCGAATTCCA 26176 ||||| |||| |||||||||| ||| |||||| |||||||||| ||||||| | ||| |||| AGCCTGTACA TTCGAGATAA ATCCTCTACC TTATCATCTC TAAGCAAAGC TCGGCATCCA 422 GAATGCTCCT TCTCGAGTAA CTGATTCGTA TATACAACCA ACAATTCATA TCGCACTTTC 26236 |||||||||| |||| || || ||||| ||| |||||||||| | ||||||| | |||||||| GAATGCTCCT TCTCAAGCAA TTGATTGGTA TATACAACCA ATAATTCATT TTGCACTTTC 482 TCTAAAAGTT T 26247 || | ||||| | TCCAGAAGTT T 493 hqPGS_C09HBa0168F14.1-2+_SGN-E331213- (25775 26247) ******************************************************************************** EST sequence 210 -strand 505 n (File: SGN-E208080-) 1 ACATATGCCA TATATTTGTC ATGCAGCTCA ATAACCTTCC TAACAAAGAC CTGCTCCTGT 61 GACCCACTGG AACTTTCAGC CTGCTTAAAC ATATTTGCAA CTGGTTCCAA ACCTTTAGGG 121 ATCCTGTGGA ATAGCCTGTA CATTCGAGAT AAATCCTCTA CCTTATCATC TCTAAGCAAA 181 GCTCGGCATC CAGAATGCTC CTTCTCAAGC AATTGATTGG TATATACAAC CAATAATTCA 241 TTTTGCACTT TCTCCAGAAG TTTTGTCTCG CTGCTTGAGT GCAAATAATG AGAAACTCTA 301 TCCTTCTCTT TTTTCAAGCA CTCTTCTGCC TTCAACATAT AATCTGGACA AGAATCTTCC 361 ACAATCCAGT TTGATGCTTT TCGAGAATAA TAAGCTGATG TATCTTTAAG CATTGCATCT 421 TCAAAGTCAT TTTCATAGAA CTCCATTTCC CCCATCCCAA TTTCAACAAA TATACCTAGC 481 ACGTTCTTTA ATAAGGCTCT ATCAA Predicted gene structure (within gDNA segment 24133 to 29780): Exon 1 26065 26489 ( 425 n); cDNA 81 505 ( 425 n); score: 0.798 MATCH C09HBa0168F14.1-2+ SGN-E208080- 0.798 425 0.842 C PGS_C09HBa0168F14.1-2+_SGN-E208080- (26065 26489) Alignment (genomic DNA sequence = upper lines): CTGCTTAAAC ATAGCTGAAA CAGGTACCAA TCCCTTGTCG ATTTTGTAGA ACAGCCTATA 26124 |||||||||| ||| || || | ||| |||| || || | || ||| || | ||||| || CTGCTTAAAC ATATTTGCAA CTGGTTCCAA ACCTTTAGGG ATCCTGTGGA ATAGCCTGTA 140 CATTCGAGAT AAATCATCTA CCTTATCATC TCTAAGCAAT ACTCGAATTC CAGAATGCTC 26184 |||||||||| ||||| |||| |||||||||| ||||||||| |||| || |||||||||| CATTCGAGAT AAATCCTCTA CCTTATCATC TCTAAGCAAA GCTCGGCATC CAGAATGCTC 200 CTTCTCGAGT AACTGATTCG TATATACAAC CAACAATTCA TATCGCACTT TCTCTAAAAG 26244 |||||| || || ||||| | |||||||||| ||| |||||| | | |||||| |||| | ||| CTTCTCAAGC AATTGATTGG TATATACAAC CAATAATTCA TTTTGCACTT TCTCCAGAAG 260 TTTCGACTCA CTAACAACAT GGAGATAATT CGATACTCTC TCTTTCTCCT TCTTCAAACA 26304 ||| | ||| || | | | ||||| || ||||| || ||||| | | ||||| || TTTTGTCTCG CTGCTTGAGT GCAAATAATG AGAAACTCTA TCCTTCTCTT TTTTCAAGCA 320 CTCCTCTGCG TTCAACATAT AATCAGGACA CGAATCTTCC CCAATCCAAC TTGAAGCTTT 26364 ||| ||||| |||||||||| |||| ||||| ||||||||| ||||||| |||| ||||| CTCTTCTGCC TTCAACATAT AATCTGGACA AGAATCTTCC ACAATCCAGT TTGATGCTTT 380 ACGAGAGTAA TAACCTGCAG TATCTTCAAG CATTGCAAAT TCAAAATCAT TCACGTAGCA 26424 ||||| ||| ||| ||| | |||||| ||| ||||||| | ||||| |||| | | ||| | TCGAGAATAA TAAGCTGATG TATCTTTAAG CATTGCATCT TCAAAGTCAT TTTCATAGAA 440 CTCCATATTC CCCATCCCAA CTGCAACGAA TATATCAACC ACACTCTTCA ATAAACTTCT 26484 |||||| | | |||||||||| | |||| || |||| | | | || |||| | |||| ||| CTCCATTTCC CCCATCCCAA TTTCAACAAA TATACCTAGC ACGTTCTTTA ATAAGGCTCT 500 GTCAA 26489 |||| ATCAA 505 hqPGS_C09HBa0168F14.1-2+_SGN-E208080- (26065 26489) ******************************************************************************** EST sequence 25 +strand 690 n (File: SGN-E315321+) 1 TTAGACTTGA CGAATAAAAT TAATTCTTCA AAGGCCTTGT ACATATCTCA CTTTGAGGCT 61 ATGCAAAATG TAGTGAAGCT GCATAAAGCC ACTTCTAATG CTGCTCTGGA GGAAATTTCG 121 ACTTTGGCTT CTTCTAATTC AATTTCCACT AAAGAATTTT TAGATGCAGA GTCTGTTGAA 181 ACAAATTTAA TTTTTGATGA ACTTCAGAAC ACTCTGTCAA CCCACCAAGG AGAAATGGCA 241 AATTTTGCTA GAGAGCTTCG TCAGAGATTT AATGACAGTA CAGAGCATTT GACAAATATC 301 TCTGAGATCA TACAAGGATT TTTTGACAAA CTTTTAGAAG AATCAAAAAG ACTTGAAAGA 361 CATTCAACAA CAGCTGATGA GATTCAAACG AAGTCTATTG CTGAATTTGA GAAGGCATAT 421 GAGGAGCAAT CAAGATCAGA TGCAGAAAAG CTTATTGCTG AGGTGACTTC CTTGGTCTCG 481 AATCACATGC GTCGCCAAAA GAAACTGGTT GGTGCAAGGC TTGGTGATCT TAGAGAAACT 541 GTTTCTGGAA ATAAGACATT CTTGGATGGG CATGTATCCT CTATGGAAGG TATTACAACA 601 GATACAAAAA GAAAATGGCA GGACTTTTAT ACGCAAGCAG AAGGTGAGAC CAAAGAAAAT 661 GCTGATTTCT CAGCTGCTAA ACATTGCCGA Predicted gene structure (within gDNA segment 33376 to 35695): Exon 1 33976 34131 ( 156 n); cDNA 1 156 ( 156 n); score: 1.000 Intron 1 34132 34245 ( 114 n); Pd: 0.488 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 34246 34353 ( 108 n); cDNA 157 264 ( 108 n); score: 1.000 Intron 2 34354 34501 ( 148 n); Pd: 0.983 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 3 34502 34660 ( 159 n); cDNA 265 423 ( 159 n); score: 1.000 Intron 3 34661 34732 ( 72 n); Pd: 1.000 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 4 34733 34816 ( 84 n); cDNA 424 507 ( 84 n); score: 0.976 Intron 4 34817 34902 ( 86 n); Pd: 0.999 (s: 0.96), Pa: 0.969 (s: 1.00) Exon 5 34903 35085 ( 183 n); cDNA 508 690 ( 183 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E315321+ 0.997 690 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E315321+ (33976 34131,34246 34353,34502 34660,34733 34816,34903 35085) Alignment (genomic DNA sequence = upper lines): TTAGACTTGA CGAATAAAAT TAATTCTTCA AAGGCCTTGT ACATATCTCA CTTTGAGGCT 34035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGACTTGA CGAATAAAAT TAATTCTTCA AAGGCCTTGT ACATATCTCA CTTTGAGGCT 60 ATGCAAAATG TAGTGAAGCT GCATAAAGCC ACTTCTAATG CTGCTCTGGA GGAAATTTCG 34095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAAAATG TAGTGAAGCT GCATAAAGCC ACTTCTAATG CTGCTCTGGA GGAAATTTCG 120 ACTTTGGCTT CTTCTAATTC AATTTCCACT AAAGAAGTAT GACATGAAAG TTTTGCTTTC 34155 |||||||||| |||||||||| |||||||||| |||||| ACTTTGGCTT CTTCTAATTC AATTTCCACT AAAGAA.... .......... .......... 156 AGCTTCTGAT GTATTTGGAT TTCTGTCCAT GTAAAATAAT AGATGTATTT GTGATTTGAA 34215 .......... .......... .......... .......... .......... .......... 156 TATCTTTCTT TCTTCCTCTA CTTGTTGCAG TTTTTAGATG CAGAGTCTGT TGAAACAAAT 34275 |||||||||| |||||||||| |||||||||| .......... .......... .......... TTTTTAGATG CAGAGTCTGT TGAAACAAAT 186 TTAATTTTTG ATGAACTTCA GAACACTCTG TCAACCCACC AAGGAGAAAT GGCAAATTTT 34335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTTTTG ATGAACTTCA GAACACTCTG TCAACCCACC AAGGAGAAAT GGCAAATTTT 246 GCTAGAGAGC TTCGTCAGGT TTCCTTATGC ACTTTACTTG TAAATTTTGA TTGATAATCA 34395 |||||||||| |||||||| GCTAGAGAGC TTCGTCAG.. .......... .......... .......... .......... 264 ACACTTATTA CATCCAGAGA TTTGGTAGTT AAAGTTCATT TGAGGATATA GTTCTGCATT 34455 .......... .......... .......... .......... .......... .......... 264 TTTCATTCTT TTCATGTTCA TCATTGTTTT TTTTCCAATC ATGTAGAGAT TTAATGACAG 34515 |||| |||||||||| .......... .......... .......... .......... ......AGAT TTAATGACAG 278 TACAGAGCAT TTGACAAATA TCTCTGAGAT CATACAAGGA TTTTTTGACA AACTTTTAGA 34575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAGAGCAT TTGACAAATA TCTCTGAGAT CATACAAGGA TTTTTTGACA AACTTTTAGA 338 AGAATCAAAA AGACTTGAAA GACATTCAAC AACAGCTGAT GAGATTCAAA CGAAGTCTAT 34635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATCAAAA AGACTTGAAA GACATTCAAC AACAGCTGAT GAGATTCAAA CGAAGTCTAT 398 TGCTGAATTT GAGAAGGCAT ATGAGGTATG CCTTATAGAC CTGATACAAC AATGTTGTTG 34695 |||||||||| |||||||||| ||||| TGCTGAATTT GAGAAGGCAT ATGAG..... .......... .......... .......... 423 TTCCTCTAAT TTTGATGTCT GTGTTTGTCT ACTTTAGGAG CAATCAAGAT CAGATGCAGA 34755 ||| |||||||||| |||||||||| .......... .......... .......... .......GAG CAATCAAGAT CAGATGCAGA 446 AAAGCTTATT GCTGAGGTGA CTTCCTTGGT CTCGAATCAC ATGCGTCGCC AAAAAGAACT 34815 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| AAAGCTTATT GCTGAGGTGA CTTCCTTGGT CTCGAATCAC ATGCGTCGCC AAAAGAAACT 506 GGTTTGTTTT TTACTCTATG ATCTCCAATC TTATGTAATA TACATATGAT CTTTCTTCTG 34875 | G......... .......... .......... .......... .......... .......... 507 TTCCCTTTCT CAAAGTCTAC CTGACAGGTT GGTGCAAGGC TTGGTGATCT TAGAGAAACT 34935 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT GGTGCAAGGC TTGGTGATCT TAGAGAAACT 540 GTTTCTGGAA ATAAGACATT CTTGGATGGG CATGTATCCT CTATGGAAGG TATTACAACA 34995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCTGGAA ATAAGACATT CTTGGATGGG CATGTATCCT CTATGGAAGG TATTACAACA 600 GATACAAAAA GAAAATGGCA GGACTTTTAT ACGCAAGCAG AAGGTGAGAC CAAAGAAAAT 35055 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATACAAAAA GAAAATGGCA GGACTTTTAT ACGCAAGCAG AAGGTGAGAC CAAAGAAAAT 660 GCTGATTTCT CAGCTGCTAA ACATTGCCGA 35085 |||||||||| |||||||||| |||||||||| GCTGATTTCT CAGCTGCTAA ACATTGCCGA 690 hqPGS_C09HBa0168F14.1-2+_SGN-E315321+ (33976 34131,34246 34353,34502 34660,34733 34816,34903 35085) ******************************************************************************** EST sequence 78 +strand 647 n (File: SGN-E320551+) 1 AGGACTTTTA TACGCAAGCA GAAGGTGAGA CCAAAGAAAA TGCTGATTTC TCAGCTGCTA 61 AACATTGCCG AATGGAGTTA CTCATGCAGA AGTGTGTAAG CACAAGTGAA ACAACTGTGA 121 AACGGTGGCA AAGTACTCAT GAATTGGCAA AAGACATGTG CAATCAACAT GTTTCAACAA 181 TGCATTCAGT TGTCAGGAAC CTATGCGATA GCAATGAGCA ACATGTTATT GAATTCGATT 241 CCACAAGGGA AGCTGCTGAA GAAGCTGTGA AAAGGAATAG TGAAGATATC ATTAAATCTA 301 TTGACGGCTT GTCAGGGGAA GAGAGAGGAT CTATATCTGG CATTCTGGAT ACTGCCAGTG 361 CACACTCGGA GACCCTAGAT GAACTTAAGA AAGATCATTG CACACAGTCT ACCTCCATTG 421 AACAGAAGGC CATTGAAACA TTTCAGCAGA AGTTTATGGA TTATGAGCCA ACTGGAACAA 481 CACCAATTAG GTCTGAACCA GATGTACCAA GCAAGGGAAC AATTGAGTCG TTGCGAGCCA 541 TGCCAATGGA GACTCTACTA GAGGAATTTC GAGAGAACAT TCATTGGAGT CCTTCCAGTA 601 AAGGAACTAA AGCCATCACT TATACCACGA TCTCCTCTCT CACTGAT Predicted gene structure (within gDNA segment 34415 to 37876): Exon 1 35015 35108 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 35109 35310 ( 202 n); Pd: 0.993 (s: 1.00), Pa: 0.921 (s: 1.00) Exon 2 35311 35412 ( 102 n); cDNA 95 196 ( 102 n); score: 1.000 Intron 2 35413 36137 ( 725 n); Pd: 0.862 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 36138 36247 ( 110 n); cDNA 197 306 ( 110 n); score: 1.000 Intron 3 36248 36630 ( 383 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 36631 36782 ( 152 n); cDNA 307 458 ( 152 n); score: 1.000 Intron 4 36783 37075 ( 293 n); Pd: 0.996 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 37076 37266 ( 191 n); cDNA 459 647 ( 189 n); score: 0.990 MATCH C09HBa0168F14.1-2+ SGN-E320551+ 0.997 649 1.003 C PGS_C09HBa0168F14.1-2+_SGN-E320551+ (35015 35108,35311 35412,36138 36247,36631 36782,37076 37266) Alignment (genomic DNA sequence = upper lines): AGGACTTTTA TACGCAAGCA GAAGGTGAGA CCAAAGAAAA TGCTGATTTC TCAGCTGCTA 35074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACTTTTA TACGCAAGCA GAAGGTGAGA CCAAAGAAAA TGCTGATTTC TCAGCTGCTA 60 AACATTGCCG AATGGAGTTA CTCATGCAGA AGTGGTAAGT ATCTGAATTT GCACCTTATA 35134 |||||||||| |||||||||| |||||||||| |||| AACATTGCCG AATGGAGTTA CTCATGCAGA AGTG...... .......... .......... 94 TATGTGATTT TGCAAATTCT GCTAAGTTTC AGTAGTTGTT ATTTGGTTAA CTCAACTCTG 35194 .......... .......... .......... .......... .......... .......... 94 ATCTGAATTT GTTGGCCTTT TTCAACGAAT AGTTGTTTCT CCTTTACTCT ATTTCATTTT 35254 .......... .......... .......... .......... .......... .......... 94 AAATATATTT GCTTCTATTT TTTCCGTAAG CAATTGTGTC TGGCTTTTCT ATCCAGTGTA 35314 |||| .......... .......... .......... .......... .......... ......TGTA 98 AGCACAAGTG AAACAACTGT GAAACGGTGG CAAAGTACTC ATGAATTGGC AAAAGACATG 35374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACAAGTG AAACAACTGT GAAACGGTGG CAAAGTACTC ATGAATTGGC AAAAGACATG 158 TGCAATCAAC ATGTTTCAAC AATGCATTCA GTTGTCAGGT GAACTTTCGA TGTTACTTGA 35434 |||||||||| |||||||||| |||||||||| |||||||| TGCAATCAAC ATGTTTCAAC AATGCATTCA GTTGTCAG.. .......... .......... 196 TATTTTATTC TGCCTGAAGA GAGCAGATAA GTAACACATT GGTTATATAA ATGAAAGATG 35494 .......... .......... .......... .......... .......... .......... 196 TTTTGTAAAT ATATAAGAAT TAAACTCCTT AGTCTGAAAA GTAAATTGTC TAAAGCTATT 35554 .......... .......... .......... .......... .......... .......... 196 TTAAACATTT TATTTCGTTT ATTTATGACA AGAAAACTGC CTTCCTTTGC AAACAGATAA 35614 .......... .......... .......... .......... .......... .......... 196 ATAGAAATAA ACAACAGTTG TAATATTCCT ACCACCATCT AATTAAATTG TTGATTGGGA 35674 .......... .......... .......... .......... .......... .......... 196 AGGTTTCCAA GTTTTTGTAC AATTTTCAGT TCCTTTTTTT TGCCTATTAA CACTGTTAGC 35734 .......... .......... .......... .......... .......... .......... 196 TAAAGAAACT ATTTTTGGAA ATGTGTTTCC TATTTATTGA GACAACTTCA TTGGAGCTGG 35794 .......... .......... .......... .......... .......... .......... 196 GAATGAGAGT GTTCTCATGG ATGTTATGTA TTATTTTGTA CTGGTGAAAG ACAACCATCA 35854 .......... .......... .......... .......... .......... .......... 196 AGTAATTGAA ATTTGTTGGG ACTTGGGAGA ATATAAGATA ATTGCCTATA TCTAGAAGCG 35914 .......... .......... .......... .......... .......... .......... 196 CTTGGGGAAT TTGTGAGTGG TTACACTTTG TATTGTTAGC AAGAATGGAT CTCGGAAGGT 35974 .......... .......... .......... .......... .......... .......... 196 TTATGTCAAA TTACAGAACA TGAGCCTGCA GAAATATAAT GTATATTGAC TATGGTGTTG 36034 .......... .......... .......... .......... .......... .......... 196 GGTATTGAAA AGCAAATACG AGCTTATTAC TTTTTTTTGA AGAGAAATTT GAGCACTGCA 36094 .......... .......... .......... .......... .......... .......... 196 TCCTACATCA TTATGACATC CCTTTTTTTT CTTGCTGTTA CAGGAACCTA TGCGATAGCA 36154 ||||||| |||||||||| .......... .......... .......... .......... ...GAACCTA TGCGATAGCA 213 ATGAGCAACA TGTTATTGAA TTCGATTCCA CAAGGGAAGC TGCTGAAGAA GCTGTGAAAA 36214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGCAACA TGTTATTGAA TTCGATTCCA CAAGGGAAGC TGCTGAAGAA GCTGTGAAAA 273 GGAATAGTGA AGATATCATT AAATCTATTG ACGGTAAGTT TTTAAAAATT TGTCTAGTAT 36274 |||||||||| |||||||||| |||||||||| ||| GGAATAGTGA AGATATCATT AAATCTATTG ACG....... .......... .......... 306 GTTCTGATTT TGGGTCGTCG CTCTTGAGTT TTTTAAAAAA GAACAAAAGG TAGGCATGCT 36334 .......... .......... .......... .......... .......... .......... 306 GTTCAATACT AAAGAAACTC TTCTATAGAT AGGCATTTAG TTAGACATTT TGGAAGTAAA 36394 .......... .......... .......... .......... .......... .......... 306 TTGTGCTCAT ACAAGCAATA ATTCTAACAT GGTAAATGAT GTAGCACATT TCATTGTAGA 36454 .......... .......... .......... .......... .......... .......... 306 TTATCTAGTT TCGTCTGTCA TGATTAGTTC ATATTTTGGT TTGGGTGCTG CTGCCAAGTA 36514 .......... .......... .......... .......... .......... .......... 306 GTAATTTTTT CAGGAAAGTA ACTTATACAA TGGTGTCTTT TTTATGGTTG GCGTGATTTG 36574 .......... .......... .......... .......... .......... .......... 306 GTGATGACTA TTATGTGCTG TTTTGTAATG TTTCTCCTGG TTTCATTCTT ATCCAGGCTT 36634 |||| .......... .......... .......... .......... .......... ......GCTT 310 GTCAGGGGAA GAGAGAGGAT CTATATCTGG CATTCTGGAT ACTGCCAGTG CACACTCGGA 36694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGGGGAA GAGAGAGGAT CTATATCTGG CATTCTGGAT ACTGCCAGTG CACACTCGGA 370 GACCCTAGAT GAACTTAAGA AAGATCATTG CACACAGTCT ACCTCCATTG AACAGAAGGC 36754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCTAGAT GAACTTAAGA AAGATCATTG CACACAGTCT ACCTCCATTG AACAGAAGGC 430 CATTGAAACA TTTCAGCAGA AGTTTATGGT ATGTTGATCA AGAATCTTAC TATACTTTTA 36814 |||||||||| |||||||||| |||||||| CATTGAAACA TTTCAGCAGA AGTTTATG.. .......... .......... .......... 458 AAATGTTCAG GACTCTTTGC TGTTGGTTAG AAGATAAGAC AATGCTGTCA TACACCATTT 36874 .......... .......... .......... .......... .......... .......... 458 TCCGCATAAG TAGTGCAGTT CTGTTGGCCG AATAAGAAAA ATAAATCCCT ATATACCTAA 36934 .......... .......... .......... .......... .......... .......... 458 TACCTGTTTA GTTGACGTTA TTAGATAATA GAAACACTAA GCTAATAATC CATTCGTAGC 36994 .......... .......... .......... .......... .......... .......... 458 TCTTGTCATT TTCTAGCTAA GAAAAGACGT TGTACTGTGT ACTTGTGCTG AACTTTTATT 37054 .......... .......... .......... .......... .......... .......... 458 ACTTTTCTGA TTGATTTTCA GGATTATGAG CCAACTGGAA CAACACCAAT TAGGTCTGAA 37114 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GATTATGAG CCAACTGGAA CAACACCAAT TAGGTCTGAA 497 CCAGATGTAC CAAGCAAGGG AACAATTGAG TCGTTGCGAG CCATGCCAAT GGAGACTCTA 37174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGATGTAC CAAGCAAGGG AACAATTGAG TCGTTGCGAG CCATGCCAAT GGAGACTCTA 557 CTAGAGGAAT TTCGAGAGAA CAATTCATTG GAGTCCTTCC AAGTAAAGGA ACTAAAGCCA 37234 |||||||||| |||||||||| | |||||||| |||||||||| ||||||||| |||||||||| CTAGAGGAAT TTCGAGAGAA C-ATTCATTG GAGTCCTTCC -AGTAAAGGA ACTAAAGCCA 615 TCACTTATAC CACGATCTCC TCTCTCACTG AT 37266 |||||||||| |||||||||| |||||||||| || TCACTTATAC CACGATCTCC TCTCTCACTG AT 647 hqPGS_C09HBa0168F14.1-2+_SGN-E320551+ (35015 35108,35311 35412,36138 36247,36631 36782,37076 37266) ******************************************************************************** EST sequence 76 +strand 647 n (File: SGN-E320465+) 1 AGGACTTTTA TACGCAAGCA GAAGGTGAGA CCAAAGAAAA TGCTGATTTC TCAGCTGCTA 61 AACATTGCCG AATGGAGTTA CTCATGCAGA AGTGTGTAAG CACAAGTGAA ACAACTGTGA 121 AACGGTGGCA AAGTACTCAT GAATTGGCAA AAGACATGTG CAATCAACAT GTTTCAACAA 181 TGCATTCAGT TGTCACGAAC CTATGCGATA GCAATGAGCA ACATGTTATT GAATTCGATT 241 CCACAAGGGA AGCTGCTGAA CAAGCTGTGA GAAGGAATAG TGAAGATATC ATTAAATCTA 301 TTGACGGCTT GTCAAGGGAA GAGAGAGGAT CTATATCTGG CATTCTGGAT ACTGCCAGTG 361 CACACTCGGA GACCCTAGAT GAACTTAAGA AAGATCATTG CACACAGTCT ACCTCCATTG 421 AACAGAAGGC CATTGAAACA TTTCAGCAGA AGTTTATGGA TTATGAGCCA ACTGGAACAA 481 CACCAATTAG GTCTGAACCA GATGTACCAA GCAAGGGAAC GATTGAGTCG TTGCGAGCCA 541 TGCCAATGGA GACTCTACTA GAGGAATTTC GAGAGAACAA TTCATTGGAG TCCTTCCAGT 601 AAAGGAACTA AAGCCATCAC TTATACCACG ATCTCCTCTC TCACTGA Predicted gene structure (within gDNA segment 34415 to 37875): Exon 1 35015 35108 ( 94 n); cDNA 1 94 ( 94 n); score: 1.000 Intron 1 35109 35310 ( 202 n); Pd: 0.993 (s: 1.00), Pa: 0.921 (s: 1.00) Exon 2 35311 35412 ( 102 n); cDNA 95 196 ( 102 n); score: 0.990 Intron 2 35413 36137 ( 725 n); Pd: 0.862 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 3 36138 36247 ( 110 n); cDNA 197 306 ( 110 n); score: 0.982 Intron 3 36248 36630 ( 383 n); Pd: 1.000 (s: 0.96), Pa: 0.999 (s: 0.98) Exon 4 36631 36782 ( 152 n); cDNA 307 458 ( 152 n); score: 0.993 Intron 4 36783 37075 ( 293 n); Pd: 0.996 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 37076 37265 ( 190 n); cDNA 459 647 ( 189 n); score: 0.989 MATCH C09HBa0168F14.1-2+ SGN-E320465+ 0.991 648 1.002 C PGS_C09HBa0168F14.1-2+_SGN-E320465+ (35015 35108,35311 35412,36138 36247,36631 36782,37076 37265) Alignment (genomic DNA sequence = upper lines): AGGACTTTTA TACGCAAGCA GAAGGTGAGA CCAAAGAAAA TGCTGATTTC TCAGCTGCTA 35074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACTTTTA TACGCAAGCA GAAGGTGAGA CCAAAGAAAA TGCTGATTTC TCAGCTGCTA 60 AACATTGCCG AATGGAGTTA CTCATGCAGA AGTGGTAAGT ATCTGAATTT GCACCTTATA 35134 |||||||||| |||||||||| |||||||||| |||| AACATTGCCG AATGGAGTTA CTCATGCAGA AGTG...... .......... .......... 94 TATGTGATTT TGCAAATTCT GCTAAGTTTC AGTAGTTGTT ATTTGGTTAA CTCAACTCTG 35194 .......... .......... .......... .......... .......... .......... 94 ATCTGAATTT GTTGGCCTTT TTCAACGAAT AGTTGTTTCT CCTTTACTCT ATTTCATTTT 35254 .......... .......... .......... .......... .......... .......... 94 AAATATATTT GCTTCTATTT TTTCCGTAAG CAATTGTGTC TGGCTTTTCT ATCCAGTGTA 35314 |||| .......... .......... .......... .......... .......... ......TGTA 98 AGCACAAGTG AAACAACTGT GAAACGGTGG CAAAGTACTC ATGAATTGGC AAAAGACATG 35374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACAAGTG AAACAACTGT GAAACGGTGG CAAAGTACTC ATGAATTGGC AAAAGACATG 158 TGCAATCAAC ATGTTTCAAC AATGCATTCA GTTGTCAGGT GAACTTTCGA TGTTACTTGA 35434 |||||||||| |||||||||| |||||||||| ||||||| TGCAATCAAC ATGTTTCAAC AATGCATTCA GTTGTCAC.. .......... .......... 196 TATTTTATTC TGCCTGAAGA GAGCAGATAA GTAACACATT GGTTATATAA ATGAAAGATG 35494 .......... .......... .......... .......... .......... .......... 196 TTTTGTAAAT ATATAAGAAT TAAACTCCTT AGTCTGAAAA GTAAATTGTC TAAAGCTATT 35554 .......... .......... .......... .......... .......... .......... 196 TTAAACATTT TATTTCGTTT ATTTATGACA AGAAAACTGC CTTCCTTTGC AAACAGATAA 35614 .......... .......... .......... .......... .......... .......... 196 ATAGAAATAA ACAACAGTTG TAATATTCCT ACCACCATCT AATTAAATTG TTGATTGGGA 35674 .......... .......... .......... .......... .......... .......... 196 AGGTTTCCAA GTTTTTGTAC AATTTTCAGT TCCTTTTTTT TGCCTATTAA CACTGTTAGC 35734 .......... .......... .......... .......... .......... .......... 196 TAAAGAAACT ATTTTTGGAA ATGTGTTTCC TATTTATTGA GACAACTTCA TTGGAGCTGG 35794 .......... .......... .......... .......... .......... .......... 196 GAATGAGAGT GTTCTCATGG ATGTTATGTA TTATTTTGTA CTGGTGAAAG ACAACCATCA 35854 .......... .......... .......... .......... .......... .......... 196 AGTAATTGAA ATTTGTTGGG ACTTGGGAGA ATATAAGATA ATTGCCTATA TCTAGAAGCG 35914 .......... .......... .......... .......... .......... .......... 196 CTTGGGGAAT TTGTGAGTGG TTACACTTTG TATTGTTAGC AAGAATGGAT CTCGGAAGGT 35974 .......... .......... .......... .......... .......... .......... 196 TTATGTCAAA TTACAGAACA TGAGCCTGCA GAAATATAAT GTATATTGAC TATGGTGTTG 36034 .......... .......... .......... .......... .......... .......... 196 GGTATTGAAA AGCAAATACG AGCTTATTAC TTTTTTTTGA AGAGAAATTT GAGCACTGCA 36094 .......... .......... .......... .......... .......... .......... 196 TCCTACATCA TTATGACATC CCTTTTTTTT CTTGCTGTTA CAGGAACCTA TGCGATAGCA 36154 ||||||| |||||||||| .......... .......... .......... .......... ...GAACCTA TGCGATAGCA 213 ATGAGCAACA TGTTATTGAA TTCGATTCCA CAAGGGAAGC TGCTGAAGAA GCTGTGAAAA 36214 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||||||| || ATGAGCAACA TGTTATTGAA TTCGATTCCA CAAGGGAAGC TGCTGAACAA GCTGTGAGAA 273 GGAATAGTGA AGATATCATT AAATCTATTG ACGGTAAGTT TTTAAAAATT TGTCTAGTAT 36274 |||||||||| |||||||||| |||||||||| ||| GGAATAGTGA AGATATCATT AAATCTATTG ACG....... .......... .......... 306 GTTCTGATTT TGGGTCGTCG CTCTTGAGTT TTTTAAAAAA GAACAAAAGG TAGGCATGCT 36334 .......... .......... .......... .......... .......... .......... 306 GTTCAATACT AAAGAAACTC TTCTATAGAT AGGCATTTAG TTAGACATTT TGGAAGTAAA 36394 .......... .......... .......... .......... .......... .......... 306 TTGTGCTCAT ACAAGCAATA ATTCTAACAT GGTAAATGAT GTAGCACATT TCATTGTAGA 36454 .......... .......... .......... .......... .......... .......... 306 TTATCTAGTT TCGTCTGTCA TGATTAGTTC ATATTTTGGT TTGGGTGCTG CTGCCAAGTA 36514 .......... .......... .......... .......... .......... .......... 306 GTAATTTTTT CAGGAAAGTA ACTTATACAA TGGTGTCTTT TTTATGGTTG GCGTGATTTG 36574 .......... .......... .......... .......... .......... .......... 306 GTGATGACTA TTATGTGCTG TTTTGTAATG TTTCTCCTGG TTTCATTCTT ATCCAGGCTT 36634 |||| .......... .......... .......... .......... .......... ......GCTT 310 GTCAGGGGAA GAGAGAGGAT CTATATCTGG CATTCTGGAT ACTGCCAGTG CACACTCGGA 36694 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAGGGAA GAGAGAGGAT CTATATCTGG CATTCTGGAT ACTGCCAGTG CACACTCGGA 370 GACCCTAGAT GAACTTAAGA AAGATCATTG CACACAGTCT ACCTCCATTG AACAGAAGGC 36754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCTAGAT GAACTTAAGA AAGATCATTG CACACAGTCT ACCTCCATTG AACAGAAGGC 430 CATTGAAACA TTTCAGCAGA AGTTTATGGT ATGTTGATCA AGAATCTTAC TATACTTTTA 36814 |||||||||| |||||||||| |||||||| CATTGAAACA TTTCAGCAGA AGTTTATG.. .......... .......... .......... 458 AAATGTTCAG GACTCTTTGC TGTTGGTTAG AAGATAAGAC AATGCTGTCA TACACCATTT 36874 .......... .......... .......... .......... .......... .......... 458 TCCGCATAAG TAGTGCAGTT CTGTTGGCCG AATAAGAAAA ATAAATCCCT ATATACCTAA 36934 .......... .......... .......... .......... .......... .......... 458 TACCTGTTTA GTTGACGTTA TTAGATAATA GAAACACTAA GCTAATAATC CATTCGTAGC 36994 .......... .......... .......... .......... .......... .......... 458 TCTTGTCATT TTCTAGCTAA GAAAAGACGT TGTACTGTGT ACTTGTGCTG AACTTTTATT 37054 .......... .......... .......... .......... .......... .......... 458 ACTTTTCTGA TTGATTTTCA GGATTATGAG CCAACTGGAA CAACACCAAT TAGGTCTGAA 37114 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GATTATGAG CCAACTGGAA CAACACCAAT TAGGTCTGAA 497 CCAGATGTAC CAAGCAAGGG AACAATTGAG TCGTTGCGAG CCATGCCAAT GGAGACTCTA 37174 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CCAGATGTAC CAAGCAAGGG AACGATTGAG TCGTTGCGAG CCATGCCAAT GGAGACTCTA 557 CTAGAGGAAT TTCGAGAGAA CAATTCATTG GAGTCCTTCC AAGTAAAGGA ACTAAAGCCA 37234 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTAGAGGAAT TTCGAGAGAA CAATTCATTG GAGTCCTTCC -AGTAAAGGA ACTAAAGCCA 616 TCACTTATAC CACGATCTCC TCTCTCACTG A 37265 |||||||||| |||||||||| |||||||||| | TCACTTATAC CACGATCTCC TCTCTCACTG A 647 hqPGS_C09HBa0168F14.1-2+_SGN-E320465+ (35015 35108,35311 35412,36138 36247,36631 36782,37076 37265) ******************************************************************************** EST sequence 70 +strand 416 n (File: SGN-E354281+) 1 CCAACTGGAA CAACACCAAT TAGGTCTGAA CCAGATGTAC CAAGCAAGGG AACAATTGAG 61 TCGTTGCGAG CCATGCCAAT GGAGACTCTA CTAGAGGAAT TTCGAGAGAA CAATTCATTG 121 GAGTCCTTCC AAGTAAAGGA ACTAAAGCCA TCACTTATAC CACGATCTCC TCTCTCACTG 181 ATTAACAATT AGCAGATTGG TCTCATCGTT CCCTCGTGCA TATGATCACT TAATCTGTAT 241 CGGTATTTTC CTTGTATACT GAGTGAATAC TGCAAACTGC AGTATATATT GTAGGTTGAT 301 TGGCACAGTC TTAAACAATA AATCCCACCT TGGGATTTAG AAAAATGGCT GTAAATGAGT 361 AACTCTTGGT ACATTTATTT AGTAAAAGAT GGTGCTCTCT ATGTAAAAAA AAAAAA Predicted gene structure (within gDNA segment 36485 to 38209): Exon 1 37085 37498 ( 414 n); cDNA 1 414 ( 414 n); score: 0.986 MATCH C09HBa0168F14.1-2+ SGN-E354281+ 0.986 414 0.995 C PGS_C09HBa0168F14.1-2+_SGN-E354281+ (37085 37498) Alignment (genomic DNA sequence = upper lines): CCAACTGGAA CAACACCAAT TAGGTCTGAA CCAGATGTAC CAAGCAAGGG AACAATTGAG 37144 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAACTGGAA CAACACCAAT TAGGTCTGAA CCAGATGTAC CAAGCAAGGG AACAATTGAG 60 TCGTTGCGAG CCATGCCAAT GGAGACTCTA CTAGAGGAAT TTCGAGAGAA CAATTCATTG 37204 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGTTGCGAG CCATGCCAAT GGAGACTCTA CTAGAGGAAT TTCGAGAGAA CAATTCATTG 120 GAGTCCTTCC AAGTAAAGGA ACTAAAGCCA TCACTTATAC CACGATCTCC TCTCTCACTG 37264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCCTTCC AAGTAAAGGA ACTAAAGCCA TCACTTATAC CACGATCTCC TCTCTCACTG 180 ATTAACAATT AGCAGATTGG TCTCATCGTT CCCTCGTGCA TATGATCACT TAATCTGTAT 37324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAACAATT AGCAGATTGG TCTCATCGTT CCCTCGTGCA TATGATCACT TAATCTGTAT 240 CGGTATTTTC CTTGTATACT GAGTGAATAC TGCAAACTGC AGTATATATT GTAGGTTGAT 37384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTATTTTC CTTGTATACT GAGTGAATAC TGCAAACTGC AGTATATATT GTAGGTTGAT 300 TGGCACAGTC TTAAACAATA AATCCCACCT TGGGATTTAG AAAAATGGCT GTAAATGAGT 37444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCACAGTC TTAAACAATA AATCCCACCT TGGGATTTAG AAAAATGGCT GTAAATGAGT 360 AACTCTTGGT ACATTTATTT AGTAAAAGAT GGTGCTCTCT ATGTATTTGT GAAA 37498 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| AACTCTTGGT ACATTTATTT AGTAAAAGAT GGTGCTCTCT ATGTAAAAAA AAAA 414 hqPGS_C09HBa0168F14.1-2+_SGN-E354281+ (37085 37498) ******************************************************************************** EST sequence 37 +strand 631 n (File: SGN-E261244+) 1 CAACATCCAC TTCATTCATC TACTAATACT GGAAATTGGG AGTGTCCTGA TTTTTTCCCT 61 GTATTATTTA ATAGTACCAA TGGTTTAGAT GTATCGTATC GCGGAAAAAA TGTTAAATAT 121 GTCCTCAAGA ATAGTCTTGA TGTTGCTAGG TTTGATTATT ACACTATTGG CATGTATCAC 181 ACCAAAATAG ATAGGTATAT TCCGAATAAC AATTCAATTG ATGGTTGGAA GGGATTGAGA 241 ATCGACTATG GTAATTTCTA TGCATCGAAG ACATTCTATG ATCCTAGCAG AAATCGAAGG 301 GTTATTTGGG GTTGGTCAAA TGAATCCGAT GTATTACCTG ACGATGAAAT TAAGAAAGGA 361 TGGGCTGGAA TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA 421 CTTCAATGGC CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC 481 AAGAAGTTGA GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAGGCTGAT 541 GTTGAAGTGC TGTTCTCATT TTCAAGTTTG AACGAGGCCG AACAATTTGA TCCTAGATGG 601 GCTGACCTAT ATGCCCAAGA CGTTTGTGCC A Predicted gene structure (within gDNA segment 46013 to 48032): Exon 1 46613 47146 ( 534 n); cDNA 1 534 ( 534 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47422 ( 97 n); cDNA 535 631 ( 97 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E261244+ 1.000 631 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E261244+ (46613 47146,47326 47422) Alignment (genomic DNA sequence = upper lines): CAACATCCAC TTCATTCATC TACTAATACT GGAAATTGGG AGTGTCCTGA TTTTTTCCCT 46672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACATCCAC TTCATTCATC TACTAATACT GGAAATTGGG AGTGTCCTGA TTTTTTCCCT 60 GTATTATTTA ATAGTACCAA TGGTTTAGAT GTATCGTATC GCGGAAAAAA TGTTAAATAT 46732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTATTTA ATAGTACCAA TGGTTTAGAT GTATCGTATC GCGGAAAAAA TGTTAAATAT 120 GTCCTCAAGA ATAGTCTTGA TGTTGCTAGG TTTGATTATT ACACTATTGG CATGTATCAC 46792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCTCAAGA ATAGTCTTGA TGTTGCTAGG TTTGATTATT ACACTATTGG CATGTATCAC 180 ACCAAAATAG ATAGGTATAT TCCGAATAAC AATTCAATTG ATGGTTGGAA GGGATTGAGA 46852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAAATAG ATAGGTATAT TCCGAATAAC AATTCAATTG ATGGTTGGAA GGGATTGAGA 240 ATCGACTATG GTAATTTCTA TGCATCGAAG ACATTCTATG ATCCTAGCAG AAATCGAAGG 46912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGACTATG GTAATTTCTA TGCATCGAAG ACATTCTATG ATCCTAGCAG AAATCGAAGG 300 GTTATTTGGG GTTGGTCAAA TGAATCCGAT GTATTACCTG ACGATGAAAT TAAGAAAGGA 46972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATTTGGG GTTGGTCAAA TGAATCCGAT GTATTACCTG ACGATGAAAT TAAGAAAGGA 360 TGGGCTGGAA TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA 47032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCTGGAA TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA 420 CTTCAATGGC CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC 47092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATGGC CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC 480 AAGAAGTTGA GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAGGTTTCA 47152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGAAGTTGA GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAG...... 534 ACTTTTCCTT ATTAAACTAT AGTCTTTTAA ATATCATTAA TCTACTTCTT ATATGTATAA 47212 .......... .......... .......... .......... .......... .......... 534 TCAATGTATA ACTATTATAT CAAATGCACA TGATCGATTG ATTATACATT TGCTATATAT 47272 .......... .......... .......... .......... .......... .......... 534 ATATCTCTAT TATATCAATT GCACTGTCTC ATCTTGCATT TCTTTGATCG TAGGCTGATG 47332 ||||||| .......... .......... .......... .......... .......... ...GCTGATG 541 TTGAAGTGCT GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG 47392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAGTGCT GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG 601 CTGACCTATA TGCCCAAGAC GTTTGTGCCA 47422 |||||||||| |||||||||| |||||||||| CTGACCTATA TGCCCAAGAC GTTTGTGCCA 631 hqPGS_C09HBa0168F14.1-2+_SGN-E261244+ (46613 47146,47326 47422) ******************************************************************************** EST sequence 71 +strand 565 n (File: SGN-E235797+) 1 TAGTCTTGAT GTTGCTAGGT TTGATTATTA CACTATTGGC ATGTATCACA CCAAAATAGA 61 TAGGTATATT CCGAATAACA ATTCAATTGA TGGTTGGAAG GGATTGAGAA TCGACTATGG 121 TAATTTCTAT GCATCGAAGA CATTCTATGA TCCTAGCAGA AATCGAAGGG TTATTTGGGG 181 TTGGTCAAAT GAATCCGATG TATTACCTGA CGATGAAATT AAGAAAGGAT GGGCTGGAAT 241 TCAAGGTATT CCGCGACAAG TATGGCTAAA CCTTAGTGGT AAACAATTAC TTCAATGGCC 301 TATTGAAGAA TTAGAAACCC TAAGGAAGCA AAAGGTCCAA TTGAACAACA AGAAGTTGAG 361 CAAGGGAGAA ATGTTTGAAG TTAAAGGGAT CTCAGCATCA CAGGCTGATG TTGAAGTGCT 421 GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG CTGACCTATA 481 TGCCCAAGAC GTTTGTGCCA TTAAGGGTTC GACTATCCAA GGTGGGCTTG GACCATTTGG 541 GCTTGTGACA TTAGCTTCTA AAAAC Predicted gene structure (within gDNA segment 46144 to 48097): Exon 1 46744 47146 ( 403 n); cDNA 1 403 ( 403 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47487 ( 162 n); cDNA 404 565 ( 162 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E235797+ 1.000 565 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E235797+ (46744 47146,47326 47487) Alignment (genomic DNA sequence = upper lines): TAGTCTTGAT GTTGCTAGGT TTGATTATTA CACTATTGGC ATGTATCACA CCAAAATAGA 46803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTCTTGAT GTTGCTAGGT TTGATTATTA CACTATTGGC ATGTATCACA CCAAAATAGA 60 TAGGTATATT CCGAATAACA ATTCAATTGA TGGTTGGAAG GGATTGAGAA TCGACTATGG 46863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGTATATT CCGAATAACA ATTCAATTGA TGGTTGGAAG GGATTGAGAA TCGACTATGG 120 TAATTTCTAT GCATCGAAGA CATTCTATGA TCCTAGCAGA AATCGAAGGG TTATTTGGGG 46923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTTCTAT GCATCGAAGA CATTCTATGA TCCTAGCAGA AATCGAAGGG TTATTTGGGG 180 TTGGTCAAAT GAATCCGATG TATTACCTGA CGATGAAATT AAGAAAGGAT GGGCTGGAAT 46983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTCAAAT GAATCCGATG TATTACCTGA CGATGAAATT AAGAAAGGAT GGGCTGGAAT 240 TCAAGGTATT CCGCGACAAG TATGGCTAAA CCTTAGTGGT AAACAATTAC TTCAATGGCC 47043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGGTATT CCGCGACAAG TATGGCTAAA CCTTAGTGGT AAACAATTAC TTCAATGGCC 300 TATTGAAGAA TTAGAAACCC TAAGGAAGCA AAAGGTCCAA TTGAACAACA AGAAGTTGAG 47103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAAGAA TTAGAAACCC TAAGGAAGCA AAAGGTCCAA TTGAACAACA AGAAGTTGAG 360 CAAGGGAGAA ATGTTTGAAG TTAAAGGGAT CTCAGCATCA CAGGTTTCAA CTTTTCCTTA 47163 |||||||||| |||||||||| |||||||||| |||||||||| ||| CAAGGGAGAA ATGTTTGAAG TTAAAGGGAT CTCAGCATCA CAG....... .......... 403 TTAAACTATA GTCTTTTAAA TATCATTAAT CTACTTCTTA TATGTATAAT CAATGTATAA 47223 .......... .......... .......... .......... .......... .......... 403 CTATTATATC AAATGCACAT GATCGATTGA TTATACATTT GCTATATATA TATCTCTATT 47283 .......... .......... .......... .......... .......... .......... 403 ATATCAATTG CACTGTCTCA TCTTGCATTT CTTTGATCGT AGGCTGATGT TGAAGTGCTG 47343 |||||||| |||||||||| .......... .......... .......... .......... ..GCTGATGT TGAAGTGCTG 421 TTCTCATTTT CAAGTTTGAA CGAGGCCGAA CAATTTGATC CTAGATGGGC TGACCTATAT 47403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCATTTT CAAGTTTGAA CGAGGCCGAA CAATTTGATC CTAGATGGGC TGACCTATAT 481 GCCCAAGACG TTTGTGCCAT TAAGGGTTCG ACTATCCAAG GTGGGCTTGG ACCATTTGGG 47463 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAAGACG TTTGTGCCAT TAAGGGTTCG ACTATCCAAG GTGGGCTTGG ACCATTTGGG 541 CTTGTGACAT TAGCTTCTAA AAAC 47487 |||||||||| |||||||||| |||| CTTGTGACAT TAGCTTCTAA AAAC 565 hqPGS_C09HBa0168F14.1-2+_SGN-E235797+ (46744 47146,47326 47487) ******************************************************************************** EST sequence 83 +strand 658 n (File: SGN-E367950+) 1 TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA CTTCAATGGC 61 CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC AAGAAGTTGA 121 GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAGGCTGAT GTTGAAGTGC 181 TGTTCTCATT TTCAAGTTTG AACGAGGCCG AACAATTTGA TCCTAGATGG GCTGACCTAT 241 ATGCCCAAGA CGTTTGTGCC ATTAAGGGTT CGACTATCCA AGGTGGGCTT GGACCATTTG 301 GGCTTGTGAC ATTAGCTTCT AAAAACTTAG AAGAATACAC ACCTGTTTTC TTCCGAGTGT 361 TCAAGGCTCA AAAAAGTTAT AAGATTCTCA TGTGCTCAGA TGCTAGAAGA TCTTCCATGA 421 GACAAAATGA AGCAATGTAC AAGCCCTCAT TTGCTGGATA TGTAGATGTA GATTTAGAAG 481 ACATGAAGAA GTTATCTCTT AGGAGTTTGA TTGATAACTC AGTAGTGGAA AGTTTCGGTG 541 CTGGTGGCAA AACATGCATA ACATCAAGGG TGTATCCAAC TNTAGCGATT TATGATAATG 601 CACATTTATT TGTTTTTAAC AATGGCTCTG AGACAATCAC AATTGAGACT CTGAATGC Predicted gene structure (within gDNA segment 46383 to 48750): Exon 1 46983 47146 ( 164 n); cDNA 1 164 ( 164 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 165 409 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 47761 47860 ( 100 n); cDNA 410 509 ( 100 n); score: 1.000 Intron 3 47861 47991 ( 131 n); Pd: 0.985 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 47992 48140 ( 149 n); cDNA 510 658 ( 149 n); score: 0.993 MATCH C09HBa0168F14.1-2+ SGN-E367950+ 0.998 658 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E367950+ (46983 47146,47326 47570,47761 47860,47992 48140) Alignment (genomic DNA sequence = upper lines): TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA CTTCAATGGC 47042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA CTTCAATGGC 60 CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC AAGAAGTTGA 47102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC AAGAAGTTGA 120 GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAGGTTTCA ACTTTTCCTT 47162 |||||||||| |||||||||| |||||||||| |||||||||| |||| GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAG...... .......... 164 ATTAAACTAT AGTCTTTTAA ATATCATTAA TCTACTTCTT ATATGTATAA TCAATGTATA 47222 .......... .......... .......... .......... .......... .......... 164 ACTATTATAT CAAATGCACA TGATCGATTG ATTATACATT TGCTATATAT ATATCTCTAT 47282 .......... .......... .......... .......... .......... .......... 164 TATATCAATT GCACTGTCTC ATCTTGCATT TCTTTGATCG TAGGCTGATG TTGAAGTGCT 47342 ||||||| |||||||||| .......... .......... .......... .......... ...GCTGATG TTGAAGTGCT 181 GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG CTGACCTATA 47402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG CTGACCTATA 241 TGCCCAAGAC GTTTGTGCCA TTAAGGGTTC GACTATCCAA GGTGGGCTTG GACCATTTGG 47462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCCAAGAC GTTTGTGCCA TTAAGGGTTC GACTATCCAA GGTGGGCTTG GACCATTTGG 301 GCTTGTGACA TTAGCTTCTA AAAACTTAGA AGAATACACA CCTGTTTTCT TCCGAGTGTT 47522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGTGACA TTAGCTTCTA AAAACTTAGA AGAATACACA CCTGTTTTCT TCCGAGTGTT 361 CAAGGCTCAA AAAAGTTATA AGATTCTCAT GTGCTCAGAT GCTAGAAGGT TTGTTTCTTC 47582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAAGGCTCAA AAAAGTTATA AGATTCTCAT GTGCTCAGAT GCTAGAAG.. .......... 409 AATCCAATTA ATTGTAATGA TCGAAGTTCA CATCTTCTCC AAATTGAGTA AATCGAGAAT 47642 .......... .......... .......... .......... .......... .......... 409 TATAATGACC CGACTTTGAT ATCATGATAA GAAATGCATT TACTTATAGA TCGCCCGTTA 47702 .......... .......... .......... .......... .......... .......... 409 GTGTCATTAA AAAACTCTAA CCTTGTTTAG GTTTTTTTTT TTTTTAATTA ATGAGCAGAT 47762 || .......... .......... .......... .......... .......... ........AT 411 CTTCCATGAG ACAAAATGAA GCAATGTACA AGCCCTCATT TGCTGGATAT GTAGATGTAG 47822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCATGAG ACAAAATGAA GCAATGTACA AGCCCTCATT TGCTGGATAT GTAGATGTAG 471 ATTTAGAAGA CATGAAGAAG TTATCTCTTA GGAGTTTGGT AAGTTTTGCT TTCACAATTT 47882 |||||||||| |||||||||| |||||||||| |||||||| ATTTAGAAGA CATGAAGAAG TTATCTCTTA GGAGTTTG.. .......... .......... 509 TTATTTATTT ATAATTTATT TGATCAAAAC TTTCAAGATT CGATTAATTT GAAGAGTAAC 47942 .......... .......... .......... .......... .......... .......... 509 GATTTGTGTT TGACTAATCA ATTTGTATCA TATGCATATT TTTTTTTAGA TTGATAACTC 48002 | |||||||||| .......... .......... .......... .......... .........A TTGATAACTC 520 AGTAGTGGAA AGTTTCGGTG CTGGTGGCAA AACATGCATA ACATCAAGGG TGTATCCAAC 48062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAGTGGAA AGTTTCGGTG CTGGTGGCAA AACATGCATA ACATCAAGGG TGTATCCAAC 580 TTTAGCGATT TATGATAATG CACATTTATT TGTTTTTAAC AATGGCTCTG AGACAATCAC 48122 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TNTAGCGATT TATGATAATG CACATTTATT TGTTTTTAAC AATGGCTCTG AGACAATCAC 640 AATTGAGACT CTGAATGC 48140 |||||||||| |||||||| AATTGAGACT CTGAATGC 658 hqPGS_C09HBa0168F14.1-2+_SGN-E367950+ (46983 47146,47326 47570,47761 47860,47992 48140) ******************************************************************************** EST sequence 82 +strand 412 n (File: SGN-E237654+) 1 TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA CTTCAATGGC 61 CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC AAGAAGTTGA 121 GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAGGCTGAT GTTGAAGTGC 181 TGTTCTCATT TTCAAGTTTG AACGAGGCCG AACAATTTGA TCCTAGATGG GCTGACCTAT 241 ATGCCCAAGA CGTTTGTGCC ATTAAGGGTT CGACTATCCA AGGTGGGCTT GGACCATTTG 301 GGCTTGTGAC ATTAGCTTCT AAAAACTTAG AAGAATACAC ACCTGTTTTC TTCCGAGTGT 361 TCAAGGCTCA AAAAAGTTAT AAGATTCTCA TGTGCTCAGA TGCTAGAAGA TC Predicted gene structure (within gDNA segment 46383 to 48210): Exon 1 46983 47146 ( 164 n); cDNA 1 164 ( 164 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 165 409 ( 245 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E237654+ 1.000 409 0.993 C PGS_C09HBa0168F14.1-2+_SGN-E237654+ (46983 47146,47326 47570) Alignment (genomic DNA sequence = upper lines): TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA CTTCAATGGC 47042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGGTAT TCCGCGACAA GTATGGCTAA ACCTTAGTGG TAAACAATTA CTTCAATGGC 60 CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC AAGAAGTTGA 47102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTGAAGA ATTAGAAACC CTAAGGAAGC AAAAGGTCCA ATTGAACAAC AAGAAGTTGA 120 GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAGGTTTCA ACTTTTCCTT 47162 |||||||||| |||||||||| |||||||||| |||||||||| |||| GCAAGGGAGA AATGTTTGAA GTTAAAGGGA TCTCAGCATC ACAG...... .......... 164 ATTAAACTAT AGTCTTTTAA ATATCATTAA TCTACTTCTT ATATGTATAA TCAATGTATA 47222 .......... .......... .......... .......... .......... .......... 164 ACTATTATAT CAAATGCACA TGATCGATTG ATTATACATT TGCTATATAT ATATCTCTAT 47282 .......... .......... .......... .......... .......... .......... 164 TATATCAATT GCACTGTCTC ATCTTGCATT TCTTTGATCG TAGGCTGATG TTGAAGTGCT 47342 ||||||| |||||||||| .......... .......... .......... .......... ...GCTGATG TTGAAGTGCT 181 GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG CTGACCTATA 47402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTCATTT TCAAGTTTGA ACGAGGCCGA ACAATTTGAT CCTAGATGGG CTGACCTATA 241 TGCCCAAGAC GTTTGTGCCA TTAAGGGTTC GACTATCCAA GGTGGGCTTG GACCATTTGG 47462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCCAAGAC GTTTGTGCCA TTAAGGGTTC GACTATCCAA GGTGGGCTTG GACCATTTGG 301 GCTTGTGACA TTAGCTTCTA AAAACTTAGA AGAATACACA CCTGTTTTCT TCCGAGTGTT 47522 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGTGACA TTAGCTTCTA AAAACTTAGA AGAATACACA CCTGTTTTCT TCCGAGTGTT 361 CAAGGCTCAA AAAAGTTATA AGATTCTCAT GTGCTCAGAT GCTAGAAG 47570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAAGGCTCAA AAAAGTTATA AGATTCTCAT GTGCTCAGAT GCTAGAAG 409 hqPGS_C09HBa0168F14.1-2+_SGN-E237654+ (46983 47146,47326 47570) ******************************************************************************** EST sequence 43 +strand 659 n (File: SGN-E232957+) 1 GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 61 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 121 TTGAAGTTAA AGGGATCTCA GCATCACAGG CTGATGTTGA AGTGCTGTTC TCATTTTCAA 181 GTTTGAACGA GGCCGAACAA TTTGATCCTA GATGGGCTGA CCTATATGCC CAAGACGTTT 241 GTGCCATTAA GGGTTCGACT ATCCAAGGTG GGCTTGGACC ATTTGGGCTT GTGACATTAG 301 CTTCTAAAAA CTTAGAAGAA TACACACCTG TTTTCTTCCG AGTGTTCAAG GCTCAAAAAA 361 GTTATAAGAT TCTCATGTGC TCAGATGCTA GAAGATCTTC CATGAGACAA AATGAAGCAA 421 TGTACAAGCC CTCATTTGCT GGATATGTAG ATGTAGATTT AGAAGACATG AAGAAGTTAT 481 CTCTTAGGAG TTTGATTGAT AACTCAGTAG TGGAAAGTTT CGGTGCTGGT GGCAAAACAT 541 GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA TAATGCACAT TTATTTGTTT 601 TTAACAATGG CTCTGAGACA ATCACAATTG AGACTCTGAA TGCTTGGAGC ATGGATGCA Predicted gene structure (within gDNA segment 46398 to 48766): Exon 1 46998 47146 ( 149 n); cDNA 1 149 ( 149 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 150 394 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 47761 47860 ( 100 n); cDNA 395 494 ( 100 n); score: 1.000 Intron 3 47861 47991 ( 131 n); Pd: 0.985 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 47992 48153 ( 162 n); cDNA 495 656 ( 162 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E232957+ 1.000 656 0.995 C PGS_C09HBa0168F14.1-2+_SGN-E232957+ (46998 47146,47326 47570,47761 47860,47992 48153) Alignment (genomic DNA sequence = upper lines): GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 47057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 60 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 47117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 120 TTGAAGTTAA AGGGATCTCA GCATCACAGG TTTCAACTTT TCCTTATTAA ACTATAGTCT 47177 |||||||||| |||||||||| ||||||||| TTGAAGTTAA AGGGATCTCA GCATCACAG. .......... .......... .......... 149 TTTAAATATC ATTAATCTAC TTCTTATATG TATAATCAAT GTATAACTAT TATATCAAAT 47237 .......... .......... .......... .......... .......... .......... 149 GCACATGATC GATTGATTAT ACATTTGCTA TATATATATC TCTATTATAT CAATTGCACT 47297 .......... .......... .......... .......... .......... .......... 149 GTCTCATCTT GCATTTCTTT GATCGTAGGC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 47357 || |||||||||| |||||||||| |||||||||| .......... .......... ........GC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 181 TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 47417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 241 TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 47477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 301 TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 47537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 361 TTATAAGATT CTCATGTGCT CAGATGCTAG AAGGTTTGTT TCTTCAATCC AATTAATTGT 47597 |||||||||| |||||||||| |||||||||| ||| TTATAAGATT CTCATGTGCT CAGATGCTAG AAG....... .......... .......... 394 AATGATCGAA GTTCACATCT TCTCCAAATT GAGTAAATCG AGAATTATAA TGACCCGACT 47657 .......... .......... .......... .......... .......... .......... 394 TTGATATCAT GATAAGAAAT GCATTTACTT ATAGATCGCC CGTTAGTGTC ATTAAAAAAC 47717 .......... .......... .......... .......... .......... .......... 394 TCTAACCTTG TTTAGGTTTT TTTTTTTTTT AATTAATGAG CAGATCTTCC ATGAGACAAA 47777 ||||||| |||||||||| .......... .......... .......... .......... ...ATCTTCC ATGAGACAAA 411 ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA 47837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA 471 AGAAGTTATC TCTTAGGAGT TTGGTAAGTT TTGCTTTCAC AATTTTTATT TATTTATAAT 47897 |||||||||| |||||||||| ||| AGAAGTTATC TCTTAGGAGT TTG....... .......... .......... .......... 494 TTATTTGATC AAAACTTTCA AGATTCGATT AATTTGAAGA GTAACGATTT GTGTTTGACT 47957 .......... .......... .......... .......... .......... .......... 494 AATCAATTTG TATCATATGC ATATTTTTTT TTAGATTGAT AACTCAGTAG TGGAAAGTTT 48017 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATTGAT AACTCAGTAG TGGAAAGTTT 520 CGGTGCTGGT GGCAAAACAT GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA 48077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGCTGGT GGCAAAACAT GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA 580 TAATGCACAT TTATTTGTTT TTAACAATGG CTCTGAGACA ATCACAATTG AGACTCTGAA 48137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGCACAT TTATTTGTTT TTAACAATGG CTCTGAGACA ATCACAATTG AGACTCTGAA 640 TGCTTGGAGC ATGGAT 48153 |||||||||| |||||| TGCTTGGAGC ATGGAT 656 hqPGS_C09HBa0168F14.1-2+_SGN-E232957+ (46998 47146,47326 47570,47761 47860,47992 48153) ******************************************************************************** EST sequence 20 +strand 591 n (File: SGN-E240137+) 1 GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 61 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 121 TTGAAGTTAA AGGGATCTCA GCATCACAGG CTGATGTTGA AGTGCTGTTC TCATTTTCAA 181 GTTTGAACGA GGCCGAACAA TTTGATCCTA GATGGGCTGA CCTATATGCC CAAGACGTTT 241 GTGCCATTAA GGGTTCGACT ATCCAAGGTG GGCTTGGACC ATTTGGGCTT GTGACATTAG 301 CTTCTAAAAA CTTAGAAGAA TACACACCTG TTTTCTTCCG AGTGTTCAAG GCTCAAAAAA 361 GTTATAAGAT TCTCATGTGC TCAGATGCTA GAAGATCTTC CATGAGACAA AATGAAGCAA 421 TGTACAAGCC CTCATTTGCT GGATATGTAG ATGTAGATTT AGAAGACATG AAGAAGTTAT 481 CTCTTAGGAG TTTGATTGAT AACTCAGTAG TGGAAAGTTT CGGTGCTGGT GGCAAAACAT 541 GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA TAATGCACAT T Predicted gene structure (within gDNA segment 46398 to 48698): Exon 1 46998 47146 ( 149 n); cDNA 1 149 ( 149 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 150 394 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 47761 47860 ( 100 n); cDNA 395 494 ( 100 n); score: 1.000 Intron 3 47861 47991 ( 131 n); Pd: 0.985 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 47992 48088 ( 97 n); cDNA 495 591 ( 97 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E240137+ 1.000 591 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E240137+ (46998 47146,47326 47570,47761 47860,47992 48088) Alignment (genomic DNA sequence = upper lines): GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 47057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 60 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 47117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 120 TTGAAGTTAA AGGGATCTCA GCATCACAGG TTTCAACTTT TCCTTATTAA ACTATAGTCT 47177 |||||||||| |||||||||| ||||||||| TTGAAGTTAA AGGGATCTCA GCATCACAG. .......... .......... .......... 149 TTTAAATATC ATTAATCTAC TTCTTATATG TATAATCAAT GTATAACTAT TATATCAAAT 47237 .......... .......... .......... .......... .......... .......... 149 GCACATGATC GATTGATTAT ACATTTGCTA TATATATATC TCTATTATAT CAATTGCACT 47297 .......... .......... .......... .......... .......... .......... 149 GTCTCATCTT GCATTTCTTT GATCGTAGGC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 47357 || |||||||||| |||||||||| |||||||||| .......... .......... ........GC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 181 TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 47417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 241 TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 47477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 301 TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 47537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 361 TTATAAGATT CTCATGTGCT CAGATGCTAG AAGGTTTGTT TCTTCAATCC AATTAATTGT 47597 |||||||||| |||||||||| |||||||||| ||| TTATAAGATT CTCATGTGCT CAGATGCTAG AAG....... .......... .......... 394 AATGATCGAA GTTCACATCT TCTCCAAATT GAGTAAATCG AGAATTATAA TGACCCGACT 47657 .......... .......... .......... .......... .......... .......... 394 TTGATATCAT GATAAGAAAT GCATTTACTT ATAGATCGCC CGTTAGTGTC ATTAAAAAAC 47717 .......... .......... .......... .......... .......... .......... 394 TCTAACCTTG TTTAGGTTTT TTTTTTTTTT AATTAATGAG CAGATCTTCC ATGAGACAAA 47777 ||||||| |||||||||| .......... .......... .......... .......... ...ATCTTCC ATGAGACAAA 411 ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA 47837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA 471 AGAAGTTATC TCTTAGGAGT TTGGTAAGTT TTGCTTTCAC AATTTTTATT TATTTATAAT 47897 |||||||||| |||||||||| ||| AGAAGTTATC TCTTAGGAGT TTG....... .......... .......... .......... 494 TTATTTGATC AAAACTTTCA AGATTCGATT AATTTGAAGA GTAACGATTT GTGTTTGACT 47957 .......... .......... .......... .......... .......... .......... 494 AATCAATTTG TATCATATGC ATATTTTTTT TTAGATTGAT AACTCAGTAG TGGAAAGTTT 48017 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATTGAT AACTCAGTAG TGGAAAGTTT 520 CGGTGCTGGT GGCAAAACAT GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA 48077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGCTGGT GGCAAAACAT GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA 580 TAATGCACAT T 48088 |||||||||| | TAATGCACAT T 591 hqPGS_C09HBa0168F14.1-2+_SGN-E240137+ (46998 47146,47326 47570,47761 47860,47992 48088) ******************************************************************************** EST sequence 51 +strand 452 n (File: SGN-E232887+) 1 GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 61 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACATGAA GTTGAGCAAG GGAGAAATGT 121 TTGAAGTTAA AGGGATCTCA GCATCACAGG CTGATGTTGA AGTGCTGTTC TCATTTTCAA 181 GTTTGAACGA GGCCGAACAA TTTGATCCTA GATGGGCTGA CCTATATGCC CAAGACGTTT 241 GTGCCATTAA GGGTTCGACT ATCCAAGGTG GGCTTGGACC ATTTGGGCTT GTGACATTAG 301 CTTCTAAAAA CTTAGAAGAA TACACACCTG TTTTCTTCCG AGTGTTCAAG GCTCAAAAAA 361 GTTATAAGAT TCTCATGTGC TCAGATGCTA GAAGATCTTC CATGAGACAA AATGAAGCAA 421 TGTACAAGCC CTCATTTGCT GGATATGTAG AT Predicted gene structure (within gDNA segment 46398 to 48428): Exon 1 46998 47146 ( 149 n); cDNA 1 149 ( 149 n); score: 0.993 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 150 394 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 47761 47818 ( 58 n); cDNA 395 452 ( 58 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E232887+ 0.998 452 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E232887+ (46998 47146,47326 47570,47761 47818) Alignment (genomic DNA sequence = upper lines): GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 47057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAGTATG GCTAAACCTT AGTGGTAAAC AATTACTTCA ATGGCCTATT GAAGAATTAG 60 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 47117 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACATGAA GTTGAGCAAG GGAGAAATGT 120 TTGAAGTTAA AGGGATCTCA GCATCACAGG TTTCAACTTT TCCTTATTAA ACTATAGTCT 47177 |||||||||| |||||||||| ||||||||| TTGAAGTTAA AGGGATCTCA GCATCACAG. .......... .......... .......... 149 TTTAAATATC ATTAATCTAC TTCTTATATG TATAATCAAT GTATAACTAT TATATCAAAT 47237 .......... .......... .......... .......... .......... .......... 149 GCACATGATC GATTGATTAT ACATTTGCTA TATATATATC TCTATTATAT CAATTGCACT 47297 .......... .......... .......... .......... .......... .......... 149 GTCTCATCTT GCATTTCTTT GATCGTAGGC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 47357 || |||||||||| |||||||||| |||||||||| .......... .......... ........GC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 181 TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 47417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 241 TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 47477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 301 TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 47537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 361 TTATAAGATT CTCATGTGCT CAGATGCTAG AAGGTTTGTT TCTTCAATCC AATTAATTGT 47597 |||||||||| |||||||||| |||||||||| ||| TTATAAGATT CTCATGTGCT CAGATGCTAG AAG....... .......... .......... 394 AATGATCGAA GTTCACATCT TCTCCAAATT GAGTAAATCG AGAATTATAA TGACCCGACT 47657 .......... .......... .......... .......... .......... .......... 394 TTGATATCAT GATAAGAAAT GCATTTACTT ATAGATCGCC CGTTAGTGTC ATTAAAAAAC 47717 .......... .......... .......... .......... .......... .......... 394 TCTAACCTTG TTTAGGTTTT TTTTTTTTTT AATTAATGAG CAGATCTTCC ATGAGACAAA 47777 ||||||| |||||||||| .......... .......... .......... .......... ...ATCTTCC ATGAGACAAA 411 ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA T 47818 |||||||||| |||||||||| |||||||||| |||||||||| | ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA T 452 hqPGS_C09HBa0168F14.1-2+_SGN-E232887+ (46998 47146,47326 47570,47761 47818) ******************************************************************************** EST sequence 46 +strand 548 n (File: SGN-E323892+) 1 AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 61 TTGAAGTTAA AGGGATCTCA GCATCACAGG CTGATGTTGA AGTGCTGTTC TCATTTTCAA 121 GTTTGAACGA GGCCGAACAA TTTGATCCTA GATGGGCTGA CCTATATGCC CAAGACGTTT 181 GTGCCATTAA GGGTTCGACT ATCCAAGGTG GGCTTGGACC ATTTGGGCTT GTGACATTAG 241 CTTCTAAAAA CTTAGAAGAA TACACACCTG TTTTCTTCCG AGTGTTCAAG GCTCAAAAAA 301 GTTATAAGAT TCTCATGTGC TCAGATGCTA GAAGATCTTC CATGAGACAA AATGAAGCAA 361 TGTACAAGCC CTCATTTGCT GGATATGTAG ATGTAGATTT AGAAGACATG AAGAAGTTAT 421 CTCTTACGAG TTTGATTGAT AACTCAGTAG TGGAAAGTTT CGGTGCTGGT GGCAAAACAT 481 GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA TAATGCACAT TTATTTGTTT 541 TTAACAAT Predicted gene structure (within gDNA segment 46458 to 48715): Exon 1 47058 47146 ( 89 n); cDNA 1 89 ( 89 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 90 334 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 47761 47860 ( 100 n); cDNA 335 434 ( 100 n); score: 0.990 Intron 3 47861 47991 ( 131 n); Pd: 0.985 (s: 0.98), Pa: 0.986 (s: 1.00) Exon 4 47992 48105 ( 114 n); cDNA 435 548 ( 114 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E323892+ 0.998 548 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E323892+ (47058 47146,47326 47570,47761 47860,47992 48105) Alignment (genomic DNA sequence = upper lines): AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 47117 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCTAAG GAAGCAAAAG GTCCAATTGA ACAACAAGAA GTTGAGCAAG GGAGAAATGT 60 TTGAAGTTAA AGGGATCTCA GCATCACAGG TTTCAACTTT TCCTTATTAA ACTATAGTCT 47177 |||||||||| |||||||||| ||||||||| TTGAAGTTAA AGGGATCTCA GCATCACAG. .......... .......... .......... 89 TTTAAATATC ATTAATCTAC TTCTTATATG TATAATCAAT GTATAACTAT TATATCAAAT 47237 .......... .......... .......... .......... .......... .......... 89 GCACATGATC GATTGATTAT ACATTTGCTA TATATATATC TCTATTATAT CAATTGCACT 47297 .......... .......... .......... .......... .......... .......... 89 GTCTCATCTT GCATTTCTTT GATCGTAGGC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 47357 || |||||||||| |||||||||| |||||||||| .......... .......... ........GC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 121 TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 47417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 181 TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 47477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 241 TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 47537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 301 TTATAAGATT CTCATGTGCT CAGATGCTAG AAGGTTTGTT TCTTCAATCC AATTAATTGT 47597 |||||||||| |||||||||| |||||||||| ||| TTATAAGATT CTCATGTGCT CAGATGCTAG AAG....... .......... .......... 334 AATGATCGAA GTTCACATCT TCTCCAAATT GAGTAAATCG AGAATTATAA TGACCCGACT 47657 .......... .......... .......... .......... .......... .......... 334 TTGATATCAT GATAAGAAAT GCATTTACTT ATAGATCGCC CGTTAGTGTC ATTAAAAAAC 47717 .......... .......... .......... .......... .......... .......... 334 TCTAACCTTG TTTAGGTTTT TTTTTTTTTT AATTAATGAG CAGATCTTCC ATGAGACAAA 47777 ||||||| |||||||||| .......... .......... .......... .......... ...ATCTTCC ATGAGACAAA 351 ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA 47837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCAAT GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA 411 AGAAGTTATC TCTTAGGAGT TTGGTAAGTT TTGCTTTCAC AATTTTTATT TATTTATAAT 47897 |||||||||| ||||| |||| ||| AGAAGTTATC TCTTACGAGT TTG....... .......... .......... .......... 434 TTATTTGATC AAAACTTTCA AGATTCGATT AATTTGAAGA GTAACGATTT GTGTTTGACT 47957 .......... .......... .......... .......... .......... .......... 434 AATCAATTTG TATCATATGC ATATTTTTTT TTAGATTGAT AACTCAGTAG TGGAAAGTTT 48017 |||||| |||||||||| |||||||||| .......... .......... .......... ....ATTGAT AACTCAGTAG TGGAAAGTTT 460 CGGTGCTGGT GGCAAAACAT GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA 48077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGCTGGT GGCAAAACAT GCATAACATC AAGGGTGTAT CCAACTTTAG CGATTTATGA 520 TAATGCACAT TTATTTGTTT TTAACAAT 48105 |||||||||| |||||||||| |||||||| TAATGCACAT TTATTTGTTT TTAACAAT 548 hqPGS_C09HBa0168F14.1-2+_SGN-E323892+ (47058 47146,47326 47570,47761 47860,47992 48105) ******************************************************************************** EST sequence 3 +strand 541 n (File: SGN-E228259+) 1 AACCCTAAGG AAGCAAAAGG TCCAATTGAA CAACAAGAAG TTGAGCAAGG GAGAAATGTT 61 TGAAGTTAAA GGGATCTCAG CATCACAGGC TGATGTTGAA GTGCTGTTCT CATTTTCAAG 121 TTTGAACGAG GCCGAACAAT TTGATCCTAG ATGGGCTGAC CTATATGCCC AAGACGTTTG 181 TGCCATTAAG GGTTCGACTA TCCAAGGTGG GCTTGGACCA TTTGGGCTTG TGACATTAGC 241 TTCTAAAAAC TTAGAAGAAT ACACACCTGT TTTCTTCCGA GTGTTCAAGG CTCAAAAAAG 301 TTATAAGATT CTCATGTGCT CAGATGCTAG AAGATCTTCC ATGAGACAAA ATGAAGCAAT 361 GTACAAGCCC TCATTTGCTG GATATGTAGA TGTAGATTTA GAAGACATGA AGAAGTTATC 421 TCTTAGGAGT TTGATTGATA ACTCAGTAGT GGAAAGTTTC GGTGCTGGTG GCAAAACATG 481 CATAACATCA AGGGTGTATC CAACTTTAGC GATTTATGAT AATGCACATT TATTTGTTTT 541 T Predicted gene structure (within gDNA segment 46459 to 48709): Exon 1 47059 47146 ( 88 n); cDNA 1 88 ( 88 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 47326 47570 ( 245 n); cDNA 89 333 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 47761 47860 ( 100 n); cDNA 334 433 ( 100 n); score: 1.000 Intron 3 47861 47991 ( 131 n); Pd: 0.985 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 4 47992 48099 ( 108 n); cDNA 434 541 ( 108 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E228259+ 1.000 541 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E228259+ (47059 47146,47326 47570,47761 47860,47992 48099) Alignment (genomic DNA sequence = upper lines): AACCCTAAGG AAGCAAAAGG TCCAATTGAA CAACAAGAAG TTGAGCAAGG GAGAAATGTT 47118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCCTAAGG AAGCAAAAGG TCCAATTGAA CAACAAGAAG TTGAGCAAGG GAGAAATGTT 60 TGAAGTTAAA GGGATCTCAG CATCACAGGT TTCAACTTTT CCTTATTAAA CTATAGTCTT 47178 |||||||||| |||||||||| |||||||| TGAAGTTAAA GGGATCTCAG CATCACAG.. .......... .......... .......... 88 TTAAATATCA TTAATCTACT TCTTATATGT ATAATCAATG TATAACTATT ATATCAAATG 47238 .......... .......... .......... .......... .......... .......... 88 CACATGATCG ATTGATTATA CATTTGCTAT ATATATATCT CTATTATATC AATTGCACTG 47298 .......... .......... .......... .......... .......... .......... 88 TCTCATCTTG CATTTCTTTG ATCGTAGGCT GATGTTGAAG TGCTGTTCTC ATTTTCAAGT 47358 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GCT GATGTTGAAG TGCTGTTCTC ATTTTCAAGT 121 TTGAACGAGG CCGAACAATT TGATCCTAGA TGGGCTGACC TATATGCCCA AGACGTTTGT 47418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACGAGG CCGAACAATT TGATCCTAGA TGGGCTGACC TATATGCCCA AGACGTTTGT 181 GCCATTAAGG GTTCGACTAT CCAAGGTGGG CTTGGACCAT TTGGGCTTGT GACATTAGCT 47478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTAAGG GTTCGACTAT CCAAGGTGGG CTTGGACCAT TTGGGCTTGT GACATTAGCT 241 TCTAAAAACT TAGAAGAATA CACACCTGTT TTCTTCCGAG TGTTCAAGGC TCAAAAAAGT 47538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAAAAACT TAGAAGAATA CACACCTGTT TTCTTCCGAG TGTTCAAGGC TCAAAAAAGT 301 TATAAGATTC TCATGTGCTC AGATGCTAGA AGGTTTGTTT CTTCAATCCA ATTAATTGTA 47598 |||||||||| |||||||||| |||||||||| || TATAAGATTC TCATGTGCTC AGATGCTAGA AG........ .......... .......... 333 ATGATCGAAG TTCACATCTT CTCCAAATTG AGTAAATCGA GAATTATAAT GACCCGACTT 47658 .......... .......... .......... .......... .......... .......... 333 TGATATCATG ATAAGAAATG CATTTACTTA TAGATCGCCC GTTAGTGTCA TTAAAAAACT 47718 .......... .......... .......... .......... .......... .......... 333 CTAACCTTGT TTAGGTTTTT TTTTTTTTTA ATTAATGAGC AGATCTTCCA TGAGACAAAA 47778 |||||||| |||||||||| .......... .......... .......... .......... ..ATCTTCCA TGAGACAAAA 351 TGAAGCAATG TACAAGCCCT CATTTGCTGG ATATGTAGAT GTAGATTTAG AAGACATGAA 47838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCAATG TACAAGCCCT CATTTGCTGG ATATGTAGAT GTAGATTTAG AAGACATGAA 411 GAAGTTATCT CTTAGGAGTT TGGTAAGTTT TGCTTTCACA ATTTTTATTT ATTTATAATT 47898 |||||||||| |||||||||| || GAAGTTATCT CTTAGGAGTT TG........ .......... .......... .......... 433 TATTTGATCA AAACTTTCAA GATTCGATTA ATTTGAAGAG TAACGATTTG TGTTTGACTA 47958 .......... .......... .......... .......... .......... .......... 433 ATCAATTTGT ATCATATGCA TATTTTTTTT TAGATTGATA ACTCAGTAGT GGAAAGTTTC 48018 ||||||| |||||||||| |||||||||| .......... .......... .......... ...ATTGATA ACTCAGTAGT GGAAAGTTTC 460 GGTGCTGGTG GCAAAACATG CATAACATCA AGGGTGTATC CAACTTTAGC GATTTATGAT 48078 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCTGGTG GCAAAACATG CATAACATCA AGGGTGTATC CAACTTTAGC GATTTATGAT 520 AATGCACATT TATTTGTTTT T 48099 |||||||||| |||||||||| | AATGCACATT TATTTGTTTT T 541 hqPGS_C09HBa0168F14.1-2+_SGN-E228259+ (47059 47146,47326 47570,47761 47860,47992 48099) ******************************************************************************** EST sequence 95 +strand 471 n (File: SGN-E240648+) 1 TGATCGTCCC TGATAACAGT ATCAATAGAA CTGAGTTTCG CGATCCAACT ACAGCTTGGA 61 TGGGCCAAGA TGGGCTTTGG AGGATTTTAA TAGCAAGTAT GAGAAAACAT AGAGGGATGG 121 CATTGTTGTA TAGAAGTAGA GATTTTATGA AATGGATCAA AGCCCAACAT CCACTTCATT 181 CATCTACTAA TACTGGAAAT TGGGAGTGTG CTGATTTTTT CCCTGTATTA TTTAATAGTA 241 CCAATGGTTT AGATGTATCG TATCGCGGAA AAAATGTTAA ATATGTCCTC AAGAATAGTC 301 TTGATGTTGC TAGGTTTGAT TATTACACTA TTGGCATGTA TCACACCAAA ATAGATAGGT 361 ATATTCCGAA TAACAATTCA ATTGATGGTT GGAAGGGATT GAGAATCGAC TATGGTAATT 421 TCTATGCATC GAAGACATTC TATGATCCTA GCAGAAATCG AAGGGTTATT T Predicted gene structure (within gDNA segment 45849 to 47529): Exon 1 46449 46919 ( 471 n); cDNA 1 471 ( 471 n); score: 0.998 MATCH C09HBa0168F14.1-2+ SGN-E240648+ 0.998 471 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E240648+ (46449 46919) Alignment (genomic DNA sequence = upper lines): TGATCGTCCC TGATAACAGT ATCAATAGAA CTGAGTTTCG CGATCCAACT ACAGCTTGGA 46508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCGTCCC TGATAACAGT ATCAATAGAA CTGAGTTTCG CGATCCAACT ACAGCTTGGA 60 TGGGCCAAGA TGGGCTTTGG AGGATTTTAA TAGCAAGTAT GAGAAAACAT AGAGGGATGG 46568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCCAAGA TGGGCTTTGG AGGATTTTAA TAGCAAGTAT GAGAAAACAT AGAGGGATGG 120 CATTGTTGTA TAGAAGTAGA GATTTTATGA AATGGATCAA AGCCCAACAT CCACTTCATT 46628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTGTA TAGAAGTAGA GATTTTATGA AATGGATCAA AGCCCAACAT CCACTTCATT 180 CATCTACTAA TACTGGAAAT TGGGAGTGTC CTGATTTTTT CCCTGTATTA TTTAATAGTA 46688 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CATCTACTAA TACTGGAAAT TGGGAGTGTG CTGATTTTTT CCCTGTATTA TTTAATAGTA 240 CCAATGGTTT AGATGTATCG TATCGCGGAA AAAATGTTAA ATATGTCCTC AAGAATAGTC 46748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATGGTTT AGATGTATCG TATCGCGGAA AAAATGTTAA ATATGTCCTC AAGAATAGTC 300 TTGATGTTGC TAGGTTTGAT TATTACACTA TTGGCATGTA TCACACCAAA ATAGATAGGT 46808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTTGC TAGGTTTGAT TATTACACTA TTGGCATGTA TCACACCAAA ATAGATAGGT 360 ATATTCCGAA TAACAATTCA ATTGATGGTT GGAAGGGATT GAGAATCGAC TATGGTAATT 46868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCCGAA TAACAATTCA ATTGATGGTT GGAAGGGATT GAGAATCGAC TATGGTAATT 420 TCTATGCATC GAAGACATTC TATGATCCTA GCAGAAATCG AAGGGTTATT T 46919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TCTATGCATC GAAGACATTC TATGATCCTA GCAGAAATCG AAGGGTTATT T 471 hqPGS_C09HBa0168F14.1-2+_SGN-E240648+ (46449 46919) ******************************************************************************** EST sequence 102 +strand 412 n (File: SGN-E239600+) 1 TGATCGTCCC TGATAACAGT ATCAATAGAA CTGAGTTTCG CGATCCAACT ACAGCTTGGA 61 TGGGCCAAGA TGGGCTTTGG AGGATTTTAA TAGCAAGTAT GAGAAAACAT AGAGGGATGG 121 CATTGTTGTA TAGAAGTAGA GATTTTATGA AATGGATCAA AGCCCAACAT CCACTTCATT 181 CATCTACTAA TACTGGAAAT TGGGAGTGTC CTGATTTTTT CCCTGTATTA TTTAATAGTA 241 CCAATGGTTT AGATGTATCG TATCGCGGAA AAAATGTTAA ATATGTCCTC AAGAATAGTC 301 TTGATGTTGC TAGGTTTGAT TATTACACTA TTGGCATGTA TCACACCAAA ATAGATAGGT 361 ATATTCCGAA TAACAATTCA ATTGATGGTT GGAAGGGATT GAGAATCGAC TA Predicted gene structure (within gDNA segment 45849 to 47470): Exon 1 46449 46860 ( 412 n); cDNA 1 412 ( 412 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E239600+ 1.000 412 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E239600+ (46449 46860) Alignment (genomic DNA sequence = upper lines): TGATCGTCCC TGATAACAGT ATCAATAGAA CTGAGTTTCG CGATCCAACT ACAGCTTGGA 46508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCGTCCC TGATAACAGT ATCAATAGAA CTGAGTTTCG CGATCCAACT ACAGCTTGGA 60 TGGGCCAAGA TGGGCTTTGG AGGATTTTAA TAGCAAGTAT GAGAAAACAT AGAGGGATGG 46568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCCAAGA TGGGCTTTGG AGGATTTTAA TAGCAAGTAT GAGAAAACAT AGAGGGATGG 120 CATTGTTGTA TAGAAGTAGA GATTTTATGA AATGGATCAA AGCCCAACAT CCACTTCATT 46628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTGTA TAGAAGTAGA GATTTTATGA AATGGATCAA AGCCCAACAT CCACTTCATT 180 CATCTACTAA TACTGGAAAT TGGGAGTGTC CTGATTTTTT CCCTGTATTA TTTAATAGTA 46688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTACTAA TACTGGAAAT TGGGAGTGTC CTGATTTTTT CCCTGTATTA TTTAATAGTA 240 CCAATGGTTT AGATGTATCG TATCGCGGAA AAAATGTTAA ATATGTCCTC AAGAATAGTC 46748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATGGTTT AGATGTATCG TATCGCGGAA AAAATGTTAA ATATGTCCTC AAGAATAGTC 300 TTGATGTTGC TAGGTTTGAT TATTACACTA TTGGCATGTA TCACACCAAA ATAGATAGGT 46808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTTGC TAGGTTTGAT TATTACACTA TTGGCATGTA TCACACCAAA ATAGATAGGT 360 ATATTCCGAA TAACAATTCA ATTGATGGTT GGAAGGGATT GAGAATCGAC TA 46860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ATATTCCGAA TAACAATTCA ATTGATGGTT GGAAGGGATT GAGAATCGAC TA 412 hqPGS_C09HBa0168F14.1-2+_SGN-E239600+ (46449 46860) ******************************************************************************** EST sequence 89 +strand 377 n (File: SGN-E240518+) 1 TAGAACTGAG TTTCGCGATC CAACTACAGC TTGGATGGGC CAAGATGGGC TTTGGAGGAT 61 TTTAATAGCA AGTATGAGAA AACATAGAGG GATGGCATTG TTGTATAGAA GTAGAGATTT 121 TATGAAATGG ATCAAAGCCC AACATCCACT TCATTCATCT ACTAATACTG GAAATTGGGA 181 GTGTCCTGAT TTTTTCCCTG TATTATTTAA TAGTACCAAA TGGTTTAGAT GTATCGTATC 241 GCGGAAAAAA TGTTAAATAT GTCCTCAAGA ATAGTCTTGA TGTTGCTAGG CTTGATTATT 301 ACACTATTGG CATGTATCAC ACCAAAATAG ATAGGTATAT TCCGAATAAC AATTCAATTG 361 ATGGTTGGAA GGGATTG Predicted gene structure (within gDNA segment 45874 to 47459): Exon 1 46474 46849 ( 376 n); cDNA 1 377 ( 377 n); score: 0.991 MATCH C09HBa0168F14.1-2+ SGN-E240518+ 0.991 376 0.997 C PGS_C09HBa0168F14.1-2+_SGN-E240518+ (46474 46849) Alignment (genomic DNA sequence = upper lines): TAGAACTGAG TTTCGCGATC CAACTACAGC TTGGATGGGC CAAGATGGGC TTTGGAGGAT 46533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAACTGAG TTTCGCGATC CAACTACAGC TTGGATGGGC CAAGATGGGC TTTGGAGGAT 60 TTTAATAGCA AGTATGAGAA AACATAGAGG GATGGCATTG TTGTATAGAA GTAGAGATTT 46593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAATAGCA AGTATGAGAA AACATAGAGG GATGGCATTG TTGTATAGAA GTAGAGATTT 120 TATGAAATGG ATCAAAGCCC AACATCCACT TCATTCATCT ACTAATACTG GAAATTGGGA 46653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAATGG ATCAAAGCCC AACATCCACT TCATTCATCT ACTAATACTG GAAATTGGGA 180 GTGTCCTGAT TTTTTCCCTG TATTATTTAA TAGTACC-AA TGGTTTAGAT GTATCGTATC 46712 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| GTGTCCTGAT TTTTTCCCTG TATTATTTAA TAGTACCAAA TGGTTTAGAT GTATCGTATC 240 GCGGAAAAAA TGTTAAATAT GTCCTCAAGA ATAGTCTTGA TGTTGCTAGG TTTGATTATT 46772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCGGAAAAAA TGTTAAATAT GTCCTCAAGA ATAGTCTTGA TGTTGCTAGG CTTGATTATT 300 ACACTATTGG CATGTATCAC ACCAAAATAG ATAGGTATAT TCCGAATAAC AATTCAATTG 46832 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTATTGG CATGTATCAC ACCAAAATAG ATAGGTATAT TCCGAATAAC AATTCAATTG 360 ATGGTTGGAA GGGATTG 46849 |||||||||| ||||||| ATGGTTGGAA GGGATTG 377 hqPGS_C09HBa0168F14.1-2+_SGN-E240518+ (46474 46849) ******************************************************************************** EST sequence 42 +strand 563 n (File: SGN-E231264+) 1 TGACCTATAT GCCCAAGACG TTTGTGCCAT TAAGGGTTCG ACTATCCAAG GTGGGCTTGG 61 ACCATTTGGG CTTGTGACAT TAGCTTCTAA AAACTTAGAA GAATACACAC CTGTTTTCTT 121 CCGAGTGTTC AAGGCTCAAA AAAGTTATAA GATTCTCATG TGCTCAGATG CTAGAAGATC 181 TTCCATGAGA CAAAATGAAG CAATGTACAA GCCCTCATTT GCTGGATATG TAGATGTAGA 241 TTTAGAAGAC ATGAAGAAGT TATCTCTTAG GAGTTTGATT GATAACTCAG TAGTGGAAAG 301 TTTCGGTGCT GGTGGCAAAA CATGCATAAC ATCAAGGGTG TATCCAACTT TAGCGATTTA 361 TGATAATGCA CATTTATTTG TTTTTAACAA TGGCTCTGAG ACAATCACAA TTGAGACTCT 421 GAATGCTTGG AGCATGGATG CATGTAAGAT GAACTAAATA TTTTCAAAAA AATTGGAATT 481 ATGTCTACAA TTATATATGT CTAAAGAGAC AAAAATTGTG TTAAATTTAA CAGTAGATGA 541 TGTTCACAAA AATCCTCTAT AAT Predicted gene structure (within gDNA segment 46794 to 48887): Exon 1 47394 47570 ( 177 n); cDNA 1 177 ( 177 n); score: 1.000 Intron 1 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 2 47761 47860 ( 100 n); cDNA 178 277 ( 100 n); score: 1.000 Intron 2 47861 47991 ( 131 n); Pd: 0.985 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 3 47992 48277 ( 286 n); cDNA 278 563 ( 286 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E231264+ 1.000 563 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E231264+ (47394 47570,47761 47860,47992 48277) Alignment (genomic DNA sequence = upper lines): TGACCTATAT GCCCAAGACG TTTGTGCCAT TAAGGGTTCG ACTATCCAAG GTGGGCTTGG 47453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCTATAT GCCCAAGACG TTTGTGCCAT TAAGGGTTCG ACTATCCAAG GTGGGCTTGG 60 ACCATTTGGG CTTGTGACAT TAGCTTCTAA AAACTTAGAA GAATACACAC CTGTTTTCTT 47513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCATTTGGG CTTGTGACAT TAGCTTCTAA AAACTTAGAA GAATACACAC CTGTTTTCTT 120 CCGAGTGTTC AAGGCTCAAA AAAGTTATAA GATTCTCATG TGCTCAGATG CTAGAAGGTT 47573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CCGAGTGTTC AAGGCTCAAA AAAGTTATAA GATTCTCATG TGCTCAGATG CTAGAAG... 177 TGTTTCTTCA ATCCAATTAA TTGTAATGAT CGAAGTTCAC ATCTTCTCCA AATTGAGTAA 47633 .......... .......... .......... .......... .......... .......... 177 ATCGAGAATT ATAATGACCC GACTTTGATA TCATGATAAG AAATGCATTT ACTTATAGAT 47693 .......... .......... .......... .......... .......... .......... 177 CGCCCGTTAG TGTCATTAAA AAACTCTAAC CTTGTTTAGG TTTTTTTTTT TTTTAATTAA 47753 .......... .......... .......... .......... .......... .......... 177 TGAGCAGATC TTCCATGAGA CAAAATGAAG CAATGTACAA GCCCTCATTT GCTGGATATG 47813 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......ATC TTCCATGAGA CAAAATGAAG CAATGTACAA GCCCTCATTT GCTGGATATG 230 TAGATGTAGA TTTAGAAGAC ATGAAGAAGT TATCTCTTAG GAGTTTGGTA AGTTTTGCTT 47873 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAGATGTAGA TTTAGAAGAC ATGAAGAAGT TATCTCTTAG GAGTTTG... .......... 277 TCACAATTTT TATTTATTTA TAATTTATTT GATCAAAACT TTCAAGATTC GATTAATTTG 47933 .......... .......... .......... .......... .......... .......... 277 AAGAGTAACG ATTTGTGTTT GACTAATCAA TTTGTATCAT ATGCATATTT TTTTTTAGAT 47993 || .......... .......... .......... .......... .......... ........AT 279 TGATAACTCA GTAGTGGAAA GTTTCGGTGC TGGTGGCAAA ACATGCATAA CATCAAGGGT 48053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATAACTCA GTAGTGGAAA GTTTCGGTGC TGGTGGCAAA ACATGCATAA CATCAAGGGT 339 GTATCCAACT TTAGCGATTT ATGATAATGC ACATTTATTT GTTTTTAACA ATGGCTCTGA 48113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCCAACT TTAGCGATTT ATGATAATGC ACATTTATTT GTTTTTAACA ATGGCTCTGA 399 GACAATCACA ATTGAGACTC TGAATGCTTG GAGCATGGAT GCATGTAAGA TGAACTAAAT 48173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATCACA ATTGAGACTC TGAATGCTTG GAGCATGGAT GCATGTAAGA TGAACTAAAT 459 ATTTTCAAAA AAATTGGAAT TATGTCTACA ATTATATATG TCTAAAGAGA CAAAAATTGT 48233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTCAAAA AAATTGGAAT TATGTCTACA ATTATATATG TCTAAAGAGA CAAAAATTGT 519 GTTAAATTTA ACAGTAGATG ATGTTCACAA AAATCCTCTA TAAT 48277 |||||||||| |||||||||| |||||||||| |||||||||| |||| GTTAAATTTA ACAGTAGATG ATGTTCACAA AAATCCTCTA TAAT 563 hqPGS_C09HBa0168F14.1-2+_SGN-E231264+ (47394 47570,47761 47860,47992 48277) ******************************************************************************** EST sequence 40 +strand 484 n (File: SGN-E553013+) 1 AAGGGTTCGA CTATCCAAGG TGGGCTTGGA CCATTTGGGC TTGTGACATT AGCTTCTAAA 61 AACTTAGAAG AATACACACC TGGTTTTCTT CCGAGTGTTC AAGGCTCAAA AAAGTTATAA 121 GATTCTCATG TGCTCAGATG CTAGAAGATC TTCCATGAGA CAAAATGAAG CAATGTACAA 181 GCCCTCATTT GCTGGATATG TAGATGTAGA TTTAGAAGAC ATGAAGAAGT TATCTCTTAG 241 GAGTTTGATT GATAACTCAG TAGTGGAAAG TTTCGGTGCT GGTGGCAAAA CATGCATAAC 301 ATCAAGGGTG TATCCAACTT TAGCGATTTA TGATAATGCA CATTTATTTG TTTTTAACAA 361 TGGCTCTGAG ACAATCACAA TTGAGACTCT GAATGCTTGG AGCATGGATG CATGTAAGAT 421 GAACTAAATA TTTTCAAAAA AATTGGAATT ATGTCTACNA AAAAAAAAAA AAAAAAAAAA 481 AAAA Predicted gene structure (within gDNA segment 46825 to 49072): Exon 1 47425 47570 ( 146 n); cDNA 1 147 ( 147 n); score: 0.983 Intron 1 47571 47760 ( 190 n); Pd: 0.977 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 2 47761 47860 ( 100 n); cDNA 148 247 ( 100 n); score: 1.000 Intron 2 47861 47991 ( 131 n); Pd: 0.985 (s: 1.00), Pa: 0.986 (s: 1.00) Exon 3 47992 48228 ( 237 n); cDNA 248 484 ( 237 n); score: 0.945 MATCH C09HBa0168F14.1-2+ SGN-E553013+ 0.968 483 0.998 C PGS_C09HBa0168F14.1-2+_SGN-E553013+ (47425 47570,47761 47860,47992 48228) Alignment (genomic DNA sequence = upper lines): AAGGGTTCGA CTATCCAAGG TGGGCTTGGA CCATTTGGGC TTGTGACATT AGCTTCTAAA 47484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGTTCGA CTATCCAAGG TGGGCTTGGA CCATTTGGGC TTGTGACATT AGCTTCTAAA 60 AACTTAGAAG AATACACACC T-GTTTTCTT CCGAGTGTTC AAGGCTCAAA AAAGTTATAA 47543 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| AACTTAGAAG AATACACACC TGGTTTTCTT CCGAGTGTTC AAGGCTCAAA AAAGTTATAA 120 GATTCTCATG TGCTCAGATG CTAGAAGGTT TGTTTCTTCA ATCCAATTAA TTGTAATGAT 47603 |||||||||| |||||||||| ||||||| GATTCTCATG TGCTCAGATG CTAGAAG... .......... .......... .......... 147 CGAAGTTCAC ATCTTCTCCA AATTGAGTAA ATCGAGAATT ATAATGACCC GACTTTGATA 47663 .......... .......... .......... .......... .......... .......... 147 TCATGATAAG AAATGCATTT ACTTATAGAT CGCCCGTTAG TGTCATTAAA AAACTCTAAC 47723 .......... .......... .......... .......... .......... .......... 147 CTTGTTTAGG TTTTTTTTTT TTTTAATTAA TGAGCAGATC TTCCATGAGA CAAAATGAAG 47783 ||| |||||||||| |||||||||| .......... .......... .......... .......ATC TTCCATGAGA CAAAATGAAG 170 CAATGTACAA GCCCTCATTT GCTGGATATG TAGATGTAGA TTTAGAAGAC ATGAAGAAGT 47843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGTACAA GCCCTCATTT GCTGGATATG TAGATGTAGA TTTAGAAGAC ATGAAGAAGT 230 TATCTCTTAG GAGTTTGGTA AGTTTTGCTT TCACAATTTT TATTTATTTA TAATTTATTT 47903 |||||||||| ||||||| TATCTCTTAG GAGTTTG... .......... .......... .......... .......... 247 GATCAAAACT TTCAAGATTC GATTAATTTG AAGAGTAACG ATTTGTGTTT GACTAATCAA 47963 .......... .......... .......... .......... .......... .......... 247 TTTGTATCAT ATGCATATTT TTTTTTAGAT TGATAACTCA GTAGTGGAAA GTTTCGGTGC 48023 || |||||||||| |||||||||| |||||||||| .......... .......... ........AT TGATAACTCA GTAGTGGAAA GTTTCGGTGC 279 TGGTGGCAAA ACATGCATAA CATCAAGGGT GTATCCAACT TTAGCGATTT ATGATAATGC 48083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGCAAA ACATGCATAA CATCAAGGGT GTATCCAACT TTAGCGATTT ATGATAATGC 339 ACATTTATTT GTTTTTAACA ATGGCTCTGA GACAATCACA ATTGAGACTC TGAATGCTTG 48143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTATTT GTTTTTAACA ATGGCTCTGA GACAATCACA ATTGAGACTC TGAATGCTTG 399 GAGCATGGAT GCATGTAAGA TGAACTAAAT ATTTTCAAAA AAATTGGAAT TATGTCTACA 48203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAGCATGGAT GCATGTAAGA TGAACTAAAT ATTTTCAAAA AAATTGGAAT TATGTCTACN 459 ATTATATATG TCTAAAGAGA CAAAA 48228 | | | | ||| | | |||| AAAAAAAAAA AAAAAAAAAA AAAAA 484 hqPGS_C09HBa0168F14.1-2+_SGN-E553013+ (47425 47570,47761 47860,47992 48228) ******************************************************************************** EST sequence 221 -strand 601 n (File: SGN-E367949-) 1 AATGTACAAG CCCTCATTTG CTGGATATGT AGATGTAGAT TTAGAAGACA TGAAAAAGTT 61 ATCTCTTAGG AGTTTGATTG ATAACTCAGT AGTGGAAAGT TTCGGTGCTG GTGGCAAAAC 121 ATGCATAACA TCAAGGGTGT ATCCAACTTT AGCGATTTAT GATAATGCAC ATTTATTTGT 181 TTTTAACAAT GGCTTTTAGA CAATCACAAT TGAGACTCTG AATGCTTGGA GCATGGATGC 241 ATGTAAAATG AACTAAATAT TTTCAAAAAA ATTGGAATTA TGTCTACAAT TATATATGTT 301 TAAAAAAACA AAAATTGTGT TAAATTTAAC AGTAAATGAT GTTCACAAAA ATCCTCTATA 361 ATTGTCTCTA ATTTATTTTG GTGAATTTAG AAGGCAAAGT GTGTGTATGG ATTTTTCTAG 421 TACCATATAT ATATATATTA AGTAAGAAAT TTGTTAGCTT TCCTTTTTGT TTTGTAACAT 481 AATCAAATGT GTGGTTTTAT GTAGAACTAA TATTTGGTAA TATTAGGCAA GTTGTTATGT 541 GACTTATTTT ATTCAAAAAT ATAATAAAAA GTTCAAAAAA AAAAAAAAAA AAAAAAAAAA 601 A Predicted gene structure (within gDNA segment 47175 to 49422): Exon 1 47785 47860 ( 76 n); cDNA 1 76 ( 76 n); score: 0.987 Intron 1 47861 47991 ( 131 n); Pd: 0.985 (s: 0.98), Pa: 0.986 (s: 1.00) Exon 2 47992 48513 ( 522 n); cDNA 77 598 ( 522 n); score: 0.964 MATCH C09HBa0168F14.1-2+ SGN-E367949- 0.967 598 0.995 C PGS_C09HBa0168F14.1-2+_SGN-E367949- (47785 47860,47992 48513) Alignment (genomic DNA sequence = upper lines): AATGTACAAG CCCTCATTTG CTGGATATGT AGATGTAGAT TTAGAAGACA TGAAGAAGTT 47844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| AATGTACAAG CCCTCATTTG CTGGATATGT AGATGTAGAT TTAGAAGACA TGAAAAAGTT 60 ATCTCTTAGG AGTTTGGTAA GTTTTGCTTT CACAATTTTT ATTTATTTAT AATTTATTTG 47904 |||||||||| |||||| ATCTCTTAGG AGTTTG.... .......... .......... .......... .......... 76 ATCAAAACTT TCAAGATTCG ATTAATTTGA AGAGTAACGA TTTGTGTTTG ACTAATCAAT 47964 .......... .......... .......... .......... .......... .......... 76 TTGTATCATA TGCATATTTT TTTTTAGATT GATAACTCAG TAGTGGAAAG TTTCGGTGCT 48024 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......ATT GATAACTCAG TAGTGGAAAG TTTCGGTGCT 109 GGTGGCAAAA CATGCATAAC ATCAAGGGTG TATCCAACTT TAGCGATTTA TGATAATGCA 48084 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGCAAAA CATGCATAAC ATCAAGGGTG TATCCAACTT TAGCGATTTA TGATAATGCA 169 CATTTATTTG TTTTTAACAA TGGCTCTGAG ACAATCACAA TTGAGACTCT GAATGCTTGG 48144 |||||||||| |||||||||| ||||| | || |||||||||| |||||||||| |||||||||| CATTTATTTG TTTTTAACAA TGGCTTTTAG ACAATCACAA TTGAGACTCT GAATGCTTGG 229 AGCATGGATG CATGTAAGAT GAACTAAATA TTTTCAAAAA AATTGGAATT ATGTCTACAA 48204 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AGCATGGATG CATGTAAAAT GAACTAAATA TTTTCAAAAA AATTGGAATT ATGTCTACAA 289 TTATATATGT CTAAAGAGAC AAAAATTGTG TTAAATTTAA CAGTAGATGA TGTTCACAAA 48264 |||||||||| |||| | || |||||||||| |||||||||| ||||| |||| |||||||||| TTATATATGT TTAAAAAAAC AAAAATTGTG TTAAATTTAA CAGTAAATGA TGTTCACAAA 349 AATCCTCTAT AATTGTCTCT AATTTATTTT GGTGAATTTA GAAGGCAAAG TGTGTGTATG 48324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCCTCTAT AATTGTCTCT AATTTATTTT GGTGAATTTA GAAGGCAAAG TGTGTGTATG 409 GATTTTTCTA GTACCATATA TATATATATT AAGTAAGAAA TTTGTTAGCT TTCCTTTTTG 48384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTTCTA GTACCATATA TATATATATT AAGTAAGAAA TTTGTTAGCT TTCCTTTTTG 469 TTTTGTAACA TAATCAAATG TGTGGTCTTA TGTAGAACTA ATATTTGGTA ATATTAGGCA 48444 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTTTGTAACA TAATCAAATG TGTGGTTTTA TGTAGAACTA ATATTTGGTA ATATTAGGCA 529 AGTTGTTATG TGACTTATTT TATTCAAAAA TATAATAAGA AGTTCAAAGA GAAGAGTACA 48504 |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | || | | | AGTTGTTATG TGACTTATTT TATTCAAAAA TATAATAAAA AGTTCAAAAA AAAAAAAAAA 589 AGTAAGTAA 48513 | || || AAAAAAAAA 598 hqPGS_C09HBa0168F14.1-2+_SGN-E367949- (47785 47860,47992 48513) ******************************************************************************** EST sequence 108 +strand 769 n (File: SGN-E546911+) 1 CTTATCCCAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATACCACT ATCTGTCAAA 61 GCCCAATTAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 121 GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 181 TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 241 TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGATC CCAATGCACC 301 AATGTATTTC AATGGAGTCT ATCATCTATT CTACCAGTAC AACCCAAATG GTTCAGTATG 361 GGGTAACATT GTTTGGGCTC ATTCAGTTTC AAAAGACTTA ATCAACTGGA TCAATTTAGA 421 ACCTGCAATT TACCCATCAA AGCCATTTGA TCAATTCGGT ACATGGTCTG GATCAGCAAC 481 AATCCTACCT GGTAACAAGC CAGTCATCTT GTACACCGGA ATCATAGATG CCAACCAAAC 541 CCAAGTCCAA AACTACGCAA TCCCAGCTAA CATATCCGAT CCATATCTCC GCGAATGGAT 601 CAAGCCAGAC AACAACCCAC TAATTATAGC CGATGAAAGT ATCAACAAGA CGAAATTCCG 661 TGACCCAACA ACAGCATGGA TGGGTAAAGA TGGACATTGG AGAATTGTTN ATTGGAAGTT 721 TGAGGGAACA CAGCAGGGGT TTAGCTATAA TGTACAGGAG TAAAGACTT Predicted gene structure (within gDNA segment 48811 to 52278): Exon 1 49599 49886 ( 288 n); cDNA 1 287 ( 287 n); score: 0.986 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 288 296 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 0.98) Exon 3 50485 50956 ( 472 n); cDNA 297 769 ( 473 n); score: 0.952 MATCH C09HBa0168F14.1-2+ SGN-E546911+ 0.965 769 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E546911+ (49599 49886,50143 50151,50485 50956) Alignment (genomic DNA sequence = upper lines): CTTATCCAAA AAAAAAAAAA TTAAAAAAAA TTATTTAGAT TAAATATCAC TATCTGTCAA 49658 ||||||| | |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTTATCC-CA AAAAAAAAAA TTAAAAAAAA TTATTTAGAT TAAATACCAC TATCTGTCAA 59 AGCCCAATCA TTAAAATAAA ATAAAAATTA TGGATTATTC ATCTAATAAA AGTTCTCGTT 49718 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCCAATTA TTAAAATAAA ATAAAAATTA TGGATTATTC ATCTAATAAA AGTTCTCGTT 119 GGGCTTTGCC AGTTATCTTA GTTTGCTTTT TTGTAATTTT ATTATCCAAT AATGTTGTTT 49778 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCTTTGCC AGTTATCTTA GTTTGCTTTT TTGTAATTTT ATTATCCAAT AATGTTGTTT 179 TTGCTTCTCA TAAAGTTTTT ATTCACTTGC AATCTCAAAA TGCTGTAAAT GTTCATACTG 49838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTCTCA TAAAGTTTTT ATTCACTTGC AATCTCAAAA TGCTGTAAAT GTTCATACTG 239 TTCATCGAAC TGGTTATCAT TTTCAGCCCG AAAAACATTG GATCAATGGT ATGTTTATTC 49898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTCATCGAAC TGGTTATCAT TTTCAGCCCG AAAAACATTG GATCAATG.. .......... 287 CTTTTTTTCG TCTTTTTTTT ATATATATAT ATAATAAAAC GAACATGTTG TGTTTAGTCT 49958 .......... .......... .......... .......... .......... .......... 287 AGATTTAATA CTAGTGATTT TTTTGACGCT AACAAATAAT CGAGTACTCA CCATTTGTCA 50018 .......... .......... .......... .......... .......... .......... 287 ATAGATACAT TGACATGTAT TAGTATGATT TTCGTCTTTT TTCGTTGTTT CTAATATTAT 50078 .......... .......... .......... .......... .......... .......... 287 TTAATCTTCA CTAATTTTTT TTATTTTTCT TTGAATGATG TCTCTTGGTC AAAACATACA 50138 .......... .......... .......... .......... .......... .......... 287 ATAGATCCCA ATGGTAAGTT AACTATATTT TTGTATATTT TTTAAATTTA TTTTATTCTT 50198 |||||| ||| ....ATCCCA ATG....... .......... .......... .......... .......... 296 ATTATATAAT ATAGGGAAAA AAGGATAAAT ATATCCCCGA ACTATTATAA ATAGTATGCA 50258 .......... .......... .......... .......... .......... .......... 296 CCAGTATCCT CTGTTATACT TTAGAGACAT TTTTGCCGTC AAAAAACTAG AACACATATA 50318 .......... .......... .......... .......... .......... .......... 296 TCCTTTATTT ATCCCGATAT CGAATCGATT GTACCACGAG TGAAGGGTAT AGCTCTAGTT 50378 .......... .......... .......... .......... .......... .......... 296 TTTGGACGGT AGGGCACCTA AAGTATGACG AAGAATATCT GCAAACCATT TACAATAGTT 50438 .......... .......... .......... .......... .......... .......... 296 TTGGATATAT TTGTGAACTA ATGATGTTTG AATTCTTTTT TCATAGCACC AATGTATTTC 50498 |||| |||||||||| .......... .......... .......... .......... ......CACC AATGTATTTC 310 AATGGAGTGT ATCATCTATT CTACCAGTAC AACCCAAATG GTTCAGTATG GGGTAACATT 50558 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGAGTCT ATCATCTATT CTACCAGTAC AACCCAAATG GTTCAGTATG GGGTAACATT 370 GTTTGGGCTC ATTCCGTTTC AAAAGACTTG ATCAATTGGA TCAATTTAGA ACCTGCAATT 50618 |||||||||| |||| ||||| ||||||||| ||||| |||| |||||||||| |||||||||| GTTTGGGCTC ATTCAGTTTC AAAAGACTTA ATCAACTGGA TCAATTTAGA ACCTGCAATT 430 TACCCATCAA AGCCATTTGA TCAATTCGGT ACCTGGTCTG GATCAGCAAC CATCCTACCT 50678 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| TACCCATCAA AGCCATTTGA TCAATTCGGT ACATGGTCTG GATCAGCAAC AATCCTACCT 490 GGTAACAAGC CAGTCATCTT GTACACCGGA ATCATAGATG CCAACCAAAC CCAAGTCCAA 50738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAACAAGC CAGTCATCTT GTACACCGGA ATCATAGATG CCAACCAAAC CCAAGTCCAA 550 AACTACGCAA TCCCAGCTAA CTTATCCGAT CCATATCTCC GCGAATGGAT CAAGCCAGAC 50798 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| AACTACGCAA TCCCAGCTAA CATATCCGAT CCATATCTCC GCGAATGGAT CAAGCCAGAC 610 AACAACCCAT TAATTATAGC CGATGAAAGT ATCAACAAGA CCAAGTTTCG TGACCCAACA 50858 ||||||||| |||||||||| |||||||||| |||||||||| | || || || |||||||||| AACAACCCAC TAATTATAGC CGATGAAAGT ATCAACAAGA CGAAATTCCG TGACCCAACA 670 ACAGCATGGA TGGGTAAAGA CGGGCATTGG AGAATCG-TC ATGGGAAGTT TGAGGAAACA 50917 |||||||||| |||||||||| || |||||| ||||| | | || ||||||| ||||| |||| ACAGCATGGA TGGGTAAAGA TGGACATTGG AGAATTGTTN ATTGGAAGTT TGAGGGAACA 730 CAGCAGGGGC TTAGCTATAA TGTATAGGAG CAAAGACTT 50956 ||||||||| |||||||||| |||| ||||| |||||||| CAGCAGGGGT TTAGCTATAA TGTACAGGAG TAAAGACTT 769 hqPGS_C09HBa0168F14.1-2+_SGN-E546911+ (49599 49886,50143 50151,50485 50956) ******************************************************************************** EST sequence 91 +strand 638 n (File: SGN-E334559+) 1 TTATCCAAAA AAAAAAAATT AAAAAAAATT ATTTAGATTA AATATCACTA TCTGTCAAAG 61 CCCAATCATT AAAATAAAAT AAAAATTATG GATTATTCAT CTAATAAAAG TTCTCGTTGG 121 GCTTTGCCAG TTATCTTAGT TTGCTTTTTT GTAATTTTAT TATCCAATAA TGTTGTTTTT 181 GCTTCTCATA AAGTTTTTAT TCACTTGCAA TCTCAAAATG CTGTAAATGT TCATACTGTT 241 CATCGAACTG GTTATCATTT TCAGCCCGAA AAACATTGGA TCAATGATCC CAATGCACCA 301 ATGTATTTCA ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG 361 GGTAACATTG TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA 421 CCTGCAATTT ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC 481 ATCCTACCTG GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CANCCAAACC 541 CCAGTCCAAA ACTACGCAAT CCCAGCTAAC TTATCCGATC CATATCTCCG CGAATGGATC 601 AAGCCAGACA ACAACCCATT AATTATAGCC GATGAAAG Predicted gene structure (within gDNA segment 49000 to 51437): Exon 1 49600 49886 ( 287 n); cDNA 1 286 ( 286 n); score: 0.997 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 287 295 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50827 ( 343 n); cDNA 296 638 ( 343 n); score: 0.994 MATCH C09HBa0168F14.1-2+ SGN-E334559+ 0.995 639 1.002 C PGS_C09HBa0168F14.1-2+_SGN-E334559+ (49600 49886,50143 50151,50485 50827) Alignment (genomic DNA sequence = upper lines): TTATCCAAAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 49659 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCC-AAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 59 GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 49719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 119 GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 49779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 179 TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 49839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 239 TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGGTA TGTTTATTCC 49899 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATG... .......... 286 TTTTTTTCGT CTTTTTTTTA TATATATATA TAATAAAACG AACATGTTGT GTTTAGTCTA 49959 .......... .......... .......... .......... .......... .......... 286 GATTTAATAC TAGTGATTTT TTTGACGCTA ACAAATAATC GAGTACTCAC CATTTGTCAA 50019 .......... .......... .......... .......... .......... .......... 286 TAGATACATT GACATGTATT AGTATGATTT TCGTCTTTTT TCGTTGTTTC TAATATTATT 50079 .......... .......... .......... .......... .......... .......... 286 TAATCTTCAC TAATTTTTTT TATTTTTCTT TGAATGATGT CTCTTGGTCA AAACATACAA 50139 .......... .......... .......... .......... .......... .......... 286 TAGATCCCAA TGGTAAGTTA ACTATATTTT TGTATATTTT TTAAATTTAT TTTATTCTTA 50199 ||||||| || ...ATCCCAA TG........ .......... .......... .......... .......... 295 TTATATAATA TAGGGAAAAA AGGATAAATA TATCCCCGAA CTATTATAAA TAGTATGCAC 50259 .......... .......... .......... .......... .......... .......... 295 CAGTATCCTC TGTTATACTT TAGAGACATT TTTGCCGTCA AAAAACTAGA ACACATATAT 50319 .......... .......... .......... .......... .......... .......... 295 CCTTTATTTA TCCCGATATC GAATCGATTG TACCACGAGT GAAGGGTATA GCTCTAGTTT 50379 .......... .......... .......... .......... .......... .......... 295 TTGGACGGTA GGGCACCTAA AGTATGACGA AGAATATCTG CAAACCATTT ACAATAGTTT 50439 .......... .......... .......... .......... .......... .......... 295 TGGATATATT TGTGAACTAA TGATGTTTGA ATTCTTTTTT CATAGCACCA ATGTATTTCA 50499 ||||| |||||||||| .......... .......... .......... .......... .....CACCA ATGTATTTCA 310 ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG GGTAACATTG 50559 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG GGTAACATTG 370 TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA CCTGCAATTT 50619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA CCTGCAATTT 430 ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC ATCCTACCTG 50679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC ATCCTACCTG 490 GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC CAAGTCCAAA 50739 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| | |||||||| GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CANCCAAACC CCAGTCCAAA 550 ACTACGCAAT CCCAGCTAAC TTATCCGATC CATATCTCCG CGAATGGATC AAGCCAGACA 50799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACGCAAT CCCAGCTAAC TTATCCGATC CATATCTCCG CGAATGGATC AAGCCAGACA 610 ACAACCCATT AATTATAGCC GATGAAAG 50827 |||||||||| |||||||||| |||||||| ACAACCCATT AATTATAGCC GATGAAAG 638 hqPGS_C09HBa0168F14.1-2+_SGN-E334559+ (49600 49886,50143 50151,50485 50827) ******************************************************************************** EST sequence 112 +strand 567 n (File: SGN-E331604+) 1 TTATCCAAAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 61 GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 121 GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 181 TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 241 TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGATC CCAATGCACC 301 AATGTATTTC AATGGAGTGT ATCATCTATT CTACCAGTAC AACCCAAATG GTTCAGTATG 361 GGGTAACATT GTTTGGGCTC ATTCCGTTTC AAAAGACTTG ATCAATTGGA TCAATTTAGA 421 ACCTGCAATT TACCCATCAA AGCCATTTGA TCAATTCGGT ACCTGGTCTG GATCAGCAAC 481 CATCCTACCT GGTAACAAGC CAGTCATCTT GTACACCGGA ATCATAGATG CCAACCAAAC 541 CCAAGTCCAA AACTACGCAA TCCCAGC Predicted gene structure (within gDNA segment 49000 to 51365): Exon 1 49600 49886 ( 287 n); cDNA 1 287 ( 287 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 288 296 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50755 ( 271 n); cDNA 297 567 ( 271 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E331604+ 1.000 567 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E331604+ (49600 49886,50143 50151,50485 50755) Alignment (genomic DNA sequence = upper lines): TTATCCAAAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 49659 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCCAAAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 60 GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 49719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 120 GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 49779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 180 TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 49839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 240 TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGGTA TGTTTATTCC 49899 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATG... .......... 287 TTTTTTTCGT CTTTTTTTTA TATATATATA TAATAAAACG AACATGTTGT GTTTAGTCTA 49959 .......... .......... .......... .......... .......... .......... 287 GATTTAATAC TAGTGATTTT TTTGACGCTA ACAAATAATC GAGTACTCAC CATTTGTCAA 50019 .......... .......... .......... .......... .......... .......... 287 TAGATACATT GACATGTATT AGTATGATTT TCGTCTTTTT TCGTTGTTTC TAATATTATT 50079 .......... .......... .......... .......... .......... .......... 287 TAATCTTCAC TAATTTTTTT TATTTTTCTT TGAATGATGT CTCTTGGTCA AAACATACAA 50139 .......... .......... .......... .......... .......... .......... 287 TAGATCCCAA TGGTAAGTTA ACTATATTTT TGTATATTTT TTAAATTTAT TTTATTCTTA 50199 ||||||| || ...ATCCCAA TG........ .......... .......... .......... .......... 296 TTATATAATA TAGGGAAAAA AGGATAAATA TATCCCCGAA CTATTATAAA TAGTATGCAC 50259 .......... .......... .......... .......... .......... .......... 296 CAGTATCCTC TGTTATACTT TAGAGACATT TTTGCCGTCA AAAAACTAGA ACACATATAT 50319 .......... .......... .......... .......... .......... .......... 296 CCTTTATTTA TCCCGATATC GAATCGATTG TACCACGAGT GAAGGGTATA GCTCTAGTTT 50379 .......... .......... .......... .......... .......... .......... 296 TTGGACGGTA GGGCACCTAA AGTATGACGA AGAATATCTG CAAACCATTT ACAATAGTTT 50439 .......... .......... .......... .......... .......... .......... 296 TGGATATATT TGTGAACTAA TGATGTTTGA ATTCTTTTTT CATAGCACCA ATGTATTTCA 50499 ||||| |||||||||| .......... .......... .......... .......... .....CACCA ATGTATTTCA 311 ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG GGTAACATTG 50559 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG GGTAACATTG 371 TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA CCTGCAATTT 50619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA CCTGCAATTT 431 ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC ATCCTACCTG 50679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC ATCCTACCTG 491 GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC CAAGTCCAAA 50739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC CAAGTCCAAA 551 ACTACGCAAT CCCAGC 50755 |||||||||| |||||| ACTACGCAAT CCCAGC 567 hqPGS_C09HBa0168F14.1-2+_SGN-E331604+ (49600 49886,50143 50151,50485 50755) ******************************************************************************** EST sequence 87 +strand 554 n (File: SGN-E334572+) 1 TTATCCAAAA AAAAAAAATT AAAAAAAATT ATTTAGATTA AATATCACTA TCTGTCAAAG 61 CCCAATCATT AAAATAAAAT AAAAATTATG GATTATTCAT CTAATAAAAG TTCTCGTTGG 121 GCTTTGCCAG TTATCTTAGT TTGCTTTTTT GTAATTTTAT TATCCAATAA TGTTGTTTTT 181 GCTTCTCATA AAGTTTTTAT TCACTTGCAA TCTCAAAATG CTGTAAATGT TCATACTGTT 241 CATCGAACTG GTTATCATTT TCAGCCCGAA AAACATTGGA TCAATGATCC CAATGCACCA 301 ATGTATTTCA ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG 361 GGTAACATTG TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA 421 CCTGCAATTT ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC 481 ATCCTACCTG GNTAACAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC 541 CAAGTCCAAA ACTA Predicted gene structure (within gDNA segment 49000 to 51353): Exon 1 49600 49886 ( 287 n); cDNA 1 286 ( 286 n); score: 0.997 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 287 295 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50743 ( 259 n); cDNA 296 554 ( 259 n); score: 0.985 MATCH C09HBa0168F14.1-2+ SGN-E334572+ 0.991 555 1.002 C PGS_C09HBa0168F14.1-2+_SGN-E334572+ (49600 49886,50143 50151,50485 50743) Alignment (genomic DNA sequence = upper lines): TTATCCAAAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 49659 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCC-AAA AAAAAAAAAT TAAAAAAAAT TATTTAGATT AAATATCACT ATCTGTCAAA 59 GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 49719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCAATCAT TAAAATAAAA TAAAAATTAT GGATTATTCA TCTAATAAAA GTTCTCGTTG 119 GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 49779 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGCCA GTTATCTTAG TTTGCTTTTT TGTAATTTTA TTATCCAATA ATGTTGTTTT 179 TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 49839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTTCTCAT AAAGTTTTTA TTCACTTGCA ATCTCAAAAT GCTGTAAATG TTCATACTGT 239 TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGGTA TGTTTATTCC 49899 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATG... .......... 286 TTTTTTTCGT CTTTTTTTTA TATATATATA TAATAAAACG AACATGTTGT GTTTAGTCTA 49959 .......... .......... .......... .......... .......... .......... 286 GATTTAATAC TAGTGATTTT TTTGACGCTA ACAAATAATC GAGTACTCAC CATTTGTCAA 50019 .......... .......... .......... .......... .......... .......... 286 TAGATACATT GACATGTATT AGTATGATTT TCGTCTTTTT TCGTTGTTTC TAATATTATT 50079 .......... .......... .......... .......... .......... .......... 286 TAATCTTCAC TAATTTTTTT TATTTTTCTT TGAATGATGT CTCTTGGTCA AAACATACAA 50139 .......... .......... .......... .......... .......... .......... 286 TAGATCCCAA TGGTAAGTTA ACTATATTTT TGTATATTTT TTAAATTTAT TTTATTCTTA 50199 ||||||| || ...ATCCCAA TG........ .......... .......... .......... .......... 295 TTATATAATA TAGGGAAAAA AGGATAAATA TATCCCCGAA CTATTATAAA TAGTATGCAC 50259 .......... .......... .......... .......... .......... .......... 295 CAGTATCCTC TGTTATACTT TAGAGACATT TTTGCCGTCA AAAAACTAGA ACACATATAT 50319 .......... .......... .......... .......... .......... .......... 295 CCTTTATTTA TCCCGATATC GAATCGATTG TACCACGAGT GAAGGGTATA GCTCTAGTTT 50379 .......... .......... .......... .......... .......... .......... 295 TTGGACGGTA GGGCACCTAA AGTATGACGA AGAATATCTG CAAACCATTT ACAATAGTTT 50439 .......... .......... .......... .......... .......... .......... 295 TGGATATATT TGTGAACTAA TGATGTTTGA ATTCTTTTTT CATAGCACCA ATGTATTTCA 50499 ||||| |||||||||| .......... .......... .......... .......... .....CACCA ATGTATTTCA 310 ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG GGTAACATTG 50559 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG GGTAACATTG 370 TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA CCTGCAATTT 50619 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA CCTGCAATTT 430 ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC ATCCTACCTG 50679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC ATCCTACCTG 490 GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC CAAGTCCAAA 50739 | | |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GNTAACAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC CAAGTCCAAA 550 ACTA 50743 |||| ACTA 554 hqPGS_C09HBa0168F14.1-2+_SGN-E334572+ (49600 49886,50143 50151,50485 50743) ******************************************************************************** EST sequence 69 +strand 592 n (File: SGN-E332525+) 1 AAAAAAATTA AAAAAAATTA TTTAGATTAA ATATCACTAT CTGTCAAAGC CCAATCATTA 61 AAATAAAATA AAAATTATGG ATTATTCATC TAATAAAAGT TCTCGTTGGG CTTTGCCAGT 121 TATCTTAGTT TGCTTTTTTG TAATTTTATT ATCCAATAAT GTTGTTTTTG CTTCTCATAA 181 AGTTTTTATT CACTTGCAAT CTCAAAATGC TGTAAATGTT CATACTGTTC ATCGAACTGG 241 TTATCATTTT CAGCCCGAAA AACATTGGAT CAATGATCCC AATGCACCAA TGTATTTCAA 301 TGGAGTGTAT CATCTATTCT ACCAGTACAA CCCAAATGGT TCAGTATGGG GTAACATTGT 361 TTGGGCTCAT TCCGTTTCAA AAGACTTGAT CAATTGGATC AATTTAGAAC CTGCAATTTA 421 CCCATCAAAG CCATTTGATC AATTCGGTAC CTGGTCTGGA TCAGCAACCA TCCTACCTGG 481 TAACAAGCCA GTCATCTTGT ACACCGGAAT CATAGATGCC AACCAAACCC AAGTCCAAAA 541 CTACGCAATC CCAGCTAACT TATCCGATCC ATATCTCCGC GAATGGATCA AG Predicted gene structure (within gDNA segment 48931 to 51402): Exon 1 49612 49886 ( 275 n); cDNA 1 275 ( 275 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 276 284 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50792 ( 308 n); cDNA 285 592 ( 308 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E332525+ 1.000 592 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E332525+ (49612 49886,50143 50151,50485 50792) Alignment (genomic DNA sequence = upper lines): AAAAAAATTA AAAAAAATTA TTTAGATTAA ATATCACTAT CTGTCAAAGC CCAATCATTA 49671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAATTA AAAAAAATTA TTTAGATTAA ATATCACTAT CTGTCAAAGC CCAATCATTA 60 AAATAAAATA AAAATTATGG ATTATTCATC TAATAAAAGT TCTCGTTGGG CTTTGCCAGT 49731 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAAAATA AAAATTATGG ATTATTCATC TAATAAAAGT TCTCGTTGGG CTTTGCCAGT 120 TATCTTAGTT TGCTTTTTTG TAATTTTATT ATCCAATAAT GTTGTTTTTG CTTCTCATAA 49791 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTTAGTT TGCTTTTTTG TAATTTTATT ATCCAATAAT GTTGTTTTTG CTTCTCATAA 180 AGTTTTTATT CACTTGCAAT CTCAAAATGC TGTAAATGTT CATACTGTTC ATCGAACTGG 49851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTTTATT CACTTGCAAT CTCAAAATGC TGTAAATGTT CATACTGTTC ATCGAACTGG 240 TTATCATTTT CAGCCCGAAA AACATTGGAT CAATGGTATG TTTATTCCTT TTTTTCGTCT 49911 |||||||||| |||||||||| |||||||||| ||||| TTATCATTTT CAGCCCGAAA AACATTGGAT CAATG..... .......... .......... 275 TTTTTTTATA TATATATATA ATAAAACGAA CATGTTGTGT TTAGTCTAGA TTTAATACTA 49971 .......... .......... .......... .......... .......... .......... 275 GTGATTTTTT TGACGCTAAC AAATAATCGA GTACTCACCA TTTGTCAATA GATACATTGA 50031 .......... .......... .......... .......... .......... .......... 275 CATGTATTAG TATGATTTTC GTCTTTTTTC GTTGTTTCTA ATATTATTTA ATCTTCACTA 50091 .......... .......... .......... .......... .......... .......... 275 ATTTTTTTTA TTTTTCTTTG AATGATGTCT CTTGGTCAAA ACATACAATA GATCCCAATG 50151 ||||||||| .......... .......... .......... .......... .......... .ATCCCAATG 284 GTAAGTTAAC TATATTTTTG TATATTTTTT AAATTTATTT TATTCTTATT ATATAATATA 50211 .......... .......... .......... .......... .......... .......... 284 GGGAAAAAAG GATAAATATA TCCCCGAACT ATTATAAATA GTATGCACCA GTATCCTCTG 50271 .......... .......... .......... .......... .......... .......... 284 TTATACTTTA GAGACATTTT TGCCGTCAAA AAACTAGAAC ACATATATCC TTTATTTATC 50331 .......... .......... .......... .......... .......... .......... 284 CCGATATCGA ATCGATTGTA CCACGAGTGA AGGGTATAGC TCTAGTTTTT GGACGGTAGG 50391 .......... .......... .......... .......... .......... .......... 284 GCACCTAAAG TATGACGAAG AATATCTGCA AACCATTTAC AATAGTTTTG GATATATTTG 50451 .......... .......... .......... .......... .......... .......... 284 TGAACTAATG ATGTTTGAAT TCTTTTTTCA TAGCACCAAT GTATTTCAAT GGAGTGTATC 50511 ||||||| |||||||||| |||||||||| .......... .......... .......... ...CACCAAT GTATTTCAAT GGAGTGTATC 311 ATCTATTCTA CCAGTACAAC CCAAATGGTT CAGTATGGGG TAACATTGTT TGGGCTCATT 50571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATTCTA CCAGTACAAC CCAAATGGTT CAGTATGGGG TAACATTGTT TGGGCTCATT 371 CCGTTTCAAA AGACTTGATC AATTGGATCA ATTTAGAACC TGCAATTTAC CCATCAAAGC 50631 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTTCAAA AGACTTGATC AATTGGATCA ATTTAGAACC TGCAATTTAC CCATCAAAGC 431 CATTTGATCA ATTCGGTACC TGGTCTGGAT CAGCAACCAT CCTACCTGGT AACAAGCCAG 50691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTGATCA ATTCGGTACC TGGTCTGGAT CAGCAACCAT CCTACCTGGT AACAAGCCAG 491 TCATCTTGTA CACCGGAATC ATAGATGCCA ACCAAACCCA AGTCCAAAAC TACGCAATCC 50751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTGTA CACCGGAATC ATAGATGCCA ACCAAACCCA AGTCCAAAAC TACGCAATCC 551 CAGCTAACTT ATCCGATCCA TATCTCCGCG AATGGATCAA G 50792 |||||||||| |||||||||| |||||||||| |||||||||| | CAGCTAACTT ATCCGATCCA TATCTCCGCG AATGGATCAA G 592 hqPGS_C09HBa0168F14.1-2+_SGN-E332525+ (49612 49886,50143 50151,50485 50792) ******************************************************************************** EST sequence 100 +strand 460 n (File: SGN-E329652+) 1 AAAAATTAAA AAAAATTATT TAGATTAAAT ATCACTATCT GTCAAAGCCC AATCATTAAA 61 ATAAAATAAA AATTATGGAT TATTCATCTA ATAAAAGTTC TCGTTGGGCT TTGCCAGTTA 121 TCTTAGTTTG CTTTTTTGTA ATTTTATTAT CCAATAATGT TGTTTTTGCT TCTCATAAAG 181 TTTTTATTCA CTTGCAATCT CAAAATGCTG TAAATGTTCA TACTGTTCAT CGAACTGGTT 241 ATCATTTTCA GCCCGAAAAA CATTGGATCA ATGATCCCAA TGCACCAATG TATTTCAATG 301 GAGTGTATCA TCTATTCTAC CAGTACAACC CAAATGGTTC AGTATGGGGT AACATTGTTT 361 GGGCTCATTC CGTTTCAAAA GACTTGATCA ATTGGATCAA TTTAGAACCT GCAATTTACC 421 CATCAAAGCC ATTTGATCAA TTCGGTACCT GGTCTGGATC Predicted gene structure (within gDNA segment 48951 to 51272): Exon 1 49614 49886 ( 273 n); cDNA 1 273 ( 273 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 274 282 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50662 ( 178 n); cDNA 283 460 ( 178 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E329652+ 1.000 460 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E329652+ (49614 49886,50143 50151,50485 50662) Alignment (genomic DNA sequence = upper lines): AAAAATTAAA AAAAATTATT TAGATTAAAT ATCACTATCT GTCAAAGCCC AATCATTAAA 49673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATTAAA AAAAATTATT TAGATTAAAT ATCACTATCT GTCAAAGCCC AATCATTAAA 60 ATAAAATAAA AATTATGGAT TATTCATCTA ATAAAAGTTC TCGTTGGGCT TTGCCAGTTA 49733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAATAAA AATTATGGAT TATTCATCTA ATAAAAGTTC TCGTTGGGCT TTGCCAGTTA 120 TCTTAGTTTG CTTTTTTGTA ATTTTATTAT CCAATAATGT TGTTTTTGCT TCTCATAAAG 49793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAGTTTG CTTTTTTGTA ATTTTATTAT CCAATAATGT TGTTTTTGCT TCTCATAAAG 180 TTTTTATTCA CTTGCAATCT CAAAATGCTG TAAATGTTCA TACTGTTCAT CGAACTGGTT 49853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTATTCA CTTGCAATCT CAAAATGCTG TAAATGTTCA TACTGTTCAT CGAACTGGTT 240 ATCATTTTCA GCCCGAAAAA CATTGGATCA ATGGTATGTT TATTCCTTTT TTTCGTCTTT 49913 |||||||||| |||||||||| |||||||||| ||| ATCATTTTCA GCCCGAAAAA CATTGGATCA ATG....... .......... .......... 273 TTTTTATATA TATATATAAT AAAACGAACA TGTTGTGTTT AGTCTAGATT TAATACTAGT 49973 .......... .......... .......... .......... .......... .......... 273 GATTTTTTTG ACGCTAACAA ATAATCGAGT ACTCACCATT TGTCAATAGA TACATTGACA 50033 .......... .......... .......... .......... .......... .......... 273 TGTATTAGTA TGATTTTCGT CTTTTTTCGT TGTTTCTAAT ATTATTTAAT CTTCACTAAT 50093 .......... .......... .......... .......... .......... .......... 273 TTTTTTTATT TTTCTTTGAA TGATGTCTCT TGGTCAAAAC ATACAATAGA TCCCAATGGT 50153 | |||||||| .......... .......... .......... .......... .........A TCCCAATG.. 282 AAGTTAACTA TATTTTTGTA TATTTTTTAA ATTTATTTTA TTCTTATTAT ATAATATAGG 50213 .......... .......... .......... .......... .......... .......... 282 GAAAAAAGGA TAAATATATC CCCGAACTAT TATAAATAGT ATGCACCAGT ATCCTCTGTT 50273 .......... .......... .......... .......... .......... .......... 282 ATACTTTAGA GACATTTTTG CCGTCAAAAA ACTAGAACAC ATATATCCTT TATTTATCCC 50333 .......... .......... .......... .......... .......... .......... 282 GATATCGAAT CGATTGTACC ACGAGTGAAG GGTATAGCTC TAGTTTTTGG ACGGTAGGGC 50393 .......... .......... .......... .......... .......... .......... 282 ACCTAAAGTA TGACGAAGAA TATCTGCAAA CCATTTACAA TAGTTTTGGA TATATTTGTG 50453 .......... .......... .......... .......... .......... .......... 282 AACTAATGAT GTTTGAATTC TTTTTTCATA GCACCAATGT ATTTCAATGG AGTGTATCAT 50513 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CACCAATGT ATTTCAATGG AGTGTATCAT 311 CTATTCTACC AGTACAACCC AAATGGTTCA GTATGGGGTA ACATTGTTTG GGCTCATTCC 50573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTCTACC AGTACAACCC AAATGGTTCA GTATGGGGTA ACATTGTTTG GGCTCATTCC 371 GTTTCAAAAG ACTTGATCAA TTGGATCAAT TTAGAACCTG CAATTTACCC ATCAAAGCCA 50633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAAAAG ACTTGATCAA TTGGATCAAT TTAGAACCTG CAATTTACCC ATCAAAGCCA 431 TTTGATCAAT TCGGTACCTG GTCTGGATC 50662 |||||||||| |||||||||| ||||||||| TTTGATCAAT TCGGTACCTG GTCTGGATC 460 hqPGS_C09HBa0168F14.1-2+_SGN-E329652+ (49614 49886,50143 50151,50485 50662) ******************************************************************************** EST sequence 4 +strand 426 n (File: SGN-E331382+) 1 AAAATTAAAA AAAATTATTT AGATTAAATA TCACTATCTG TCAAAGCCCA ATCATTAAAA 61 TAAAATAAAA ATTATGGATT ATTCATCTAA TAAAAGTTCT CGTTGGGCTT TGCCAGTTAT 121 CTTAGTTTGC TTTTTTGTAA TTTTATTATC CAATAATGTT GTTTTTGCTT CTCATAAAGT 181 TTTTATTCAC TTGCAATCTC AAAATGCTGT AAATGTTCAT ACTGTTCATC GAACTGGTTA 241 TCATTTTCAG CCCGAAAAAC ATTGGATCAA TGATCCCAAT GCACCAATGT ATTTCAATGG 301 AGTGTATCAT CTATTCTACC AGTACAACCC AAATGGTTCA GTATGGGGTA ACATTGTTTG 361 GGCTCATTCC GTTTCAAAAG ACTTGATCAA TTGGATCAAT TTAGAACCTG CAATTTACCC 421 ATCAAA Predicted gene structure (within gDNA segment 48961 to 51239): Exon 1 49615 49886 ( 272 n); cDNA 1 272 ( 272 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 273 281 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50629 ( 145 n); cDNA 282 426 ( 145 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E331382+ 1.000 426 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E331382+ (49615 49886,50143 50151,50485 50629) Alignment (genomic DNA sequence = upper lines): AAAATTAAAA AAAATTATTT AGATTAAATA TCACTATCTG TCAAAGCCCA ATCATTAAAA 49674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTAAAA AAAATTATTT AGATTAAATA TCACTATCTG TCAAAGCCCA ATCATTAAAA 60 TAAAATAAAA ATTATGGATT ATTCATCTAA TAAAAGTTCT CGTTGGGCTT TGCCAGTTAT 49734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATAAAA ATTATGGATT ATTCATCTAA TAAAAGTTCT CGTTGGGCTT TGCCAGTTAT 120 CTTAGTTTGC TTTTTTGTAA TTTTATTATC CAATAATGTT GTTTTTGCTT CTCATAAAGT 49794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGTTTGC TTTTTTGTAA TTTTATTATC CAATAATGTT GTTTTTGCTT CTCATAAAGT 180 TTTTATTCAC TTGCAATCTC AAAATGCTGT AAATGTTCAT ACTGTTCATC GAACTGGTTA 49854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATTCAC TTGCAATCTC AAAATGCTGT AAATGTTCAT ACTGTTCATC GAACTGGTTA 240 TCATTTTCAG CCCGAAAAAC ATTGGATCAA TGGTATGTTT ATTCCTTTTT TTCGTCTTTT 49914 |||||||||| |||||||||| |||||||||| || TCATTTTCAG CCCGAAAAAC ATTGGATCAA TG........ .......... .......... 272 TTTTATATAT ATATATAATA AAACGAACAT GTTGTGTTTA GTCTAGATTT AATACTAGTG 49974 .......... .......... .......... .......... .......... .......... 272 ATTTTTTTGA CGCTAACAAA TAATCGAGTA CTCACCATTT GTCAATAGAT ACATTGACAT 50034 .......... .......... .......... .......... .......... .......... 272 GTATTAGTAT GATTTTCGTC TTTTTTCGTT GTTTCTAATA TTATTTAATC TTCACTAATT 50094 .......... .......... .......... .......... .......... .......... 272 TTTTTTATTT TTCTTTGAAT GATGTCTCTT GGTCAAAACA TACAATAGAT CCCAATGGTA 50154 || ||||||| .......... .......... .......... .......... ........AT CCCAATG... 281 AGTTAACTAT ATTTTTGTAT ATTTTTTAAA TTTATTTTAT TCTTATTATA TAATATAGGG 50214 .......... .......... .......... .......... .......... .......... 281 AAAAAAGGAT AAATATATCC CCGAACTATT ATAAATAGTA TGCACCAGTA TCCTCTGTTA 50274 .......... .......... .......... .......... .......... .......... 281 TACTTTAGAG ACATTTTTGC CGTCAAAAAA CTAGAACACA TATATCCTTT ATTTATCCCG 50334 .......... .......... .......... .......... .......... .......... 281 ATATCGAATC GATTGTACCA CGAGTGAAGG GTATAGCTCT AGTTTTTGGA CGGTAGGGCA 50394 .......... .......... .......... .......... .......... .......... 281 CCTAAAGTAT GACGAAGAAT ATCTGCAAAC CATTTACAAT AGTTTTGGAT ATATTTGTGA 50454 .......... .......... .......... .......... .......... .......... 281 ACTAATGATG TTTGAATTCT TTTTTCATAG CACCAATGTA TTTCAATGGA GTGTATCATC 50514 |||||||||| |||||||||| |||||||||| .......... .......... .......... CACCAATGTA TTTCAATGGA GTGTATCATC 311 TATTCTACCA GTACAACCCA AATGGTTCAG TATGGGGTAA CATTGTTTGG GCTCATTCCG 50574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCTACCA GTACAACCCA AATGGTTCAG TATGGGGTAA CATTGTTTGG GCTCATTCCG 371 TTTCAAAAGA CTTGATCAAT TGGATCAATT TAGAACCTGC AATTTACCCA TCAAA 50629 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTTCAAAAGA CTTGATCAAT TGGATCAATT TAGAACCTGC AATTTACCCA TCAAA 426 hqPGS_C09HBa0168F14.1-2+_SGN-E331382+ (49615 49886,50143 50151,50485 50629) ******************************************************************************** EST sequence 86 +strand 624 n (File: SGN-E334424+) 1 ATTAAAAAAA ATTATTTAGA TTAAATATCA CTATCTGTCA AAGCCCAATC ATTAAAATAA 61 AATAAAAATT ATGGATTATT CATCTAATAA AAGTTCTCGT TGGGCTTTGC CAGTTATCTT 121 AGTTTGCTTT TTTGTAATTT TATTATCCAA TAATGTTGTT TTTGCTTCTC ATAAAGTTTT 181 TATTCACTTG CAATCTCAAA ATGCTGTAAA TGTTCATACT GTTCATCGAA CTGGTTATCA 241 TTTTCAGCCC GAAAAACATT GGATCAATGA TCCCAATGCA CCAATGTATT TCAATGGAGT 301 GTATCATCTA TTCTACCAGT ACAACCCAAA TGGTTCAGTA TGGGGTAACA TTGTTTGGGC 361 TCATTCCGTT TCAAAAGACT TGATCAATTG GATCAATTTA GAACCTGCAA TTTACCCATC 421 AAAGCCATTT GATCAATTCG GTACCTGGTC TGGATCAGCA ACCATCCTAC CTGGTAACAA 481 GCCAGTCATC TTGTACACCG GAATCATAGA TGCCAACCAA ACCCAAGTCC AAAACTACGC 541 AATCCCAGCT AACTTATCCG ATCCATATCT CCGCGAATGG ATCAAGCCAG ACAACNACCC 601 ATTAATTATA GCCGATGAAA GTAT Predicted gene structure (within gDNA segment 48991 to 51440): Exon 1 49618 49886 ( 269 n); cDNA 1 269 ( 269 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 270 278 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50830 ( 346 n); cDNA 279 624 ( 346 n); score: 0.997 MATCH C09HBa0168F14.1-2+ SGN-E334424+ 0.998 624 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E334424+ (49618 49886,50143 50151,50485 50830) Alignment (genomic DNA sequence = upper lines): ATTAAAAAAA ATTATTTAGA TTAAATATCA CTATCTGTCA AAGCCCAATC ATTAAAATAA 49677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAAAAAA ATTATTTAGA TTAAATATCA CTATCTGTCA AAGCCCAATC ATTAAAATAA 60 AATAAAAATT ATGGATTATT CATCTAATAA AAGTTCTCGT TGGGCTTTGC CAGTTATCTT 49737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAAAAATT ATGGATTATT CATCTAATAA AAGTTCTCGT TGGGCTTTGC CAGTTATCTT 120 AGTTTGCTTT TTTGTAATTT TATTATCCAA TAATGTTGTT TTTGCTTCTC ATAAAGTTTT 49797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGCTTT TTTGTAATTT TATTATCCAA TAATGTTGTT TTTGCTTCTC ATAAAGTTTT 180 TATTCACTTG CAATCTCAAA ATGCTGTAAA TGTTCATACT GTTCATCGAA CTGGTTATCA 49857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCACTTG CAATCTCAAA ATGCTGTAAA TGTTCATACT GTTCATCGAA CTGGTTATCA 240 TTTTCAGCCC GAAAAACATT GGATCAATGG TATGTTTATT CCTTTTTTTC GTCTTTTTTT 49917 |||||||||| |||||||||| ||||||||| TTTTCAGCCC GAAAAACATT GGATCAATG. .......... .......... .......... 269 TATATATATA TATAATAAAA CGAACATGTT GTGTTTAGTC TAGATTTAAT ACTAGTGATT 49977 .......... .......... .......... .......... .......... .......... 269 TTTTTGACGC TAACAAATAA TCGAGTACTC ACCATTTGTC AATAGATACA TTGACATGTA 50037 .......... .......... .......... .......... .......... .......... 269 TTAGTATGAT TTTCGTCTTT TTTCGTTGTT TCTAATATTA TTTAATCTTC ACTAATTTTT 50097 .......... .......... .......... .......... .......... .......... 269 TTTATTTTTC TTTGAATGAT GTCTCTTGGT CAAAACATAC AATAGATCCC AATGGTAAGT 50157 ||||| |||| .......... .......... .......... .......... .....ATCCC AATG...... 278 TAACTATATT TTTGTATATT TTTTAAATTT ATTTTATTCT TATTATATAA TATAGGGAAA 50217 .......... .......... .......... .......... .......... .......... 278 AAAGGATAAA TATATCCCCG AACTATTATA AATAGTATGC ACCAGTATCC TCTGTTATAC 50277 .......... .......... .......... .......... .......... .......... 278 TTTAGAGACA TTTTTGCCGT CAAAAAACTA GAACACATAT ATCCTTTATT TATCCCGATA 50337 .......... .......... .......... .......... .......... .......... 278 TCGAATCGAT TGTACCACGA GTGAAGGGTA TAGCTCTAGT TTTTGGACGG TAGGGCACCT 50397 .......... .......... .......... .......... .......... .......... 278 AAAGTATGAC GAAGAATATC TGCAAACCAT TTACAATAGT TTTGGATATA TTTGTGAACT 50457 .......... .......... .......... .......... .......... .......... 278 AATGATGTTT GAATTCTTTT TTCATAGCAC CAATGTATTT CAATGGAGTG TATCATCTAT 50517 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......CAC CAATGTATTT CAATGGAGTG TATCATCTAT 311 TCTACCAGTA CAACCCAAAT GGTTCAGTAT GGGGTAACAT TGTTTGGGCT CATTCCGTTT 50577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTACCAGTA CAACCCAAAT GGTTCAGTAT GGGGTAACAT TGTTTGGGCT CATTCCGTTT 371 CAAAAGACTT GATCAATTGG ATCAATTTAG AACCTGCAAT TTACCCATCA AAGCCATTTG 50637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGACTT GATCAATTGG ATCAATTTAG AACCTGCAAT TTACCCATCA AAGCCATTTG 431 ATCAATTCGG TACCTGGTCT GGATCAGCAA CCATCCTACC TGGTAACAAG CCAGTCATCT 50697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAATTCGG TACCTGGTCT GGATCAGCAA CCATCCTACC TGGTAACAAG CCAGTCATCT 491 TGTACACCGG AATCATAGAT GCCAACCAAA CCCAAGTCCA AAACTACGCA ATCCCAGCTA 50757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACACCGG AATCATAGAT GCCAACCAAA CCCAAGTCCA AAACTACGCA ATCCCAGCTA 551 ACTTATCCGA TCCATATCTC CGCGAATGGA TCAAGCCAGA CAACAACCCA TTAATTATAG 50817 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ACTTATCCGA TCCATATCTC CGCGAATGGA TCAAGCCAGA CAACNACCCA TTAATTATAG 611 CCGATGAAAG TAT 50830 |||||||||| ||| CCGATGAAAG TAT 624 hqPGS_C09HBa0168F14.1-2+_SGN-E334424+ (49618 49886,50143 50151,50485 50830) ******************************************************************************** EST sequence 81 +strand 562 n (File: SGN-E334092+) 1 AATTATTTAG ATTAAATATC ACTATCTGTC AAAGCCCAAT CATTAAAATA AAATAAAAAT 61 TATGGATTAT TCATCTAATA AAAGTTCTCG TTGGGCTTTG CCAGTTATCT TAGTTTGCTT 121 TTTTGTAATT TTATTATCCA ATAATGTTGT TTTTGCTTCT CATAAAGTTT TTATTCACTT 181 GCAATCTCAA AATGCTGTAA ATGTTCATAC TGTTCATCGA ACTGGTTATC ATTTTCAGCC 241 CGAAAAACAT TGGATCAATG ATCCCAATGC ACCAATGTAT TTCAATGGAG TGTATCATCT 301 ATTCTACCAG TACAACCCAA ATGGTTCAGT ATGGGGTAAC ATTGTTTGGG CTCATTCCGT 361 TTCAAAAGAC TTGATCAATT GGATCAATTT AGAACCTGCA ATTTACCCAT CAAAGCCATT 421 TGATCAATTC GGTACCTGGT CTGGATCAGC AACCATCCTA CCTGGTAACA AGCCAGTCAT 481 CTTGTACACC GGAATCATAG ATGCCAACCA AACCCAAGTC CAAAACTACG CAATCCCAGC 541 TAACTTATCC GATCCATATC TC Predicted gene structure (within gDNA segment 49027 to 51387): Exon 1 49627 49886 ( 260 n); cDNA 1 260 ( 260 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 261 269 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50777 ( 293 n); cDNA 270 562 ( 293 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E334092+ 1.000 562 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E334092+ (49627 49886,50143 50151,50485 50777) Alignment (genomic DNA sequence = upper lines): AATTATTTAG ATTAAATATC ACTATCTGTC AAAGCCCAAT CATTAAAATA AAATAAAAAT 49686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATTTAG ATTAAATATC ACTATCTGTC AAAGCCCAAT CATTAAAATA AAATAAAAAT 60 TATGGATTAT TCATCTAATA AAAGTTCTCG TTGGGCTTTG CCAGTTATCT TAGTTTGCTT 49746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGATTAT TCATCTAATA AAAGTTCTCG TTGGGCTTTG CCAGTTATCT TAGTTTGCTT 120 TTTTGTAATT TTATTATCCA ATAATGTTGT TTTTGCTTCT CATAAAGTTT TTATTCACTT 49806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGTAATT TTATTATCCA ATAATGTTGT TTTTGCTTCT CATAAAGTTT TTATTCACTT 180 GCAATCTCAA AATGCTGTAA ATGTTCATAC TGTTCATCGA ACTGGTTATC ATTTTCAGCC 49866 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATCTCAA AATGCTGTAA ATGTTCATAC TGTTCATCGA ACTGGTTATC ATTTTCAGCC 240 CGAAAAACAT TGGATCAATG GTATGTTTAT TCCTTTTTTT CGTCTTTTTT TTATATATAT 49926 |||||||||| |||||||||| CGAAAAACAT TGGATCAATG .......... .......... .......... .......... 260 ATATAATAAA ACGAACATGT TGTGTTTAGT CTAGATTTAA TACTAGTGAT TTTTTTGACG 49986 .......... .......... .......... .......... .......... .......... 260 CTAACAAATA ATCGAGTACT CACCATTTGT CAATAGATAC ATTGACATGT ATTAGTATGA 50046 .......... .......... .......... .......... .......... .......... 260 TTTTCGTCTT TTTTCGTTGT TTCTAATATT ATTTAATCTT CACTAATTTT TTTTATTTTT 50106 .......... .......... .......... .......... .......... .......... 260 CTTTGAATGA TGTCTCTTGG TCAAAACATA CAATAGATCC CAATGGTAAG TTAACTATAT 50166 |||| ||||| .......... .......... .......... ......ATCC CAATG..... .......... 269 TTTTGTATAT TTTTTAAATT TATTTTATTC TTATTATATA ATATAGGGAA AAAAGGATAA 50226 .......... .......... .......... .......... .......... .......... 269 ATATATCCCC GAACTATTAT AAATAGTATG CACCAGTATC CTCTGTTATA CTTTAGAGAC 50286 .......... .......... .......... .......... .......... .......... 269 ATTTTTGCCG TCAAAAAACT AGAACACATA TATCCTTTAT TTATCCCGAT ATCGAATCGA 50346 .......... .......... .......... .......... .......... .......... 269 TTGTACCACG AGTGAAGGGT ATAGCTCTAG TTTTTGGACG GTAGGGCACC TAAAGTATGA 50406 .......... .......... .......... .......... .......... .......... 269 CGAAGAATAT CTGCAAACCA TTTACAATAG TTTTGGATAT ATTTGTGAAC TAATGATGTT 50466 .......... .......... .......... .......... .......... .......... 269 TGAATTCTTT TTTCATAGCA CCAATGTATT TCAATGGAGT GTATCATCTA TTCTACCAGT 50526 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........CA CCAATGTATT TCAATGGAGT GTATCATCTA TTCTACCAGT 311 ACAACCCAAA TGGTTCAGTA TGGGGTAACA TTGTTTGGGC TCATTCCGTT TCAAAAGACT 50586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACCCAAA TGGTTCAGTA TGGGGTAACA TTGTTTGGGC TCATTCCGTT TCAAAAGACT 371 TGATCAATTG GATCAATTTA GAACCTGCAA TTTACCCATC AAAGCCATTT GATCAATTCG 50646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCAATTG GATCAATTTA GAACCTGCAA TTTACCCATC AAAGCCATTT GATCAATTCG 431 GTACCTGGTC TGGATCAGCA ACCATCCTAC CTGGTAACAA GCCAGTCATC TTGTACACCG 50706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCTGGTC TGGATCAGCA ACCATCCTAC CTGGTAACAA GCCAGTCATC TTGTACACCG 491 GAATCATAGA TGCCAACCAA ACCCAAGTCC AAAACTACGC AATCCCAGCT AACTTATCCG 50766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCATAGA TGCCAACCAA ACCCAAGTCC AAAACTACGC AATCCCAGCT AACTTATCCG 551 ATCCATATCT C 50777 |||||||||| | ATCCATATCT C 562 hqPGS_C09HBa0168F14.1-2+_SGN-E334092+ (49627 49886,50143 50151,50485 50777) ******************************************************************************** EST sequence 80 +strand 681 n (File: SGN-E333482+) 1 TTAAATATCA CTATCTGTCA AAGCCCAATC ATTAAAATAA AATAAAAATT ATGGATTATT 61 CATCTAATAA AAGTTCTCGT TGGGCTTTGC CAGTTATCTT AGTTTGCTTT TTTGTAATTT 121 TATTATCCAA TAATGTTGTT TTTGCTTCTC ATAAAGTTTT TATTCACTTG CAATCTCAAA 181 ATGCTGTAAA TGTTCATACT GTTCATCGAA CTGGTTATCA TTTTCAGCCC GAAAAACATT 241 GGATCAATGA TCCCAATGCA CCAATGTATT TCAATGGAGT GTATCATCTA TTCTACCAGT 301 ACAACCCAAA TGGTTCAGTA TGGGGTAACA TTGTTTGGGC TCATTCCGTT TCAAAAGACT 361 TGATCAATTG GATCAATTTA GAACCTGCAA TTTACCCATC AAAGCCATTT GATCAATTCG 421 GTACCTGGTC TGGATCAGCA ACCATCCTAC CTGGTAACAA GCCAGTCATC TTGTACACCG 481 GAATCATAGA TGCCAACCAA ACCCAAGTCC AAAACTACGC AATCCCAGCT AACTTATCCG 541 ATCCATATCT CCGCGAATGG ATCAAGCCAG ACAACAACCC ATTAATTATA GCCGATGAAA 601 GTATCAACAA GACCAAGTTT CGTGAACCAA CAACAGCATG GATGGGTAAA GACGGGCATT 661 GGAGAATCGT CATGGGAAGT T Predicted gene structure (within gDNA segment 49038 to 51517): Exon 1 49638 49886 ( 249 n); cDNA 1 249 ( 249 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 250 258 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50907 ( 423 n); cDNA 259 681 ( 423 n); score: 0.998 MATCH C09HBa0168F14.1-2+ SGN-E333482+ 0.999 681 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E333482+ (49638 49886,50143 50151,50485 50907) Alignment (genomic DNA sequence = upper lines): TTAAATATCA CTATCTGTCA AAGCCCAATC ATTAAAATAA AATAAAAATT ATGGATTATT 49697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAATATCA CTATCTGTCA AAGCCCAATC ATTAAAATAA AATAAAAATT ATGGATTATT 60 CATCTAATAA AAGTTCTCGT TGGGCTTTGC CAGTTATCTT AGTTTGCTTT TTTGTAATTT 49757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTAATAA AAGTTCTCGT TGGGCTTTGC CAGTTATCTT AGTTTGCTTT TTTGTAATTT 120 TATTATCCAA TAATGTTGTT TTTGCTTCTC ATAAAGTTTT TATTCACTTG CAATCTCAAA 49817 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTATCCAA TAATGTTGTT TTTGCTTCTC ATAAAGTTTT TATTCACTTG CAATCTCAAA 180 ATGCTGTAAA TGTTCATACT GTTCATCGAA CTGGTTATCA TTTTCAGCCC GAAAAACATT 49877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTGTAAA TGTTCATACT GTTCATCGAA CTGGTTATCA TTTTCAGCCC GAAAAACATT 240 GGATCAATGG TATGTTTATT CCTTTTTTTC GTCTTTTTTT TATATATATA TATAATAAAA 49937 ||||||||| GGATCAATG. .......... .......... .......... .......... .......... 249 CGAACATGTT GTGTTTAGTC TAGATTTAAT ACTAGTGATT TTTTTGACGC TAACAAATAA 49997 .......... .......... .......... .......... .......... .......... 249 TCGAGTACTC ACCATTTGTC AATAGATACA TTGACATGTA TTAGTATGAT TTTCGTCTTT 50057 .......... .......... .......... .......... .......... .......... 249 TTTCGTTGTT TCTAATATTA TTTAATCTTC ACTAATTTTT TTTATTTTTC TTTGAATGAT 50117 .......... .......... .......... .......... .......... .......... 249 GTCTCTTGGT CAAAACATAC AATAGATCCC AATGGTAAGT TAACTATATT TTTGTATATT 50177 ||||| |||| .......... .......... .....ATCCC AATG...... .......... .......... 258 TTTTAAATTT ATTTTATTCT TATTATATAA TATAGGGAAA AAAGGATAAA TATATCCCCG 50237 .......... .......... .......... .......... .......... .......... 258 AACTATTATA AATAGTATGC ACCAGTATCC TCTGTTATAC TTTAGAGACA TTTTTGCCGT 50297 .......... .......... .......... .......... .......... .......... 258 CAAAAAACTA GAACACATAT ATCCTTTATT TATCCCGATA TCGAATCGAT TGTACCACGA 50357 .......... .......... .......... .......... .......... .......... 258 GTGAAGGGTA TAGCTCTAGT TTTTGGACGG TAGGGCACCT AAAGTATGAC GAAGAATATC 50417 .......... .......... .......... .......... .......... .......... 258 TGCAAACCAT TTACAATAGT TTTGGATATA TTTGTGAACT AATGATGTTT GAATTCTTTT 50477 .......... .......... .......... .......... .......... .......... 258 TTCATAGCAC CAATGTATTT CAATGGAGTG TATCATCTAT TCTACCAGTA CAACCCAAAT 50537 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......CAC CAATGTATTT CAATGGAGTG TATCATCTAT TCTACCAGTA CAACCCAAAT 311 GGTTCAGTAT GGGGTAACAT TGTTTGGGCT CATTCCGTTT CAAAAGACTT GATCAATTGG 50597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCAGTAT GGGGTAACAT TGTTTGGGCT CATTCCGTTT CAAAAGACTT GATCAATTGG 371 ATCAATTTAG AACCTGCAAT TTACCCATCA AAGCCATTTG ATCAATTCGG TACCTGGTCT 50657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAATTTAG AACCTGCAAT TTACCCATCA AAGCCATTTG ATCAATTCGG TACCTGGTCT 431 GGATCAGCAA CCATCCTACC TGGTAACAAG CCAGTCATCT TGTACACCGG AATCATAGAT 50717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCAGCAA CCATCCTACC TGGTAACAAG CCAGTCATCT TGTACACCGG AATCATAGAT 491 GCCAACCAAA CCCAAGTCCA AAACTACGCA ATCCCAGCTA ACTTATCCGA TCCATATCTC 50777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAACCAAA CCCAAGTCCA AAACTACGCA ATCCCAGCTA ACTTATCCGA TCCATATCTC 551 CGCGAATGGA TCAAGCCAGA CAACAACCCA TTAATTATAG CCGATGAAAG TATCAACAAG 50837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCGAATGGA TCAAGCCAGA CAACAACCCA TTAATTATAG CCGATGAAAG TATCAACAAG 611 ACCAAGTTTC GTGACCCAAC AACAGCATGG ATGGGTAAAG ACGGGCATTG GAGAATCGTC 50897 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAGTTTC GTGAACCAAC AACAGCATGG ATGGGTAAAG ACGGGCATTG GAGAATCGTC 671 ATGGGAAGTT 50907 |||||||||| ATGGGAAGTT 681 hqPGS_C09HBa0168F14.1-2+_SGN-E333482+ (49638 49886,50143 50151,50485 50907) ******************************************************************************** EST sequence 2 +strand 673 n (File: SGN-E547397+) 1 CAAAGCCCAA TTATTAAAAT AAAATAAAAA TTATGGATTA TTCATCTAAT AAAAGTTCTC 61 GTTGGGCTTT GCCAGTTATC TTAGTTTGCT TTTTTGTAAT TTTATTATCC AATAATGTTG 121 TTTTTGCTTC TCATAAAGTT TTTATTCACT TGCAATCTCA AAATGCTGTA AATGTTCATA 181 CTGTTCATCG AACTGGTTAT CATTTTCAGC CCGAAAAACA TTGGATCAAT GGATGTCTCT 241 TGATCAAAAC ATACAATAGA TCCCAATGCA CCAATGTTAT TTCAATGGAG TCTATCATCT 301 ATTCTACCAG TACAACCCAA ATGGTTCAGT ATGGGGTAAC ATTGTTTGGG CTCATTCAGT 361 TTCAAAAGAC TTAATCAACT GGATCAATTT AGAACCTGCA ATTTACCCAT CAAAGCCATT 421 TGATCAATTC GGTACATGGT CTGGATCAGC AACAATCCTA CCTGGTAACA AGCCAGTCAT 481 CTTGTACACC GGAATCATAG ATGCCAACCA AACCCAAGTC CAAAACTACG CAATCCCAGC 541 TAACATATCC GATCCATATC TCCGCGAATG GATCAAGCCA GACAACAACC CACTAATTAT 601 AGCCGATGAA AGTATCAACA AGACGAAATT CCGTGACCCA ACAACAGCAT GGATGGGTAA 661 AGATGGACAT TGG Predicted gene structure (within gDNA segment 48885 to 51588): Exon 1 49656 49886 ( 231 n); cDNA 1 231 ( 231 n); score: 0.996 Intron 1 49887 50114 ( 228 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50115 50151 ( 37 n); cDNA 232 268 ( 37 n); score: 0.973 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 0.93) Exon 3 50485 50888 ( 404 n); cDNA 269 673 ( 405 n); score: 0.962 MATCH C09HBa0168F14.1-2+ SGN-E547397+ 0.974 672 0.999 C PGS_C09HBa0168F14.1-2+_SGN-E547397+ (49656 49886,50115 50151,50485 50888) Alignment (genomic DNA sequence = upper lines): CAAAGCCCAA TCATTAAAAT AAAATAAAAA TTATGGATTA TTCATCTAAT AAAAGTTCTC 49715 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGCCCAA TTATTAAAAT AAAATAAAAA TTATGGATTA TTCATCTAAT AAAAGTTCTC 60 GTTGGGCTTT GCCAGTTATC TTAGTTTGCT TTTTTGTAAT TTTATTATCC AATAATGTTG 49775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGGCTTT GCCAGTTATC TTAGTTTGCT TTTTTGTAAT TTTATTATCC AATAATGTTG 120 TTTTTGCTTC TCATAAAGTT TTTATTCACT TGCAATCTCA AAATGCTGTA AATGTTCATA 49835 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTGCTTC TCATAAAGTT TTTATTCACT TGCAATCTCA AAATGCTGTA AATGTTCATA 180 CTGTTCATCG AACTGGTTAT CATTTTCAGC CCGAAAAACA TTGGATCAAT GGTATGTTTA 49895 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CTGTTCATCG AACTGGTTAT CATTTTCAGC CCGAAAAACA TTGGATCAAT G......... 231 TTCCTTTTTT TCGTCTTTTT TTTATATATA TATATAATAA AACGAACATG TTGTGTTTAG 49955 .......... .......... .......... .......... .......... .......... 231 TCTAGATTTA ATACTAGTGA TTTTTTTGAC GCTAACAAAT AATCGAGTAC TCACCATTTG 50015 .......... .......... .......... .......... .......... .......... 231 TCAATAGATA CATTGACATG TATTAGTATG ATTTTCGTCT TTTTTCGTTG TTTCTAATAT 50075 .......... .......... .......... .......... .......... .......... 231 TATTTAATCT TCACTAATTT TTTTTATTTT TCTTTGAATG ATGTCTCTTG GTCAAAACAT 50135 | |||||||||| ||||||||| .......... .......... .......... .........G ATGTCTCTTG ATCAAAACAT 252 ACAATAGATC CCAATGGTAA GTTAACTATA TTTTTGTATA TTTTTTAAAT TTATTTTATT 50195 |||||||||| |||||| ACAATAGATC CCAATG.... .......... .......... .......... .......... 268 CTTATTATAT AATATAGGGA AAAAAGGATA AATATATCCC CGAACTATTA TAAATAGTAT 50255 .......... .......... .......... .......... .......... .......... 268 GCACCAGTAT CCTCTGTTAT ACTTTAGAGA CATTTTTGCC GTCAAAAAAC TAGAACACAT 50315 .......... .......... .......... .......... .......... .......... 268 ATATCCTTTA TTTATCCCGA TATCGAATCG ATTGTACCAC GAGTGAAGGG TATAGCTCTA 50375 .......... .......... .......... .......... .......... .......... 268 GTTTTTGGAC GGTAGGGCAC CTAAAGTATG ACGAAGAATA TCTGCAAACC ATTTACAATA 50435 .......... .......... .......... .......... .......... .......... 268 GTTTTGGATA TATTTGTGAA CTAATGATGT TTGAATTCTT TTTTCATAGC ACCAATG-TA 50494 | ||||||| || .......... .......... .......... .......... .........C ACCAATGTTA 279 TTTCAATGGA GTGTATCATC TATTCTACCA GTACAACCCA AATGGTTCAG TATGGGGTAA 50554 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAATGGA GTCTATCATC TATTCTACCA GTACAACCCA AATGGTTCAG TATGGGGTAA 339 CATTGTTTGG GCTCATTCCG TTTCAAAAGA CTTGATCAAT TGGATCAATT TAGAACCTGC 50614 |||||||||| |||||||| | |||||||||| ||| ||||| |||||||||| |||||||||| CATTGTTTGG GCTCATTCAG TTTCAAAAGA CTTAATCAAC TGGATCAATT TAGAACCTGC 399 AATTTACCCA TCAAAGCCAT TTGATCAATT CGGTACCTGG TCTGGATCAG CAACCATCCT 50674 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||| ||||| AATTTACCCA TCAAAGCCAT TTGATCAATT CGGTACATGG TCTGGATCAG CAACAATCCT 459 ACCTGGTAAC AAGCCAGTCA TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT 50734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTGGTAAC AAGCCAGTCA TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT 519 CCAAAACTAC GCAATCCCAG CTAACTTATC CGATCCATAT CTCCGCGAAT GGATCAAGCC 50794 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CCAAAACTAC GCAATCCCAG CTAACATATC CGATCCATAT CTCCGCGAAT GGATCAAGCC 579 AGACAACAAC CCATTAATTA TAGCCGATGA AAGTATCAAC AAGACCAAGT TTCGTGACCC 50854 |||||||||| ||| |||||| |||||||||| |||||||||| ||||| || | | |||||||| AGACAACAAC CCACTAATTA TAGCCGATGA AAGTATCAAC AAGACGAAAT TCCGTGACCC 639 AACAACAGCA TGGATGGGTA AAGACGGGCA TTGG 50888 |||||||||| |||||||||| |||| || || |||| AACAACAGCA TGGATGGGTA AAGATGGACA TTGG 673 hqPGS_C09HBa0168F14.1-2+_SGN-E547397+ (49656 49886,50115 50151,50485 50888) ******************************************************************************** EST sequence 1 +strand 624 n (File: SGN-E330542+) 1 TAAAATAAAA ATTATGGATT ATTCATCTAA TAAAAGTTCT CGTTGGGCTT TGCCAGTTAT 61 CTTAGTTTGC TTTTTTGTAA TTTTATTATC CAATAATGTT GTTTTTGCTT CTCATAAAGT 121 TTTTATTCAC TTGCAATCTC AAAATGCTGT AAATGTTCAT ACTGTTCATC GAACTGGTTA 181 TCATTTTCAG CCCGAAAAAC ATTGGATCAA TGATCCCAAT GCACCAATGT ATTTCAATGG 241 AGTGTATCAT CTATTCTACC AGTACAACCC AAATGGTTCA GTATGGGGTA ACATTGTTTG 301 GGCTCATTCC GTTTCAAAAG ACTTGATCAA TTGGATCAAT TTAGAACCTG CAATTTACCC 361 ATCAAAGCCA TTTGATCAAT TCGGTACCTG GTCTGGATCA GCAACCATCC TACCTGGTAA 421 CAAGCCAGTC ATCTTGTACA CCGGAATCAT AGATGCCAAC CAAACCCAAG TCCAAAACTA 481 CGCAATCCCA GCTAACTTAT CCGATCCATA TCTCCGCGAA TGGATCAAGC CAGACAACAA 541 CCCATTAATT ATAGCCGATG AAAGTATCAA CAAGACCAAG TTTCGTGACC CAACAACAGC 601 ATGGATGGGT AAAGACGGGC ATTG Predicted gene structure (within gDNA segment 49075 to 51497): Exon 1 49675 49886 ( 212 n); cDNA 1 212 ( 212 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 213 221 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 50887 ( 403 n); cDNA 222 624 ( 403 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E330542+ 1.000 624 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E330542+ (49675 49886,50143 50151,50485 50887) Alignment (genomic DNA sequence = upper lines): TAAAATAAAA ATTATGGATT ATTCATCTAA TAAAAGTTCT CGTTGGGCTT TGCCAGTTAT 49734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATAAAA ATTATGGATT ATTCATCTAA TAAAAGTTCT CGTTGGGCTT TGCCAGTTAT 60 CTTAGTTTGC TTTTTTGTAA TTTTATTATC CAATAATGTT GTTTTTGCTT CTCATAAAGT 49794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAGTTTGC TTTTTTGTAA TTTTATTATC CAATAATGTT GTTTTTGCTT CTCATAAAGT 120 TTTTATTCAC TTGCAATCTC AAAATGCTGT AAATGTTCAT ACTGTTCATC GAACTGGTTA 49854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTATTCAC TTGCAATCTC AAAATGCTGT AAATGTTCAT ACTGTTCATC GAACTGGTTA 180 TCATTTTCAG CCCGAAAAAC ATTGGATCAA TGGTATGTTT ATTCCTTTTT TTCGTCTTTT 49914 |||||||||| |||||||||| |||||||||| || TCATTTTCAG CCCGAAAAAC ATTGGATCAA TG........ .......... .......... 212 TTTTATATAT ATATATAATA AAACGAACAT GTTGTGTTTA GTCTAGATTT AATACTAGTG 49974 .......... .......... .......... .......... .......... .......... 212 ATTTTTTTGA CGCTAACAAA TAATCGAGTA CTCACCATTT GTCAATAGAT ACATTGACAT 50034 .......... .......... .......... .......... .......... .......... 212 GTATTAGTAT GATTTTCGTC TTTTTTCGTT GTTTCTAATA TTATTTAATC TTCACTAATT 50094 .......... .......... .......... .......... .......... .......... 212 TTTTTTATTT TTCTTTGAAT GATGTCTCTT GGTCAAAACA TACAATAGAT CCCAATGGTA 50154 || ||||||| .......... .......... .......... .......... ........AT CCCAATG... 221 AGTTAACTAT ATTTTTGTAT ATTTTTTAAA TTTATTTTAT TCTTATTATA TAATATAGGG 50214 .......... .......... .......... .......... .......... .......... 221 AAAAAAGGAT AAATATATCC CCGAACTATT ATAAATAGTA TGCACCAGTA TCCTCTGTTA 50274 .......... .......... .......... .......... .......... .......... 221 TACTTTAGAG ACATTTTTGC CGTCAAAAAA CTAGAACACA TATATCCTTT ATTTATCCCG 50334 .......... .......... .......... .......... .......... .......... 221 ATATCGAATC GATTGTACCA CGAGTGAAGG GTATAGCTCT AGTTTTTGGA CGGTAGGGCA 50394 .......... .......... .......... .......... .......... .......... 221 CCTAAAGTAT GACGAAGAAT ATCTGCAAAC CATTTACAAT AGTTTTGGAT ATATTTGTGA 50454 .......... .......... .......... .......... .......... .......... 221 ACTAATGATG TTTGAATTCT TTTTTCATAG CACCAATGTA TTTCAATGGA GTGTATCATC 50514 |||||||||| |||||||||| |||||||||| .......... .......... .......... CACCAATGTA TTTCAATGGA GTGTATCATC 251 TATTCTACCA GTACAACCCA AATGGTTCAG TATGGGGTAA CATTGTTTGG GCTCATTCCG 50574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCTACCA GTACAACCCA AATGGTTCAG TATGGGGTAA CATTGTTTGG GCTCATTCCG 311 TTTCAAAAGA CTTGATCAAT TGGATCAATT TAGAACCTGC AATTTACCCA TCAAAGCCAT 50634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCAAAAGA CTTGATCAAT TGGATCAATT TAGAACCTGC AATTTACCCA TCAAAGCCAT 371 TTGATCAATT CGGTACCTGG TCTGGATCAG CAACCATCCT ACCTGGTAAC AAGCCAGTCA 50694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCAATT CGGTACCTGG TCTGGATCAG CAACCATCCT ACCTGGTAAC AAGCCAGTCA 431 TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT CCAAAACTAC GCAATCCCAG 50754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT CCAAAACTAC GCAATCCCAG 491 CTAACTTATC CGATCCATAT CTCCGCGAAT GGATCAAGCC AGACAACAAC CCATTAATTA 50814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAACTTATC CGATCCATAT CTCCGCGAAT GGATCAAGCC AGACAACAAC CCATTAATTA 551 TAGCCGATGA AAGTATCAAC AAGACCAAGT TTCGTGACCC AACAACAGCA TGGATGGGTA 50874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCCGATGA AAGTATCAAC AAGACCAAGT TTCGTGACCC AACAACAGCA TGGATGGGTA 611 AAGACGGGCA TTG 50887 |||||||||| ||| AAGACGGGCA TTG 624 hqPGS_C09HBa0168F14.1-2+_SGN-E330542+ (49675 49886,50143 50151,50485 50887) ******************************************************************************** EST sequence 93 +strand 598 n (File: SGN-E334064+) 1 TTCATACTGT TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGATC 61 CCAATGCACC AATGTATTTC AATGGAGTGT ATCATCTATT CTACCAGTAC AACCCAAATG 121 GTTCAGTATG GGGTAACATT GTTTGGGCTC ATTCCGTTTC AAAAGACTTG ATCAATTGGA 181 TCAATTTAGA ACCTGCAATT TACCCATCAA AGCCATTTGA TCAATTCGGT ACCTGGTCTG 241 GATCAGCAAC CATCCTACCT GGTAACAAGC CAGTCATCTT GTACACCGGA ATCATAGATG 301 CCAACCAAAC CCAAGTCCAA AACTACGCAA TCCCAGCTAA CTTATCCGAT CCATATCTCC 361 GCGAATGGAT CAAGCCAGAC AACAACCCAT TAATTATAGC CGATGAAAGT ATCAACAAGA 421 CCAAGTTTCG TGACCCAACA ACAGCATGGA TGGGTAAAGA CGGGCATTGG AGAATCGTCA 481 TGGGAAGTTT GAGGAAACAC AGCAGGGGCT TAGCTATAAT GTATAGGAGC AAAGACTTTA 541 TGAAATGGGT CAAGGCTAAA CACCCACTTC ACTCAACTAA CGGCACTGGA AACTGGGA Predicted gene structure (within gDNA segment 49230 to 51626): Exon 1 49830 49886 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 50143 50151 ( 9 n); cDNA 58 66 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 (s: 0), Pa: 0.813 (s: 1.00) Exon 3 50485 51016 ( 532 n); cDNA 67 598 ( 532 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E334064+ 1.000 598 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E334064+ (49830 49886,50143 50151,50485 51016) Alignment (genomic DNA sequence = upper lines): TTCATACTGT TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATGGTA 49889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTCATACTGT TCATCGAACT GGTTATCATT TTCAGCCCGA AAAACATTGG ATCAATG... 57 TGTTTATTCC TTTTTTTCGT CTTTTTTTTA TATATATATA TAATAAAACG AACATGTTGT 49949 .......... .......... .......... .......... .......... .......... 57 GTTTAGTCTA GATTTAATAC TAGTGATTTT TTTGACGCTA ACAAATAATC GAGTACTCAC 50009 .......... .......... .......... .......... .......... .......... 57 CATTTGTCAA TAGATACATT GACATGTATT AGTATGATTT TCGTCTTTTT TCGTTGTTTC 50069 .......... .......... .......... .......... .......... .......... 57 TAATATTATT TAATCTTCAC TAATTTTTTT TATTTTTCTT TGAATGATGT CTCTTGGTCA 50129 .......... .......... .......... .......... .......... .......... 57 AAACATACAA TAGATCCCAA TGGTAAGTTA ACTATATTTT TGTATATTTT TTAAATTTAT 50189 ||||||| || .......... ...ATCCCAA TG........ .......... .......... .......... 66 TTTATTCTTA TTATATAATA TAGGGAAAAA AGGATAAATA TATCCCCGAA CTATTATAAA 50249 .......... .......... .......... .......... .......... .......... 66 TAGTATGCAC CAGTATCCTC TGTTATACTT TAGAGACATT TTTGCCGTCA AAAAACTAGA 50309 .......... .......... .......... .......... .......... .......... 66 ACACATATAT CCTTTATTTA TCCCGATATC GAATCGATTG TACCACGAGT GAAGGGTATA 50369 .......... .......... .......... .......... .......... .......... 66 GCTCTAGTTT TTGGACGGTA GGGCACCTAA AGTATGACGA AGAATATCTG CAAACCATTT 50429 .......... .......... .......... .......... .......... .......... 66 ACAATAGTTT TGGATATATT TGTGAACTAA TGATGTTTGA ATTCTTTTTT CATAGCACCA 50489 ||||| .......... .......... .......... .......... .......... .....CACCA 71 ATGTATTTCA ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG 50549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATTTCA ATGGAGTGTA TCATCTATTC TACCAGTACA ACCCAAATGG TTCAGTATGG 131 GGTAACATTG TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA 50609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAACATTG TTTGGGCTCA TTCCGTTTCA AAAGACTTGA TCAATTGGAT CAATTTAGAA 191 CCTGCAATTT ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC 50669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCAATTT ACCCATCAAA GCCATTTGAT CAATTCGGTA CCTGGTCTGG ATCAGCAACC 251 ATCCTACCTG GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC 50729 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTACCTG GTAACAAGCC AGTCATCTTG TACACCGGAA TCATAGATGC CAACCAAACC 311 CAAGTCCAAA ACTACGCAAT CCCAGCTAAC TTATCCGATC CATATCTCCG CGAATGGATC 50789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTCCAAA ACTACGCAAT CCCAGCTAAC TTATCCGATC CATATCTCCG CGAATGGATC 371 AAGCCAGACA ACAACCCATT AATTATAGCC GATGAAAGTA TCAACAAGAC CAAGTTTCGT 50849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCAGACA ACAACCCATT AATTATAGCC GATGAAAGTA TCAACAAGAC CAAGTTTCGT 431 GACCCAACAA CAGCATGGAT GGGTAAAGAC GGGCATTGGA GAATCGTCAT GGGAAGTTTG 50909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCAACAA CAGCATGGAT GGGTAAAGAC GGGCATTGGA GAATCGTCAT GGGAAGTTTG 491 AGGAAACACA GCAGGGGCTT AGCTATAATG TATAGGAGCA AAGACTTTAT GAAATGGGTC 50969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAACACA GCAGGGGCTT AGCTATAATG TATAGGAGCA AAGACTTTAT GAAATGGGTC 551 AAGGCTAAAC ACCCACTTCA CTCAACTAAC GGCACTGGAA ACTGGGA 51016 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AAGGCTAAAC ACCCACTTCA CTCAACTAAC GGCACTGGAA ACTGGGA 598 hqPGS_C09HBa0168F14.1-2+_SGN-E334064+ (49830 49886,50143 50151,50485 51016) ******************************************************************************** EST sequence 44 +strand 656 n (File: SGN-E373644+) 1 GATTTTTTCC CAGTTTCATT GAAAGGTACT AATGGGTTGG ATCAATACGG TGAAGAATAC 61 AAGTATGTGC TTAAGAACAG TATGGATCTT ACTCGATTTG AGTATTATAC ACTTGGAAAA 121 TACGATACAA AAAAAGATAG GTACGTTCCA GATCCAGATT CTGTTGATAG TTGGAAGGGA 181 TTGAGACTCG ATTATGGTAA CTTCTACGCA TCAAAGTCAT TCTATGATCC AAGCAAAAAT 241 CGAAGGGTTA TTTGGAGTTG GTCTAATGAA TCAGATATTT TTCCAGAGGA TGATAATGCG 301 AAGGGATGGG CTGGGATTCA ATTGATTCCT CGTAAAGTAT GGCTTGATCC AAGTGGTAAG 361 CAGTTGGTTC AATGGCCTGT TGAAGAATTA GAAACCCTAA GAACTCAAAA GGTTCAATTG 421 AGCAACAAGA AGATGAACAA TGGTGAAAAG ATTGAAGTGA CAGGAATCAC ACCAGCACAG 481 GCTGATGTTG AAGTGACATT CTCATTTGCA AGTTTGGATA AGGCAGAGTC ATTTGATCCT 541 AAATGGAATG ATATGTATGC ACAAGATGTT TGTGGACTCA AGGGTGCAGA TGTTCAAGGT 601 GGGCTTGGGC CATTTGGTCT TGCTACATTA GCCACCGAAA ACTTGGAAGA AAACAC Predicted gene structure (within gDNA segment 49776 to 53233): Exon 1 51024 51503 ( 480 n); cDNA 1 480 ( 480 n); score: 0.952 Intron 1 51504 52231 ( 728 n); Pd: 1.000 (s: 0.94), Pa: 0.982 (s: 1.00) Exon 2 52232 52407 ( 176 n); cDNA 481 656 ( 176 n); score: 0.989 MATCH C09HBa0168F14.1-2+ SGN-E373644+ 0.962 656 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E373644+ (51024 51503,52232 52407) Alignment (genomic DNA sequence = upper lines): GATTTTTACC CAGTTTCATC GAAAGGTACT GATGGGTTGG ATCAATACGG TGAGGAACAC 51083 ||||||| || ||||||||| |||||||||| ||||||||| |||||||||| ||| ||| || GATTTTTTCC CAGTTTCATT GAAAGGTACT AATGGGTTGG ATCAATACGG TGAAGAATAC 60 AAGTACGTGC TGAAGAACAG TATGGATCTT ACTCGATTTG AGTATTATAC ACTTGGAAAA 51143 ||||| |||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTATGTGC TTAAGAACAG TATGGATCTT ACTCGATTTG AGTATTATAC ACTTGGAAAA 120 TACGATACGA AAAAAGATAG GTACGTTCCA GATCCAGATT CTGTCGATAG TTTGAAGGGA 51203 |||||||| | |||||||||| |||||||||| |||||||||| |||| ||||| || ||||||| TACGATACAA AAAAAGATAG GTACGTTCCA GATCCAGATT CTGTTGATAG TTGGAAGGGA 180 TTGAGACTCG ATTACGGTAA CTTCTACGCA TCGAAGTCAT TCTACGATCC AAGCAAAAAT 51263 |||||||||| |||| ||||| |||||||||| || ||||||| |||| ||||| |||||||||| TTGAGACTCG ATTATGGTAA CTTCTACGCA TCAAAGTCAT TCTATGATCC AAGCAAAAAT 240 CGAAGGGTTA TCTGGGGTTG GTCTAATGAA TCAGATATAT TCCCAGAGGA TGATAATGCG 51323 |||||||||| | ||| |||| |||||||||| |||||||| | | |||||||| |||||||||| CGAAGGGTTA TTTGGAGTTG GTCTAATGAA TCAGATATTT TTCCAGAGGA TGATAATGCG 300 AAGGGATGGG CTGGGATTCA ATTGATTCCT CGTAAAGTAT GGCTTGATCC AAGTGGTAAG 51383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGGATGGG CTGGGATTCA ATTGATTCCT CGTAAAGTAT GGCTTGATCC AAGTGGTAAG 360 CAGTTGGTTC AATGGCCTGT GGAGGAACTA GAAACCCTAA GAACTCAAAA GGTTCAATTG 51443 |||||||||| |||||||||| || ||| || |||||||||| |||||||||| |||||||||| CAGTTGGTTC AATGGCCTGT TGAAGAATTA GAAACCCTAA GAACTCAAAA GGTTCAATTG 420 AGCAACAAGA AGATGAACAA TGGGGAGAAG ATTGAAGTTA CAGGAATCAC ACCAGCACAG 51503 |||||||||| |||||||||| ||| || ||| |||||||| | |||||||||| |||||||||| AGCAACAAGA AGATGAACAA TGGTGAAAAG ATTGAAGTGA CAGGAATCAC ACCAGCACAG 480 GTATATATAT AGACTTTTTT ATTTTTAATT TATTATTATT ATTATTATTA CTCTCTCCGT 51563 .......... .......... .......... .......... .......... .......... 480 TTTCAAAAAA AAAATATCCC TATTTTCTTT TATAGTCTCT TTAATTTAAA AAGAATGATC 51623 .......... .......... .......... .......... .......... .......... 480 TATTTTCTTT TTGGATAACC TTTTAACTTT GATTTTTCAC GTGAAATGTT TAAAATCACG 51683 .......... .......... .......... .......... .......... .......... 480 AGATTAAAGA GCATTTTGGT TACATTTGAC ATAACTGAAA TTTAGAAACA CAAGATTAAA 51743 .......... .......... .......... .......... .......... .......... 480 GGACATTTTG GTACATTTGA CATAACTTGA ATTTAAAACC ACATAATTAA AGGGCATTTT 51803 .......... .......... .......... .......... .......... .......... 480 GGTACATTTG AATTAGAACA TTTTGATACA TTTGACATAA CATGAATTTA GAACCACAAG 51863 .......... .......... .......... .......... .......... .......... 480 ATTAAAAAAT CTTCTTTCTT TTTTCTTAAA TTTCGTTCCA AGTCAAATTA GGTCATTCTT 51923 .......... .......... .......... .......... .......... .......... 480 TTTTAATTAC TCCCTCCGTC TAATTTTATG TAACAACATT TGACCGGACG GAGAGTTTTA 51983 .......... .......... .......... .......... .......... .......... 480 AGAAATAAAT AAAACACTTT GAGATGTGTA CCAAATTGCT CTCCAAAAAT ACTCACTTTT 52043 .......... .......... .......... .......... .......... .......... 480 CTCTCTCCTC ATAAATGTAT TTGAGTACTA TTTTTAAAAT TAAGCGAGTC CAACAAGAAT 52103 .......... .......... .......... .......... .......... .......... 480 AAAATAGAAA CTGTACTTTT AAATATTTAC CATATAAAAA AATGTGATTT TTTTTTTTTG 52163 .......... .......... .......... .......... .......... .......... 480 AAAACTGATC AAAAAGAAAA TGATATCACT CGACGATGAA AGTGTTTAAT AATGAAAAAA 52223 .......... .......... .......... .......... .......... .......... 480 CATGACAGGC TGATGTTGAA GTGACATTCT CATTTGCAAG TTTGGATAAG GCAGAGTCAT 52283 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GC TGATGTTGAA GTGACATTCT CATTTGCAAG TTTGGATAAG GCAGAGTCAT 532 TTGATCCTAA ATGGAATGAT ATGTATGCAC AAGATGTTTG TGGACTCAAG GGTGCAGATG 52343 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATCCTAA ATGGAATGAT ATGTATGCAC AAGATGTTTG TGGACTCAAG GGTGCAGATG 592 TTCAAGGTGG GCTTGGGCCA TTTGGTCTTG CTACATTAGC TACTGAAAAC TTGGAAGAAA 52403 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| |||||||||| TTCAAGGTGG GCTTGGGCCA TTTGGTCTTG CTACATTAGC CACCGAAAAC TTGGAAGAAA 652 ACAC 52407 |||| ACAC 656 hqPGS_C09HBa0168F14.1-2+_SGN-E373644+ (51024 51503,52232 52407) ******************************************************************************** EST sequence 105 +strand 587 n (File: SGN-E329978+) 1 AAGATAGGTA CGTTCCAGAT CCAGATTCTG TCGATAGTTT GAAGGGATTG AGACTCGATT 61 ACGGTAACTT CTACGCATCG AAGTCATTCT ACGATCCAAG CAAAAATCGA AGGGTTATCT 121 GGGGTTGGTC TAATGAATCA GATATATTCC CAGAGGATGA TAATGCGAAG GGATGGGCTG 181 GGATTCAATT GATTCCTCGT AAAGTATGGC TTGATCCAAG TGGTAAGCAG TTGGTTCAAT 241 GGCCTGTGGA GGAACTAGAA ACCCTAAGAA CTCAAAAGGT TCAATTGAGC AACAAGAAGA 301 TGAACAATGG GGAGAAGATT GAAGTTACAG GAATCACACC AGCACAGGCT GATGTTGAAG 361 TGACATTCTC ATTTGCAAGT TTGGATAAGG CAGAGTCATT TGATCCTAAA TGGAATGATA 421 TGTATGCACA AGATGTTTGT GGACTCAAGG GTGCAGATGT TCAAGGTGGG CTTGGGCCAT 481 TTGGTCTTGC TACATTAGCT ACTGAAAACT TGGAAGAAAA CACACCGGTT TTCTTCCGAG 541 TTTTCAAAGC ACAGCAAAAC TACAAAGTTC TCTTGTGTTC TGACGCT Predicted gene structure (within gDNA segment 50557 to 53081): Exon 1 51157 51503 ( 347 n); cDNA 1 347 ( 347 n); score: 1.000 Intron 1 51504 52231 ( 728 n); Pd: 1.000 (s: 1.00), Pa: 0.982 (s: 1.00) Exon 2 52232 52471 ( 240 n); cDNA 348 587 ( 240 n); score: 0.996 MATCH C09HBa0168F14.1-2+ SGN-E329978+ 0.998 587 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E329978+ (51157 51503,52232 52471) Alignment (genomic DNA sequence = upper lines): AAGATAGGTA CGTTCCAGAT CCAGATTCTG TCGATAGTTT GAAGGGATTG AGACTCGATT 51216 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATAGGTA CGTTCCAGAT CCAGATTCTG TCGATAGTTT GAAGGGATTG AGACTCGATT 60 ACGGTAACTT CTACGCATCG AAGTCATTCT ACGATCCAAG CAAAAATCGA AGGGTTATCT 51276 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTAACTT CTACGCATCG AAGTCATTCT ACGATCCAAG CAAAAATCGA AGGGTTATCT 120 GGGGTTGGTC TAATGAATCA GATATATTCC CAGAGGATGA TAATGCGAAG GGATGGGCTG 51336 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTTGGTC TAATGAATCA GATATATTCC CAGAGGATGA TAATGCGAAG GGATGGGCTG 180 GGATTCAATT GATTCCTCGT AAAGTATGGC TTGATCCAAG TGGTAAGCAG TTGGTTCAAT 51396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATTCAATT GATTCCTCGT AAAGTATGGC TTGATCCAAG TGGTAAGCAG TTGGTTCAAT 240 GGCCTGTGGA GGAACTAGAA ACCCTAAGAA CTCAAAAGGT TCAATTGAGC AACAAGAAGA 51456 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCTGTGGA GGAACTAGAA ACCCTAAGAA CTCAAAAGGT TCAATTGAGC AACAAGAAGA 300 TGAACAATGG GGAGAAGATT GAAGTTACAG GAATCACACC AGCACAGGTA TATATATAGA 51516 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGAACAATGG GGAGAAGATT GAAGTTACAG GAATCACACC AGCACAG... .......... 347 CTTTTTTATT TTTAATTTAT TATTATTATT ATTATTACTC TCTCCGTTTT CAAAAAAAAA 51576 .......... .......... .......... .......... .......... .......... 347 ATATCCCTAT TTTCTTTTAT AGTCTCTTTA ATTTAAAAAG AATGATCTAT TTTCTTTTTG 51636 .......... .......... .......... .......... .......... .......... 347 GATAACCTTT TAACTTTGAT TTTTCACGTG AAATGTTTAA AATCACGAGA TTAAAGAGCA 51696 .......... .......... .......... .......... .......... .......... 347 TTTTGGTTAC ATTTGACATA ACTGAAATTT AGAAACACAA GATTAAAGGA CATTTTGGTA 51756 .......... .......... .......... .......... .......... .......... 347 CATTTGACAT AACTTGAATT TAAAACCACA TAATTAAAGG GCATTTTGGT ACATTTGAAT 51816 .......... .......... .......... .......... .......... .......... 347 TAGAACATTT TGATACATTT GACATAACAT GAATTTAGAA CCACAAGATT AAAAAATCTT 51876 .......... .......... .......... .......... .......... .......... 347 CTTTCTTTTT TCTTAAATTT CGTTCCAAGT CAAATTAGGT CATTCTTTTT TAATTACTCC 51936 .......... .......... .......... .......... .......... .......... 347 CTCCGTCTAA TTTTATGTAA CAACATTTGA CCGGACGGAG AGTTTTAAGA AATAAATAAA 51996 .......... .......... .......... .......... .......... .......... 347 ACACTTTGAG ATGTGTACCA AATTGCTCTC CAAAAATACT CACTTTTCTC TCTCCTCATA 52056 .......... .......... .......... .......... .......... .......... 347 AATGTATTTG AGTACTATTT TTAAAATTAA GCGAGTCCAA CAAGAATAAA ATAGAAACTG 52116 .......... .......... .......... .......... .......... .......... 347 TACTTTTAAA TATTTACCAT ATAAAAAAAT GTGATTTTTT TTTTTTGAAA ACTGATCAAA 52176 .......... .......... .......... .......... .......... .......... 347 AAGAAAATGA TATCACTCGA CGATGAAAGT GTTTAATAAT GAAAAAACAT GACAGGCTGA 52236 ||||| .......... .......... .......... .......... .......... .....GCTGA 352 TGTTGAAGTG ACATTCTCAT TTGCAAGTTT GGATAAGGCA GAGTCATTTG ATCCTAAATG 52296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGAAGTG ACATTCTCAT TTGCAAGTTT GGATAAGGCA GAGTCATTTG ATCCTAAATG 412 GAATGATATG TATGCACAAG ATGTTTGTGG ACTCAAGGGT GCAGATGTTC AAGGTGGGCT 52356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGATATG TATGCACAAG ATGTTTGTGG ACTCAAGGGT GCAGATGTTC AAGGTGGGCT 472 TGGGCCATTT GGTCTTGCTA CATTAGCTAC TGAAAACTTG GAAGAAAACA CACCGGTTTT 52416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCCATTT GGTCTTGCTA CATTAGCTAC TGAAAACTTG GAAGAAAACA CACCGGTTTT 532 CTTCCGAGTT TTCAAAGCAC AGCAAAACTA CAAGGTTCTC TTGTGTTCTG ACGCT 52471 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||| CTTCCGAGTT TTCAAAGCAC AGCAAAACTA CAAAGTTCTC TTGTGTTCTG ACGCT 587 hqPGS_C09HBa0168F14.1-2+_SGN-E329978+ (51157 51503,52232 52471) ******************************************************************************** EST sequence 250 -strand 789 n (File: SGN-E546910-) 1 ATGATCCAAG CAAAAATCGA AGGGTATTTG GAGTTGGTCT AATGAATCAG ATATTTTTCC 61 AGAGGATGAT AATGCGAAGG GATGGGCTGG GATTCAATTG ATTCCTCGTA AAGTATGGCT 121 TGATCCAAGT GGTAAGCAGT TGGTTCAATG GCCTGTTGAA GAATTAGAAA CCCTAAGAAC 181 TCAAAAGGTT CAATTGAGCA ACAAGAAGAT GAACAATGGT GAAAAGATTG AAGTGACAGG 241 AATCACACCA GCACAGGCTG ATGTTGAAGT GACATTCTCA TTTGCAAGTT TGGATAAGGC 301 AGAGTCATTT GATCCTAAAT GGAATGATAT GTATGCACAA GATGTTTGTG GACTCAAGGG 361 TGCAGATGTT CAAGGTGGGC TTGGGCCATT TGGTCTTGCT ACATTAGCCA CTGAAAACTT 421 GGAAGAAAAC ACACCTGTTT TCTTCCGAGT TTTCAAAGCA CAACAAAACT ACAAGGTTCT 481 CTTGTGCTCT GACGCTAAAA GGTCAACTCT TAAGTTCAAT GAAACAATGT ACAAAGTTTC 541 ATTTGCTGGA TTTGTTGATG TTGATTTGGC TGACAAGAAA TTGTCACTCA GAAGCTTGAT 601 TGATAATTCA GTTATAGAAA CTTTTGGTGC TCGTGGAAAG ACATGTATAA CATCGAGGGT 661 TTATCCAACA TTGGCAATTA ACGACAAGGC ACATTTATTC GCGTTCAACA ACGGAACGGA 721 GCCAATCACA ATTGAGAGTT TGGATGCATG GAGTATGGGC AAAGCTAAGA TACAATATGA 781 AAAAAAAAA Predicted gene structure (within gDNA segment 50619 to 53636): Exon 1 51249 51503 ( 255 n); cDNA 3 256 ( 254 n); score: 0.957 Intron 1 51504 52231 ( 728 n); Pd: 1.000 (s: 0.94), Pa: 0.982 (s: 1.00) Exon 2 52232 52476 ( 245 n); cDNA 257 501 ( 245 n); score: 0.984 Intron 2 52477 52574 ( 98 n); Pd: 0.981 (s: 0.96), Pa: 0.951 (s: 0.98) Exon 3 52575 52671 ( 97 n); cDNA 502 598 ( 97 n); score: 0.990 Intron 3 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 0.98) Exon 4 52747 52938 ( 192 n); cDNA 599 789 ( 191 n); score: 0.974 MATCH C09HBa0168F14.1-2+ SGN-E546910- 0.973 789 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E546910- (51249 51503,52232 52476,52575 52671,52747 52938) Alignment (genomic DNA sequence = upper lines): GATCCAAGCA AAAATCGAAG GGTTATCTGG GGTTGGTCTA ATGAATCAGA TATATTCCCA 51308 |||||||||| |||||||||| || ||| ||| ||||||||| |||||||||| ||| || ||| GATCCAAGCA AAAATCGAAG GG-TATTTGG AGTTGGTCTA ATGAATCAGA TATTTTTCCA 61 GAGGATGATA ATGCGAAGGG ATGGGCTGGG ATTCAATTGA TTCCTCGTAA AGTATGGCTT 51368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGATGATA ATGCGAAGGG ATGGGCTGGG ATTCAATTGA TTCCTCGTAA AGTATGGCTT 121 GATCCAAGTG GTAAGCAGTT GGTTCAATGG CCTGTGGAGG AACTAGAAAC CCTAAGAACT 51428 |||||||||| |||||||||| |||||||||| ||||| || | || ||||||| |||||||||| GATCCAAGTG GTAAGCAGTT GGTTCAATGG CCTGTTGAAG AATTAGAAAC CCTAAGAACT 181 CAAAAGGTTC AATTGAGCAA CAAGAAGATG AACAATGGGG AGAAGATTGA AGTTACAGGA 51488 |||||||||| |||||||||| |||||||||| |||||||| | | |||||||| ||| |||||| CAAAAGGTTC AATTGAGCAA CAAGAAGATG AACAATGGTG AAAAGATTGA AGTGACAGGA 241 ATCACACCAG CACAGGTATA TATATAGACT TTTTTATTTT TAATTTATTA TTATTATTAT 51548 |||||||||| ||||| ATCACACCAG CACAG..... .......... .......... .......... .......... 256 TATTACTCTC TCCGTTTTCA AAAAAAAAAT ATCCCTATTT TCTTTTATAG TCTCTTTAAT 51608 .......... .......... .......... .......... .......... .......... 256 TTAAAAAGAA TGATCTATTT TCTTTTTGGA TAACCTTTTA ACTTTGATTT TTCACGTGAA 51668 .......... .......... .......... .......... .......... .......... 256 ATGTTTAAAA TCACGAGATT AAAGAGCATT TTGGTTACAT TTGACATAAC TGAAATTTAG 51728 .......... .......... .......... .......... .......... .......... 256 AAACACAAGA TTAAAGGACA TTTTGGTACA TTTGACATAA CTTGAATTTA AAACCACATA 51788 .......... .......... .......... .......... .......... .......... 256 ATTAAAGGGC ATTTTGGTAC ATTTGAATTA GAACATTTTG ATACATTTGA CATAACATGA 51848 .......... .......... .......... .......... .......... .......... 256 ATTTAGAACC ACAAGATTAA AAAATCTTCT TTCTTTTTTC TTAAATTTCG TTCCAAGTCA 51908 .......... .......... .......... .......... .......... .......... 256 AATTAGGTCA TTCTTTTTTA ATTACTCCCT CCGTCTAATT TTATGTAACA ACATTTGACC 51968 .......... .......... .......... .......... .......... .......... 256 GGACGGAGAG TTTTAAGAAA TAAATAAAAC ACTTTGAGAT GTGTACCAAA TTGCTCTCCA 52028 .......... .......... .......... .......... .......... .......... 256 AAAATACTCA CTTTTCTCTC TCCTCATAAA TGTATTTGAG TACTATTTTT AAAATTAAGC 52088 .......... .......... .......... .......... .......... .......... 256 GAGTCCAACA AGAATAAAAT AGAAACTGTA CTTTTAAATA TTTACCATAT AAAAAAATGT 52148 .......... .......... .......... .......... .......... .......... 256 GATTTTTTTT TTTTGAAAAC TGATCAAAAA GAAAATGATA TCACTCGACG ATGAAAGTGT 52208 .......... .......... .......... .......... .......... .......... 256 TTAATAATGA AAAAACATGA CAGGCTGATG TTGAAGTGAC ATTCTCATTT GCAAGTTTGG 52268 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GCTGATG TTGAAGTGAC ATTCTCATTT GCAAGTTTGG 293 ATAAGGCAGA GTCATTTGAT CCTAAATGGA ATGATATGTA TGCACAAGAT GTTTGTGGAC 52328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGGCAGA GTCATTTGAT CCTAAATGGA ATGATATGTA TGCACAAGAT GTTTGTGGAC 353 TCAAGGGTGC AGATGTTCAA GGTGGGCTTG GGCCATTTGG TCTTGCTACA TTAGCTACTG 52388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TCAAGGGTGC AGATGTTCAA GGTGGGCTTG GGCCATTTGG TCTTGCTACA TTAGCCACTG 413 AAAACTTGGA AGAAAACACA CCGGTTTTCT TCCGAGTTTT CAAAGCACAG CAAAACTACA 52448 |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| AAAACTTGGA AGAAAACACA CCTGTTTTCT TCCGAGTTTT CAAAGCACAA CAAAACTACA 473 AGGTTCTCTT GTGTTCTGAC GCTAAAAGGT ACTACTTATT GAATTTTTAA CTTGTTGGTA 52508 |||||||||| ||| |||||| |||||||| AGGTTCTCTT GTGCTCTGAC GCTAAAAG.. .......... .......... .......... 501 ACGTTTTCGA CGGTATAATA TCGAGAAGTT GAGAAATTGA CAAATCTTTT GTTTTATGTC 52568 .......... .......... .......... .......... .......... .......... 501 TGATAGGTCA ACTCTTAAGT TCAATGAAAC AATGTACAAA GCTTCATTTG CTGGATTTGT 52628 |||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ......GTCA ACTCTTAAGT TCAATGAAAC AATGTACAAA GTTTCATTTG CTGGATTTGT 555 TGATGTTGAT TTGGCTGACA AGAAATTGTC ACTCAGAAGC TTGGTAACTT CTCTTTCTAT 52688 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGATGTTGAT TTGGCTGACA AGAAATTGTC ACTCAGAAGC TTG....... .......... 598 CGTTAATCAA AAATCTAAAC GAACATTTGA ATCTAAACTA TTGAAATTCT TTTTGTAGAT 52748 || .......... .......... .......... .......... .......... ........AT 600 TGATAATTCA GTTATAGAAA CTTTTGGTGC TGGTGGAAAG ACATGTATAA CATCGAGGGT 52808 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TGATAATTCA GTTATAGAAA CTTTTGGTGC TCGTGGAAAG ACATGTATAA CATCGAGGGT 660 TTATCCAACA TTGGCAATTA ACGACGAGGC ACATTTATTC GCGTTTAACA ACGGAACGGA 52868 |||||||||| |||||||||| ||||| |||| |||||||||| ||||| |||| |||||||||| TTATCCAACA TTGGCAATTA ACGACAAGGC ACATTTATTC GCGTTCAACA ACGGAACGGA 720 GCCAATCACA ATTGAGAGTT TGGATGCATG GAGTATGGGC AAAGCTAAGA TACAATATTG 52928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GCCAATCACA ATTGAGAGTT TGGATGCATG GAGTATGGGC AAAGCTAAGA TACAATA-TG 779 AAGAAAAAAA 52938 || ||||||| AAAAAAAAAA 789 hqPGS_C09HBa0168F14.1-2+_SGN-E546910- (51249 51503,52232 52476,52575 52671,52747 52938) ******************************************************************************** EST sequence 120 -strand 782 n (File: SGN-E547396-) 1 TTGGTCTAAT GAATCAGATA TTTTTCCAGA GGATGATAAT GCGAAGGGAT GGGCTGGGAT 61 TCAATTGATT CCTCGTAAAG TATGGCTTGA TCCAAGTGGT AAGCAGTTGG TTCAATGGCC 121 TGTTGAAGAA TTAGAAACCC TAAGAACTCA AAAGGTTCAA TTGAGCAACA AGAAGATGAA 181 CAATGGTGAA AAGATTGAAG TGACAGGAAT CACACCAGCA CAGGCTGATG TTGAAGTGAC 241 ATTCTCATTT GCAAGTTTGG ATAAGGCAGA GTCATTTGAT CCTAAATGGA ATGATATGTA 301 TGCACAAGAT GTTTGTGGAC TCAAGGGTGC AGATGTTCAA GGTGGGCTTG GGCCATTTGG 361 TCTTGCTACA TTAGCCACTG AAAACTTGGA AGAAAACACA CCTGTTTTCT TCCGAGTTTT 421 CAAAGCACAA CAAAACTACA AGGTTCTCTT GTGCTCTGAC GCTAAAAGGT CAACTCTTAA 481 GTTCAATGAA ACAATGTACA AAGTTTCATT TGCTGGATTT GTTGATGTTG ATTTGGCTGA 541 CAAGAAATTG TCACTCAGAA GCTTGATTGA TAATTCAGTT ATAGAAACTT TTGGTGCTCG 601 TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACATTG GCAATTAACG ACAAGGCACA 661 TTTATTCGCG TTCAACAACG GAACGGAGCC AATCACAATT GAGAGTTTGG ATGCATGGAG 721 TATGGGCAAA GCTAAGATAC AATATGAAAG AAAAAAAAAA AAAAAAAACT CGAGGGGGGC 781 CC Predicted gene structure (within gDNA segment 50446 to 53896): Exon 1 51281 51503 ( 223 n); cDNA 1 223 ( 223 n); score: 0.964 Intron 1 51504 52231 ( 728 n); Pd: 1.000 (s: 0.94), Pa: 0.982 (s: 1.00) Exon 2 52232 52476 ( 245 n); cDNA 224 468 ( 245 n); score: 0.984 Intron 2 52477 52574 ( 98 n); Pd: 0.981 (s: 0.96), Pa: 0.951 (s: 0.98) Exon 3 52575 52671 ( 97 n); cDNA 469 565 ( 97 n); score: 0.990 Intron 3 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 0.98) Exon 4 52747 52941 ( 195 n); cDNA 566 760 ( 195 n); score: 0.974 MATCH C09HBa0168F14.1-2+ SGN-E547396- 0.976 760 0.972 C PGS_C09HBa0168F14.1-2+_SGN-E547396- (51281 51503,52232 52476,52575 52671,52747 52941) Alignment (genomic DNA sequence = upper lines): TTGGTCTAAT GAATCAGATA TATTCCCAGA GGATGATAAT GCGAAGGGAT GGGCTGGGAT 51340 |||||||||| |||||||||| | || ||||| |||||||||| |||||||||| |||||||||| TTGGTCTAAT GAATCAGATA TTTTTCCAGA GGATGATAAT GCGAAGGGAT GGGCTGGGAT 60 TCAATTGATT CCTCGTAAAG TATGGCTTGA TCCAAGTGGT AAGCAGTTGG TTCAATGGCC 51400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTGATT CCTCGTAAAG TATGGCTTGA TCCAAGTGGT AAGCAGTTGG TTCAATGGCC 120 TGTGGAGGAA CTAGAAACCC TAAGAACTCA AAAGGTTCAA TTGAGCAACA AGAAGATGAA 51460 ||| || ||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGAAGAA TTAGAAACCC TAAGAACTCA AAAGGTTCAA TTGAGCAACA AGAAGATGAA 180 CAATGGGGAG AAGATTGAAG TTACAGGAAT CACACCAGCA CAGGTATATA TATAGACTTT 51520 |||||| || |||||||||| | |||||||| |||||||||| ||| CAATGGTGAA AAGATTGAAG TGACAGGAAT CACACCAGCA CAG....... .......... 223 TTTATTTTTA ATTTATTATT ATTATTATTA TTACTCTCTC CGTTTTCAAA AAAAAAATAT 51580 .......... .......... .......... .......... .......... .......... 223 CCCTATTTTC TTTTATAGTC TCTTTAATTT AAAAAGAATG ATCTATTTTC TTTTTGGATA 51640 .......... .......... .......... .......... .......... .......... 223 ACCTTTTAAC TTTGATTTTT CACGTGAAAT GTTTAAAATC ACGAGATTAA AGAGCATTTT 51700 .......... .......... .......... .......... .......... .......... 223 GGTTACATTT GACATAACTG AAATTTAGAA ACACAAGATT AAAGGACATT TTGGTACATT 51760 .......... .......... .......... .......... .......... .......... 223 TGACATAACT TGAATTTAAA ACCACATAAT TAAAGGGCAT TTTGGTACAT TTGAATTAGA 51820 .......... .......... .......... .......... .......... .......... 223 ACATTTTGAT ACATTTGACA TAACATGAAT TTAGAACCAC AAGATTAAAA AATCTTCTTT 51880 .......... .......... .......... .......... .......... .......... 223 CTTTTTTCTT AAATTTCGTT CCAAGTCAAA TTAGGTCATT CTTTTTTAAT TACTCCCTCC 51940 .......... .......... .......... .......... .......... .......... 223 GTCTAATTTT ATGTAACAAC ATTTGACCGG ACGGAGAGTT TTAAGAAATA AATAAAACAC 52000 .......... .......... .......... .......... .......... .......... 223 TTTGAGATGT GTACCAAATT GCTCTCCAAA AATACTCACT TTTCTCTCTC CTCATAAATG 52060 .......... .......... .......... .......... .......... .......... 223 TATTTGAGTA CTATTTTTAA AATTAAGCGA GTCCAACAAG AATAAAATAG AAACTGTACT 52120 .......... .......... .......... .......... .......... .......... 223 TTTAAATATT TACCATATAA AAAAATGTGA TTTTTTTTTT TTGAAAACTG ATCAAAAAGA 52180 .......... .......... .......... .......... .......... .......... 223 AAATGATATC ACTCGACGAT GAAAGTGTTT AATAATGAAA AAACATGACA GGCTGATGTT 52240 ||||||||| .......... .......... .......... .......... .......... .GCTGATGTT 232 GAAGTGACAT TCTCATTTGC AAGTTTGGAT AAGGCAGAGT CATTTGATCC TAAATGGAAT 52300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTGACAT TCTCATTTGC AAGTTTGGAT AAGGCAGAGT CATTTGATCC TAAATGGAAT 292 GATATGTATG CACAAGATGT TTGTGGACTC AAGGGTGCAG ATGTTCAAGG TGGGCTTGGG 52360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATGTATG CACAAGATGT TTGTGGACTC AAGGGTGCAG ATGTTCAAGG TGGGCTTGGG 352 CCATTTGGTC TTGCTACATT AGCTACTGAA AACTTGGAAG AAAACACACC GGTTTTCTTC 52420 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| CCATTTGGTC TTGCTACATT AGCCACTGAA AACTTGGAAG AAAACACACC TGTTTTCTTC 412 CGAGTTTTCA AAGCACAGCA AAACTACAAG GTTCTCTTGT GTTCTGACGC TAAAAGGTAC 52480 |||||||||| ||||||| || |||||||||| |||||||||| | |||||||| |||||| CGAGTTTTCA AAGCACAACA AAACTACAAG GTTCTCTTGT GCTCTGACGC TAAAAG.... 468 TACTTATTGA ATTTTTAACT TGTTGGTAAC GTTTTCGACG GTATAATATC GAGAAGTTGA 52540 .......... .......... .......... .......... .......... .......... 468 GAAATTGACA AATCTTTTGT TTTATGTCTG ATAGGTCAAC TCTTAAGTTC AATGAAACAA 52600 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTCAAC TCTTAAGTTC AATGAAACAA 494 TGTACAAAGC TTCATTTGCT GGATTTGTTG ATGTTGATTT GGCTGACAAG AAATTGTCAC 52660 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACAAAGT TTCATTTGCT GGATTTGTTG ATGTTGATTT GGCTGACAAG AAATTGTCAC 554 TCAGAAGCTT GGTAACTTCT CTTTCTATCG TTAATCAAAA ATCTAAACGA ACATTTGAAT 52720 |||||||||| | TCAGAAGCTT G......... .......... .......... .......... .......... 565 CTAAACTATT GAAATTCTTT TTGTAGATTG ATAATTCAGT TATAGAAACT TTTGGTGCTG 52780 |||| |||||||||| |||||||||| ||||||||| .......... .......... ......ATTG ATAATTCAGT TATAGAAACT TTTGGTGCTC 599 GTGGAAAGAC ATGTATAACA TCGAGGGTTT ATCCAACATT GGCAATTAAC GACGAGGCAC 52840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| GTGGAAAGAC ATGTATAACA TCGAGGGTTT ATCCAACATT GGCAATTAAC GACAAGGCAC 659 ATTTATTCGC GTTTAACAAC GGAACGGAGC CAATCACAAT TGAGAGTTTG GATGCATGGA 52900 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTATTCGC GTTCAACAAC GGAACGGAGC CAATCACAAT TGAGAGTTTG GATGCATGGA 719 GTATGGGCAA AGCTAAGATA CAATATTGAA GAAAAAAAAA A 52941 |||||||||| |||||||||| |||||| || |||||||||| | GTATGGGCAA AGCTAAGATA CAATATGAAA GAAAAAAAAA A 760 hqPGS_C09HBa0168F14.1-2+_SGN-E547396- (51281 51503,52232 52476,52575 52671,52747 52941) ******************************************************************************** EST sequence 172 -strand 680 n (File: SGN-E373643-) 1 TAAAGTATGG CTTGATCCAA GTGGTAAGCA GTTGGTTCAA TGGCCTGTTG AAGAATTAGA 61 AACCCTAAGA ACTCAAAAGG TTCAATTGAG CAACAAGAAG ATGAACAATG GTGAAAAGAT 121 TGAAGTGACA GGAATCACAC CAGCACAGGC TGATGTTGAA GTGACATTCT CATTTGCAAG 181 TTTGGATAAG GCAGAGTCAT TTGATCCTAA ATGGAATGAT ATGTATGCAC AAGATGTTTG 241 TGGACTCAAG GGTGCAGATG TTCAAGGTGG GCTTGGGCCA TTTGGTCTTG CTACATTAGC 301 CACCGAAAAC TTGGAAGAAA ACACACCTGT TTTCTTCCGA GTTTTCAAAG CACAACAAAA 361 CTACAAGGTT CTCTTGTGCT CTGACGCTAA AAGGTCAACT CTTAAGTTCA ATGAAACAAT 421 GTACAAAGTT TCATTTGCTG GATTTGTTGA TGTTGATTTG GCTGACAAGA AATTGTCACT 481 CAGAAGCTTG ATTGATAATT CAGTTATAGA AACTTTTGGT GCTCGTGGAA AGACATGTAT 541 AACATCGAGG GTTTATCCAA CATTGGCAAT TAACGACAAG GCACATTTAT TCGCGTTCAA 601 CAACGGAACG GAGCCAATCA CAATTGAGAG TTTGGATGCA TGGAGTATGG GCAAAGCTAA 661 GATACAATAT TAAAAAAAAA Predicted gene structure (within gDNA segment 50746 to 53617): Exon 1 51356 51503 ( 148 n); cDNA 1 148 ( 148 n); score: 0.959 Intron 1 51504 52231 ( 728 n); Pd: 1.000 (s: 0.94), Pa: 0.982 (s: 1.00) Exon 2 52232 52476 ( 245 n); cDNA 149 393 ( 245 n); score: 0.980 Intron 2 52477 52574 ( 98 n); Pd: 0.981 (s: 0.96), Pa: 0.951 (s: 0.98) Exon 3 52575 52671 ( 97 n); cDNA 394 490 ( 97 n); score: 0.990 Intron 3 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 0.98) Exon 4 52747 52936 ( 190 n); cDNA 491 680 ( 190 n); score: 0.974 MATCH C09HBa0168F14.1-2+ SGN-E373643- 0.975 680 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E373643- (51356 51503,52232 52476,52575 52671,52747 52936) Alignment (genomic DNA sequence = upper lines): TAAAGTATGG CTTGATCCAA GTGGTAAGCA GTTGGTTCAA TGGCCTGTGG AGGAACTAGA 51415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | | ||| |||| TAAAGTATGG CTTGATCCAA GTGGTAAGCA GTTGGTTCAA TGGCCTGTTG AAGAATTAGA 60 AACCCTAAGA ACTCAAAAGG TTCAATTGAG CAACAAGAAG ATGAACAATG GGGAGAAGAT 51475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | || ||||| AACCCTAAGA ACTCAAAAGG TTCAATTGAG CAACAAGAAG ATGAACAATG GTGAAAAGAT 120 TGAAGTTACA GGAATCACAC CAGCACAGGT ATATATATAG ACTTTTTTAT TTTTAATTTA 51535 |||||| ||| |||||||||| |||||||| TGAAGTGACA GGAATCACAC CAGCACAG.. .......... .......... .......... 148 TTATTATTAT TATTATTACT CTCTCCGTTT TCAAAAAAAA AATATCCCTA TTTTCTTTTA 51595 .......... .......... .......... .......... .......... .......... 148 TAGTCTCTTT AATTTAAAAA GAATGATCTA TTTTCTTTTT GGATAACCTT TTAACTTTGA 51655 .......... .......... .......... .......... .......... .......... 148 TTTTTCACGT GAAATGTTTA AAATCACGAG ATTAAAGAGC ATTTTGGTTA CATTTGACAT 51715 .......... .......... .......... .......... .......... .......... 148 AACTGAAATT TAGAAACACA AGATTAAAGG ACATTTTGGT ACATTTGACA TAACTTGAAT 51775 .......... .......... .......... .......... .......... .......... 148 TTAAAACCAC ATAATTAAAG GGCATTTTGG TACATTTGAA TTAGAACATT TTGATACATT 51835 .......... .......... .......... .......... .......... .......... 148 TGACATAACA TGAATTTAGA ACCACAAGAT TAAAAAATCT TCTTTCTTTT TTCTTAAATT 51895 .......... .......... .......... .......... .......... .......... 148 TCGTTCCAAG TCAAATTAGG TCATTCTTTT TTAATTACTC CCTCCGTCTA ATTTTATGTA 51955 .......... .......... .......... .......... .......... .......... 148 ACAACATTTG ACCGGACGGA GAGTTTTAAG AAATAAATAA AACACTTTGA GATGTGTACC 52015 .......... .......... .......... .......... .......... .......... 148 AAATTGCTCT CCAAAAATAC TCACTTTTCT CTCTCCTCAT AAATGTATTT GAGTACTATT 52075 .......... .......... .......... .......... .......... .......... 148 TTTAAAATTA AGCGAGTCCA ACAAGAATAA AATAGAAACT GTACTTTTAA ATATTTACCA 52135 .......... .......... .......... .......... .......... .......... 148 TATAAAAAAA TGTGATTTTT TTTTTTTGAA AACTGATCAA AAAGAAAATG ATATCACTCG 52195 .......... .......... .......... .......... .......... .......... 148 ACGATGAAAG TGTTTAATAA TGAAAAAACA TGACAGGCTG ATGTTGAAGT GACATTCTCA 52255 |||| |||||||||| |||||||||| .......... .......... .......... ......GCTG ATGTTGAAGT GACATTCTCA 172 TTTGCAAGTT TGGATAAGGC AGAGTCATTT GATCCTAAAT GGAATGATAT GTATGCACAA 52315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCAAGTT TGGATAAGGC AGAGTCATTT GATCCTAAAT GGAATGATAT GTATGCACAA 232 GATGTTTGTG GACTCAAGGG TGCAGATGTT CAAGGTGGGC TTGGGCCATT TGGTCTTGCT 52375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTTGTG GACTCAAGGG TGCAGATGTT CAAGGTGGGC TTGGGCCATT TGGTCTTGCT 292 ACATTAGCTA CTGAAAACTT GGAAGAAAAC ACACCGGTTT TCTTCCGAGT TTTCAAAGCA 52435 |||||||| | | |||||||| |||||||||| ||||| |||| |||||||||| |||||||||| ACATTAGCCA CCGAAAACTT GGAAGAAAAC ACACCTGTTT TCTTCCGAGT TTTCAAAGCA 352 CAGCAAAACT ACAAGGTTCT CTTGTGTTCT GACGCTAAAA GGTACTACTT ATTGAATTTT 52495 || ||||||| |||||||||| |||||| ||| |||||||||| | CAACAAAACT ACAAGGTTCT CTTGTGCTCT GACGCTAAAA G......... .......... 393 TAACTTGTTG GTAACGTTTT CGACGGTATA ATATCGAGAA GTTGAGAAAT TGACAAATCT 52555 .......... .......... .......... .......... .......... .......... 393 TTTGTTTTAT GTCTGATAGG TCAACTCTTA AGTTCAATGA AACAATGTAC AAAGCTTCAT 52615 | |||||||||| |||||||||| |||||||||| |||| ||||| .......... .........G TCAACTCTTA AGTTCAATGA AACAATGTAC AAAGTTTCAT 434 TTGCTGGATT TGTTGATGTT GATTTGGCTG ACAAGAAATT GTCACTCAGA AGCTTGGTAA 52675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTGCTGGATT TGTTGATGTT GATTTGGCTG ACAAGAAATT GTCACTCAGA AGCTTG.... 490 CTTCTCTTTC TATCGTTAAT CAAAAATCTA AACGAACATT TGAATCTAAA CTATTGAAAT 52735 .......... .......... .......... .......... .......... .......... 490 TCTTTTTGTA GATTGATAAT TCAGTTATAG AAACTTTTGG TGCTGGTGGA AAGACATGTA 52795 ||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| .......... .ATTGATAAT TCAGTTATAG AAACTTTTGG TGCTCGTGGA AAGACATGTA 539 TAACATCGAG GGTTTATCCA ACATTGGCAA TTAACGACGA GGCACATTTA TTCGCGTTTA 52855 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | TAACATCGAG GGTTTATCCA ACATTGGCAA TTAACGACAA GGCACATTTA TTCGCGTTCA 599 ACAACGGAAC GGAGCCAATC ACAATTGAGA GTTTGGATGC ATGGAGTATG GGCAAAGCTA 52915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACGGAAC GGAGCCAATC ACAATTGAGA GTTTGGATGC ATGGAGTATG GGCAAAGCTA 659 AGATACAATA TTGAAGAAAA A 52936 |||||||||| || || |||| | AGATACAATA TTAAAAAAAA A 680 hqPGS_C09HBa0168F14.1-2+_SGN-E373643- (51356 51503,52232 52476,52575 52671,52747 52936) ******************************************************************************** EST sequence 67 +strand 679 n (File: SGN-E332502+) 1 TGGATCAGCA ACCATCCTAC CTGGTAACAA GCCAGTCATC TTGTACACCG GAATCATAGA 61 TGCCAACCAA ACCCAAGTCC AAAACTACGC AATCCCAGCT AACTTATCCG ATCCATATCT 121 CCGCGAATGG ATCAAGCCAG ACAACAACCC ATTAATTATA GCCGATGAAA GTATCAACAA 181 GACCAAGTTT CGTGACCCAA CAACAGCATG GATGGGTAAA GACGGGCATT GGAGAATCGT 241 CATGGGAAGT TTGAGGAAAC ACAGCAGGGG CTTAGCTATA ATGTATAGGA GCAAAGACTT 301 TATGAAATGG GTCAAGGCTA AACACCCACT TCACTCAACT AACGGCACTG GAAACTGGGA 361 ATGCCCTGAT TTTTACCCAG TTTCATCGAA AGGTACTGAT GGGTTGGATC AATACGGTGA 421 GGAACACAAG TACGTGCTGA AGAACAGTAT GGATCTTACT CGATTTGAGT ATTATACACT 481 TGGAAAATAC GATACGAAAA AAGATAGGTA CGTTCCAGAT CCAGATTCTG TCGATAGTTT 541 GAAGGGATTG AGACTCGATT ACGGTAACTT CTACGCATCG AAGTCATTCT ACGATCCAAG 601 CAAAAATCGA AGGGTTATCT GGGGTTGGTC TAATGAATCA GATATATTCC CAGAGGATGA 661 TAATGCGAAG GGATGGGCT Predicted gene structure (within gDNA segment 50057 to 51945): Exon 1 50657 51335 ( 679 n); cDNA 1 679 ( 679 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E332502+ 1.000 679 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E332502+ (50657 51335) Alignment (genomic DNA sequence = upper lines): TGGATCAGCA ACCATCCTAC CTGGTAACAA GCCAGTCATC TTGTACACCG GAATCATAGA 50716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATCAGCA ACCATCCTAC CTGGTAACAA GCCAGTCATC TTGTACACCG GAATCATAGA 60 TGCCAACCAA ACCCAAGTCC AAAACTACGC AATCCCAGCT AACTTATCCG ATCCATATCT 50776 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAACCAA ACCCAAGTCC AAAACTACGC AATCCCAGCT AACTTATCCG ATCCATATCT 120 CCGCGAATGG ATCAAGCCAG ACAACAACCC ATTAATTATA GCCGATGAAA GTATCAACAA 50836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGCGAATGG ATCAAGCCAG ACAACAACCC ATTAATTATA GCCGATGAAA GTATCAACAA 180 GACCAAGTTT CGTGACCCAA CAACAGCATG GATGGGTAAA GACGGGCATT GGAGAATCGT 50896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAAGTTT CGTGACCCAA CAACAGCATG GATGGGTAAA GACGGGCATT GGAGAATCGT 240 CATGGGAAGT TTGAGGAAAC ACAGCAGGGG CTTAGCTATA ATGTATAGGA GCAAAGACTT 50956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGGAAGT TTGAGGAAAC ACAGCAGGGG CTTAGCTATA ATGTATAGGA GCAAAGACTT 300 TATGAAATGG GTCAAGGCTA AACACCCACT TCACTCAACT AACGGCACTG GAAACTGGGA 51016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAATGG GTCAAGGCTA AACACCCACT TCACTCAACT AACGGCACTG GAAACTGGGA 360 ATGCCCTGAT TTTTACCCAG TTTCATCGAA AGGTACTGAT GGGTTGGATC AATACGGTGA 51076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCCTGAT TTTTACCCAG TTTCATCGAA AGGTACTGAT GGGTTGGATC AATACGGTGA 420 GGAACACAAG TACGTGCTGA AGAACAGTAT GGATCTTACT CGATTTGAGT ATTATACACT 51136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACACAAG TACGTGCTGA AGAACAGTAT GGATCTTACT CGATTTGAGT ATTATACACT 480 TGGAAAATAC GATACGAAAA AAGATAGGTA CGTTCCAGAT CCAGATTCTG TCGATAGTTT 51196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAAATAC GATACGAAAA AAGATAGGTA CGTTCCAGAT CCAGATTCTG TCGATAGTTT 540 GAAGGGATTG AGACTCGATT ACGGTAACTT CTACGCATCG AAGTCATTCT ACGATCCAAG 51256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGGATTG AGACTCGATT ACGGTAACTT CTACGCATCG AAGTCATTCT ACGATCCAAG 600 CAAAAATCGA AGGGTTATCT GGGGTTGGTC TAATGAATCA GATATATTCC CAGAGGATGA 51316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAATCGA AGGGTTATCT GGGGTTGGTC TAATGAATCA GATATATTCC CAGAGGATGA 660 TAATGCGAAG GGATGGGCT 51335 |||||||||| ||||||||| TAATGCGAAG GGATGGGCT 679 hqPGS_C09HBa0168F14.1-2+_SGN-E332502+ (50657 51335) ******************************************************************************** EST sequence 92 +strand 475 n (File: SGN-E334020+) 1 AAGCCAGTCA TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT CCAAAACTAC 61 GCAATCCCAG CTAACTTATC CGATCCATAT CTCCGCGAAT GGATCAAGCC AGACAACAAC 121 CCATTAATTA TAGCCGATGA AAGTATCAAC AAGACCAAGT TTCGTGACCC AACAACAGCA 181 TGGATGGGTA AAGACGGGCA TTGGAGAATC GTCATGGGAA GTTTGAGGAA ACACAGCAGG 241 GGCTTAGCTA TAATGTATAG GAGCAAAGAC TTTATGAAAT GGGTCAAGGC TAAACACCCA 301 CTTCACTCAA CTAACGGCAC TGGAAACTGG GAATGCCCTG ATTTTTACCC AGTTTCATCG 361 AAAGGTACTG ATGGGTTGGA TCAATACGGT GAGGAACACA AGTACGTGCT GAAGAACAGT 421 ATGGATCTTA CTCGATTTGA GTATTATACA CTTGGAAAAT ACGATACGAA AAAAG Predicted gene structure (within gDNA segment 50085 to 51769): Exon 1 50685 51159 ( 475 n); cDNA 1 475 ( 475 n); score: 1.000 MATCH C09HBa0168F14.1-2+ SGN-E334020+ 1.000 475 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E334020+ (50685 51159) Alignment (genomic DNA sequence = upper lines): AAGCCAGTCA TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT CCAAAACTAC 50744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCAGTCA TCTTGTACAC CGGAATCATA GATGCCAACC AAACCCAAGT CCAAAACTAC 60 GCAATCCCAG CTAACTTATC CGATCCATAT CTCCGCGAAT GGATCAAGCC AGACAACAAC 50804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATCCCAG CTAACTTATC CGATCCATAT CTCCGCGAAT GGATCAAGCC AGACAACAAC 120 CCATTAATTA TAGCCGATGA AAGTATCAAC AAGACCAAGT TTCGTGACCC AACAACAGCA 50864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTAATTA TAGCCGATGA AAGTATCAAC AAGACCAAGT TTCGTGACCC AACAACAGCA 180 TGGATGGGTA AAGACGGGCA TTGGAGAATC GTCATGGGAA GTTTGAGGAA ACACAGCAGG 50924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATGGGTA AAGACGGGCA TTGGAGAATC GTCATGGGAA GTTTGAGGAA ACACAGCAGG 240 GGCTTAGCTA TAATGTATAG GAGCAAAGAC TTTATGAAAT GGGTCAAGGC TAAACACCCA 50984 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTAGCTA TAATGTATAG GAGCAAAGAC TTTATGAAAT GGGTCAAGGC TAAACACCCA 300 CTTCACTCAA CTAACGGCAC TGGAAACTGG GAATGCCCTG ATTTTTACCC AGTTTCATCG 51044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCACTCAA CTAACGGCAC TGGAAACTGG GAATGCCCTG ATTTTTACCC AGTTTCATCG 360 AAAGGTACTG ATGGGTTGGA TCAATACGGT GAGGAACACA AGTACGTGCT GAAGAACAGT 51104 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTACTG ATGGGTTGGA TCAATACGGT GAGGAACACA AGTACGTGCT GAAGAACAGT 420 ATGGATCTTA CTCGATTTGA GTATTATACA CTTGGAAAAT ACGATACGAA AAAAG 51159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATGGATCTTA CTCGATTTGA GTATTATACA CTTGGAAAAT ACGATACGAA AAAAG 475 hqPGS_C09HBa0168F14.1-2+_SGN-E334020+ (50685 51159) ******************************************************************************** EST sequence 110 +strand 423 n (File: SGN-E331134+) 1 ATCTTGTACA CCGGAATCAT AGATGCCAAC CAAACCCAAG TCCAAAACTA CACAATCCCA 61 TCTAACTTAT CCGATCCATA TCTCCGCGAA TGGATCAAGC CATACAACAA CCCATTAATT 121 ATAGCCGATG AAAGTATCAA CAAGACCAAG TTTCGTGACC CAACAACAGC ATGGATGGGT 181 AAAGACGGGC ATTGGAGAAT CGTTATGGGA AGTTTGAGGA AACACAGCAG GGGCTTAGCT 241 ATAATGTATA GGAGCAAAGA CTTTATGAAA TGGGTCAAGG CTAAACACCC ACTTCACTCA 301 ACTAACGGCA CTGGAAACTG GGAATGCCCT GATTTTTACC CAATTTCATT GAAAGGTACT 361 GATGGGTTGG ATCAATACCG TGAGGAACAC AAGTACGTGC TGAAGAACAG TATGGATCTT 421 ACT Predicted gene structure (within gDNA segment 50094 to 51726): Exon 1 50694 51116 ( 423 n); cDNA 1 423 ( 423 n); score: 0.983 MATCH C09HBa0168F14.1-2+ SGN-E331134+ 0.983 423 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E331134+ (50694 51116) Alignment (genomic DNA sequence = upper lines): ATCTTGTACA CCGGAATCAT AGATGCCAAC CAAACCCAAG TCCAAAACTA CGCAATCCCA 50753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ATCTTGTACA CCGGAATCAT AGATGCCAAC CAAACCCAAG TCCAAAACTA CACAATCCCA 60 GCTAACTTAT CCGATCCATA TCTCCGCGAA TGGATCAAGC CAGACAACAA CCCATTAATT 50813 ||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TCTAACTTAT CCGATCCATA TCTCCGCGAA TGGATCAAGC CATACAACAA CCCATTAATT 120 ATAGCCGATG AAAGTATCAA CAAGACCAAG TTTCGTGACC CAACAACAGC ATGGATGGGT 50873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGCCGATG AAAGTATCAA CAAGACCAAG TTTCGTGACC CAACAACAGC ATGGATGGGT 180 AAAGACGGGC ATTGGAGAAT CGTCATGGGA AGTTTGAGGA AACACAGCAG GGGCTTAGCT 50933 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AAAGACGGGC ATTGGAGAAT CGTTATGGGA AGTTTGAGGA AACACAGCAG GGGCTTAGCT 240 ATAATGTATA GGAGCAAAGA CTTTATGAAA TGGGTCAAGG CTAAACACCC ACTTCACTCA 50993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAATGTATA GGAGCAAAGA CTTTATGAAA TGGGTCAAGG CTAAACACCC ACTTCACTCA 300 ACTAACGGCA CTGGAAACTG GGAATGCCCT GATTTTTACC CAGTTTCATC GAAAGGTACT 51053 |||||||||| |||||||||| |||||||||| |||||||||| || |||||| |||||||||| ACTAACGGCA CTGGAAACTG GGAATGCCCT GATTTTTACC CAATTTCATT GAAAGGTACT 360 GATGGGTTGG ATCAATACGG TGAGGAACAC AAGTACGTGC TGAAGAACAG TATGGATCTT 51113 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GATGGGTTGG ATCAATACCG TGAGGAACAC AAGTACGTGC TGAAGAACAG TATGGATCTT 420 ACT 51116 ||| ACT 423 hqPGS_C09HBa0168F14.1-2+_SGN-E331134+ (50694 51116) ******************************************************************************** EST sequence 130 -strand 527 n (File: SGN-E225360-) 1 TGACATTCTC ATTTGCAAGT TTGGATAAGG CAGAGTCATT TGATCCTAAA TGGAATGATA 61 TGTATGCCAA GATGTTTGTG GACTCAAGGG TGCAGATGTT CAAGGTGGGC TTGGGCCATT 121 TGGTCTTGCT ACATTAGCTA CTGAAAACTT GGAAGAAAAC ACACCGGTTT TCTTCCGAGT 181 TTTCAAAGCA CAGCAAAACT ACAAGGTTCT CTTGTGTTCT GACGCTAAAA GGTCAACTCT 241 TAAGTTCAAT GAAACAATGT ACAAAGCTTC ATTTGCTGGA TTTGTTGATG TTGATTTGGC 301 CGACAAGAAA TTGTCACTCA AAAGCTTGAT TGATAATTCA GTTATAGAAA CTTTTGGTGC 361 TGGTGGAAAG ACATGTATAA CATGGAGGGT TTATCCAACA TTGGCAATTA ACGACGAGGC 421 ACATTTATTC GCGTTTAACA ACGGAACGGA GCCAATCACA ATTGAGAGTT TGGATGCATG 481 GAGTCCGGGC AAAGCTAAGA TACCATATAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 51635 to 53761): Exon 1 52245 52476 ( 232 n); cDNA 1 231 ( 231 n); score: 0.996 Intron 1 52477 52574 ( 98 n); Pd: 0.981 (s: 1.00), Pa: 0.951 (s: 1.00) Exon 2 52575 52671 ( 97 n); cDNA 232 328 ( 97 n); score: 0.979 Intron 2 52672 52746 ( 75 n); Pd: 0.964 (s: 0.96), Pa: 0.974 (s: 1.00) Exon 3 52747 52944 ( 198 n); cDNA 329 526 ( 198 n); score: 0.960 MATCH C09HBa0168F14.1-2+ SGN-E225360- 0.979 527 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E225360- (52245 52476,52575 52671,52747 52944) Alignment (genomic DNA sequence = upper lines): TGACATTCTC ATTTGCAAGT TTGGATAAGG CAGAGTCATT TGATCCTAAA TGGAATGATA 52304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACATTCTC ATTTGCAAGT TTGGATAAGG CAGAGTCATT TGATCCTAAA TGGAATGATA 60 TGTATGCACA AGATGTTTGT GGACTCAAGG GTGCAGATGT TCAAGGTGGG CTTGGGCCAT 52364 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATGC-CA AGATGTTTGT GGACTCAAGG GTGCAGATGT TCAAGGTGGG CTTGGGCCAT 119 TTGGTCTTGC TACATTAGCT ACTGAAAACT TGGAAGAAAA CACACCGGTT TTCTTCCGAG 52424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTCTTGC TACATTAGCT ACTGAAAACT TGGAAGAAAA CACACCGGTT TTCTTCCGAG 179 TTTTCAAAGC ACAGCAAAAC TACAAGGTTC TCTTGTGTTC TGACGCTAAA AGGTACTACT 52484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TTTTCAAAGC ACAGCAAAAC TACAAGGTTC TCTTGTGTTC TGACGCTAAA AG........ 231 TATTGAATTT TTAACTTGTT GGTAACGTTT TCGACGGTAT AATATCGAGA AGTTGAGAAA 52544 .......... .......... .......... .......... .......... .......... 231 TTGACAAATC TTTTGTTTTA TGTCTGATAG GTCAACTCTT AAGTTCAATG AAACAATGTA 52604 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTCAACTCTT AAGTTCAATG AAACAATGTA 261 CAAAGCTTCA TTTGCTGGAT TTGTTGATGT TGATTTGGCT GACAAGAAAT TGTCACTCAG 52664 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ||||||||| CAAAGCTTCA TTTGCTGGAT TTGTTGATGT TGATTTGGCC GACAAGAAAT TGTCACTCAA 321 AAGCTTGGTA ACTTCTCTTT CTATCGTTAA TCAAAAATCT AAACGAACAT TTGAATCTAA 52724 ||||||| AAGCTTG... .......... .......... .......... .......... .......... 328 ACTATTGAAA TTCTTTTTGT AGATTGATAA TTCAGTTATA GAAACTTTTG GTGCTGGTGG 52784 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..ATTGATAA TTCAGTTATA GAAACTTTTG GTGCTGGTGG 366 AAAGACATGT ATAACATCGA GGGTTTATCC AACATTGGCA ATTAACGACG AGGCACATTT 52844 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AAAGACATGT ATAACATGGA GGGTTTATCC AACATTGGCA ATTAACGACG AGGCACATTT 426 ATTCGCGTTT AACAACGGAA CGGAGCCAAT CACAATTGAG AGTTTGGATG CATGGAGTAT 52904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ATTCGCGTTT AACAACGGAA CGGAGCCAAT CACAATTGAG AGTTTGGATG CATGGAGTCC 486 GGGCAAAGCT AAGATACAAT ATTGAAGAAA AAAAAAAGAA 52944 |||||||||| ||||||| || || || ||| ||||||| || GGGCAAAGCT AAGATACCAT ATAAAAAAAA AAAAAAAAAA 526 hqPGS_C09HBa0168F14.1-2+_SGN-E225360- (52245 52476,52575 52671,52747 52944) ******************************************************************************** EST sequence 169 -strand 493 n (File: SGN-E218044-) 1 GTCATTTGAT CCTAAATGGA ATGATATGTA TGCACAAGAT GTTTGTGGAC TCAAAGGTGC 61 AGATGTTCAA GGTGGGCTTG GGCCATTTGG TCTTGCTACA TTAGCTACTG AAAACTTGGA 121 AGAAAACACA CCGGTTTTCT TCCGAGTTTT CAAAGCACAG CAAAACTACA AGGTTCTCTT 181 GTGTTCTGAC GCTAAAAGGT CAACTCTTAA GTTCAATGAA ACAATGTACA AAGCTTCATT 241 TGCTGGATTT GTTGATGTTG ATTTGGCTGA CAAGAAATTG TCACTCAGAA GCTTGATTGA 301 TAATTCAGTT ATAGAAACTT TTGGTGCTGG TGGAAAGACA TGTATAACAT CGAGGGTTTA 361 TCCAACATTG GCAATTAACG ACGAGGCACA TTTATTCGCG TTTAACAACG GAACGGAGCC 421 AATCACAATT GAGAGTTTGG ATGCATGGAG TATGGGCAAA GCTAAGATAC AATATTGAAA 481 AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 51669 to 53670): Exon 1 52279 52476 ( 198 n); cDNA 1 198 ( 198 n); score: 0.995 Intron 1 52477 52574 ( 98 n); Pd: 0.981 (s: 1.00), Pa: 0.951 (s: 1.00) Exon 2 52575 52671 ( 97 n); cDNA 199 295 ( 97 n); score: 1.000 Intron 2 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 52747 52944 ( 198 n); cDNA 296 493 ( 198 n); score: 0.990 MATCH C09HBa0168F14.1-2+ SGN-E218044- 0.994 493 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E218044- (52279 52476,52575 52671,52747 52944) Alignment (genomic DNA sequence = upper lines): GTCATTTGAT CCTAAATGGA ATGATATGTA TGCACAAGAT GTTTGTGGAC TCAAGGGTGC 52338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| GTCATTTGAT CCTAAATGGA ATGATATGTA TGCACAAGAT GTTTGTGGAC TCAAAGGTGC 60 AGATGTTCAA GGTGGGCTTG GGCCATTTGG TCTTGCTACA TTAGCTACTG AAAACTTGGA 52398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGTTCAA GGTGGGCTTG GGCCATTTGG TCTTGCTACA TTAGCTACTG AAAACTTGGA 120 AGAAAACACA CCGGTTTTCT TCCGAGTTTT CAAAGCACAG CAAAACTACA AGGTTCTCTT 52458 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAACACA CCGGTTTTCT TCCGAGTTTT CAAAGCACAG CAAAACTACA AGGTTCTCTT 180 GTGTTCTGAC GCTAAAAGGT ACTACTTATT GAATTTTTAA CTTGTTGGTA ACGTTTTCGA 52518 |||||||||| |||||||| GTGTTCTGAC GCTAAAAG.. .......... .......... .......... .......... 198 CGGTATAATA TCGAGAAGTT GAGAAATTGA CAAATCTTTT GTTTTATGTC TGATAGGTCA 52578 |||| .......... .......... .......... .......... .......... ......GTCA 202 ACTCTTAAGT TCAATGAAAC AATGTACAAA GCTTCATTTG CTGGATTTGT TGATGTTGAT 52638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTTAAGT TCAATGAAAC AATGTACAAA GCTTCATTTG CTGGATTTGT TGATGTTGAT 262 TTGGCTGACA AGAAATTGTC ACTCAGAAGC TTGGTAACTT CTCTTTCTAT CGTTAATCAA 52698 |||||||||| |||||||||| |||||||||| ||| TTGGCTGACA AGAAATTGTC ACTCAGAAGC TTG....... .......... .......... 295 AAATCTAAAC GAACATTTGA ATCTAAACTA TTGAAATTCT TTTTGTAGAT TGATAATTCA 52758 || |||||||||| .......... .......... .......... .......... ........AT TGATAATTCA 307 GTTATAGAAA CTTTTGGTGC TGGTGGAAAG ACATGTATAA CATCGAGGGT TTATCCAACA 52818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATAGAAA CTTTTGGTGC TGGTGGAAAG ACATGTATAA CATCGAGGGT TTATCCAACA 367 TTGGCAATTA ACGACGAGGC ACATTTATTC GCGTTTAACA ACGGAACGGA GCCAATCACA 52878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGCAATTA ACGACGAGGC ACATTTATTC GCGTTTAACA ACGGAACGGA GCCAATCACA 427 ATTGAGAGTT TGGATGCATG GAGTATGGGC AAAGCTAAGA TACAATATTG AAGAAAAAAA 52938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ATTGAGAGTT TGGATGCATG GAGTATGGGC AAAGCTAAGA TACAATATTG AAAAAAAAAA 487 AAAGAA 52944 ||| || AAAAAA 493 hqPGS_C09HBa0168F14.1-2+_SGN-E218044- (52279 52476,52575 52671,52747 52944) ******************************************************************************** EST sequence 129 -strand 470 n (File: SGN-E225721-) 1 ATATGTATGC CAAGATGTTT GTGGACTCAA GGGTGCAGAT GTTCAAGGTG GGCTTGGGCC 61 ATTTGGTCTT GCTACATTAG TACTGAAAAC TTGGAAGAAA ACACACCGGT TTTCTTCCGA 121 GTTTTCAAAG CACAGCAAAA CTACAAGGTT CTCTTGTGTT CTGACGCTAA AAGGTCAACT 181 CTTAAGTTCA ATGAAACAAT GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG 241 GCTGACAAGA AATTGTCACT CAGAAGCTTG ATTGATAATT CAGTTATAGA AACTTTTGGT 301 GCTGGTGGAA AGACATGTAT AACATCGAGG GTTTATCCAA CATTGGCAAT TAACGACGAG 361 GCACATTTAT TCGCGTTTAA CAACGGAACG GAGCCAATCA CAATTGAGAG TTTGGATGCA 421 TGGAGTATGG GCAAAGCTAA GATACAATAT TGAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 51603 to 53690): Exon 1 52302 52476 ( 175 n); cDNA 1 173 ( 173 n); score: 0.989 Intron 1 52477 52574 ( 98 n); Pd: 0.981 (s: 1.00), Pa: 0.951 (s: 1.00) Exon 2 52575 52671 ( 97 n); cDNA 174 270 ( 97 n); score: 1.000 Intron 2 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 52747 52944 ( 198 n); cDNA 271 468 ( 198 n); score: 0.990 MATCH C09HBa0168F14.1-2+ SGN-E225721- 0.991 470 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E225721- (52302 52476,52575 52671,52747 52944) Alignment (genomic DNA sequence = upper lines): ATATGTATGC ACAAGATGTT TGTGGACTCA AGGGTGCAGA TGTTCAAGGT GGGCTTGGGC 52361 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGTATGC -CAAGATGTT TGTGGACTCA AGGGTGCAGA TGTTCAAGGT GGGCTTGGGC 59 CATTTGGTCT TGCTACATTA GCTACTGAAA ACTTGGAAGA AAACACACCG GTTTTCTTCC 52421 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| CATTTGGTCT TGCTACATTA G-TACTGAAA ACTTGGAAGA AAACACACCG GTTTTCTTCC 118 GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG TTCTGACGCT AAAAGGTACT 52481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG TTCTGACGCT AAAAG..... 173 ACTTATTGAA TTTTTAACTT GTTGGTAACG TTTTCGACGG TATAATATCG AGAAGTTGAG 52541 .......... .......... .......... .......... .......... .......... 173 AAATTGACAA ATCTTTTGTT TTATGTCTGA TAGGTCAACT CTTAAGTTCA ATGAAACAAT 52601 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTCAACT CTTAAGTTCA ATGAAACAAT 200 GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG GCTGACAAGA AATTGTCACT 52661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG GCTGACAAGA AATTGTCACT 260 CAGAAGCTTG GTAACTTCTC TTTCTATCGT TAATCAAAAA TCTAAACGAA CATTTGAATC 52721 |||||||||| CAGAAGCTTG .......... .......... .......... .......... .......... 270 TAAACTATTG AAATTCTTTT TGTAGATTGA TAATTCAGTT ATAGAAACTT TTGGTGCTGG 52781 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATTGA TAATTCAGTT ATAGAAACTT TTGGTGCTGG 305 TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACATTG GCAATTAACG ACGAGGCACA 52841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACATTG GCAATTAACG ACGAGGCACA 365 TTTATTCGCG TTTAACAACG GAACGGAGCC AATCACAATT GAGAGTTTGG ATGCATGGAG 52901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTCGCG TTTAACAACG GAACGGAGCC AATCACAATT GAGAGTTTGG ATGCATGGAG 425 TATGGGCAAA GCTAAGATAC AATATTGAAG AAAAAAAAAA GAA 52944 |||||||||| |||||||||| ||||||||| |||||||||| || TATGGGCAAA GCTAAGATAC AATATTGAAA AAAAAAAAAA AAA 468 hqPGS_C09HBa0168F14.1-2+_SGN-E225721- (52302 52476,52575 52671,52747 52944) ******************************************************************************** EST sequence 132 -strand 409 n (File: SGN-E225386-) 1 GTGCAGATGT TCAAGGTGGG CTTGGGCCAT TTGGTCTTGC TACATTAGCT ACTGAAAACT 61 TGGAAGAAAA CACACCGGTT TTCTTCCGAG TTTTCAAAGC ACAGCAAAAC TACAAGGTTC 121 TCTTGTGTTC TGACGCTAAA AGGTCAACTC TTAAGTTCAA TGAAACAATG TACAAAGCTT 181 CATTTGCTGG ATTTGTTGAT GTTGATTTGG CTGACAAGAA ATTGTCACTC AGAAGCTTGA 241 TTGATAATTC AGTTATAGAA ACTTTTGGTG CTGGTGGAAA GACATGTATA ACATCGAGGG 301 TTTATCCAAC ATTGGCAATT AACGTCGAGG CACATTTATT CGCGTTTAAC AACGGAACGG 361 AGCCAATCAC AATTGAGAGT TTGGATGCAT GCCGTCCGGG CAAAGCTAA Predicted gene structure (within gDNA segment 51725 to 53678): Exon 1 52335 52476 ( 142 n); cDNA 1 142 ( 142 n); score: 1.000 Intron 1 52477 52574 ( 98 n); Pd: 0.981 (s: 1.00), Pa: 0.951 (s: 1.00) Exon 2 52575 52671 ( 97 n); cDNA 143 239 ( 97 n); score: 1.000 Intron 2 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 52747 52916 ( 170 n); cDNA 240 409 ( 170 n); score: 0.971 MATCH C09HBa0168F14.1-2+ SGN-E225386- 0.988 409 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E225386- (52335 52476,52575 52671,52747 52916) Alignment (genomic DNA sequence = upper lines): GTGCAGATGT TCAAGGTGGG CTTGGGCCAT TTGGTCTTGC TACATTAGCT ACTGAAAACT 52394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCAGATGT TCAAGGTGGG CTTGGGCCAT TTGGTCTTGC TACATTAGCT ACTGAAAACT 60 TGGAAGAAAA CACACCGGTT TTCTTCCGAG TTTTCAAAGC ACAGCAAAAC TACAAGGTTC 52454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAGAAAA CACACCGGTT TTCTTCCGAG TTTTCAAAGC ACAGCAAAAC TACAAGGTTC 120 TCTTGTGTTC TGACGCTAAA AGGTACTACT TATTGAATTT TTAACTTGTT GGTAACGTTT 52514 |||||||||| |||||||||| || TCTTGTGTTC TGACGCTAAA AG........ .......... .......... .......... 142 TCGACGGTAT AATATCGAGA AGTTGAGAAA TTGACAAATC TTTTGTTTTA TGTCTGATAG 52574 .......... .......... .......... .......... .......... .......... 142 GTCAACTCTT AAGTTCAATG AAACAATGTA CAAAGCTTCA TTTGCTGGAT TTGTTGATGT 52634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACTCTT AAGTTCAATG AAACAATGTA CAAAGCTTCA TTTGCTGGAT TTGTTGATGT 202 TGATTTGGCT GACAAGAAAT TGTCACTCAG AAGCTTGGTA ACTTCTCTTT CTATCGTTAA 52694 |||||||||| |||||||||| |||||||||| ||||||| TGATTTGGCT GACAAGAAAT TGTCACTCAG AAGCTTG... .......... .......... 239 TCAAAAATCT AAACGAACAT TTGAATCTAA ACTATTGAAA TTCTTTTTGT AGATTGATAA 52754 |||||||| .......... .......... .......... .......... .......... ..ATTGATAA 247 TTCAGTTATA GAAACTTTTG GTGCTGGTGG AAAGACATGT ATAACATCGA GGGTTTATCC 52814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGTTATA GAAACTTTTG GTGCTGGTGG AAAGACATGT ATAACATCGA GGGTTTATCC 307 AACATTGGCA ATTAACGACG AGGCACATTT ATTCGCGTTT AACAACGGAA CGGAGCCAAT 52874 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| AACATTGGCA ATTAACGTCG AGGCACATTT ATTCGCGTTT AACAACGGAA CGGAGCCAAT 367 CACAATTGAG AGTTTGGATG CATGGAGTAT GGGCAAAGCT AA 52916 |||||||||| |||||||||| |||| || |||||||||| || CACAATTGAG AGTTTGGATG CATGCCGTCC GGGCAAAGCT AA 409 hqPGS_C09HBa0168F14.1-2+_SGN-E225386- (52335 52476,52575 52671,52747 52916) ******************************************************************************** EST sequence 128 -strand 429 n (File: SGN-E225547-) 1 TGTTCAAGGT GGGCTTGGGC CATTTGGTCT TGCTACATTA GCTACTGAAA ACTTGGAAGA 61 AAACACACCG GTTTTCTTCC GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG 121 TTCTGACGCT AAAAGGTCAA CTCTTAAGTT CAATGAAACA ATGTACAAAG CTTCATTTGC 181 TGGATTTGTT GATGTTGATT TGGCTGACAA GAAATTGTCA CTCAGAAGCT TGATTGATAA 241 TTCAGTTATA GAAACTTTTG GTGCTGGTGG AAAGACATGT ATAACATCGA GGGTTTATCC 301 AACCTTGGCA ATTAACGACG AGGCACATTT ATTCGCGTTT AACAACGGAA CGGAGCCAAT 361 CACAATTGAG AGTTTGGATG CATGGAGTAT GGGCAAAGCT AAGATACCCT ACCGAAAAAA 421 AAAAAAAAA Predicted gene structure (within gDNA segment 51732 to 53741): Exon 1 52342 52476 ( 135 n); cDNA 1 135 ( 135 n); score: 1.000 Intron 1 52477 52574 ( 98 n); Pd: 0.981 (s: 1.00), Pa: 0.951 (s: 1.00) Exon 2 52575 52671 ( 97 n); cDNA 136 232 ( 97 n); score: 1.000 Intron 2 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 52747 52941 ( 195 n); cDNA 233 427 ( 195 n); score: 0.969 MATCH C09HBa0168F14.1-2+ SGN-E225547- 0.986 427 0.995 C PGS_C09HBa0168F14.1-2+_SGN-E225547- (52342 52476,52575 52671,52747 52941) Alignment (genomic DNA sequence = upper lines): TGTTCAAGGT GGGCTTGGGC CATTTGGTCT TGCTACATTA GCTACTGAAA ACTTGGAAGA 52401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCAAGGT GGGCTTGGGC CATTTGGTCT TGCTACATTA GCTACTGAAA ACTTGGAAGA 60 AAACACACCG GTTTTCTTCC GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG 52461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACACACCG GTTTTCTTCC GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG 120 TTCTGACGCT AAAAGGTACT ACTTATTGAA TTTTTAACTT GTTGGTAACG TTTTCGACGG 52521 |||||||||| ||||| TTCTGACGCT AAAAG..... .......... .......... .......... .......... 135 TATAATATCG AGAAGTTGAG AAATTGACAA ATCTTTTGTT TTATGTCTGA TAGGTCAACT 52581 ||||||| .......... .......... .......... .......... .......... ...GTCAACT 142 CTTAAGTTCA ATGAAACAAT GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG 52641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAGTTCA ATGAAACAAT GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG 202 GCTGACAAGA AATTGTCACT CAGAAGCTTG GTAACTTCTC TTTCTATCGT TAATCAAAAA 52701 |||||||||| |||||||||| |||||||||| GCTGACAAGA AATTGTCACT CAGAAGCTTG .......... .......... .......... 232 TCTAAACGAA CATTTGAATC TAAACTATTG AAATTCTTTT TGTAGATTGA TAATTCAGTT 52761 ||||| |||||||||| .......... .......... .......... .......... .....ATTGA TAATTCAGTT 247 ATAGAAACTT TTGGTGCTGG TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACATTG 52821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ATAGAAACTT TTGGTGCTGG TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACCTTG 307 GCAATTAACG ACGAGGCACA TTTATTCGCG TTTAACAACG GAACGGAGCC AATCACAATT 52881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATTAACG ACGAGGCACA TTTATTCGCG TTTAACAACG GAACGGAGCC AATCACAATT 367 GAGAGTTTGG ATGCATGGAG TATGGGCAAA GCTAAGATAC AATATTGAAG AAAAAAAAAA 52941 |||||||||| |||||||||| |||||||||| |||||||||| || ||| |||||||||| GAGAGTTTGG ATGCATGGAG TATGGGCAAA GCTAAGATAC CCTACCGAAA AAAAAAAAAA 427 hqPGS_C09HBa0168F14.1-2+_SGN-E225547- (52342 52476,52575 52671,52747 52941) ******************************************************************************** EST sequence 168 -strand 350 n (File: SGN-E217968-) 1 GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG TTCTGACGCT AAAAGGTCAA 61 CTCTTAAGTT CAATGAAACA ATGTACAAAG CTTCATTTGC TGGATTTGTT GATGTTGATT 121 TGGCTGACAA GAAATTGTCA CTCAGAAGCT TGATTGATAA TTCAGTTATA GAAACTTTTG 181 GTGCTGGTGG AAAGACATGT ATAACATCGA GGGTTTATCC AACATTGGCA ATTAACGACG 241 AGGCACATTT ATTCGCGTTT AACAACGGAA CGGAGCCAAT CACAATTGAG AGTTTGGATG 301 CATGGAGTAT GGGCAAAGCT AAGATACAAT ATTGAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 51812 to 53670): Exon 1 52422 52476 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 52477 52574 ( 98 n); Pd: 0.981 (s: 1.00), Pa: 0.951 (s: 1.00) Exon 2 52575 52671 ( 97 n); cDNA 56 152 ( 97 n); score: 1.000 Intron 2 52672 52746 ( 75 n); Pd: 0.964 (s: 1.00), Pa: 0.974 (s: 1.00) Exon 3 52747 52944 ( 198 n); cDNA 153 350 ( 198 n); score: 0.990 MATCH C09HBa0168F14.1-2+ SGN-E217968- 0.994 350 1.000 C PGS_C09HBa0168F14.1-2+_SGN-E217968- (52422 52476,52575 52671,52747 52944) Alignment (genomic DNA sequence = upper lines): GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG TTCTGACGCT AAAAGGTACT 52481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGTTTTCAA AGCACAGCAA AACTACAAGG TTCTCTTGTG TTCTGACGCT AAAAG..... 55 ACTTATTGAA TTTTTAACTT GTTGGTAACG TTTTCGACGG TATAATATCG AGAAGTTGAG 52541 .......... .......... .......... .......... .......... .......... 55 AAATTGACAA ATCTTTTGTT TTATGTCTGA TAGGTCAACT CTTAAGTTCA ATGAAACAAT 52601 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTCAACT CTTAAGTTCA ATGAAACAAT 82 GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG GCTGACAAGA AATTGTCACT 52661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAAAGCT TCATTTGCTG GATTTGTTGA TGTTGATTTG GCTGACAAGA AATTGTCACT 142 CAGAAGCTTG GTAACTTCTC TTTCTATCGT TAATCAAAAA TCTAAACGAA CATTTGAATC 52721 |||||||||| CAGAAGCTTG .......... .......... .......... .......... .......... 152 TAAACTATTG AAATTCTTTT TGTAGATTGA TAATTCAGTT ATAGAAACTT TTGGTGCTGG 52781 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....ATTGA TAATTCAGTT ATAGAAACTT TTGGTGCTGG 187 TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACATTG GCAATTAACG ACGAGGCACA 52841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAAGACA TGTATAACAT CGAGGGTTTA TCCAACATTG GCAATTAACG ACGAGGCACA 247 TTTATTCGCG TTTAACAACG GAACGGAGCC AATCACAATT GAGAGTTTGG ATGCATGGAG 52901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTCGCG TTTAACAACG GAACGGAGCC AATCACAATT GAGAGTTTGG ATGCATGGAG 307 TATGGGCAAA GCTAAGATAC AATATTGAAG AAAAAAAAAA GAA 52944 |||||||||| |||||||||| ||||||||| |||||||||| || TATGGGCAAA GCTAAGATAC AATATTGAAA AAAAAAAAAA AAA 350 hqPGS_C09HBa0168F14.1-2+_SGN-E217968- (52422 52476,52575 52671,52747 52944) ******************************************************************************** EST sequence 17 -strand 356 n (File: SGN-E225196-) 1 TGATATTCTG ACTTGCCAAC ATAATTCAAG AACCTTTGTT CCCACATCAT CTTGTTTCTT 61 TTTTTTCGAC ACAGCTGAGG CAACATGTTT CGTCTGTCTG AGCAACAGCA ACAGATCAGT 121 TTTCTGTGTC CATTCATTAC AAAGTTCATC TCTTTTTTTA TGTTTGACTT ATTTGTGTTT 181 TCATAGTATA TATCATATTT ATTTCTACTT TGTTAATGAT AAGGAGGAAT TATGTATATG 241 CAAGAGTCAG CAAATGACTC TGTGAGCTCC AATATTTATG CTAATGTATT CTGACTTACC 301 AAACATTTTA TACCTTTCAA TGTTTTGTAG ATTTTCCAAA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 54828 to 53074): Exon 1 54218 53884 ( 335 n); cDNA 1 335 ( 335 n); score: 0.997 PPA cDNA 338 356 MATCH C09HBa0168F14.1-2- SGN-E225196- 0.997 335 0.941 C PGS_C09HBa0168F14.1-2-_SGN-E225196- (54218 53884) Alignment (genomic DNA sequence = upper lines): TGATATTCTG ACTTGCCAAC ATAATTCAAG AACCTTTGTT CCCACATCAT CTTGTTTCTT 54159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATATTCTG ACTTGCCAAC ATAATTCAAG AACCTTTGTT CCCACATCAT CTTGTTTCTT 60 TTTTTTCGAC ACAGCTGAGG CAACATGTTT CGTCTGTCTG AGCAACAGCA ACAGATCAGT 54099 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTCGAC ACAGCTGAGG CAACATGTTT CGTCTGTCTG AGCAACAGCA ACAGATCAGT 120 TTTCTGTGTC CATTCATTAC AAAGTTCATC TCTTTTTTTT TGTTTGACTT ATTTGTGTTT 54039 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTTCTGTGTC CATTCATTAC AAAGTTCATC TCTTTTTTTA TGTTTGACTT ATTTGTGTTT 180 TCATAGTATA TATCATATTT ATTTCTACTT TGTTAATGAT AAGGAGGAAT TATGTATATG 53979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATAGTATA TATCATATTT ATTTCTACTT TGTTAATGAT AAGGAGGAAT TATGTATATG 240 CAAGAGTCAG CAAATGACTC TGTGAGCTCC AATATTTATG CTAATGTATT CTGACTTACC 53919 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGTCAG CAAATGACTC TGTGAGCTCC AATATTTATG CTAATGTATT CTGACTTACC 300 AAACATTTTA TACCTTTCAA TGTTTTGTAG ATTTT 53884 |||||||||| |||||||||| |||||||||| ||||| AAACATTTTA TACCTTTCAA TGTTTTGTAG ATTTT 335 hqPGS_C09HBa0168F14.1-2-_SGN-E225196- (54218 53884) ******************************************************************************** EST sequence 133 +strand 525 n (File: SGN-E251861+) 1 AAAAGTTCAT TATTAACATT ACTAACAGAA GATTTTGATG TAAATTATTA TTAAATATAT 61 AATTTGGCTT CTTTTGGCAT TTATAGTTAA TTTTAGGTAG GTATGGGAAT GATGAATATC 121 TGTTGTGTGA AGGGAGAACT CCCTGTTGAA TGTTTACACT AACTGCTTAT TGATATTCTG 181 AGCTTTCTCT TTTGATATTG TGCATCCATA ATGTATTTGT TTCCACTCTT TCTTTCTTCC 241 TGGTGTATTT TTTGTGTGTA GGTGATCTGC TAATACACTT TGGTAATTCA ATTTATGGCA 301 AGAATGATGA GTCTATTAGA TGTGCCAGGG TTTTTTCCCC AATGAGCTAA AACTTCTGAG 361 GCTTATTGAT ATTCTGACTT GCCAACATAA TTCAAGAACC TTTGTTCCCA CATCATCTTG 421 TTTCTTTTTT TTCGACACAG CTGAGGCAAC ATGTTTCGTC TGTCTGAGCA ACAGCAACAG 481 ATCAGTTTTC TGTGTCCATT CATTACAAAG TTCATCTCTT TTTTT Predicted gene structure (within gDNA segment 55184 to 53450): Exon 1 54584 54060 ( 525 n); cDNA 1 525 ( 525 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E251861+ 1.000 525 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E251861+ (54584 54060) Alignment (genomic DNA sequence = upper lines): AAAAGTTCAT TATTAACATT ACTAACAGAA GATTTTGATG TAAATTATTA TTAAATATAT 54525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTTCAT TATTAACATT ACTAACAGAA GATTTTGATG TAAATTATTA TTAAATATAT 60 AATTTGGCTT CTTTTGGCAT TTATAGTTAA TTTTAGGTAG GTATGGGAAT GATGAATATC 54465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGGCTT CTTTTGGCAT TTATAGTTAA TTTTAGGTAG GTATGGGAAT GATGAATATC 120 TGTTGTGTGA AGGGAGAACT CCCTGTTGAA TGTTTACACT AACTGCTTAT TGATATTCTG 54405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTGTGA AGGGAGAACT CCCTGTTGAA TGTTTACACT AACTGCTTAT TGATATTCTG 180 AGCTTTCTCT TTTGATATTG TGCATCCATA ATGTATTTGT TTCCACTCTT TCTTTCTTCC 54345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTCTCT TTTGATATTG TGCATCCATA ATGTATTTGT TTCCACTCTT TCTTTCTTCC 240 TGGTGTATTT TTTGTGTGTA GGTGATCTGC TAATACACTT TGGTAATTCA ATTTATGGCA 54285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTATTT TTTGTGTGTA GGTGATCTGC TAATACACTT TGGTAATTCA ATTTATGGCA 300 AGAATGATGA GTCTATTAGA TGTGCCAGGG TTTTTTCCCC AATGAGCTAA AACTTCTGAG 54225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGATGA GTCTATTAGA TGTGCCAGGG TTTTTTCCCC AATGAGCTAA AACTTCTGAG 360 GCTTATTGAT ATTCTGACTT GCCAACATAA TTCAAGAACC TTTGTTCCCA CATCATCTTG 54165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTATTGAT ATTCTGACTT GCCAACATAA TTCAAGAACC TTTGTTCCCA CATCATCTTG 420 TTTCTTTTTT TTCGACACAG CTGAGGCAAC ATGTTTCGTC TGTCTGAGCA ACAGCAACAG 54105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTTTT TTCGACACAG CTGAGGCAAC ATGTTTCGTC TGTCTGAGCA ACAGCAACAG 480 ATCAGTTTTC TGTGTCCATT CATTACAAAG TTCATCTCTT TTTTT 54060 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATCAGTTTTC TGTGTCCATT CATTACAAAG TTCATCTCTT TTTTT 525 hqPGS_C09HBa0168F14.1-2-_SGN-E251861+ (54584 54060) ******************************************************************************** EST sequence 208 +strand 400 n (File: SGN-E207863+) 1 GAAGTTACAC GTCAGGATAT AGCCCATACT TTTTGTCGAG TCACATCCGA TGTTGATTCT 61 ACTTTTTTCT AGTTGAGGTG GAATTTGTGC TATATTTAGC CTTTGCTATG GCCAGCATGA 121 TGAAAAACAA TTAGATGTGC GAGTGGTGAA TTCCTCTATG AGCTCAATCA TAGAGGCTTA 181 TTGATATACT GACTTGCATT TGTGATTCAC TCTCTTATTT TTTGATTTAC ATGGTGTTCA 241 TTGATCCCTT AATTTTTGTT GGACCTAACT ATGACTATAA AAGTTCATTC TTTACATTAC 301 TAACAGAAGA TTTTGATGTA AATGATTATT AAATATATAA TTTGGCTTCT TTTGGCATTT 361 ATAGCTAATT TTAAGTAGGT ATGGGAATGA TGAATATCTG Predicted gene structure (within gDNA segment 55462 to 53853): Exon 1 54862 54463 ( 400 n); cDNA 1 400 ( 400 n); score: 0.970 MATCH C09HBa0168F14.1-2- SGN-E207863+ 0.970 400 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E207863+ (54862 54463) Alignment (genomic DNA sequence = upper lines): GAAGTTACAC GTCAGGATAT AGCCCATACT TTTTGTGGTG TCACATCCGT TGTTGATTCT 54803 |||||||||| |||||||||| |||||||||| |||||| | | ||||||||| |||||||||| GAAGTTACAC GTCAGGATAT AGCCCATACT TTTTGTCGAG TCACATCCGA TGTTGATTCT 60 ACTTTTTTCT AGTTGAGGTG GAATTTGTGC TATATTTAGC CTTTGCTATG GCAAGCATGA 54743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ACTTTTTTCT AGTTGAGGTG GAATTTGTGC TATATTTAGC CTTTGCTATG GCCAGCATGA 120 TGAAAAACAA TTAGATGTGC GAGTGGTGAA TTCCTCTATG AGCTCAATCA TCGAGGCTTA 54683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| TGAAAAACAA TTAGATGTGC GAGTGGTGAA TTCCTCTATG AGCTCAATCA TAGAGGCTTA 180 TTGATATTCT GACTTGCATT TGTGATTCAC TCTTTTATTT TTTGATTTAC ATGGTGTTCA 54623 ||||||| || |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TTGATATACT GACTTGCATT TGTGATTCAC TCTCTTATTT TTTGATTTAC ATGGTGTTCA 240 TTGATCCCTT AATTTTTGTT GGACCTAACT ATGACTATAA AAGTTCATTA TTAACATTAC 54563 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| || ||||||| TTGATCCCTT AATTTTTGTT GGACCTAACT ATGACTATAA AAGTTCATTC TTTACATTAC 300 TAACAGAAGA TTTTGATGTA AATTATTATT AAATATATAA TTTGGCTTCT TTTGGCATTT 54503 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TAACAGAAGA TTTTGATGTA AATGATTATT AAATATATAA TTTGGCTTCT TTTGGCATTT 360 ATAGTTAATT TTAGGTAGGT ATGGGAATGA TGAATATCTG 54463 |||| ||||| ||| |||||| |||||||||| |||||||||| ATAGCTAATT TTAAGTAGGT ATGGGAATGA TGAATATCTG 400 hqPGS_C09HBa0168F14.1-2-_SGN-E207863+ (54862 54463) ******************************************************************************** EST sequence 152 +strand 746 n (File: SGN-E340059+) 1 CTGTTGAAAA TGAAAGTTGC TATCTTTTTG TTCCAACAAA AGATGCTTTG AATCTCCCTA 61 ATTTAGATGT GGTTTGCAGT ATATTTCTAT TTATATTCAT AACATAACTT TGCTATGGCA 121 AGAATGATGA TAAACTATTA GATGTGTGAG TGGTGTATTC CTCTATGAGC TCAATCATCG 181 AGGCTTATTG ATATTCTGAC TTGCCTTCTT AAAGTACTTA CAATAGAAAT AAATGGAACT 241 TTTTAATTTT GTGTTCTACA AATATGCTTC ATTATTGCAT TTGTACTAAT TTTTCACTTG 301 AAGTTGTAGC AAATTGTTAA GTTGAAATAT TTATCTGATT TAGACCTTAA CTGAAGTTAC 361 ACGTCAGGAT ATAGCCCATA CTTTTTGTGG TGTCACATCC GTTGTTGATT CTACTTTTTT 421 CTAGTTGAGG TGGAATTTGT GCTATATTTA GCCTTTGCTA TGGCAAGCAT GATGAAAAAC 481 AATTAGATGT GCGAGTGGTG AATTCCTCTA TGAGCTCAAT CATCGAGGCT TATTGATATT 541 CTGACTTGCA TTTGTGATTC ACTCTTTTAT TTTTTGATTT ACATGGTGTT CATTGATCCC 601 TTAATTTTTG TTGGACCTAA CTATGACTAT AAAAGTTCAT TATTAACATT ACTAACAGAA 661 GATTNTGATG TAAATTATTA TTAAATATAT AATTTTGGCT TCTTTTGGCA TTTATAGTTA 721 ATTTTAGGTA GGTATGGGAA TGATGA Predicted gene structure (within gDNA segment 55814 to 53860): Exon 1 55214 54470 ( 745 n); cDNA 1 746 ( 746 n); score: 0.995 MATCH C09HBa0168F14.1-2- SGN-E340059+ 0.995 745 0.999 C PGS_C09HBa0168F14.1-2-_SGN-E340059+ (55214 54470) Alignment (genomic DNA sequence = upper lines): CTGTTGAAAA TGAAAGTTGC TATCTTTTTG TTCCAACAAA AGATGCTTTG AATCTCCCTA 55155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTGAAAA TGAAAGTTGC TATCTTTTTG TTCCAACAAA AGATGCTTTG AATCTCCCTA 60 ATTTAGATGT GGTTTGCAGT ATATTTCTAT TTATATTCAT AACATAACTT TGCTATGGCA 55095 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAGATGT GGTTTGCAGT ATATTTCTAT TTATATTCAT AACATAACTT TGCTATGGCA 120 AGAATGATGA TAAACTATTA GATGTGTGAG TGGTGTATTC CTCTATGAGC TCAATCATCG 55035 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATGATGA TAAACTATTA GATGTGTGAG TGGTGTATTC CTCTATGAGC TCAATCATCG 180 AGGCTTATTG ATATTCTGAC TTGCCTTCTT AAAGTACTTA CAATAGAAAT AAATGGAACT 54975 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTTATTG ATATTCTGAC TTGCCTTCTT AAAGTACTTA CAATAGAAAT AAATGGAACT 240 TTTTAATTTT GTGTTCTACA AATATGCTTC ATTATTGCAT TTGTACTAAT TTTTCACTTG 54915 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAATTTT GTGTTCTACA AATATGCTTC ATTATTGCAT TTGTACTAAT TTTTCACTTG 300 AAGTTGTAGC AAATTGTTAA GTTGAAATAT TTATCTGATT TAGACCTTAA CTGAAGTTAC 54855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTGTAGC AAATTGTTAA GTTGAAATAT TTATCTGATT TAGACCTTAA CTGAAGTTAC 360 ACGTCAGGAT ATAGCCCATA CTTTTTGTGG TGTCACATCC GTTGTTGATT CTACTTTTTT 54795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTCAGGAT ATAGCCCATA CTTTTTGTGG TGTCACATCC GTTGTTGATT CTACTTTTTT 420 CTAGTTGAGG TGGAATTTGT GCTATATTTA GCCTTTGCTA TGGCAAGCAT GATGAAAAAC 54735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTTGAGG TGGAATTTGT GCTATATTTA GCCTTTGCTA TGGCAAGCAT GATGAAAAAC 480 AATTAGATGT GCGAGTGGTG AATTCCTCTA TGAGCTCAAT CATCGAGGCT TATTGATATT 54675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTAGATGT GCGAGTGGTG AATTCCTCTA TGAGCTCAAT CATCGAGGCT TATTGATATT 540 CTGACTTGCA TTTGTGATTC ACTCTTTTAT TTTTTGATTT ACATGGTGTT CATTGATCCC 54615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGACTTGCA TTTGTGATTC ACTCTTTTAT TTTTTGATTT ACATGGTGTT CATTGATCCC 600 TTAATTTTTG TTGGACCTAA CTATGACTAT AAAAGTTCAT TATTAACATT ACTAACAGAA 54555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATTTTTG TTGGACCTAA CTATGACTAT AAAAGTTCAT TATTAACATT ACTAACAGAA 660 GATTTTGATG TAAATTATTA TTAAATATAT AA-TTTGGCT TCTTTTGGCA TTTATAGTTA 54496 |||| ||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| GATTNTGATG TAAATTATTA TTAAATATAT AATTTTGGCT TCTTTTGGCA TTTATAGTTA 720 ATTTTAGGTA GGTATGGGAA TGATGA 54470 |||||||||| |||||||||| |||||| ATTTTAGGTA GGTATGGGAA TGATGA 746 hqPGS_C09HBa0168F14.1-2-_SGN-E340059+ (55214 54470) ******************************************************************************** EST sequence 228 +strand 435 n (File: SGN-E334450+) 1 TTAAAAATTG TTTTTTTTGT ATGTGAAGTG TGTATGATGC GTGGATTGAT CAAAATGCTA 61 TTGGGTATGC ATTAATTTCT CTTAAAGATG TGATTTTTGG AATATGTTGC AACATTTTGA 121 TCGATTGGAG CTATATAACA AAGTGTGTTG TGTATGGATT AATTTGTTTC ATTTTGCGCC 181 GCCCTTAAGA TCGCCTTCCA TTATGCTCCA TGGAAGCGTT TTGAGTCATA GCTGCGCTAT 241 ATTAATTGTA TATATGCACA CTCTTTTGTA TGTACAATTG TATATATGAA AGGTGTGTTA 301 TATGCTGGAG TTTTCTCTTT AGGGTTTTCC TTTAGTGAGT CTCCTTTTGC CTCGCCTTAT 361 TTCAGGAGTC ATATCCTTTT TTTTTGGTTT TGTCTTTCCC AATTGGGGAT ATAGAACCAA 421 AAGATGTTTT GAATG Predicted gene structure (within gDNA segment 57188 to 55544): Exon 1 56588 56154 ( 435 n); cDNA 1 435 ( 435 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E334450+ 1.000 435 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E334450+ (56588 56154) Alignment (genomic DNA sequence = upper lines): TTAAAAATTG TTTTTTTTGT ATGTGAAGTG TGTATGATGC GTGGATTGAT CAAAATGCTA 56529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAATTG TTTTTTTTGT ATGTGAAGTG TGTATGATGC GTGGATTGAT CAAAATGCTA 60 TTGGGTATGC ATTAATTTCT CTTAAAGATG TGATTTTTGG AATATGTTGC AACATTTTGA 56469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGTATGC ATTAATTTCT CTTAAAGATG TGATTTTTGG AATATGTTGC AACATTTTGA 120 TCGATTGGAG CTATATAACA AAGTGTGTTG TGTATGGATT AATTTGTTTC ATTTTGCGCC 56409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTGGAG CTATATAACA AAGTGTGTTG TGTATGGATT AATTTGTTTC ATTTTGCGCC 180 GCCCTTAAGA TCGCCTTCCA TTATGCTCCA TGGAAGCGTT TTGAGTCATA GCTGCGCTAT 56349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCTTAAGA TCGCCTTCCA TTATGCTCCA TGGAAGCGTT TTGAGTCATA GCTGCGCTAT 240 ATTAATTGTA TATATGCACA CTCTTTTGTA TGTACAATTG TATATATGAA AGGTGTGTTA 56289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAATTGTA TATATGCACA CTCTTTTGTA TGTACAATTG TATATATGAA AGGTGTGTTA 300 TATGCTGGAG TTTTCTCTTT AGGGTTTTCC TTTAGTGAGT CTCCTTTTGC CTCGCCTTAT 56229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTGGAG TTTTCTCTTT AGGGTTTTCC TTTAGTGAGT CTCCTTTTGC CTCGCCTTAT 360 TTCAGGAGTC ATATCCTTTT TTTTTGGTTT TGTCTTTCCC AATTGGGGAT ATAGAACCAA 56169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGGAGTC ATATCCTTTT TTTTTGGTTT TGTCTTTCCC AATTGGGGAT ATAGAACCAA 420 AAGATGTTTT GAATG 56154 |||||||||| ||||| AAGATGTTTT GAATG 435 hqPGS_C09HBa0168F14.1-2-_SGN-E334450+ (56588 56154) ******************************************************************************** EST sequence 142 +strand 782 n (File: SGN-E346787+) 1 AGCTGCTGAG TATCTCTGAA TTTTCTCACT ATCAAGCTCA GCTGAAGCCA TGTCGAGGAG 61 AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA GGGAAGGTGA 121 ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT GATACATTCA TTCACGTTAC 181 TGATTTGTCT GGAAGAGAAA CTATGGTTCG CATTACTGGT GGAATGAAGG TGAAGGCTGA 241 CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT CAGGATGTGT CACAGCGATG 301 CAAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG GCAACAAGAC 361 CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT CTGGCATGAA 421 AATTGGACGT ATAGAGGATG TTACTCCAAT TCCCACCGAT AGTACTCGCA GAAAGGGTGG 481 TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT GCAGCATGTT GCAAATTGGA 541 GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTG ATTTCTGAAC 601 ACTCTGTAGT TGAGCACTTT TGGTTTCGAA ACCACCTTCA TTTTGAGTTT GCCAGCTTTT 661 CGAGATAGTT AAGTTCTCTT AAATTTGGTT TATGCAGGCT AATTGTTGGA TAAATTTATA 721 CTCTTTTTAT CTTCACATTC TGTTAGTTAT AAAGCTTTAT TTCATTATGG ATAAAAAAAA 781 AA Predicted gene structure (within gDNA segment 60962 to 57080): Exon 1 60362 60311 ( 52 n); cDNA 1 52 ( 52 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 53 172 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 173 218 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 219 304 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 305 434 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57781 ( 339 n); cDNA 435 772 ( 338 n); score: 0.997 PPA cDNA 773 782 MATCH C09HBa0168F14.1-2- SGN-E346787+ 0.999 773 0.988 C PGS_C09HBa0168F14.1-2-_SGN-E346787+ (60362 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57781) Alignment (genomic DNA sequence = upper lines): AGCTGCTGAG TATCTCTGAA TTTTCTCACT ATCAAGCTCA GCTGAAGCCA TGGTACTATT 60303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || AGCTGCTGAG TATCTCTGAA TTTTCTCACT ATCAAGCTCA GCTGAAGCCA TG........ 52 TCTCGTGCTG AAATTTCCAT TTCATTACTG AAGATTTGCT GTTTATGTCG ATTATATTTA 60243 .......... .......... .......... .......... .......... .......... 52 GTTTGATTTG ATTAATTTGA ATTGAAAAAC TGTATGTTCG ATGAAATTGT TTGTTTGTAG 60183 .......... .......... .......... .......... .......... .......... 52 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 112 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 172 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 172 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | |||||||||| |||||||||| .......... .......... .......... .........C ACGTTACTGA TTTGTCTGGA 193 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 |||||||||| |||||||||| ||||| AGAGAAACTA TGGTTCGCAT TACTG..... .......... .......... .......... 218 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 218 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 218 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 218 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 218 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 218 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 218 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||||||||| .......... .......... .......... .......... .......... GTGGAATGAA 228 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 288 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 |||||||||| |||||| GTCACAGCGA TGCAAG.... .......... .......... .......... .......... 304 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 304 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 304 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 304 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 304 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 304 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 304 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 304 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 304 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 304 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 304 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 304 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 304 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 304 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 304 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 304 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 304 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 358 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 418 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| |||||| AAAATTGGAC GTATAG.... .......... .......... .......... .......... 434 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 434 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...AGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 471 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 531 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 591 TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG 57903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG 651 CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT 57843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT 711 AAATTTATAC TCTTTTTATC TTCACAATTC TGTTAGTTAT AAAGCTTTAT TTCATTATGG 57783 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAATTTATAC TCTTTTTATC TTCAC-ATTC TGTTAGTTAT AAAGCTTTAT TTCATTATGG 770 AT 57781 || AT 772 hqPGS_C09HBa0168F14.1-2-_SGN-E346787+ (60362 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57781) ******************************************************************************** EST sequence 166 +strand 430 n (File: SGN-E339097+) 1 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 61 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 121 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 181 AAATTGGAGG AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT 241 TTCTGAACAC TCTGTAGTTG AGCACTTTTG GTTTCGAAAC CACCTTCATT TTGAGTTTGC 301 CAGCTTTTCG AGATAGTTAA GTTCTCTTAA ATTTGGTTTA TGCAGGCTAA TTGTTGGATA 361 AATTTATACT CTTTTTATCT TCACAATTCT GTTAGTTATA AAGCTTTATT TCATTATGGA 421 TAAAAAAAAA Predicted gene structure (within gDNA segment 58928 to 57090): Exon 1 58328 58247 ( 82 n); cDNA 1 82 ( 82 n); score: 1.000 Intron 1 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 58119 57781 ( 339 n); cDNA 83 421 ( 339 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E339097+ 1.000 421 0.979 C PGS_C09HBa0168F14.1-2-_SGN-E339097+ (58328 58247,58119 57781) Alignment (genomic DNA sequence = upper lines): AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 58269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 60 GGCATGAAAA TTGGACGTAT AGGTACATAA GCTTTTCTCT CTTGCATCAG TATCGTATCA 58209 |||||||||| |||||||||| || GGCATGAAAA TTGGACGTAT AG........ .......... .......... .......... 82 TGGCAAAGTT CTCGTAATAT GCTCCATATA ATCTGTTGTA TCATTGTTAT GTCATCACTT 58149 .......... .......... .......... .......... .......... .......... 82 TTAAGTAATT CTTCCTATAT ATTTTGCAGA GGATGTTACT CCAATTCCCA CCGATAGTAC 58089 | |||||||||| |||||||||| |||||||||| .......... .......... .........A GGATGTTACT CCAATTCCCA CCGATAGTAC 113 TCGCAGAAAG GGTGGTAGAA GGGGAAGGAG GCTGTGAAGA CTCTTTCTCT TTTCTGCAGC 58029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCAGAAAG GGTGGTAGAA GGGGAAGGAG GCTGTGAAGA CTCTTTCTCT TTTCTGCAGC 173 ATGTTGCAAA TTGGAGGAAA ATATTGTTGT CGAAAAATGC AGCTTTCGAT ATCTATTTAC 57969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGCAAA TTGGAGGAAA ATATTGTTGT CGAAAAATGC AGCTTTCGAT ATCTATTTAC 233 ATTTGATTTC TGAACACTCT GTAGTTGAGC ACTTTTGGTT TCGAAACCAC CTTCATTTTG 57909 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGATTTC TGAACACTCT GTAGTTGAGC ACTTTTGGTT TCGAAACCAC CTTCATTTTG 293 AGTTTGCCAG CTTTTCGAGA TAGTTAAGTT CTCTTAAATT TGGTTTATGC AGGCTAATTG 57849 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGCCAG CTTTTCGAGA TAGTTAAGTT CTCTTAAATT TGGTTTATGC AGGCTAATTG 353 TTGGATAAAT TTATACTCTT TTTATCTTCA CAATTCTGTT AGTTATAAAG CTTTATTTCA 57789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGATAAAT TTATACTCTT TTTATCTTCA CAATTCTGTT AGTTATAAAG CTTTATTTCA 413 TTATGGAT 57781 |||||||| TTATGGAT 421 hqPGS_C09HBa0168F14.1-2-_SGN-E339097+ (58328 58247,58119 57781) ******************************************************************************** EST sequence 163 +strand 577 n (File: SGN-E250400+) 1 GTGGAAGAGA AACTATGGTT CGCATTACTG GTGGAATGAA AGTGAAGGCT GACAGAGATG 61 AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAAGATGT GTCACAGCGA TGCAAGGAAC 121 TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG ACCAAGACTC 181 CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG AAAATTGGAC 241 GTATAGAGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT GGTAGAAGGG 301 GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG GAGGAAAATA 361 TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA ACACTCTGTA 421 GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT TTCGAGATAG 481 TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA TACTCTTTTT 541 ATCTTCACAA TTCTGTTAGT TATAAAGCTT TATTTCA Predicted gene structure (within gDNA segment 60556 to 57179): Exon 1 59946 59918 ( 29 n); cDNA 2 30 ( 29 n); score: 1.000 Intron 1 59917 59473 ( 445 n); Pd: 0.993 (s: 0), Pa: 1.000 (s: 0.98) Exon 2 59472 59387 ( 86 n); cDNA 31 116 ( 86 n); score: 0.977 Intron 2 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 3 58376 58247 ( 130 n); cDNA 117 246 ( 130 n); score: 1.000 Intron 3 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 58119 57789 ( 331 n); cDNA 247 577 ( 331 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E250400+ 0.996 576 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E250400+ (59946 59918,59472 59387,58376 58247,58119 57789) Alignment (genomic DNA sequence = upper lines): TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 30 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 30 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 30 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 30 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 30 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 30 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 30 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 36 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TGAAAGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAAG 96 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 116 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 116 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 116 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 116 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 116 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 116 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 116 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 116 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 116 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 116 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 116 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 116 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 116 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 116 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 116 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 116 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 116 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 166 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 226 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 246 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 246 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 279 GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 58027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 339 GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 57967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 399 TTGATTTCTG AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG 57907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTTCTG AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG 459 TTTGCCAGCT TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT 57847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCAGCT TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT 519 GGATAAATTT ATACTCTTTT TATCTTCACA ATTCTGTTAG TTATAAAGCT TTATTTCA 57789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GGATAAATTT ATACTCTTTT TATCTTCACA ATTCTGTTAG TTATAAAGCT TTATTTCA 577 hqPGS_C09HBa0168F14.1-2-_SGN-E250400+ (59946 59918,59472 59387,58376 58247,58119 57789) ******************************************************************************** EST sequence 24 -strand 629 n (File: SGN-E251038-) 1 GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG TTACTGATTT GTCTGGAAGA 61 GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG CTGACAGAGA TGAGTCTTCT 121 CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC GATGCAAGGA ACTTGGAATT 181 AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA AGACCAAGAC TCCTGGTCCT 241 GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA TGAAAATTGG ACGTATAGAG 301 GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG GTGGTAGAAG GGGAAGGAGG 361 CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT TGGAGGAAAA TATTGTTGTC 421 GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT GAACACTCTG TAGTTGAGCA 481 CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC TTTTCGAGAT AGTTAAGTTC 541 TCTTAAATTT GGTTTATGCA GGCTAATTGT TGGATAAATT TATACTCTTT TTATCTTCAC 601 AATTCTGTTA GTTATAAAGC TTTATTTCC Predicted gene structure (within gDNA segment 60708 to 57180): Exon 1 60098 60063 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 37 82 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 83 168 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 169 298 ( 130 n); score: 1.000 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 58119 57790 ( 330 n); cDNA 299 628 ( 330 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E251038- 1.000 628 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E251038- (60098 60063,59963 59918,59472 59387,58376 58247,58119 57790) Alignment (genomic DNA sequence = upper lines): GCACACATTT TTGCATCGTT CAATGATACA TTCATTGTGA GTGAGTTATG GTTTTTGAAA 60039 |||||||||| |||||||||| |||||||||| |||||| GCACACATTT TTGCATCGTT CAATGATACA TTCATT.... .......... .......... 36 ATTTGATGTA GAAATGTAGA TTTGGCTTTG TTATTTGTGT GTTTTACTGA TTCTTAGTGT 59979 .......... .......... .......... .......... .......... .......... 36 ATGTGATGAA TGCAGCACGT TACTGATTTG TCTGGAAGAG AAACTATGGT TCGCATTACT 59919 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CACGT TACTGATTTG TCTGGAAGAG AAACTATGGT TCGCATTACT 81 GGTATGCCTT ATAGAAACAA TTGTTTTATA CTTTTGACTG TATCCTTGTA GTTACTGATT 59859 | G......... .......... .......... .......... .......... .......... 82 AGCTGGTAGC AGTATAATTG TTGCTTTCGA TGCGAACATC GGTTTATGTA TAAATGTAGA 59799 .......... .......... .......... .......... .......... .......... 82 TGCCTTTCTT CCAGGATGCT AATTCTGTTG TTGTTATCCC TATTGGATAG ACATATATTT 59739 .......... .......... .......... .......... .......... .......... 82 ACTTTTTCAA TATAGATGAA TGTAAGTGGT AGGAAATGTA GAGCATCTAT AGTTTTAGGG 59679 .......... .......... .......... .......... .......... .......... 82 AAATCAAGAA TGTAGAGCAT CTATAGTTTT AGGGAATCCT TGATATGGTT GAGGCAGCAA 59619 .......... .......... .......... .......... .......... .......... 82 ATTATTGGTA TTAGAATATA ATCCTTCTAG GAAGAAGGAA AATGGGTATA GAGGTTCCGT 59559 .......... .......... .......... .......... .......... .......... 82 CTAGTGTGGA GTTTAATCTT AGTTGTTGAT GTCGTAATGG TATGGAGAAG CCTTTCATCT 59499 .......... .......... .......... .......... .......... .......... 82 CAAATTGTTA TACATTTTTG TTGCAGGTGG AATGAAGGTG AAGGCTGACA GAGATGAGTC 59439 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTGG AATGAAGGTG AAGGCTGACA GAGATGAGTC 116 TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA CAGCGATGCA AGGTAGTGTC 59379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA CAGCGATGCA AG........ 168 TTGTTTGGTT CTGATAAAGT CAATTTCCTT AATTCTACTT AATTGTTAGT TAAGCTCATC 59319 .......... .......... .......... .......... .......... .......... 168 AGATATAAAG TTGGTCTAGT TCAGGTCTAT ATCAATATAA ACCATTTATG TATGAACGAA 59259 .......... .......... .......... .......... .......... .......... 168 AAAAATGAAG ACTTTTTGCC TATATGGTAC TGTTCACAGA GATTAATATT AGATTTTATT 59199 .......... .......... .......... .......... .......... .......... 168 TCTGAAGAAA GTCACTATAC TAATTTCACT GGATATTGAT GTAATGTTTA GTTCTCCTGG 59139 .......... .......... .......... .......... .......... .......... 168 ATGTTGCATT CCATGTTGGT GCAGGGATTT ATCCTTTCTT GCATTGACCA GTAATATAGG 59079 .......... .......... .......... .......... .......... .......... 168 TGCCAAATTA CATAGCTCTT CTATAAGTGT AGAGTGTTGC TTTGTAGATA AAATTTAGCA 59019 .......... .......... .......... .......... .......... .......... 168 GTTTCGAAAT TTAAGACCTT TTGGATCTTC TGATGCCTCC CTTTTCTGAA TGTGTGCTAA 58959 .......... .......... .......... .......... .......... .......... 168 AGCCAATAAT TCTGCCGACT AGACATTCGA AGATCTTATA ATGTACATGA TGGCCTTTAC 58899 .......... .......... .......... .......... .......... .......... 168 TCCTATCTAT GTTTCTTGCT AGGATGTAGA TGGTCTATAA GATTGTTTTT GGGTTCCATA 58839 .......... .......... .......... .......... .......... .......... 168 TGCCTGATGC ATCTTACTTT TGCTTAACAA TAAAAAATTT GTGTATAATT GATTGGAATA 58779 .......... .......... .......... .......... .......... .......... 168 AATGCCATTC CTTCGAACAT ATTGTAGAGA CCCGTAGATT TTATGTCACC GGTTTGGATC 58719 .......... .......... .......... .......... .......... .......... 168 TATTAGGCTT TGTTATGGAA GATTCCATTC TGAAGTGATG TGTGCACCTT CAATTTTCGG 58659 .......... .......... .......... .......... .......... .......... 168 ACACTTTTAC CACTAACAGT TGCATAATCG CTGGTGGTGC TTGAACTATG GAAAAATGTG 58599 .......... .......... .......... .......... .......... .......... 168 TGCTTCAGAT TCTATTTAAG CGTCAAGGTT TCGGAATGGT GGTCAGAATC ATTGTTAATG 58539 .......... .......... .......... .......... .......... .......... 168 GGTTCCATGC TATGCCATTT ATTCAGAGTC TAAATATAGC TACACTATAT TTAAGACTCA 58479 .......... .......... .......... .......... .......... .......... 168 AGCTCGGATA CGTCCATCTT TATCCATCTA GTCTGATGTC ACTAGGTCTC GTCATCACTT 58419 .......... .......... .......... .......... .......... .......... 168 GTTAATCTTT TAAAATATTA TTTATGAACT TTTGATTTAC AGGAACTTGG AATTAATGCT 58359 |||||||| |||||||||| .......... .......... .......... .......... ..GAACTTGG AATTAATGCT 186 CTTCACATTA AGCTCCGAGC TACAGGAGGC AACAAGACCA AGACTCCTGG TCCTGGTGCC 58299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCACATTA AGCTCCGAGC TACAGGAGGC AACAAGACCA AGACTCCTGG TCCTGGTGCC 246 CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT GGCATGAAAA TTGGACGTAT AGGTACATAA 58239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT GGCATGAAAA TTGGACGTAT AG........ 298 GCTTTTCTCT CTTGCATCAG TATCGTATCA TGGCAAAGTT CTCGTAATAT GCTCCATATA 58179 .......... .......... .......... .......... .......... .......... 298 ATCTGTTGTA TCATTGTTAT GTCATCACTT TTAAGTAATT CTTCCTATAT ATTTTGCAGA 58119 | .......... .......... .......... .......... .......... .........A 299 GGATGTTACT CCAATTCCCA CCGATAGTAC TCGCAGAAAG GGTGGTAGAA GGGGAAGGAG 58059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGTTACT CCAATTCCCA CCGATAGTAC TCGCAGAAAG GGTGGTAGAA GGGGAAGGAG 359 GCTGTGAAGA CTCTTTCTCT TTTCTGCAGC ATGTTGCAAA TTGGAGGAAA ATATTGTTGT 57999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTGAAGA CTCTTTCTCT TTTCTGCAGC ATGTTGCAAA TTGGAGGAAA ATATTGTTGT 419 CGAAAAATGC AGCTTTCGAT ATCTATTTAC ATTTGATTTC TGAACACTCT GTAGTTGAGC 57939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAAAATGC AGCTTTCGAT ATCTATTTAC ATTTGATTTC TGAACACTCT GTAGTTGAGC 479 ACTTTTGGTT TCGAAACCAC CTTCATTTTG AGTTTGCCAG CTTTTCGAGA TAGTTAAGTT 57879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTTGGTT TCGAAACCAC CTTCATTTTG AGTTTGCCAG CTTTTCGAGA TAGTTAAGTT 539 CTCTTAAATT TGGTTTATGC AGGCTAATTG TTGGATAAAT TTATACTCTT TTTATCTTCA 57819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTAAATT TGGTTTATGC AGGCTAATTG TTGGATAAAT TTATACTCTT TTTATCTTCA 599 CAATTCTGTT AGTTATAAAG CTTTATTTC 57790 |||||||||| |||||||||| ||||||||| CAATTCTGTT AGTTATAAAG CTTTATTTC 628 hqPGS_C09HBa0168F14.1-2-_SGN-E251038- (60098 60063,59963 59918,59472 59387,58376 58247,58119 57790) ******************************************************************************** EST sequence 21 -strand 646 n (File: SGN-E252705-) 1 TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTCACGT 61 TACTGATTTG TCTGGAAGAG AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC 121 TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCAGGATG TGTCACAGCG 181 ATGCAAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA 241 GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT 301 GAAAATTGGA CGTATAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG 361 TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT GTTGCAAATT 421 GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT TTGATTTCTG 481 AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG TTTGCCAGCT 541 TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT GGATAAATTT 601 ATACTCTTTT TATCTTCACA ATTCTGTTAG TTATAAAGCT TTATTT Predicted gene structure (within gDNA segment 60727 to 57191): Exon 1 60117 60063 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 56 101 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 102 187 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 188 317 ( 130 n); score: 1.000 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 58119 57791 ( 329 n); cDNA 318 646 ( 329 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E252705- 1.000 646 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E252705- (60117 60063,59963 59918,59472 59387,58376 58247,58119 57791) Alignment (genomic DNA sequence = upper lines): TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTGTGAG 60058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATT..... 55 TGAGTTATGG TTTTTGAAAA TTTGATGTAG AAATGTAGAT TTGGCTTTGT TATTTGTGTG 59998 .......... .......... .......... .......... .......... .......... 55 TTTTACTGAT TCTTAGTGTA TGTGATGAAT GCAGCACGTT ACTGATTTGT CTGGAAGAGA 59938 |||||| |||||||||| |||||||||| .......... .......... .......... ....CACGTT ACTGATTTGT CTGGAAGAGA 81 AACTATGGTT CGCATTACTG GTATGCCTTA TAGAAACAAT TGTTTTATAC TTTTGACTGT 59878 |||||||||| |||||||||| AACTATGGTT CGCATTACTG .......... .......... .......... .......... 101 ATCCTTGTAG TTACTGATTA GCTGGTAGCA GTATAATTGT TGCTTTCGAT GCGAACATCG 59818 .......... .......... .......... .......... .......... .......... 101 GTTTATGTAT AAATGTAGAT GCCTTTCTTC CAGGATGCTA ATTCTGTTGT TGTTATCCCT 59758 .......... .......... .......... .......... .......... .......... 101 ATTGGATAGA CATATATTTA CTTTTTCAAT ATAGATGAAT GTAAGTGGTA GGAAATGTAG 59698 .......... .......... .......... .......... .......... .......... 101 AGCATCTATA GTTTTAGGGA AATCAAGAAT GTAGAGCATC TATAGTTTTA GGGAATCCTT 59638 .......... .......... .......... .......... .......... .......... 101 GATATGGTTG AGGCAGCAAA TTATTGGTAT TAGAATATAA TCCTTCTAGG AAGAAGGAAA 59578 .......... .......... .......... .......... .......... .......... 101 ATGGGTATAG AGGTTCCGTC TAGTGTGGAG TTTAATCTTA GTTGTTGATG TCGTAATGGT 59518 .......... .......... .......... .......... .......... .......... 101 ATGGAGAAGC CTTTCATCTC AAATTGTTAT ACATTTTTGT TGCAGGTGGA ATGAAGGTGA 59458 ||||| |||||||||| .......... .......... .......... .......... .....GTGGA ATGAAGGTGA 116 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 59398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 176 AGCGATGCAA GGTAGTGTCT TGTTTGGTTC TGATAAAGTC AATTTCCTTA ATTCTACTTA 59338 |||||||||| | AGCGATGCAA G......... .......... .......... .......... .......... 187 ATTGTTAGTT AAGCTCATCA GATATAAAGT TGGTCTAGTT CAGGTCTATA TCAATATAAA 59278 .......... .......... .......... .......... .......... .......... 187 CCATTTATGT ATGAACGAAA AAAATGAAGA CTTTTTGCCT ATATGGTACT GTTCACAGAG 59218 .......... .......... .......... .......... .......... .......... 187 ATTAATATTA GATTTTATTT CTGAAGAAAG TCACTATACT AATTTCACTG GATATTGATG 59158 .......... .......... .......... .......... .......... .......... 187 TAATGTTTAG TTCTCCTGGA TGTTGCATTC CATGTTGGTG CAGGGATTTA TCCTTTCTTG 59098 .......... .......... .......... .......... .......... .......... 187 CATTGACCAG TAATATAGGT GCCAAATTAC ATAGCTCTTC TATAAGTGTA GAGTGTTGCT 59038 .......... .......... .......... .......... .......... .......... 187 TTGTAGATAA AATTTAGCAG TTTCGAAATT TAAGACCTTT TGGATCTTCT GATGCCTCCC 58978 .......... .......... .......... .......... .......... .......... 187 TTTTCTGAAT GTGTGCTAAA GCCAATAATT CTGCCGACTA GACATTCGAA GATCTTATAA 58918 .......... .......... .......... .......... .......... .......... 187 TGTACATGAT GGCCTTTACT CCTATCTATG TTTCTTGCTA GGATGTAGAT GGTCTATAAG 58858 .......... .......... .......... .......... .......... .......... 187 ATTGTTTTTG GGTTCCATAT GCCTGATGCA TCTTACTTTT GCTTAACAAT AAAAAATTTG 58798 .......... .......... .......... .......... .......... .......... 187 TGTATAATTG ATTGGAATAA ATGCCATTCC TTCGAACATA TTGTAGAGAC CCGTAGATTT 58738 .......... .......... .......... .......... .......... .......... 187 TATGTCACCG GTTTGGATCT ATTAGGCTTT GTTATGGAAG ATTCCATTCT GAAGTGATGT 58678 .......... .......... .......... .......... .......... .......... 187 GTGCACCTTC AATTTTCGGA CACTTTTACC ACTAACAGTT GCATAATCGC TGGTGGTGCT 58618 .......... .......... .......... .......... .......... .......... 187 TGAACTATGG AAAAATGTGT GCTTCAGATT CTATTTAAGC GTCAAGGTTT CGGAATGGTG 58558 .......... .......... .......... .......... .......... .......... 187 GTCAGAATCA TTGTTAATGG GTTCCATGCT ATGCCATTTA TTCAGAGTCT AAATATAGCT 58498 .......... .......... .......... .......... .......... .......... 187 ACACTATATT TAAGACTCAA GCTCGGATAC GTCCATCTTT ATCCATCTAG TCTGATGTCA 58438 .......... .......... .......... .......... .......... .......... 187 CTAGGTCTCG TCATCACTTG TTAATCTTTT AAAATATTAT TTATGAACTT TTGATTTACA 58378 .......... .......... .......... .......... .......... .......... 187 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 58318 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 246 GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 58258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 306 TGGACGTATA GGTACATAAG CTTTTCTCTC TTGCATCAGT ATCGTATCAT GGCAAAGTTC 58198 |||||||||| | TGGACGTATA G......... .......... .......... .......... .......... 317 TCGTAATATG CTCCATATAA TCTGTTGTAT CATTGTTATG TCATCACTTT TAAGTAATTC 58138 .......... .......... .......... .......... .......... .......... 317 TTCCTATATA TTTTGCAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 58078 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 359 GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 58018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 419 TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT 57958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT 479 GAACACTCTG TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC 57898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACTCTG TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC 539 TTTTCGAGAT AGTTAAGTTC TCTTAAATTT GGTTTATGCA GGCTAATTGT TGGATAAATT 57838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGAGAT AGTTAAGTTC TCTTAAATTT GGTTTATGCA GGCTAATTGT TGGATAAATT 599 TATACTCTTT TTATCTTCAC AATTCTGTTA GTTATAAAGC TTTATTT 57791 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TATACTCTTT TTATCTTCAC AATTCTGTTA GTTATAAAGC TTTATTT 646 hqPGS_C09HBa0168F14.1-2-_SGN-E252705- (60117 60063,59963 59918,59472 59387,58376 58247,58119 57791) ******************************************************************************** EST sequence 30 -strand 631 n (File: SGN-E302621-) 1 CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATTCACGTTA CTGATTTGTC 61 TGGAAGAGAA ACTATGGTTC GCATTACTGG TGGAATGAAG GTGAAGGCTG ACAGAGATGA 121 GTCTTCTCCG TATGCTGCTA TGCTTGCAGC TCAGGATGTG TCACAGCGAT GCAAGGAACT 181 TGGAATTAAT GCTCTTCACA TTAAGCTCCG AGCTACAGGA GGCAACAAGA CCAAGACTCC 241 TGGTCCTGGT GCCCAGTCCG CTCTTAGAGC TTTGGCTCGT TCTGGCATGA AAATTGGACG 301 TATAGAGGAT GTTACTCCAA TTCCCACCGA TAGTACTCGC AGAAAGGGTG GTAGAAGGGG 361 AAGGAGGCTG TGAAGACTCT TTCTCTTTTC TGCAGCATGT TGCAAATTGG AGGAAAATAT 421 TGTTGTCGAA AAATGCAGCT TTCGATATCT ATTTACATTT GATTTCTGAA CACTCTGTAG 481 TTGAGCACTT TTGGTTTCGA AACCACCTTC ATTTTGAGTT TGCCAGCTTT TCGAGATAGT 541 TAAGTTCTCT TAAATTTGGT TTATGCAGGC TAATTGTTGG ATAAATTTAT ACTCTTTTTA 601 TCTTCACAAT TCTGTTAGTT AAAAAAAAAA A Predicted gene structure (within gDNA segment 60715 to 57104): Exon 1 60105 60063 ( 43 n); cDNA 1 43 ( 43 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 44 89 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 90 175 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 176 305 ( 130 n); score: 1.000 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 58119 57800 ( 320 n); cDNA 306 625 ( 320 n); score: 0.997 MATCH C09HBa0168F14.1-2- SGN-E302621- 0.998 625 0.990 C PGS_C09HBa0168F14.1-2-_SGN-E302621- (60105 60063,59963 59918,59472 59387,58376 58247,58119 57800) Alignment (genomic DNA sequence = upper lines): CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATTGTGAGTG AGTTATGGTT 60046 |||||||||| |||||||||| |||||||||| |||||||||| ||| CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATT....... .......... 43 TTTGAAAATT TGATGTAGAA ATGTAGATTT GGCTTTGTTA TTTGTGTGTT TTACTGATTC 59986 .......... .......... .......... .......... .......... .......... 43 TTAGTGTATG TGATGAATGC AGCACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG 59926 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG 81 CATTACTGGT ATGCCTTATA GAAACAATTG TTTTATACTT TTGACTGTAT CCTTGTAGTT 59866 |||||||| CATTACTG.. .......... .......... .......... .......... .......... 89 ACTGATTAGC TGGTAGCAGT ATAATTGTTG CTTTCGATGC GAACATCGGT TTATGTATAA 59806 .......... .......... .......... .......... .......... .......... 89 ATGTAGATGC CTTTCTTCCA GGATGCTAAT TCTGTTGTTG TTATCCCTAT TGGATAGACA 59746 .......... .......... .......... .......... .......... .......... 89 TATATTTACT TTTTCAATAT AGATGAATGT AAGTGGTAGG AAATGTAGAG CATCTATAGT 59686 .......... .......... .......... .......... .......... .......... 89 TTTAGGGAAA TCAAGAATGT AGAGCATCTA TAGTTTTAGG GAATCCTTGA TATGGTTGAG 59626 .......... .......... .......... .......... .......... .......... 89 GCAGCAAATT ATTGGTATTA GAATATAATC CTTCTAGGAA GAAGGAAAAT GGGTATAGAG 59566 .......... .......... .......... .......... .......... .......... 89 GTTCCGTCTA GTGTGGAGTT TAATCTTAGT TGTTGATGTC GTAATGGTAT GGAGAAGCCT 59506 .......... .......... .......... .......... .......... .......... 89 TTCATCTCAA ATTGTTATAC ATTTTTGTTG CAGGTGGAAT GAAGGTGAAG GCTGACAGAG 59446 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTGGAAT GAAGGTGAAG GCTGACAGAG 116 ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG CGATGCAAGG 59386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG CGATGCAAG. 175 TAGTGTCTTG TTTGGTTCTG ATAAAGTCAA TTTCCTTAAT TCTACTTAAT TGTTAGTTAA 59326 .......... .......... .......... .......... .......... .......... 175 GCTCATCAGA TATAAAGTTG GTCTAGTTCA GGTCTATATC AATATAAACC ATTTATGTAT 59266 .......... .......... .......... .......... .......... .......... 175 GAACGAAAAA AATGAAGACT TTTTGCCTAT ATGGTACTGT TCACAGAGAT TAATATTAGA 59206 .......... .......... .......... .......... .......... .......... 175 TTTTATTTCT GAAGAAAGTC ACTATACTAA TTTCACTGGA TATTGATGTA ATGTTTAGTT 59146 .......... .......... .......... .......... .......... .......... 175 CTCCTGGATG TTGCATTCCA TGTTGGTGCA GGGATTTATC CTTTCTTGCA TTGACCAGTA 59086 .......... .......... .......... .......... .......... .......... 175 ATATAGGTGC CAAATTACAT AGCTCTTCTA TAAGTGTAGA GTGTTGCTTT GTAGATAAAA 59026 .......... .......... .......... .......... .......... .......... 175 TTTAGCAGTT TCGAAATTTA AGACCTTTTG GATCTTCTGA TGCCTCCCTT TTCTGAATGT 58966 .......... .......... .......... .......... .......... .......... 175 GTGCTAAAGC CAATAATTCT GCCGACTAGA CATTCGAAGA TCTTATAATG TACATGATGG 58906 .......... .......... .......... .......... .......... .......... 175 CCTTTACTCC TATCTATGTT TCTTGCTAGG ATGTAGATGG TCTATAAGAT TGTTTTTGGG 58846 .......... .......... .......... .......... .......... .......... 175 TTCCATATGC CTGATGCATC TTACTTTTGC TTAACAATAA AAAATTTGTG TATAATTGAT 58786 .......... .......... .......... .......... .......... .......... 175 TGGAATAAAT GCCATTCCTT CGAACATATT GTAGAGACCC GTAGATTTTA TGTCACCGGT 58726 .......... .......... .......... .......... .......... .......... 175 TTGGATCTAT TAGGCTTTGT TATGGAAGAT TCCATTCTGA AGTGATGTGT GCACCTTCAA 58666 .......... .......... .......... .......... .......... .......... 175 TTTTCGGACA CTTTTACCAC TAACAGTTGC ATAATCGCTG GTGGTGCTTG AACTATGGAA 58606 .......... .......... .......... .......... .......... .......... 175 AAATGTGTGC TTCAGATTCT ATTTAAGCGT CAAGGTTTCG GAATGGTGGT CAGAATCATT 58546 .......... .......... .......... .......... .......... .......... 175 GTTAATGGGT TCCATGCTAT GCCATTTATT CAGAGTCTAA ATATAGCTAC ACTATATTTA 58486 .......... .......... .......... .......... .......... .......... 175 AGACTCAAGC TCGGATACGT CCATCTTTAT CCATCTAGTC TGATGTCACT AGGTCTCGTC 58426 .......... .......... .......... .......... .......... .......... 175 ATCACTTGTT AATCTTTTAA AATATTATTT ATGAACTTTT GATTTACAGG AACTTGGAAT 58366 | |||||||||| .......... .......... .......... .......... .........G AACTTGGAAT 186 TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA CTCCTGGTCC 58306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA CTCCTGGTCC 246 TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG GACGTATAGG 58246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG GACGTATAG. 305 TACATAAGCT TTTCTCTCTT GCATCAGTAT CGTATCATGG CAAAGTTCTC GTAATATGCT 58186 .......... .......... .......... .......... .......... .......... 305 CCATATAATC TGTTGTATCA TTGTTATGTC ATCACTTTTA AGTAATTCTT CCTATATATT 58126 .......... .......... .......... .......... .......... .......... 305 TTGCAGAGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT GGTAGAAGGG 58066 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......AGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT GGTAGAAGGG 359 GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG GAGGAAAATA 58006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG GAGGAAAATA 419 TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA ACACTCTGTA 57946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA ACACTCTGTA 479 GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT TTCGAGATAG 57886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT TTCGAGATAG 539 TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA TACTCTTTTT 57826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA TACTCTTTTT 599 ATCTTCACAA TTCTGTTAGT TATAAA 57800 |||||||||| |||||||||| || ||| ATCTTCACAA TTCTGTTAGT TAAAAA 625 hqPGS_C09HBa0168F14.1-2-_SGN-E302621- (60105 60063,59963 59918,59472 59387,58376 58247,58119 57800) ******************************************************************************** EST sequence 171 +strand 757 n (File: SGN-E328964+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG 181 TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG 241 CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC 301 GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 361 AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA 421 TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 481 GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 541 TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT 601 GAACACTCTG TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC 661 TTTTCGAGAT AGTTAAGTTC TCTTAAATTT GGTTTATGCA GGCTAATTGT TGGATAAATT 721 TATACTCTTT TTATCTTCAC AATTCTGTTA GTTAAAA Predicted gene structure (within gDNA segment 60966 to 57164): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57801 ( 319 n); cDNA 439 757 ( 319 n); score: 0.997 MATCH C09HBa0168F14.1-2- SGN-E328964+ 0.999 757 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E328964+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57801) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 172 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 176 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 193 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 222 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 222 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 222 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 222 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 222 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 222 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 222 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 228 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 288 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 308 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 308 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 308 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 308 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 308 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 308 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 308 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 308 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 308 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 308 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 308 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 308 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 308 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 308 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 308 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 308 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 308 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 358 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 418 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 438 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 438 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 471 GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 58027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 531 GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 57967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 591 TTGATTTCTG AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG 57907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATTTCTG AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG 651 TTTGCCAGCT TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT 57847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCCAGCT TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT 711 GGATAAATTT ATACTCTTTT TATCTTCACA ATTCTGTTAG TTATAA 57801 |||||||||| |||||||||| |||||||||| |||||||||| ||| || GGATAAATTT ATACTCTTTT TATCTTCACA ATTCTGTTAG TTAAAA 757 hqPGS_C09HBa0168F14.1-2-_SGN-E328964+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57801) ******************************************************************************** EST sequence 18 -strand 602 n (File: SGN-E284928-) 1 GTCGTTCAAT GATACATTCA TTCACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG 61 CATTACTGGT GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT 121 GCTTGCAGCT CAGGATGTGT CACAGCGATG CAAGGAACTT GGAATTAATG CTCTTCACAT 181 TAAGCTCCGA GCTACAGGAG GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC 241 TCTTAGAGCT TTGGCTCGTT CTGGCATGAA AATTGGACGT ATAGAGGATG TTACTCCAAT 301 TCCCACCGAT AGTACTCGCA GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT 361 TCTCTTTTCT GCAGCATGTT GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT 421 TCGATATCTA TTTACATTTG ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA 481 ACCACCTTCA TTTTGAGTTT GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT 541 TATGCAGGCT AATTGTTGGA TAAATTTATA CTCTTTTTAT CTTCACAATT CTGTTAAAAA 601 AA Predicted gene structure (within gDNA segment 60793 to 57148): Exon 1 60083 60063 ( 21 n); cDNA 2 22 ( 21 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 23 68 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 69 154 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 155 284 ( 130 n); score: 1.000 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 58119 57808 ( 312 n); cDNA 285 596 ( 312 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E284928- 1.000 595 0.988 C PGS_C09HBa0168F14.1-2-_SGN-E284928- (60083 60063,59963 59918,59472 59387,58376 58247,58119 57808) Alignment (genomic DNA sequence = upper lines): TCGTTCAATG ATACATTCAT TGTGAGTGAG TTATGGTTTT TGAAAATTTG ATGTAGAAAT 60024 |||||||||| |||||||||| | TCGTTCAATG ATACATTCAT T......... .......... .......... .......... 22 GTAGATTTGG CTTTGTTATT TGTGTGTTTT ACTGATTCTT AGTGTATGTG ATGAATGCAG 59964 .......... .......... .......... .......... .......... .......... 22 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTAT GCCTTATAGA 59904 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTG.... .......... 68 AACAATTGTT TTATACTTTT GACTGTATCC TTGTAGTTAC TGATTAGCTG GTAGCAGTAT 59844 .......... .......... .......... .......... .......... .......... 68 AATTGTTGCT TTCGATGCGA ACATCGGTTT ATGTATAAAT GTAGATGCCT TTCTTCCAGG 59784 .......... .......... .......... .......... .......... .......... 68 ATGCTAATTC TGTTGTTGTT ATCCCTATTG GATAGACATA TATTTACTTT TTCAATATAG 59724 .......... .......... .......... .......... .......... .......... 68 ATGAATGTAA GTGGTAGGAA ATGTAGAGCA TCTATAGTTT TAGGGAAATC AAGAATGTAG 59664 .......... .......... .......... .......... .......... .......... 68 AGCATCTATA GTTTTAGGGA ATCCTTGATA TGGTTGAGGC AGCAAATTAT TGGTATTAGA 59604 .......... .......... .......... .......... .......... .......... 68 ATATAATCCT TCTAGGAAGA AGGAAAATGG GTATAGAGGT TCCGTCTAGT GTGGAGTTTA 59544 .......... .......... .......... .......... .......... .......... 68 ATCTTAGTTG TTGATGTCGT AATGGTATGG AGAAGCCTTT CATCTCAAAT TGTTATACAT 59484 .......... .......... .......... .......... .......... .......... 68 TTTTGTTGCA GGTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC CGTATGCTGC 59424 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC CGTATGCTGC 117 TATGCTTGCA GCTCAGGATG TGTCACAGCG ATGCAAGGTA GTGTCTTGTT TGGTTCTGAT 59364 |||||||||| |||||||||| |||||||||| ||||||| TATGCTTGCA GCTCAGGATG TGTCACAGCG ATGCAAG... .......... .......... 154 AAAGTCAATT TCCTTAATTC TACTTAATTG TTAGTTAAGC TCATCAGATA TAAAGTTGGT 59304 .......... .......... .......... .......... .......... .......... 154 CTAGTTCAGG TCTATATCAA TATAAACCAT TTATGTATGA ACGAAAAAAA TGAAGACTTT 59244 .......... .......... .......... .......... .......... .......... 154 TTGCCTATAT GGTACTGTTC ACAGAGATTA ATATTAGATT TTATTTCTGA AGAAAGTCAC 59184 .......... .......... .......... .......... .......... .......... 154 TATACTAATT TCACTGGATA TTGATGTAAT GTTTAGTTCT CCTGGATGTT GCATTCCATG 59124 .......... .......... .......... .......... .......... .......... 154 TTGGTGCAGG GATTTATCCT TTCTTGCATT GACCAGTAAT ATAGGTGCCA AATTACATAG 59064 .......... .......... .......... .......... .......... .......... 154 CTCTTCTATA AGTGTAGAGT GTTGCTTTGT AGATAAAATT TAGCAGTTTC GAAATTTAAG 59004 .......... .......... .......... .......... .......... .......... 154 ACCTTTTGGA TCTTCTGATG CCTCCCTTTT CTGAATGTGT GCTAAAGCCA ATAATTCTGC 58944 .......... .......... .......... .......... .......... .......... 154 CGACTAGACA TTCGAAGATC TTATAATGTA CATGATGGCC TTTACTCCTA TCTATGTTTC 58884 .......... .......... .......... .......... .......... .......... 154 TTGCTAGGAT GTAGATGGTC TATAAGATTG TTTTTGGGTT CCATATGCCT GATGCATCTT 58824 .......... .......... .......... .......... .......... .......... 154 ACTTTTGCTT AACAATAAAA AATTTGTGTA TAATTGATTG GAATAAATGC CATTCCTTCG 58764 .......... .......... .......... .......... .......... .......... 154 AACATATTGT AGAGACCCGT AGATTTTATG TCACCGGTTT GGATCTATTA GGCTTTGTTA 58704 .......... .......... .......... .......... .......... .......... 154 TGGAAGATTC CATTCTGAAG TGATGTGTGC ACCTTCAATT TTCGGACACT TTTACCACTA 58644 .......... .......... .......... .......... .......... .......... 154 ACAGTTGCAT AATCGCTGGT GGTGCTTGAA CTATGGAAAA ATGTGTGCTT CAGATTCTAT 58584 .......... .......... .......... .......... .......... .......... 154 TTAAGCGTCA AGGTTTCGGA ATGGTGGTCA GAATCATTGT TAATGGGTTC CATGCTATGC 58524 .......... .......... .......... .......... .......... .......... 154 CATTTATTCA GAGTCTAAAT ATAGCTACAC TATATTTAAG ACTCAAGCTC GGATACGTCC 58464 .......... .......... .......... .......... .......... .......... 154 ATCTTTATCC ATCTAGTCTG ATGTCACTAG GTCTCGTCAT CACTTGTTAA TCTTTTAAAA 58404 .......... .......... .......... .......... .......... .......... 154 TATTATTTAT GAACTTTTGA TTTACAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC 58344 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC 187 CGAGCTACAG GAGGCAACAA GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA 58284 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGCTACAG GAGGCAACAA GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA 247 GCTTTGGCTC GTTCTGGCAT GAAAATTGGA CGTATAGGTA CATAAGCTTT TCTCTCTTGC 58224 |||||||||| |||||||||| |||||||||| ||||||| GCTTTGGCTC GTTCTGGCAT GAAAATTGGA CGTATAG... .......... .......... 284 ATCAGTATCG TATCATGGCA AAGTTCTCGT AATATGCTCC ATATAATCTG TTGTATCATT 58164 .......... .......... .......... .......... .......... .......... 284 GTTATGTCAT CACTTTTAAG TAATTCTTCC TATATATTTT GCAGAGGATG TTACTCCAAT 58104 |||||| |||||||||| .......... .......... .......... .......... ....AGGATG TTACTCCAAT 300 TCCCACCGAT AGTACTCGCA GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT 58044 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCACCGAT AGTACTCGCA GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT 360 TCTCTTTTCT GCAGCATGTT GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT 57984 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTTTTCT GCAGCATGTT GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT 420 TCGATATCTA TTTACATTTG ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA 57924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATATCTA TTTACATTTG ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA 480 ACCACCTTCA TTTTGAGTTT GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT 57864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACCTTCA TTTTGAGTTT GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT 540 TATGCAGGCT AATTGTTGGA TAAATTTATA CTCTTTTTAT CTTCACAATT CTGTTA 57808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TATGCAGGCT AATTGTTGGA TAAATTTATA CTCTTTTTAT CTTCACAATT CTGTTA 596 hqPGS_C09HBa0168F14.1-2-_SGN-E284928- (60083 60063,59963 59918,59472 59387,58376 58247,58119 57808) ******************************************************************************** EST sequence 185 +strand 338 n (File: SGN-E298315+) 1 CTTTGGCTCG TTCTGGCATG AAAATTGGAC GTATAGAGGA TGTTACTCCA ATTCCCACCG 61 ATAGTACTCG CAGAAAGGGT GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT 121 CTGCATCATG TTGCAAATTG GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC 181 TATTTACATT TGATTTCTGA ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT 241 CATTTTGAGT TTGCCAGCTT TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAAG 301 CTAATTGTTG GATAAATTTA TACTCTTTTT ATCTTCAC Predicted gene structure (within gDNA segment 58882 to 57208): Exon 1 58282 58247 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 58246 58120 ( 127 n); Pd: 0.971 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 58119 57818 ( 302 n); cDNA 37 338 ( 302 n); score: 0.993 MATCH C09HBa0168F14.1-2- SGN-E298315+ 0.993 338 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E298315+ (58282 58247,58119 57818) Alignment (genomic DNA sequence = upper lines): CTTTGGCTCG TTCTGGCATG AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA 58223 |||||||||| |||||||||| |||||||||| |||||| CTTTGGCTCG TTCTGGCATG AAAATTGGAC GTATAG.... .......... .......... 36 TCAGTATCGT ATCATGGCAA AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG 58163 .......... .......... .......... .......... .......... .......... 36 TTATGTCATC ACTTTTAAGT AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT 58103 ||||||| |||||||||| .......... .......... .......... .......... ...AGGATGT TACTCCAATT 53 CCCACCGATA GTACTCGCAG AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT 58043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCACCGATA GTACTCGCAG AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT 113 CTCTTTTCTG CAGCATGTTG CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT 57983 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTTTCTG CATCATGTTG CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT 173 CGATATCTAT TTACATTTGA TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA 57923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATATCTAT TTACATTTGA TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA 233 CCACCTTCAT TTTGAGTTTG CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT 57863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCTTCAT TTTGAGTTTG CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT 293 ATGCAGGCTA ATTGTTGGAT AAATTTATAC TCTTTTTATC TTCAC 57818 ||||| |||| |||||||||| |||||||||| |||||||||| ||||| ATGCAAGCTA ATTGTTGGAT AAATTTATAC TCTTTTTATC TTCAC 338 hqPGS_C09HBa0168F14.1-2-_SGN-E298315+ (58282 58247,58119 57818) ******************************************************************************** EST sequence 19 -strand 564 n (File: SGN-E203238-) 1 AACTATGGTT CGCATTACTG GTGGAATGAA GGTGAAGGCT GACAGAGATG AGTCTTCTCC 61 GTATGCTGCT ATGCTTGCAG CTCAGGATGT GTCACAGCGA TGCAAGGAAC TTGGAATTAA 121 TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG ACCAAGACTC CTGGTCCTGG 181 TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG AAAATTGGAC GTATAGAGGA 241 TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT GGTAGAAGGG GAAGGAGGCT 301 GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG GAGGAAAATA TTGTTGTCGA 361 AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA ACACTCTGTA GTTGAGCACT 421 TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT TTCGAGATAG TTAAGTTCTC 481 TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA TACTCTTTTT ATCTTAAAAA 541 AAAAAAAAAA AAACTCGCTC GTGC Predicted gene structure (within gDNA segment 60273 to 56931): Exon 1 59937 59918 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 59917 59473 ( 445 n); Pd: 0.993 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 59472 59387 ( 86 n); cDNA 21 106 ( 86 n); score: 1.000 Intron 2 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 58376 58247 ( 130 n); cDNA 107 236 ( 130 n); score: 1.000 Intron 3 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 58119 57821 ( 299 n); cDNA 237 535 ( 299 n); score: 1.000 PPA cDNA 536 554 MATCH C09HBa0168F14.1-2- SGN-E203238- 1.000 535 0.949 C PGS_C09HBa0168F14.1-2-_SGN-E203238- (59937 59918,59472 59387,58376 58247,58119 57821) Alignment (genomic DNA sequence = upper lines): AACTATGGTT CGCATTACTG GTATGCCTTA TAGAAACAAT TGTTTTATAC TTTTGACTGT 59878 |||||||||| |||||||||| AACTATGGTT CGCATTACTG .......... .......... .......... .......... 20 ATCCTTGTAG TTACTGATTA GCTGGTAGCA GTATAATTGT TGCTTTCGAT GCGAACATCG 59818 .......... .......... .......... .......... .......... .......... 20 GTTTATGTAT AAATGTAGAT GCCTTTCTTC CAGGATGCTA ATTCTGTTGT TGTTATCCCT 59758 .......... .......... .......... .......... .......... .......... 20 ATTGGATAGA CATATATTTA CTTTTTCAAT ATAGATGAAT GTAAGTGGTA GGAAATGTAG 59698 .......... .......... .......... .......... .......... .......... 20 AGCATCTATA GTTTTAGGGA AATCAAGAAT GTAGAGCATC TATAGTTTTA GGGAATCCTT 59638 .......... .......... .......... .......... .......... .......... 20 GATATGGTTG AGGCAGCAAA TTATTGGTAT TAGAATATAA TCCTTCTAGG AAGAAGGAAA 59578 .......... .......... .......... .......... .......... .......... 20 ATGGGTATAG AGGTTCCGTC TAGTGTGGAG TTTAATCTTA GTTGTTGATG TCGTAATGGT 59518 .......... .......... .......... .......... .......... .......... 20 ATGGAGAAGC CTTTCATCTC AAATTGTTAT ACATTTTTGT TGCAGGTGGA ATGAAGGTGA 59458 ||||| |||||||||| .......... .......... .......... .......... .....GTGGA ATGAAGGTGA 35 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 59398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 95 AGCGATGCAA GGTAGTGTCT TGTTTGGTTC TGATAAAGTC AATTTCCTTA ATTCTACTTA 59338 |||||||||| | AGCGATGCAA G......... .......... .......... .......... .......... 106 ATTGTTAGTT AAGCTCATCA GATATAAAGT TGGTCTAGTT CAGGTCTATA TCAATATAAA 59278 .......... .......... .......... .......... .......... .......... 106 CCATTTATGT ATGAACGAAA AAAATGAAGA CTTTTTGCCT ATATGGTACT GTTCACAGAG 59218 .......... .......... .......... .......... .......... .......... 106 ATTAATATTA GATTTTATTT CTGAAGAAAG TCACTATACT AATTTCACTG GATATTGATG 59158 .......... .......... .......... .......... .......... .......... 106 TAATGTTTAG TTCTCCTGGA TGTTGCATTC CATGTTGGTG CAGGGATTTA TCCTTTCTTG 59098 .......... .......... .......... .......... .......... .......... 106 CATTGACCAG TAATATAGGT GCCAAATTAC ATAGCTCTTC TATAAGTGTA GAGTGTTGCT 59038 .......... .......... .......... .......... .......... .......... 106 TTGTAGATAA AATTTAGCAG TTTCGAAATT TAAGACCTTT TGGATCTTCT GATGCCTCCC 58978 .......... .......... .......... .......... .......... .......... 106 TTTTCTGAAT GTGTGCTAAA GCCAATAATT CTGCCGACTA GACATTCGAA GATCTTATAA 58918 .......... .......... .......... .......... .......... .......... 106 TGTACATGAT GGCCTTTACT CCTATCTATG TTTCTTGCTA GGATGTAGAT GGTCTATAAG 58858 .......... .......... .......... .......... .......... .......... 106 ATTGTTTTTG GGTTCCATAT GCCTGATGCA TCTTACTTTT GCTTAACAAT AAAAAATTTG 58798 .......... .......... .......... .......... .......... .......... 106 TGTATAATTG ATTGGAATAA ATGCCATTCC TTCGAACATA TTGTAGAGAC CCGTAGATTT 58738 .......... .......... .......... .......... .......... .......... 106 TATGTCACCG GTTTGGATCT ATTAGGCTTT GTTATGGAAG ATTCCATTCT GAAGTGATGT 58678 .......... .......... .......... .......... .......... .......... 106 GTGCACCTTC AATTTTCGGA CACTTTTACC ACTAACAGTT GCATAATCGC TGGTGGTGCT 58618 .......... .......... .......... .......... .......... .......... 106 TGAACTATGG AAAAATGTGT GCTTCAGATT CTATTTAAGC GTCAAGGTTT CGGAATGGTG 58558 .......... .......... .......... .......... .......... .......... 106 GTCAGAATCA TTGTTAATGG GTTCCATGCT ATGCCATTTA TTCAGAGTCT AAATATAGCT 58498 .......... .......... .......... .......... .......... .......... 106 ACACTATATT TAAGACTCAA GCTCGGATAC GTCCATCTTT ATCCATCTAG TCTGATGTCA 58438 .......... .......... .......... .......... .......... .......... 106 CTAGGTCTCG TCATCACTTG TTAATCTTTT AAAATATTAT TTATGAACTT TTGATTTACA 58378 .......... .......... .......... .......... .......... .......... 106 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 58318 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 165 GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 58258 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 225 TGGACGTATA GGTACATAAG CTTTTCTCTC TTGCATCAGT ATCGTATCAT GGCAAAGTTC 58198 |||||||||| | TGGACGTATA G......... .......... .......... .......... .......... 236 TCGTAATATG CTCCATATAA TCTGTTGTAT CATTGTTATG TCATCACTTT TAAGTAATTC 58138 .......... .......... .......... .......... .......... .......... 236 TTCCTATATA TTTTGCAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 58078 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 278 GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 58018 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 338 TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT 57958 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT 398 GAACACTCTG TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC 57898 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACACTCTG TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC 458 TTTTCGAGAT AGTTAAGTTC TCTTAAATTT GGTTTATGCA GGCTAATTGT TGGATAAATT 57838 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGAGAT AGTTAAGTTC TCTTAAATTT GGTTTATGCA GGCTAATTGT TGGATAAATT 518 TATACTCTTT TTATCTT 57821 |||||||||| ||||||| TATACTCTTT TTATCTT 535 hqPGS_C09HBa0168F14.1-2-_SGN-E203238- (59472 59387,58376 58247,58119 57821) ******************************************************************************** EST sequence 243 +strand 741 n (File: SGN-E345976+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 541 CAAATTGGAG GAAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTG 601 ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TTGGTTTCGA AACCACCTTC ATTTTTGAGT 661 TTGCCAGCTT TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG 721 GATAAATTTA TACTCTTTTT T Predicted gene structure (within gDNA segment 60970 to 57206): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0.95) Exon 6 58119 57826 ( 294 n); cDNA 443 740 ( 298 n); score: 0.966 MATCH C09HBa0168F14.1-2- SGN-E345976+ 0.986 736 0.993 C PGS_C09HBa0168F14.1-2-_SGN-E345976+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57826) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGG-TA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC 58032 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC 531 AGCATGTTGC AAATTGGAGG -AAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT 57973 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGCATGTTGC AAATTGGAGG AAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT 591 TTACATTTGA TTTCTGAACA CTCTGTAGTT GAGCAC-TTT TGGTTTCGAA ACCACCTTCA 57914 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TTACATTTGA TTTCTGAACA CTCTGTAGTT GAGCACTTTT TGGTTTCGAA ACCACCTTCA 651 -TTTTGAGTT TGCCAGCTTT TCGAGATAGT TAAGTTCTCT TAAATTTGGT TTATGCAGGC 57855 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTGAGTT TGCCAGCTTT TCGAGATAGT TAAGTTCTCT TAAATTTGGT TTATGCAGGC 711 TAATTGTTGG ATAAATTTAT ACTCTTTTT 57826 |||||||||| |||||||||| ||||||||| TAATTGTTGG ATAAATTTAT ACTCTTTTT 740 hqPGS_C09HBa0168F14.1-2-_SGN-E345976+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57826) ******************************************************************************** EST sequence 98 -strand 734 n (File: SGN-E545733-) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT 61 CGAGGAGAAA GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG 121 AAGGTGAATT GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC 181 ACGTTACTGA TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA 241 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 301 AGCGATGCAA GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA 361 ACAAGACCAA GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG 421 GCATGAAAAT TGGACGTATA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA 481 AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA GCATGTTGCA 541 AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT ACATTTGATT 601 TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT TGAGTTTGCC 661 AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTAT GCAGGCTAAT TGTTGGATAA 721 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 60980 to 57110): Exon 1 60370 60311 ( 60 n); cDNA 1 59 ( 59 n); score: 0.983 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 60 179 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 180 225 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 226 311 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 312 441 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57841 ( 279 n); cDNA 442 720 ( 279 n); score: 1.000 PPA cDNA 721 734 MATCH C09HBa0168F14.1-2- SGN-E545733- 0.999 721 0.982 C PGS_C09HBa0168F14.1-2-_SGN-E545733- (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57841) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTG-ATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 59 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 59 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 59 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 111 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 171 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 179 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 192 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 225 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 225 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 225 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 225 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 225 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 225 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 225 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 227 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 287 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 311 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 311 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 311 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 311 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 311 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 311 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 311 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 311 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 311 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 311 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 311 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 311 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 311 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 311 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 311 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 311 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 311 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 357 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 417 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 441 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 441 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 470 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 530 GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 57971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 590 ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 57911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 650 TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTAT GCAGGCTAAT 57851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTAT GCAGGCTAAT 710 TGTTGGATAA 57841 |||||||||| TGTTGGATAA 720 hqPGS_C09HBa0168F14.1-2-_SGN-E545733- (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57841) ******************************************************************************** EST sequence 235 +strand 732 n (File: SGN-E545734+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAATTGGAGG AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT 601 TTCTGAACAC TCTGTAGTTG AGCACTTTTG GTTTCGAAAC CACCTTCATT TTGAGTTTGC 661 CAGCTTTTCG AGATAGTTAA GTTCTCTTAA ATTTGGTTTA TGCAGGCTAA TTGTTGGATA 721 AAAAAAAAAA AA Predicted gene structure (within gDNA segment 60970 to 57130): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57841 ( 279 n); cDNA 443 721 ( 279 n); score: 1.000 PPA cDNA 722 732 MATCH C09HBa0168F14.1-2- SGN-E545734+ 1.000 721 0.985 C PGS_C09HBa0168F14.1-2-_SGN-E545734+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57841) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 57971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 591 ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 57911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 651 TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTAT GCAGGCTAAT 57851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTAT GCAGGCTAAT 711 TGTTGGATAA 57841 |||||||||| TGTTGGATAA 721 hqPGS_C09HBa0168F14.1-2-_SGN-E545734+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57841) ******************************************************************************** EST sequence 216 +strand 512 n (File: SGN-E282245+) 1 TACTGGTGGA ATGAAGGTGA AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT 61 TGCAGCTCAG GATGTGTCAC AGCGATGCAA GGAACTTGGA ATTAATGCTC TTCACATTAA 121 GCTCCGAGCT ACAGGAGGCA ACAAGACCAA GACTCCTGGT CCTGGTGCCC AGTCCGCTCT 181 TAGAGCTTTG GCTCGTTCTG GCATGAAAAT TGGACGTATA GAGGATGTTA CTCCAATTCC 241 CACCGATAGT ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT 301 CTTTTCTGCA GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG 361 ATATCTATTT ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC 421 ACCTTCATTT TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTAT 481 GCAGGCTAAT TGTTGGATAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 60113 to 57120): Exon 1 59473 59387 ( 87 n); cDNA 5 91 ( 87 n); score: 1.000 Intron 1 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 58376 58247 ( 130 n); cDNA 92 221 ( 130 n); score: 1.000 Intron 2 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 58119 57841 ( 279 n); cDNA 222 500 ( 279 n); score: 1.000 PPA cDNA 501 512 MATCH C09HBa0168F14.1-2- SGN-E282245+ 1.000 496 0.969 C PGS_C09HBa0168F14.1-2-_SGN-E282245+ (59473 59387,58376 58247,58119 57841) Alignment (genomic DNA sequence = upper lines): GGTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA 59414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA 64 GCTCAGGATG TGTCACAGCG ATGCAAGGTA GTGTCTTGTT TGGTTCTGAT AAAGTCAATT 59354 |||||||||| |||||||||| ||||||| GCTCAGGATG TGTCACAGCG ATGCAAG... .......... .......... .......... 91 TCCTTAATTC TACTTAATTG TTAGTTAAGC TCATCAGATA TAAAGTTGGT CTAGTTCAGG 59294 .......... .......... .......... .......... .......... .......... 91 TCTATATCAA TATAAACCAT TTATGTATGA ACGAAAAAAA TGAAGACTTT TTGCCTATAT 59234 .......... .......... .......... .......... .......... .......... 91 GGTACTGTTC ACAGAGATTA ATATTAGATT TTATTTCTGA AGAAAGTCAC TATACTAATT 59174 .......... .......... .......... .......... .......... .......... 91 TCACTGGATA TTGATGTAAT GTTTAGTTCT CCTGGATGTT GCATTCCATG TTGGTGCAGG 59114 .......... .......... .......... .......... .......... .......... 91 GATTTATCCT TTCTTGCATT GACCAGTAAT ATAGGTGCCA AATTACATAG CTCTTCTATA 59054 .......... .......... .......... .......... .......... .......... 91 AGTGTAGAGT GTTGCTTTGT AGATAAAATT TAGCAGTTTC GAAATTTAAG ACCTTTTGGA 58994 .......... .......... .......... .......... .......... .......... 91 TCTTCTGATG CCTCCCTTTT CTGAATGTGT GCTAAAGCCA ATAATTCTGC CGACTAGACA 58934 .......... .......... .......... .......... .......... .......... 91 TTCGAAGATC TTATAATGTA CATGATGGCC TTTACTCCTA TCTATGTTTC TTGCTAGGAT 58874 .......... .......... .......... .......... .......... .......... 91 GTAGATGGTC TATAAGATTG TTTTTGGGTT CCATATGCCT GATGCATCTT ACTTTTGCTT 58814 .......... .......... .......... .......... .......... .......... 91 AACAATAAAA AATTTGTGTA TAATTGATTG GAATAAATGC CATTCCTTCG AACATATTGT 58754 .......... .......... .......... .......... .......... .......... 91 AGAGACCCGT AGATTTTATG TCACCGGTTT GGATCTATTA GGCTTTGTTA TGGAAGATTC 58694 .......... .......... .......... .......... .......... .......... 91 CATTCTGAAG TGATGTGTGC ACCTTCAATT TTCGGACACT TTTACCACTA ACAGTTGCAT 58634 .......... .......... .......... .......... .......... .......... 91 AATCGCTGGT GGTGCTTGAA CTATGGAAAA ATGTGTGCTT CAGATTCTAT TTAAGCGTCA 58574 .......... .......... .......... .......... .......... .......... 91 AGGTTTCGGA ATGGTGGTCA GAATCATTGT TAATGGGTTC CATGCTATGC CATTTATTCA 58514 .......... .......... .......... .......... .......... .......... 91 GAGTCTAAAT ATAGCTACAC TATATTTAAG ACTCAAGCTC GGATACGTCC ATCTTTATCC 58454 .......... .......... .......... .......... .......... .......... 91 ATCTAGTCTG ATGTCACTAG GTCTCGTCAT CACTTGTTAA TCTTTTAAAA TATTATTTAT 58394 .......... .......... .......... .......... .......... .......... 91 GAACTTTTGA TTTACAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG 58334 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG 134 GAGGCAACAA GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC 58274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCAACAA GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC 194 GTTCTGGCAT GAAAATTGGA CGTATAGGTA CATAAGCTTT TCTCTCTTGC ATCAGTATCG 58214 |||||||||| |||||||||| ||||||| GTTCTGGCAT GAAAATTGGA CGTATAG... .......... .......... .......... 221 TATCATGGCA AAGTTCTCGT AATATGCTCC ATATAATCTG TTGTATCATT GTTATGTCAT 58154 .......... .......... .......... .......... .......... .......... 221 CACTTTTAAG TAATTCTTCC TATATATTTT GCAGAGGATG TTACTCCAAT TCCCACCGAT 58094 |||||| |||||||||| |||||||||| .......... .......... .......... ....AGGATG TTACTCCAAT TCCCACCGAT 247 AGTACTCGCA GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT 58034 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACTCGCA GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT 307 GCAGCATGTT GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA 57974 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCATGTT GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA 367 TTTACATTTG ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA ACCACCTTCA 57914 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACATTTG ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA ACCACCTTCA 427 TTTTGAGTTT GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT TATGCAGGCT 57854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGAGTTT GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT TATGCAGGCT 487 AATTGTTGGA TAA 57841 |||||||||| ||| AATTGTTGGA TAA 500 hqPGS_C09HBa0168F14.1-2-_SGN-E282245+ (59473 59387,58376 58247,58119 57841) ******************************************************************************** EST sequence 242 +strand 363 n (File: SGN-E355415+) 1 GAAAATTGGA CGTATAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG 61 TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT GTTGCAAATT 121 GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT TTGATTTCTG 181 AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG TTTGCCAGCT 241 TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT GGATAAAAAA 301 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 361 AAA Predicted gene structure (within gDNA segment 58871 to 56570): Exon 1 58263 58247 ( 17 n); cDNA 1 17 ( 17 n); score: 1.000 Intron 1 58246 58120 ( 127 n); Pd: 0.971 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 58119 57841 ( 279 n); cDNA 18 296 ( 279 n); score: 1.000 PPA cDNA 313 363 MATCH C09HBa0168F14.1-2- SGN-E355415+ 1.000 296 0.815 C PGS_C09HBa0168F14.1-2-_SGN-E355415+ (58263 58247,58119 57841) Alignment (genomic DNA sequence = upper lines): GAAAATTGGA CGTATAGGTA CATAAGCTTT TCTCTCTTGC ATCAGTATCG TATCATGGCA 58204 |||||||||| ||||||| GAAAATTGGA CGTATAG... .......... .......... .......... .......... 17 AAGTTCTCGT AATATGCTCC ATATAATCTG TTGTATCATT GTTATGTCAT CACTTTTAAG 58144 .......... .......... .......... .......... .......... .......... 17 TAATTCTTCC TATATATTTT GCAGAGGATG TTACTCCAAT TCCCACCGAT AGTACTCGCA 58084 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....AGGATG TTACTCCAAT TCCCACCGAT AGTACTCGCA 53 GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT GCAGCATGTT 58024 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT GCAGCATGTT 113 GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTG 57964 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTG 173 ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA ACCACCTTCA TTTTGAGTTT 57904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA ACCACCTTCA TTTTGAGTTT 233 GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT TATGCAGGCT AATTGTTGGA 57844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT TATGCAGGCT AATTGTTGGA 293 TAA 57841 ||| TAA 296 hqPGS_C09HBa0168F14.1-2-_SGN-E355415+ (58263 58247,58119 57841) ******************************************************************************** EST sequence 165 +strand 738 n (File: SGN-E339186+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG 181 TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG 241 CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC 301 GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 361 AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA 421 TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAGGG 481 TGGGTTAGAA GGGGAAGGAG GCTGTGAAGA CTCTTTCTCT TTTCTGCAGC ATGTTGCAAA 541 TTGGAGGAAA AATATTGTTG TCGAAAAATG CAGCTTTCGA TATCTATTTA CATTTGATTT 601 CTGAACACTC NTGTAGTTGA GCACTTTTTG GTTTCGAAAC CACCTTCATT TTTGAGTTTG 661 CCAGCTTTTC GAGATAGTTT AAGTTCTCTT AAATTTGGTT TATGCAGGGC TAATTGTTGG 721 GATAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 60966 to 56946): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0.89) Exon 6 58119 57845 ( 275 n); cDNA 439 720 ( 282 n); score: 0.925 PPA cDNA 722 738 MATCH C09HBa0168F14.1-2- SGN-E339186+ 0.969 713 0.966 C PGS_C09HBa0168F14.1-2-_SGN-E339186+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57845) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 172 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 176 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 193 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 222 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 222 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 222 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 222 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 222 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 222 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 222 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 228 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 288 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 308 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 308 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 308 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 308 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 308 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 308 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 308 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 308 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 308 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 308 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 308 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 308 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 308 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 308 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 308 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 308 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 308 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 358 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 418 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 438 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 438 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 471 GCAGAAAGG- GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA 58028 |||||| || | | |||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAGGGT GGGTTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA 531 TGTTGCAAAT TGGAGG-AAA ATATTGTTGT CGAAAAATGC AGCTTTCGAT ATCTATTTAC 57969 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGCAAAT TGGAGGAAAA ATATTGTTGT CGAAAAATGC AGCTTTCGAT ATCTATTTAC 591 ATTTGATTTC TGAACACTC- TGTAGTTGAG CAC-TTTTGG TTTCGAAACC ACCTTCA-TT 57912 |||||||||| ||||||||| |||||||||| ||| |||||| |||||||||| ||||||| || ATTTGATTTC TGAACACTCN TGTAGTTGAG CACTTTTTGG TTTCGAAACC ACCTTCATTT 651 TTGAGTTTGC CAGCTTTTCG AGATAG-TTA AGTTCTCTTA AATTTGGTTT ATGCA-GGCT 57854 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||| |||| TTGAGTTTGC CAGCTTTTCG AGATAGTTTA AGTTCTCTTA AATTTGGTTT ATGCAGGGCT 711 AATTGTTGG 57845 ||||||||| AATTGTTGG 720 hqPGS_C09HBa0168F14.1-2-_SGN-E339186+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57845) ******************************************************************************** EST sequence 162 +strand 567 n (File: SGN-E341266+) 1 TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTCACGT TACTGATTTG 61 TCTGGAAGAG AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC TGACAGAGAT 121 GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCAGGATG TGTCACAGCG ATGCAAGGAA 181 CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA GACCAAGACT 241 CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT GAAAATTGGA 301 CGTATAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG TGGTAGAAGG 361 GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT GTTGCAAATT GGAGGAAAAT 421 ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT TTGATTTCTG AACACTCTGT 481 AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG TTTGCCAGCT TTTCGAGATA 541 GTTAAGTTCT CTTAAATTTG GTTTATG Predicted gene structure (within gDNA segment 60707 to 57250): Exon 1 60107 60063 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 46 91 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 92 177 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 178 307 ( 130 n); score: 1.000 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 58119 57860 ( 260 n); cDNA 308 567 ( 260 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E341266+ 1.000 567 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E341266+ (60107 60063,59963 59918,59472 59387,58376 58247,58119 57860) Alignment (genomic DNA sequence = upper lines): TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTGTGAG TGAGTTATGG 60048 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATT..... .......... 45 TTTTTGAAAA TTTGATGTAG AAATGTAGAT TTGGCTTTGT TATTTGTGTG TTTTACTGAT 59988 .......... .......... .......... .......... .......... .......... 45 TCTTAGTGTA TGTGATGAAT GCAGCACGTT ACTGATTTGT CTGGAAGAGA AACTATGGTT 59928 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CACGTT ACTGATTTGT CTGGAAGAGA AACTATGGTT 81 CGCATTACTG GTATGCCTTA TAGAAACAAT TGTTTTATAC TTTTGACTGT ATCCTTGTAG 59868 |||||||||| CGCATTACTG .......... .......... .......... .......... .......... 91 TTACTGATTA GCTGGTAGCA GTATAATTGT TGCTTTCGAT GCGAACATCG GTTTATGTAT 59808 .......... .......... .......... .......... .......... .......... 91 AAATGTAGAT GCCTTTCTTC CAGGATGCTA ATTCTGTTGT TGTTATCCCT ATTGGATAGA 59748 .......... .......... .......... .......... .......... .......... 91 CATATATTTA CTTTTTCAAT ATAGATGAAT GTAAGTGGTA GGAAATGTAG AGCATCTATA 59688 .......... .......... .......... .......... .......... .......... 91 GTTTTAGGGA AATCAAGAAT GTAGAGCATC TATAGTTTTA GGGAATCCTT GATATGGTTG 59628 .......... .......... .......... .......... .......... .......... 91 AGGCAGCAAA TTATTGGTAT TAGAATATAA TCCTTCTAGG AAGAAGGAAA ATGGGTATAG 59568 .......... .......... .......... .......... .......... .......... 91 AGGTTCCGTC TAGTGTGGAG TTTAATCTTA GTTGTTGATG TCGTAATGGT ATGGAGAAGC 59508 .......... .......... .......... .......... .......... .......... 91 CTTTCATCTC AAATTGTTAT ACATTTTTGT TGCAGGTGGA ATGAAGGTGA AGGCTGACAG 59448 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTGGA ATGAAGGTGA AGGCTGACAG 116 AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC AGCGATGCAA 59388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC AGCGATGCAA 176 GGTAGTGTCT TGTTTGGTTC TGATAAAGTC AATTTCCTTA ATTCTACTTA ATTGTTAGTT 59328 | G......... .......... .......... .......... .......... .......... 177 AAGCTCATCA GATATAAAGT TGGTCTAGTT CAGGTCTATA TCAATATAAA CCATTTATGT 59268 .......... .......... .......... .......... .......... .......... 177 ATGAACGAAA AAAATGAAGA CTTTTTGCCT ATATGGTACT GTTCACAGAG ATTAATATTA 59208 .......... .......... .......... .......... .......... .......... 177 GATTTTATTT CTGAAGAAAG TCACTATACT AATTTCACTG GATATTGATG TAATGTTTAG 59148 .......... .......... .......... .......... .......... .......... 177 TTCTCCTGGA TGTTGCATTC CATGTTGGTG CAGGGATTTA TCCTTTCTTG CATTGACCAG 59088 .......... .......... .......... .......... .......... .......... 177 TAATATAGGT GCCAAATTAC ATAGCTCTTC TATAAGTGTA GAGTGTTGCT TTGTAGATAA 59028 .......... .......... .......... .......... .......... .......... 177 AATTTAGCAG TTTCGAAATT TAAGACCTTT TGGATCTTCT GATGCCTCCC TTTTCTGAAT 58968 .......... .......... .......... .......... .......... .......... 177 GTGTGCTAAA GCCAATAATT CTGCCGACTA GACATTCGAA GATCTTATAA TGTACATGAT 58908 .......... .......... .......... .......... .......... .......... 177 GGCCTTTACT CCTATCTATG TTTCTTGCTA GGATGTAGAT GGTCTATAAG ATTGTTTTTG 58848 .......... .......... .......... .......... .......... .......... 177 GGTTCCATAT GCCTGATGCA TCTTACTTTT GCTTAACAAT AAAAAATTTG TGTATAATTG 58788 .......... .......... .......... .......... .......... .......... 177 ATTGGAATAA ATGCCATTCC TTCGAACATA TTGTAGAGAC CCGTAGATTT TATGTCACCG 58728 .......... .......... .......... .......... .......... .......... 177 GTTTGGATCT ATTAGGCTTT GTTATGGAAG ATTCCATTCT GAAGTGATGT GTGCACCTTC 58668 .......... .......... .......... .......... .......... .......... 177 AATTTTCGGA CACTTTTACC ACTAACAGTT GCATAATCGC TGGTGGTGCT TGAACTATGG 58608 .......... .......... .......... .......... .......... .......... 177 AAAAATGTGT GCTTCAGATT CTATTTAAGC GTCAAGGTTT CGGAATGGTG GTCAGAATCA 58548 .......... .......... .......... .......... .......... .......... 177 TTGTTAATGG GTTCCATGCT ATGCCATTTA TTCAGAGTCT AAATATAGCT ACACTATATT 58488 .......... .......... .......... .......... .......... .......... 177 TAAGACTCAA GCTCGGATAC GTCCATCTTT ATCCATCTAG TCTGATGTCA CTAGGTCTCG 58428 .......... .......... .......... .......... .......... .......... 177 TCATCACTTG TTAATCTTTT AAAATATTAT TTATGAACTT TTGATTTACA GGAACTTGGA 58368 ||||||||| .......... .......... .......... .......... .......... .GAACTTGGA 186 ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA GACTCCTGGT 58308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA GACTCCTGGT 246 CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT TGGACGTATA 58248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT TGGACGTATA 306 GGTACATAAG CTTTTCTCTC TTGCATCAGT ATCGTATCAT GGCAAAGTTC TCGTAATATG 58188 | G......... .......... .......... .......... .......... .......... 307 CTCCATATAA TCTGTTGTAT CATTGTTATG TCATCACTTT TAAGTAATTC TTCCTATATA 58128 .......... .......... .......... .......... .......... .......... 307 TTTTGCAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG GTGGTAGAAG 58068 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG GTGGTAGAAG 359 GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT TGGAGGAAAA 58008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT TGGAGGAAAA 419 TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT GAACACTCTG 57948 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT GAACACTCTG 479 TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC TTTTCGAGAT 57888 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTTGAGCA CTTTTGGTTT CGAAACCACC TTCATTTTGA GTTTGCCAGC TTTTCGAGAT 539 AGTTAAGTTC TCTTAAATTT GGTTTATG 57860 |||||||||| |||||||||| |||||||| AGTTAAGTTC TCTTAAATTT GGTTTATG 567 hqPGS_C09HBa0168F14.1-2-_SGN-E341266+ (60107 60063,59963 59918,59472 59387,58376 58247,58119 57860) ******************************************************************************** EST sequence 204 +strand 706 n (File: SGN-E345234+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAATTGGAGG AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT 601 TTCTGAACAC TCTGTAGTTG AGCACTTTTT GTTTCGAAAC CACCTTCATT TTGAGTTTGC 661 CAGCTTTTCG AGATAGTTAA GTTCTCTTAA ATTTGGTTTA AAAAAA Predicted gene structure (within gDNA segment 60970 to 57192): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57862 ( 258 n); cDNA 443 700 ( 258 n); score: 0.996 MATCH C09HBa0168F14.1-2- SGN-E345234+ 0.998 700 0.992 C PGS_C09HBa0168F14.1-2-_SGN-E345234+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57862) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 57971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 591 ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 57911 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTTG TTTCGAAACC ACCTTCATTT 651 TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTA 57862 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGAGTTTGCC AGCTTTTCGA GATAGTTAAG TTCTCTTAAA TTTGGTTTA 700 hqPGS_C09HBa0168F14.1-2-_SGN-E345234+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57862) ******************************************************************************** EST sequence 141 +strand 713 n (File: SGN-E348079+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAATTGGAGG AAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 601 TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTTGAGTTT 661 GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT TAAAAAAAAA AAA Predicted gene structure (within gDNA segment 60970 to 57142): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57863 ( 257 n); cDNA 443 701 ( 259 n); score: 0.981 PPA cDNA 702 713 MATCH C09HBa0168F14.1-2- SGN-E348079+ 0.992 699 0.980 C PGS_C09HBa0168F14.1-2-_SGN-E348079+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57863) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AATTGGAGG- AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT 57972 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT 591 TACATTTGAT TTCTGAACAC TCTGTAGTTG AGCACTTTTG GTTTCGAAAC CACCTTCA-T 57913 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | TACATTTGAT TTCTGAACAC TCTGTAGTTG AGCACTTTTG GTTTCGAAAC CACCTTCATT 651 TTTGAGTTTG CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT 57863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGTTTG CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT 701 hqPGS_C09HBa0168F14.1-2-_SGN-E348079+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57863) ******************************************************************************** EST sequence 151 +strand 670 n (File: SGN-E302620+) 1 GAGTATCTCT GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATGTCGAG GAGAAAGACC 61 AGGGAGCCTA AGGAAGAGAC TGTTACACTT GGACCAGCAA CGAGGGAAGG TGAATTGGTG 121 TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTCACGT TACTGATTTG 181 TCTGGAAGAG AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC TGACAGAGAT 241 GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCAGGATG TGTCACAGCG ATGCAAGGAA 301 CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA GACCAAGACT 361 CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT GAAAATTGGA 421 CGTATAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG TGGTAGAAGG 481 GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT GTTGCAAATT GGAGGAAAAT 541 ATTGTTGTCG AAAAATGCAG CTTTCGATAT GTATTTACAT TTGATTTCTG AACACTCTGT 601 AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG TTTGCCAGCT TTTTCGAGAT 661 AGTTAAGTTC Predicted gene structure (within gDNA segment 60955 to 57268): Exon 1 60355 60311 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 46 165 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 166 211 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 212 297 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 298 427 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57878 ( 242 n); cDNA 428 670 ( 243 n); score: 0.986 MATCH C09HBa0168F14.1-2- SGN-E302620+ 0.994 669 0.999 C PGS_C09HBa0168F14.1-2-_SGN-E302620+ (60355 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57878) Alignment (genomic DNA sequence = upper lines): GAGTATCTCT GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATGGTACT ATTTCTCGTG 60296 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAGTATCTCT GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATG..... .......... 45 CTGAAATTTC CATTTCATTA CTGAAGATTT GCTGTTTATG TCGATTATAT TTAGTTTGAT 60236 .......... .......... .......... .......... .......... .......... 45 TTGATTAATT TGAATTGAAA AACTGTATGT TCGATGAAAT TGTTTGTTTG TAGTCGAGGA 60176 ||||||| .......... .......... .......... .......... .......... ...TCGAGGA 52 GAAAGACCAG GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG AGGGAAGGTG 60116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGACCAG GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG AGGGAAGGTG 112 AATTGGTGTT CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATTGTGAGTG 60056 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AATTGGTGTT CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATT....... 165 AGTTATGGTT TTTGAAAATT TGATGTAGAA ATGTAGATTT GGCTTTGTTA TTTGTGTGTT 59996 .......... .......... .......... .......... .......... .......... 165 TTACTGATTC TTAGTGTATG TGATGAATGC AGCACGTTAC TGATTTGTCT GGAAGAGAAA 59936 |||||||| |||||||||| |||||||||| .......... .......... .......... ..CACGTTAC TGATTTGTCT GGAAGAGAAA 193 CTATGGTTCG CATTACTGGT ATGCCTTATA GAAACAATTG TTTTATACTT TTGACTGTAT 59876 |||||||||| |||||||| CTATGGTTCG CATTACTG.. .......... .......... .......... .......... 211 CCTTGTAGTT ACTGATTAGC TGGTAGCAGT ATAATTGTTG CTTTCGATGC GAACATCGGT 59816 .......... .......... .......... .......... .......... .......... 211 TTATGTATAA ATGTAGATGC CTTTCTTCCA GGATGCTAAT TCTGTTGTTG TTATCCCTAT 59756 .......... .......... .......... .......... .......... .......... 211 TGGATAGACA TATATTTACT TTTTCAATAT AGATGAATGT AAGTGGTAGG AAATGTAGAG 59696 .......... .......... .......... .......... .......... .......... 211 CATCTATAGT TTTAGGGAAA TCAAGAATGT AGAGCATCTA TAGTTTTAGG GAATCCTTGA 59636 .......... .......... .......... .......... .......... .......... 211 TATGGTTGAG GCAGCAAATT ATTGGTATTA GAATATAATC CTTCTAGGAA GAAGGAAAAT 59576 .......... .......... .......... .......... .......... .......... 211 GGGTATAGAG GTTCCGTCTA GTGTGGAGTT TAATCTTAGT TGTTGATGTC GTAATGGTAT 59516 .......... .......... .......... .......... .......... .......... 211 GGAGAAGCCT TTCATCTCAA ATTGTTATAC ATTTTTGTTG CAGGTGGAAT GAAGGTGAAG 59456 ||||||| |||||||||| .......... .......... .......... .......... ...GTGGAAT GAAGGTGAAG 228 GCTGACAGAG ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG 59396 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGACAGAG ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG 288 CGATGCAAGG TAGTGTCTTG TTTGGTTCTG ATAAAGTCAA TTTCCTTAAT TCTACTTAAT 59336 ||||||||| CGATGCAAG. .......... .......... .......... .......... .......... 297 TGTTAGTTAA GCTCATCAGA TATAAAGTTG GTCTAGTTCA GGTCTATATC AATATAAACC 59276 .......... .......... .......... .......... .......... .......... 297 ATTTATGTAT GAACGAAAAA AATGAAGACT TTTTGCCTAT ATGGTACTGT TCACAGAGAT 59216 .......... .......... .......... .......... .......... .......... 297 TAATATTAGA TTTTATTTCT GAAGAAAGTC ACTATACTAA TTTCACTGGA TATTGATGTA 59156 .......... .......... .......... .......... .......... .......... 297 ATGTTTAGTT CTCCTGGATG TTGCATTCCA TGTTGGTGCA GGGATTTATC CTTTCTTGCA 59096 .......... .......... .......... .......... .......... .......... 297 TTGACCAGTA ATATAGGTGC CAAATTACAT AGCTCTTCTA TAAGTGTAGA GTGTTGCTTT 59036 .......... .......... .......... .......... .......... .......... 297 GTAGATAAAA TTTAGCAGTT TCGAAATTTA AGACCTTTTG GATCTTCTGA TGCCTCCCTT 58976 .......... .......... .......... .......... .......... .......... 297 TTCTGAATGT GTGCTAAAGC CAATAATTCT GCCGACTAGA CATTCGAAGA TCTTATAATG 58916 .......... .......... .......... .......... .......... .......... 297 TACATGATGG CCTTTACTCC TATCTATGTT TCTTGCTAGG ATGTAGATGG TCTATAAGAT 58856 .......... .......... .......... .......... .......... .......... 297 TGTTTTTGGG TTCCATATGC CTGATGCATC TTACTTTTGC TTAACAATAA AAAATTTGTG 58796 .......... .......... .......... .......... .......... .......... 297 TATAATTGAT TGGAATAAAT GCCATTCCTT CGAACATATT GTAGAGACCC GTAGATTTTA 58736 .......... .......... .......... .......... .......... .......... 297 TGTCACCGGT TTGGATCTAT TAGGCTTTGT TATGGAAGAT TCCATTCTGA AGTGATGTGT 58676 .......... .......... .......... .......... .......... .......... 297 GCACCTTCAA TTTTCGGACA CTTTTACCAC TAACAGTTGC ATAATCGCTG GTGGTGCTTG 58616 .......... .......... .......... .......... .......... .......... 297 AACTATGGAA AAATGTGTGC TTCAGATTCT ATTTAAGCGT CAAGGTTTCG GAATGGTGGT 58556 .......... .......... .......... .......... .......... .......... 297 CAGAATCATT GTTAATGGGT TCCATGCTAT GCCATTTATT CAGAGTCTAA ATATAGCTAC 58496 .......... .......... .......... .......... .......... .......... 297 ACTATATTTA AGACTCAAGC TCGGATACGT CCATCTTTAT CCATCTAGTC TGATGTCACT 58436 .......... .......... .......... .......... .......... .......... 297 AGGTCTCGTC ATCACTTGTT AATCTTTTAA AATATTATTT ATGAACTTTT GATTTACAGG 58376 | .......... .......... .......... .......... .......... .........G 298 AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA 58316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA 358 CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG 58256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG 418 GACGTATAGG TACATAAGCT TTTCTCTCTT GCATCAGTAT CGTATCATGG CAAAGTTCTC 58196 ||||||||| GACGTATAG. .......... .......... .......... .......... .......... 427 GTAATATGCT CCATATAATC TGTTGTATCA TTGTTATGTC ATCACTTTTA AGTAATTCTT 58136 .......... .......... .......... .......... .......... .......... 427 CCTATATATT TTGCAGAGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT 58076 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT 471 GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG 58016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG 531 GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA 57956 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATG TATTTACATT TGATTTCTGA 591 ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGC-T 57897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT 651 TTTCGAGATA GTTAAGTTC 57878 |||||||||| ||||||||| TTTCGAGATA GTTAAGTTC 670 hqPGS_C09HBa0168F14.1-2-_SGN-E302620+ (60355 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57878) ******************************************************************************** EST sequence 144 +strand 681 n (File: SGN-E346811+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAATTGGAGG AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT 601 TTCTGAACAC TCTGTAGTTG AGCACTTTTG GTTTCGAAAC CACCTTCATT TTGAGTTTGC 661 CAGCTTTTCG AGATAAAAAA A Predicted gene structure (within gDNA segment 60970 to 57217): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57882 ( 238 n); cDNA 443 680 ( 238 n); score: 0.987 MATCH C09HBa0168F14.1-2- SGN-E346811+ 0.995 680 0.999 C PGS_C09HBa0168F14.1-2-_SGN-E346811+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57882) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 57971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 591 ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 57911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTGATT TCTGAACACT CTGTAGTTGA GCACTTTTGG TTTCGAAACC ACCTTCATTT 651 TGAGTTTGCC AGCTTTTCGA GATAGTTAA 57882 |||||||||| |||||||||| |||| || TGAGTTTGCC AGCTTTTCGA GATAAAAAA 680 hqPGS_C09HBa0168F14.1-2-_SGN-E346811+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57882) ******************************************************************************** EST sequence 205 +strand 662 n (File: SGN-E345236+) 1 TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT CGAGGAGAAA 61 GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG AAGGTGAATT 121 GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC ACGTTACTGA 181 TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA AGGCTGACAG 241 AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC AGCGATGCAA 301 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 361 GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 421 TGGACGTATA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA AGGGTGGTAG 481 AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA GCATGTTGCA AATTGGAGGA 541 AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT ACATTTGATT TCTGAACACT 601 CTGTAGTTGA GCACTTTTTG GTTTCGAAAC CACCTTCATT TTGAGTTTGC CAGCTTTTCG 661 AG Predicted gene structure (within gDNA segment 60959 to 57280): Exon 1 60359 60311 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 50 169 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 170 215 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 216 301 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 302 431 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57890 ( 230 n); cDNA 432 662 ( 231 n); score: 0.989 MATCH C09HBa0168F14.1-2- SGN-E345236+ 0.996 661 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E345236+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57890) Alignment (genomic DNA sequence = upper lines): TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGG TACTATTTCT 60300 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATG. .......... 49 CGTGCTGAAA TTTCCATTTC ATTACTGAAG ATTTGCTGTT TATGTCGATT ATATTTAGTT 60240 .......... .......... .......... .......... .......... .......... 49 TGATTTGATT AATTTGAATT GAAAAACTGT ATGTTCGATG AAATTGTTTG TTTGTAGTCG 60180 ||| .......... .......... .......... .......... .......... .......TCG 52 AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 60120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 112 GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATTGTG 60060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATT... 169 AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT GTTATTTGTG 60000 .......... .......... .......... .......... .......... .......... 169 TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT GTCTGGAAGA 59940 |||| |||||||||| |||||||||| .......... .......... .......... ......CACG TTACTGATTT GTCTGGAAGA 193 GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT ACTTTTGACT 59880 |||||||||| |||||||||| || GAAACTATGG TTCGCATTAC TG........ .......... .......... .......... 215 GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG ATGCGAACAT 59820 .......... .......... .......... .......... .......... .......... 215 CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT GTTGTTATCC 59760 .......... .......... .......... .......... .......... .......... 215 CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG TAGGAAATGT 59700 .......... .......... .......... .......... .......... .......... 215 AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT TAGGGAATCC 59640 .......... .......... .......... .......... .......... .......... 215 TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA GGAAGAAGGA 59580 .......... .......... .......... .......... .......... .......... 215 AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA TGTCGTAATG 59520 .......... .......... .......... .......... .......... .......... 215 GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG GAATGAAGGT 59460 ||| |||||||||| .......... .......... .......... .......... .......GTG GAATGAAGGT 228 GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 59400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 288 ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT TAATTCTACT 59340 |||||||||| ||| ACAGCGATGC AAG....... .......... .......... .......... .......... 301 TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA TATCAATATA 59280 .......... .......... .......... .......... .......... .......... 301 AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA CTGTTCACAG 59220 .......... .......... .......... .......... .......... .......... 301 AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC TGGATATTGA 59160 .......... .......... .......... .......... .......... .......... 301 TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT TATCCTTTCT 59100 .......... .......... .......... .......... .......... .......... 301 TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG TAGAGTGTTG 59040 .......... .......... .......... .......... .......... .......... 301 CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT CTGATGCCTC 58980 .......... .......... .......... .......... .......... .......... 301 CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG AAGATCTTAT 58920 .......... .......... .......... .......... .......... .......... 301 AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG ATGGTCTATA 58860 .......... .......... .......... .......... .......... .......... 301 AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA ATAAAAAATT 58800 .......... .......... .......... .......... .......... .......... 301 TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG ACCCGTAGAT 58740 .......... .......... .......... .......... .......... .......... 301 TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT CTGAAGTGAT 58680 .......... .......... .......... .......... .......... .......... 301 GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC GCTGGTGGTG 58620 .......... .......... .......... .......... .......... .......... 301 CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT TTCGGAATGG 58560 .......... .......... .......... .......... .......... .......... 301 TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT CTAAATATAG 58500 .......... .......... .......... .......... .......... .......... 301 CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT AGTCTGATGT 58440 .......... .......... .......... .......... .......... .......... 301 CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC TTTTGATTTA 58380 .......... .......... .......... .......... .......... .......... 301 CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 58320 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 358 AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 58260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 418 ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC ATGGCAAAGT 58200 |||||||||| ||| ATTGGACGTA TAG....... .......... .......... .......... .......... 431 TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT TTTAAGTAAT 58140 .......... .......... .......... .......... .......... .......... 431 TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGCAGAAA 58080 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGCAGAAA 471 GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAG CATGTTGCAA 58020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAG CATGTTGCAA 531 ATTGGAGGAA AATATTGTTG TCGAAAAATG CAGCTTTCGA TATCTATTTA CATTTGATTT 57960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGAGGAA AATATTGTTG TCGAAAAATG CAGCTTTCGA TATCTATTTA CATTTGATTT 591 CTGAACACTC TGTAGTTGAG CAC-TTTTGG TTTCGAAACC ACCTTCATTT TGAGTTTGCC 57901 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| CTGAACACTC TGTAGTTGAG CACTTTTTGG TTTCGAAACC ACCTTCATTT TGAGTTTGCC 651 AGCTTTTCGA G 57890 |||||||||| | AGCTTTTCGA G 662 hqPGS_C09HBa0168F14.1-2-_SGN-E345236+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57890) ******************************************************************************** EST sequence 159 +strand 631 n (File: SGN-E328300+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG 181 TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG 241 CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC 301 GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 361 AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA 421 TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 481 GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 541 TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT 601 GAACACTCTG TAGTTGAGCA CTTTTGGTTT C Predicted gene structure (within gDNA segment 60966 to 57317): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57927 ( 193 n); cDNA 439 631 ( 193 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E328300+ 1.000 631 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E328300+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57927) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 172 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 176 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 193 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 222 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 222 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 222 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 222 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 222 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 222 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 222 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 228 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 288 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 308 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 308 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 308 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 308 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 308 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 308 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 308 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 308 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 308 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 308 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 308 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 308 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 308 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 308 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 308 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 308 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 308 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 358 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 418 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 438 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 438 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 471 GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 58027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 531 GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 57967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 591 TTGATTTCTG AACACTCTGT AGTTGAGCAC TTTTGGTTTC 57927 |||||||||| |||||||||| |||||||||| |||||||||| TTGATTTCTG AACACTCTGT AGTTGAGCAC TTTTGGTTTC 631 hqPGS_C09HBa0168F14.1-2-_SGN-E328300+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57927) ******************************************************************************** EST sequence 160 +strand 626 n (File: SGN-E340828+) 1 TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT CGAGGAGAAA 61 GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG AAGGTGAATT 121 GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC ACGTTACTGA 181 TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA AGGCTGACAG 241 AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC AGCGATGCAA 301 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 361 GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 421 TGGACGTATA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA AGGGTGGTTA 481 GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC AAATTGGAGG 541 AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT TTCTGAACAC 601 TCTGTAGTTG AGCACTTTTT GGTTTC Predicted gene structure (within gDNA segment 60959 to 57253): Exon 1 60359 60311 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 50 169 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 170 215 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 216 301 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 302 431 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0.95) Exon 6 58119 57927 ( 193 n); cDNA 432 626 ( 195 n); score: 0.974 MATCH C09HBa0168F14.1-2- SGN-E340828+ 0.991 624 0.997 C PGS_C09HBa0168F14.1-2-_SGN-E340828+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57927) Alignment (genomic DNA sequence = upper lines): TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGG TACTATTTCT 60300 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATG. .......... 49 CGTGCTGAAA TTTCCATTTC ATTACTGAAG ATTTGCTGTT TATGTCGATT ATATTTAGTT 60240 .......... .......... .......... .......... .......... .......... 49 TGATTTGATT AATTTGAATT GAAAAACTGT ATGTTCGATG AAATTGTTTG TTTGTAGTCG 60180 ||| .......... .......... .......... .......... .......... .......TCG 52 AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 60120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 112 GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATTGTG 60060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATT... 169 AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT GTTATTTGTG 60000 .......... .......... .......... .......... .......... .......... 169 TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT GTCTGGAAGA 59940 |||| |||||||||| |||||||||| .......... .......... .......... ......CACG TTACTGATTT GTCTGGAAGA 193 GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT ACTTTTGACT 59880 |||||||||| |||||||||| || GAAACTATGG TTCGCATTAC TG........ .......... .......... .......... 215 GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG ATGCGAACAT 59820 .......... .......... .......... .......... .......... .......... 215 CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT GTTGTTATCC 59760 .......... .......... .......... .......... .......... .......... 215 CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG TAGGAAATGT 59700 .......... .......... .......... .......... .......... .......... 215 AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT TAGGGAATCC 59640 .......... .......... .......... .......... .......... .......... 215 TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA GGAAGAAGGA 59580 .......... .......... .......... .......... .......... .......... 215 AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA TGTCGTAATG 59520 .......... .......... .......... .......... .......... .......... 215 GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG GAATGAAGGT 59460 ||| |||||||||| .......... .......... .......... .......... .......GTG GAATGAAGGT 228 GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 59400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 288 ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT TAATTCTACT 59340 |||||||||| ||| ACAGCGATGC AAG....... .......... .......... .......... .......... 301 TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA TATCAATATA 59280 .......... .......... .......... .......... .......... .......... 301 AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA CTGTTCACAG 59220 .......... .......... .......... .......... .......... .......... 301 AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC TGGATATTGA 59160 .......... .......... .......... .......... .......... .......... 301 TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT TATCCTTTCT 59100 .......... .......... .......... .......... .......... .......... 301 TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG TAGAGTGTTG 59040 .......... .......... .......... .......... .......... .......... 301 CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT CTGATGCCTC 58980 .......... .......... .......... .......... .......... .......... 301 CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG AAGATCTTAT 58920 .......... .......... .......... .......... .......... .......... 301 AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG ATGGTCTATA 58860 .......... .......... .......... .......... .......... .......... 301 AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA ATAAAAAATT 58800 .......... .......... .......... .......... .......... .......... 301 TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG ACCCGTAGAT 58740 .......... .......... .......... .......... .......... .......... 301 TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT CTGAAGTGAT 58680 .......... .......... .......... .......... .......... .......... 301 GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC GCTGGTGGTG 58620 .......... .......... .......... .......... .......... .......... 301 CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT TTCGGAATGG 58560 .......... .......... .......... .......... .......... .......... 301 TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT CTAAATATAG 58500 .......... .......... .......... .......... .......... .......... 301 CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT AGTCTGATGT 58440 .......... .......... .......... .......... .......... .......... 301 CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC TTTTGATTTA 58380 .......... .......... .......... .......... .......... .......... 301 CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 58320 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 358 AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 58260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 418 ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC ATGGCAAAGT 58200 |||||||||| ||| ATTGGACGTA TAG....... .......... .......... .......... .......... 431 TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT TTTAAGTAAT 58140 .......... .......... .......... .......... .......... .......... 431 TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGCAGAAA 58080 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGCAGAAA 471 GGGTGG-TAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA GCATGTTGCA 58021 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTGGTTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA GCATGTTGCA 531 AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT ACATTTGATT 57961 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT ACATTTGATT 591 TCTGAACACT CTGTAGTTGA GCAC-TTTTG GTTTC 57927 |||||||||| |||||||||| |||| ||||| ||||| TCTGAACACT CTGTAGTTGA GCACTTTTTG GTTTC 626 hqPGS_C09HBa0168F14.1-2-_SGN-E340828+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57927) ******************************************************************************** EST sequence 123 +strand 623 n (File: SGN-E346699+) 1 GGTTTCTTCA AGCTGCTGAG TATCTCTGAA TTTTCTCACT ATCAAGCTCA GCTGAAGCCA 61 TGTCGAGGAG AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA 121 GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT GATACATTCA 181 TTCACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG CATTACTGGT GGAATGAAGG 241 TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT CAGGATGTGT 301 CACAGCGATG CAAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 361 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 421 CTGGCATGAA AATTGGACGT ATAGAGGATG TTACTCCAAT TCCCACCGAT AGTACTCGCA 481 GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT GCAGCATGTT 541 GCAAATTGGA GGAAAATATT NGTTGTCGAA AAATGCAGCT TTCGATATCT ATTTACATTT 601 GATTTCTGAA CACTCTGTAG TTG Predicted gene structure (within gDNA segment 60972 to 57332): Exon 1 60372 60311 ( 62 n); cDNA 1 62 ( 62 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 63 182 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 183 228 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 229 314 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 315 444 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57942 ( 178 n); cDNA 445 623 ( 179 n); score: 0.986 MATCH C09HBa0168F14.1-2- SGN-E346699+ 0.996 622 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E346699+ (60372 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57942) Alignment (genomic DNA sequence = upper lines): GGTTTCTTCA AGCTGCTGAG TATCTCTGAA TTTTCTCACT ATCAAGCTCA GCTGAAGCCA 60313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCTTCA AGCTGCTGAG TATCTCTGAA TTTTCTCACT ATCAAGCTCA GCTGAAGCCA 60 TGGTACTATT TCTCGTGCTG AAATTTCCAT TTCATTACTG AAGATTTGCT GTTTATGTCG 60253 || TG........ .......... .......... .......... .......... .......... 62 ATTATATTTA GTTTGATTTG ATTAATTTGA ATTGAAAAAC TGTATGTTCG ATGAAATTGT 60193 .......... .......... .......... .......... .......... .......... 62 TTGTTTGTAG TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC 60133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC 112 AGCAACGAGG GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA 60073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAACGAGG GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA 172 TACATTCATT GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC 60013 |||||||||| TACATTCATT .......... .......... .......... .......... .......... 182 TTTGTTATTT GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA 59953 | |||||||||| .......... .......... .......... .......... .........C ACGTTACTGA 193 TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT 59893 |||||||||| |||||||||| |||||||||| ||||| TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTG..... .......... .......... 228 TATACTTTTG ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT 59833 .......... .......... .......... .......... .......... .......... 228 TCGATGCGAA CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT 59773 .......... .......... .......... .......... .......... .......... 228 GTTGTTGTTA TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG 59713 .......... .......... .......... .......... .......... .......... 228 TGGTAGGAAA TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG 59653 .......... .......... .......... .......... .......... .......... 228 TTTTAGGGAA TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT 59593 .......... .......... .......... .......... .......... .......... 228 CTAGGAAGAA GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT 59533 .......... .......... .......... .......... .......... .......... 228 TGATGTCGTA ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG 59473 .......... .......... .......... .......... .......... .......... 228 GTGGAATGAA GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG 59413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAATGAA GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG 288 CTCAGGATGT GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT 59353 |||||||||| |||||||||| |||||| CTCAGGATGT GTCACAGCGA TGCAAG.... .......... .......... .......... 314 CCTTAATTCT ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT 59293 .......... .......... .......... .......... .......... .......... 314 CTATATCAAT ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG 59233 .......... .......... .......... .......... .......... .......... 314 GTACTGTTCA CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT 59173 .......... .......... .......... .......... .......... .......... 314 CACTGGATAT TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG 59113 .......... .......... .......... .......... .......... .......... 314 ATTTATCCTT TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA 59053 .......... .......... .......... .......... .......... .......... 314 GTGTAGAGTG TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT 58993 .......... .......... .......... .......... .......... .......... 314 CTTCTGATGC CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT 58933 .......... .......... .......... .......... .......... .......... 314 TCGAAGATCT TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG 58873 .......... .......... .......... .......... .......... .......... 314 TAGATGGTCT ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA 58813 .......... .......... .......... .......... .......... .......... 314 ACAATAAAAA ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA 58753 .......... .......... .......... .......... .......... .......... 314 GAGACCCGTA GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC 58693 .......... .......... .......... .......... .......... .......... 314 ATTCTGAAGT GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA 58633 .......... .......... .......... .......... .......... .......... 314 ATCGCTGGTG GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA 58573 .......... .......... .......... .......... .......... .......... 314 GGTTTCGGAA TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG 58513 .......... .......... .......... .......... .......... .......... 314 AGTCTAAATA TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA 58453 .......... .......... .......... .......... .......... .......... 314 TCTAGTCTGA TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG 58393 .......... .......... .......... .......... .......... .......... 314 AACTTTTGAT TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG 58333 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG 358 AGGCAACAAG ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG 58273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAACAAG ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG 418 TTCTGGCATG AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT 58213 |||||||||| |||||||||| |||||| TTCTGGCATG AAAATTGGAC GTATAG.... .......... .......... .......... 444 ATCATGGCAA AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC 58153 .......... .......... .......... .......... .......... .......... 444 ACTTTTAAGT AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA 58093 ||||||| |||||||||| |||||||||| .......... .......... .......... ...AGGATGT TACTCCAATT CCCACCGATA 471 GTACTCGCAG AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG 58033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTCGCAG AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG 531 CAGCATGTTG CAAATTGGAG GAAAATATT- GTTGTCGAAA AATGCAGCTT TCGATATCTA 57974 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CAGCATGTTG CAAATTGGAG GAAAATATTN GTTGTCGAAA AATGCAGCTT TCGATATCTA 591 TTTACATTTG ATTTCTGAAC ACTCTGTAGT TG 57942 |||||||||| |||||||||| |||||||||| || TTTACATTTG ATTTCTGAAC ACTCTGTAGT TG 623 hqPGS_C09HBa0168F14.1-2-_SGN-E346699+ (60372 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57942) ******************************************************************************** EST sequence 135 +strand 623 n (File: SGN-E340321+) 1 GTTTCTTCAA GCTGCTGAGT ATCTCTGAAT TTTCTCACTA TCAAGCTCAG CTGAAGCCAT 61 GTCGAGGAGA AAGACCAGGG AGCCTAAGGA AGAGACTGTT ACACTTGGAC CAGCAACGAG 121 GGAAGGTGAA TTGGTGTTCG GTGTTGCACA CATTTTTGCA TCGTTCAATG ATACATTCAT 181 TCACGTTACT GATTTGTCTG GAAGAGAAAC TATGGTTCGC ATTACTGGTG GAATGAAGGT 241 GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 301 ACAGCGATGC AAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 361 CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC 421 TGGCATGAAA ATTGGACGTA TAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 481 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 541 CAAATTGGAG GAAAANTATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTT 601 GATTTCTGAA CACTCTGTAG TTG Predicted gene structure (within gDNA segment 60971 to 57332): Exon 1 60371 60311 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 62 181 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 182 227 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 228 313 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 314 443 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57942 ( 178 n); cDNA 444 623 ( 180 n); score: 0.972 MATCH C09HBa0168F14.1-2- SGN-E340321+ 0.991 621 0.997 C PGS_C09HBa0168F14.1-2-_SGN-E340321+ (60371 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57942) Alignment (genomic DNA sequence = upper lines): GTTTCTTCAA GCTGCTGAGT ATCTCTGAAT TTTCTCACTA TCAAGCTCAG CTGAAGCCAT 60312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCTTCAA GCTGCTGAGT ATCTCTGAAT TTTCTCACTA TCAAGCTCAG CTGAAGCCAT 60 GGTACTATTT CTCGTGCTGA AATTTCCATT TCATTACTGA AGATTTGCTG TTTATGTCGA 60252 | G......... .......... .......... .......... .......... .......... 61 TTATATTTAG TTTGATTTGA TTAATTTGAA TTGAAAAACT GTATGTTCGA TGAAATTGTT 60192 .......... .......... .......... .......... .......... .......... 61 TGTTTGTAGT CGAGGAGAAA GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA 60132 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........T CGAGGAGAAA GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA 112 GCAACGAGGG AAGGTGAATT GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT 60072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACGAGGG AAGGTGAATT GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT 172 ACATTCATTG TGAGTGAGTT ATGGTTTTTG AAAATTTGAT GTAGAAATGT AGATTTGGCT 60012 ||||||||| ACATTCATT. .......... .......... .......... .......... .......... 181 TTGTTATTTG TGTGTTTTAC TGATTCTTAG TGTATGTGAT GAATGCAGCA CGTTACTGAT 59952 || |||||||||| .......... .......... .......... .......... ........CA CGTTACTGAT 193 TTGTCTGGAA GAGAAACTAT GGTTCGCATT ACTGGTATGC CTTATAGAAA CAATTGTTTT 59892 |||||||||| |||||||||| |||||||||| |||| TTGTCTGGAA GAGAAACTAT GGTTCGCATT ACTG...... .......... .......... 227 ATACTTTTGA CTGTATCCTT GTAGTTACTG ATTAGCTGGT AGCAGTATAA TTGTTGCTTT 59832 .......... .......... .......... .......... .......... .......... 227 CGATGCGAAC ATCGGTTTAT GTATAAATGT AGATGCCTTT CTTCCAGGAT GCTAATTCTG 59772 .......... .......... .......... .......... .......... .......... 227 TTGTTGTTAT CCCTATTGGA TAGACATATA TTTACTTTTT CAATATAGAT GAATGTAAGT 59712 .......... .......... .......... .......... .......... .......... 227 GGTAGGAAAT GTAGAGCATC TATAGTTTTA GGGAAATCAA GAATGTAGAG CATCTATAGT 59652 .......... .......... .......... .......... .......... .......... 227 TTTAGGGAAT CCTTGATATG GTTGAGGCAG CAAATTATTG GTATTAGAAT ATAATCCTTC 59592 .......... .......... .......... .......... .......... .......... 227 TAGGAAGAAG GAAAATGGGT ATAGAGGTTC CGTCTAGTGT GGAGTTTAAT CTTAGTTGTT 59532 .......... .......... .......... .......... .......... .......... 227 GATGTCGTAA TGGTATGGAG AAGCCTTTCA TCTCAAATTG TTATACATTT TTGTTGCAGG 59472 | .......... .......... .......... .......... .......... .........G 228 TGGAATGAAG GTGAAGGCTG ACAGAGATGA GTCTTCTCCG TATGCTGCTA TGCTTGCAGC 59412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATGAAG GTGAAGGCTG ACAGAGATGA GTCTTCTCCG TATGCTGCTA TGCTTGCAGC 288 TCAGGATGTG TCACAGCGAT GCAAGGTAGT GTCTTGTTTG GTTCTGATAA AGTCAATTTC 59352 |||||||||| |||||||||| ||||| TCAGGATGTG TCACAGCGAT GCAAG..... .......... .......... .......... 313 CTTAATTCTA CTTAATTGTT AGTTAAGCTC ATCAGATATA AAGTTGGTCT AGTTCAGGTC 59292 .......... .......... .......... .......... .......... .......... 313 TATATCAATA TAAACCATTT ATGTATGAAC GAAAAAAATG AAGACTTTTT GCCTATATGG 59232 .......... .......... .......... .......... .......... .......... 313 TACTGTTCAC AGAGATTAAT ATTAGATTTT ATTTCTGAAG AAAGTCACTA TACTAATTTC 59172 .......... .......... .......... .......... .......... .......... 313 ACTGGATATT GATGTAATGT TTAGTTCTCC TGGATGTTGC ATTCCATGTT GGTGCAGGGA 59112 .......... .......... .......... .......... .......... .......... 313 TTTATCCTTT CTTGCATTGA CCAGTAATAT AGGTGCCAAA TTACATAGCT CTTCTATAAG 59052 .......... .......... .......... .......... .......... .......... 313 TGTAGAGTGT TGCTTTGTAG ATAAAATTTA GCAGTTTCGA AATTTAAGAC CTTTTGGATC 58992 .......... .......... .......... .......... .......... .......... 313 TTCTGATGCC TCCCTTTTCT GAATGTGTGC TAAAGCCAAT AATTCTGCCG ACTAGACATT 58932 .......... .......... .......... .......... .......... .......... 313 CGAAGATCTT ATAATGTACA TGATGGCCTT TACTCCTATC TATGTTTCTT GCTAGGATGT 58872 .......... .......... .......... .......... .......... .......... 313 AGATGGTCTA TAAGATTGTT TTTGGGTTCC ATATGCCTGA TGCATCTTAC TTTTGCTTAA 58812 .......... .......... .......... .......... .......... .......... 313 CAATAAAAAA TTTGTGTATA ATTGATTGGA ATAAATGCCA TTCCTTCGAA CATATTGTAG 58752 .......... .......... .......... .......... .......... .......... 313 AGACCCGTAG ATTTTATGTC ACCGGTTTGG ATCTATTAGG CTTTGTTATG GAAGATTCCA 58692 .......... .......... .......... .......... .......... .......... 313 TTCTGAAGTG ATGTGTGCAC CTTCAATTTT CGGACACTTT TACCACTAAC AGTTGCATAA 58632 .......... .......... .......... .......... .......... .......... 313 TCGCTGGTGG TGCTTGAACT ATGGAAAAAT GTGTGCTTCA GATTCTATTT AAGCGTCAAG 58572 .......... .......... .......... .......... .......... .......... 313 GTTTCGGAAT GGTGGTCAGA ATCATTGTTA ATGGGTTCCA TGCTATGCCA TTTATTCAGA 58512 .......... .......... .......... .......... .......... .......... 313 GTCTAAATAT AGCTACACTA TATTTAAGAC TCAAGCTCGG ATACGTCCAT CTTTATCCAT 58452 .......... .......... .......... .......... .......... .......... 313 CTAGTCTGAT GTCACTAGGT CTCGTCATCA CTTGTTAATC TTTTAAAATA TTATTTATGA 58392 .......... .......... .......... .......... .......... .......... 313 ACTTTTGATT TACAGGAACT TGGAATTAAT GCTCTTCACA TTAAGCTCCG AGCTACAGGA 58332 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GAACT TGGAATTAAT GCTCTTCACA TTAAGCTCCG AGCTACAGGA 358 GGCAACAAGA CCAAGACTCC TGGTCCTGGT GCCCAGTCCG CTCTTAGAGC TTTGGCTCGT 58272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAACAAGA CCAAGACTCC TGGTCCTGGT GCCCAGTCCG CTCTTAGAGC TTTGGCTCGT 418 TCTGGCATGA AAATTGGACG TATAGGTACA TAAGCTTTTC TCTCTTGCAT CAGTATCGTA 58212 |||||||||| |||||||||| ||||| TCTGGCATGA AAATTGGACG TATAG..... .......... .......... .......... 443 TCATGGCAAA GTTCTCGTAA TATGCTCCAT ATAATCTGTT GTATCATTGT TATGTCATCA 58152 .......... .......... .......... .......... .......... .......... 443 CTTTTAAGTA ATTCTTCCTA TATATTTTGC AGAGGATGTT ACTCCAATTC CCACCGATAG 58092 |||||||| |||||||||| |||||||||| .......... .......... .......... ..AGGATGTT ACTCCAATTC CCACCGATAG 471 TACTCGCAGA AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC 58032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTCGCAGA AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC 531 AGCATGTTGC AAATTGGAGG AAAA-TATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT 57973 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AGCATGTTGC AAATTGGAGG AAAANTATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT 591 TTACA-TTTG ATTTCTGAAC ACTCTGTAGT TG 57942 ||||| |||| |||||||||| |||||||||| || TTACATTTTG ATTTCTGAAC ACTCTGTAGT TG 623 hqPGS_C09HBa0168F14.1-2-_SGN-E340321+ (60371 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57942) ******************************************************************************** EST sequence 22 -strand 754 n (File: SGN-E371544-) 1 TTTTTCAAGC TTCAGCAGCA GCAGCAGCAG CACACCTGCA AATCAACCTT AGCCATGTCG 61 AGGAGAAAGA CCAGAGAGCC CAAGGAAGAG ACTGTTACCC TTGGACCAGC TACCAGGGAA 121 GGTGAATTGG TCTTTGGTGT TGCTCACATT TTCGCCTCTT TCAATGACAC ATTCATTCAT 181 GTGACTGATT TGTCTGGACG CGAAACAATG GTTCGCATTA CTGGTGGCAT GAAGGTGAAG 241 GCTGACAGAG ATGAATCTTC TCCTTATGCT GCTATGCTTG CAGCACAAGA TGTTTCTCAA 301 CGATGCAAGG AGCTTGGAAT TAATGCCCTT CACATTAAGC TTCGGGCTAC AGGTGGGAAC 361 AAAACCAAGA CTCCTGGTCC TGGTGCCCAG TCTGCTCTTA GAGCCCTTGC TCGATCCGGA 421 ATGAAAATTG GACGCATAGA GGATGTTACT CCTATTCCCA CCGACAGTAC TCGCAGAAAG 481 GGTGGTAGAA GAGGAAGGAG GCTGTGAATT CTTCTCAGCA ACATACATGC TACATGGCGG 541 AATATTTTGG TTAAGAATGC AACTCTGTTT GTGTTTTACA ACTTAGTTTT GAACATTTTG 601 TAGCCAGAGT TGCAAGTCAT TTTGACTTGT GATCATTTGG AGCTTTTTCA ATCTTGTGAG 661 ATGGAAATTA TTTTGTTGAG TTGGATTAGC AAGTTGACTT CGTCATTATC TTCATTAAAA 721 ATTGAACACT TTTTGTTGCT TAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 61353 to 54391): Exon 1 60182 60063 ( 120 n); cDNA 58 177 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 178 223 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 224 309 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 310 439 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 57943 ( 177 n); cDNA 440 605 ( 166 n); score: 0.740 Intron 5 57942 55378 (2565 n); Pd: 0.000 (s: 0.66), Pa: 0.912 (s: 0) Exon 6 55377 55351 ( 27 n); cDNA 606 632 ( 27 n); score: 0.630 PPA cDNA 742 754 MATCH C09HBa0168F14.1-2- SGN-E371544- 0.842 586 0.777 C PGS_C09HBa0168F14.1-2-_SGN-E371544- (60182 60063,59963 59918,59472 59387,58376 58247,58119 57943,55377 55351) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 117 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 177 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 177 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 198 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 223 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 223 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 223 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 223 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 223 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 223 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 223 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 233 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 293 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 309 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 309 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 309 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 309 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 309 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 309 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 309 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 309 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 309 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 309 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 309 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 309 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 309 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 309 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 309 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 309 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 309 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 363 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 423 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 439 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 439 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 476 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| ||||| |||| |||||||||| | | || || ||| | || | || AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG -A-ATTC-TT CTC--AGCAA CA-TA-CATG 529 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 | | ||| | | |||||| ||| || | ||||| || | | | | | ||||| | | CTACATGGCG G--AATATT- TTGGTTAAGA ATGCAACTCT GTTTGTGT-T TTACAACTTA 585 TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG 57903 || |||||| | ||||| GTTTTGAACA TTTTGTAGCC .......... .......... .......... .......... 605 CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT 57843 .......... .......... .......... .......... .......... .......... 605 AAATTTATAC TCTTTTTATC TTCACAATTC TGTTAGTTAT AAAGCTTTAT TTCATTATGG 57783 .......... .......... .......... .......... .......... .......... 605 ATATATACTT GATAAAACGA ATTGCATAAA CAACTGTTTT CAGGACGTTG TATAGTCGAA 57723 .......... .......... .......... .......... .......... .......... 605 ATTTATAAAG ATGAAATTGA GATTTTGAAA TTATACAATT TTAGTATAAA TATTTGAATA 57663 .......... .......... .......... .......... .......... .......... 605 AAATCATTCA AAGATTAACT ATTATTTCAA AGTAAAACAT GGAATAAAGT TTAACCCCCA 57603 .......... .......... .......... .......... .......... .......... 605 AATAGTATTT TGAAACAAGC TATGTTTGAA ATAAAAAGAT ACCTTTCAAT AACAAATTGG 57543 .......... .......... .......... .......... .......... .......... 605 AAAATTAGGA AGTCTTATAT TAAAGACTAG TAAAAACAAC TTTTACATGC ATTATTTACT 57483 .......... .......... .......... .......... .......... .......... 605 TGAAGAGGAA AGACTCAAAT ATGTCATCGT ATTAAAAATT TGACTCATCA TTCATATCAT 57423 .......... .......... .......... .......... .......... .......... 605 TATTTGTTAA TTGAAATGAT ATATATGAAT CAATTTTTTT TTAAAATGAC ATAAATGAAT 57363 .......... .......... .......... .......... .......... .......... 605 CTTTTTTTTT TTATAAGTTT GATGACATGC TTGAGTTTTT GTCCTTTTTA AAACGTGATT 57303 .......... .......... .......... .......... .......... .......... 605 TAATTAATGT CATCCATATC ACATGTAAAA GATAATTTTG CAAAATCAAA ACTGTTTTTA 57243 .......... .......... .......... .......... .......... .......... 605 GGTAACAAAT AATGACATGG ATAAATTTTT TTTATAAAAA GAAAAATGAC ATAAATAAAC 57183 .......... .......... .......... .......... .......... .......... 605 TAAACTTTTA ACGATTGATG TACATGAATC TTTTTCTCAA AGTTCGATGA CACATTTGAA 57123 .......... .......... .......... .......... .......... .......... 605 GTTTTCTCTT TATTAAAAGA TTTCTTTGTT TTTTTTTTGC AAGAAATGGA TCTTCAATTT 57063 .......... .......... .......... .......... .......... .......... 605 GGGCCTATAC AGATCTCTTC GGCCCAACCA GCAATATGTA GGTCCATTCA CTCTTTAGCC 57003 .......... .......... .......... .......... .......... .......... 605 CATTAATCCT ATGCTAAAAC CCTAATTGTT GAGTCTATAA ATCTCTATTT TTCACTTCAA 56943 .......... .......... .......... .......... .......... .......... 605 TAATTTGGGG ATCAATCCCC AATGTAGCCG AATCTTTGTG AGTTTCTTCT TCATTGCTTA 56883 .......... .......... .......... .......... .......... .......... 605 TCGTATTGAA TTTCTTCGTG TATGGTGTTT TTCCTCTTTT TGATTTCATG TTTTAATGGG 56823 .......... .......... .......... .......... .......... .......... 605 TTAATAACTG AAACCTCTTA TGCAATTTAG TTTGCTAACA GTGGAAGTTA TAATACCCTA 56763 .......... .......... .......... .......... .......... .......... 605 TAATTATTTG CCATTTTCAA CTTAGTCAGC TGTGTTTCTC TGTTGCAGTT GATTATCGTG 56703 .......... .......... .......... .......... .......... .......... 605 ACTGGTAAAC TCAAAATTAT GTTATAAACC GAAAATTTTT ACATGAATTT TAGGGGTTTT 56643 .......... .......... .......... .......... .......... .......... 605 GCTTTTATGT TGCTTTGGTT GTCCAAAATG CAGTTGGGTG TGTAGTGGTT TTTCTTAAAA 56583 .......... .......... .......... .......... .......... .......... 605 ATTGTTTTTT TTGTATGTGA AGTGTGTATG ATGCGTGGAT TGATCAAAAT GCTATTGGGT 56523 .......... .......... .......... .......... .......... .......... 605 ATGCATTAAT TTCTCTTAAA GATGTGATTT TTGGAATATG TTGCAACATT TTGATCGATT 56463 .......... .......... .......... .......... .......... .......... 605 GGAGCTATAT AACAAAGTGT GTTGTGTATG GATTAATTTG TTTCATTTTG CGCCGCCCTT 56403 .......... .......... .......... .......... .......... .......... 605 AAGATCGCCT TCCATTATGC TCCATGGAAG CGTTTTGAGT CATAGCTGCG CTATATTAAT 56343 .......... .......... .......... .......... .......... .......... 605 TGTATATATG CACACTCTTT TGTATGTACA ATTGTATATA TGAAAGGTGT GTTATATGCT 56283 .......... .......... .......... .......... .......... .......... 605 GGAGTTTTCT CTTTAGGGTT TTCCTTTAGT GAGTCTCCTT TTGCCTCGCC TTATTTCAGG 56223 .......... .......... .......... .......... .......... .......... 605 AGTCATATCC TTTTTTTTTG GTTTTGTCTT TCCCAATTGG GGATATAGAA CCAAAAGATG 56163 .......... .......... .......... .......... .......... .......... 605 TTTTGAATGG CTCTAGTTGA GGTGGGGTGT ACATTATTTT GTGATTTTTG TTTATTATAT 56103 .......... .......... .......... .......... .......... .......... 605 TTCCTTGTTC TTATGGCAAG AGTGATGAAA ACAAAATTAG ATGTGTGAGA GTTGAATTCC 56043 .......... .......... .......... .......... .......... .......... 605 TCTATGAGCT CAATCATCGA GGCTTATTGA TATTCTGACT TGCCTTTATG AAGTACTTTC 55983 .......... .......... .......... .......... .......... .......... 605 GATTTTAAAT ATAGGAATTC TTTTGAAGTT TGTTGTCTCA ATTTAGTTTT TACCATTTGT 55923 .......... .......... .......... .......... .......... .......... 605 TTGGTTGCAT ATGTTTGTCA CTGTGGCTAA ATTGGAATGT TCTAGTTGAG TTGTTTTGGA 55863 .......... .......... .......... .......... .......... .......... 605 ATTTTGAAGT GTTGTGTATC TTTTGTGTTA TGGAAACACA TATACTTGGA ATGTCTCTTG 55803 .......... .......... .......... .......... .......... .......... 605 TTGATGCAGT GTATAGATTA TATTGCAAAC AGGTTCTTTT TAAAGTATAT TTGTTTTTGT 55743 .......... .......... .......... .......... .......... .......... 605 ATGGCAAGAA TGATTGGAAA CAATTAGATG TGCGAGGGGT GAATTCCTCT ATGAGCTTAA 55683 .......... .......... .......... .......... .......... .......... 605 ACATCGAGGC ATATTGATAT TCTGACTTGC CTTTAAGAAC TACTTTCTTT TCGATTTAGG 55623 .......... .......... .......... .......... .......... .......... 605 AAAAAGAGAA GTCCTTTGAA TTTTTGTTTT TAGGACTTGG ATAAGAATTT AAGTTAGTTT 55563 .......... .......... .......... .......... .......... .......... 605 GAAATTAGAA AGGTGCCACC TTATATGACC ATTGTGCCAA TTTTTGGAGT TTTGGGGCTA 55503 .......... .......... .......... .......... .......... .......... 605 TGCTCCTTGT TTCTATCTTA ATGATATGAG ATTGTAAAGT TTATTGGTTT CTGTGGAGCT 55443 .......... .......... .......... .......... .......... .......... 605 TTTTTTGTGG TGGTATGTGC ATTATCTTTC TAGTTCTGTT ATTAATATTG TTGTGTAATG 55383 .......... .......... .......... .......... .......... .......... 605 TCAAGAAAGA TGAAAAACAA TTAGATGTGC GA 55351 | || || || || || || || || .....AGAGT TGCAAGTCAT TTTGACTTGT GA 632 hqPGS_C09HBa0168F14.1-2-_SGN-E371544- (60182 60063,59963 59918,59472 59387,58376 58247,58119 57943) ******************************************************************************** EST sequence 23 -strand 687 n (File: SGN-E371866-) 1 TTTTTCAAGC TTCAGCAGCA GCAGCAGCAG CACACCTGCA AATCAACCTT AGCCATGTCG 61 AGGAGAAAGA CCAGAGAGCC CAAGGAAGAG ACTGTTACCC TTGGACCAGC TACCAGGGAA 121 GGTGAATTGG TCTTTGGTGT TGCTCACATT TTCGCCTCTT TCAATGACAC ATTCATTCAT 181 GTGACTGATT TGTCTGGACG CGAAACAATG GTTCGCATTA CTGGTGGCAT GAAGGTGAAG 241 GCTGACAGAG ATGAATCTTC TCCTTATGCT GCTATGCTTG CAGCACAAGA TGTTTCTCAA 301 CGATGCAAGG AGCTTGGAAT TAATGCCCTT CACATTAAGC TTCGGGCTAC AGGTGGGAAC 361 AAAACCAAGA CTCCTGGTCC TGGTGCCCAG TCTGCTCTTA GAGCCCTTGC TCGATCCGGA 421 ATGAAAATTG GACGCATAGA GGATGTTACT CCTATTCCCA CCGACAGTAC TCGCAGAAAG 481 GGTGGTAGAA GAGGAAGGAG GCTGTGAATT CTTTTCAGCA ACATACATGC TACATGGCGG 541 AATATTTTGG TTAAGAATGC AACTCTGTTT GTGTTTTACA ACTTAGTTTT GAACATTTTG 601 TAGCCAGAGT TGCAAGTCAT TTTGACTTGT GATCATTTGG AGCTTTTTCA ATCTTGTGAG 661 ATGGAAATTA TTTTGTTAAA AAAAAAA Predicted gene structure (within gDNA segment 61353 to 55661): Exon 1 60182 60063 ( 120 n); cDNA 58 177 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 178 223 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 224 309 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 310 439 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 57946 ( 174 n); cDNA 440 602 ( 163 n); score: 0.750 PPA cDNA 678 687 MATCH C09HBa0168F14.1-2- SGN-E371866- 0.846 556 0.809 C PGS_C09HBa0168F14.1-2-_SGN-E371866- (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 117 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 177 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 177 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 198 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 223 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 223 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 223 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 223 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 223 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 223 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 223 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 233 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 293 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 309 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 309 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 309 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 309 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 309 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 309 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 309 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 309 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 309 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 309 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 309 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 309 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 309 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 309 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 309 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 309 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 309 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 363 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 423 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 439 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 439 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 476 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCAT-GTT 58024 |||||||||| ||||| |||| |||||||||| | | | ||||||| | || ||| | AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG -A-A-----T -TCTTTTCAG CAACATACAT 528 GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTG 57964 || | ||| || |||||| ||| || |||||| || | | | | |||||| | GCTACATGGC GG--AATATT -TTGGTTAAG AATGCAACTC TGTTTGTGT- TTTACAACTT 584 ATTTCTGAAC ACTCTGTA 57946 | || ||||| | | |||| AGTTTTGAAC ATTTTGTA 602 hqPGS_C09HBa0168F14.1-2-_SGN-E371866- (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) ******************************************************************************** EST sequence 55 -strand 755 n (File: SGN-E542110-) 1 GTTTTTCAGT TTCAGCAGCA GCAGCAGCAG CACACNTGCA AATCAACCTT AGCCATGTCG 61 AGGAGAAAGA CCAGAGAGCC CAAGGAGGAG ACTGTTACCC TTGGACCAGC TACCAGGGAA 121 GGTGAATTGG TCTTTGGTGT TGCTCACATT TTCGCTTCTT TCAATGACAC ATTCATTCAT 181 GTGACTGATT TGTCTGGACG CGAAACAATG GTTCGCATTA CTGGTGGCAT GAAGGTGAAG 241 GCTGACAGAG ATGAATCTTC TCCTTATGCT GCTATGCTTG CAGCACAAGA TGTTTCTCAA 301 CGATGCAAGG AGCTTGGAAT TAATGCCCTT CACATTAAGC TTCGGGCTAC AGGTGGGAAC 361 AAAACCAAGA CTCCTGGTCC TGGTGCCCAG TCTGCTCTTA GAGCCCTTGC TCGATCCGGA 421 ATGAAAATTG GACGCATAGA GGATGTTACT CCTATTCCCA CCGACAGTAC TCGCAGAAAG 481 GGTGGTAGAA GAGGAAGGAG GCTGTGAATT CTTCTCAGCA ACATACATGC TACATGGCGG 541 AATATTTTGG TTAAGAATGC AACTCTGTTT GTGTTTTACA ACTTAGTTTT GAACATTTTG 601 TAGCCAGAGT TGCAAGTCAT TCTGACTTGT GATCATTTGG AGCTTTTTCA ATCTTGTGAG 661 ATGGAAATTA TTTTGTTGAG TTGGATTAGC AAGTTGACTT CGTCATTATC TTCATTAAAA 721 AGTGAACACT TTTTGTTGCT TAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 62357 to 54981): Exon 1 60182 60063 ( 120 n); cDNA 58 177 ( 120 n); score: 0.892 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 178 223 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 224 309 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 310 439 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 57946 ( 174 n); cDNA 440 602 ( 163 n); score: 0.747 PPA cDNA 742 755 MATCH C09HBa0168F14.1-2- SGN-E542110- 0.843 556 0.736 C PGS_C09HBa0168F14.1-2-_SGN-E542110- (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| ||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAG GAGACTGTTA CCCTTGGACC AGCTACCAGG 117 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCTT CTTTCAATGA CACATTCATT 177 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 177 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 198 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 223 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 223 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 223 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 223 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 223 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 223 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 223 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 233 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 293 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 309 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 309 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 309 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 309 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 309 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 309 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 309 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 309 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 309 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 309 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 309 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 309 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 309 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 309 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 309 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 309 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 309 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 363 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 423 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 439 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 439 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 476 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| ||||| |||| |||||||||| | | || || ||| | || | || AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG -A-ATTC-TT CTC--AGCAA CA-TA-CATG 529 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 | | ||| | | |||||| ||| || | ||||| || | | | | | ||||| | | CTACATGGCG G--AATATT- TTGGTTAAGA ATGCAACTCT GTTTGTGT-T TTACAACTTA 585 TTTCTGAACA CTCTGTA 57946 || |||||| | |||| GTTTTGAACA TTTTGTA 602 hqPGS_C09HBa0168F14.1-2-_SGN-E542110- (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) ******************************************************************************** EST sequence 140 +strand 686 n (File: SGN-E371790+) 1 TTTTCAAGCT TCAGCAGCAG CAGCAGCAGC ACACCTGCAA ATCAACCTTA GCCATGTCGA 61 GGAGAAAGAC CAGAGAGCCC AAGGAAGAGA CTGTTACCCT TGGACCAGCT ACCAGGGAAG 121 GTGAATTGGT CTTTGGTGTT GCTCACATTT TCGCCTCTTT CAATGACACA TTCATTCATG 181 TGACTGATTT GTCTGGACGC GAAACAATGG TTCGCATTAC TGGTGGCATG AAGGTGAAGG 241 CTGACAGAGA TGAATCTTCT CCTTATGCTG CTATGCTTGC AGCACAAGAT GTTTCTCAAC 301 GATGCAAGGA GCTTGGAATT AATGCCCTTC ACATTAAGCT TCGGGCTACA GGTGGGAACA 361 AAACCAAGAC TCCTGGTCCT GGTGCCCAGT CTGCTCTTAG AGCCCTTGCT CGATCCGGAA 421 TGAAAATTGG ACGCATAGAG GATGTTACTC CTATTCCCAC CGACAGTACT CGCAGAAAGG 481 GTGGTAGAAG AGGAAGGAGG CTGTGAATTC TTCTCAGCAA CATACATGCT ACATGGCGGA 541 ATATTTTGGT TAAGAATGCA ACTCTGTTTG TGTTTTACAA CTTAGTTTTG AACATTNTGT 601 AGCCAGAGTT GCAAGTCATT CTGACTTGTG ATCATTTGGA GCTTTTTCAA TCTTGTGAGA 661 TGGAAATTAT TTTGTTGAAA AAAAAA Predicted gene structure (within gDNA segment 61333 to 55651): Exon 1 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 57946 ( 174 n); cDNA 439 601 ( 163 n); score: 0.747 MATCH C09HBa0168F14.1-2- SGN-E371790+ 0.845 556 0.810 C PGS_C09HBa0168F14.1-2-_SGN-E371790+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 116 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 176 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 176 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 197 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 222 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 222 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 222 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 222 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 222 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 222 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 222 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 232 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 292 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 308 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 308 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 308 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 308 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 308 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 308 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 308 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 308 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 308 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 308 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 308 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 308 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 308 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 308 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 308 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 308 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 308 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 362 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 422 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 438 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 438 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 475 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| ||||| |||| |||||||||| | | || || ||| | || | || AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG -A-ATTC-TT CTC--AGCAA CA-TA-CATG 528 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 | | ||| | | |||||| ||| || | ||||| || | | | | | ||||| | | CTACATGGCG G--AATATT- TTGGTTAAGA ATGCAACTCT GTTTGTGT-T TTACAACTTA 584 TTTCTGAACA CTCTGTA 57946 || |||||| | |||| GTTTTGAACA TTNTGTA 601 hqPGS_C09HBa0168F14.1-2-_SGN-E371790+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) ******************************************************************************** EST sequence 157 +strand 721 n (File: SGN-E339478+) 1 AAGCTTCAGC AGCAGCAGCA GCAGCACACC TGCAAATCAA CCTTAGCCAT GTCGAGGAGA 61 AAGACCAGAG AGCCCAAGGA AGAGACTGTT ACCCTTGGAC CAGCTACCAG GGAAGGTGAA 121 TTGGTCTTTG GTGTTGCTCA CATTTTCGCC TCTTTCAATG ACACATTCAT TCATGTGACT 181 GATTTGTCTG GACGCGAAAC AATGGTTCGC ATTACTGGTG GCATGAAGGT GAAGGCTGAC 241 AGAGATGAAT CTTCTCCTTA TGCTGCTATG CTTGCAGCAC AAGATGTTTC TCAACGATGC 301 AAGGAGCTTG GAATTAATGC CCTTCACATT AAGCTTCGGG CTACAGGTGG GAACAAAACC 361 AAGACTCCTG GTCCTGGTGC CCAGTCTGCT CTTAGAGCCC TTGCTCGATC CGGAATGAAA 421 ATTGGACGCA TAGAGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG AAAGGGTGGT 481 AGAAGAGGAA GGAGGCTGTG AATTCTTCTC AGCAACATAC ATGCTACATG GCGGAATATT 541 TTGGTTAAGA ATGCAACTCT GTTTGTGTTT TACAACTTAG TTTTGAACAT TTTGTAGCCA 601 GAGTTGCAAG TCATTCTGAC TTGTGATCAT TTGGAGCTTT TTCAATCTTG TGAGATGGAA 661 ATTATTTTGT TGAGTTGGAT TAGCAAGTTG ACTTCGTCAT TATCTTCATT AAAAAGTGAA 721 C Predicted gene structure (within gDNA segment 61283 to 55251): Exon 1 60182 60063 ( 120 n); cDNA 52 171 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 172 217 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 218 303 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 304 433 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 57946 ( 174 n); cDNA 434 596 ( 163 n); score: 0.747 MATCH C09HBa0168F14.1-2- SGN-E339478+ 0.845 556 0.771 C PGS_C09HBa0168F14.1-2-_SGN-E339478+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 111 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 171 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 171 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 192 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 217 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 217 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 217 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 217 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 217 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 217 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 217 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 227 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 287 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 303 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 303 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 303 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 303 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 303 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 303 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 303 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 303 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 303 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 303 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 303 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 303 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 303 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 303 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 303 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 303 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 303 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 357 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 417 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 433 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 433 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 470 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| ||||| |||| |||||||||| | | || || ||| | || | || AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG -A-ATTC-TT CTC--AGCAA CA-TA-CATG 523 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 | | ||| | | |||||| ||| || | ||||| || | | | | | ||||| | | CTACATGGCG G--AATATT- TTGGTTAAGA ATGCAACTCT GTTTGTGT-T TTACAACTTA 579 TTTCTGAACA CTCTGTA 57946 || |||||| | |||| GTTTTGAACA TTTTGTA 596 hqPGS_C09HBa0168F14.1-2-_SGN-E339478+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) ******************************************************************************** EST sequence 72 -strand 620 n (File: SGN-E266233-) 1 CATTTTCGCC TCTTTCAATG ACACATTCAT TCATGTGACT GATTTGTCTG GACGCGAAAC 61 AATGGTTCGC ATTACTGGTG GCATGAAGGT GAAGGCTGAC AGAGATGAAT CTTCTCCTTA 121 TGCTGCTATG CTTGCAGCAC AAGATGTTTC TCAACGATGC AAGGAGCTTG GAATTAATGC 181 CCTTCACATT AAGCTTCGGG CTACAGGTGG GAACAAAACC AAGACTCCTG GTCCTGGTGC 241 CCAGTCTGCT CTTAGAGCCC TTGCTCGATC CGGAATGAAA ATTGGACGCA TAGAGGATGT 301 TACTCCTATT CCCACCGACA GTACTCGCAG AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG 361 AATTCTTCTC AGCAACATAC ATGCTACATG GCGGAATATT TTGGTTAAGA ATGCAACTCT 421 GTTTGTGTTT TACAACTTAG TTTTGAACAT TTTGTAGCCA GAGTTGCAAG TCATTCTGAC 481 TTGTGATCAT TTGGAGCTTT TTCAATCTTG TGAGATGGAA ATTATTTTGT TGAGTTGGAT 541 TAGCAAGTTG ACTTCGTCAT TATCTTCATT AAAAAGTGAA CACTTTTTGT TGCTTAAAAA 601 AAAAAAAAAA AAAAAACTCG Predicted gene structure (within gDNA segment 60897 to 53671): Exon 1 60093 60063 ( 31 n); cDNA 1 31 ( 31 n); score: 0.871 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 32 77 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 78 163 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 164 293 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 57946 ( 174 n); cDNA 294 456 ( 163 n); score: 0.747 Intron 5 57945 56378 (1568 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0) Exon 6 56377 56342 ( 36 n); cDNA 457 491 ( 35 n); score: 0.583 Intron 6 56341 55450 ( 892 n); Pd: 0.479 (s: 0), Pa: 0.000 (s: 0) Exon 7 55449 55431 ( 19 n); cDNA 492 510 ( 19 n); score: 0.737 Intron 7 55430 55378 ( 53 n); Pd: 0.852 (s: 0), Pa: 0.912 (s: 0) Exon 8 55377 55359 ( 19 n); cDNA 511 529 ( 19 n); score: 0.632 Intron 8 55358 54791 ( 568 n); Pd: 0.000 (s: 0), Pa: 0.379 (s: 0) Exon 9 54790 54781 ( 10 n); cDNA 530 539 ( 10 n); score: 0.900 PPA cDNA 596 617 MATCH C09HBa0168F14.1-2- SGN-E266233- 0.828 551 0.889 C PGS_C09HBa0168F14.1-2-_SGN-E266233- (60093 60063,59963 59918,59472 59387,58376 58247,58119 57946,56377 56342,55449 55431,55377 55359,54790 54781) Alignment (genomic DNA sequence = upper lines): CATTTTTGCA TCGTTCAATG ATACATTCAT TGTGAGTGAG TTATGGTTTT TGAAAATTTG 60034 |||||| || || ||||||| | |||||||| | CATTTTCGCC TCTTTCAATG ACACATTCAT T......... .......... .......... 31 ATGTAGAAAT GTAGATTTGG CTTTGTTATT TGTGTGTTTT ACTGATTCTT AGTGTATGTG 59974 .......... .......... .......... .......... .......... .......... 31 ATGAATGCAG CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTAT 59914 || || |||| |||||||||| | | ||||| |||||||||| |||||| .......... CATGTGACTG ATTTGTCTGG ACGCGAAACA ATGGTTCGCA TTACTG.... 77 GCCTTATAGA AACAATTGTT TTATACTTTT GACTGTATCC TTGTAGTTAC TGATTAGCTG 59854 .......... .......... .......... .......... .......... .......... 77 GTAGCAGTAT AATTGTTGCT TTCGATGCGA ACATCGGTTT ATGTATAAAT GTAGATGCCT 59794 .......... .......... .......... .......... .......... .......... 77 TTCTTCCAGG ATGCTAATTC TGTTGTTGTT ATCCCTATTG GATAGACATA TATTTACTTT 59734 .......... .......... .......... .......... .......... .......... 77 TTCAATATAG ATGAATGTAA GTGGTAGGAA ATGTAGAGCA TCTATAGTTT TAGGGAAATC 59674 .......... .......... .......... .......... .......... .......... 77 AAGAATGTAG AGCATCTATA GTTTTAGGGA ATCCTTGATA TGGTTGAGGC AGCAAATTAT 59614 .......... .......... .......... .......... .......... .......... 77 TGGTATTAGA ATATAATCCT TCTAGGAAGA AGGAAAATGG GTATAGAGGT TCCGTCTAGT 59554 .......... .......... .......... .......... .......... .......... 77 GTGGAGTTTA ATCTTAGTTG TTGATGTCGT AATGGTATGG AGAAGCCTTT CATCTCAAAT 59494 .......... .......... .......... .......... .......... .......... 77 TGTTATACAT TTTTGTTGCA GGTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC 59434 |||| |||| |||||||||| |||||||||| || ||||||| .......... .......... .GTGGCATGA AGGTGAAGGC TGACAGAGAT GAATCTTCTC 116 CGTATGCTGC TATGCTTGCA GCTCAGGATG TGTCACAGCG ATGCAAGGTA GTGTCTTGTT 59374 | |||||||| |||||||||| || || |||| | || || || ||||||| CTTATGCTGC TATGCTTGCA GCACAAGATG TTTCTCAACG ATGCAAG... .......... 163 TGGTTCTGAT AAAGTCAATT TCCTTAATTC TACTTAATTG TTAGTTAAGC TCATCAGATA 59314 .......... .......... .......... .......... .......... .......... 163 TAAAGTTGGT CTAGTTCAGG TCTATATCAA TATAAACCAT TTATGTATGA ACGAAAAAAA 59254 .......... .......... .......... .......... .......... .......... 163 TGAAGACTTT TTGCCTATAT GGTACTGTTC ACAGAGATTA ATATTAGATT TTATTTCTGA 59194 .......... .......... .......... .......... .......... .......... 163 AGAAAGTCAC TATACTAATT TCACTGGATA TTGATGTAAT GTTTAGTTCT CCTGGATGTT 59134 .......... .......... .......... .......... .......... .......... 163 GCATTCCATG TTGGTGCAGG GATTTATCCT TTCTTGCATT GACCAGTAAT ATAGGTGCCA 59074 .......... .......... .......... .......... .......... .......... 163 AATTACATAG CTCTTCTATA AGTGTAGAGT GTTGCTTTGT AGATAAAATT TAGCAGTTTC 59014 .......... .......... .......... .......... .......... .......... 163 GAAATTTAAG ACCTTTTGGA TCTTCTGATG CCTCCCTTTT CTGAATGTGT GCTAAAGCCA 58954 .......... .......... .......... .......... .......... .......... 163 ATAATTCTGC CGACTAGACA TTCGAAGATC TTATAATGTA CATGATGGCC TTTACTCCTA 58894 .......... .......... .......... .......... .......... .......... 163 TCTATGTTTC TTGCTAGGAT GTAGATGGTC TATAAGATTG TTTTTGGGTT CCATATGCCT 58834 .......... .......... .......... .......... .......... .......... 163 GATGCATCTT ACTTTTGCTT AACAATAAAA AATTTGTGTA TAATTGATTG GAATAAATGC 58774 .......... .......... .......... .......... .......... .......... 163 CATTCCTTCG AACATATTGT AGAGACCCGT AGATTTTATG TCACCGGTTT GGATCTATTA 58714 .......... .......... .......... .......... .......... .......... 163 GGCTTTGTTA TGGAAGATTC CATTCTGAAG TGATGTGTGC ACCTTCAATT TTCGGACACT 58654 .......... .......... .......... .......... .......... .......... 163 TTTACCACTA ACAGTTGCAT AATCGCTGGT GGTGCTTGAA CTATGGAAAA ATGTGTGCTT 58594 .......... .......... .......... .......... .......... .......... 163 CAGATTCTAT TTAAGCGTCA AGGTTTCGGA ATGGTGGTCA GAATCATTGT TAATGGGTTC 58534 .......... .......... .......... .......... .......... .......... 163 CATGCTATGC CATTTATTCA GAGTCTAAAT ATAGCTACAC TATATTTAAG ACTCAAGCTC 58474 .......... .......... .......... .......... .......... .......... 163 GGATACGTCC ATCTTTATCC ATCTAGTCTG ATGTCACTAG GTCTCGTCAT CACTTGTTAA 58414 .......... .......... .......... .......... .......... .......... 163 TCTTTTAAAA TATTATTTAT GAACTTTTGA TTTACAGGAA CTTGGAATTA ATGCTCTTCA 58354 || |||||||||| |||| ||||| .......... .......... .......... .......GAG CTTGGAATTA ATGCCCTTCA 186 CATTAAGCTC CGAGCTACAG GAGGCAACAA GACCAAGACT CCTGGTCCTG GTGCCCAGTC 58294 ||||||||| || ||||||| | || ||||| ||||||||| |||||||||| |||||||||| CATTAAGCTT CGGGCTACAG GTGGGAACAA AACCAAGACT CCTGGTCCTG GTGCCCAGTC 246 CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT GAAAATTGGA CGTATAGGTA CATAAGCTTT 58234 ||||||||| || | |||| | || || || |||||||||| || |||| TGCTCTTAGA GCCCTTGCTC GATCCGGAAT GAAAATTGGA CGCATAG... .......... 293 TCTCTCTTGC ATCAGTATCG TATCATGGCA AAGTTCTCGT AATATGCTCC ATATAATCTG 58174 .......... .......... .......... .......... .......... .......... 293 TTGTATCATT GTTATGTCAT CACTTTTAAG TAATTCTTCC TATATATTTT GCAGAGGATG 58114 |||||| .......... .......... .......... .......... .......... ....AGGATG 299 TTACTCCAAT TCCCACCGAT AGTACTCGCA GAAAGGGTGG TAGAAGGGGA AGGAGGCTGT 58054 ||||||| || ||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TTACTCCTAT TCCCACCGAC AGTACTCGCA GAAAGGGTGG TAGAAGAGGA AGGAGGCTGT 359 GAAGACTCTT TCTCTTTTCT GCAGCATGTT GCAAATTGGA GGAAAATATT GTTGTCGAAA 57994 | | | || | |||| | || | | || | ||| || |||||| ||| || G-A-ATTC-T TCTC--AGCA ACA-TA-CAT GCTACATGGC GG--AATATT -TTGGTTAAG 409 AATGCAGCTT TCGATATCTA TTTACATTTG ATTTCTGAAC ACTCTGTAGT TGAGCACTTT 57934 |||||| || | | | | |||||| | | || ||||| | | |||| AATGCAACTC TGTTTGTGT- TTTACAACTT AGTTTTGAAC ATTTTGTA.. .......... 456 TGGTTTCGAA ACCACCTTCA TTTTGAGTTT GCCAGCTTTT CGAGATAGTT AAGTTCTCTT 57874 .......... .......... .......... .......... .......... .......... 456 AAATTTGGTT TATGCAGGCT AATTGTTGGA TAAATTTATA CTCTTTTTAT CTTCACAATT 57814 .......... .......... .......... .......... .......... .......... 456 CTGTTAGTTA TAAAGCTTTA TTTCATTATG GATATATACT TGATAAAACG AATTGCATAA 57754 .......... .......... .......... .......... .......... .......... 456 ACAACTGTTT TCAGGACGTT GTATAGTCGA AATTTATAAA GATGAAATTG AGATTTTGAA 57694 .......... .......... .......... .......... .......... .......... 456 ATTATACAAT TTTAGTATAA ATATTTGAAT AAAATCATTC AAAGATTAAC TATTATTTCA 57634 .......... .......... .......... .......... .......... .......... 456 AAGTAAAACA TGGAATAAAG TTTAACCCCC AAATAGTATT TTGAAACAAG CTATGTTTGA 57574 .......... .......... .......... .......... .......... .......... 456 AATAAAAAGA TACCTTTCAA TAACAAATTG GAAAATTAGG AAGTCTTATA TTAAAGACTA 57514 .......... .......... .......... .......... .......... .......... 456 GTAAAAACAA CTTTTACATG CATTATTTAC TTGAAGAGGA AAGACTCAAA TATGTCATCG 57454 .......... .......... .......... .......... .......... .......... 456 TATTAAAAAT TTGACTCATC ATTCATATCA TTATTTGTTA ATTGAAATGA TATATATGAA 57394 .......... .......... .......... .......... .......... .......... 456 TCAATTTTTT TTTAAAATGA CATAAATGAA TCTTTTTTTT TTTATAAGTT TGATGACATG 57334 .......... .......... .......... .......... .......... .......... 456 CTTGAGTTTT TGTCCTTTTT AAAACGTGAT TTAATTAATG TCATCCATAT CACATGTAAA 57274 .......... .......... .......... .......... .......... .......... 456 AGATAATTTT GCAAAATCAA AACTGTTTTT AGGTAACAAA TAATGACATG GATAAATTTT 57214 .......... .......... .......... .......... .......... .......... 456 TTTTATAAAA AGAAAAATGA CATAAATAAA CTAAACTTTT AACGATTGAT GTACATGAAT 57154 .......... .......... .......... .......... .......... .......... 456 CTTTTTCTCA AAGTTCGATG ACACATTTGA AGTTTTCTCT TTATTAAAAG ATTTCTTTGT 57094 .......... .......... .......... .......... .......... .......... 456 TTTTTTTTTG CAAGAAATGG ATCTTCAATT TGGGCCTATA CAGATCTCTT CGGCCCAACC 57034 .......... .......... .......... .......... .......... .......... 456 AGCAATATGT AGGTCCATTC ACTCTTTAGC CCATTAATCC TATGCTAAAA CCCTAATTGT 56974 .......... .......... .......... .......... .......... .......... 456 TGAGTCTATA AATCTCTATT TTTCACTTCA ATAATTTGGG GATCAATCCC CAATGTAGCC 56914 .......... .......... .......... .......... .......... .......... 456 GAATCTTTGT GAGTTTCTTC TTCATTGCTT ATCGTATTGA ATTTCTTCGT GTATGGTGTT 56854 .......... .......... .......... .......... .......... .......... 456 TTTCCTCTTT TTGATTTCAT GTTTTAATGG GTTAATAACT GAAACCTCTT ATGCAATTTA 56794 .......... .......... .......... .......... .......... .......... 456 GTTTGCTAAC AGTGGAAGTT ATAATACCCT ATAATTATTT GCCATTTTCA ACTTAGTCAG 56734 .......... .......... .......... .......... .......... .......... 456 CTGTGTTTCT CTGTTGCAGT TGATTATCGT GACTGGTAAA CTCAAAATTA TGTTATAAAC 56674 .......... .......... .......... .......... .......... .......... 456 CGAAAATTTT TACATGAATT TTAGGGGTTT TGCTTTTATG TTGCTTTGGT TGTCCAAAAT 56614 .......... .......... .......... .......... .......... .......... 456 GCAGTTGGGT GTGTAGTGGT TTTTCTTAAA AATTGTTTTT TTTGTATGTG AAGTGTGTAT 56554 .......... .......... .......... .......... .......... .......... 456 GATGCGTGGA TTGATCAAAA TGCTATTGGG TATGCATTAA TTTCTCTTAA AGATGTGATT 56494 .......... .......... .......... .......... .......... .......... 456 TTTGGAATAT GTTGCAACAT TTTGATCGAT TGGAGCTATA TAACAAAGTG TGTTGTGTAT 56434 .......... .......... .......... .......... .......... .......... 456 GGATTAATTT GTTTCATTTT GCGCCGCCCT TAAGATCGCC TTCCATTATG CTCCATGGAA 56374 | | .......... .......... .......... .......... .......... ......GCCA 460 GCGTTTTGAG TCATAGCTGC GCTATATTAA TTGTATATAT GCACACTCTT TTGTATGTAC 56314 | ||| || |||| ||| | | | | || GAGTTGCAAG TCAT-TCTGA CTTGTGATCA TT........ .......... .......... 491 AATTGTATAT ATGAAAGGTG TGTTATATGC TGGAGTTTTC TCTTTAGGGT TTTCCTTTAG 56254 .......... .......... .......... .......... .......... .......... 491 TGAGTCTCCT TTTGCCTCGC CTTATTTCAG GAGTCATATC CTTTTTTTTT GGTTTTGTCT 56194 .......... .......... .......... .......... .......... .......... 491 TTCCCAATTG GGGATATAGA ACCAAAAGAT GTTTTGAATG GCTCTAGTTG AGGTGGGGTG 56134 .......... .......... .......... .......... .......... .......... 491 TACATTATTT TGTGATTTTT GTTTATTATA TTTCCTTGTT CTTATGGCAA GAGTGATGAA 56074 .......... .......... .......... .......... .......... .......... 491 AACAAAATTA GATGTGTGAG AGTTGAATTC CTCTATGAGC TCAATCATCG AGGCTTATTG 56014 .......... .......... .......... .......... .......... .......... 491 ATATTCTGAC TTGCCTTTAT GAAGTACTTT CGATTTTAAA TATAGGAATT CTTTTGAAGT 55954 .......... .......... .......... .......... .......... .......... 491 TTGTTGTCTC AATTTAGTTT TTACCATTTG TTTGGTTGCA TATGTTTGTC ACTGTGGCTA 55894 .......... .......... .......... .......... .......... .......... 491 AATTGGAATG TTCTAGTTGA GTTGTTTTGG AATTTTGAAG TGTTGTGTAT CTTTTGTGTT 55834 .......... .......... .......... .......... .......... .......... 491 ATGGAAACAC ATATACTTGG AATGTCTCTT GTTGATGCAG TGTATAGATT ATATTGCAAA 55774 .......... .......... .......... .......... .......... .......... 491 CAGGTTCTTT TTAAAGTATA TTTGTTTTTG TATGGCAAGA ATGATTGGAA ACAATTAGAT 55714 .......... .......... .......... .......... .......... .......... 491 GTGCGAGGGG TGAATTCCTC TATGAGCTTA AACATCGAGG CATATTGATA TTCTGACTTG 55654 .......... .......... .......... .......... .......... .......... 491 CCTTTAAGAA CTACTTTCTT TTCGATTTAG GAAAAAGAGA AGTCCTTTGA ATTTTTGTTT 55594 .......... .......... .......... .......... .......... .......... 491 TTAGGACTTG GATAAGAATT TAAGTTAGTT TGAAATTAGA AAGGTGCCAC CTTATATGAC 55534 .......... .......... .......... .......... .......... .......... 491 CATTGTGCCA ATTTTTGGAG TTTTGGGGCT ATGCTCCTTG TTTCTATCTT AATGATATGA 55474 .......... .......... .......... .......... .......... .......... 491 GATTGTAAAG TTTATTGGTT TCTGTGGAGC TTTTTTTGTG GTGGTATGTG CATTATCTTT 55414 |||||| ||||| | || .......... .......... ....TGGAGC TTTTTCAATC TTG....... .......... 510 CTAGTTCTGT TATTAATATT GTTGTGTAAT GTCAAGAAAG ATGAAAAACA ATTAGATGTG 55354 || ||| ||| | || | .......... .......... .......... ......TGAG ATGGAAATTA TTTTG..... 529 CGAGTGGTGA ATTCCTCTGT GAGCTCAACC ATCGAGGCTT ATTGATATTC TGACTTGTCT 55294 .......... .......... .......... .......... .......... .......... 529 TATGTAGTAC TTTCTATTTG TTCTAAGACA AAATTTCAGC TTTGAAAATT AAGCATTTGT 55234 .......... .......... .......... .......... .......... .......... 529 GTGTTTGAAT AATTTGTCAC TGTTGAAAAT GAAAGTTGCT ATCTTTTTGT TCCAACAAAA 55174 .......... .......... .......... .......... .......... .......... 529 GATGCTTTGA ATCTCCCTAA TTTAGATGTG GTTTGCAGTA TATTTCTATT TATATTCATA 55114 .......... .......... .......... .......... .......... .......... 529 ACATAACTTT GCTATGGCAA GAATGATGAT AAACTATTAG ATGTGTGAGT GGTGTATTCC 55054 .......... .......... .......... .......... .......... .......... 529 TCTATGAGCT CAATCATCGA GGCTTATTGA TATTCTGACT TGCCTTCTTA AAGTACTTAC 54994 .......... .......... .......... .......... .......... .......... 529 AATAGAAATA AATGGAACTT TTTAATTTTG TGTTCTACAA ATATGCTTCA TTATTGCATT 54934 .......... .......... .......... .......... .......... .......... 529 TGTACTAATT TTTCACTTGA AGTTGTAGCA AATTGTTAAG TTGAAATATT TATCTGATTT 54874 .......... .......... .......... .......... .......... .......... 529 AGACCTTAAC TGAAGTTACA CGTCAGGATA TAGCCCATAC TTTTTGTGGT GTCACATCCG 54814 .......... .......... .......... .......... .......... .......... 529 TTGTTGATTC TACTTTTTTC TAGTTGAGGT GGA 54781 ||||| | ||| .......... .......... ...TTGAGTT GGA 539 hqPGS_C09HBa0168F14.1-2-_SGN-E266233- (60093 60063,59963 59918,59472 59387,58376 58247,58119 57946) ******************************************************************************** EST sequence 117 +strand 613 n (File: SGN-E325907+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTGGCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA CGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAATTGGAGG AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT 601 TTCTGAACAC TCT Predicted gene structure (within gDNA segment 60970 to 57339): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 0.967 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.96), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57949 ( 171 n); cDNA 443 613 ( 171 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E325907+ 0.995 613 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E325907+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57949) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTGGCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| || | CAGGATGTGT CACAGCGATG CACG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 57971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 591 ACATTTGATT TCTGAACACT CT 57949 |||||||||| |||||||||| || ACATTTGATT TCTGAACACT CT 613 hqPGS_C09HBa0168F14.1-2-_SGN-E325907+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57949) ******************************************************************************** EST sequence 155 +strand 613 n (File: SGN-E303491+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAGGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAATTGGAGG AAAATATTGT TGTCGAAAAA TGCAGCTTTC GATATCTATT TACATTTGAT 601 TTCTGAACAC TCT Predicted gene structure (within gDNA segment 60970 to 57339): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57949 ( 171 n); cDNA 443 613 ( 171 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E303491+ 1.000 613 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E303491+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57949) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 57971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATGTTGCA AATTGGAGGA AAATATTGTT GTCGAAAAAT GCAGCTTTCG ATATCTATTT 591 ACATTTGATT TCTGAACACT CT 57949 |||||||||| |||||||||| || ACATTTGATT TCTGAACACT CT 613 hqPGS_C09HBa0168F14.1-2-_SGN-E303491+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57949) ******************************************************************************** EST sequence 206 +strand 586 n (File: SGN-E290481+) 1 TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA GGAGAAAGAC CAGGGAGCCT 61 AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG GTGAATTGGT GTTCGGTGTT 121 GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG TTACTGATTT GTCTGGAAGA 181 GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG CTGACAGAGA TGAGTCTTCT 241 CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC GATGCAAGGA ACTTGGAATT 301 AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA AGACCAAGAC TCCTGGTCCT 361 GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA TGAAAATTGG ACGTATAGAG 421 GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG GTGGTAGAAG GGGAAGGAGG 481 CTGTGAAGAC TCTTTCTCTT TTCTGCAACA TGTTGCAAAT TGGAGGAAAA TATTGTTGTC 541 GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTCT GAACAC Predicted gene structure (within gDNA segment 60946 to 57342): Exon 1 60346 60311 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 37 156 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 157 202 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 203 288 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 289 418 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57952 ( 168 n); cDNA 419 586 ( 168 n); score: 0.994 MATCH C09HBa0168F14.1-2- SGN-E290481+ 0.998 586 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E290481+ (60346 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57952) Alignment (genomic DNA sequence = upper lines): TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC TATTTCTCGT GCTGAAATTT 60287 |||||||||| |||||||||| |||||||||| |||||| TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... .......... .......... 36 CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA TTTAGTTTGA TTTGATTAAT 60227 .......... .......... .......... .......... .......... .......... 36 TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT GTAGTCGAGG AGAAAGACCA 60167 |||||| |||||||||| .......... .......... .......... .......... ....TCGAGG AGAAAGACCA 52 GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC GAGGGAAGGT GAATTGGTGT 60107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC GAGGGAAGGT GAATTGGTGT 112 TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT CATTGTGAGT GAGTTATGGT 60047 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT CATT...... .......... 156 TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT ATTTGTGTGT TTTACTGATT 59987 .......... .......... .......... .......... .......... .......... 156 CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC TGGAAGAGAA ACTATGGTTC 59927 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...CACGTTA CTGATTTGTC TGGAAGAGAA ACTATGGTTC 193 GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT TTTGACTGTA TCCTTGTAGT 59867 ||||||||| GCATTACTG. .......... .......... .......... .......... .......... 202 TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG CGAACATCGG TTTATGTATA 59807 .......... .......... .......... .......... .......... .......... 202 AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT GTTATCCCTA TTGGATAGAC 59747 .......... .......... .......... .......... .......... .......... 202 ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG GAAATGTAGA GCATCTATAG 59687 .......... .......... .......... .......... .......... .......... 202 TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG GGAATCCTTG ATATGGTTGA 59627 .......... .......... .......... .......... .......... .......... 202 GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA AGAAGGAAAA TGGGTATAGA 59567 .......... .......... .......... .......... .......... .......... 202 GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT CGTAATGGTA TGGAGAAGCC 59507 .......... .......... .......... .......... .......... .......... 202 TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA TGAAGGTGAA GGCTGACAGA 59447 |||||| |||||||||| |||||||||| .......... .......... .......... ....GTGGAA TGAAGGTGAA GGCTGACAGA 228 GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG ATGTGTCACA GCGATGCAAG 59387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG ATGTGTCACA GCGATGCAAG 288 GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA TTCTACTTAA TTGTTAGTTA 59327 .......... .......... .......... .......... .......... .......... 288 AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT CAATATAAAC CATTTATGTA 59267 .......... .......... .......... .......... .......... .......... 288 TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG TTCACAGAGA TTAATATTAG 59207 .......... .......... .......... .......... .......... .......... 288 ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG ATATTGATGT AATGTTTAGT 59147 .......... .......... .......... .......... .......... .......... 288 TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT CCTTTCTTGC ATTGACCAGT 59087 .......... .......... .......... .......... .......... .......... 288 AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG AGTGTTGCTT TGTAGATAAA 59027 .......... .......... .......... .......... .......... .......... 288 ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG ATGCCTCCCT TTTCTGAATG 58967 .......... .......... .......... .......... .......... .......... 288 TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG ATCTTATAAT GTACATGATG 58907 .......... .......... .......... .......... .......... .......... 288 GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG GTCTATAAGA TTGTTTTTGG 58847 .......... .......... .......... .......... .......... .......... 288 GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA AAAAATTTGT GTATAATTGA 58787 .......... .......... .......... .......... .......... .......... 288 TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC CGTAGATTTT ATGTCACCGG 58727 .......... .......... .......... .......... .......... .......... 288 TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG AAGTGATGTG TGCACCTTCA 58667 .......... .......... .......... .......... .......... .......... 288 ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT GGTGGTGCTT GAACTATGGA 58607 .......... .......... .......... .......... .......... .......... 288 AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC GGAATGGTGG TCAGAATCAT 58547 .......... .......... .......... .......... .......... .......... 288 TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA AATATAGCTA CACTATATTT 58487 .......... .......... .......... .......... .......... .......... 288 AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT CTGATGTCAC TAGGTCTCGT 58427 .......... .......... .......... .......... .......... .......... 288 CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT TGATTTACAG GAACTTGGAA 58367 |||||||||| .......... .......... .......... .......... .......... GAACTTGGAA 298 TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA CAAGACCAAG ACTCCTGGTC 58307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA CAAGACCAAG ACTCCTGGTC 358 CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG CATGAAAATT GGACGTATAG 58247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG CATGAAAATT GGACGTATAG 418 GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG GCAAAGTTCT CGTAATATGC 58187 .......... .......... .......... .......... .......... .......... 418 TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT AAGTAATTCT TCCTATATAT 58127 .......... .......... .......... .......... .......... .......... 418 TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG TGGTAGAAGG 58067 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG TGGTAGAAGG 471 GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT GTTGCAAATT GGAGGAAAAT 58007 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAACAT GTTGCAAATT GGAGGAAAAT 531 ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT TTGATTTCTG AACAC 57952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT TTGATTTCTG AACAC 586 hqPGS_C09HBa0168F14.1-2-_SGN-E290481+ (60346 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57952) ******************************************************************************** EST sequence 134 +strand 599 n (File: SGN-E326125+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG 181 TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG 241 CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC 301 GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 361 AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA 421 TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGCAGAAAGG 481 GTGGTAGAAG GGGAAGGAGG CTGTGAAGAC TCTTTCTCTT TTCTGCAGCA TGTTGCAAAT 541 TGGAGGAAAA TATTGTTGTC GAAAAATGCA GCTTTCGATA TCTATTTACA TTTGATTTC Predicted gene structure (within gDNA segment 60966 to 57349): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57959 ( 161 n); cDNA 439 599 ( 161 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E326125+ 1.000 599 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E326125+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57959) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 172 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 176 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 193 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 222 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 222 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 222 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 222 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 222 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 222 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 222 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 228 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 288 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 308 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 308 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 308 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 308 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 308 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 308 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 308 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 308 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 308 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 308 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 308 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 308 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 308 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 308 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 308 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 308 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 308 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 358 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 418 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 438 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 438 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 471 GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 58027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT 531 GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 57967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCAAATT GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT 591 TTGATTTC 57959 |||||||| TTGATTTC 599 hqPGS_C09HBa0168F14.1-2-_SGN-E326125+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57959) ******************************************************************************** EST sequence 182 +strand 485 n (File: SGN-E289564+) 1 AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 61 ATTCATTCAC GTTACTGATT TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTGGAAT 121 GAAGGTGAAG GCTGACAGAG ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA 181 TGTGTCACAG CGATGCAAGG AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC 241 AGGAGGCAAC AAGACCAAGA CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC 301 TCGTTCTGGC ATGAAAATTG GACGTATAGA GGATGTTACT CCAATTCCCA CCGATAGTAC 361 TCGCAGAAAG GGTGGTAGAA GGGGAAGGAG GCTGTGAAGA CTCTTTCTCT TTTCTGCAGC 421 ATGTTGCAAA TTGGAGGAAA ATATTGTTGT CGAAAAATGC AGCTTTCGAT ATCTATTTAC 481 ATTTG Predicted gene structure (within gDNA segment 60729 to 57354): Exon 1 60129 60063 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 68 113 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 114 199 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 200 329 ( 130 n); score: 1.000 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 5 58119 57964 ( 156 n); cDNA 330 485 ( 156 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E289564+ 1.000 485 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E289564+ (60129 60063,59963 59918,59472 59387,58376 58247,58119 57964) Alignment (genomic DNA sequence = upper lines): AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 60070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 60 ATTCATTGTG AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT 60010 ||||||| ATTCATT... .......... .......... .......... .......... .......... 67 GTTATTTGTG TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT 59950 |||| |||||||||| .......... .......... .......... .......... ......CACG TTACTGATTT 81 GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT 59890 |||||||||| |||||||||| |||||||||| || GTCTGGAAGA GAAACTATGG TTCGCATTAC TG........ .......... .......... 113 ACTTTTGACT GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG 59830 .......... .......... .......... .......... .......... .......... 113 ATGCGAACAT CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT 59770 .......... .......... .......... .......... .......... .......... 113 GTTGTTATCC CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG 59710 .......... .......... .......... .......... .......... .......... 113 TAGGAAATGT AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT 59650 .......... .......... .......... .......... .......... .......... 113 TAGGGAATCC TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA 59590 .......... .......... .......... .......... .......... .......... 113 GGAAGAAGGA AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA 59530 .......... .......... .......... .......... .......... .......... 113 TGTCGTAATG GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG 59470 ||| .......... .......... .......... .......... .......... .......GTG 116 GAATGAAGGT GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC 59410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGAAGGT GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC 176 AGGATGTGTC ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT 59350 |||||||||| |||||||||| ||| AGGATGTGTC ACAGCGATGC AAG....... .......... .......... .......... 199 TAATTCTACT TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA 59290 .......... .......... .......... .......... .......... .......... 199 TATCAATATA AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA 59230 .......... .......... .......... .......... .......... .......... 199 CTGTTCACAG AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC 59170 .......... .......... .......... .......... .......... .......... 199 TGGATATTGA TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT 59110 .......... .......... .......... .......... .......... .......... 199 TATCCTTTCT TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG 59050 .......... .......... .......... .......... .......... .......... 199 TAGAGTGTTG CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT 58990 .......... .......... .......... .......... .......... .......... 199 CTGATGCCTC CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG 58930 .......... .......... .......... .......... .......... .......... 199 AAGATCTTAT AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG 58870 .......... .......... .......... .......... .......... .......... 199 ATGGTCTATA AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA 58810 .......... .......... .......... .......... .......... .......... 199 ATAAAAAATT TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG 58750 .......... .......... .......... .......... .......... .......... 199 ACCCGTAGAT TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT 58690 .......... .......... .......... .......... .......... .......... 199 CTGAAGTGAT GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC 58630 .......... .......... .......... .......... .......... .......... 199 GCTGGTGGTG CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT 58570 .......... .......... .......... .......... .......... .......... 199 TTCGGAATGG TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT 58510 .......... .......... .......... .......... .......... .......... 199 CTAAATATAG CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT 58450 .......... .......... .......... .......... .......... .......... 199 AGTCTGATGT CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC 58390 .......... .......... .......... .......... .......... .......... 199 TTTTGATTTA CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 58330 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 246 CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC 58270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC 306 TGGCATGAAA ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC 58210 |||||||||| |||||||||| ||| TGGCATGAAA ATTGGACGTA TAG....... .......... .......... .......... 329 ATGGCAAAGT TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT 58150 .......... .......... .......... .......... .......... .......... 329 TTTAAGTAAT TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA 58090 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA 359 CTCGCAGAAA GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAG 58030 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGCAGAAA GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAG 419 CATGTTGCAA ATTGGAGGAA AATATTGTTG TCGAAAAATG CAGCTTTCGA TATCTATTTA 57970 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTTGCAA ATTGGAGGAA AATATTGTTG TCGAAAAATG CAGCTTTCGA TATCTATTTA 479 CATTTG 57964 |||||| CATTTG 485 hqPGS_C09HBa0168F14.1-2-_SGN-E289564+ (60129 60063,59963 59918,59472 59387,58376 58247,58119 57964) ******************************************************************************** EST sequence 124 +strand 548 n (File: SGN-E282960+) 1 GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATGTCGAG GAGAAAGACC AGGGAGCCTA 61 AGGAAGAGAC TGTTACACTT GGACCAGCAA CGAGGGAAGG TGAATTGGTG TTCGGTGTTG 121 CACACATTTT TGCATCGTTC AATGATACAT TCATTCACGT TACTGATTTG TCTGGAAGAG 181 AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC 241 CGTATGCTGC TATGCTTGCA GCTCAGGATG TGTCACAGCG ATGCAAGGAA CTTGGAATTA 301 ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA GACCAAGACT CCTGGTCCTG 361 GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT GAAAATTGGA CGTATAGAGG 421 ATGTTACTCC AATTCCCACC GATAGTACTC GCAGAAAGGG TGGTAGAAGG GGAAGGAGGC 481 TGTGAAGACT CTTTCTTTTT TCTGCAGCAT GTTGCAAATT GGAGGAAAAT ATTGTTGTCT 541 AAAAATGC Predicted gene structure (within gDNA segment 60945 to 57298): Exon 1 60345 60311 ( 35 n); cDNA 1 35 ( 35 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 36 155 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 156 201 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 202 287 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 288 417 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 57989 ( 131 n); cDNA 418 548 ( 131 n); score: 0.985 MATCH C09HBa0168F14.1-2- SGN-E282960+ 0.996 548 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E282960+ (60345 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57989) Alignment (genomic DNA sequence = upper lines): GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATGGTACT ATTTCTCGTG CTGAAATTTC 60286 |||||||||| |||||||||| |||||||||| ||||| GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATG..... .......... .......... 35 CATTTCATTA CTGAAGATTT GCTGTTTATG TCGATTATAT TTAGTTTGAT TTGATTAATT 60226 .......... .......... .......... .......... .......... .......... 35 TGAATTGAAA AACTGTATGT TCGATGAAAT TGTTTGTTTG TAGTCGAGGA GAAAGACCAG 60166 ||||||| |||||||||| .......... .......... .......... .......... ...TCGAGGA GAAAGACCAG 52 GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG AGGGAAGGTG AATTGGTGTT 60106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG AGGGAAGGTG AATTGGTGTT 112 CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATTGTGAGTG AGTTATGGTT 60046 |||||||||| |||||||||| |||||||||| |||||||||| ||| CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC ATT....... .......... 155 TTTGAAAATT TGATGTAGAA ATGTAGATTT GGCTTTGTTA TTTGTGTGTT TTACTGATTC 59986 .......... .......... .......... .......... .......... .......... 155 TTAGTGTATG TGATGAATGC AGCACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG 59926 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..CACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG 193 CATTACTGGT ATGCCTTATA GAAACAATTG TTTTATACTT TTGACTGTAT CCTTGTAGTT 59866 |||||||| CATTACTG.. .......... .......... .......... .......... .......... 201 ACTGATTAGC TGGTAGCAGT ATAATTGTTG CTTTCGATGC GAACATCGGT TTATGTATAA 59806 .......... .......... .......... .......... .......... .......... 201 ATGTAGATGC CTTTCTTCCA GGATGCTAAT TCTGTTGTTG TTATCCCTAT TGGATAGACA 59746 .......... .......... .......... .......... .......... .......... 201 TATATTTACT TTTTCAATAT AGATGAATGT AAGTGGTAGG AAATGTAGAG CATCTATAGT 59686 .......... .......... .......... .......... .......... .......... 201 TTTAGGGAAA TCAAGAATGT AGAGCATCTA TAGTTTTAGG GAATCCTTGA TATGGTTGAG 59626 .......... .......... .......... .......... .......... .......... 201 GCAGCAAATT ATTGGTATTA GAATATAATC CTTCTAGGAA GAAGGAAAAT GGGTATAGAG 59566 .......... .......... .......... .......... .......... .......... 201 GTTCCGTCTA GTGTGGAGTT TAATCTTAGT TGTTGATGTC GTAATGGTAT GGAGAAGCCT 59506 .......... .......... .......... .......... .......... .......... 201 TTCATCTCAA ATTGTTATAC ATTTTTGTTG CAGGTGGAAT GAAGGTGAAG GCTGACAGAG 59446 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTGGAAT GAAGGTGAAG GCTGACAGAG 228 ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG CGATGCAAGG 59386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG CGATGCAAG. 287 TAGTGTCTTG TTTGGTTCTG ATAAAGTCAA TTTCCTTAAT TCTACTTAAT TGTTAGTTAA 59326 .......... .......... .......... .......... .......... .......... 287 GCTCATCAGA TATAAAGTTG GTCTAGTTCA GGTCTATATC AATATAAACC ATTTATGTAT 59266 .......... .......... .......... .......... .......... .......... 287 GAACGAAAAA AATGAAGACT TTTTGCCTAT ATGGTACTGT TCACAGAGAT TAATATTAGA 59206 .......... .......... .......... .......... .......... .......... 287 TTTTATTTCT GAAGAAAGTC ACTATACTAA TTTCACTGGA TATTGATGTA ATGTTTAGTT 59146 .......... .......... .......... .......... .......... .......... 287 CTCCTGGATG TTGCATTCCA TGTTGGTGCA GGGATTTATC CTTTCTTGCA TTGACCAGTA 59086 .......... .......... .......... .......... .......... .......... 287 ATATAGGTGC CAAATTACAT AGCTCTTCTA TAAGTGTAGA GTGTTGCTTT GTAGATAAAA 59026 .......... .......... .......... .......... .......... .......... 287 TTTAGCAGTT TCGAAATTTA AGACCTTTTG GATCTTCTGA TGCCTCCCTT TTCTGAATGT 58966 .......... .......... .......... .......... .......... .......... 287 GTGCTAAAGC CAATAATTCT GCCGACTAGA CATTCGAAGA TCTTATAATG TACATGATGG 58906 .......... .......... .......... .......... .......... .......... 287 CCTTTACTCC TATCTATGTT TCTTGCTAGG ATGTAGATGG TCTATAAGAT TGTTTTTGGG 58846 .......... .......... .......... .......... .......... .......... 287 TTCCATATGC CTGATGCATC TTACTTTTGC TTAACAATAA AAAATTTGTG TATAATTGAT 58786 .......... .......... .......... .......... .......... .......... 287 TGGAATAAAT GCCATTCCTT CGAACATATT GTAGAGACCC GTAGATTTTA TGTCACCGGT 58726 .......... .......... .......... .......... .......... .......... 287 TTGGATCTAT TAGGCTTTGT TATGGAAGAT TCCATTCTGA AGTGATGTGT GCACCTTCAA 58666 .......... .......... .......... .......... .......... .......... 287 TTTTCGGACA CTTTTACCAC TAACAGTTGC ATAATCGCTG GTGGTGCTTG AACTATGGAA 58606 .......... .......... .......... .......... .......... .......... 287 AAATGTGTGC TTCAGATTCT ATTTAAGCGT CAAGGTTTCG GAATGGTGGT CAGAATCATT 58546 .......... .......... .......... .......... .......... .......... 287 GTTAATGGGT TCCATGCTAT GCCATTTATT CAGAGTCTAA ATATAGCTAC ACTATATTTA 58486 .......... .......... .......... .......... .......... .......... 287 AGACTCAAGC TCGGATACGT CCATCTTTAT CCATCTAGTC TGATGTCACT AGGTCTCGTC 58426 .......... .......... .......... .......... .......... .......... 287 ATCACTTGTT AATCTTTTAA AATATTATTT ATGAACTTTT GATTTACAGG AACTTGGAAT 58366 | |||||||||| .......... .......... .......... .......... .........G AACTTGGAAT 298 TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA CTCCTGGTCC 58306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA CTCCTGGTCC 358 TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG GACGTATAGG 58246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG GACGTATAG. 417 TACATAAGCT TTTCTCTCTT GCATCAGTAT CGTATCATGG CAAAGTTCTC GTAATATGCT 58186 .......... .......... .......... .......... .......... .......... 417 CCATATAATC TGTTGTATCA TTGTTATGTC ATCACTTTTA AGTAATTCTT CCTATATATT 58126 .......... .......... .......... .......... .......... .......... 417 TTGCAGAGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT GGTAGAAGGG 58066 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......AGGA TGTTACTCCA ATTCCCACCG ATAGTACTCG CAGAAAGGGT GGTAGAAGGG 471 GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG GAGGAAAATA 58006 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GAAGGAGGCT GTGAAGACTC TTTCTTTTTT CTGCAGCATG TTGCAAATTG GAGGAAAATA 531 TTGTTGTCGA AAAATGC 57989 |||||||| | ||||||| TTGTTGTCTA AAAATGC 548 hqPGS_C09HBa0168F14.1-2-_SGN-E282960+ (60345 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57989) ******************************************************************************** EST sequence 253 +strand 544 n (File: SGN-E311983+) 1 TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT CGAGGAGAAA 61 GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG AAGGTGAATT 121 GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC ACGTTACTGA 181 TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA AGGCTGACAG 241 AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC AGCGATGCAA 301 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 361 GACTCCTGGT CCTGGGGCCC AGTCCGCTTC TTAGAGCTTT GGCTCGTTCT GGCATGAAAA 421 TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA AAGGGTGGGA 481 GAAGGGGAAG GAGGCTTGGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC AAATTGGAGG 541 AAAA Predicted gene structure (within gDNA segment 60959 to 57398): Exon 1 60359 60311 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 50 169 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 170 215 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 216 301 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 302 432 ( 131 n); score: 0.973 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 0.95), Pa: 0.998 (s: 0.98) Exon 6 58119 58008 ( 112 n); cDNA 433 544 ( 112 n); score: 0.973 MATCH C09HBa0168F14.1-2- SGN-E311983+ 0.985 543 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E311983+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58008) Alignment (genomic DNA sequence = upper lines): TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGG TACTATTTCT 60300 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATG. .......... 49 CGTGCTGAAA TTTCCATTTC ATTACTGAAG ATTTGCTGTT TATGTCGATT ATATTTAGTT 60240 .......... .......... .......... .......... .......... .......... 49 TGATTTGATT AATTTGAATT GAAAAACTGT ATGTTCGATG AAATTGTTTG TTTGTAGTCG 60180 ||| .......... .......... .......... .......... .......... .......TCG 52 AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 60120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 112 GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATTGTG 60060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATT... 169 AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT GTTATTTGTG 60000 .......... .......... .......... .......... .......... .......... 169 TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT GTCTGGAAGA 59940 |||| |||||||||| |||||||||| .......... .......... .......... ......CACG TTACTGATTT GTCTGGAAGA 193 GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT ACTTTTGACT 59880 |||||||||| |||||||||| || GAAACTATGG TTCGCATTAC TG........ .......... .......... .......... 215 GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG ATGCGAACAT 59820 .......... .......... .......... .......... .......... .......... 215 CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT GTTGTTATCC 59760 .......... .......... .......... .......... .......... .......... 215 CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG TAGGAAATGT 59700 .......... .......... .......... .......... .......... .......... 215 AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT TAGGGAATCC 59640 .......... .......... .......... .......... .......... .......... 215 TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA GGAAGAAGGA 59580 .......... .......... .......... .......... .......... .......... 215 AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA TGTCGTAATG 59520 .......... .......... .......... .......... .......... .......... 215 GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG GAATGAAGGT 59460 ||| |||||||||| .......... .......... .......... .......... .......GTG GAATGAAGGT 228 GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 59400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 288 ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT TAATTCTACT 59340 |||||||||| ||| ACAGCGATGC AAG....... .......... .......... .......... .......... 301 TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA TATCAATATA 59280 .......... .......... .......... .......... .......... .......... 301 AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA CTGTTCACAG 59220 .......... .......... .......... .......... .......... .......... 301 AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC TGGATATTGA 59160 .......... .......... .......... .......... .......... .......... 301 TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT TATCCTTTCT 59100 .......... .......... .......... .......... .......... .......... 301 TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG TAGAGTGTTG 59040 .......... .......... .......... .......... .......... .......... 301 CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT CTGATGCCTC 58980 .......... .......... .......... .......... .......... .......... 301 CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG AAGATCTTAT 58920 .......... .......... .......... .......... .......... .......... 301 AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG ATGGTCTATA 58860 .......... .......... .......... .......... .......... .......... 301 AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA ATAAAAAATT 58800 .......... .......... .......... .......... .......... .......... 301 TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG ACCCGTAGAT 58740 .......... .......... .......... .......... .......... .......... 301 TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT CTGAAGTGAT 58680 .......... .......... .......... .......... .......... .......... 301 GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC GCTGGTGGTG 58620 .......... .......... .......... .......... .......... .......... 301 CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT TTCGGAATGG 58560 .......... .......... .......... .......... .......... .......... 301 TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT CTAAATATAG 58500 .......... .......... .......... .......... .......... .......... 301 CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT AGTCTGATGT 58440 .......... .......... .......... .......... .......... .......... 301 CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC TTTTGATTTA 58380 .......... .......... .......... .......... .......... .......... 301 CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 58320 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 358 AAGACTCCTG GTCCTGGTGC CCAGTCCGC- TCTTAGAGCT TTGGCTCGTT CTGGCATGAA 58261 |||||||||| ||||||| || ||||||||| |||||||||| |||||||||| |||||||||| AAGACTCCTG GTCCTGGGGC CCAGTCCGCT TCTTAGAGCT TTGGCTCGTT CTGGCATGAA 418 AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT CATGGCAAAG 58201 |||||||||| |||| AATTGGACGT ATAG...... .......... .......... .......... .......... 432 TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC TTTTAAGTAA 58141 .......... .......... .......... .......... .......... .......... 432 TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA 58081 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA 471 AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA GCATGTTGCA 58021 ||||||| || |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| AGGGTGGGAG AAGGGGAAGG AGGCTTGGAA GACTCTTTCT CTTTTCTGCA GCATGTTGCA 531 AATTGGAGGA AAA 58008 |||||||||| ||| AATTGGAGGA AAA 544 hqPGS_C09HBa0168F14.1-2-_SGN-E311983+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58008) ******************************************************************************** EST sequence 255 +strand 545 n (File: SGN-E347697+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAAAAACT ATGGTTCGCA TTACTGGTGG AATGAAAGTG 241 AAAGGTTACA GAGATAAATC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA AGATGTGTCA 301 CACCGATGCA AGGGACTTGG AATTAATGGT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 GACAAGACCA CGACTCCTGG TCCTGGTGCC CACTCCGCTC TTATAGCATT GGCTCGTTCT 421 GGCGTGAAAA ATGGACGCAT AGAGGATGTT ACTCCAATTA CCACCGATAG TACTCGCAGA 481 AAGAGTGGTA TAAGGAGAAG GAGGCTGTTA AAACTATTTC TCTTTTTTGC AGCATGTTGC 541 AAATT Predicted gene structure (within gDNA segment 60970 to 56849): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 0.978 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 0.98), Pa: 1.000 (s: 0.88) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 0.907 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.96), Pa: 1.000 (s: 0.94) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 0.923 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 0.88), Pa: 0.998 (s: 0.94) Exon 6 58119 58017 ( 103 n); cDNA 443 545 ( 103 n); score: 0.922 MATCH C09HBa0168F14.1-2- SGN-E347697+ 0.948 545 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E347697+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58017) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| | |||||||| |||||||||| ||| TGTCTGGAAG AAAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||| | |||| | | | ||||||| | |||||||||| |||||||||| |||||||||| GGAATGAAAG TGAAAGGTTA CAGAGATAAA TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 || ||||||| |||| ||||| |||| CAAGATGTGT CACACCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 | |||| |||||||||| ||||||||| |||||||||| |||||||||| .......... ....GGACTT GGAATTAATG GTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 || ||||||| || ||||||| |||||||||| |||| ||||| ||||| ||| |||||||||| GCGACAAGAC CACGACTCCT GGTCCTGGTG CCCACTCCGC TCTTATAGCA TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 ||||| |||| || |||||| |||| CTGGCGTGAA AAATGGACGC ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||| | |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTAC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| || |||||| |||| ||||| ||||||| || ||| ||||| ||||| |||| ACTCGCAGAA AGAGTGGTAT AAGGAGAAGG AGGCTGTTAA AACTATTTCT CTTTTTTGCA 531 GCATGTTGCA AATT 58017 |||||||||| |||| GCATGTTGCA AATT 545 hqPGS_C09HBa0168F14.1-2-_SGN-E347697+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58017) ******************************************************************************** EST sequence 119 +strand 543 n (File: SGN-E325916+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGTGGTA GAAGGGGAAG GAAGCTGTGA AGACTCTTTC TCTTTTCTGC AGCATGTTGC 541 AAA Predicted gene structure (within gDNA segment 60970 to 57409): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 58019 ( 101 n); cDNA 443 543 ( 101 n); score: 0.990 MATCH C09HBa0168F14.1-2- SGN-E325916+ 0.998 543 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E325916+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58019) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA 58031 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ACTCGCAGAA AGGGTGGTAG AAGGGGAAGG AAGCTGTGAA GACTCTTTCT CTTTTCTGCA 531 GCATGTTGCA AA 58019 |||||||||| || GCATGTTGCA AA 543 hqPGS_C09HBa0168F14.1-2-_SGN-E325916+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58019) ******************************************************************************** EST sequence 126 +strand 541 n (File: SGN-E304843+) 1 TTCTTCAAGC TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT 61 CGAGGAGAAA GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG 121 AAGGTGAATT GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC 181 ACGTTACTGA TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA 241 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 301 AGCGATGCAA GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA 361 ACAAGACCAA GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG 421 GCATGAAAAT TGGACGTATA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA 481 AGGGTGGTAG AAGGGGAAGG AGGCTGGGAA AACTCTTTCT CTTTTCTGCA GCATGTTGCA 541 A Predicted gene structure (within gDNA segment 60969 to 57410): Exon 1 60369 60311 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 60 179 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 180 225 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 226 311 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 312 441 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 58020 ( 100 n); cDNA 442 541 ( 100 n); score: 0.980 MATCH C09HBa0168F14.1-2- SGN-E304843+ 0.996 541 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E304843+ (60369 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58020) Alignment (genomic DNA sequence = upper lines): TTCTTCAAGC TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGG 60310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCTTCAAGC TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATG. 59 TACTATTTCT CGTGCTGAAA TTTCCATTTC ATTACTGAAG ATTTGCTGTT TATGTCGATT 60250 .......... .......... .......... .......... .......... .......... 59 ATATTTAGTT TGATTTGATT AATTTGAATT GAAAAACTGT ATGTTCGATG AAATTGTTTG 60190 .......... .......... .......... .......... .......... .......... 59 TTTGTAGTCG AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC 60130 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TCG AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC 112 AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 60070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 172 ATTCATTGTG AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT 60010 ||||||| ATTCATT... .......... .......... .......... .......... .......... 179 GTTATTTGTG TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT 59950 |||| |||||||||| .......... .......... .......... .......... ......CACG TTACTGATTT 193 GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT 59890 |||||||||| |||||||||| |||||||||| || GTCTGGAAGA GAAACTATGG TTCGCATTAC TG........ .......... .......... 225 ACTTTTGACT GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG 59830 .......... .......... .......... .......... .......... .......... 225 ATGCGAACAT CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT 59770 .......... .......... .......... .......... .......... .......... 225 GTTGTTATCC CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG 59710 .......... .......... .......... .......... .......... .......... 225 TAGGAAATGT AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT 59650 .......... .......... .......... .......... .......... .......... 225 TAGGGAATCC TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA 59590 .......... .......... .......... .......... .......... .......... 225 GGAAGAAGGA AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA 59530 .......... .......... .......... .......... .......... .......... 225 TGTCGTAATG GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG 59470 ||| .......... .......... .......... .......... .......... .......GTG 228 GAATGAAGGT GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC 59410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGAAGGT GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC 288 AGGATGTGTC ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT 59350 |||||||||| |||||||||| ||| AGGATGTGTC ACAGCGATGC AAG....... .......... .......... .......... 311 TAATTCTACT TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA 59290 .......... .......... .......... .......... .......... .......... 311 TATCAATATA AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA 59230 .......... .......... .......... .......... .......... .......... 311 CTGTTCACAG AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC 59170 .......... .......... .......... .......... .......... .......... 311 TGGATATTGA TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT 59110 .......... .......... .......... .......... .......... .......... 311 TATCCTTTCT TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG 59050 .......... .......... .......... .......... .......... .......... 311 TAGAGTGTTG CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT 58990 .......... .......... .......... .......... .......... .......... 311 CTGATGCCTC CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG 58930 .......... .......... .......... .......... .......... .......... 311 AAGATCTTAT AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG 58870 .......... .......... .......... .......... .......... .......... 311 ATGGTCTATA AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA 58810 .......... .......... .......... .......... .......... .......... 311 ATAAAAAATT TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG 58750 .......... .......... .......... .......... .......... .......... 311 ACCCGTAGAT TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT 58690 .......... .......... .......... .......... .......... .......... 311 CTGAAGTGAT GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC 58630 .......... .......... .......... .......... .......... .......... 311 GCTGGTGGTG CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT 58570 .......... .......... .......... .......... .......... .......... 311 TTCGGAATGG TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT 58510 .......... .......... .......... .......... .......... .......... 311 CTAAATATAG CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT 58450 .......... .......... .......... .......... .......... .......... 311 AGTCTGATGT CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC 58390 .......... .......... .......... .......... .......... .......... 311 TTTTGATTTA CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 58330 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 358 CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC 58270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC 418 TGGCATGAAA ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC 58210 |||||||||| |||||||||| ||| TGGCATGAAA ATTGGACGTA TAG....... .......... .......... .......... 441 ATGGCAAAGT TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT 58150 .......... .......... .......... .......... .......... .......... 441 TTTAAGTAAT TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA 58090 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA 471 CTCGCAGAAA GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAG 58030 |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| CTCGCAGAAA GGGTGGTAGA AGGGGAAGGA GGCTGGGAAA ACTCTTTCTC TTTTCTGCAG 531 CATGTTGCAA 58020 |||||||||| CATGTTGCAA 541 hqPGS_C09HBa0168F14.1-2-_SGN-E304843+ (60369 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58020) ******************************************************************************** EST sequence 175 +strand 528 n (File: SGN-E310002+) 1 TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT CGAGGAGAAA 61 GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG AAGGTGAATT 121 GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC ACGTTACTGA 181 TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA AGGCTGACAG 241 AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAT GATGTGTCAC AGCGATGCAA 301 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACATGACCAA 361 GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 421 TGGACGTATA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGCAGAA AGGGTGGTAG 481 AAGGGGAAGG AGGCTGTGAA GACTCTTTCT CTTTTCTGCA TCATGTTG Predicted gene structure (within gDNA segment 60959 to 57341): Exon 1 60359 60311 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 50 169 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 170 215 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 216 301 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 302 431 ( 130 n); score: 0.992 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 58023 ( 97 n); cDNA 432 528 ( 97 n); score: 0.990 MATCH C09HBa0168F14.1-2- SGN-E310002+ 0.993 528 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E310002+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58023) Alignment (genomic DNA sequence = upper lines): TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGG TACTATTTCT 60300 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATG. .......... 49 CGTGCTGAAA TTTCCATTTC ATTACTGAAG ATTTGCTGTT TATGTCGATT ATATTTAGTT 60240 .......... .......... .......... .......... .......... .......... 49 TGATTTGATT AATTTGAATT GAAAAACTGT ATGTTCGATG AAATTGTTTG TTTGTAGTCG 60180 ||| .......... .......... .......... .......... .......... .......TCG 52 AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 60120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 112 GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATTGTG 60060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATT... 169 AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT GTTATTTGTG 60000 .......... .......... .......... .......... .......... .......... 169 TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT GTCTGGAAGA 59940 |||| |||||||||| |||||||||| .......... .......... .......... ......CACG TTACTGATTT GTCTGGAAGA 193 GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT ACTTTTGACT 59880 |||||||||| |||||||||| || GAAACTATGG TTCGCATTAC TG........ .......... .......... .......... 215 GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG ATGCGAACAT 59820 .......... .......... .......... .......... .......... .......... 215 CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT GTTGTTATCC 59760 .......... .......... .......... .......... .......... .......... 215 CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG TAGGAAATGT 59700 .......... .......... .......... .......... .......... .......... 215 AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT TAGGGAATCC 59640 .......... .......... .......... .......... .......... .......... 215 TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA GGAAGAAGGA 59580 .......... .......... .......... .......... .......... .......... 215 AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA TGTCGTAATG 59520 .......... .......... .......... .......... .......... .......... 215 GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG GAATGAAGGT 59460 ||| |||||||||| .......... .......... .......... .......... .......GTG GAATGAAGGT 228 GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 59400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC ATGATGTGTC 288 ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT TAATTCTACT 59340 |||||||||| ||| ACAGCGATGC AAG....... .......... .......... .......... .......... 301 TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA TATCAATATA 59280 .......... .......... .......... .......... .......... .......... 301 AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA CTGTTCACAG 59220 .......... .......... .......... .......... .......... .......... 301 AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC TGGATATTGA 59160 .......... .......... .......... .......... .......... .......... 301 TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT TATCCTTTCT 59100 .......... .......... .......... .......... .......... .......... 301 TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG TAGAGTGTTG 59040 .......... .......... .......... .......... .......... .......... 301 CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT CTGATGCCTC 58980 .......... .......... .......... .......... .......... .......... 301 CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG AAGATCTTAT 58920 .......... .......... .......... .......... .......... .......... 301 AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG ATGGTCTATA 58860 .......... .......... .......... .......... .......... .......... 301 AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA ATAAAAAATT 58800 .......... .......... .......... .......... .......... .......... 301 TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG ACCCGTAGAT 58740 .......... .......... .......... .......... .......... .......... 301 TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT CTGAAGTGAT 58680 .......... .......... .......... .......... .......... .......... 301 GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC GCTGGTGGTG 58620 .......... .......... .......... .......... .......... .......... 301 CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT TTCGGAATGG 58560 .......... .......... .......... .......... .......... .......... 301 TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT CTAAATATAG 58500 .......... .......... .......... .......... .......... .......... 301 CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT AGTCTGATGT 58440 .......... .......... .......... .......... .......... .......... 301 CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC TTTTGATTTA 58380 .......... .......... .......... .......... .......... .......... 301 CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 58320 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACATGACC 358 AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 58260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 418 ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC ATGGCAAAGT 58200 |||||||||| ||| ATTGGACGTA TAG....... .......... .......... .......... .......... 431 TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT TTTAAGTAAT 58140 .......... .......... .......... .......... .......... .......... 431 TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGCAGAAA 58080 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGCAGAAA 471 GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAG CATGTTG 58023 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||| GGGTGGTAGA AGGGGAAGGA GGCTGTGAAG ACTCTTTCTC TTTTCTGCAT CATGTTG 528 hqPGS_C09HBa0168F14.1-2-_SGN-E310002+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58023) ******************************************************************************** EST sequence 90 -strand 510 n (File: SGN-E309144-) 1 ATGTCGAGGA GAAAGACCAG AGAGCCCAAG GAAGAGACTG TTACCCTTGG ACCAGCTACC 61 AGGGAAGGTG AATTGGTCTT TGGTGTTGCT CACATTTTCG CCTCTTTCAA TGACACATTC 121 ATTCATGTGA CTGATTTGTC TGGACGCGAA ACAATGGTTC GCATTACTGG TGGCATGAAG 181 GTGAAGGCTG ACAGAGATGA ATCTTCTCCT TATGCTGCTA TGCTTGCAGC ACAAGATGTT 241 TCTCAACGAT GCAAGGAGCT TGGAATTAAT GCCCTTCACA TTAAGCTTCG GGCTACAGGT 301 GGGAACAAAA CCAAGACTCC TGGTCCTGGT GCCCAGTCTG CTCTTAGAGC CCTTGCTCGA 361 TCCGGAATGA AAATTGGACG CATAGAGGAT GTTACTCCTA TTCCCACCGA CAGTACTCGC 421 AGAAAGGGTG GTAGAAGAGG AAGGAGGCTG TGAATTCTTC TCAGCAACAT ACATGCTACA 481 TGNGCGGAAT ATTTTGGTTA AGAATGCAAC Predicted gene structure (within gDNA segment 60813 to 56891): Exon 1 60182 60063 ( 120 n); cDNA 4 123 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 124 169 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 170 255 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 256 385 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 58051 ( 69 n); cDNA 386 454 ( 69 n); score: 0.957 MATCH C09HBa0168F14.1-2- SGN-E309144- 0.906 451 0.884 C PGS_C09HBa0168F14.1-2-_SGN-E309144- (60182 60063,59963 59918,59472 59387,58376 58247,58119 58051) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 63 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 123 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 123 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 144 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 169 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 169 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 169 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 169 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 169 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 169 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 169 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 179 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 239 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 255 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 255 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 255 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 255 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 255 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 255 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 255 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 255 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 255 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 255 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 255 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 255 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 255 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 255 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 255 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 255 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 255 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 309 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 369 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 385 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 385 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 422 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AA 58051 |||||||||| ||||| |||| |||||||||| || AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG AA 454 hqPGS_C09HBa0168F14.1-2-_SGN-E309144- (60182 60063,59963 59918,59472 59387,58376 58247,58119 58051) ******************************************************************************** EST sequence 230 +strand 594 n (File: SGN-E309143+) 1 CAAGCTTCAG CAGCAGCAGC AGCAGCACAC CTGCAAATCA ACCTTAGCCA TGTCGAGGAG 61 AAAGACCAGA GAGCCCAAGG AAGAGACTGT TACCCTTGGA CCAGCTACCA GGGAAGGTGA 121 ATTGGTCTTT GGTGTTGCTC ACATTTTCGC CTCTTTCAAT GACACATTCA TTCATGTGAC 181 TGATTTGTCT GGACGCGAAA CAATGGTTCG CATTACTGGT GGCATGAAGG TGAAGGCTGA 241 CAGAGATGAA TCTTCTCCTT ATGCTGCTAT GCTTGCAGCA CAAGATGTTT CTCAACGATG 301 CAAGGAGCTT GGAATTAATG CCCTTCACAT TAAGCTTCGG GCTACAGGTG GGAACAAAAC 361 CAAGACTCCT GGTCCTGGTG CCCAGTCTGC TCTTAGAGCC CTTGCTCGAT CCGGAATGAA 421 AATTGGACGC ATAGAGGATG TTACTCCTAT TCCCACCGAC AGTACTCGCA GAAAGGGTGG 481 TAGAAGAGGA AGGAGGCTGT GAATTCTTCT CAGCAACATA CATGCTACAT GGCGGAATAT 541 TTTGGTTAAG AATGCAACTC TGTTTGTGTT TTACAACTTA GTTTTGAACA TTTT Predicted gene structure (within gDNA segment 61293 to 56531): Exon 1 60182 60063 ( 120 n); cDNA 53 172 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 173 218 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 219 304 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 305 434 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 58051 ( 69 n); cDNA 435 503 ( 69 n); score: 0.957 MATCH C09HBa0168F14.1-2- SGN-E309143+ 0.906 451 0.759 C PGS_C09HBa0168F14.1-2-_SGN-E309143+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58051) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 112 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 172 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 172 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 193 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 218 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 218 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 218 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 218 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 218 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 218 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 218 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 228 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 288 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 304 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 304 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 304 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 304 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 304 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 304 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 304 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 304 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 304 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 304 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 304 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 304 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 304 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 304 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 304 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 304 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 304 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 358 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 418 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 434 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 434 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 471 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AA 58051 |||||||||| ||||| |||| |||||||||| || AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG AA 503 hqPGS_C09HBa0168F14.1-2-_SGN-E309143+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58051) ******************************************************************************** EST sequence 188 +strand 656 n (File: SGN-E548660+) 1 GTTTTTCAAG CTTCAGCAGC AGCAGCAGCA GCACACCTGC AAATCAACCT TAGCCATGTC 61 GAGGAGAAAG ACCAGAGAGC CCAAGGAAGA GACTGTTACC CTTGGACCAG CTACCAGGGA 121 AGGTGAATTG GTCTTTGGTG TTGCTCACAT TTTCGCCTCT TTCAATGACA CATTCATTCA 181 TGTGACTGAT TTGTCTGGAC GCGAAACAAT GGTTCGCATT ACTGGTGGCA TGAAGGTGAA 241 GGCTGACAGA GATGAATCTT CTCCTTATGC TGCTATGCTT GCAGCACAAG ATGTTTCTCA 301 ACGATGCAAG GAGCTTGGAA TTAATGCCCT TCACATTAAG CTTCGGGCTA CAGGTGGGAA 361 CAAAACCAAG ACTCCTGGTC CTGGTGCCCA GTCTGCTCTT AGAGCCCTTG CTCGATCCGG 421 AATGAAAATT GGACGCATAG AGGATGTTAC TCCTATTCCC ACCGACAGTA CTCGCAGAAA 481 GGGTGGTAGA AGAGGAAGGA GGCTGTGAAT TCTTCTCAGC AACATACATG CTACATGGCG 541 GAATATTTTG GTTAAGAATG CAACTCTGTT TGTGTTTTAC AACTTAGTTT TTGACATTTT 601 GTAGCCAGAG TTGCAAGTCA TTCTGACTTG TGATCATTTG GAGCTTTTTC AATCTT Predicted gene structure (within gDNA segment 61353 to 55971): Exon 1 60182 60063 ( 120 n); cDNA 59 178 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 179 224 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 225 310 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 311 440 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 58052 ( 68 n); cDNA 441 508 ( 68 n); score: 0.956 Intron 5 58051 57051 (1001 n); Pd: 0.000 (s: 0.96), Pa: 0.958 (s: 0) Exon 6 57050 57030 ( 21 n); cDNA 509 528 ( 20 n); score: 0.619 MATCH C09HBa0168F14.1-2- SGN-E548660+ 0.906 471 0.718 C PGS_C09HBa0168F14.1-2-_SGN-E548660+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58052,57050 57030) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 118 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 178 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 178 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 199 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 224 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 224 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 224 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 224 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 224 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 224 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 224 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 234 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 294 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 310 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 310 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 310 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 310 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 310 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 310 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 310 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 310 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 310 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 310 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 310 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 310 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 310 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 310 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 310 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 310 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 310 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 364 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 424 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 440 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 440 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 477 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| ||||| |||| |||||||||| | AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG A......... .......... .......... 508 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 .......... .......... .......... .......... .......... .......... 508 TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG 57903 .......... .......... .......... .......... .......... .......... 508 CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT 57843 .......... .......... .......... .......... .......... .......... 508 AAATTTATAC TCTTTTTATC TTCACAATTC TGTTAGTTAT AAAGCTTTAT TTCATTATGG 57783 .......... .......... .......... .......... .......... .......... 508 ATATATACTT GATAAAACGA ATTGCATAAA CAACTGTTTT CAGGACGTTG TATAGTCGAA 57723 .......... .......... .......... .......... .......... .......... 508 ATTTATAAAG ATGAAATTGA GATTTTGAAA TTATACAATT TTAGTATAAA TATTTGAATA 57663 .......... .......... .......... .......... .......... .......... 508 AAATCATTCA AAGATTAACT ATTATTTCAA AGTAAAACAT GGAATAAAGT TTAACCCCCA 57603 .......... .......... .......... .......... .......... .......... 508 AATAGTATTT TGAAACAAGC TATGTTTGAA ATAAAAAGAT ACCTTTCAAT AACAAATTGG 57543 .......... .......... .......... .......... .......... .......... 508 AAAATTAGGA AGTCTTATAT TAAAGACTAG TAAAAACAAC TTTTACATGC ATTATTTACT 57483 .......... .......... .......... .......... .......... .......... 508 TGAAGAGGAA AGACTCAAAT ATGTCATCGT ATTAAAAATT TGACTCATCA TTCATATCAT 57423 .......... .......... .......... .......... .......... .......... 508 TATTTGTTAA TTGAAATGAT ATATATGAAT CAATTTTTTT TTAAAATGAC ATAAATGAAT 57363 .......... .......... .......... .......... .......... .......... 508 CTTTTTTTTT TTATAAGTTT GATGACATGC TTGAGTTTTT GTCCTTTTTA AAACGTGATT 57303 .......... .......... .......... .......... .......... .......... 508 TAATTAATGT CATCCATATC ACATGTAAAA GATAATTTTG CAAAATCAAA ACTGTTTTTA 57243 .......... .......... .......... .......... .......... .......... 508 GGTAACAAAT AATGACATGG ATAAATTTTT TTTATAAAAA GAAAAATGAC ATAAATAAAC 57183 .......... .......... .......... .......... .......... .......... 508 TAAACTTTTA ACGATTGATG TACATGAATC TTTTTCTCAA AGTTCGATGA CACATTTGAA 57123 .......... .......... .......... .......... .......... .......... 508 GTTTTCTCTT TATTAAAAGA TTTCTTTGTT TTTTTTTTGC AAGAAATGGA TCTTCAATTT 57063 .......... .......... .......... .......... .......... .......... 508 GGGCCTATAC AGATCTCTTC GGCCCAACCA GCA 57030 || ||||| |||| || .......... ..AT-TCTTC TCAGCAACAT ACA 528 hqPGS_C09HBa0168F14.1-2-_SGN-E548660+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58052) ******************************************************************************** EST sequence 249 +strand 636 n (File: SGN-E346978+) 1 ATTGCAGCTA GGGTTTTTCA AGCTTCAGCA GCAGCAGCAG CAGCACACCT GCAAATCAAC 61 CTTAGCCATG TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC 121 AGCTACCAGG GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA 181 CACATTCATT CATGTGACTG ATTTGTCTGG ACGCGAAACA ATGGTTCGCA TTACTGGTGG 241 CATGAAGGTG AAGGCTGACA GAGATGAATC TTCTCCTTAT GCTGCTATGC TTGCAGCACA 301 AGATGTTTCT CAACGATGCA AGGAGCTTGG AATTAATGCC CTTCACATTA AGCTTCGGGC 361 TACAGGTGGG AACAAAACCA AGACTCCTGG TCCTGGTGCC CAGTCTGCTC TTAGAGCCCT 421 TGCTCGATCC GGAATGAAAA TTGGACGCAT AGAGGATGTT ACTCCTATTC CCACCGACAG 481 TACTCGCAGA AAGGGTGGTA GAAGAGGAAG GAGGCTGTGA ATTCTTCTCA GCAACATACA 541 TGCTACATGG CGGAATATTT TGGTTAAGAA TGCAACTCTG TTTGTGTTTT ACAACTTTAT 601 TTTTGAACAA TTTGTAGCCA GAGTTGCAAG TCATTC Predicted gene structure (within gDNA segment 61473 to 56291): Exon 1 60182 60063 ( 120 n); cDNA 71 190 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 191 236 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 237 322 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 323 452 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.96) Exon 5 58119 58052 ( 68 n); cDNA 453 520 ( 68 n); score: 0.956 Intron 5 58051 57051 (1001 n); Pd: 0.000 (s: 0.96), Pa: 0.958 (s: 0) Exon 6 57050 57030 ( 21 n); cDNA 521 540 ( 20 n); score: 0.619 MATCH C09HBa0168F14.1-2- SGN-E346978+ 0.906 471 0.741 C PGS_C09HBa0168F14.1-2-_SGN-E346978+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58052,57050 57030) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 130 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 190 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 190 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 211 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 236 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 236 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 236 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 236 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 236 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 236 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 236 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 246 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 306 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 322 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 322 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 322 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 322 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 322 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 322 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 322 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 322 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 322 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 322 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 322 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 322 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 322 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 322 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 322 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 322 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 322 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 376 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 436 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 452 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 452 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 489 AAAGGGTGGT AGAAGGGGAA GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG 58023 |||||||||| ||||| |||| |||||||||| | AAAGGGTGGT AGAAGAGGAA GGAGGCTGTG A......... .......... .......... 520 CAAATTGGAG GAAAATATTG TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA 57963 .......... .......... .......... .......... .......... .......... 520 TTTCTGAACA CTCTGTAGTT GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG 57903 .......... .......... .......... .......... .......... .......... 520 CCAGCTTTTC GAGATAGTTA AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT 57843 .......... .......... .......... .......... .......... .......... 520 AAATTTATAC TCTTTTTATC TTCACAATTC TGTTAGTTAT AAAGCTTTAT TTCATTATGG 57783 .......... .......... .......... .......... .......... .......... 520 ATATATACTT GATAAAACGA ATTGCATAAA CAACTGTTTT CAGGACGTTG TATAGTCGAA 57723 .......... .......... .......... .......... .......... .......... 520 ATTTATAAAG ATGAAATTGA GATTTTGAAA TTATACAATT TTAGTATAAA TATTTGAATA 57663 .......... .......... .......... .......... .......... .......... 520 AAATCATTCA AAGATTAACT ATTATTTCAA AGTAAAACAT GGAATAAAGT TTAACCCCCA 57603 .......... .......... .......... .......... .......... .......... 520 AATAGTATTT TGAAACAAGC TATGTTTGAA ATAAAAAGAT ACCTTTCAAT AACAAATTGG 57543 .......... .......... .......... .......... .......... .......... 520 AAAATTAGGA AGTCTTATAT TAAAGACTAG TAAAAACAAC TTTTACATGC ATTATTTACT 57483 .......... .......... .......... .......... .......... .......... 520 TGAAGAGGAA AGACTCAAAT ATGTCATCGT ATTAAAAATT TGACTCATCA TTCATATCAT 57423 .......... .......... .......... .......... .......... .......... 520 TATTTGTTAA TTGAAATGAT ATATATGAAT CAATTTTTTT TTAAAATGAC ATAAATGAAT 57363 .......... .......... .......... .......... .......... .......... 520 CTTTTTTTTT TTATAAGTTT GATGACATGC TTGAGTTTTT GTCCTTTTTA AAACGTGATT 57303 .......... .......... .......... .......... .......... .......... 520 TAATTAATGT CATCCATATC ACATGTAAAA GATAATTTTG CAAAATCAAA ACTGTTTTTA 57243 .......... .......... .......... .......... .......... .......... 520 GGTAACAAAT AATGACATGG ATAAATTTTT TTTATAAAAA GAAAAATGAC ATAAATAAAC 57183 .......... .......... .......... .......... .......... .......... 520 TAAACTTTTA ACGATTGATG TACATGAATC TTTTTCTCAA AGTTCGATGA CACATTTGAA 57123 .......... .......... .......... .......... .......... .......... 520 GTTTTCTCTT TATTAAAAGA TTTCTTTGTT TTTTTTTTGC AAGAAATGGA TCTTCAATTT 57063 .......... .......... .......... .......... .......... .......... 520 GGGCCTATAC AGATCTCTTC GGCCCAACCA GCA 57030 || ||||| |||| || .......... ..AT-TCTTC TCAGCAACAT ACA 540 hqPGS_C09HBa0168F14.1-2-_SGN-E346978+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58052) ******************************************************************************** EST sequence 247 +strand 381 n (File: SGN-E293906+) 1 AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 61 ATTCATTCAC GTTACTGATT TGTCTGGAAG AGAAACTATG GCTCGCATTA CTGGTGGAAT 121 GAAGGTGAAG GCTGACAGAG ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA 181 TGTGTCACAG CGATGCAAGG AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC 241 AGGAGGCAAC AAGACCAAGA CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTATGGC 301 TCGTTCTGGC ATGAAAATTG GACGTATAGA GGATGTTACT CCAATTCCCA CCGATAGTAC 361 TCTCAGAAAG GGTGGTAGAA G Predicted gene structure (within gDNA segment 60729 to 57458): Exon 1 60129 60063 ( 67 n); cDNA 1 67 ( 67 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 0.98) Exon 2 59963 59918 ( 46 n); cDNA 68 113 ( 46 n); score: 0.978 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 114 199 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 200 329 ( 130 n); score: 0.992 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.98), Pa: 0.998 (s: 0.98) Exon 5 58119 58068 ( 52 n); cDNA 330 381 ( 52 n); score: 0.981 MATCH C09HBa0168F14.1-2- SGN-E293906+ 0.994 381 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E293906+ (60129 60063,59963 59918,59472 59387,58376 58247,58119 58068) Alignment (genomic DNA sequence = upper lines): AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 60070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGAGGGAA GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC 60 ATTCATTGTG AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT 60010 ||||||| ATTCATT... .......... .......... .......... .......... .......... 67 GTTATTTGTG TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT 59950 |||| |||||||||| .......... .......... .......... .......... ......CACG TTACTGATTT 81 GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT 59890 |||||||||| |||||||||| ||||||||| || GTCTGGAAGA GAAACTATGG CTCGCATTAC TG........ .......... .......... 113 ACTTTTGACT GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG 59830 .......... .......... .......... .......... .......... .......... 113 ATGCGAACAT CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT 59770 .......... .......... .......... .......... .......... .......... 113 GTTGTTATCC CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG 59710 .......... .......... .......... .......... .......... .......... 113 TAGGAAATGT AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT 59650 .......... .......... .......... .......... .......... .......... 113 TAGGGAATCC TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA 59590 .......... .......... .......... .......... .......... .......... 113 GGAAGAAGGA AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA 59530 .......... .......... .......... .......... .......... .......... 113 TGTCGTAATG GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG 59470 ||| .......... .......... .......... .......... .......... .......GTG 116 GAATGAAGGT GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC 59410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGAAGGT GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC 176 AGGATGTGTC ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT 59350 |||||||||| |||||||||| ||| AGGATGTGTC ACAGCGATGC AAG....... .......... .......... .......... 199 TAATTCTACT TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA 59290 .......... .......... .......... .......... .......... .......... 199 TATCAATATA AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA 59230 .......... .......... .......... .......... .......... .......... 199 CTGTTCACAG AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC 59170 .......... .......... .......... .......... .......... .......... 199 TGGATATTGA TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT 59110 .......... .......... .......... .......... .......... .......... 199 TATCCTTTCT TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG 59050 .......... .......... .......... .......... .......... .......... 199 TAGAGTGTTG CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT 58990 .......... .......... .......... .......... .......... .......... 199 CTGATGCCTC CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG 58930 .......... .......... .......... .......... .......... .......... 199 AAGATCTTAT AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG 58870 .......... .......... .......... .......... .......... .......... 199 ATGGTCTATA AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA 58810 .......... .......... .......... .......... .......... .......... 199 ATAAAAAATT TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG 58750 .......... .......... .......... .......... .......... .......... 199 ACCCGTAGAT TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT 58690 .......... .......... .......... .......... .......... .......... 199 CTGAAGTGAT GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC 58630 .......... .......... .......... .......... .......... .......... 199 GCTGGTGGTG CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT 58570 .......... .......... .......... .......... .......... .......... 199 TTCGGAATGG TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT 58510 .......... .......... .......... .......... .......... .......... 199 CTAAATATAG CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT 58450 .......... .......... .......... .......... .......... .......... 199 AGTCTGATGT CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC 58390 .......... .......... .......... .......... .......... .......... 199 TTTTGATTTA CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 58330 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG 246 CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC 58270 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAACAAGACC AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTA TGGCTCGTTC 306 TGGCATGAAA ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC 58210 |||||||||| |||||||||| ||| TGGCATGAAA ATTGGACGTA TAG....... .......... .......... .......... 329 ATGGCAAAGT TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT 58150 .......... .......... .......... .......... .......... .......... 329 TTTAAGTAAT TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA 58090 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA 359 CTCGCAGAAA GGGTGGTAGA AG 58068 ||| |||||| |||||||||| || CTCTCAGAAA GGGTGGTAGA AG 381 hqPGS_C09HBa0168F14.1-2-_SGN-E293906+ (60129 60063,59963 59918,59472 59387,58376 58247,58119 58068) ******************************************************************************** EST sequence 146 +strand 495 n (File: SGN-E285335+) 1 GCAGCTAGGG TTTTTCAAGC TTCAGCAGCA GCAGCAGCAG CACACCTGCA AATCAACCTT 61 AGCCATGTCG AGGAGAAAGA CCAGAGAGCC CAAGGAAGAG ACTGTTACCC TTGGACCAGC 121 TACCAGGGAA GGTGAATTGG TCTTTGGTGT TGCTCACATT TTCGCCTCTT TCAATGACAC 181 ATTCATTCAT GTGACTGATT TGTCTGGACG CGAAACAATG GTTCGCATTA CTGGTGGCAT 241 GAAGGTGAAG GCTGACAGAG ATGAATCTTC TCCTTATGCT GCTATGCTTG CAGCACAAGA 301 TGTTTCTCAA CGATGCAAGG AGCTTGGAAT TAATGCCCTT CACATTAAGC TTCGGGCTAC 361 AGGTGGGAAC AAAACCAAGA CTCCTGGTCC TGGTGCCCAG TCTGCTCTTA GAGCCCTTGC 421 TCGATCCGGA ATGAAAATTG GACGCATAGA GGATGTTACT CCTATTCCCA CCGACAGTAC 481 CTCGCAGAAA GGGTG Predicted gene structure (within gDNA segment 61443 to 56792): Exon 1 60182 60063 ( 120 n); cDNA 68 187 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 188 233 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 234 319 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 320 449 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0.90) Exon 5 58119 58075 ( 45 n); cDNA 450 495 ( 46 n); score: 0.900 MATCH C09HBa0168F14.1-2- SGN-E285335+ 0.896 427 0.863 C PGS_C09HBa0168F14.1-2-_SGN-E285335+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58075) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 127 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 187 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 187 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 208 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 233 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 233 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 233 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 233 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 233 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 233 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 233 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 243 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 303 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 319 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 319 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 319 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 319 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 319 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 319 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 319 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 319 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 319 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 319 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 319 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 319 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 319 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 319 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 319 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 319 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 319 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 373 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 433 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 449 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 449 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTA-CTCGCA 58084 ||||||| |||||| ||| |||||||| | ||| |||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACCTCGCA 486 GAAAGGGTG 58075 ||||||||| GAAAGGGTG 495 hqPGS_C09HBa0168F14.1-2-_SGN-E285335+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58075) ******************************************************************************** EST sequence 244 +strand 486 n (File: SGN-E315007+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA AGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 421 GGCATGAAAA TTGGACGTAT AGAGGATGTT ACTCCAATTC CCACCGATAG TACTCGCAGA 481 AAGGGT Predicted gene structure (within gDNA segment 60970 to 57466): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 442 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 58119 58076 ( 44 n); cDNA 443 486 ( 44 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E315007+ 0.997 486 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E315007+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58076) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 || ||||||| |||||||||| |||| CAAGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 58271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCGTT 418 CTGGCATGAA AATTGGACGT ATAGGTACAT AAGCTTTTCT CTCTTGCATC AGTATCGTAT 58211 |||||||||| |||||||||| |||| CTGGCATGAA AATTGGACGT ATAG...... .......... .......... .......... 442 CATGGCAAAG TTCTCGTAAT ATGCTCCATA TAATCTGTTG TATCATTGTT ATGTCATCAC 58151 .......... .......... .......... .......... .......... .......... 442 TTTTAAGTAA TTCTTCCTAT ATATTTTGCA GAGGATGTTA CTCCAATTCC CACCGATAGT 58091 ||||||||| |||||||||| |||||||||| .......... .......... .......... .AGGATGTTA CTCCAATTCC CACCGATAGT 471 ACTCGCAGAA AGGGT 58076 |||||||||| ||||| ACTCGCAGAA AGGGT 486 hqPGS_C09HBa0168F14.1-2-_SGN-E315007+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58076) ******************************************************************************** EST sequence 154 +strand 488 n (File: SGN-E303551+) 1 TTGCAGCTAG GGTTTTTCAA GCTTCAGCAG CAGCAGCAGC AGCACACCTG CAAATCAACC 61 TTAGCCATGT CGAGGAGAAA GACCAGAGAG CCCAAGGAAG AGACTGTTAC CCTTGGACCA 121 GCTACCAGGG AAGGTGAATT GGTCTTTGGT GTTGCTCACA TTTTCGCCTC TTTCAATGAC 181 ACATTCATTC ATGTGACTGA TTTGTCTGGA CGCGAAACAA TGGTTCGCAT TACTGGTGGC 241 ATGAAGGTGA AGGCTGACAG AGATGAATCT TCTCCTTATG CTGCTATGCT TGCAGCACAA 301 GATGTTTCTC AACGATGCAA GGAGCTTGGA ATTAATGCCC TTCACATTAA GCTTCGGGCT 361 ACAGGTGGGA ACAAAACCAA GACTCCTGGT CCTGGTGCCC AGTCTGCTCT TAGAGCCCTT 421 GCTCGATCCG GAATGAAAAT TGGACGCATA GAGGATGTTA CTCCTATTCC CACCGACAGT 481 ACTCGCAG Predicted gene structure (within gDNA segment 61463 to 56882): Exon 1 60182 60063 ( 120 n); cDNA 70 189 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 190 235 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 236 321 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 322 451 ( 130 n); score: 0.885 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.84), Pa: 0.998 (s: 0) Exon 5 58119 58083 ( 37 n); cDNA 452 488 ( 37 n); score: 0.946 MATCH C09HBa0168F14.1-2- SGN-E303551+ 0.896 419 0.859 C PGS_C09HBa0168F14.1-2-_SGN-E303551+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58083) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 129 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 189 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 189 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 210 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 235 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 235 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 235 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 235 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 235 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 235 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 235 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 245 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 305 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 321 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 321 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 321 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 321 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 321 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 321 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 321 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 321 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 321 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 321 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 321 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 321 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 321 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 321 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 321 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 321 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 321 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 375 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || || ||| ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGGAATG 435 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 |||||||||| | |||| AAAATTGGAC GCATAG.... .......... .......... .......... .......... 451 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 451 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACTCGCAG 58083 ||||||| |||||| ||| |||||||| | |||||||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACTCGCAG 488 hqPGS_C09HBa0168F14.1-2-_SGN-E303551+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58083) ******************************************************************************** EST sequence 167 +strand 365 n (File: SGN-E341349+) 1 ACGAGGGAAG GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA 61 TTCATTCACG TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG 121 AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT 181 GTGTCACAGC GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA 241 GGAGGCAACA AGACCAAGAC TCCTGGTCCT GGAGCCCAGT CCGCTCTTAG AGCTTTGGCT 301 CGTTCTGGCA TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT 361 CGCAG Predicted gene structure (within gDNA segment 60728 to 57473): Exon 1 60128 60063 ( 66 n); cDNA 1 66 ( 66 n); score: 1.000 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 67 112 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 113 198 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 58376 58247 ( 130 n); cDNA 199 328 ( 130 n); score: 0.992 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0) Exon 5 58119 58083 ( 37 n); cDNA 329 365 ( 37 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E341349+ 0.996 365 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E341349+ (60128 60063,59963 59918,59472 59387,58376 58247,58119 58083) Alignment (genomic DNA sequence = upper lines): ACGAGGGAAG GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA 60069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAGGGAAG GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA 60 TTCATTGTGA GTGAGTTATG GTTTTTGAAA ATTTGATGTA GAAATGTAGA TTTGGCTTTG 60009 |||||| TTCATT.... .......... .......... .......... .......... .......... 66 TTATTTGTGT GTTTTACTGA TTCTTAGTGT ATGTGATGAA TGCAGCACGT TACTGATTTG 59949 ||||| |||||||||| .......... .......... .......... .......... .....CACGT TACTGATTTG 81 TCTGGAAGAG AAACTATGGT TCGCATTACT GGTATGCCTT ATAGAAACAA TTGTTTTATA 59889 |||||||||| |||||||||| |||||||||| | TCTGGAAGAG AAACTATGGT TCGCATTACT G......... .......... .......... 112 CTTTTGACTG TATCCTTGTA GTTACTGATT AGCTGGTAGC AGTATAATTG TTGCTTTCGA 59829 .......... .......... .......... .......... .......... .......... 112 TGCGAACATC GGTTTATGTA TAAATGTAGA TGCCTTTCTT CCAGGATGCT AATTCTGTTG 59769 .......... .......... .......... .......... .......... .......... 112 TTGTTATCCC TATTGGATAG ACATATATTT ACTTTTTCAA TATAGATGAA TGTAAGTGGT 59709 .......... .......... .......... .......... .......... .......... 112 AGGAAATGTA GAGCATCTAT AGTTTTAGGG AAATCAAGAA TGTAGAGCAT CTATAGTTTT 59649 .......... .......... .......... .......... .......... .......... 112 AGGGAATCCT TGATATGGTT GAGGCAGCAA ATTATTGGTA TTAGAATATA ATCCTTCTAG 59589 .......... .......... .......... .......... .......... .......... 112 GAAGAAGGAA AATGGGTATA GAGGTTCCGT CTAGTGTGGA GTTTAATCTT AGTTGTTGAT 59529 .......... .......... .......... .......... .......... .......... 112 GTCGTAATGG TATGGAGAAG CCTTTCATCT CAAATTGTTA TACATTTTTG TTGCAGGTGG 59469 |||| .......... .......... .......... .......... .......... ......GTGG 116 AATGAAGGTG AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA 59409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAAGGTG AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA 176 GGATGTGTCA CAGCGATGCA AGGTAGTGTC TTGTTTGGTT CTGATAAAGT CAATTTCCTT 59349 |||||||||| |||||||||| || GGATGTGTCA CAGCGATGCA AG........ .......... .......... .......... 198 AATTCTACTT AATTGTTAGT TAAGCTCATC AGATATAAAG TTGGTCTAGT TCAGGTCTAT 59289 .......... .......... .......... .......... .......... .......... 198 ATCAATATAA ACCATTTATG TATGAACGAA AAAAATGAAG ACTTTTTGCC TATATGGTAC 59229 .......... .......... .......... .......... .......... .......... 198 TGTTCACAGA GATTAATATT AGATTTTATT TCTGAAGAAA GTCACTATAC TAATTTCACT 59169 .......... .......... .......... .......... .......... .......... 198 GGATATTGAT GTAATGTTTA GTTCTCCTGG ATGTTGCATT CCATGTTGGT GCAGGGATTT 59109 .......... .......... .......... .......... .......... .......... 198 ATCCTTTCTT GCATTGACCA GTAATATAGG TGCCAAATTA CATAGCTCTT CTATAAGTGT 59049 .......... .......... .......... .......... .......... .......... 198 AGAGTGTTGC TTTGTAGATA AAATTTAGCA GTTTCGAAAT TTAAGACCTT TTGGATCTTC 58989 .......... .......... .......... .......... .......... .......... 198 TGATGCCTCC CTTTTCTGAA TGTGTGCTAA AGCCAATAAT TCTGCCGACT AGACATTCGA 58929 .......... .......... .......... .......... .......... .......... 198 AGATCTTATA ATGTACATGA TGGCCTTTAC TCCTATCTAT GTTTCTTGCT AGGATGTAGA 58869 .......... .......... .......... .......... .......... .......... 198 TGGTCTATAA GATTGTTTTT GGGTTCCATA TGCCTGATGC ATCTTACTTT TGCTTAACAA 58809 .......... .......... .......... .......... .......... .......... 198 TAAAAAATTT GTGTATAATT GATTGGAATA AATGCCATTC CTTCGAACAT ATTGTAGAGA 58749 .......... .......... .......... .......... .......... .......... 198 CCCGTAGATT TTATGTCACC GGTTTGGATC TATTAGGCTT TGTTATGGAA GATTCCATTC 58689 .......... .......... .......... .......... .......... .......... 198 TGAAGTGATG TGTGCACCTT CAATTTTCGG ACACTTTTAC CACTAACAGT TGCATAATCG 58629 .......... .......... .......... .......... .......... .......... 198 CTGGTGGTGC TTGAACTATG GAAAAATGTG TGCTTCAGAT TCTATTTAAG CGTCAAGGTT 58569 .......... .......... .......... .......... .......... .......... 198 TCGGAATGGT GGTCAGAATC ATTGTTAATG GGTTCCATGC TATGCCATTT ATTCAGAGTC 58509 .......... .......... .......... .......... .......... .......... 198 TAAATATAGC TACACTATAT TTAAGACTCA AGCTCGGATA CGTCCATCTT TATCCATCTA 58449 .......... .......... .......... .......... .......... .......... 198 GTCTGATGTC ACTAGGTCTC GTCATCACTT GTTAATCTTT TAAAATATTA TTTATGAACT 58389 .......... .......... .......... .......... .......... .......... 198 TTTGATTTAC AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 58329 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 246 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 58269 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| AACAAGACCA AGACTCCTGG TCCTGGAGCC CAGTCCGCTC TTAGAGCTTT GGCTCGTTCT 306 GGCATGAAAA TTGGACGTAT AGGTACATAA GCTTTTCTCT CTTGCATCAG TATCGTATCA 58209 |||||||||| |||||||||| || GGCATGAAAA TTGGACGTAT AG........ .......... .......... .......... 328 TGGCAAAGTT CTCGTAATAT GCTCCATATA ATCTGTTGTA TCATTGTTAT GTCATCACTT 58149 .......... .......... .......... .......... .......... .......... 328 TTAAGTAATT CTTCCTATAT ATTTTGCAGA GGATGTTACT CCAATTCCCA CCGATAGTAC 58089 | |||||||||| |||||||||| |||||||||| .......... .......... .........A GGATGTTACT CCAATTCCCA CCGATAGTAC 359 TCGCAG 58083 |||||| TCGCAG 365 hqPGS_C09HBa0168F14.1-2-_SGN-E341349+ (60128 60063,59963 59918,59472 59387,58376 58247,58119 58083) ******************************************************************************** EST sequence 148 +strand 473 n (File: SGN-E241611+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG 181 TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG 241 CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC 301 GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 361 AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA 421 TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGC Predicted gene structure (within gDNA segment 60966 to 57475): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0) Exon 6 58119 58085 ( 35 n); cDNA 439 473 ( 35 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E241611+ 1.000 473 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E241611+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 172 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 176 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 193 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 222 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 222 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 222 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 222 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 222 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 222 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 222 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 228 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 288 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 308 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 308 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 308 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 308 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 308 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 308 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 308 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 308 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 308 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 308 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 308 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 308 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 308 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 308 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 308 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 308 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 308 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 358 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 418 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 438 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 438 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 471 GC 58085 || GC 473 hqPGS_C09HBa0168F14.1-2-_SGN-E241611+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) ******************************************************************************** EST sequence 213 +strand 473 n (File: SGN-E284776+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA TTCATTCACG 181 TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG AAGGTGAAGG 241 CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT GTGTCACAGC 301 GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 361 AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT CGTTCTGGCA 421 TGAAAATTGG ACGTATAGAG GATGTTACTC CAATTCCCAC CGATAGTACT CGC Predicted gene structure (within gDNA segment 60966 to 57475): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 309 438 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0) Exon 6 58119 58085 ( 35 n); cDNA 439 473 ( 35 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E284776+ 1.000 473 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E284776+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 172 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 176 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 193 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 222 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 222 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 222 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 222 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 222 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 222 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 222 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 228 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 288 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 308 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 308 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 308 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 308 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 308 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 308 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 308 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 308 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 308 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 308 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 308 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 308 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 308 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 308 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 308 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 308 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 308 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 358 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 418 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 438 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 438 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTACTCC AATTCCCACC GATAGTACTC 58087 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AGG ATGTTACTCC AATTCCCACC GATAGTACTC 471 GC 58085 || GC 473 hqPGS_C09HBa0168F14.1-2-_SGN-E284776+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) ******************************************************************************** EST sequence 195 +strand 466 n (File: SGN-E318951+) 1 TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGT CGAGGAGAAA 61 GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG AAGGTGAATT 121 GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC ACGTTACTGA 181 TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA AGGCTGACAG 241 AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC AGCGATGCAA 301 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCAA 361 GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG GCATGAAAAT 421 TGGACGTATA GAGGATGTTA CTCCAATTCC CACCGATAGT ACTCGC Predicted gene structure (within gDNA segment 60959 to 57475): Exon 1 60359 60311 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 50 169 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 170 215 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 216 301 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 302 431 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0) Exon 6 58119 58085 ( 35 n); cDNA 432 466 ( 35 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E318951+ 1.000 466 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E318951+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) Alignment (genomic DNA sequence = upper lines): TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATGG TACTATTTCT 60300 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTGAGTAT CTCTGAATTT TCTCACTATC AAGCTCAGCT GAAGCCATG. .......... 49 CGTGCTGAAA TTTCCATTTC ATTACTGAAG ATTTGCTGTT TATGTCGATT ATATTTAGTT 60240 .......... .......... .......... .......... .......... .......... 49 TGATTTGATT AATTTGAATT GAAAAACTGT ATGTTCGATG AAATTGTTTG TTTGTAGTCG 60180 ||| .......... .......... .......... .......... .......... .......TCG 52 AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 60120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTGTTACAC TTGGACCAGC AACGAGGGAA 112 GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATTGTG 60060 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTGAATTGG TGTTCGGTGT TGCACACATT TTTGCATCGT TCAATGATAC ATTCATT... 169 AGTGAGTTAT GGTTTTTGAA AATTTGATGT AGAAATGTAG ATTTGGCTTT GTTATTTGTG 60000 .......... .......... .......... .......... .......... .......... 169 TGTTTTACTG ATTCTTAGTG TATGTGATGA ATGCAGCACG TTACTGATTT GTCTGGAAGA 59940 |||| |||||||||| |||||||||| .......... .......... .......... ......CACG TTACTGATTT GTCTGGAAGA 193 GAAACTATGG TTCGCATTAC TGGTATGCCT TATAGAAACA ATTGTTTTAT ACTTTTGACT 59880 |||||||||| |||||||||| || GAAACTATGG TTCGCATTAC TG........ .......... .......... .......... 215 GTATCCTTGT AGTTACTGAT TAGCTGGTAG CAGTATAATT GTTGCTTTCG ATGCGAACAT 59820 .......... .......... .......... .......... .......... .......... 215 CGGTTTATGT ATAAATGTAG ATGCCTTTCT TCCAGGATGC TAATTCTGTT GTTGTTATCC 59760 .......... .......... .......... .......... .......... .......... 215 CTATTGGATA GACATATATT TACTTTTTCA ATATAGATGA ATGTAAGTGG TAGGAAATGT 59700 .......... .......... .......... .......... .......... .......... 215 AGAGCATCTA TAGTTTTAGG GAAATCAAGA ATGTAGAGCA TCTATAGTTT TAGGGAATCC 59640 .......... .......... .......... .......... .......... .......... 215 TTGATATGGT TGAGGCAGCA AATTATTGGT ATTAGAATAT AATCCTTCTA GGAAGAAGGA 59580 .......... .......... .......... .......... .......... .......... 215 AAATGGGTAT AGAGGTTCCG TCTAGTGTGG AGTTTAATCT TAGTTGTTGA TGTCGTAATG 59520 .......... .......... .......... .......... .......... .......... 215 GTATGGAGAA GCCTTTCATC TCAAATTGTT ATACATTTTT GTTGCAGGTG GAATGAAGGT 59460 ||| |||||||||| .......... .......... .......... .......... .......GTG GAATGAAGGT 228 GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 59400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGCTGAC AGAGATGAGT CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC 288 ACAGCGATGC AAGGTAGTGT CTTGTTTGGT TCTGATAAAG TCAATTTCCT TAATTCTACT 59340 |||||||||| ||| ACAGCGATGC AAG....... .......... .......... .......... .......... 301 TAATTGTTAG TTAAGCTCAT CAGATATAAA GTTGGTCTAG TTCAGGTCTA TATCAATATA 59280 .......... .......... .......... .......... .......... .......... 301 AACCATTTAT GTATGAACGA AAAAAATGAA GACTTTTTGC CTATATGGTA CTGTTCACAG 59220 .......... .......... .......... .......... .......... .......... 301 AGATTAATAT TAGATTTTAT TTCTGAAGAA AGTCACTATA CTAATTTCAC TGGATATTGA 59160 .......... .......... .......... .......... .......... .......... 301 TGTAATGTTT AGTTCTCCTG GATGTTGCAT TCCATGTTGG TGCAGGGATT TATCCTTTCT 59100 .......... .......... .......... .......... .......... .......... 301 TGCATTGACC AGTAATATAG GTGCCAAATT ACATAGCTCT TCTATAAGTG TAGAGTGTTG 59040 .......... .......... .......... .......... .......... .......... 301 CTTTGTAGAT AAAATTTAGC AGTTTCGAAA TTTAAGACCT TTTGGATCTT CTGATGCCTC 58980 .......... .......... .......... .......... .......... .......... 301 CCTTTTCTGA ATGTGTGCTA AAGCCAATAA TTCTGCCGAC TAGACATTCG AAGATCTTAT 58920 .......... .......... .......... .......... .......... .......... 301 AATGTACATG ATGGCCTTTA CTCCTATCTA TGTTTCTTGC TAGGATGTAG ATGGTCTATA 58860 .......... .......... .......... .......... .......... .......... 301 AGATTGTTTT TGGGTTCCAT ATGCCTGATG CATCTTACTT TTGCTTAACA ATAAAAAATT 58800 .......... .......... .......... .......... .......... .......... 301 TGTGTATAAT TGATTGGAAT AAATGCCATT CCTTCGAACA TATTGTAGAG ACCCGTAGAT 58740 .......... .......... .......... .......... .......... .......... 301 TTTATGTCAC CGGTTTGGAT CTATTAGGCT TTGTTATGGA AGATTCCATT CTGAAGTGAT 58680 .......... .......... .......... .......... .......... .......... 301 GTGTGCACCT TCAATTTTCG GACACTTTTA CCACTAACAG TTGCATAATC GCTGGTGGTG 58620 .......... .......... .......... .......... .......... .......... 301 CTTGAACTAT GGAAAAATGT GTGCTTCAGA TTCTATTTAA GCGTCAAGGT TTCGGAATGG 58560 .......... .......... .......... .......... .......... .......... 301 TGGTCAGAAT CATTGTTAAT GGGTTCCATG CTATGCCATT TATTCAGAGT CTAAATATAG 58500 .......... .......... .......... .......... .......... .......... 301 CTACACTATA TTTAAGACTC AAGCTCGGAT ACGTCCATCT TTATCCATCT AGTCTGATGT 58440 .......... .......... .......... .......... .......... .......... 301 CACTAGGTCT CGTCATCACT TGTTAATCTT TTAAAATATT ATTTATGAAC TTTTGATTTA 58380 .......... .......... .......... .......... .......... .......... 301 CAGGAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 58320 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAACTTG GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC 358 AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 58260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACTCCTG GTCCTGGTGC CCAGTCCGCT CTTAGAGCTT TGGCTCGTTC TGGCATGAAA 418 ATTGGACGTA TAGGTACATA AGCTTTTCTC TCTTGCATCA GTATCGTATC ATGGCAAAGT 58200 |||||||||| ||| ATTGGACGTA TAG....... .......... .......... .......... .......... 431 TCTCGTAATA TGCTCCATAT AATCTGTTGT ATCATTGTTA TGTCATCACT TTTAAGTAAT 58140 .......... .......... .......... .......... .......... .......... 431 TCTTCCTATA TATTTTGCAG AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGC 58085 |||||||||| |||||||||| |||||||||| ||||| .......... .......... AGGATGTTAC TCCAATTCCC ACCGATAGTA CTCGC 466 hqPGS_C09HBa0168F14.1-2-_SGN-E318951+ (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) ******************************************************************************** EST sequence 139 +strand 469 n (File: SGN-E378549+) 1 TTTTCATGCT TCAGCAGCAG CAGCAGCAGC ACACCTGCAA ATCAACCTTA GCCATGTCGA 61 GGAGAAAGAC CAGAGAGCCC AAGGAAGAGA CTGTTACCCT TGGACCAGCT ACCAGGGAAG 121 GTGAATTGGT CTTTGGTGTT GCTCACATTT TCGCCTCTTT CAATGACACA TTCATTCATG 181 TGACTGATTT GTCTGGACGC GAAACAATGG TTCGCATTAC TGGTGGCATG AAGGTGAAGG 241 CTGACAGAGA TGAATCTTCT CCTTATGCTG CTATGCTTGC AGCACAAGAT GTTTCTCAAC 301 GATGCAAGGA GCTTGGAATT AATGCCCTTC ACATTAAGCT TCGGGCTACA GGTGGGAACA 361 AACCAAGACT CCTGGTCCTG GTGCCCAGTC TGCTCTTAGA GCCCTTGCTC GATCCGAANN 421 NTGAAATGGA CGCATAGAGG ATGTTACTCC TATTCCCACC GACAGTACT Predicted gene structure (within gDNA segment 61333 to 56942): Exon 1 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58247 ( 130 n); cDNA 309 437 ( 129 n); score: 0.831 Intron 4 58246 58120 ( 127 n); Pd: 0.971 (s: 0.70), Pa: 0.998 (s: 0) Exon 5 58119 58088 ( 32 n); cDNA 438 469 ( 32 n); score: 0.938 MATCH C09HBa0168F14.1-2- SGN-E378549+ 0.875 414 0.883 C PGS_C09HBa0168F14.1-2-_SGN-E378549+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58088) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 116 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 176 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 176 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 197 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 222 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 222 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 222 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 222 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 222 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 222 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 222 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 232 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 292 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 308 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 308 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 308 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 308 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 308 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 308 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 308 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 308 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 308 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 308 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 308 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 308 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 308 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 308 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 308 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 308 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 308 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAA- 361 ACCAAGACTC CTGGTCCTGG TGCCCAGTCC GCTCTTAGAG CTTTGGCTCG TTCTGGCATG 58263 |||||||||| |||||||||| ||||||||| |||||||||| | | ||||| || | ACCAAGACTC CTGGTCCTGG TGCCCAGTCT GCTCTTAGAG CCCTTGCTCG ATCCGAANNN 421 AAAATTGGAC GTATAGGTAC ATAAGCTTTT CTCTCTTGCA TCAGTATCGT ATCATGGCAA 58203 || ||||| | |||| TGAAATGGAC GCATAG.... .......... .......... .......... .......... 437 AGTTCTCGTA ATATGCTCCA TATAATCTGT TGTATCATTG TTATGTCATC ACTTTTAAGT 58143 .......... .......... .......... .......... .......... .......... 437 AATTCTTCCT ATATATTTTG CAGAGGATGT TACTCCAATT CCCACCGATA GTACT 58088 ||||||| |||||| ||| |||||||| | ||||| .......... .......... ...AGGATGT TACTCCTATT CCCACCGACA GTACT 469 hqPGS_C09HBa0168F14.1-2-_SGN-E378549+ (60182 60063,59963 59918,59472 59387,58376 58247,58119 58088) ******************************************************************************** EST sequence 116 +strand 434 n (File: SGN-E313842+) 1 AATTTTCTCA CTATCAAGCT CAGCTGAAGC CATGTCGAGG AGAAAGACCA GGGAGCCTAA 61 GGAAGAGACT GTTACACTTG GACCAGCAAC GAGGGAAGGT GAATTGGTGT TCGGTGTATG 121 CACACATTTT AGCATCGTTC AATGATACAT TCATTCACGT TACTGATTTG TCTGGAGGAG 181 AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC TGACAGAGAT GAGTCTTCTC 241 CGAATGCTGC TGAGCTTGCA GCTCAGGATG TGTCACATCG ATGCAGGGAA CTCGGAGTTA 301 ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA GACCAAGACT CCTGGACCTG 361 GTGCCCAGAC CGCTCTGAGA GCTTTGGCTC GTTCTGGCAT GAAAATTGGA CGTATAGAGG 421 ATGTTACTCC AATT Predicted gene structure (within gDNA segment 60944 to 57467): Exon 1 60344 60311 ( 34 n); cDNA 1 34 ( 34 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 35 155 ( 121 n); score: 0.971 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 0.93), Pa: 0.995 (s: 0.98) Exon 3 59963 59918 ( 46 n); cDNA 156 201 ( 46 n); score: 0.978 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 0.98), Pa: 1.000 (s: 0.98) Exon 4 59472 59387 ( 86 n); cDNA 202 287 ( 86 n); score: 0.942 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.90), Pa: 1.000 (s: 0.96) Exon 5 58376 58247 ( 130 n); cDNA 288 417 ( 130 n); score: 0.962 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 0.96), Pa: 0.998 (s: 0) Exon 6 58119 58103 ( 17 n); cDNA 418 434 ( 17 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E313842+ 0.960 433 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E313842+ (60344 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58103) Alignment (genomic DNA sequence = upper lines): AATTTTCTCA CTATCAAGCT CAGCTGAAGC CATGGTACTA TTTCTCGTGC TGAAATTTCC 60285 |||||||||| |||||||||| |||||||||| |||| AATTTTCTCA CTATCAAGCT CAGCTGAAGC CATG...... .......... .......... 34 ATTTCATTAC TGAAGATTTG CTGTTTATGT CGATTATATT TAGTTTGATT TGATTAATTT 60225 .......... .......... .......... .......... .......... .......... 34 GAATTGAAAA ACTGTATGTT CGATGAAATT GTTTGTTTGT AGTCGAGGAG AAAGACCAGG 60165 |||||||| |||||||||| .......... .......... .......... .......... ..TCGAGGAG AAAGACCAGG 52 GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA GGGAAGGTGA ATTGGTGTTC 60105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA GGGAAGGTGA ATTGGTGTTC 112 GGTGT-TGCA CACATTTTTG CATCGTTCAA TGATACATTC ATTGTGAGTG AGTTATGGTT 60046 ||||| |||| |||||||| | |||||||||| |||||||||| ||| GGTGTATGCA CACATTTTAG CATCGTTCAA TGATACATTC ATT....... .......... 155 TTTGAAAATT TGATGTAGAA ATGTAGATTT GGCTTTGTTA TTTGTGTGTT TTACTGATTC 59986 .......... .......... .......... .......... .......... .......... 155 TTAGTGTATG TGATGAATGC AGCACGTTAC TGATTTGTCT GGAAGAGAAA CTATGGTTCG 59926 |||||||| |||||||||| ||| |||||| |||||||||| .......... .......... ..CACGTTAC TGATTTGTCT GGAGGAGAAA CTATGGTTCG 193 CATTACTGGT ATGCCTTATA GAAACAATTG TTTTATACTT TTGACTGTAT CCTTGTAGTT 59866 |||||||| CATTACTG.. .......... .......... .......... .......... .......... 201 ACTGATTAGC TGGTAGCAGT ATAATTGTTG CTTTCGATGC GAACATCGGT TTATGTATAA 59806 .......... .......... .......... .......... .......... .......... 201 ATGTAGATGC CTTTCTTCCA GGATGCTAAT TCTGTTGTTG TTATCCCTAT TGGATAGACA 59746 .......... .......... .......... .......... .......... .......... 201 TATATTTACT TTTTCAATAT AGATGAATGT AAGTGGTAGG AAATGTAGAG CATCTATAGT 59686 .......... .......... .......... .......... .......... .......... 201 TTTAGGGAAA TCAAGAATGT AGAGCATCTA TAGTTTTAGG GAATCCTTGA TATGGTTGAG 59626 .......... .......... .......... .......... .......... .......... 201 GCAGCAAATT ATTGGTATTA GAATATAATC CTTCTAGGAA GAAGGAAAAT GGGTATAGAG 59566 .......... .......... .......... .......... .......... .......... 201 GTTCCGTCTA GTGTGGAGTT TAATCTTAGT TGTTGATGTC GTAATGGTAT GGAGAAGCCT 59506 .......... .......... .......... .......... .......... .......... 201 TTCATCTCAA ATTGTTATAC ATTTTTGTTG CAGGTGGAAT GAAGGTGAAG GCTGACAGAG 59446 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GTGGAAT GAAGGTGAAG GCTGACAGAG 228 ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG CGATGCAAGG 59386 |||||||||| |||| ||||| ||| ||||| |||||||||| ||||||||| ||||||| | ATGAGTCTTC TCCGAATGCT GCTGAGCTTG CAGCTCAGGA TGTGTCACAT CGATGCAGG. 287 TAGTGTCTTG TTTGGTTCTG ATAAAGTCAA TTTCCTTAAT TCTACTTAAT TGTTAGTTAA 59326 .......... .......... .......... .......... .......... .......... 287 GCTCATCAGA TATAAAGTTG GTCTAGTTCA GGTCTATATC AATATAAACC ATTTATGTAT 59266 .......... .......... .......... .......... .......... .......... 287 GAACGAAAAA AATGAAGACT TTTTGCCTAT ATGGTACTGT TCACAGAGAT TAATATTAGA 59206 .......... .......... .......... .......... .......... .......... 287 TTTTATTTCT GAAGAAAGTC ACTATACTAA TTTCACTGGA TATTGATGTA ATGTTTAGTT 59146 .......... .......... .......... .......... .......... .......... 287 CTCCTGGATG TTGCATTCCA TGTTGGTGCA GGGATTTATC CTTTCTTGCA TTGACCAGTA 59086 .......... .......... .......... .......... .......... .......... 287 ATATAGGTGC CAAATTACAT AGCTCTTCTA TAAGTGTAGA GTGTTGCTTT GTAGATAAAA 59026 .......... .......... .......... .......... .......... .......... 287 TTTAGCAGTT TCGAAATTTA AGACCTTTTG GATCTTCTGA TGCCTCCCTT TTCTGAATGT 58966 .......... .......... .......... .......... .......... .......... 287 GTGCTAAAGC CAATAATTCT GCCGACTAGA CATTCGAAGA TCTTATAATG TACATGATGG 58906 .......... .......... .......... .......... .......... .......... 287 CCTTTACTCC TATCTATGTT TCTTGCTAGG ATGTAGATGG TCTATAAGAT TGTTTTTGGG 58846 .......... .......... .......... .......... .......... .......... 287 TTCCATATGC CTGATGCATC TTACTTTTGC TTAACAATAA AAAATTTGTG TATAATTGAT 58786 .......... .......... .......... .......... .......... .......... 287 TGGAATAAAT GCCATTCCTT CGAACATATT GTAGAGACCC GTAGATTTTA TGTCACCGGT 58726 .......... .......... .......... .......... .......... .......... 287 TTGGATCTAT TAGGCTTTGT TATGGAAGAT TCCATTCTGA AGTGATGTGT GCACCTTCAA 58666 .......... .......... .......... .......... .......... .......... 287 TTTTCGGACA CTTTTACCAC TAACAGTTGC ATAATCGCTG GTGGTGCTTG AACTATGGAA 58606 .......... .......... .......... .......... .......... .......... 287 AAATGTGTGC TTCAGATTCT ATTTAAGCGT CAAGGTTTCG GAATGGTGGT CAGAATCATT 58546 .......... .......... .......... .......... .......... .......... 287 GTTAATGGGT TCCATGCTAT GCCATTTATT CAGAGTCTAA ATATAGCTAC ACTATATTTA 58486 .......... .......... .......... .......... .......... .......... 287 AGACTCAAGC TCGGATACGT CCATCTTTAT CCATCTAGTC TGATGTCACT AGGTCTCGTC 58426 .......... .......... .......... .......... .......... .......... 287 ATCACTTGTT AATCTTTTAA AATATTATTT ATGAACTTTT GATTTACAGG AACTTGGAAT 58366 | |||| ||| | .......... .......... .......... .......... .........G AACTCGGAGT 298 TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA CTCCTGGTCC 58306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC AAGACCAAGA CTCCTGGACC 358 TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG GACGTATAGG 58246 |||||||||| ||||||| | |||||||||| |||||||||| |||||||||| ||||||||| TGGTGCCCAG ACCGCTCTGA GAGCTTTGGC TCGTTCTGGC ATGAAAATTG GACGTATAG. 417 TACATAAGCT TTTCTCTCTT GCATCAGTAT CGTATCATGG CAAAGTTCTC GTAATATGCT 58186 .......... .......... .......... .......... .......... .......... 417 CCATATAATC TGTTGTATCA TTGTTATGTC ATCACTTTTA AGTAATTCTT CCTATATATT 58126 .......... .......... .......... .......... .......... .......... 417 TTGCAGAGGA TGTTACTCCA ATT 58103 |||| |||||||||| ||| ......AGGA TGTTACTCCA ATT 434 hqPGS_C09HBa0168F14.1-2-_SGN-E313842+ (60344 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58103) ******************************************************************************** EST sequence 183 +strand 459 n (File: SGN-E312789+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT GGCTCACTGT GAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 121 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 181 CACGTTACTG ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG 241 AAGGCTGACA GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA TGATGTGTCA 301 CAGCGATGCA AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TACAGGAGGC 361 AACAAGACCA AGACTCCTGG TCCTGGTGCC CAGTCCGGTC TTAGAGCTTT GGCTCGTTTC 421 TGGCATGAAA ATTGGACGTA TAGAGGATGT TACTCCAAT Predicted gene structure (within gDNA segment 60970 to 57477): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 0.933 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.92), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 61 180 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 181 226 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 227 312 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 313 443 ( 131 n); score: 0.973 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 0.93), Pa: 0.998 (s: 0) Exon 6 58119 58104 ( 16 n); cDNA 444 459 ( 16 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E312789+ 0.979 458 0.998 C PGS_C09HBa0168F14.1-2-_SGN-E312789+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58104) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||| | ||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT GGCTCACTGT GAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 112 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 172 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 180 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 193 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 226 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 226 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 226 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 226 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 226 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 226 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 226 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 228 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 288 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 || ||||||| |||||||||| |||| CATGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 312 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 312 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 312 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 312 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 312 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 312 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 312 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 312 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 312 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 312 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 312 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 312 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 312 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 312 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 312 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 312 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 312 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 58331 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGGAG 358 GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGC TCTTAGAGCT TTGGCTCG-T 58272 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||| | GCAACAAGAC CAAGACTCCT GGTCCTGGTG CCCAGTCCGG TCTTAGAGCT TTGGCTCGTT 418 TCTGGCATGA AAATTGGACG TATAGGTACA TAAGCTTTTC TCTCTTGCAT CAGTATCGTA 58212 |||||||||| |||||||||| ||||| TCTGGCATGA AAATTGGACG TATAG..... .......... .......... .......... 443 TCATGGCAAA GTTCTCGTAA TATGCTCCAT ATAATCTGTT GTATCATTGT TATGTCATCA 58152 .......... .......... .......... .......... .......... .......... 443 CTTTTAAGTA ATTCTTCCTA TATATTTTGC AGAGGATGTT ACTCCAAT 58104 |||||||| |||||||| .......... .......... .......... ..AGGATGTT ACTCCAAT 459 hqPGS_C09HBa0168F14.1-2-_SGN-E312789+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58104) ******************************************************************************** EST sequence 179 +strand 447 n (File: SGN-E336882+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTGT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCACCA GTAAAGCGAT 121 GTGCATTCTA CATCTGAGTT TCAGACATTA CTGCATCGGC AATGATACAT TCATTCACGT 181 TACTGATTTG TCTGGAAGAG AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC 241 TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCAGGATG TGTCACAGCG 301 ATGCAAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA 361 GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT 421 GAAAATTGGA CGTATAGAGG ATGTTAC Predicted gene structure (within gDNA segment 60966 to 57537): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 0.982 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 175 ( 119 n); score: 0.817 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 0.74), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 176 221 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 222 307 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 308 437 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0) Exon 6 58119 58110 ( 10 n); cDNA 438 447 ( 10 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E336882+ 0.941 448 1.002 C PGS_C09HBa0168F14.1-2-_SGN-E336882+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58110) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTGT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCACCAGT 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT 60067 | | | || | ||| || | ||| | | ||||| | |||||| || |||||||||| AAAGCGATGT GCATTCTACA TCTGAGTTTC AGACATTACT GCATCG-GCA ATGATACATT 171 CATTGTGAGT GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT 60007 |||| CATT...... .......... .......... .......... .......... .......... 175 ATTTGTGTGT TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... .......... ...CACGTTA CTGATTTGTC 192 TGGAAGAGAA ACTATGGTTC GCATTACTGG TATGCCTTAT AGAAACAATT GTTTTATACT 59887 |||||||||| |||||||||| ||||||||| TGGAAGAGAA ACTATGGTTC GCATTACTG. .......... .......... .......... 221 TTTGACTGTA TCCTTGTAGT TACTGATTAG CTGGTAGCAG TATAATTGTT GCTTTCGATG 59827 .......... .......... .......... .......... .......... .......... 221 CGAACATCGG TTTATGTATA AATGTAGATG CCTTTCTTCC AGGATGCTAA TTCTGTTGTT 59767 .......... .......... .......... .......... .......... .......... 221 GTTATCCCTA TTGGATAGAC ATATATTTAC TTTTTCAATA TAGATGAATG TAAGTGGTAG 59707 .......... .......... .......... .......... .......... .......... 221 GAAATGTAGA GCATCTATAG TTTTAGGGAA ATCAAGAATG TAGAGCATCT ATAGTTTTAG 59647 .......... .......... .......... .......... .......... .......... 221 GGAATCCTTG ATATGGTTGA GGCAGCAAAT TATTGGTATT AGAATATAAT CCTTCTAGGA 59587 .......... .......... .......... .......... .......... .......... 221 AGAAGGAAAA TGGGTATAGA GGTTCCGTCT AGTGTGGAGT TTAATCTTAG TTGTTGATGT 59527 .......... .......... .......... .......... .......... .......... 221 CGTAATGGTA TGGAGAAGCC TTTCATCTCA AATTGTTATA CATTTTTGTT GCAGGTGGAA 59467 |||||| .......... .......... .......... .......... .......... ....GTGGAA 227 TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 59407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGTGAA GGCTGACAGA GATGAGTCTT CTCCGTATGC TGCTATGCTT GCAGCTCAGG 287 ATGTGTCACA GCGATGCAAG GTAGTGTCTT GTTTGGTTCT GATAAAGTCA ATTTCCTTAA 59347 |||||||||| |||||||||| ATGTGTCACA GCGATGCAAG .......... .......... .......... .......... 307 TTCTACTTAA TTGTTAGTTA AGCTCATCAG ATATAAAGTT GGTCTAGTTC AGGTCTATAT 59287 .......... .......... .......... .......... .......... .......... 307 CAATATAAAC CATTTATGTA TGAACGAAAA AAATGAAGAC TTTTTGCCTA TATGGTACTG 59227 .......... .......... .......... .......... .......... .......... 307 TTCACAGAGA TTAATATTAG ATTTTATTTC TGAAGAAAGT CACTATACTA ATTTCACTGG 59167 .......... .......... .......... .......... .......... .......... 307 ATATTGATGT AATGTTTAGT TCTCCTGGAT GTTGCATTCC ATGTTGGTGC AGGGATTTAT 59107 .......... .......... .......... .......... .......... .......... 307 CCTTTCTTGC ATTGACCAGT AATATAGGTG CCAAATTACA TAGCTCTTCT ATAAGTGTAG 59047 .......... .......... .......... .......... .......... .......... 307 AGTGTTGCTT TGTAGATAAA ATTTAGCAGT TTCGAAATTT AAGACCTTTT GGATCTTCTG 58987 .......... .......... .......... .......... .......... .......... 307 ATGCCTCCCT TTTCTGAATG TGTGCTAAAG CCAATAATTC TGCCGACTAG ACATTCGAAG 58927 .......... .......... .......... .......... .......... .......... 307 ATCTTATAAT GTACATGATG GCCTTTACTC CTATCTATGT TTCTTGCTAG GATGTAGATG 58867 .......... .......... .......... .......... .......... .......... 307 GTCTATAAGA TTGTTTTTGG GTTCCATATG CCTGATGCAT CTTACTTTTG CTTAACAATA 58807 .......... .......... .......... .......... .......... .......... 307 AAAAATTTGT GTATAATTGA TTGGAATAAA TGCCATTCCT TCGAACATAT TGTAGAGACC 58747 .......... .......... .......... .......... .......... .......... 307 CGTAGATTTT ATGTCACCGG TTTGGATCTA TTAGGCTTTG TTATGGAAGA TTCCATTCTG 58687 .......... .......... .......... .......... .......... .......... 307 AAGTGATGTG TGCACCTTCA ATTTTCGGAC ACTTTTACCA CTAACAGTTG CATAATCGCT 58627 .......... .......... .......... .......... .......... .......... 307 GGTGGTGCTT GAACTATGGA AAAATGTGTG CTTCAGATTC TATTTAAGCG TCAAGGTTTC 58567 .......... .......... .......... .......... .......... .......... 307 GGAATGGTGG TCAGAATCAT TGTTAATGGG TTCCATGCTA TGCCATTTAT TCAGAGTCTA 58507 .......... .......... .......... .......... .......... .......... 307 AATATAGCTA CACTATATTT AAGACTCAAG CTCGGATACG TCCATCTTTA TCCATCTAGT 58447 .......... .......... .......... .......... .......... .......... 307 CTGATGTCAC TAGGTCTCGT CATCACTTGT TAATCTTTTA AAATATTATT TATGAACTTT 58387 .......... .......... .......... .......... .......... .......... 307 TGATTTACAG GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 58327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAACTTGGAA TTAATGCTCT TCACATTAAG CTCCGAGCTA CAGGAGGCAA 357 CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 58267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACCAAG ACTCCTGGTC CTGGTGCCCA GTCCGCTCTT AGAGCTTTGG CTCGTTCTGG 417 CATGAAAATT GGACGTATAG GTACATAAGC TTTTCTCTCT TGCATCAGTA TCGTATCATG 58207 |||||||||| |||||||||| CATGAAAATT GGACGTATAG .......... .......... .......... .......... 437 GCAAAGTTCT CGTAATATGC TCCATATAAT CTGTTGTATC ATTGTTATGT CATCACTTTT 58147 .......... .......... .......... .......... .......... .......... 437 AAGTAATTCT TCCTATATAT TTTGCAGAGG ATGTTAC 58110 ||| ||||||| .......... .......... .......AGG ATGTTAC 447 hqPGS_C09HBa0168F14.1-2-_SGN-E336882+ (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58110) ******************************************************************************** EST sequence 161 +strand 447 n (File: SGN-E296899+) 1 TCAAGCTGCT GAGTATCTCT GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATGTCGAG 61 GAGAAAGACC AGGGAGCCTA AGGAAGAGAC TGTTACACTT GGACCAGCAA CGAGGGAAGG 121 TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTCACGT 181 TACTGATTTG TCTGGAAGAG AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC 241 TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCAAGATG TGTCACAGCG 301 ATGCAAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA 361 GACCAAGACT CCTGGTCCTG GTGCCCAGTC CGCTCTTAGA GCTTTGGCTC GTTCTGGCAT 421 GAAAATTGGA CGTATAGAGG ATGTTAC Predicted gene structure (within gDNA segment 60965 to 57537): Exon 1 60365 60311 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 56 175 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 176 221 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 222 307 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 5 58376 58247 ( 130 n); cDNA 308 437 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 (s: 1.00), Pa: 0.998 (s: 0) Exon 6 58119 58110 ( 10 n); cDNA 438 447 ( 10 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E296899+ 0.997 447 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E296899+ (60365 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58110) Alignment (genomic DNA sequence = upper lines): TCAAGCTGCT GAGTATCTCT GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATGGTACT 60306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCAAGCTGCT GAGTATCTCT GAATTTTCTC ACTATCAAGC TCAGCTGAAG CCATG..... 55 ATTTCTCGTG CTGAAATTTC CATTTCATTA CTGAAGATTT GCTGTTTATG TCGATTATAT 60246 .......... .......... .......... .......... .......... .......... 55 TTAGTTTGAT TTGATTAATT TGAATTGAAA AACTGTATGT TCGATGAAAT TGTTTGTTTG 60186 .......... .......... .......... .......... .......... .......... 55 TAGTCGAGGA GAAAGACCAG GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG 60126 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TCGAGGA GAAAGACCAG GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG 112 AGGGAAGGTG AATTGGTGTT CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC 60066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAAGGTG AATTGGTGTT CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC 172 ATTGTGAGTG AGTTATGGTT TTTGAAAATT TGATGTAGAA ATGTAGATTT GGCTTTGTTA 60006 ||| ATT....... .......... .......... .......... .......... .......... 175 TTTGTGTGTT TTACTGATTC TTAGTGTATG TGATGAATGC AGCACGTTAC TGATTTGTCT 59946 |||||||| |||||||||| .......... .......... .......... .......... ..CACGTTAC TGATTTGTCT 193 GGAAGAGAAA CTATGGTTCG CATTACTGGT ATGCCTTATA GAAACAATTG TTTTATACTT 59886 |||||||||| |||||||||| |||||||| GGAAGAGAAA CTATGGTTCG CATTACTG.. .......... .......... .......... 221 TTGACTGTAT CCTTGTAGTT ACTGATTAGC TGGTAGCAGT ATAATTGTTG CTTTCGATGC 59826 .......... .......... .......... .......... .......... .......... 221 GAACATCGGT TTATGTATAA ATGTAGATGC CTTTCTTCCA GGATGCTAAT TCTGTTGTTG 59766 .......... .......... .......... .......... .......... .......... 221 TTATCCCTAT TGGATAGACA TATATTTACT TTTTCAATAT AGATGAATGT AAGTGGTAGG 59706 .......... .......... .......... .......... .......... .......... 221 AAATGTAGAG CATCTATAGT TTTAGGGAAA TCAAGAATGT AGAGCATCTA TAGTTTTAGG 59646 .......... .......... .......... .......... .......... .......... 221 GAATCCTTGA TATGGTTGAG GCAGCAAATT ATTGGTATTA GAATATAATC CTTCTAGGAA 59586 .......... .......... .......... .......... .......... .......... 221 GAAGGAAAAT GGGTATAGAG GTTCCGTCTA GTGTGGAGTT TAATCTTAGT TGTTGATGTC 59526 .......... .......... .......... .......... .......... .......... 221 GTAATGGTAT GGAGAAGCCT TTCATCTCAA ATTGTTATAC ATTTTTGTTG CAGGTGGAAT 59466 ||||||| .......... .......... .......... .......... .......... ...GTGGAAT 228 GAAGGTGAAG GCTGACAGAG ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAGGA 59406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GAAGGTGAAG GCTGACAGAG ATGAGTCTTC TCCGTATGCT GCTATGCTTG CAGCTCAAGA 288 TGTGTCACAG CGATGCAAGG TAGTGTCTTG TTTGGTTCTG ATAAAGTCAA TTTCCTTAAT 59346 |||||||||| ||||||||| TGTGTCACAG CGATGCAAG. .......... .......... .......... .......... 307 TCTACTTAAT TGTTAGTTAA GCTCATCAGA TATAAAGTTG GTCTAGTTCA GGTCTATATC 59286 .......... .......... .......... .......... .......... .......... 307 AATATAAACC ATTTATGTAT GAACGAAAAA AATGAAGACT TTTTGCCTAT ATGGTACTGT 59226 .......... .......... .......... .......... .......... .......... 307 TCACAGAGAT TAATATTAGA TTTTATTTCT GAAGAAAGTC ACTATACTAA TTTCACTGGA 59166 .......... .......... .......... .......... .......... .......... 307 TATTGATGTA ATGTTTAGTT CTCCTGGATG TTGCATTCCA TGTTGGTGCA GGGATTTATC 59106 .......... .......... .......... .......... .......... .......... 307 CTTTCTTGCA TTGACCAGTA ATATAGGTGC CAAATTACAT AGCTCTTCTA TAAGTGTAGA 59046 .......... .......... .......... .......... .......... .......... 307 GTGTTGCTTT GTAGATAAAA TTTAGCAGTT TCGAAATTTA AGACCTTTTG GATCTTCTGA 58986 .......... .......... .......... .......... .......... .......... 307 TGCCTCCCTT TTCTGAATGT GTGCTAAAGC CAATAATTCT GCCGACTAGA CATTCGAAGA 58926 .......... .......... .......... .......... .......... .......... 307 TCTTATAATG TACATGATGG CCTTTACTCC TATCTATGTT TCTTGCTAGG ATGTAGATGG 58866 .......... .......... .......... .......... .......... .......... 307 TCTATAAGAT TGTTTTTGGG TTCCATATGC CTGATGCATC TTACTTTTGC TTAACAATAA 58806 .......... .......... .......... .......... .......... .......... 307 AAAATTTGTG TATAATTGAT TGGAATAAAT GCCATTCCTT CGAACATATT GTAGAGACCC 58746 .......... .......... .......... .......... .......... .......... 307 GTAGATTTTA TGTCACCGGT TTGGATCTAT TAGGCTTTGT TATGGAAGAT TCCATTCTGA 58686 .......... .......... .......... .......... .......... .......... 307 AGTGATGTGT GCACCTTCAA TTTTCGGACA CTTTTACCAC TAACAGTTGC ATAATCGCTG 58626 .......... .......... .......... .......... .......... .......... 307 GTGGTGCTTG AACTATGGAA AAATGTGTGC TTCAGATTCT ATTTAAGCGT CAAGGTTTCG 58566 .......... .......... .......... .......... .......... .......... 307 GAATGGTGGT CAGAATCATT GTTAATGGGT TCCATGCTAT GCCATTTATT CAGAGTCTAA 58506 .......... .......... .......... .......... .......... .......... 307 ATATAGCTAC ACTATATTTA AGACTCAAGC TCGGATACGT CCATCTTTAT CCATCTAGTC 58446 .......... .......... .......... .......... .......... .......... 307 TGATGTCACT AGGTCTCGTC ATCACTTGTT AATCTTTTAA AATATTATTT ATGAACTTTT 58386 .......... .......... .......... .......... .......... .......... 307 GATTTACAGG AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC 58326 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC 358 AAGACCAAGA CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC 58266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACCAAGA CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC 418 ATGAAAATTG GACGTATAGG TACATAAGCT TTTCTCTCTT GCATCAGTAT CGTATCATGG 58206 |||||||||| ||||||||| ATGAAAATTG GACGTATAG. .......... .......... .......... .......... 437 CAAAGTTCTC GTAATATGCT CCATATAATC TGTTGTATCA TTGTTATGTC ATCACTTTTA 58146 .......... .......... .......... .......... .......... .......... 437 AGTAATTCTT CCTATATATT TTGCAGAGGA TGTTAC 58110 |||| |||||| .......... .......... ......AGGA TGTTAC 447 hqPGS_C09HBa0168F14.1-2-_SGN-E296899+ (60365 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58110) ******************************************************************************** EST sequence 158 +strand 447 n (File: SGN-E338890+) 1 CGAGGGTTTC TTTAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA 61 GCCATGTCGA GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA 121 ACGAGGGAAG GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATACA 181 TTCATTCACG TTACTGATTT GTCTGGAAGA GAAACTATGG TTCGCATTAC TGGTGGAATG 241 AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT 301 GTGTCACAGC GATGCAAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA 361 GGAGGCAACA AGACCAAGAC TCCTGGTCCT GGTGCCCAGT ACGCTCTTAG AGCTTTGGCT 421 CGTTCTGGCA TGAAAATTGG ACGTATA Predicted gene structure (within gDNA segment 61093 to 57638): Exon 1 60374 60311 ( 64 n); cDNA 3 66 ( 64 n); score: 0.984 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 67 186 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 187 232 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 233 318 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58248 ( 129 n); cDNA 319 447 ( 129 n); score: 0.992 MATCH C09HBa0168F14.1-2- SGN-E338890+ 0.995 445 0.996 C PGS_C09HBa0168F14.1-2-_SGN-E338890+ (60374 60311,60182 60063,59963 59918,59472 59387,58376 58248) Alignment (genomic DNA sequence = upper lines): AGGGTTTCTT CAAGCTGCTG AGTATCTCTG AATTTTCTCA CTATCAAGCT CAGCTGAAGC 60315 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTTTCTT TAAGCTGCTG AGTATCTCTG AATTTTCTCA CTATCAAGCT CAGCTGAAGC 62 CATGGTACTA TTTCTCGTGC TGAAATTTCC ATTTCATTAC TGAAGATTTG CTGTTTATGT 60255 |||| CATG...... .......... .......... .......... .......... .......... 66 CGATTATATT TAGTTTGATT TGATTAATTT GAATTGAAAA ACTGTATGTT CGATGAAATT 60195 .......... .......... .......... .......... .......... .......... 66 GTTTGTTTGT AGTCGAGGAG AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA 60135 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..TCGAGGAG AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA 114 CCAGCAACGA GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT 60075 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCAACGA GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT 174 GATACATTCA TTGTGAGTGA GTTATGGTTT TTGAAAATTT GATGTAGAAA TGTAGATTTG 60015 |||||||||| || GATACATTCA TT........ .......... .......... .......... .......... 186 GCTTTGTTAT TTGTGTGTTT TACTGATTCT TAGTGTATGT GATGAATGCA GCACGTTACT 59955 ||||||||| .......... .......... .......... .......... .......... .CACGTTACT 195 GATTTGTCTG GAAGAGAAAC TATGGTTCGC ATTACTGGTA TGCCTTATAG AAACAATTGT 59895 |||||||||| |||||||||| |||||||||| ||||||| GATTTGTCTG GAAGAGAAAC TATGGTTCGC ATTACTG... .......... .......... 232 TTTATACTTT TGACTGTATC CTTGTAGTTA CTGATTAGCT GGTAGCAGTA TAATTGTTGC 59835 .......... .......... .......... .......... .......... .......... 232 TTTCGATGCG AACATCGGTT TATGTATAAA TGTAGATGCC TTTCTTCCAG GATGCTAATT 59775 .......... .......... .......... .......... .......... .......... 232 CTGTTGTTGT TATCCCTATT GGATAGACAT ATATTTACTT TTTCAATATA GATGAATGTA 59715 .......... .......... .......... .......... .......... .......... 232 AGTGGTAGGA AATGTAGAGC ATCTATAGTT TTAGGGAAAT CAAGAATGTA GAGCATCTAT 59655 .......... .......... .......... .......... .......... .......... 232 AGTTTTAGGG AATCCTTGAT ATGGTTGAGG CAGCAAATTA TTGGTATTAG AATATAATCC 59595 .......... .......... .......... .......... .......... .......... 232 TTCTAGGAAG AAGGAAAATG GGTATAGAGG TTCCGTCTAG TGTGGAGTTT AATCTTAGTT 59535 .......... .......... .......... .......... .......... .......... 232 GTTGATGTCG TAATGGTATG GAGAAGCCTT TCATCTCAAA TTGTTATACA TTTTTGTTGC 59475 .......... .......... .......... .......... .......... .......... 232 AGGTGGAATG AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC 59415 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTGGAATG AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC 290 AGCTCAGGAT GTGTCACAGC GATGCAAGGT AGTGTCTTGT TTGGTTCTGA TAAAGTCAAT 59355 |||||||||| |||||||||| |||||||| AGCTCAGGAT GTGTCACAGC GATGCAAG.. .......... .......... .......... 318 TTCCTTAATT CTACTTAATT GTTAGTTAAG CTCATCAGAT ATAAAGTTGG TCTAGTTCAG 59295 .......... .......... .......... .......... .......... .......... 318 GTCTATATCA ATATAAACCA TTTATGTATG AACGAAAAAA ATGAAGACTT TTTGCCTATA 59235 .......... .......... .......... .......... .......... .......... 318 TGGTACTGTT CACAGAGATT AATATTAGAT TTTATTTCTG AAGAAAGTCA CTATACTAAT 59175 .......... .......... .......... .......... .......... .......... 318 TTCACTGGAT ATTGATGTAA TGTTTAGTTC TCCTGGATGT TGCATTCCAT GTTGGTGCAG 59115 .......... .......... .......... .......... .......... .......... 318 GGATTTATCC TTTCTTGCAT TGACCAGTAA TATAGGTGCC AAATTACATA GCTCTTCTAT 59055 .......... .......... .......... .......... .......... .......... 318 AAGTGTAGAG TGTTGCTTTG TAGATAAAAT TTAGCAGTTT CGAAATTTAA GACCTTTTGG 58995 .......... .......... .......... .......... .......... .......... 318 ATCTTCTGAT GCCTCCCTTT TCTGAATGTG TGCTAAAGCC AATAATTCTG CCGACTAGAC 58935 .......... .......... .......... .......... .......... .......... 318 ATTCGAAGAT CTTATAATGT ACATGATGGC CTTTACTCCT ATCTATGTTT CTTGCTAGGA 58875 .......... .......... .......... .......... .......... .......... 318 TGTAGATGGT CTATAAGATT GTTTTTGGGT TCCATATGCC TGATGCATCT TACTTTTGCT 58815 .......... .......... .......... .......... .......... .......... 318 TAACAATAAA AAATTTGTGT ATAATTGATT GGAATAAATG CCATTCCTTC GAACATATTG 58755 .......... .......... .......... .......... .......... .......... 318 TAGAGACCCG TAGATTTTAT GTCACCGGTT TGGATCTATT AGGCTTTGTT ATGGAAGATT 58695 .......... .......... .......... .......... .......... .......... 318 CCATTCTGAA GTGATGTGTG CACCTTCAAT TTTCGGACAC TTTTACCACT AACAGTTGCA 58635 .......... .......... .......... .......... .......... .......... 318 TAATCGCTGG TGGTGCTTGA ACTATGGAAA AATGTGTGCT TCAGATTCTA TTTAAGCGTC 58575 .......... .......... .......... .......... .......... .......... 318 AAGGTTTCGG AATGGTGGTC AGAATCATTG TTAATGGGTT CCATGCTATG CCATTTATTC 58515 .......... .......... .......... .......... .......... .......... 318 AGAGTCTAAA TATAGCTACA CTATATTTAA GACTCAAGCT CGGATACGTC CATCTTTATC 58455 .......... .......... .......... .......... .......... .......... 318 CATCTAGTCT GATGTCACTA GGTCTCGTCA TCACTTGTTA ATCTTTTAAA ATATTATTTA 58395 .......... .......... .......... .......... .......... .......... 318 TGAACTTTTG ATTTACAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA 58335 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA 360 GGAGGCAACA AGACCAAGAC TCCTGGTCCT GGTGCCCAGT CCGCTCTTAG AGCTTTGGCT 58275 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| GGAGGCAACA AGACCAAGAC TCCTGGTCCT GGTGCCCAGT ACGCTCTTAG AGCTTTGGCT 420 CGTTCTGGCA TGAAAATTGG ACGTATA 58248 |||||||||| |||||||||| ||||||| CGTTCTGGCA TGAAAATTGG ACGTATA 447 hqPGS_C09HBa0168F14.1-2-_SGN-E338890+ (60374 60311,60182 60063,59963 59918,59472 59387,58376 58248) ******************************************************************************** EST sequence 232 +strand 436 n (File: SGN-E312500+) 1 CTTCAAGCTG GTGAGTATCT CTGAATTTGG TGACTATCAA GCTCAGCTGA AGCCATGTCG 61 AGGAGAAAGA CCAGGGAGCC TAAGGAAGAG ACTAGTGCAC TTGGACCAGC AACTATGGAA 121 GGTGAATTGG TGTTCGGAGT TGCACACATT TTTGCATAGG TCAATGATAC ATTCATTCAC 181 GTTACTGATT TGGCTGGAAG AGAAACTATG GTTCGCATTA CTGGTGGAAT GAAGGTGAAG 241 GCTGACAGAG ATGAGTCTTC TCCGCATGCT GCTATGCTTG CAGCTCAGGA TGTGTCACAG 301 CGATGCAAGG AACTTGGAAT TAATGCTCTT CACATTAAGC TCCGAGCTAC AGGAGGCAAC 361 AAGACCAAGA CTCCTGGTCC TGGTGCCCAG TCCGCTCTTA GAGCTTTGGC TCGTTCTGGC 421 ATGAAAATTG GACGTA Predicted gene structure (within gDNA segment 61343 to 57640): Exon 1 60367 60311 ( 57 n); cDNA 1 57 ( 57 n); score: 0.930 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.92), Pa: 1.000 (s: 0.94) Exon 2 60182 60063 ( 120 n); cDNA 58 177 ( 120 n); score: 0.933 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 0.94), Pa: 0.995 (s: 0.98) Exon 3 59963 59918 ( 46 n); cDNA 178 223 ( 46 n); score: 0.978 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 0.98), Pa: 1.000 (s: 0.98) Exon 4 59472 59387 ( 86 n); cDNA 224 309 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 5 58376 58250 ( 127 n); cDNA 310 436 ( 127 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E312500+ 0.967 436 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E312500+ (60367 60311,60182 60063,59963 59918,59472 59387,58376 58250) Alignment (genomic DNA sequence = upper lines): CTTCAAGCTG CTGAGTATCT CTGAATTTTC TCACTATCAA GCTCAGCTGA AGCCATGGTA 60308 |||||||||| ||||||||| |||||||| | |||||||| |||||||||| ||||||| CTTCAAGCTG GTGAGTATCT CTGAATTTGG TGACTATCAA GCTCAGCTGA AGCCATG... 57 CTATTTCTCG TGCTGAAATT TCCATTTCAT TACTGAAGAT TTGCTGTTTA TGTCGATTAT 60248 .......... .......... .......... .......... .......... .......... 57 ATTTAGTTTG ATTTGATTAA TTTGAATTGA AAAACTGTAT GTTCGATGAA ATTGTTTGTT 60188 .......... .......... .......... .......... .......... .......... 57 TGTAGTCGAG GAGAAAGACC AGGGAGCCTA AGGAAGAGAC TGTTACACTT GGACCAGCAA 60128 ||||| |||||||||| |||||||||| |||||||||| | | ||||| |||||||||| .....TCGAG GAGAAAGACC AGGGAGCCTA AGGAAGAGAC TAGTGCACTT GGACCAGCAA 112 CGAGGGAAGG TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT 60068 | | |||||| |||||||||| ||||| |||| |||||||||| ||||| | || |||||||||| CTATGGAAGG TGAATTGGTG TTCGGAGTTG CACACATTTT TGCATAGGTC AATGATACAT 172 TCATTGTGAG TGAGTTATGG TTTTTGAAAA TTTGATGTAG AAATGTAGAT TTGGCTTTGT 60008 ||||| TCATT..... .......... .......... .......... .......... .......... 177 TATTTGTGTG TTTTACTGAT TCTTAGTGTA TGTGATGAAT GCAGCACGTT ACTGATTTGT 59948 |||||| ||||||||| .......... .......... .......... .......... ....CACGTT ACTGATTTGG 193 CTGGAAGAGA AACTATGGTT CGCATTACTG GTATGCCTTA TAGAAACAAT TGTTTTATAC 59888 |||||||||| |||||||||| |||||||||| CTGGAAGAGA AACTATGGTT CGCATTACTG .......... .......... .......... 223 TTTTGACTGT ATCCTTGTAG TTACTGATTA GCTGGTAGCA GTATAATTGT TGCTTTCGAT 59828 .......... .......... .......... .......... .......... .......... 223 GCGAACATCG GTTTATGTAT AAATGTAGAT GCCTTTCTTC CAGGATGCTA ATTCTGTTGT 59768 .......... .......... .......... .......... .......... .......... 223 TGTTATCCCT ATTGGATAGA CATATATTTA CTTTTTCAAT ATAGATGAAT GTAAGTGGTA 59708 .......... .......... .......... .......... .......... .......... 223 GGAAATGTAG AGCATCTATA GTTTTAGGGA AATCAAGAAT GTAGAGCATC TATAGTTTTA 59648 .......... .......... .......... .......... .......... .......... 223 GGGAATCCTT GATATGGTTG AGGCAGCAAA TTATTGGTAT TAGAATATAA TCCTTCTAGG 59588 .......... .......... .......... .......... .......... .......... 223 AAGAAGGAAA ATGGGTATAG AGGTTCCGTC TAGTGTGGAG TTTAATCTTA GTTGTTGATG 59528 .......... .......... .......... .......... .......... .......... 223 TCGTAATGGT ATGGAGAAGC CTTTCATCTC AAATTGTTAT ACATTTTTGT TGCAGGTGGA 59468 ||||| .......... .......... .......... .......... .......... .....GTGGA 228 ATGAAGGTGA AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG 59408 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ATGAAGGTGA AGGCTGACAG AGATGAGTCT TCTCCGCATG CTGCTATGCT TGCAGCTCAG 288 GATGTGTCAC AGCGATGCAA GGTAGTGTCT TGTTTGGTTC TGATAAAGTC AATTTCCTTA 59348 |||||||||| |||||||||| | GATGTGTCAC AGCGATGCAA G......... .......... .......... .......... 309 ATTCTACTTA ATTGTTAGTT AAGCTCATCA GATATAAAGT TGGTCTAGTT CAGGTCTATA 59288 .......... .......... .......... .......... .......... .......... 309 TCAATATAAA CCATTTATGT ATGAACGAAA AAAATGAAGA CTTTTTGCCT ATATGGTACT 59228 .......... .......... .......... .......... .......... .......... 309 GTTCACAGAG ATTAATATTA GATTTTATTT CTGAAGAAAG TCACTATACT AATTTCACTG 59168 .......... .......... .......... .......... .......... .......... 309 GATATTGATG TAATGTTTAG TTCTCCTGGA TGTTGCATTC CATGTTGGTG CAGGGATTTA 59108 .......... .......... .......... .......... .......... .......... 309 TCCTTTCTTG CATTGACCAG TAATATAGGT GCCAAATTAC ATAGCTCTTC TATAAGTGTA 59048 .......... .......... .......... .......... .......... .......... 309 GAGTGTTGCT TTGTAGATAA AATTTAGCAG TTTCGAAATT TAAGACCTTT TGGATCTTCT 58988 .......... .......... .......... .......... .......... .......... 309 GATGCCTCCC TTTTCTGAAT GTGTGCTAAA GCCAATAATT CTGCCGACTA GACATTCGAA 58928 .......... .......... .......... .......... .......... .......... 309 GATCTTATAA TGTACATGAT GGCCTTTACT CCTATCTATG TTTCTTGCTA GGATGTAGAT 58868 .......... .......... .......... .......... .......... .......... 309 GGTCTATAAG ATTGTTTTTG GGTTCCATAT GCCTGATGCA TCTTACTTTT GCTTAACAAT 58808 .......... .......... .......... .......... .......... .......... 309 AAAAAATTTG TGTATAATTG ATTGGAATAA ATGCCATTCC TTCGAACATA TTGTAGAGAC 58748 .......... .......... .......... .......... .......... .......... 309 CCGTAGATTT TATGTCACCG GTTTGGATCT ATTAGGCTTT GTTATGGAAG ATTCCATTCT 58688 .......... .......... .......... .......... .......... .......... 309 GAAGTGATGT GTGCACCTTC AATTTTCGGA CACTTTTACC ACTAACAGTT GCATAATCGC 58628 .......... .......... .......... .......... .......... .......... 309 TGGTGGTGCT TGAACTATGG AAAAATGTGT GCTTCAGATT CTATTTAAGC GTCAAGGTTT 58568 .......... .......... .......... .......... .......... .......... 309 CGGAATGGTG GTCAGAATCA TTGTTAATGG GTTCCATGCT ATGCCATTTA TTCAGAGTCT 58508 .......... .......... .......... .......... .......... .......... 309 AAATATAGCT ACACTATATT TAAGACTCAA GCTCGGATAC GTCCATCTTT ATCCATCTAG 58448 .......... .......... .......... .......... .......... .......... 309 TCTGATGTCA CTAGGTCTCG TCATCACTTG TTAATCTTTT AAAATATTAT TTATGAACTT 58388 .......... .......... .......... .......... .......... .......... 309 TTGATTTACA GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA 58328 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA 358 ACAAGACCAA GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG 58268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGACCAA GACTCCTGGT CCTGGTGCCC AGTCCGCTCT TAGAGCTTTG GCTCGTTCTG 418 GCATGAAAAT TGGACGTA 58250 |||||||||| |||||||| GCATGAAAAT TGGACGTA 436 hqPGS_C09HBa0168F14.1-2-_SGN-E312500+ (60367 60311,60182 60063,59963 59918,59472 59387,58376 58250) ******************************************************************************** EST sequence 181 +strand 375 n (File: SGN-E307165+) 1 ATCTCTGAAT TTGCTCACTA TCAAGGGCAA CTGTAGCCAT GTCAAGGAGA AAGACCAGAG 61 AGCCTAAGGA AGAGACTGTC ACACTTGGAC CAGCAACAAG GGAAGGTGAA TTGGTGTTCG 121 GTGTTGCACA CATTTTTGCA TCCTTCAATG ATACATTCAT TCACGTTACT GATTAGTCTG 181 GAAGAGAAAC TATGGTTCGC ATTACTGGTG GAATGAAAGT GAAGGCTGAC AGAGATGAGT 241 CTTCTCCGTA TGCTGCTATG CTTGCAGCTC AGGATGTGTC ACAGCGATGC AAGGAACTTG 301 GAATTAATGC TCTTCACATT AAGCTCCGAG CTACAGGAGG CAACAAGACC AAGACTCCTG 361 GTCCTGGTGC CCAAT Predicted gene structure (within gDNA segment 61354 to 57667): Exon 1 60351 60311 ( 41 n); cDNA 1 41 ( 41 n); score: 0.878 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.88), Pa: 1.000 (s: 0.94) Exon 2 60182 60063 ( 120 n); cDNA 42 161 ( 120 n); score: 0.958 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 0.98), Pa: 0.995 (s: 0.98) Exon 3 59963 59918 ( 46 n); cDNA 162 207 ( 46 n); score: 0.978 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 0.98), Pa: 1.000 (s: 0.98) Exon 4 59472 59387 ( 86 n); cDNA 208 293 ( 86 n); score: 0.988 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58297 ( 80 n); cDNA 294 373 ( 80 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E307165+ 0.979 373 0.995 C PGS_C09HBa0168F14.1-2-_SGN-E307165+ (60351 60311,60182 60063,59963 59918,59472 59387,58376 58297) Alignment (genomic DNA sequence = upper lines): ATCTCTGAAT TTTCTCACTA TCAAGCTCAG CTGAAGCCAT GGTACTATTT CTCGTGCTGA 60292 |||||||||| || ||||||| ||||| || ||| |||||| | ATCTCTGAAT TTGCTCACTA TCAAGGGCAA CTGTAGCCAT G......... .......... 41 AATTTCCATT TCATTACTGA AGATTTGCTG TTTATGTCGA TTATATTTAG TTTGATTTGA 60232 .......... .......... .......... .......... .......... .......... 41 TTAATTTGAA TTGAAAAACT GTATGTTCGA TGAAATTGTT TGTTTGTAGT CGAGGAGAAA 60172 | | |||||||| .......... .......... .......... .......... .........T CAAGGAGAAA 52 GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG AAGGTGAATT 60112 |||||| ||| |||||||||| ||||||| || |||||||||| ||||| |||| |||||||||| GACCAGAGAG CCTAAGGAAG AGACTGTCAC ACTTGGACCA GCAACAAGGG AAGGTGAATT 112 GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTG TGAGTGAGTT 60052 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| GGTGTTCGGT GTTGCACACA TTTTTGCATC CTTCAATGAT ACATTCATT. .......... 161 ATGGTTTTTG AAAATTTGAT GTAGAAATGT AGATTTGGCT TTGTTATTTG TGTGTTTTAC 59992 .......... .......... .......... .......... .......... .......... 161 TGATTCTTAG TGTATGTGAT GAATGCAGCA CGTTACTGAT TTGTCTGGAA GAGAAACTAT 59932 || |||||||||| | |||||||| |||||||||| .......... .......... ........CA CGTTACTGAT TAGTCTGGAA GAGAAACTAT 193 GGTTCGCATT ACTGGTATGC CTTATAGAAA CAATTGTTTT ATACTTTTGA CTGTATCCTT 59872 |||||||||| |||| GGTTCGCATT ACTG...... .......... .......... .......... .......... 207 GTAGTTACTG ATTAGCTGGT AGCAGTATAA TTGTTGCTTT CGATGCGAAC ATCGGTTTAT 59812 .......... .......... .......... .......... .......... .......... 207 GTATAAATGT AGATGCCTTT CTTCCAGGAT GCTAATTCTG TTGTTGTTAT CCCTATTGGA 59752 .......... .......... .......... .......... .......... .......... 207 TAGACATATA TTTACTTTTT CAATATAGAT GAATGTAAGT GGTAGGAAAT GTAGAGCATC 59692 .......... .......... .......... .......... .......... .......... 207 TATAGTTTTA GGGAAATCAA GAATGTAGAG CATCTATAGT TTTAGGGAAT CCTTGATATG 59632 .......... .......... .......... .......... .......... .......... 207 GTTGAGGCAG CAAATTATTG GTATTAGAAT ATAATCCTTC TAGGAAGAAG GAAAATGGGT 59572 .......... .......... .......... .......... .......... .......... 207 ATAGAGGTTC CGTCTAGTGT GGAGTTTAAT CTTAGTTGTT GATGTCGTAA TGGTATGGAG 59512 .......... .......... .......... .......... .......... .......... 207 AAGCCTTTCA TCTCAAATTG TTATACATTT TTGTTGCAGG TGGAATGAAG GTGAAGGCTG 59452 | ||||||||| |||||||||| .......... .......... .......... .........G TGGAATGAAA GTGAAGGCTG 228 ACAGAGATGA GTCTTCTCCG TATGCTGCTA TGCTTGCAGC TCAGGATGTG TCACAGCGAT 59392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGAGATGA GTCTTCTCCG TATGCTGCTA TGCTTGCAGC TCAGGATGTG TCACAGCGAT 288 GCAAGGTAGT GTCTTGTTTG GTTCTGATAA AGTCAATTTC CTTAATTCTA CTTAATTGTT 59332 ||||| GCAAG..... .......... .......... .......... .......... .......... 293 AGTTAAGCTC ATCAGATATA AAGTTGGTCT AGTTCAGGTC TATATCAATA TAAACCATTT 59272 .......... .......... .......... .......... .......... .......... 293 ATGTATGAAC GAAAAAAATG AAGACTTTTT GCCTATATGG TACTGTTCAC AGAGATTAAT 59212 .......... .......... .......... .......... .......... .......... 293 ATTAGATTTT ATTTCTGAAG AAAGTCACTA TACTAATTTC ACTGGATATT GATGTAATGT 59152 .......... .......... .......... .......... .......... .......... 293 TTAGTTCTCC TGGATGTTGC ATTCCATGTT GGTGCAGGGA TTTATCCTTT CTTGCATTGA 59092 .......... .......... .......... .......... .......... .......... 293 CCAGTAATAT AGGTGCCAAA TTACATAGCT CTTCTATAAG TGTAGAGTGT TGCTTTGTAG 59032 .......... .......... .......... .......... .......... .......... 293 ATAAAATTTA GCAGTTTCGA AATTTAAGAC CTTTTGGATC TTCTGATGCC TCCCTTTTCT 58972 .......... .......... .......... .......... .......... .......... 293 GAATGTGTGC TAAAGCCAAT AATTCTGCCG ACTAGACATT CGAAGATCTT ATAATGTACA 58912 .......... .......... .......... .......... .......... .......... 293 TGATGGCCTT TACTCCTATC TATGTTTCTT GCTAGGATGT AGATGGTCTA TAAGATTGTT 58852 .......... .......... .......... .......... .......... .......... 293 TTTGGGTTCC ATATGCCTGA TGCATCTTAC TTTTGCTTAA CAATAAAAAA TTTGTGTATA 58792 .......... .......... .......... .......... .......... .......... 293 ATTGATTGGA ATAAATGCCA TTCCTTCGAA CATATTGTAG AGACCCGTAG ATTTTATGTC 58732 .......... .......... .......... .......... .......... .......... 293 ACCGGTTTGG ATCTATTAGG CTTTGTTATG GAAGATTCCA TTCTGAAGTG ATGTGTGCAC 58672 .......... .......... .......... .......... .......... .......... 293 CTTCAATTTT CGGACACTTT TACCACTAAC AGTTGCATAA TCGCTGGTGG TGCTTGAACT 58612 .......... .......... .......... .......... .......... .......... 293 ATGGAAAAAT GTGTGCTTCA GATTCTATTT AAGCGTCAAG GTTTCGGAAT GGTGGTCAGA 58552 .......... .......... .......... .......... .......... .......... 293 ATCATTGTTA ATGGGTTCCA TGCTATGCCA TTTATTCAGA GTCTAAATAT AGCTACACTA 58492 .......... .......... .......... .......... .......... .......... 293 TATTTAAGAC TCAAGCTCGG ATACGTCCAT CTTTATCCAT CTAGTCTGAT GTCACTAGGT 58432 .......... .......... .......... .......... .......... .......... 293 CTCGTCATCA CTTGTTAATC TTTTAAAATA TTATTTATGA ACTTTTGATT TACAGGAACT 58372 ||||| .......... .......... .......... .......... .......... .....GAACT 298 TGGAATTAAT GCTCTTCACA TTAAGCTCCG AGCTACAGGA GGCAACAAGA CCAAGACTCC 58312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATTAAT GCTCTTCACA TTAAGCTCCG AGCTACAGGA GGCAACAAGA CCAAGACTCC 358 TGGTCCTGGT GCCCA 58297 |||||||||| ||||| TGGTCCTGGT GCCCA 373 hqPGS_C09HBa0168F14.1-2-_SGN-E307165+ (60351 60311,60182 60063,59963 59918,59472 59387,58376 58297) ******************************************************************************** EST sequence 239 +strand 370 n (File: SGN-E259932+) 1 TTTTTCAAGC TTCAGCAGCA GCAGCAGCAG CACACCTGCA AATCAACCTT AGCCATGTCG 61 AGGAGAAAGA CCAGAGAGCC CAAGGAAGAG ACTGTTACCC TTGGACCAGC TACCAGGGAA 121 GGTGAATTGG TCTTTGGTGT TGCTCACATT TTCGCCTCTT TCAATGACAC ATTCATTCAT 181 GTGACTGATT TGTCTGGACG CGAAACAATG GTTCGCATTA CTGGTGGCAT GAAGGTGAAG 241 GCTGACAGAG ATGAATCTTC TCCTTATGCT GCTATGCTTG CAGCACAAGA TGAGTTCTCA 301 ACGATGCAAG GAGCTTGGAA TTAATGCCCT TCACATTAAG CTTCGGGCTA CAGGTGGGAA 361 CAAAAACAAG Predicted gene structure (within gDNA segment 61343 to 57942): Exon 1 60182 60063 ( 120 n); cDNA 58 177 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 178 223 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 224 310 ( 87 n); score: 0.878 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.83), Pa: 1.000 (s: 0.88) Exon 4 58376 58317 ( 60 n); cDNA 311 370 ( 60 n); score: 0.867 MATCH C09HBa0168F14.1-2- SGN-E259932+ 0.885 312 0.843 C PGS_C09HBa0168F14.1-2-_SGN-E259932+ (60182 60063,59963 59918,59472 59387,58376 58317) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 117 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 177 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 177 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 198 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 223 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 223 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 223 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 223 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 223 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 223 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 223 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 233 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || |||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGA 293 G-TCACAGCG ATGCAAGGTA GTGTCTTGTT TGGTTCTGAT AAAGTCAATT TCCTTAATTC 59344 | || || || ||||||| GTTCTCAACG ATGCAAG... .......... .......... .......... .......... 310 TACTTAATTG TTAGTTAAGC TCATCAGATA TAAAGTTGGT CTAGTTCAGG TCTATATCAA 59284 .......... .......... .......... .......... .......... .......... 310 TATAAACCAT TTATGTATGA ACGAAAAAAA TGAAGACTTT TTGCCTATAT GGTACTGTTC 59224 .......... .......... .......... .......... .......... .......... 310 ACAGAGATTA ATATTAGATT TTATTTCTGA AGAAAGTCAC TATACTAATT TCACTGGATA 59164 .......... .......... .......... .......... .......... .......... 310 TTGATGTAAT GTTTAGTTCT CCTGGATGTT GCATTCCATG TTGGTGCAGG GATTTATCCT 59104 .......... .......... .......... .......... .......... .......... 310 TTCTTGCATT GACCAGTAAT ATAGGTGCCA AATTACATAG CTCTTCTATA AGTGTAGAGT 59044 .......... .......... .......... .......... .......... .......... 310 GTTGCTTTGT AGATAAAATT TAGCAGTTTC GAAATTTAAG ACCTTTTGGA TCTTCTGATG 58984 .......... .......... .......... .......... .......... .......... 310 CCTCCCTTTT CTGAATGTGT GCTAAAGCCA ATAATTCTGC CGACTAGACA TTCGAAGATC 58924 .......... .......... .......... .......... .......... .......... 310 TTATAATGTA CATGATGGCC TTTACTCCTA TCTATGTTTC TTGCTAGGAT GTAGATGGTC 58864 .......... .......... .......... .......... .......... .......... 310 TATAAGATTG TTTTTGGGTT CCATATGCCT GATGCATCTT ACTTTTGCTT AACAATAAAA 58804 .......... .......... .......... .......... .......... .......... 310 AATTTGTGTA TAATTGATTG GAATAAATGC CATTCCTTCG AACATATTGT AGAGACCCGT 58744 .......... .......... .......... .......... .......... .......... 310 AGATTTTATG TCACCGGTTT GGATCTATTA GGCTTTGTTA TGGAAGATTC CATTCTGAAG 58684 .......... .......... .......... .......... .......... .......... 310 TGATGTGTGC ACCTTCAATT TTCGGACACT TTTACCACTA ACAGTTGCAT AATCGCTGGT 58624 .......... .......... .......... .......... .......... .......... 310 GGTGCTTGAA CTATGGAAAA ATGTGTGCTT CAGATTCTAT TTAAGCGTCA AGGTTTCGGA 58564 .......... .......... .......... .......... .......... .......... 310 ATGGTGGTCA GAATCATTGT TAATGGGTTC CATGCTATGC CATTTATTCA GAGTCTAAAT 58504 .......... .......... .......... .......... .......... .......... 310 ATAGCTACAC TATATTTAAG ACTCAAGCTC GGATACGTCC ATCTTTATCC ATCTAGTCTG 58444 .......... .......... .......... .......... .......... .......... 310 ATGTCACTAG GTCTCGTCAT CACTTGTTAA TCTTTTAAAA TATTATTTAT GAACTTTTGA 58384 .......... .......... .......... .......... .......... .......... 310 TTTACAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG GAGGCAACAA 58324 || |||||||||| |||| ||||| ||||||||| || ||||||| | || ||||| .......GAG CTTGGAATTA ATGCCCTTCA CATTAAGCTT CGGGCTACAG GTGGGAACAA 363 GACCAAG 58317 | |||| AAACAAG 370 hqPGS_C09HBa0168F14.1-2-_SGN-E259932+ (60182 60063,59963 59918,59472 59387,58376 58317) ******************************************************************************** EST sequence 170 +strand 382 n (File: SGN-E309460+) 1 CCATTGCAGC TAGGGTTTTT CAAGCTTCAG CAGCAGCAGC AGCAGCACAC CTGCAAATCA 61 ACCTTAGCCA TGTCGAGGAG AAAGACCAGA GAGCCCAAGG AAGAGACTGT TACCCTTGGA 121 CCAGCTACCA GGGAAGGTGA ATTGGTCTTT GGTGTTGCTC ACATTTTCGC CTCTTTCAAT 181 GACACATTCA TTCATGTGAC TGATTTGTCT GGACGCGAAA CAATGGTTCG CATTACTGGT 241 GGCATGAAGG TGAAGGCTGA CAGAGATGAA TCTTCTCCTT ATGCTGCTAT GCTTGCAGCA 301 CAAGATGTTT CTCAACGATG CAAGGAGCTT GGAATTAATG CCCTTCACAT TAAGCTTCGG 361 GCTACAGGTG GGAACAAAAC CA Predicted gene structure (within gDNA segment 61493 to 57972): Exon 1 60182 60063 ( 120 n); cDNA 73 192 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 193 238 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 239 324 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58319 ( 58 n); cDNA 325 382 ( 58 n); score: 0.879 MATCH C09HBa0168F14.1-2- SGN-E309460+ 0.898 310 0.812 C PGS_C09HBa0168F14.1-2-_SGN-E309460+ (60182 60063,59963 59918,59472 59387,58376 58319) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 132 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 192 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 192 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 213 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 238 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 238 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 238 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 238 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 238 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 238 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 238 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 248 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 308 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 324 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 324 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 324 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 324 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 324 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 324 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 324 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 324 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 324 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 324 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 324 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 324 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 324 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 324 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 324 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 324 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 324 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 378 ACCA 58319 |||| ACCA 382 hqPGS_C09HBa0168F14.1-2-_SGN-E309460+ (60182 60063,59963 59918,59472 59387,58376 58319) ******************************************************************************** EST sequence 202 +strand 305 n (File: SGN-E309012+) 1 GAGAAAGACC AGAGAGCCCA AGGAAGAGAC TGTTACCCTT GGACCACCTA CCAGGGAAGG 61 TGAATTGGTC TTTGGTGTTG CTCACATTTT CTCCTCTTTC AATGACACAT TCATTCATGT 121 GACTGATTTG TCTGGACGCG AAACAATGGT TCGCATTACT GGTGGCATGA AGGTGAAGGC 181 TGACAGAGAT GAATCTTCTC CTTATGCTGC TATGCTTGCA GCACAAGATG TTTCTCAACG 241 ATGCAAGGAG CTTGGAATTA ATGCCCTTCA CATTAAGCTT CGGGCTACAG GTGGGAACAA 301 AACCA Predicted gene structure (within gDNA segment 60948 to 57972): Exon 1 60177 60063 ( 115 n); cDNA 1 115 ( 115 n); score: 0.878 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.84), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 116 161 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 162 247 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58319 ( 58 n); cDNA 248 305 ( 58 n); score: 0.879 MATCH C09HBa0168F14.1-2- SGN-E309012+ 0.888 305 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E309012+ (60177 60063,59963 59918,59472 59387,58376 58319) Alignment (genomic DNA sequence = upper lines): GAGAAAGACC AGGGAGCCTA AGGAAGAGAC TGTTACACTT GGACCAGCAA CGAGGGAAGG 60118 |||||||||| || ||||| | |||||||||| |||||| ||| |||||| | | | |||||||| GAGAAAGACC AGAGAGCCCA AGGAAGAGAC TGTTACCCTT GGACCACCTA CCAGGGAAGG 60 TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTGTGAG 60058 ||||||||| || ||||||| | |||||||| | || ||| ||||| |||| ||||| TGAATTGGTC TTTGGTGTTG CTCACATTTT CTCCTCTTTC AATGACACAT TCATT..... 115 TGAGTTATGG TTTTTGAAAA TTTGATGTAG AAATGTAGAT TTGGCTTTGT TATTTGTGTG 59998 .......... .......... .......... .......... .......... .......... 115 TTTTACTGAT TCTTAGTGTA TGTGATGAAT GCAGCACGTT ACTGATTTGT CTGGAAGAGA 59938 || || |||||||||| ||||| | || .......... .......... .......... ....CATGTG ACTGATTTGT CTGGACGCGA 141 AACTATGGTT CGCATTACTG GTATGCCTTA TAGAAACAAT TGTTTTATAC TTTTGACTGT 59878 ||| |||||| |||||||||| AACAATGGTT CGCATTACTG .......... .......... .......... .......... 161 ATCCTTGTAG TTACTGATTA GCTGGTAGCA GTATAATTGT TGCTTTCGAT GCGAACATCG 59818 .......... .......... .......... .......... .......... .......... 161 GTTTATGTAT AAATGTAGAT GCCTTTCTTC CAGGATGCTA ATTCTGTTGT TGTTATCCCT 59758 .......... .......... .......... .......... .......... .......... 161 ATTGGATAGA CATATATTTA CTTTTTCAAT ATAGATGAAT GTAAGTGGTA GGAAATGTAG 59698 .......... .......... .......... .......... .......... .......... 161 AGCATCTATA GTTTTAGGGA AATCAAGAAT GTAGAGCATC TATAGTTTTA GGGAATCCTT 59638 .......... .......... .......... .......... .......... .......... 161 GATATGGTTG AGGCAGCAAA TTATTGGTAT TAGAATATAA TCCTTCTAGG AAGAAGGAAA 59578 .......... .......... .......... .......... .......... .......... 161 ATGGGTATAG AGGTTCCGTC TAGTGTGGAG TTTAATCTTA GTTGTTGATG TCGTAATGGT 59518 .......... .......... .......... .......... .......... .......... 161 ATGGAGAAGC CTTTCATCTC AAATTGTTAT ACATTTTTGT TGCAGGTGGA ATGAAGGTGA 59458 |||| |||||||||| .......... .......... .......... .......... .....GTGGC ATGAAGGTGA 176 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 59398 |||||||||| |||||| ||| ||||| |||| |||||||||| |||||| || ||||| || | AGGCTGACAG AGATGAATCT TCTCCTTATG CTGCTATGCT TGCAGCACAA GATGTTTCTC 236 AGCGATGCAA GGTAGTGTCT TGTTTGGTTC TGATAAAGTC AATTTCCTTA ATTCTACTTA 59338 | |||||||| | AACGATGCAA G......... .......... .......... .......... .......... 247 ATTGTTAGTT AAGCTCATCA GATATAAAGT TGGTCTAGTT CAGGTCTATA TCAATATAAA 59278 .......... .......... .......... .......... .......... .......... 247 CCATTTATGT ATGAACGAAA AAAATGAAGA CTTTTTGCCT ATATGGTACT GTTCACAGAG 59218 .......... .......... .......... .......... .......... .......... 247 ATTAATATTA GATTTTATTT CTGAAGAAAG TCACTATACT AATTTCACTG GATATTGATG 59158 .......... .......... .......... .......... .......... .......... 247 TAATGTTTAG TTCTCCTGGA TGTTGCATTC CATGTTGGTG CAGGGATTTA TCCTTTCTTG 59098 .......... .......... .......... .......... .......... .......... 247 CATTGACCAG TAATATAGGT GCCAAATTAC ATAGCTCTTC TATAAGTGTA GAGTGTTGCT 59038 .......... .......... .......... .......... .......... .......... 247 TTGTAGATAA AATTTAGCAG TTTCGAAATT TAAGACCTTT TGGATCTTCT GATGCCTCCC 58978 .......... .......... .......... .......... .......... .......... 247 TTTTCTGAAT GTGTGCTAAA GCCAATAATT CTGCCGACTA GACATTCGAA GATCTTATAA 58918 .......... .......... .......... .......... .......... .......... 247 TGTACATGAT GGCCTTTACT CCTATCTATG TTTCTTGCTA GGATGTAGAT GGTCTATAAG 58858 .......... .......... .......... .......... .......... .......... 247 ATTGTTTTTG GGTTCCATAT GCCTGATGCA TCTTACTTTT GCTTAACAAT AAAAAATTTG 58798 .......... .......... .......... .......... .......... .......... 247 TGTATAATTG ATTGGAATAA ATGCCATTCC TTCGAACATA TTGTAGAGAC CCGTAGATTT 58738 .......... .......... .......... .......... .......... .......... 247 TATGTCACCG GTTTGGATCT ATTAGGCTTT GTTATGGAAG ATTCCATTCT GAAGTGATGT 58678 .......... .......... .......... .......... .......... .......... 247 GTGCACCTTC AATTTTCGGA CACTTTTACC ACTAACAGTT GCATAATCGC TGGTGGTGCT 58618 .......... .......... .......... .......... .......... .......... 247 TGAACTATGG AAAAATGTGT GCTTCAGATT CTATTTAAGC GTCAAGGTTT CGGAATGGTG 58558 .......... .......... .......... .......... .......... .......... 247 GTCAGAATCA TTGTTAATGG GTTCCATGCT ATGCCATTTA TTCAGAGTCT AAATATAGCT 58498 .......... .......... .......... .......... .......... .......... 247 ACACTATATT TAAGACTCAA GCTCGGATAC GTCCATCTTT ATCCATCTAG TCTGATGTCA 58438 .......... .......... .......... .......... .......... .......... 247 CTAGGTCTCG TCATCACTTG TTAATCTTTT AAAATATTAT TTATGAACTT TTGATTTACA 58378 .......... .......... .......... .......... .......... .......... 247 GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGGAGGCA ACAAGACCA 58319 || |||||| |||||||| | |||||||||| ||| || ||| ||||| || | |||| |||| .GAGCTTGGA ATTAATGCCC TTCACATTAA GCTTCGGGCT ACAGGTGGGA ACAAAACCA 305 hqPGS_C09HBa0168F14.1-2-_SGN-E309012+ (60177 60063,59963 59918,59472 59387,58376 58319) ******************************************************************************** EST sequence 115 +strand 364 n (File: SGN-E282602+) 1 TTTTCAAGCT TCAGCAGCAG CAGCAGCAGC ACACCTGCAA ATCAACCTTA GCCATGTCGA 61 GGAGAAAGAC CAGAGAGCCC AAGGAAGAGA CTGTTACCCT TGGACCAGCT ACCAGGGAAG 121 GTGAATTGGT CTTTGGTGTT GCTCACATTT TCGCCTCTTT CAATGACACA TTCATTCATG 181 TGACTGATTT GTCTGGACGC GAAACAATGG TTCGCATTAC TGGTGGCATG AAGGTGAAGG 241 CTGACAGAGA TGAATCTTCT CCTTATGCTG CTATGCTTGC AGCACAAGAT GTTTCTCAAC 301 GATGCAAGGA GCTTGGAATT AATGCCCTTC ACATTAAGCT TCGGGCTACA GGTGGGAACA 361 AAAC Predicted gene structure (within gDNA segment 61333 to 57992): Exon 1 60182 60063 ( 120 n); cDNA 57 176 ( 120 n); score: 0.900 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 0.86), Pa: 0.995 (s: 0.89) Exon 2 59963 59918 ( 46 n); cDNA 177 222 ( 46 n); score: 0.891 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 0.89), Pa: 1.000 (s: 0.94) Exon 3 59472 59387 ( 86 n); cDNA 223 308 ( 86 n); score: 0.907 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 0.88), Pa: 1.000 (s: 0.88) Exon 4 58376 58321 ( 56 n); cDNA 309 364 ( 56 n); score: 0.875 MATCH C09HBa0168F14.1-2- SGN-E282602+ 0.897 308 0.846 C PGS_C09HBa0168F14.1-2-_SGN-E282602+ (60182 60063,59963 59918,59472 59387,58376 58321) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 |||||||||| ||||||| || ||| |||||| |||||||||| | |||||||| ||| || ||| TCGAGGAGAA AGACCAGAGA GCCCAAGGAA GAGACTGTTA CCCTTGGACC AGCTACCAGG 116 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||| || || |||||| ||| ||||| || | | |||||||| ||||||||| GAAGGTGAAT TGGTCTTTGG TGTTGCTCAC ATTTTCGCCT CTTTCAATGA CACATTCATT 176 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 176 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | | || ||||| |||||||||| .......... .......... .......... .........C ATGTGACTGA TTTGTCTGGA 197 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||||| | |||||||||| ||||| CGCGAAACAA TGGTTCGCAT TACTG..... .......... .......... .......... 222 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 222 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 222 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 222 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 222 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 222 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 222 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||| ||||| .......... .......... .......... .......... .......... GTGGCATGAA 232 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| | |||||||| ||||||||| |||||||||| | || ||||| GGTGAAGGCT GACAGAGATG AATCTTCTCC TTATGCTGCT ATGCTTGCAG CACAAGATGT 292 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 || || ||| |||||| TTCTCAACGA TGCAAG.... .......... .......... .......... .......... 308 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 308 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 308 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 308 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 308 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 308 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 308 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 308 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 308 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 308 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 308 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 308 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 308 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 308 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 308 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 308 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 308 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGCTACAGG AGGCAACAAG 58323 || | |||||||||| ||| |||||| |||||||| | | |||||||| || ||||| ......GAGC TTGGAATTAA TGCCCTTCAC ATTAAGCTTC GGGCTACAGG TGGGAACAAA 362 AC 58321 || AC 364 hqPGS_C09HBa0168F14.1-2-_SGN-E282602+ (60182 60063,59963 59918,59472 59387,58376 58321) ******************************************************************************** EST sequence 178 +strand 355 n (File: SGN-E336598+) 1 TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 61 TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTNTAC ACTTGGACCA GCAACGAGGG 121 AAGGTGAATT GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC 181 ACGTTACTGA TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA 241 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 301 AGCGATGCAA GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGCT ACAGG Predicted gene structure (within gDNA segment 60970 to 57723): Exon 1 60370 60311 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 0.96) Exon 2 60182 60063 ( 120 n); cDNA 61 179 ( 119 n); score: 0.983 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 180 225 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 226 311 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58333 ( 44 n); cDNA 312 355 ( 44 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E336598+ 0.992 356 1.003 C PGS_C09HBa0168F14.1-2-_SGN-E336598+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58333) Alignment (genomic DNA sequence = upper lines): TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCAAG CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG 60 GTACTATTTC TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT 60251 .......... .......... .......... .......... .......... .......... 60 TATATTTAGT TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT 60191 .......... .......... .......... .......... .......... .......... 60 GTTTGTAGTC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG 60131 || |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| ........TC GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACT-NTACA CTTGGACCAG 111 CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 60071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGAGGGA AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA 171 CATTCATTGT GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT 60011 |||||||| CATTCATT.. .......... .......... .......... .......... .......... 179 TGTTATTTGT GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT 59951 ||| |||||||||| .......... .......... .......... .......... .......CAC GTTACTGATT 192 TGTCTGGAAG AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA 59891 |||||||||| |||||||||| |||||||||| ||| TGTCTGGAAG AGAAACTATG GTTCGCATTA CTG....... .......... .......... 225 TACTTTTGAC TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC 59831 .......... .......... .......... .......... .......... .......... 225 GATGCGAACA TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT 59771 .......... .......... .......... .......... .......... .......... 225 TGTTGTTATC CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG 59711 .......... .......... .......... .......... .......... .......... 225 GTAGGAAATG TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT 59651 .......... .......... .......... .......... .......... .......... 225 TTAGGGAATC CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT 59591 .......... .......... .......... .......... .......... .......... 225 AGGAAGAAGG AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG 59531 .......... .......... .......... .......... .......... .......... 225 ATGTCGTAAT GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT 59471 || .......... .......... .......... .......... .......... ........GT 227 GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 59411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATGAAGG TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT 287 CAGGATGTGT CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC 59351 |||||||||| |||||||||| |||| CAGGATGTGT CACAGCGATG CAAG...... .......... .......... .......... 311 TTAATTCTAC TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT 59291 .......... .......... .......... .......... .......... .......... 311 ATATCAATAT AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT 59231 .......... .......... .......... .......... .......... .......... 311 ACTGTTCACA GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA 59171 .......... .......... .......... .......... .......... .......... 311 CTGGATATTG ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT 59111 .......... .......... .......... .......... .......... .......... 311 TTATCCTTTC TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT 59051 .......... .......... .......... .......... .......... .......... 311 GTAGAGTGTT GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT 58991 .......... .......... .......... .......... .......... .......... 311 TCTGATGCCT CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC 58931 .......... .......... .......... .......... .......... .......... 311 GAAGATCTTA TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA 58871 .......... .......... .......... .......... .......... .......... 311 GATGGTCTAT AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC 58811 .......... .......... .......... .......... .......... .......... 311 AATAAAAAAT TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA 58751 .......... .......... .......... .......... .......... .......... 311 GACCCGTAGA TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT 58691 .......... .......... .......... .......... .......... .......... 311 TCTGAAGTGA TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT 58631 .......... .......... .......... .......... .......... .......... 311 CGCTGGTGGT GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG 58571 .......... .......... .......... .......... .......... .......... 311 TTTCGGAATG GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG 58511 .......... .......... .......... .......... .......... .......... 311 TCTAAATATA GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC 58451 .......... .......... .......... .......... .......... .......... 311 TAGTCTGATG TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA 58391 .......... .......... .......... .......... .......... .......... 311 CTTTTGATTT ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGG 58333 |||||| |||||||||| |||||||||| |||||||||| |||||||| .......... ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTACAGG 355 hqPGS_C09HBa0168F14.1-2-_SGN-E336598+ (60370 60311,60182 60063,59963 59918,59472 59387,58376 58333) ******************************************************************************** EST sequence 138 +strand 357 n (File: SGN-E327157+) 1 CTCGTGCCGC AAGCTGCTGA GTATCTCTGA ATTTTCTCAC TATCAAGCTC AGCTGAAGCC 61 ATGTCGAGGA GAAAGACCAG GGAGCCTAAG GAAGAGACTG TTACACTTGG ACCAGCAACG 121 AGGGAAGGTG AATTGGTGTT CGGTGTTGCA CACATTTTTG CATCGTTCAA TGATACATTC 181 ATTCACGTTA CTGATTTGTC TGGAAGAGAA ACTATGGTTC GCATTACTGG TGGAATGAAG 241 GTGAAGGCTG ACAGAGATGA GTCTTCTCCG TATGCTGCTA TGCTTGCAGC TCAGGATGTG 301 TCACAGCGAT GCAAGGGACT TGGAATTAAT GCTCTTCACA TTAAGCTCCG AGCTACA Predicted gene structure (within gDNA segment 61054 to 57725): Exon 1 60364 60311 ( 54 n); cDNA 10 63 ( 54 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 64 183 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 184 229 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 230 315 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 0.98) Exon 5 58376 58335 ( 42 n); cDNA 316 357 ( 42 n); score: 0.976 MATCH C09HBa0168F14.1-2- SGN-E327157+ 1.000 348 0.975 C PGS_C09HBa0168F14.1-2-_SGN-E327157+ (60364 60311,60182 60063,59963 59918,59472 59387,58376 58335) Alignment (genomic DNA sequence = upper lines): CAAGCTGCTG AGTATCTCTG AATTTTCTCA CTATCAAGCT CAGCTGAAGC CATGGTACTA 60305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CAAGCTGCTG AGTATCTCTG AATTTTCTCA CTATCAAGCT CAGCTGAAGC CATG...... 63 TTTCTCGTGC TGAAATTTCC ATTTCATTAC TGAAGATTTG CTGTTTATGT CGATTATATT 60245 .......... .......... .......... .......... .......... .......... 63 TAGTTTGATT TGATTAATTT GAATTGAAAA ACTGTATGTT CGATGAAATT GTTTGTTTGT 60185 .......... .......... .......... .......... .......... .......... 63 AGTCGAGGAG AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA 60125 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TCGAGGAG AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA 121 GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT GATACATTCA 60065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT GATACATTCA 181 TTGTGAGTGA GTTATGGTTT TTGAAAATTT GATGTAGAAA TGTAGATTTG GCTTTGTTAT 60005 || TT........ .......... .......... .......... .......... .......... 183 TTGTGTGTTT TACTGATTCT TAGTGTATGT GATGAATGCA GCACGTTACT GATTTGTCTG 59945 ||||||||| |||||||||| .......... .......... .......... .......... .CACGTTACT GATTTGTCTG 202 GAAGAGAAAC TATGGTTCGC ATTACTGGTA TGCCTTATAG AAACAATTGT TTTATACTTT 59885 |||||||||| |||||||||| ||||||| GAAGAGAAAC TATGGTTCGC ATTACTG... .......... .......... .......... 229 TGACTGTATC CTTGTAGTTA CTGATTAGCT GGTAGCAGTA TAATTGTTGC TTTCGATGCG 59825 .......... .......... .......... .......... .......... .......... 229 AACATCGGTT TATGTATAAA TGTAGATGCC TTTCTTCCAG GATGCTAATT CTGTTGTTGT 59765 .......... .......... .......... .......... .......... .......... 229 TATCCCTATT GGATAGACAT ATATTTACTT TTTCAATATA GATGAATGTA AGTGGTAGGA 59705 .......... .......... .......... .......... .......... .......... 229 AATGTAGAGC ATCTATAGTT TTAGGGAAAT CAAGAATGTA GAGCATCTAT AGTTTTAGGG 59645 .......... .......... .......... .......... .......... .......... 229 AATCCTTGAT ATGGTTGAGG CAGCAAATTA TTGGTATTAG AATATAATCC TTCTAGGAAG 59585 .......... .......... .......... .......... .......... .......... 229 AAGGAAAATG GGTATAGAGG TTCCGTCTAG TGTGGAGTTT AATCTTAGTT GTTGATGTCG 59525 .......... .......... .......... .......... .......... .......... 229 TAATGGTATG GAGAAGCCTT TCATCTCAAA TTGTTATACA TTTTTGTTGC AGGTGGAATG 59465 |||||||| .......... .......... .......... .......... .......... ..GTGGAATG 237 AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT 59405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT 297 GTGTCACAGC GATGCAAGGT AGTGTCTTGT TTGGTTCTGA TAAAGTCAAT TTCCTTAATT 59345 |||||||||| |||||||| GTGTCACAGC GATGCAAG.. .......... .......... .......... .......... 315 CTACTTAATT GTTAGTTAAG CTCATCAGAT ATAAAGTTGG TCTAGTTCAG GTCTATATCA 59285 .......... .......... .......... .......... .......... .......... 315 ATATAAACCA TTTATGTATG AACGAAAAAA ATGAAGACTT TTTGCCTATA TGGTACTGTT 59225 .......... .......... .......... .......... .......... .......... 315 CACAGAGATT AATATTAGAT TTTATTTCTG AAGAAAGTCA CTATACTAAT TTCACTGGAT 59165 .......... .......... .......... .......... .......... .......... 315 ATTGATGTAA TGTTTAGTTC TCCTGGATGT TGCATTCCAT GTTGGTGCAG GGATTTATCC 59105 .......... .......... .......... .......... .......... .......... 315 TTTCTTGCAT TGACCAGTAA TATAGGTGCC AAATTACATA GCTCTTCTAT AAGTGTAGAG 59045 .......... .......... .......... .......... .......... .......... 315 TGTTGCTTTG TAGATAAAAT TTAGCAGTTT CGAAATTTAA GACCTTTTGG ATCTTCTGAT 58985 .......... .......... .......... .......... .......... .......... 315 GCCTCCCTTT TCTGAATGTG TGCTAAAGCC AATAATTCTG CCGACTAGAC ATTCGAAGAT 58925 .......... .......... .......... .......... .......... .......... 315 CTTATAATGT ACATGATGGC CTTTACTCCT ATCTATGTTT CTTGCTAGGA TGTAGATGGT 58865 .......... .......... .......... .......... .......... .......... 315 CTATAAGATT GTTTTTGGGT TCCATATGCC TGATGCATCT TACTTTTGCT TAACAATAAA 58805 .......... .......... .......... .......... .......... .......... 315 AAATTTGTGT ATAATTGATT GGAATAAATG CCATTCCTTC GAACATATTG TAGAGACCCG 58745 .......... .......... .......... .......... .......... .......... 315 TAGATTTTAT GTCACCGGTT TGGATCTATT AGGCTTTGTT ATGGAAGATT CCATTCTGAA 58685 .......... .......... .......... .......... .......... .......... 315 GTGATGTGTG CACCTTCAAT TTTCGGACAC TTTTACCACT AACAGTTGCA TAATCGCTGG 58625 .......... .......... .......... .......... .......... .......... 315 TGGTGCTTGA ACTATGGAAA AATGTGTGCT TCAGATTCTA TTTAAGCGTC AAGGTTTCGG 58565 .......... .......... .......... .......... .......... .......... 315 AATGGTGGTC AGAATCATTG TTAATGGGTT CCATGCTATG CCATTTATTC AGAGTCTAAA 58505 .......... .......... .......... .......... .......... .......... 315 TATAGCTACA CTATATTTAA GACTCAAGCT CGGATACGTC CATCTTTATC CATCTAGTCT 58445 .......... .......... .......... .......... .......... .......... 315 GATGTCACTA GGTCTCGTCA TCACTTGTTA ATCTTTTAAA ATATTATTTA TGAACTTTTG 58385 .......... .......... .......... .......... .......... .......... 315 ATTTACAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA 58335 | |||||||||| |||||||||| |||||||||| |||||||||| ........GG ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA 357 hqPGS_C09HBa0168F14.1-2-_SGN-E327157+ (60364 60311,60182 60063,59963 59918,59472 59387,58376 58335) ******************************************************************************** EST sequence 219 +strand 342 n (File: SGN-E289778+) 1 CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG TCGAGGAGAA 61 AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG GAAGGTGAAT 121 TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT CACGTTACTG 181 ATTTGTCTGG AAGAGAAACT ATGGTTCGCA TTACTGGTGG AATGAAGGTG AAGGCTGACA 241 GAGATGAGTC TTCTCCGTAT GCTGCTATGC TTGCAGCTCA GGATGTGTCA CAGCGATGCA 301 AGGAACTTGG AATTAATGCT CTTCACATTA AGCTCCGAGC TA Predicted gene structure (within gDNA segment 60960 to 57727): Exon 1 60360 60311 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 51 170 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 171 216 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 217 302 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 5 58376 58337 ( 40 n); cDNA 303 342 ( 40 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E289778+ 1.000 342 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E289778+ (60360 60311,60182 60063,59963 59918,59472 59387,58376 58337) Alignment (genomic DNA sequence = upper lines): CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG GTACTATTTC 60301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCTGAGTA TCTCTGAATT TTCTCACTAT CAAGCTCAGC TGAAGCCATG .......... 50 TCGTGCTGAA ATTTCCATTT CATTACTGAA GATTTGCTGT TTATGTCGAT TATATTTAGT 60241 .......... .......... .......... .......... .......... .......... 50 TTGATTTGAT TAATTTGAAT TGAAAAACTG TATGTTCGAT GAAATTGTTT GTTTGTAGTC 60181 || .......... .......... .......... .......... .......... ........TC 52 GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG CAACGAGGGA 60121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAGAAAG ACCAGGGAGC CTAAGGAAGA GACTGTTACA CTTGGACCAG CAACGAGGGA 112 AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA CATTCATTGT 60061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AGGTGAATTG GTGTTCGGTG TTGCACACAT TTTTGCATCG TTCAATGATA CATTCATT.. 170 GAGTGAGTTA TGGTTTTTGA AAATTTGATG TAGAAATGTA GATTTGGCTT TGTTATTTGT 60001 .......... .......... .......... .......... .......... .......... 170 GTGTTTTACT GATTCTTAGT GTATGTGATG AATGCAGCAC GTTACTGATT TGTCTGGAAG 59941 ||| |||||||||| |||||||||| .......... .......... .......... .......CAC GTTACTGATT TGTCTGGAAG 193 AGAAACTATG GTTCGCATTA CTGGTATGCC TTATAGAAAC AATTGTTTTA TACTTTTGAC 59881 |||||||||| |||||||||| ||| AGAAACTATG GTTCGCATTA CTG....... .......... .......... .......... 216 TGTATCCTTG TAGTTACTGA TTAGCTGGTA GCAGTATAAT TGTTGCTTTC GATGCGAACA 59821 .......... .......... .......... .......... .......... .......... 216 TCGGTTTATG TATAAATGTA GATGCCTTTC TTCCAGGATG CTAATTCTGT TGTTGTTATC 59761 .......... .......... .......... .......... .......... .......... 216 CCTATTGGAT AGACATATAT TTACTTTTTC AATATAGATG AATGTAAGTG GTAGGAAATG 59701 .......... .......... .......... .......... .......... .......... 216 TAGAGCATCT ATAGTTTTAG GGAAATCAAG AATGTAGAGC ATCTATAGTT TTAGGGAATC 59641 .......... .......... .......... .......... .......... .......... 216 CTTGATATGG TTGAGGCAGC AAATTATTGG TATTAGAATA TAATCCTTCT AGGAAGAAGG 59581 .......... .......... .......... .......... .......... .......... 216 AAAATGGGTA TAGAGGTTCC GTCTAGTGTG GAGTTTAATC TTAGTTGTTG ATGTCGTAAT 59521 .......... .......... .......... .......... .......... .......... 216 GGTATGGAGA AGCCTTTCAT CTCAAATTGT TATACATTTT TGTTGCAGGT GGAATGAAGG 59461 || |||||||||| .......... .......... .......... .......... ........GT GGAATGAAGG 228 TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT CAGGATGTGT 59401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGGCTGA CAGAGATGAG TCTTCTCCGT ATGCTGCTAT GCTTGCAGCT CAGGATGTGT 288 CACAGCGATG CAAGGTAGTG TCTTGTTTGG TTCTGATAAA GTCAATTTCC TTAATTCTAC 59341 |||||||||| |||| CACAGCGATG CAAG...... .......... .......... .......... .......... 302 TTAATTGTTA GTTAAGCTCA TCAGATATAA AGTTGGTCTA GTTCAGGTCT ATATCAATAT 59281 .......... .......... .......... .......... .......... .......... 302 AAACCATTTA TGTATGAACG AAAAAAATGA AGACTTTTTG CCTATATGGT ACTGTTCACA 59221 .......... .......... .......... .......... .......... .......... 302 GAGATTAATA TTAGATTTTA TTTCTGAAGA AAGTCACTAT ACTAATTTCA CTGGATATTG 59161 .......... .......... .......... .......... .......... .......... 302 ATGTAATGTT TAGTTCTCCT GGATGTTGCA TTCCATGTTG GTGCAGGGAT TTATCCTTTC 59101 .......... .......... .......... .......... .......... .......... 302 TTGCATTGAC CAGTAATATA GGTGCCAAAT TACATAGCTC TTCTATAAGT GTAGAGTGTT 59041 .......... .......... .......... .......... .......... .......... 302 GCTTTGTAGA TAAAATTTAG CAGTTTCGAA ATTTAAGACC TTTTGGATCT TCTGATGCCT 58981 .......... .......... .......... .......... .......... .......... 302 CCCTTTTCTG AATGTGTGCT AAAGCCAATA ATTCTGCCGA CTAGACATTC GAAGATCTTA 58921 .......... .......... .......... .......... .......... .......... 302 TAATGTACAT GATGGCCTTT ACTCCTATCT ATGTTTCTTG CTAGGATGTA GATGGTCTAT 58861 .......... .......... .......... .......... .......... .......... 302 AAGATTGTTT TTGGGTTCCA TATGCCTGAT GCATCTTACT TTTGCTTAAC AATAAAAAAT 58801 .......... .......... .......... .......... .......... .......... 302 TTGTGTATAA TTGATTGGAA TAAATGCCAT TCCTTCGAAC ATATTGTAGA GACCCGTAGA 58741 .......... .......... .......... .......... .......... .......... 302 TTTTATGTCA CCGGTTTGGA TCTATTAGGC TTTGTTATGG AAGATTCCAT TCTGAAGTGA 58681 .......... .......... .......... .......... .......... .......... 302 TGTGTGCACC TTCAATTTTC GGACACTTTT ACCACTAACA GTTGCATAAT CGCTGGTGGT 58621 .......... .......... .......... .......... .......... .......... 302 GCTTGAACTA TGGAAAAATG TGTGCTTCAG ATTCTATTTA AGCGTCAAGG TTTCGGAATG 58561 .......... .......... .......... .......... .......... .......... 302 GTGGTCAGAA TCATTGTTAA TGGGTTCCAT GCTATGCCAT TTATTCAGAG TCTAAATATA 58501 .......... .......... .......... .......... .......... .......... 302 GCTACACTAT ATTTAAGACT CAAGCTCGGA TACGTCCATC TTTATCCATC TAGTCTGATG 58441 .......... .......... .......... .......... .......... .......... 302 TCACTAGGTC TCGTCATCAC TTGTTAATCT TTTAAAATAT TATTTATGAA CTTTTGATTT 58381 .......... .......... .......... .......... .......... .......... 302 ACAGGAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTA 58337 |||||| |||||||||| |||||||||| |||||||||| |||| ....GAACTT GGAATTAATG CTCTTCACAT TAAGCTCCGA GCTA 342 hqPGS_C09HBa0168F14.1-2-_SGN-E289778+ (60360 60311,60182 60063,59963 59918,59472 59387,58376 58337) ******************************************************************************** EST sequence 192 +strand 349 n (File: SGN-E288856+) 1 AAACCCTAGC TGCATACCTT ATACCTACAA TCATGGCGGA AAGAGGAGGT GAAGCCATGT 61 CTAGGAGAAA GACCAGGGAG CCTAAGGAAG AGACTGTTAC ACTTGGACCA GCAACGAGGG 121 AAGGTGAATT GGTGTTCGGT GTTGCACACA TTTTTGCATC GTTCAATGAT ACATTCATTC 181 ACGTTACTGA TTTGTCTGGA AGAGAAACTA TGGTTCGCAT TACTGGTGGA ATGAAGGTGA 241 AGGCTGACAG AGATGAGTCT TCTCCGTATG CTGCTATGCT TGCAGCTCAG GATGTGTCAC 301 AGCGATGCAA GGAACTTGGA ATTAATGCTC TTCACATTAA GCTCCGAGC Predicted gene structure (within gDNA segment 61399 to 57729): Exon 1 60182 60063 ( 120 n); cDNA 60 179 ( 120 n); score: 0.992 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 59963 59918 ( 46 n); cDNA 180 225 ( 46 n); score: 1.000 Intron 2 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 59472 59387 ( 86 n); cDNA 226 311 ( 86 n); score: 1.000 Intron 3 59386 58377 (1010 n); Pd: 0.989 (s: 1.00), Pa: 1.000 (s: 0) Exon 4 58376 58339 ( 38 n); cDNA 312 349 ( 38 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E288856+ 0.995 290 0.831 C PGS_C09HBa0168F14.1-2-_SGN-E288856+ (60182 60063,59963 59918,59472 59387,58376 58339) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 119 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 179 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 179 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | |||||||||| |||||||||| .......... .......... .......... .........C ACGTTACTGA TTTGTCTGGA 200 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 |||||||||| |||||||||| ||||| AGAGAAACTA TGGTTCGCAT TACTG..... .......... .......... .......... 225 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 225 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 225 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 225 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 225 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 225 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 225 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 |||||||||| .......... .......... .......... .......... .......... GTGGAATGAA 235 GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 59403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAAGGCT GACAGAGATG AGTCTTCTCC GTATGCTGCT ATGCTTGCAG CTCAGGATGT 295 GTCACAGCGA TGCAAGGTAG TGTCTTGTTT GGTTCTGATA AAGTCAATTT CCTTAATTCT 59343 |||||||||| |||||| GTCACAGCGA TGCAAG.... .......... .......... .......... .......... 311 ACTTAATTGT TAGTTAAGCT CATCAGATAT AAAGTTGGTC TAGTTCAGGT CTATATCAAT 59283 .......... .......... .......... .......... .......... .......... 311 ATAAACCATT TATGTATGAA CGAAAAAAAT GAAGACTTTT TGCCTATATG GTACTGTTCA 59223 .......... .......... .......... .......... .......... .......... 311 CAGAGATTAA TATTAGATTT TATTTCTGAA GAAAGTCACT ATACTAATTT CACTGGATAT 59163 .......... .......... .......... .......... .......... .......... 311 TGATGTAATG TTTAGTTCTC CTGGATGTTG CATTCCATGT TGGTGCAGGG ATTTATCCTT 59103 .......... .......... .......... .......... .......... .......... 311 TCTTGCATTG ACCAGTAATA TAGGTGCCAA ATTACATAGC TCTTCTATAA GTGTAGAGTG 59043 .......... .......... .......... .......... .......... .......... 311 TTGCTTTGTA GATAAAATTT AGCAGTTTCG AAATTTAAGA CCTTTTGGAT CTTCTGATGC 58983 .......... .......... .......... .......... .......... .......... 311 CTCCCTTTTC TGAATGTGTG CTAAAGCCAA TAATTCTGCC GACTAGACAT TCGAAGATCT 58923 .......... .......... .......... .......... .......... .......... 311 TATAATGTAC ATGATGGCCT TTACTCCTAT CTATGTTTCT TGCTAGGATG TAGATGGTCT 58863 .......... .......... .......... .......... .......... .......... 311 ATAAGATTGT TTTTGGGTTC CATATGCCTG ATGCATCTTA CTTTTGCTTA ACAATAAAAA 58803 .......... .......... .......... .......... .......... .......... 311 ATTTGTGTAT AATTGATTGG AATAAATGCC ATTCCTTCGA ACATATTGTA GAGACCCGTA 58743 .......... .......... .......... .......... .......... .......... 311 GATTTTATGT CACCGGTTTG GATCTATTAG GCTTTGTTAT GGAAGATTCC ATTCTGAAGT 58683 .......... .......... .......... .......... .......... .......... 311 GATGTGTGCA CCTTCAATTT TCGGACACTT TTACCACTAA CAGTTGCATA ATCGCTGGTG 58623 .......... .......... .......... .......... .......... .......... 311 GTGCTTGAAC TATGGAAAAA TGTGTGCTTC AGATTCTATT TAAGCGTCAA GGTTTCGGAA 58563 .......... .......... .......... .......... .......... .......... 311 TGGTGGTCAG AATCATTGTT AATGGGTTCC ATGCTATGCC ATTTATTCAG AGTCTAAATA 58503 .......... .......... .......... .......... .......... .......... 311 TAGCTACACT ATATTTAAGA CTCAAGCTCG GATACGTCCA TCTTTATCCA TCTAGTCTGA 58443 .......... .......... .......... .......... .......... .......... 311 TGTCACTAGG TCTCGTCATC ACTTGTTAAT CTTTTAAAAT ATTATTTATG AACTTTTGAT 58383 .......... .......... .......... .......... .......... .......... 311 TTACAGGAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGC 58339 |||| |||||||||| |||||||||| |||||||||| |||| ......GAAC TTGGAATTAA TGCTCTTCAC ATTAAGCTCC GAGC 349 hqPGS_C09HBa0168F14.1-2-_SGN-E288856+ (60182 60063,59963 59918,59472 59387,58376 58339) ******************************************************************************** EST sequence 106 -strand 288 n (File: SGN-E216159-) 1 GGCACGAGGG TAGAAGGGGA AGGAGGCTGT GAAGACTCTT TCTCTTTTCT GCAGCATGTT 61 GCAAATTGGA GGAAAATATT GTTGTCGAAA AATGCAGCTT TCGATATCTA TTTACATTTG 121 ATTTCTGAAC ACTCTGTAGT TGAGCACTTT TGGTTTCGAA ACCACCTTCA TTTTGAGTTT 181 GCCAGCTTTT CGAGATAGTT AAGTTCTCTT AAATTTGGTT TATGCAGGCT AATTGTTGGA 241 TAAATTTATA CTCTTTTTAT CTTCAAAAAA AAAAAAAAAA CTCGACTC Predicted gene structure (within gDNA segment 58765 to 56989): Exon 1 58075 57819 ( 257 n); cDNA 9 265 ( 257 n); score: 1.000 PPA cDNA 266 281 MATCH C09HBa0168F14.1-2- SGN-E216159- 1.000 257 0.892 C PGS_C09HBa0168F14.1-2-_SGN-E216159- (58075 57819) Alignment (genomic DNA sequence = upper lines): GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG 58016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG 68 GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA 57956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA 128 ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT 57896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT 188 TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA 57836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA 248 TACTCTTTTT ATCTTCA 57819 |||||||||| ||||||| TACTCTTTTT ATCTTCA 265 hqPGS_C09HBa0168F14.1-2-_SGN-E216159- (58075 57819) ******************************************************************************** EST sequence 107 -strand 277 n (File: SGN-E216401-) 1 GGGTAGAAGG GGAAGGAGGC TGTGAAGACT CTTTCTCTTT TCTGCAGCAT GTTGCAAATT 61 GGAGGAAAAT ATTGTTGTCG AAAAATGCAG CTTTCGATAT CTATTTACAT TTGATTTCTG 121 AACACTCTGT AGTTGAGCAC TTTTGGTTTC GAAACCACCT TCATTTTGAG TTTGCCAGCT 181 TTTCGAGATA GTTAAGTTCT CTTAAATTTG GTTTATGCAG GCTAATTGTT GGATAAATTT 241 ATACTCTTTT TATCTTCAAA AAAAAAAAAA AAACTCG Predicted gene structure (within gDNA segment 58695 to 57029): Exon 1 58075 57819 ( 257 n); cDNA 2 258 ( 257 n); score: 1.000 PPA cDNA 259 274 MATCH C09HBa0168F14.1-2- SGN-E216401- 1.000 257 0.928 C PGS_C09HBa0168F14.1-2-_SGN-E216401- (58075 57819) Alignment (genomic DNA sequence = upper lines): GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG 58016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGAAGGG GAAGGAGGCT GTGAAGACTC TTTCTCTTTT CTGCAGCATG TTGCAAATTG 61 GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA 57956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC TATTTACATT TGATTTCTGA 121 ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT 57896 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT CATTTTGAGT TTGCCAGCTT 181 TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA 57836 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG CTAATTGTTG GATAAATTTA 241 TACTCTTTTT ATCTTCA 57819 |||||||||| ||||||| TACTCTTTTT ATCTTCA 258 hqPGS_C09HBa0168F14.1-2-_SGN-E216401- (58075 57819) ******************************************************************************** EST sequence 53 -strand 307 n (File: SGN-E224691-) 1 TAGTACTCGC AGAAAGGGTG GTAGAAAAGA ATGTTGGTGT GTCCAAACTC TTTCTCTTTT 61 CTGCAGCATG TTTCCCATTG TAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC 121 TATTTACATT TGATTTCTGA ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT 181 CATTTTTAGT TTGCCAGCTT TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG 241 CTAATTGTTG GATAAATTTA CACTCTTTTT ATCTTCCCNA AAAAAAAAAA AAAAAAAAAA 301 AAAAAAA Predicted gene structure (within gDNA segment 59119 to 56766): Exon 1 58094 57820 ( 275 n); cDNA 1 276 ( 276 n); score: 0.933 PPA cDNA 280 307 MATCH C09HBa0168F14.1-2- SGN-E224691- 0.933 275 0.896 C PGS_C09HBa0168F14.1-2-_SGN-E224691- (58094 57820) Alignment (genomic DNA sequence = upper lines): TAGTACTCGC AGAAAGGGTG GTAGAAGGGG AAGGAGG-CT GTGAAGACTC TTTCTCTTTT 58036 |||||||||| |||||||||| |||||| | | | || | || | |||| |||||||||| TAGTACTCGC AGAAAGGGTG GTAGAAAAGA ATGTTGGTGT GTCCAAACTC TTTCTCTTTT 60 CTGCAGCATG TTGCAAATTG GAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC 57976 |||||||||| || | |||| ||||||||| |||||||||| |||||||||| |||||||||| CTGCAGCATG TTTCCCATTG TAGGAAAATA TTGTTGTCGA AAAATGCAGC TTTCGATATC 120 TATTTACATT TGATTTCTGA ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT 57916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTACATT TGATTTCTGA ACACTCTGTA GTTGAGCACT TTTGGTTTCG AAACCACCTT 180 CATTTTGAGT TTGCCAGCTT TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG 57856 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTTAGT TTGCCAGCTT TTCGAGATAG TTAAGTTCTC TTAAATTTGG TTTATGCAGG 240 CTAATTGTTG GATAAATTTA TACTCTTTTT ATCTTC 57820 |||||||||| |||||||||| ||||||||| |||||| CTAATTGTTG GATAAATTTA CACTCTTTTT ATCTTC 276 hqPGS_C09HBa0168F14.1-2-_SGN-E224691- (58094 57820) ******************************************************************************** EST sequence 241 +strand 256 n (File: SGN-E301654+) 1 GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG CAAATTGGAG GAAAATATTG 61 TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA TTTCTGAACA CTCTGTAGTT 121 GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG CCAGCTTTTC GAGATAGTTA 181 AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT AAAAAAAAAA AAAAAAAAAA 241 AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 58662 to 56900): Exon 1 58062 57841 ( 222 n); cDNA 1 222 ( 222 n); score: 1.000 PPA cDNA 223 256 MATCH C09HBa0168F14.1-2- SGN-E301654+ 1.000 222 0.867 C PGS_C09HBa0168F14.1-2-_SGN-E301654+ (58062 57841) Alignment (genomic DNA sequence = upper lines): GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG CAAATTGGAG GAAAATATTG 58003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGCTGTG AAGACTCTTT CTCTTTTCTG CAGCATGTTG CAAATTGGAG GAAAATATTG 60 TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA TTTCTGAACA CTCTGTAGTT 57943 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCGAAAA ATGCAGCTTT CGATATCTAT TTACATTTGA TTTCTGAACA CTCTGTAGTT 120 GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG CCAGCTTTTC GAGATAGTTA 57883 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCACTTTT GGTTTCGAAA CCACCTTCAT TTTGAGTTTG CCAGCTTTTC GAGATAGTTA 180 AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT AA 57841 |||||||||| |||||||||| |||||||||| |||||||||| || AGTTCTCTTA AATTTGGTTT ATGCAGGCTA ATTGTTGGAT AA 222 hqPGS_C09HBa0168F14.1-2-_SGN-E301654+ (58062 57841) ******************************************************************************** EST sequence 104 -strand 269 n (File: SGN-E209230-) 1 GGGGCAGCTC CCGTTTTCGC CTTTGGCTAG CGTTAGGCCA CCACCACTGC CCGCGGAGGC 61 CGCGGGCAAT ATGTAGTAGG TGTACCCCGG ACGGACTTGT TCATTATTAG TATCGAGACC 121 CGGTTCGGAT TTTATTGTTA AAAATAAGGT AAAGTAGAGA ACGCAAGAAA GTAATATATT 181 CTCCCAGCGA ATGCAAGGAA CTTGGAATTA ATGCTCTTCA CATTAAGCTC CGAGCTACAG 241 GAGGCACCAG GCCCAGGAGT CTTGGTCTT Predicted gene structure (within gDNA segment 60938 to 57498): Exon 1 60182 60177 ( 6 n); cDNA 113 118 ( 6 n); score: 0.833 Intron 1 60176 59964 ( 213 n); Pd: 0.000 (s: 0), Pa: 0.995 (s: 0) Exon 2 59963 59931 ( 33 n); cDNA 119 148 ( 30 n); score: 0.606 Intron 2 59930 59473 ( 458 n); Pd: 0.397 (s: 0), Pa: 1.000 (s: 0.59) Exon 3 59472 59433 ( 40 n); cDNA 149 184 ( 36 n); score: 0.587 Intron 3 59432 59399 ( 34 n); Pd: 0.000 (s: 0.59), Pa: 0.000 (s: 0) Exon 4 59398 59387 ( 12 n); cDNA 185 197 ( 13 n); score: 0.792 Intron 4 59386 58377 (1010 n); Pd: 0.989 (s: 0), Pa: 1.000 (s: 0.98) Exon 5 58376 58307 ( 70 n); cDNA 198 267 ( 70 n); score: 0.914 MATCH C09HBa0168F14.1-2- SGN-E209230- 0.914 161 0.599 C PGS_C09HBa0168F14.1-2-_SGN-E209230- (60182 60177,59963 59931,59472 59433,59398 59387,58376 58307) Alignment (genomic DNA sequence = upper lines): TCGAGGAGAA AGACCAGGGA GCCTAAGGAA GAGACTGTTA CACTTGGACC AGCAACGAGG 60123 ||||| TCGAGA.... .......... .......... .......... .......... .......... 118 GAAGGTGAAT TGGTGTTCGG TGTTGCACAC ATTTTTGCAT CGTTCAATGA TACATTCATT 60063 .......... .......... .......... .......... .......... .......... 118 GTGAGTGAGT TATGGTTTTT GAAAATTTGA TGTAGAAATG TAGATTTGGC TTTGTTATTT 60003 .......... .......... .......... .......... .......... .......... 118 GTGTGTTTTA CTGATTCTTA GTGTATGTGA TGAATGCAGC ACGTTACTGA TTTGTCTGGA 59943 | || | | || ||| | | | .......... .......... .......... .........C CCGGTTCGGA TTT-TATTG- 137 AGAGAAACTA TGGTTCGCAT TACTGGTATG CCTTATAGAA ACAATTGTTT TATACTTTTG 59883 | ||| || | TTA-AAAATA AG........ .......... .......... .......... .......... 148 ACTGTATCCT TGTAGTTACT GATTAGCTGG TAGCAGTATA ATTGTTGCTT TCGATGCGAA 59823 .......... .......... .......... .......... .......... .......... 148 CATCGGTTTA TGTATAAATG TAGATGCCTT TCTTCCAGGA TGCTAATTCT GTTGTTGTTA 59763 .......... .......... .......... .......... .......... .......... 148 TCCCTATTGG ATAGACATAT ATTTACTTTT TCAATATAGA TGAATGTAAG TGGTAGGAAA 59703 .......... .......... .......... .......... .......... .......... 148 TGTAGAGCAT CTATAGTTTT AGGGAAATCA AGAATGTAGA GCATCTATAG TTTTAGGGAA 59643 .......... .......... .......... .......... .......... .......... 148 TCCTTGATAT GGTTGAGGCA GCAAATTATT GGTATTAGAA TATAATCCTT CTAGGAAGAA 59583 .......... .......... .......... .......... .......... .......... 148 GGAAAATGGG TATAGAGGTT CCGTCTAGTG TGGAGTTTAA TCTTAGTTGT TGATGTCGTA 59523 .......... .......... .......... .......... .......... .......... 148 ATGGTATGGA GAAGCCTTTC ATCTCAAATT GTTATACATT TTTGTTGCAG GTGGAATGAA 59463 || || | | .......... .......... .......... .......... .......... GT--AAAGTA 156 GGTGAAGGC- TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCAGGATG 59404 | ||| || || || || | | ||||| | -GAGAACGCA AGAAAGTAAT -A-TATTCTC C......... .......... .......... 184 TGTCACAGCG -ATGCAAGGT AGTGTCTTGT TTGGTTCTGA TAAAGTCAAT TTCCTTAATT 59345 ||||| ||||||| .....CAGCG AATGCAAG.. .......... .......... .......... .......... 197 CTACTTAATT GTTAGTTAAG CTCATCAGAT ATAAAGTTGG TCTAGTTCAG GTCTATATCA 59285 .......... .......... .......... .......... .......... .......... 197 ATATAAACCA TTTATGTATG AACGAAAAAA ATGAAGACTT TTTGCCTATA TGGTACTGTT 59225 .......... .......... .......... .......... .......... .......... 197 CACAGAGATT AATATTAGAT TTTATTTCTG AAGAAAGTCA CTATACTAAT TTCACTGGAT 59165 .......... .......... .......... .......... .......... .......... 197 ATTGATGTAA TGTTTAGTTC TCCTGGATGT TGCATTCCAT GTTGGTGCAG GGATTTATCC 59105 .......... .......... .......... .......... .......... .......... 197 TTTCTTGCAT TGACCAGTAA TATAGGTGCC AAATTACATA GCTCTTCTAT AAGTGTAGAG 59045 .......... .......... .......... .......... .......... .......... 197 TGTTGCTTTG TAGATAAAAT TTAGCAGTTT CGAAATTTAA GACCTTTTGG ATCTTCTGAT 58985 .......... .......... .......... .......... .......... .......... 197 GCCTCCCTTT TCTGAATGTG TGCTAAAGCC AATAATTCTG CCGACTAGAC ATTCGAAGAT 58925 .......... .......... .......... .......... .......... .......... 197 CTTATAATGT ACATGATGGC CTTTACTCCT ATCTATGTTT CTTGCTAGGA TGTAGATGGT 58865 .......... .......... .......... .......... .......... .......... 197 CTATAAGATT GTTTTTGGGT TCCATATGCC TGATGCATCT TACTTTTGCT TAACAATAAA 58805 .......... .......... .......... .......... .......... .......... 197 AAATTTGTGT ATAATTGATT GGAATAAATG CCATTCCTTC GAACATATTG TAGAGACCCG 58745 .......... .......... .......... .......... .......... .......... 197 TAGATTTTAT GTCACCGGTT TGGATCTATT AGGCTTTGTT ATGGAAGATT CCATTCTGAA 58685 .......... .......... .......... .......... .......... .......... 197 GTGATGTGTG CACCTTCAAT TTTCGGACAC TTTTACCACT AACAGTTGCA TAATCGCTGG 58625 .......... .......... .......... .......... .......... .......... 197 TGGTGCTTGA ACTATGGAAA AATGTGTGCT TCAGATTCTA TTTAAGCGTC AAGGTTTCGG 58565 .......... .......... .......... .......... .......... .......... 197 AATGGTGGTC AGAATCATTG TTAATGGGTT CCATGCTATG CCATTTATTC AGAGTCTAAA 58505 .......... .......... .......... .......... .......... .......... 197 TATAGCTACA CTATATTTAA GACTCAAGCT CGGATACGTC CATCTTTATC CATCTAGTCT 58445 .......... .......... .......... .......... .......... .......... 197 GATGTCACTA GGTCTCGTCA TCACTTGTTA ATCTTTTAAA ATATTATTTA TGAACTTTTG 58385 .......... .......... .......... .......... .......... .......... 197 ATTTACAGGA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCAACA 58325 || |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ........GA ACTTGGAATT AATGCTCTTC ACATTAAGCT CCGAGCTACA GGAGGCACCA 249 AGACCAAGAC TCCTGGTC 58307 | ||| || || ||||| GGCCCAGGAG TCTTGGTC 267 hqPGS_C09HBa0168F14.1-2-_SGN-E209230- (58376 58307) ******************************************************************************** EST sequence 226 +strand 333 n (File: SGN-E279237+) 1 GCACGAGGCT GAGTATCTCT GATTTTTCTC ACTATCAAGC TCAGCTGGAG CCATGTCGAG 61 GAGAAAGACC CCGCAGCCTA AGGAAGAGAC TGTTACACTT GGACCAGCAA CGAGGGAAGG 121 TGAATTGGTG TTCGGTGTTG CACACATTTT TGCATCGTTC AATGATACAT TCATTCACGT 181 TACTGATTTG TCTGGAAGAG AAACTATGGT TCGCATTACT GGTGGAATGA AGGTGAAGGC 241 TGACAGAGAT GAGTCTTCTC CGTATGCTGC TATGCTTGCA GCTCATGATG TGTCACAGCG 301 ATGCAAGGAA CTTGGAATTA ATGCTCTTAA CAT Predicted gene structure (within gDNA segment 61503 to 58526): Exon 1 60364 60311 ( 54 n); cDNA 2 55 ( 54 n); score: 0.907 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 0.92), Pa: 1.000 (s: 0.94) Exon 2 60182 60063 ( 120 n); cDNA 56 175 ( 120 n); score: 0.975 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 3 59963 59918 ( 46 n); cDNA 176 221 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 59472 59387 ( 86 n); cDNA 222 307 ( 86 n); score: 0.988 MATCH C09HBa0168F14.1-2- SGN-E279237+ 0.965 306 0.919 C PGS_C09HBa0168F14.1-2-_SGN-E279237+ (60364 60311,60182 60063,59963 59918,59472 59387) Alignment (genomic DNA sequence = upper lines): CAAGCTGCTG AGTATCTCTG AATTTTCTCA CTATCAAGCT CAGCTGAAGC CATGGTACTA 60305 || | |||| |||||||||| | |||||||| |||||||||| |||||| ||| |||| CACGAGGCTG AGTATCTCTG ATTTTTCTCA CTATCAAGCT CAGCTGGAGC CATG...... 55 TTTCTCGTGC TGAAATTTCC ATTTCATTAC TGAAGATTTG CTGTTTATGT CGATTATATT 60245 .......... .......... .......... .......... .......... .......... 55 TAGTTTGATT TGATTAATTT GAATTGAAAA ACTGTATGTT CGATGAAATT GTTTGTTTGT 60185 .......... .......... .......... .......... .......... .......... 55 AGTCGAGGAG AAAGACCAGG GAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA 60125 |||||||| ||||||| | ||||||||| |||||||||| |||||||||| |||||||||| ..TCGAGGAG AAAGACCCCG CAGCCTAAGG AAGAGACTGT TACACTTGGA CCAGCAACGA 113 GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT GATACATTCA 60065 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGGTGA ATTGGTGTTC GGTGTTGCAC ACATTTTTGC ATCGTTCAAT GATACATTCA 173 TTGTGAGTGA GTTATGGTTT TTGAAAATTT GATGTAGAAA TGTAGATTTG GCTTTGTTAT 60005 || TT........ .......... .......... .......... .......... .......... 175 TTGTGTGTTT TACTGATTCT TAGTGTATGT GATGAATGCA GCACGTTACT GATTTGTCTG 59945 ||||||||| |||||||||| .......... .......... .......... .......... .CACGTTACT GATTTGTCTG 194 GAAGAGAAAC TATGGTTCGC ATTACTGGTA TGCCTTATAG AAACAATTGT TTTATACTTT 59885 |||||||||| |||||||||| ||||||| GAAGAGAAAC TATGGTTCGC ATTACTG... .......... .......... .......... 221 TGACTGTATC CTTGTAGTTA CTGATTAGCT GGTAGCAGTA TAATTGTTGC TTTCGATGCG 59825 .......... .......... .......... .......... .......... .......... 221 AACATCGGTT TATGTATAAA TGTAGATGCC TTTCTTCCAG GATGCTAATT CTGTTGTTGT 59765 .......... .......... .......... .......... .......... .......... 221 TATCCCTATT GGATAGACAT ATATTTACTT TTTCAATATA GATGAATGTA AGTGGTAGGA 59705 .......... .......... .......... .......... .......... .......... 221 AATGTAGAGC ATCTATAGTT TTAGGGAAAT CAAGAATGTA GAGCATCTAT AGTTTTAGGG 59645 .......... .......... .......... .......... .......... .......... 221 AATCCTTGAT ATGGTTGAGG CAGCAAATTA TTGGTATTAG AATATAATCC TTCTAGGAAG 59585 .......... .......... .......... .......... .......... .......... 221 AAGGAAAATG GGTATAGAGG TTCCGTCTAG TGTGGAGTTT AATCTTAGTT GTTGATGTCG 59525 .......... .......... .......... .......... .......... .......... 221 TAATGGTATG GAGAAGCCTT TCATCTCAAA TTGTTATACA TTTTTGTTGC AGGTGGAATG 59465 |||||||| .......... .......... .......... .......... .......... ..GTGGAATG 229 AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCAGGAT 59405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AAGGTGAAGG CTGACAGAGA TGAGTCTTCT CCGTATGCTG CTATGCTTGC AGCTCATGAT 289 GTGTCACAGC GATGCAAG 59387 |||||||||| |||||||| GTGTCACAGC GATGCAAG 307 hqPGS_C09HBa0168F14.1-2-_SGN-E279237+ (60364 60311,60182 60063,59963 59918,59472 59387) ******************************************************************************** EST sequence 137 +strand 191 n (File: SGN-E337832+) 1 TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT GTAGTCGAGG 61 AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCATCAAC GACGGAAGGT 121 GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT CATTCACGTT 181 ACTGATTTGT C Predicted gene structure (within gDNA segment 60836 to 59283): Exon 1 60236 60063 ( 174 n); cDNA 1 174 ( 174 n); score: 0.989 Intron 1 60062 59964 ( 99 n); Pd: 0.008 (s: 1.00), Pa: 0.995 (s: 0) Exon 2 59963 59947 ( 17 n); cDNA 175 191 ( 17 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E337832+ 0.989 191 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E337832+ (60236 60063,59963 59947) Alignment (genomic DNA sequence = upper lines): TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT GTAGTCGAGG 60177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT GTAGTCGAGG 60 AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC GAGGGAAGGT 60117 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| || ||||||| AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCATCAAC GACGGAAGGT 120 GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT CATTGTGAGT 60057 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATACATT CATT...... 174 GAGTTATGGT TTTTGAAAAT TTGATGTAGA AATGTAGATT TGGCTTTGTT ATTTGTGTGT 59997 .......... .......... .......... .......... .......... .......... 174 TTTACTGATT CTTAGTGTAT GTGATGAATG CAGCACGTTA CTGATTTGTC 59947 ||||||| |||||||||| .......... .......... .......... ...CACGTTA CTGATTTGTC 191 hqPGS_C09HBa0168F14.1-2-_SGN-E337832+ (60236 60063,59963 59947) ******************************************************************************** EST sequence 143 +strand 192 n (File: SGN-E327322+) 1 TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGTCGA 61 GGAGAAAGAC CAGGGAGCCT AAGGAAGAGA CTGTTACACT TGGACCAGCA ACGAGGGAAG 121 GTGAATTGGT GTTCGGTGTT GCACACATTT TTGCATCGTT CAATGATAAC TTTCATTTCA 181 CGTTACTGAT TT Predicted gene structure (within gDNA segment 60966 to 59221): Exon 1 60366 60311 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 60182 60063 ( 120 n); cDNA 57 177 ( 121 n); score: 0.971 Intron 2 60062 59964 ( 99 n); Pd: 0.008 (s: 0.93), Pa: 0.995 (s: 0) Exon 3 59963 59950 ( 14 n); cDNA 178 192 ( 15 n); score: 0.821 MATCH C09HBa0168F14.1-2- SGN-E327322+ 0.980 190 0.990 C PGS_C09HBa0168F14.1-2-_SGN-E327322+ (60366 60311,60182 60063,59963 59950) Alignment (genomic DNA sequence = upper lines): TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATGGTAC 60307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTCAAGCTGC TGAGTATCTC TGAATTTTCT CACTATCAAG CTCAGCTGAA GCCATG.... 56 TATTTCTCGT GCTGAAATTT CCATTTCATT ACTGAAGATT TGCTGTTTAT GTCGATTATA 60247 .......... .......... .......... .......... .......... .......... 56 TTTAGTTTGA TTTGATTAAT TTGAATTGAA AAACTGTATG TTCGATGAAA TTGTTTGTTT 60187 .......... .......... .......... .......... .......... .......... 56 GTAGTCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 60127 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TCGAGG AGAAAGACCA GGGAGCCTAA GGAAGAGACT GTTACACTTG GACCAGCAAC 112 GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGAT-ACAT 60068 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || | GAGGGAAGGT GAATTGGTGT TCGGTGTTGC ACACATTTTT GCATCGTTCA ATGATAACTT 172 TCATTGTGAG TGAGTTATGG TTTTTGAAAA TTTGATGTAG AAATGTAGAT TTGGCTTTGT 60008 ||||| TCATT..... .......... .......... .......... .......... .......... 177 TATTTGTGTG TTTTACTGAT TCTTAGTGTA TGTGATGAAT GCAG-CACGT TACTGATTT 59950 ||||| ||||||||| .......... .......... .......... .......... ....TCACGT TACTGATTT 192 hqPGS_C09HBa0168F14.1-2-_SGN-E327322+ (60366 60311,60182 60063,59963 59950) ******************************************************************************** EST sequence 147 +strand 797 n (File: SGN-E551898+) 1 AAGAAATCCA GGATAACATT AGGAGCAGGC GCAACAAAAT CTTCCTCCTT ATGGAAGAGG 61 TACGTCGGCT AAGAATACAA CAAAGGTTAA AGAACTCTAA CACTAGAGGT GAGACCGGTG 121 AAGATGAAAA TGAGATGCCA GATATCCCAT CAACGATACC ATTTCTTCCT AACATGACTC 181 CAAAGACACT AAAGCAGCTT TATCTTACAA GCTTTTCATT TATAGCTGGG ATTATGGTCT 241 TCGGTGGATT ACTTGCCCCA GTACTTGAGC TGAAATTAGG TCTAGGAGGC ACCTCATACG 301 AAGATTTTAT ACGTAACATG CATTTGCCTA TGCAATTGAG CCAGGTCGAC CCCATAGTGG 361 CGTCCTTTTC AGGCGGGGCA GTGGGAGTCA TCTCAGCCCT CATGCTAATA GAAGCTAACA 421 ATGTAGTCCA ACAAGAGAAG AAAAAGTGCA AATATTGCTA TGGAAGTGGG TACTTGGCAT 481 GTGCACGATG TTCAGCAAGC GGTAAATGCC TCTATACTGA ACCAATTTCA GTGAATGGTT 541 CTTATCAATC GTTGCGTGCA CCAACTCTTA AAAGATGTGC GAATTGCTCC GGGACTGGAA 601 AGGTAATGTG CCCTACATGT CTGTGTACTG GGATGGTGAT GGCAAGTGAA CATGACCTTC 661 GAATAGATCC ATTTGATTAA GTACAAATTC TCATTTTGTA ACTTATATTC ATACAAAAAA 721 TAATTGGTCA TTTTGGTTTT GTTATAAGCA TAGTTATTAT ATATAGAATA TCCTTTGGTT 781 ATGAANAANA AAAAAAA Predicted gene structure (within gDNA segment 63345 to 61142): Exon 1 63345 63297 ( 49 n); cDNA 215 263 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 63161 63085 ( 77 n); cDNA 264 340 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 (s: 1.00), Pa: 0.476 (s: 1.00) Exon 3 62874 62747 ( 128 n); cDNA 341 468 ( 128 n); score: 1.000 Intron 3 62746 62603 ( 144 n); Pd: 0.949 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 62602 62469 ( 134 n); cDNA 469 602 ( 134 n); score: 1.000 Intron 4 62468 62055 ( 414 n); Pd: 0.996 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 5 62054 61864 ( 191 n); cDNA 603 793 ( 191 n); score: 0.979 MATCH C09HBa0168F14.1-2- SGN-E551898+ 0.992 579 0.726 C PGS_C09HBa0168F14.1-2-_SGN-E551898+ (63345 63297,63161 63085,62874 62747,62602 62469,62054 61864) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 263 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 263 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 263 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 319 GCATTTGCCT ATGCAATTGA GGTATGTAAA CTGTAACCTG AAGTCCTGAA CTACATTTTC 63046 |||||||||| |||||||||| | GCATTTGCCT ATGCAATTGA G......... .......... .......... .......... 340 ATGTGTAGAA AAGGTCGGTG AATTGTTCCT CACAAACATC ATTAAATTGT GCACATTTGT 62986 .......... .......... .......... .......... .......... .......... 340 TCACTGCATT GTTCTTTACC TTCCCAAAAA AGGAGCGTCA CAAAATAGAA ACAGAAGACC 62926 .......... .......... .......... .......... .......... .......... 340 ACTTACGTCC TCGTGAATTT GGGTACCGAC TTCTTTTTCT CTTCTTCTCA GCCAGGTCGA 62866 ||||||||| .......... .......... .......... .......... .......... .CCAGGTCGA 349 CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 62806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 409 AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTGG 62746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTG. 468 TATGTTCATG TGAAACTTAT TACATATCAT TGCACAATGT CTACACTATT GAACTCTCGA 62686 .......... .......... .......... .......... .......... .......... 468 CCAATAGTCA GTGTCTTTTT TTGATTATTT GAGTTCATGG TACTGACCAT AATCTCATTT 62626 .......... .......... .......... .......... .......... .......... 468 CATGGTCATT TGATTTGGTG TAGGGTACTT GGCATGTGCA CGATGTTCAG CAAGCGGTAA 62566 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GGTACTT GGCATGTGCA CGATGTTCAG CAAGCGGTAA 505 ATGCCTCTAT ACTGAACCAA TTTCAGTGAA TGGTTCTTAT CAATCGTTGC GTGCACCAAC 62506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTCTAT ACTGAACCAA TTTCAGTGAA TGGTTCTTAT CAATCGTTGC GTGCACCAAC 565 TCTTAAAAGA TGTGCGAATT GCTCCGGGAC TGGAAAGGTA TGAAACATGA TCATCTCCCT 62446 |||||||||| |||||||||| |||||||||| ||||||| TCTTAAAAGA TGTGCGAATT GCTCCGGGAC TGGAAAG... .......... .......... 602 ACTTCATGCA CTCAACAGTC ATATTATATC AGTTCAATAA GTAGTAACTT TACAAGAAAA 62386 .......... .......... .......... .......... .......... .......... 602 AACAAATATC TGTGTCTGTT ACAATCCGTC CCATAGTCGA GCATCTCAAA AATGTGTGAC 62326 .......... .......... .......... .......... .......... .......... 602 CGAAGAATAA AACAGTCATA TTCGTCCACA TTACATGGCC AAAATGAGGC CTTCCCTTGT 62266 .......... .......... .......... .......... .......... .......... 602 AGTTAGAATA ACATCCTCAA CAACAACAAG GTTCGTTGAA CCCCTTCTTC CTATCCTTGC 62206 .......... .......... .......... .......... .......... .......... 602 TCGTTGCTAC CTACGAAATG AGTTCCTCTA AGAAGATGCA TGTCACAAAT ACGCGCATGC 62146 .......... .......... .......... .......... .......... .......... 602 ATCTCTCATC ACATGTTACG ATAACTTTCC CTTATCGTAT ACGTATATAT GCTAATGTTT 62086 .......... .......... .......... .......... .......... .......... 602 TTTGTTTCAT ATTATGATAT TTTTTGGCTA GGTAATGTGC CCTACATGTC TGTGTACTGG 62026 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTAATGTGC CCTACATGTC TGTGTACTGG 631 GATGGTGATG GCAAGTGAAC ATGACCTTCG AATAGATCCA TTTGATTAAG TACAAATTCT 61966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTGATG GCAAGTGAAC ATGACCTTCG AATAGATCCA TTTGATTAAG TACAAATTCT 691 CATTTTGTAA CTTATATTCA TACAAAAAAT AATTGGTCAT TTTGGTTTTG TTATAAGCAT 61906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTGTAA CTTATATTCA TACAAAAAAT AATTGGTCAT TTTGGTTTTG TTATAAGCAT 751 AGTTATTATA TATAGAATAT CCTTTGGTTA TGAAGATGAT AA 61864 |||||||||| |||||||||| |||||||||| |||| | | || AGTTATTATA TATAGAATAT CCTTTGGTTA TGAANAANAA AA 793 hqPGS_C09HBa0168F14.1-2-_SGN-E551898+ (63345 63297,63161 63085,62874 62747,62602 62469,62054 61864) ******************************************************************************** EST sequence 13 -strand 423 n (File: SGN-E238878-) 1 AGTGGAGTCA TCTCAGCCCT CATGCTAATA GAAGCTAACA ATGTAGTCCA ACAAGAGAAG 61 AAAAAGTGCA AATATTGCTA TGGAAGTGGG TACTTGGCAT GTGCACGATG TTCAGCAAGC 121 GGTAAATGCC TCTATACTGA ACCAATTTCA GTGAATGGTT CTTATCAATC GTTGCGTGCA 181 CCAACTCTTA AAAGATGTGC GAATTGCTCC GGGACTGGAA AGGTAATGTG CCCTACATGT 241 CTGTGTACTG GGATGGTGAT GGCAAGTGAA CATGACCTTC GAATAGATCC ATTTGATTAA 301 GTACAAATTC TCATTTTGTA ACTTATATTC ATACAAAAAA TAATTGGTCA TTTTGGTTTT 361 GTTATAAGCA TAGTTATTAT ATATAGAATA TCCTTTGGTT ATGAAGAAAA AAAAAAAAAA 421 AAA Predicted gene structure (within gDNA segment 63345 to 61110): Exon 1 62831 62747 ( 85 n); cDNA 4 88 ( 85 n); score: 1.000 Intron 1 62746 62603 ( 144 n); Pd: 0.949 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 62602 62469 ( 134 n); cDNA 89 222 ( 134 n); score: 1.000 Intron 2 62468 62055 ( 414 n); Pd: 0.996 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 62054 61871 ( 184 n); cDNA 223 406 ( 184 n); score: 1.000 Intron 3 61870 61274 ( 597 n); Pd: 0.000 (s: 1.00), Pa: 0.996 (s: 0) Exon 4 61273 61257 ( 17 n); cDNA 407 423 ( 17 n); score: 0.647 MATCH C09HBa0168F14.1-2- SGN-E238878- 1.000 420 0.993 C PGS_C09HBa0168F14.1-2-_SGN-E238878- (62831 62747,62602 62469,62054 61871,61273 61257) Alignment (genomic DNA sequence = upper lines): GGAGTCATCT CAGCCCTCAT GCTAATAGAA GCTAACAATG TAGTCCAACA AGAGAAGAAA 62772 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTCATCT CAGCCCTCAT GCTAATAGAA GCTAACAATG TAGTCCAACA AGAGAAGAAA 63 AAGTGCAAAT ATTGCTATGG AAGTGGTATG TTCATGTGAA ACTTATTACA TATCATTGCA 62712 |||||||||| |||||||||| ||||| AAGTGCAAAT ATTGCTATGG AAGTG..... .......... .......... .......... 88 CAATGTCTAC ACTATTGAAC TCTCGACCAA TAGTCAGTGT CTTTTTTTGA TTATTTGAGT 62652 .......... .......... .......... .......... .......... .......... 88 TCATGGTACT GACCATAATC TCATTTCATG GTCATTTGAT TTGGTGTAGG GTACTTGGCA 62592 | |||||||||| .......... .......... .......... .......... .........G GTACTTGGCA 99 TGTGCACGAT GTTCAGCAAG CGGTAAATGC CTCTATACTG AACCAATTTC AGTGAATGGT 62532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCACGAT GTTCAGCAAG CGGTAAATGC CTCTATACTG AACCAATTTC AGTGAATGGT 159 TCTTATCAAT CGTTGCGTGC ACCAACTCTT AAAAGATGTG CGAATTGCTC CGGGACTGGA 62472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTATCAAT CGTTGCGTGC ACCAACTCTT AAAAGATGTG CGAATTGCTC CGGGACTGGA 219 AAGGTATGAA ACATGATCAT CTCCCTACTT CATGCACTCA ACAGTCATAT TATATCAGTT 62412 ||| AAG....... .......... .......... .......... .......... .......... 222 CAATAAGTAG TAACTTTACA AGAAAAAACA AATATCTGTG TCTGTTACAA TCCGTCCCAT 62352 .......... .......... .......... .......... .......... .......... 222 AGTCGAGCAT CTCAAAAATG TGTGACCGAA GAATAAAACA GTCATATTCG TCCACATTAC 62292 .......... .......... .......... .......... .......... .......... 222 ATGGCCAAAA TGAGGCCTTC CCTTGTAGTT AGAATAACAT CCTCAACAAC AACAAGGTTC 62232 .......... .......... .......... .......... .......... .......... 222 GTTGAACCCC TTCTTCCTAT CCTTGCTCGT TGCTACCTAC GAAATGAGTT CCTCTAAGAA 62172 .......... .......... .......... .......... .......... .......... 222 GATGCATGTC ACAAATACGC GCATGCATCT CTCATCACAT GTTACGATAA CTTTCCCTTA 62112 .......... .......... .......... .......... .......... .......... 222 TCGTATACGT ATATATGCTA ATGTTTTTTG TTTCATATTA TGATATTTTT TGGCTAGGTA 62052 ||| .......... .......... .......... .......... .......... .......GTA 225 ATGTGCCCTA CATGTCTGTG TACTGGGATG GTGATGGCAA GTGAACATGA CCTTCGAATA 61992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGCCCTA CATGTCTGTG TACTGGGATG GTGATGGCAA GTGAACATGA CCTTCGAATA 285 GATCCATTTG ATTAAGTACA AATTCTCATT TTGTAACTTA TATTCATACA AAAAATAATT 61932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCATTTG ATTAAGTACA AATTCTCATT TTGTAACTTA TATTCATACA AAAAATAATT 345 GGTCATTTTG GTTTTGTTAT AAGCATAGTT ATTATATATA GAATATCCTT TGGTTATGAA 61872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCATTTTG GTTTTGTTAT AAGCATAGTT ATTATATATA GAATATCCTT TGGTTATGAA 405 GATGATAACT CCTCATCTAT TTAACAATGA AGGTGTTAGA AATTTCGTTA AGCGTATGTG 61812 | G......... .......... .......... .......... .......... .......... 406 TTCAAGATTT GATATAAATG TATGAAACAG AATTTTCGAC CTATATACTG AATACCATTT 61752 .......... .......... .......... .......... .......... .......... 406 TTATATATGT GGTATATGAC GAAAGAGTGT CTGATTCGCC ACCTCATCTT TTTATGAGTA 61692 .......... .......... .......... .......... .......... .......... 406 ACTAATAATA ACACCAATTA TGCATTTCGA AAGTTAGGCT ATATGAATTT TTACTTCTTT 61632 .......... .......... .......... .......... .......... .......... 406 GTTTAATCTT AATTCATGTT AATGTAATTG TTGGATAATT ATAATTATAA ATAATAAATT 61572 .......... .......... .......... .......... .......... .......... 406 ATTCAAATTA ATACATATCT GACAGTTTGG CCGAGTGGTC TAAGGCGCCA GATTTAGGCT 61512 .......... .......... .......... .......... .......... .......... 406 CTGGTCCGAA AGGGCGTGGG TTCAAATCCC ACAGCTGTCA ATAATTTTTT TCGATTTTTA 61452 .......... .......... .......... .......... .......... .......... 406 AAAAACTTAA TTTCTAATCT TGTTTTTCTT CTATACTATA ACAGTATAAC TAGTTTTTTA 61392 .......... .......... .......... .......... .......... .......... 406 TTTGTCTAAG TTTTGATAAA TAATATAATT TGATATTTAT ATTGATAAGA AATAGTAAAT 61332 .......... .......... .......... .......... .......... .......... 406 ATATCACAAA ATTAATTGAA ATATACATAA ACTTATTTGA ACACTGTAAA AATTTTAGGT 61272 .......... .......... .......... .......... .......... ........AA 408 GAAAAAAGAA AGTAA 61257 |||||| || | || AAAAAAAAAA AAAAA 423 hqPGS_C09HBa0168F14.1-2-_SGN-E238878- (62831 62747,62602 62469,62054 61871) ******************************************************************************** EST sequence 14 -strand 296 n (File: SGN-E239377-) 1 GCCTCTATAC TGAACCAATT TCAGTGAATG GTTCTTATCA ATAGTTGCGT GCACCAACTC 61 TTAAAAAATG TGCAAATTGC CCCGGGACTG GAAAGGTAAT GTGCCCTACA TGTCTGTGTA 121 CTGGGATGGT GATGGCCAGT GAACATGACC TTCGAATAGA TCCATTTGAT TAAGTACAAA 181 TTCTCATTTT GTAACTTATA TTCATACAAA AAATAATTGG TCATTTTGGC TTTGTTATAA 241 GCATAGTTAT TATATATAGA ATATCCTTTG GTTATCAAGA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 63173 to 61065): Exon 1 62563 62469 ( 95 n); cDNA 1 95 ( 95 n); score: 0.958 Intron 1 62468 62055 ( 414 n); Pd: 0.996 (s: 0.94), Pa: 0.989 (s: 0.98) Exon 2 62054 61871 ( 184 n); cDNA 96 279 ( 184 n); score: 0.984 Intron 2 61870 61274 ( 597 n); Pd: 0.000 (s: 0.96), Pa: 0.996 (s: 0) Exon 3 61273 61257 ( 17 n); cDNA 280 296 ( 17 n); score: 0.647 MATCH C09HBa0168F14.1-2- SGN-E239377- 0.975 296 1.000 C PGS_C09HBa0168F14.1-2-_SGN-E239377- (62563 62469,62054 61871,61273 61257) Alignment (genomic DNA sequence = upper lines): GCCTCTATAC TGAACCAATT TCAGTGAATG GTTCTTATCA ATCGTTGCGT GCACCAACTC 62504 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GCCTCTATAC TGAACCAATT TCAGTGAATG GTTCTTATCA ATAGTTGCGT GCACCAACTC 60 TTAAAAGATG TGCGAATTGC TCCGGGACTG GAAAGGTATG AAACATGATC ATCTCCCTAC 62444 |||||| ||| ||| |||||| ||||||||| ||||| TTAAAAAATG TGCAAATTGC CCCGGGACTG GAAAG..... .......... .......... 95 TTCATGCACT CAACAGTCAT ATTATATCAG TTCAATAAGT AGTAACTTTA CAAGAAAAAA 62384 .......... .......... .......... .......... .......... .......... 95 CAAATATCTG TGTCTGTTAC AATCCGTCCC ATAGTCGAGC ATCTCAAAAA TGTGTGACCG 62324 .......... .......... .......... .......... .......... .......... 95 AAGAATAAAA CAGTCATATT CGTCCACATT ACATGGCCAA AATGAGGCCT TCCCTTGTAG 62264 .......... .......... .......... .......... .......... .......... 95 TTAGAATAAC ATCCTCAACA ACAACAAGGT TCGTTGAACC CCTTCTTCCT ATCCTTGCTC 62204 .......... .......... .......... .......... .......... .......... 95 GTTGCTACCT ACGAAATGAG TTCCTCTAAG AAGATGCATG TCACAAATAC GCGCATGCAT 62144 .......... .......... .......... .......... .......... .......... 95 CTCTCATCAC ATGTTACGAT AACTTTCCCT TATCGTATAC GTATATATGC TAATGTTTTT 62084 .......... .......... .......... .......... .......... .......... 95 TGTTTCATAT TATGATATTT TTTGGCTAGG TAATGTGCCC TACATGTCTG TGTACTGGGA 62024 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TAATGTGCCC TACATGTCTG TGTACTGGGA 126 TGGTGATGGC AAGTGAACAT GACCTTCGAA TAGATCCATT TGATTAAGTA CAAATTCTCA 61964 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGATGGC CAGTGAACAT GACCTTCGAA TAGATCCATT TGATTAAGTA CAAATTCTCA 186 TTTTGTAACT TATATTCATA CAAAAAATAA TTGGTCATTT TGGTTTTGTT ATAAGCATAG 61904 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TTTTGTAACT TATATTCATA CAAAAAATAA TTGGTCATTT TGGCTTTGTT ATAAGCATAG 246 TTATTATATA TAGAATATCC TTTGGTTATG AAGATGATAA CTCCTCATCT ATTTAACAAT 61844 |||||||||| |||||||||| ||||||||| ||| TTATTATATA TAGAATATCC TTTGGTTATC AAG....... .......... .......... 279 GAAGGTGTTA GAAATTTCGT TAAGCGTATG TGTTCAAGAT TTGATATAAA TGTATGAAAC 61784 .......... .......... .......... .......... .......... .......... 279 AGAATTTTCG ACCTATATAC TGAATACCAT TTTTATATAT GTGGTATATG ACGAAAGAGT 61724 .......... .......... .......... .......... .......... .......... 279 GTCTGATTCG CCACCTCATC TTTTTATGAG TAACTAATAA TAACACCAAT TATGCATTTC 61664 .......... .......... .......... .......... .......... .......... 279 GAAAGTTAGG CTATATGAAT TTTTACTTCT TTGTTTAATC TTAATTCATG TTAATGTAAT 61604 .......... .......... .......... .......... .......... .......... 279 TGTTGGATAA TTATAATTAT AAATAATAAA TTATTCAAAT TAATACATAT CTGACAGTTT 61544 .......... .......... .......... .......... .......... .......... 279 GGCCGAGTGG TCTAAGGCGC CAGATTTAGG CTCTGGTCCG AAAGGGCGTG GGTTCAAATC 61484 .......... .......... .......... .......... .......... .......... 279 CCACAGCTGT CAATAATTTT TTTCGATTTT TAAAAAACTT AATTTCTAAT CTTGTTTTTC 61424 .......... .......... .......... .......... .......... .......... 279 TTCTATACTA TAACAGTATA ACTAGTTTTT TATTTGTCTA AGTTTTGATA AATAATATAA 61364 .......... .......... .......... .......... .......... .......... 279 TTTGATATTT ATATTGATAA GAAATAGTAA ATATATCACA AAATTAATTG AAATATACAT 61304 .......... .......... .......... .......... .......... .......... 279 AAACTTATTT GAACACTGTA AAAATTTTAG GTGAAAAAAG AAAGTAA 61257 |||||| ||| || .......... .......... .......... AAAAAAAAAA AAAAAAA 296 hqPGS_C09HBa0168F14.1-2-_SGN-E239377- (62563 62469,62054 61871) ******************************************************************************** EST sequence 177 +strand 586 n (File: SGN-E270644+) 1 TTTCTTCCTA ACATGACTCC AAAGACACTA AAGCAGCTTT ATCTTACAAG CTTTTCATTT 61 ATAGCTGGGA TTATGGTCTT CGGTGGATTA CTTGCCCCAG TACTTGAGCT GAAATTAGGT 121 CTAGGAGGCA CCTCATACGA AGATTTTATA CGTAACATGC ATTTGCCTAT GCAATTGAGC 181 CAGGTCGACC CCATAGTGGC GTCCTTTTCA GGCGGGGCAG TGGGAGTCAT CTCAGCCCTC 241 ATGCTAATAG AAGCTAACAA TGTAGTCCAA CAAGAGAAGA AAAAGTGCAA ATATTGCTAT 301 GGAAGTGGGT ACTTGGCATG TGCACGATGT TCAGCAAGCG GTAAATGCCT CTATACTGAA 361 CCAATTTCAG TGAATGGTTC TTATCAATCG TTGCGTGCAC CAACTCTTAA AAGATGTGCG 421 AATTGCTCCG GGACTGGAAA GGTATGAAAC ATGATCATCT CCCTACTTCA TGCACTCAAC 481 AGTCATATTA TATCAGTTCA ATAAGTAGTA ACTTTACAAG AAAAAACAAA TATCTGTGTC 541 TGTTACAATC CGTCCCATAG TCGAGCATCT CAAAAATGTG TGACCG Predicted gene structure (within gDNA segment 63345 to 61714): Exon 1 63345 63297 ( 49 n); cDNA 54 102 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 63161 63085 ( 77 n); cDNA 103 179 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 (s: 1.00), Pa: 0.476 (s: 1.00) Exon 3 62874 62747 ( 128 n); cDNA 180 307 ( 128 n); score: 1.000 Intron 3 62746 62603 ( 144 n); Pd: 0.949 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 62602 62324 ( 279 n); cDNA 308 586 ( 279 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E270644+ 1.000 533 0.910 C PGS_C09HBa0168F14.1-2-_SGN-E270644+ (63345 63297,63161 63085,62874 62747,62602 62324) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 102 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 102 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 102 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 158 GCATTTGCCT ATGCAATTGA GGTATGTAAA CTGTAACCTG AAGTCCTGAA CTACATTTTC 63046 |||||||||| |||||||||| | GCATTTGCCT ATGCAATTGA G......... .......... .......... .......... 179 ATGTGTAGAA AAGGTCGGTG AATTGTTCCT CACAAACATC ATTAAATTGT GCACATTTGT 62986 .......... .......... .......... .......... .......... .......... 179 TCACTGCATT GTTCTTTACC TTCCCAAAAA AGGAGCGTCA CAAAATAGAA ACAGAAGACC 62926 .......... .......... .......... .......... .......... .......... 179 ACTTACGTCC TCGTGAATTT GGGTACCGAC TTCTTTTTCT CTTCTTCTCA GCCAGGTCGA 62866 ||||||||| .......... .......... .......... .......... .......... .CCAGGTCGA 188 CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 62806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 248 AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTGG 62746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTG. 307 TATGTTCATG TGAAACTTAT TACATATCAT TGCACAATGT CTACACTATT GAACTCTCGA 62686 .......... .......... .......... .......... .......... .......... 307 CCAATAGTCA GTGTCTTTTT TTGATTATTT GAGTTCATGG TACTGACCAT AATCTCATTT 62626 .......... .......... .......... .......... .......... .......... 307 CATGGTCATT TGATTTGGTG TAGGGTACTT GGCATGTGCA CGATGTTCAG CAAGCGGTAA 62566 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GGTACTT GGCATGTGCA CGATGTTCAG CAAGCGGTAA 344 ATGCCTCTAT ACTGAACCAA TTTCAGTGAA TGGTTCTTAT CAATCGTTGC GTGCACCAAC 62506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCTCTAT ACTGAACCAA TTTCAGTGAA TGGTTCTTAT CAATCGTTGC GTGCACCAAC 404 TCTTAAAAGA TGTGCGAATT GCTCCGGGAC TGGAAAGGTA TGAAACATGA TCATCTCCCT 62446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAAAAGA TGTGCGAATT GCTCCGGGAC TGGAAAGGTA TGAAACATGA TCATCTCCCT 464 ACTTCATGCA CTCAACAGTC ATATTATATC AGTTCAATAA GTAGTAACTT TACAAGAAAA 62386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCATGCA CTCAACAGTC ATATTATATC AGTTCAATAA GTAGTAACTT TACAAGAAAA 524 AACAAATATC TGTGTCTGTT ACAATCCGTC CCATAGTCGA GCATCTCAAA AATGTGTGAC 62326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAATATC TGTGTCTGTT ACAATCCGTC CCATAGTCGA GCATCTCAAA AATGTGTGAC 584 CG 62324 || CG 586 hqPGS_C09HBa0168F14.1-2-_SGN-E270644+ (63345 63297,63161 63085,62874 62747,62602 62324) ******************************************************************************** EST sequence 153 +strand 539 n (File: SGN-E244663+) 1 TTTTGGTCAG ATGCAGTTTC AAGAAATCCA GGATAACATT AGGAGCAGGC GCAACAAAAT 61 CTTCCTCCTT ATGGAAGAGG TACGTCGGCT AAGAATACAA CAAAGGTTAA AGAACTCTAA 121 CACTAGAGGT GAGACCGGTG AAGATGAAAA TGAGATGCCA GATATCCCAT CAACGATACC 181 ATTTCTTCCT AACATGACTC CAAAGACACT AAAGCAGCTT TATCTTACAA GCTTTTCATT 241 TATAGCTGGG ATTATGGTCT TCGGTGGATT ACTTGCCCCA GTACTTGAGC TGAAATTAGG 301 TCTAGGAGGC ACCTCATACG AAGATTTTAT ACGTAACATG CATTTGCCTA TGCAATTGAG 361 CCAGGTCGAC CCCATAGTGG CGTCCTTTTC AGGCGGGGCA GTGGGAGTCA TCTCAGCCCT 421 CATGCTAATA GAAGCTAACA ATGTAGTCCA ACAAGAGAAG AAAAAGTGCA AATATTGCTA 481 TGGAAGTGGG TACTTGGCAT GTGCACGATG TTCAGCAAGC GGTAAATGCC TCTATACTG Predicted gene structure (within gDNA segment 63345 to 61942): Exon 1 63345 63297 ( 49 n); cDNA 235 283 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 63161 63085 ( 77 n); cDNA 284 360 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 (s: 1.00), Pa: 0.476 (s: 1.00) Exon 3 62874 62747 ( 128 n); cDNA 361 488 ( 128 n); score: 1.000 Intron 3 62746 62603 ( 144 n); Pd: 0.949 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 62602 62552 ( 51 n); cDNA 489 539 ( 51 n); score: 1.000 MATCH C09HBa0168F14.1-2- SGN-E244663+ 1.000 305 0.566 C PGS_C09HBa0168F14.1-2-_SGN-E244663+ (63345 63297,63161 63085,62874 62747,62602 62552) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 283 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 283 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 283 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 339 GCATTTGCCT ATGCAATTGA GGTATGTAAA CTGTAACCTG AAGTCCTGAA CTACATTTTC 63046 |||||||||| |||||||||| | GCATTTGCCT ATGCAATTGA G......... .......... .......... .......... 360 ATGTGTAGAA AAGGTCGGTG AATTGTTCCT CACAAACATC ATTAAATTGT GCACATTTGT 62986 .......... .......... .......... .......... .......... .......... 360 TCACTGCATT GTTCTTTACC TTCCCAAAAA AGGAGCGTCA CAAAATAGAA ACAGAAGACC 62926 .......... .......... .......... .......... .......... .......... 360 ACTTACGTCC TCGTGAATTT GGGTACCGAC TTCTTTTTCT CTTCTTCTCA GCCAGGTCGA 62866 ||||||||| .......... .......... .......... .......... .......... .CCAGGTCGA 369 CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 62806 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 429 AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTGG 62746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTG. 488 TATGTTCATG TGAAACTTAT TACATATCAT TGCACAATGT CTACACTATT GAACTCTCGA 62686 .......... .......... .......... .......... .......... .......... 488 CCAATAGTCA GTGTCTTTTT TTGATTATTT GAGTTCATGG TACTGACCAT AATCTCATTT 62626 .......... .......... .......... .......... .......... .......... 488 CATGGTCATT TGATTTGGTG TAGGGTACTT GGCATGTGCA CGATGTTCAG CAAGCGGTAA 62566 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GGTACTT GGCATGTGCA CGATGTTCAG CAAGCGGTAA 525 ATGCCTCTAT ACTG 62552 |||||||||| |||| ATGCCTCTAT ACTG 539 hqPGS_C09HBa0168F14.1-2-_SGN-E244663+ (63345 63297,63161 63085,62874 62747,62602 62552) ******************************************************************************** EST sequence 200 +strand 505 n (File: SGN-E300531+) 1 GAGACCGTTC AAGATTTTGG TCAGATGCAG TTTCAAGAAA TCCAGGATAA CATTAGGAGC 61 AGGCGCAACA AAATCTTCCT CCTTATGGAA GAGGTACGTC GGCTAAGAAT ACAACAAAGG 121 TTAAAGAACT CTAACACTAG AGGTGAGACC GGTGAAGATG AAAATGAGAT GCCAGATATC 181 CCATCAACGA TACCATTTCT TCCTAACATG ACTCCAAAGA CACTAAAGCA GCTTTATCTT 241 ACAAGCTTTT CATTTATAGC TGGGATTATG GTCTTCGGTG GATTACTTGC CCCAGTACTT 301 GAGCTGAAAT TAGGTCTAGG AGGCACCTCA TACGAAGATT TTATACGTAA CATGCATTTG 361 CCTATGCAAT TGAGCCAGGT CGACCCCATA GTGGCGTCCT TTTCAGGCGG TGCAGTGGGA 421 GTCATCTCAG CCCTCATGCT AATAGAAGCT AACAATGTAG TCCAACAAGA GAAGAGAAAG 481 TGCAAATATT GCTATGGAAG TGGGT Predicted gene structure (within gDNA segment 63345 to 62116): Exon 1 63345 63297 ( 49 n); cDNA 249 297 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 63161 63085 ( 77 n); cDNA 298 374 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 (s: 1.00), Pa: 0.476 (s: 0.98) Exon 3 62874 62747 ( 128 n); cDNA 375 502 ( 128 n); score: 0.984 MATCH C09HBa0168F14.1-2- SGN-E300531+ 0.990 254 0.503 C PGS_C09HBa0168F14.1-2-_SGN-E300531+ (63345 63297,63161 63085,62874 62747) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 297 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 297 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 297 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 353 GCATTTGCCT ATGCAATTGA GGTATGTAAA CTGTAACCTG AAGTCCTGAA CTACATTTTC 63046 |||||||||| |||||||||| | GCATTTGCCT ATGCAATTGA G......... .......... .......... .......... 374 ATGTGTAGAA AAGGTCGGTG AATTGTTCCT CACAAACATC ATTAAATTGT GCACATTTGT 62986 .......... .......... .......... .......... .......... .......... 374 TCACTGCATT GTTCTTTACC TTCCCAAAAA AGGAGCGTCA CAAAATAGAA ACAGAAGACC 62926 .......... .......... .......... .......... .......... .......... 374 ACTTACGTCC TCGTGAATTT GGGTACCGAC TTCTTTTTCT CTTCTTCTCA GCCAGGTCGA 62866 ||||||||| .......... .......... .......... .......... .......... .CCAGGTCGA 383 CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 62806 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| CCCCATAGTG GCGTCCTTTT CAGGCGGTGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 443 AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAAAAAGTGC AAATATTGCT ATGGAAGTG 62747 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| AGAAGCTAAC AATGTAGTCC AACAAGAGAA GAGAAAGTGC AAATATTGCT ATGGAAGTG 502 hqPGS_C09HBa0168F14.1-2-_SGN-E300531+ (63345 63297,63161 63085,62874 62747) ******************************************************************************** EST sequence 211 +strand 691 n (File: SGN-E377748+) 1 TTTTGTTTCT CAAAAGGGTG AAGATGGGTT CTATCTTTTT TTGTTTTCAT CCATTAATAC 61 ATACTTCTAA GCTTGATTCC TCAAAGACCC ATGTTTTGTT TAGCTCTTCT TTGAGTTCAA 121 CTCTAAAAAA CCAATCTTTA TTGAAATACA CAGCAAGAAC TCAGTTTGTT TGTTCTTCTT 181 CATCTAAGGA TGGCTTTGAG TCTTCTGGTG ATAGTAATAC AAGTAATTTC TGCATCATTG 241 AAGGACCCGA GACCGTTCAA GATTTTGGTC AGATGCAGTT TCAAGAAATC CAGGATAACA 301 TTAGGAGCAG GCGCAACAAA ATCTTCCTCC TTATGGAAGA GGTACGTCGG CTAAGAATAC 361 AACAAAGGTT AAAGAACTCT AACACTAGAG GTGAGACCGG TGAAGATGAA AATGAGATGC 421 CAGATATCCC ATCAACGATA CCATTTCTTC CTAACATGAC TCCAAAGACA CTAAAGCAGC 481 TTTATCTTAC AAGCTTTTCA TTTATAGCTG GGATTATGGT CTTCGGTGGA TTACTTGCCC 541 CAGTACTTGA GCTGAAATTA GGTCTAGGAG GCACCTCATA CGAAGATTTT ATACGTAACA 601 TGCATTTGCC TATGCAATTG AGCCAGGTCG ACCCCATAGT GGCGTCCTTT TCAGGCGGGG 661 CAGTGGGAGT CATCTTAACC CTTATGCTAA T Predicted gene structure (within gDNA segment 63345 to 62052): Exon 1 63345 63297 ( 49 n); cDNA 497 545 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 63161 63085 ( 77 n); cDNA 546 622 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 (s: 1.00), Pa: 0.476 (s: 1.00) Exon 3 62874 62806 ( 69 n); cDNA 623 691 ( 69 n); score: 0.957 PPA cDNA 47 36 MATCH C09HBa0168F14.1-2- SGN-E377748+ 0.979 195 0.282 C PGS_C09HBa0168F14.1-2-_SGN-E377748+ (63345 63297,63161 63085,62874 62806) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 545 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 545 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 545 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 601 GCATTTGCCT ATGCAATTGA GGTATGTAAA CTGTAACCTG AAGTCCTGAA CTACATTTTC 63046 |||||||||| |||||||||| | GCATTTGCCT ATGCAATTGA G......... .......... .......... .......... 622 ATGTGTAGAA AAGGTCGGTG AATTGTTCCT CACAAACATC ATTAAATTGT GCACATTTGT 62986 .......... .......... .......... .......... .......... .......... 622 TCACTGCATT GTTCTTTACC TTCCCAAAAA AGGAGCGTCA CAAAATAGAA ACAGAAGACC 62926 .......... .......... .......... .......... .......... .......... 622 ACTTACGTCC TCGTGAATTT GGGTACCGAC TTCTTTTTCT CTTCTTCTCA GCCAGGTCGA 62866 ||||||||| .......... .......... .......... .......... .......... .CCAGGTCGA 631 CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTCAGCCC TCATGCTAAT 62806 |||||||||| |||||||||| |||||||||| |||||||||| |||| | ||| | |||||||| CCCCATAGTG GCGTCCTTTT CAGGCGGGGC AGTGGGAGTC ATCTTAACCC TTATGCTAAT 691 hqPGS_C09HBa0168F14.1-2-_SGN-E377748+ (63345 63297,63161 63085,62874 62806) ******************************************************************************** EST sequence 201 +strand 615 n (File: SGN-E236580+) 1 TTTTGTTTCT CAAAAGGGTG AAGATGGGTT CTATCTTTTT TTGTTTTCAT CCATTAATAC 61 ATACTTCTAA GCTTGATTCC TCAAAGACCC ATGTTTTGTT TAGCTCTTCT TTGAGTTCAA 121 CTCTAAAAAA CCAATCTTTA TTGAAATACA CAGCAAGAAC TCAGTTTGTT TGTTCTTCTT 181 CATCTAAGGA TGGCTTTGAG TCTTCTGGTG ATAGTAATAC AAGTAATTTC TGCATCATTG 241 AAGGACCCGA GACCGTTCAA GATTTTGGTC AGATGCAGTT TCAAGAAATC CAGGATAACA 301 TTAGGAGCAG GCGCAACAAA ATCTTCCTCC TTATGGAAGA GGTACGTCGG CTAAGAATAC 361 AACAAAGGTT AAAGAACTCT AACACTAGAG GTGAGACCGG TGAAGATGAA AATGAGATGC 421 CAGATATCCC ATCAACGATA CCATTTCTTC CTAACATGAC TCCAAAGACA CTAAAGCAGC 481 TTTATCTTAC AAGCTTTTCA TTTATAGCTG GGATTATGGT CTTCGGTGGA TTACTTGCCC 541 CAGTACTTGA GCTGAAATTA GGTCTAGGAG GCACCTCATA CGAAGATTTT ATACGTAACA 601 TGCATTTGCC TATGC Predicted gene structure (within gDNA segment 63345 to 62482): Exon 1 63345 63297 ( 49 n); cDNA 497 545 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 63161 63092 ( 70 n); cDNA 546 615 ( 70 n); score: 1.000 PPA cDNA 47 36 MATCH C09HBa0168F14.1-2- SGN-E236580+ 1.000 119 0.193 C PGS_C09HBa0168F14.1-2-_SGN-E236580+ (63345 63297,63161 63092) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 545 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 545 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 545 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 601 GCATTTGCCT ATGC 63092 |||||||||| |||| GCATTTGCCT ATGC 615 hqPGS_C09HBa0168F14.1-2-_SGN-E236580+ (63345 63297,63161 63092) ******************************************************************************** EST sequence 227 +strand 595 n (File: SGN-E273561+) 1 GAAGATGGGT TCTATCTTTT TTTGTTTTCA TCCATTAATA CATACTTCTA AGCTTGATTC 61 CTCAAAGACC CATGTTTTGC TTAGCTCTTC TTTGAGTTCA ACTCTAAAAA ACCAATCTTT 121 ATTGAAATAC ACAGCAAGAA CTCAGTTTGT TTGTTCTTCT TCATCTAAGG ATGGCTTTGA 181 GTCTTCTGGT GATAGTAATA CAAGTAATTT CTGCATCATT GAAGGACCCG AGACCGTTCA 241 AGATTTTGGT CAGATGCAGT TTCAAGAAAT CCAGGATAAC ATTAGGAGCA GGCGCAACAA 301 AATCTTCCTC CTTATGGAAG AGGTACGTCG GCTAAGAATA CAACAAAGGT TAAAGAACTC 361 TAACACTAGA GGTGAGACCG GTGAAGATGA AAATGAGATG CCAGATATCC CATCAACGAT 421 ACCATTTCTT CCTAACATGA CTCCAAAGAC ACTAAAGCAG CTTTATCTTA CAAGCTTTTC 481 ATTTATAGCT GGGATTATGG TCTTCGGTGG ATTACTTGCC CCAGTACTTG AGCTGAAATT 541 AGGTCTATGA GGCACCTCAT ACGAAGATTT TATACGTAAC ATGCATTTGC CTATG Predicted gene structure (within gDNA segment 63345 to 62483): Exon 1 63345 63297 ( 49 n); cDNA 478 526 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 2 63161 63093 ( 69 n); cDNA 527 595 ( 69 n); score: 0.986 PPA cDNA 28 17 MATCH C09HBa0168F14.1-2- SGN-E273561+ 0.986 118 0.198 C PGS_C09HBa0168F14.1-2-_SGN-E273561+ (63345 63297,63161 63093) Alignment (genomic DNA sequence = upper lines): TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTAG TAAGCTCATG 63286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCATTTATA GCTGGGATTA TGGTCTTCGG TGGATTACTT GCCCCAGTA. .......... 526 AACTCAATTA TTTCCTTATC CTTATTCTGG TTCTGCATTA TGCATAACGG TACTATGGAG 63226 .......... .......... .......... .......... .......... .......... 526 TTATTTATTT CCCTATTCTT GAATGATGAA GTCTTTCGAC TATTGTAACT CTTTGATATT 63166 .......... .......... .......... .......... .......... .......... 526 GCAGCTTGAG CTGAAATTAG GTCTAGGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 63106 |||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ....CTTGAG CTGAAATTAG GTCTATGAGG CACCTCATAC GAAGATTTTA TACGTAACAT 582 GCATTTGCCT ATG 63093 |||||||||| ||| GCATTTGCCT ATG 595 hqPGS_C09HBa0168F14.1-2-_SGN-E273561+ (63345 63297,63161 63093) Total number of EST alignments reported: 256 ________________________________________________________________________________ Predicted gene locations (14) in segment 1 to 63345: PGL 1 (+ strand): 2608 5384 AGS-1 (2608 3382,3444 3488,3521 3575,3668 3927,3958 4766,5198 5228) SCR (e 0.806 d 0.000 a 0.000,e 0.678 d 0.000 a 0.000,e 0.664 d 0.000 a 0.000,e 0.638 d 0.000 a 0.000,e 0.818 d 0.000 a 0.000,e 0.710) Exon 1 2608 3382 ( 775 n); score: 0.806 Intron 1 3383 3443 ( 61 n); Pd: 0.000 Pa: 0.000 Exon 2 3444 3488 ( 45 n); score: 0.678 Intron 2 3489 3520 ( 32 n); Pd: 0.000 Pa: 0.000 Exon 3 3521 3575 ( 55 n); score: 0.664 Intron 3 3576 3667 ( 92 n); Pd: 0.000 Pa: 0.000 Exon 4 3668 3927 ( 260 n); score: 0.638 Intron 4 3928 3957 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 5 3958 4766 ( 809 n); score: 0.818 Intron 5 4767 5197 ( 431 n); Pd: 0.000 Pa: 0.000 Exon 6 5198 5228 ( 31 n); score: 0.710 PGS (2608 3020) SGN-E370357+ PGS (2613 3104) SGN-E351546- PGS (2613 3104) SGN-E356206- PGS (2613 3104) SGN-E356696- PGS (2613 3023) SGN-E392027+ PGS (2754 3011) SGN-E373117- PGS (2754 2975) SGN-E298638- PGS (2763 3022) SGN-E336814- PGS (2763 3011) SGN-E373116+ PGS (2781 3379) SGN-E546506+ PGS (2787 3033) SGN-E222578+ PGS (2792 2945) SGN-E352844- PGS (3082 3335) SGN-E357033+ PGS (3086 3382,3444 3488,3521 3575,3668 3927,3958 4070) SGN-E349977- PGS (4069 4717) SGN-E349296- PGS (4206 4766,5198 5228) SGN-E550212+ PGS (4206 4766,5198 5228) SGN-E550065+ PGS (4206 4766,5198 5228) SGN-E550201+ PGS (4206 4766,5198 5228) SGN-E550207+ PGS (4206 4766,5198 5228) SGN-E550335+ PGS (4206 4766,5198 5228) SGN-E550484+ PGS (4206 4766,5198 5228) SGN-E550211+ PGS (4206 4766,5198 5228) SGN-E550464+ PGS (4206 4766,5198 5228) SGN-E549941+ PGS (4206 4766,5198 5228) SGN-E550025+ PGS (4206 4766,5198 5228) SGN-E396039+ PGS (4206 4766,5198 5228) SGN-E390013+ PGS (4206 4766,5198 5228) SGN-E396056+ PGS (4206 4766,5198 5228) SGN-E377133+ PGS (4206 4766,5198 5228) SGN-E550127- PGS (4206 4766,5198 5228) SGN-E550140- PGS (4206 4771) SGN-E389834+ PGS (4206 4766) SGN-E374999+ PGS (4206 4766) SGN-E396054+ PGS (4206 4766) SGN-E396058+ PGS (4206 4766) SGN-E389553- PGS (4206 4765) SGN-E231589+ PGS (4206 4752) SGN-E241959+ PGS (4206 4679) SGN-E236652+ PGS (4206 4660) SGN-E396070+ PGS (4218 4766,5198 5228) SGN-E550322+ PGS (4243 4766,5198 5228) SGN-E396057- PGS (4259 4766,5198 5228) SGN-E377132- PGS (4275 4766,5198 5228) SGN-E396055- PGS (4277 4766,5198 5228) SGN-E398551- PGS (4287 4766,5198 5228) SGN-E396038- PGS (4394 4766,5198 5228) SGN-E396069- PGS (4399 4766,5198 5228) SGN-E374998- 3-phase translation of AGS-1 (+strand): . . . . . . 2608 TTTAATGTCTCGATCCAAATTGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAG F N V S I Q I G P R L A P T L T L L C E L M S R S K L G R D W H P H L P S Y V S - C L D P N W A A T G T H T Y P P M - . . . . . . 2668 CGAACCAACCAATCTAAACCTCAACATTTCAATATAATATCAACAGGAAGTAATGCGGAA R T N Q S K P Q H F N I I S T G S N A E E P T N L N L N I S I - Y Q Q E V M R K A N Q P I - T S T F Q Y N I N R K - C G . . . . . . 2728 GACTTAAACTCATTAATAAAAACCAATTCAATAACTTCTAAAAACTCAACAACTATTATT D L N S L I K T N S I T S K N S T T I I T - T H - - K P I Q - L L K T Q Q L L L R L K L I N K N Q F N N F - K L N N Y Y . . . . . . 2788 ATTCTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAAATTACTAATCT I L P K I W K S S S Q E H L S S N Y - S F F P K S G S H H H K N I Y P Q I T N L Y S S Q N L E V I I T R T S I L K L L I . . . . . . 2848 AAGAGTATCTAAGAAGCTAAAATACATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCAT K S I - E A K I H K K L V H A G T S R H R V S K K L K Y I K S - S M P E L Q G I - E Y L R S - N T - K A S P C R N F K A . . . . . . 2908 CAAGACATGAGGAGGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGA Q D M R R K I Q S K L E A L A H P E I R K T - G G R S S P S - K R - L T L K S D S R H E E E D P V Q A R S V S S P - N P . . . . . . 2968 TGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAGACGACGGCACGTTTGCTGCACT C N E D W L E L R L S - R R R H V C C T V M K T G - S C G - V E D D G T F A A L M - - R L A R V A V E L K T T A R L L H . . . . . . 3028 CCACAAATAACAAGGAAAGAAACATACAAGTAGGGGTCAGTACAAAACACGGGTACTGAG P Q I T R K E T Y K - G S V Q N T G T E H K - Q G K K H T S R G Q Y K T R V L S S T N N K E R N I Q V G V S T K H G Y - . . . . . . 3088 TAGATATCATCGGACAACTCAAAATAGAAACAATATATATCAGATAATATCATAAATCAA - I S S D N S K - K Q Y I S D N I I N Q R Y H R T T Q N R N N I Y Q I I S - I N V D I I G Q L K I E T I Y I R - Y H K S . . . . . . 3148 CTACAATACTCAATCTGTAGCAACACCATGTACAAGAATCTTTGATAAATAACGTCAAGT L Q Y S I C S N T M Y K N L - - I T S S Y N T Q S V A T P C T R I F D K - R Q V T T I L N L - Q H H V Q E S L I N N V K . . . . . . 3208 ACATTCATGAGGACTCAAGCCTCCATATCATACTCATTTGGGAATTAGGTTCATTAGATT T F M R T Q A S I S Y S F G N - V H - I H S - G L K P P Y H T H L G I R F I R L Y I H E D S S L H I I L I W E L G S L D . . . . . . 3268 GAGTATATTAACATCTTTCAAGATTCATCACCTTTATTCTTGTGTCGGTACGTGACACTC E Y I N I F Q D S S P L F L C R Y V T L S I L T S F K I H H L Y S C V G T - H S - V Y - H L S R F I T F I L V S V R D T . . . . . . : 3328 CGCTCCCTTACTACTATGTGTCGGAACGTGACACTCCGATCCCCTAGTTCTACGT : ATTCT R S L T T M C R N V T L R S P S S T : Y S A P L L L C V G T - H S D P L V L R : I L P L P Y Y Y V S E R D T P I P - F Y V : F . . . . : . . 3449 ACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTG : GTGTCGGTTCGTGACACCCG T C R F V T P D P L I L R : G V G S - H P R V G S - H P I P - F Y V : V S V R D T R Y V S V R D T R S P N S T W : C R F V T P . . . . : . . 3541 ATCCCCTAATTTTACGTGTCGATTCGTGACACCCG : TCCGTGACACCCGATCCCCTAATTC I P - F Y V S I R D T R : P - H P I P - F S P N F T C R F V T P : V R D T R S P N S D P L I L R V D S - H P : S V T P D P L I . . . . . . 3693 TACGTGTCGGTCCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGAT Y V S V R D T R S P N S T C R F V T P D T C R S V T P D P L I L R V G S - H P I L R V G P - H P I P - F Y V S V R D T R . . . . . . 3753 CCCCTAATTCTACGTGTCGGTTCGTGACACCTGATCCACTAATCTCATTCTATTAATTCA P L I L R V G S - H L I H - S H S I N S P - F Y V S V R D T - S T N L I L L I H S P N S T C R F V T P D P L I S F Y - F . . . . . . 3813 TCAAGCCTTCTTTTATACCAAGGCATCATCAATCTCATCAATCTCATCACTTTAGTTCAT S S L L L Y Q G I I N L I N L I T L V H Q A F F Y T K A S S I S S I S S L - F I I K P S F I P R H H Q S H Q S H H F S S . . . . . . : 3873 CAAGCCTTCTTTTATACCAAGGCATCATCAATCTCATTACTTTAGTTCATCGAAC : AAGGT Q A F F Y T K A S S I S L L - F I E : Q G K P S F I P R H H Q S H Y F S S S N : K V S S L L L Y Q G I I N L I T L V H R T : R . . . . . . 3963 TTTTTTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTTCATCACAATTATAT F F F Q D L G F N S F I M L I S S Q L Y F F F K I W D S I A S S C L F H H N Y I F F F S R F G I Q - L H H A Y F I T I I . . . . . . 4023 AATCACATTCATGCAAGCATACAATTAAGCATATAGAAGACTTTACAATACAACCCAACA N H I H A S I Q L S I - K T L Q Y N P T I T F M Q A Y N - A Y R R L Y N T T Q H - S H S C K H T I K H I E D F T I Q P N . . . . . . 4083 CATATCATTCGCTATCAAGAGTTAACTACGAATAGTATAAAACCATAACCTACCTCCACC H I I R Y Q E L T T N S I K P - P T S T I S F A I K S - L R I V - N H N L P P P T Y H S L S R V N Y E - Y K T I T Y L H . . . . . . 4143 GAAGAATTTCGATCAAGCAAGCAATTTCCCAAGCCTTTTTCGTTTTCTCGTTTCTCCTCT E E F R S S K Q F P K P F S F S R F S S K N F D Q A S N F P S L F R F L V S P L R R I S I K Q A I S Q A F F V F S F L L . . . . . . 4203 TTGTCGTCGATCCTCTCTCTCTCTTCTTGTTCTTTCTATTTTCTTTATTCAAATCCTCTT L S S I L S L S S C S F Y F L Y S N P L C R R S S L S L L V L S I F F I Q I L F F V V D P L S L F L F F L F S L F K S S . . . . . . 4263 TCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATGGCAATAATAACTCACTAGTT S F T L I S I - L R I K D G N N N S L V L L P - L A Y N - E - K M A I I T H - F F F Y P N - H I I K N K R W Q - - L T S . . . . . . 4323 TACTCAAGGTTACCTCTTTTAGCCCCCAAGTAATTGAGTTATTAATATTAAACCACTAAC Y S R L P L L A P K - L S Y - Y - T T N T Q G Y L F - P P S N - V I N I K P L T L L K V T S F S P Q V I E L L I L N H - . . . . . . 4383 TTTATAATTATAAGTCGGAATAGTCAAAAACGTCCCTTAAAATATTAAAGAAATCCGACT F I I I S R N S Q K R P L K Y - R N P T L - L - V G I V K N V P - N I K E I R L L Y N Y K S E - S K T S L K I L K K S D . . . . . . 4443 CCGCCTGGGATTACGCAGCCTGTGACGGGCCGTCGTGCCTGCGACGGTCCGTCCTGCTGC P P G I T Q P V T G R R A C D G P S C C R L G L R S L - R A V V P A T V R P A A S A W D Y A A C D G P S C L R R S V L L . . . . . . 4503 TCCGTCACAGAGTTCAGAGACTCAATTCTCTGAAGAGTCTGTGACAGTCCGTCACGCCTG S V T E F R D S I L - R V C D S P S R L P S Q S S E T Q F S E E S V T V R H A C L R H R V Q R L N S L K S L - Q S V T P . . . . . . 4563 TGACGGTCCATCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTCAGTACCCATTTT - R S I L P F R Y E V Q R V D F S T H F D G P S C H S V T K F R E S I S V P I F V T V H P A I P L R S S E S R F Q Y P F . . . . . . 4623 TCAGAATTTCTAAGTGTTTTGAAACGAGACACTCTCGACGGTCCGTCGTGCCCATGACGG S E F L S V L K R D T L D G P S C P - R Q N F - V F - N E T L S T V R R A H D G F R I S K C F E T R H S R R S V V P M T . . . . . . 4683 TCCGTCGTGGGTTCCGTCATCTCAGCCTGTTTTTCTATAAATAAAATCTGCTGCTCAAAA S V V G S V I S A C F S I N K I C C S K P S W V P S S Q P V F L - I K S A A Q N V R R G F R H L S L F F Y K - N L L L K . . . : . . . 4743 TGACTAAACAGGTCGTTACATTTA : TTTTTTTCTTTTTTAAATTTTATAAATGTTT - L N R S L H L : F F S F L N F I N V D - T G R Y I Y : F F L F - I L - M F M T K Q V V T F : I F F F F K F Y K C Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-1_AGS-1_PPS_1 (2608 2844) (frame '1'; 234 bp, 78 residues) 1 FNVSIQIGPR LAPTLTLLCE RTNQSKPQHF NIISTGSNAE DLNSLIKTNS ITSKNSTTII 61 ILPKIWKSSS QEHLSSNY- AGS-2 (2611 2762,2793 3314,3348 3548,3903 3959) SCR (e 0.914 d 0.000 a 0.000,e 0.804 d 0.511 a 0.000,e 0.905 d 0.000 a 0.000,e 0.895) Exon 1 2611 2762 ( 152 n); score: 0.914 Intron 1 2763 2792 ( 30 n); Pd: 0.000 Pa: 0.000 Exon 2 2793 3314 ( 522 n); score: 0.804 Intron 2 3315 3347 ( 33 n); Pd: 0.511 Pa: 0.000 Exon 3 3348 3548 ( 201 n); score: 0.905 Intron 3 3549 3902 ( 354 n); Pd: 0.000 Pa: 0.000 Exon 4 3903 3959 ( 57 n); score: 0.895 PGS (2611 2762,2793 3022) SGN-E542084+ PGS (2888 3314,3348 3548,3903 3959) SGN-E241789+ 3-phase translation of AGS-2 (+strand): . . . . . . 2611 AATGTCTCGATCCAAATTGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGA N V S I Q I G P R L A P T L T L L C E R M S R S K L G R D W H P H L P S Y V S E C L D P N W A A T G T H T Y P P M - A . . . . . . 2671 ACCAACCAATCTAAACCTCAACATTTCAATATAATATCAACAGGAAGTAATGCGGAAGAC T N Q S K P Q H F N I I S T G S N A E D P T N L N L N I S I - Y Q Q E V M R K T N Q P I - T S T F Q Y N I N R K - C G R . . . . : . . 2731 TTAAACTCATTAATAAAAACCAATTCAATAAC : TCCCAAAATCTGGAAGTCATCATCACAA L N S L I K T N S I T : P K I W K S S S Q - T H - - K P I Q - : L P K S G S H H H K L K L I N K N Q F N N : S Q N L E V I I T . . . . . . 2821 GAACATCTATCCTCAAATTACTAATCTAAGAGTATCTAAGAAGCTAAAATACATAAAAAG E H L S S N Y - S K S I - E A K I H K K N I Y P Q I T N L R V S K K L K Y I K S R T S I L K L L I - E Y L R S - N T - K . . . . . . 2881 CTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAGGAGGAAGATCCAGTCCAAGCTA L V H A G T S R H Q D M R R K I Q S K L - S M P E L Q G I K T - G G R S S P S - A S P C R N F K A S R H E E E D P V Q A . . . . . . 2941 GAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTAGAGTTGCGGTTGAGT E A L A H P E I R C N E D W L E L R L S K R - L T L K S D V M K T G - S C G - V R S V S S P - N P M - - R L A R V A V E . . . . . . 3001 TGAAGACGACGGCACGTTTGCTGCACTCCACAAATAACAAGGAAAGAAACATACAAGTAG - R R R H V C C T P Q I T R K E T Y K - E D D G T F A A L H K - Q G K K H T S R L K T T A R L L H S T N N K E R N I Q V . . . . . . 3061 GGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGACAACTCAAAATAGAAACAA G S V Q N T G T E - I S S D N S K - K Q G Q Y K T R V L S R Y H R T T Q N R N N G V S T K H G Y - V D I I G Q L K I E T . . . . . . 3121 TATATATCAGATAATATCATAAATCAACTACAATACTCAATCTGTAGCAACACCATGTAC Y I S D N I I N Q L Q Y S I C S N T M Y I Y Q I I S - I N Y N T Q S V A T P C T I Y I R - Y H K S T T I L N L - Q H H V . . . . . . 3181 AAGAATCTTTGATAAATAACGTCAAGTACATTCATGAGGACTCAAGCCTCCATATCATAC K N L - - I T S S T F M R T Q A S I S Y R I F D K - R Q V H S - G L K P P Y H T Q E S L I N N V K Y I H E D S S L H I I . . . . . . 3241 TCATTTGGGAATTAGGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATCACCT S F G N - V H - I E Y I N I F Q D S S P H L G I R F I R L S I L T S F K I H H L L I W E L G S L D - V Y - H L S R F I T . . : . . . . 3301 TTATTCTTGTGTCG : TCGGAACGTGACACTCCGATCCCCTAGTTCTACGTGTCGGTTCGTG L F L C R : R N V T L R S P S S T C R F V Y S C V : V G T - H S D P L V L R V G S - F I L V S : S E R D T P I P - F Y V S V R . . . . . . 3394 ACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGATACCCGATCCCCTAATTCTACGTG T P D P L I L R V G S - Y P I P - F Y V H P I P - F Y V S V R D T R S P N S T C D T R S P N S T C R F V I P D P L I L R . . . . . . 3454 TCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCGATTCGTGACACCCGATCTCCTA S V R D T R S P N S T C R F V T P D L L R F V T P D P L I L R V D S - H P I S - V G S - H P I P - F Y V S I R D T R S P . . . . : . . 3514 ATTCTACGTGTCGGTTCGTGACACCCGATCCCCTA : ATCTCATTACTTTAGTTCATCGAAC I L R V G S - H P I P - : S H Y F S S S N F Y V S V R D T R S P : N L I T L V H R T N S T C R F V T P D P L : I S L L - F I E . . . . 3928 CTTCTTTTATACCAAGACATCATTATTAACAA L L L Y Q D I I I N F F Y T K T S L L T P S F I P R H H Y - Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-1_AGS-2_PPS_1 (2611 2762,2793 2844) (frame '1'; 201 bp, 67 residues) 1 NVSIQIGPRL APTLTLLCER TNQSKPQHFN IISTGSNAED LNSLIKTNSI TPKIWKSSSQ 61 EHLSSNY- AGS-3 (2784 2949,4849 4903,5341 5384) SCR (e 0.919 d 0.000 a 0.000,e 0.600 d 0.900 a 0.000,e 0.705) Exon 1 2784 2949 ( 166 n); score: 0.919 Intron 1 2950 4848 (1899 n); Pd: 0.000 Pa: 0.000 Exon 2 4849 4903 ( 55 n); score: 0.600 Intron 2 4904 5340 ( 437 n); Pd: 0.900 Pa: 0.000 Exon 3 5341 5384 ( 44 n); score: 0.705 PGS (2784 2949,4849 4903,5341 5384) SGN-E238551- PGS (2792 2949,4849 4903,5341 5384) SGN-E368629- 3-phase translation of AGS-3 (+strand): . . . . . . 2784 TATTATTCTTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAAATTACTA Y Y S S Q N L E V I I T R T S I L K L L I I L P K I W K S S S Q E H L S S N Y - L F F P K S G S H H H K N I Y P Q I T . . . . . . 2844 ATCTAAGAGTATCTAAGAAGCTAAAATACATAAAAAGCTAGTCCATGCCGGAACTTCAAG I - E Y L R S - N T - K A S P C R N F K S K S I - E A K I H K K L V H A G T S R N L R V S K K L K Y I K S - S M P E L Q . . . . . : . 2904 GCATCAAGACATGAGGAGGAAGATCCAGTCCAAGCTAGAAGCGTTA : TTTAATCACATAAA A S R H E E E D P V Q A R S V : I - S H K H Q D M R R K I Q S K L E A L : F N H I N G I K T - G G R S S P S - K R Y : L I T - . . . . . : . 4863 CTGATAAATATTCCAACCGTCTAATTATTATAATTTATAAT : ATATTTCATTTTTCGAGAG L I N I P T V - L L - F I I : Y F I F R E - - I F Q P S N Y Y N L - : Y I S F F E S T D K Y S N R L I I I I Y N : I F H F S R . . . 5360 TCGACAATTAAAATTTACACATAAA S T I K I Y T - R Q L K F T H K V D N - N L H I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (2930 3342,3579 3834,3894 4158) SCR (e 0.839 d 0.000 a 0.000,e 0.898 d 0.610 a 0.000,e 0.823) Exon 1 2930 3342 ( 413 n); score: 0.839 Intron 1 3343 3578 ( 236 n); Pd: 0.000 Pa: 0.000 Exon 2 3579 3834 ( 256 n); score: 0.898 Intron 2 3835 3893 ( 59 n); Pd: 0.610 Pa: 0.000 Exon 3 3894 4158 ( 265 n); score: 0.823 PGS (2930 3342,3579 3638) SGN-E246710- PGS (3171 3342,3579 3639) SGN-E391780- PGS (3576 3834,3894 4158) SGN-E347579- PGS (3696 3834,3894 4147) SGN-E357559- 3-phase translation of AGS-4 (+strand): . . . . . . 2930 AGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATCCGATGTAATGAAGACTGGCTAGAGT S P S - K R - L T L K S D V M K T G - S V Q A R S V S S P - N P M - - R L A R V S K L E A L A H P E I R C N E D W L E . . . . . . 2990 TGCGGTTGAGTTGAAGACGACGGCACGTTTGCTGCACTCCACAAATAACAAGGAAAGAAA C G - V E D D G T F A A L H K - Q G K K A V E L K T T A R L L H S T N N K E R N L R L S - R R R H V C C T P Q I T R K E . . . . . . 3050 CATACAAGTAGGGGTCAGTACAAAACACGGGTACTGAGTAGATATCATCGGACAACTCAA H T S R G Q Y K T R V L S R Y H R T T Q I Q V G V S T K H G Y - V D I I G Q L K T Y K - G S V Q N T G T E - I S S D N S . . . . . . 3110 AATAGAAACAATATATATCAGATAATATCATAAATCAACTACAATACTCAATCTGTAGCA N R N N I Y Q I I S - I N Y N T Q S V A I E T I Y I R - Y H K S T T I L N L - Q K - K Q Y I S D N I I N Q L Q Y S I C S . . . . . . 3170 ACACCATGTACAAGAATCTTTGATAAATAACGTCAAGTACATTCATGAGGACTCAAGCCT T P C T R I F D K - R Q V H S - G L K P H H V Q E S L I N N V K Y I H E D S S L N T M Y K N L - - I T S S T F M R T Q A . . . . . . 3230 CCATATCATACTCATTTGGGAATTAGGTTCATTAGATTGAGTATATTAACATCTTTCAAG P Y H T H L G I R F I R L S I L T S F K H I I L I W E L G S L D - V Y - H L S R S I S Y S F G N - V H - I E Y I N I F Q . . . . . . : 3290 ATTCATCACCTTTATTCTTGTGTCGGTACGTGACACTCCGCTCCCTTACTACT : CCCTAAT I H H L Y S C V G T - H S A P L L L : P N F I T F I L V S V R D T P L P Y Y : S L I D S S P L F L C R Y V T L R S L T T : P - . . . . . . 3586 TCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTACATGTCGGTTCGTGACACCCG S T C R F V T P D P L I L H V G S - H P L R V G S - H P I P - F Y M S V R D T R F Y V S V R D T R S P N S T C R F V T P . . . . . . 3646 ATCCCCTAATTCTACGTGTCAGTCCGTGACACCCGATCCCCTAATTCTACGTGTCGGTCC I P - F Y V S V R D T R S P N S T C R S S P N S T C Q S V T P D P L I L R V G P D P L I L R V S P - H P I P - F Y V S V . . . . . . 3706 GTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCTAC V T P D P L I L R V G S - H P I P - F Y - H P I P - F Y V S V R D T R S P N S T R D T R S P N S T C R F V T P D P L I L . . . . . . 3766 GTGTCGGTTCGTGACACCTGATCCACTAATCTCATTCTATTAATTCATCAAGCCTTCTTT V S V R D T - S T N L I L L I H Q A F F C R F V T P D P L I S F Y - F I K P S F R V G S - H L I H - S H S I N S S S L L . : . . . . . 3826 TATACCAAG : GCATCATCAATCTCATTACTTTAGTTCATCGAACCTTCTTTTATACCAAGA Y T K : A S S I S L L - F I E P S F I P R I P R : H H Q S H Y F S S S N L L L Y Q D L Y Q : G I I N L I T L V H R T F F Y T K . . . . . . 3945 CATCATTATTAACAAGGTTTTTTTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTT H H Y - Q G F F F Q D L G F N S F I M L I I I N K V F F F K I W D S I A S S C L T S L L T R F F F S R F G I Q - L H H A . . . . . . 4005 ATTTCATCACAATTATATAATCACATTCATGCAAGCATACAATTAAGCATATAGAAGACT I S S Q L Y N H I H A S I Q L S I - K T F H H N Y I I T F M Q A Y N - A Y R R L Y F I T I I - S H S C K H T I K H I E D . . . . . . 4065 TTACAATACAACCCAACACATATCATTCGCTATCAAGAGTTAACTACGAATAGTATAAAA L Q Y N P T H I I R Y Q E L T T N S I K Y N T T Q H I S F A I K S - L R I V - N F T I Q P N T Y H S L S R V N Y E - Y K . . . . 4125 CCATAACCTACCTCCACCGAAGAATTTCGATCAA P - P T S T E E F R S H N L P P P K N F D Q T I T Y L H R R I S I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (3252 3335,3468 3834,3894 4147) SCR (e 0.827 d 0.000 a 0.000,e 0.862 d 0.610 a 0.000,e 0.805) Exon 1 3252 3335 ( 84 n); score: 0.827 Intron 1 3336 3467 ( 132 n); Pd: 0.000 Pa: 0.000 Exon 2 3468 3834 ( 367 n); score: 0.862 Intron 2 3835 3893 ( 59 n); Pd: 0.610 Pa: 0.000 Exon 3 3894 4147 ( 254 n); score: 0.805 PGS (3252 3335,3468 3834,3894 4147) SGN-E349726- 3-phase translation of AGS-5 (+strand): . . . . . . 3252 TTAGGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATCACCTTTATTCTTGTG L G S L D - V Y - H L S R F I T F I L V - V H - I E Y I N I F Q D S S P L F L C R F I R L S I L T S F K I H H L Y S C . . . : . . . 3312 TCGGTACGTGACACTCCGCTCCCT : CCGATCCCCTAATTCTACGTGTCGATTCGTGACACC S V R D T P L P : P I P - F Y V S I R D T R Y V T L R S L : R S P N S T C R F V T P V G T - H S A P : S D P L I L R V D S - H . . . . . . 3504 CGATCTCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTTTACGTGTCGAT R S P N S T C R F V T P D P L I L R V D D L L I L R V G S - H P I P - F Y V S I P I S - F Y V S V R D T R S P N F T C R . . . . . . 3564 TCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCCGATCCCCTAATTCT S - H P I P - F Y V S V R D T R S P N S R D T R S P N S T C R F V T P D P L I L F V T P D P L I L R V G S - H P I P - F . . . . . . 3624 ACATGTCGGTTCGTGACACCCGATCCCCTAATTCTACGTGTCAGTCCGTGACACCCGATC T C R F V T P D P L I L R V S P - H P I H V G S - H P I P - F Y V S V R D T R S Y M S V R D T R S P N S T C Q S V T P D . . . . . . 3684 CCCTAATTCTACGTGTCGGTCCGTGACACCCGATCCCCTAATTCTACGTGTCGGTTCGTG P - F Y V S V R D T R S P N S T C R F V P N S T C R S V T P D P L I L R V G S - P L I L R V G P - H P I P - F Y V S V R . . . . . . 3744 ACACCCGATCCCCTAATTCTACGTGTCGGTTCGTGACACCTGATCCACTAATCTCATTCT T P D P L I L R V G S - H L I H - S H S H P I P - F Y V S V R D T - S T N L I L D T R S P N S T C R F V T P D P L I S F . . . . : . . 3804 ATTAATTCATCAAGCCTTCTTTTATACCAAG : GCATCATCAATCTCATTACTTTAGTTCAT I N S S S L L L Y Q : G I I N L I T L V H L I H Q A F F Y T K : A S S I S L L - F I Y - F I K P S F I P R : H H Q S H Y F S S . . . . . . 3923 CGAACCTTCTTTTATACCAAGACATCATTATTAACAAGGTTTTTTTTTTCAAGATTTGGG R T F F Y T K T S L L T R F F F S R F G E P S F I P R H H Y - Q G F F F Q D L G S N L L L Y Q D I I I N K V F F F K I W . . . . . . 3983 ATTCAATAGCTTCATCATGCTTATTTCATCACAATTATATAATCACATTCATGCAAGCAT I Q - L H H A Y F I T I I - S H S C K H F N S F I M L I S S Q L Y N H I H A S I D S I A S S C L F H H N Y I I T F M Q A . . . . . . 4043 ACAATTAAGCATATAGAAGACTTTACAATACAACCCAACACATATCATTCGCTATCAAGA T I K H I E D F T I Q P N T Y H S L S R Q L S I - K T L Q Y N P T H I I R Y Q E Y N - A Y R R L Y N T T Q H I S F A I K . . . . . 4103 GTTAACTACGAATAGTATAAAACCATAACCTACCTCCACCGAAGA V N Y E - Y K T I T Y L H R R L T T N S I K P - P T S T E S - L R I V - N H N L P P P K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 12237 7536 AGS-1 (12237 11423,9596 9428,8061 7536) SCR (e 1.000 d 0.987 a 0.968,e 1.000 d 0.997 a 0.975,e 0.984) Exon 1 12237 11423 ( 815 n); score: 1.000 Intron 1 11422 9597 (1826 n); Pd: 0.987 Pa: 0.968 Exon 2 9596 9428 ( 169 n); score: 1.000 Intron 2 9427 8062 (1366 n); Pd: 0.997 Pa: 0.975 Exon 3 8061 7536 ( 526 n); score: 0.984 PGS (7948 7536) SGN-E290904+ PGS (11520 11423,9596 9428,8061 7619) SGN-E353825+ PGS (11684 11423,9596 9428,8061 7941) SGN-E249848+ PGS (11907 11423,9596 9428) SGN-E327500+ PGS (11747 11521) SGN-E268607+ PGS (11747 11529) SGN-E370074+ PGS (12237 11605) SGN-E311377+ PGS (12226 11760) SGN-E269714+ PGS (12229 11762) SGN-E208592+ 3-phase translation of AGS-1 (-strand): . . . . . . 12237 TCTCAGTAATGGCTGAGCAAGGAAGCGCCGCCGCAGCTCCGTCGTCTGAGTTGAAAAGTC S Q - W L S K E A P P Q L R R L S - K V L S N G - A R K R R R S S V V - V E K S S V M A E Q G S A A A A P S S E L K S . . . . . . 12177 GGCCGGCCGGAAGCACCGAGCACAGCTGGTGCAAGGCGGTTCCCGGTGGCACAGGTATAA G R P E A P S T A G A R R F P V A Q V - A G R K H R A Q L V Q G G S R W H R Y N R P A G S T E H S W C K A V P G G T G I . . . . . . 12117 CAGTCTTAGCTCTACTCTTGTCAAAACCACCAGACATTTCACTTCTCCAAAATGCCCTTC Q S - L Y S C Q N H Q T F H F S K M P F S L S S T L V K T T R H F T S P K C P S T V L A L L L S K P P D I S L L Q N A L . . . . . . 12057 ACAAACTCCAAAATTCCAATCCTATCCTCAAATCTCAACTCCATTACGAATCAAGCACAA T N S K I P I L S S N L N S I T N Q A Q Q T P K F Q S Y P Q I S T P L R I K H K H K L Q N S N P I L K S Q L H Y E S S T . . . . . . 11997 ATTCCTACTCTTACATCATTCCCTCCACTTCTCATCTTCAAATCCAGCCGTTCGATCTCT I P T L T S F P P L L I F K S S R S I S F L L L H H S L H F S S S N P A V R S L N S Y S Y I I P S T S H L Q I Q P F D L . . . . . . 11937 CATCAACGGTTCAGATTCTCCGACGCCTCAAAACCTCCGATCTCACCTCCGTCTCCGATT H Q R F R F S D A S K P P I S P P S P I I N G S D S P T P Q N L R S H L R L R F S S T V Q I L R R L K T S D L T S V S D . . . . . . 11877 TTCATCTCATCCTCGAACACGAAATCAACCACAACTCATGGATGAACACCGGCACTTCAT F I S S S N T K S T T T H G - T P A L H S S H P R T R N Q P Q L M D E H R H F I F H L I L E H E I N H N S W M N T G T S . . . . . . 11817 CAGATTCCGACACGGATATCTTCTTCGCCAGCATTTATCAATTAGAAAACGAAAAATCGG Q I P T R I S S S P A F I N - K T K N R R F R H G Y L L R Q H L S I R K R K I G S D S D T D I F F A S I Y Q L E N E K S . . . . . . 11757 TGTTCGCTTTAAGGATTCATACATCGGTGTGTGATCGGGCGGCTGCATTGGCGGTGCTGA C S L - G F I H R C V I G R L H W R C - V R F K D S Y I G V - S G G C I G G A E V F A L R I H T S V C D R A A A L A V L . . . . . . 11697 AGAAGTTATTGAAGCTGGTGAGTTGTGAGAAGGAAGATGAAGAAGGGACAGAATTGGAAA R S Y - S W - V V R R K M K K G Q N W K E V I E A G E L - E G R - R R D R I G N K K L L K L V S C E K E D E E G T E L E . . . . . . 11637 TATTGAAAAAGATGGAGGTTGGTTTGGGGATTGAAGAGTATATTCCAGATGGTAAAGCGA Y - K R W R L V W G L K S I F Q M V K R I E K D G G W F G D - R V Y S R W - S E I L K K M E V G L G I E E Y I P D G K A . . . . . . 11577 GTAAACCATTTTGGGCGCGTGGGATTGATATGGTGGGGTATGGTTTGAATTCATTGAGAT V N H F G R V G L I W W G M V - I H - D - T I L G A W D - Y G G V W F E F I E I S K P F W A R G I D M V G Y G L N S L R . . . . . . 11517 TTTGTAATTTGAAGTTTATGGATTCGGAATCAACGAGAGGATCACAAGTTGTGAAATTGC F V I - S L W I R N Q R E D H K L - N C L - F E V Y G F G I N E R I T S C E I A F C N L K F M D S E S T R G S Q V V K L . . . . : . . 11457 AGTTGAATAAACAAGAGACTGATCACATTCTTGAT : GGCTGTAAAACGAGAGGTATAAAAC S - I N K R L I T F L M : A V K R E V - N V E - T R D - S H S - : W L - N E R Y K T Q L N K Q E T D H I L D : G C K T R G I K . . . . . . 9571 TGTGTGGACTATTGGCTGCTGCTGGATTAATTGCAGCTCATTCCTTAAAAGGCCTAAAGG C V D Y W L L L D - L Q L I P - K A - R V W T I G C C W I N C S S F L K R P K G L C G L L A A A G L I A A H S L K G L K . . . . . . 9511 AGAATCAATGGGAGAAGTATGCAATTGTAACCCTTATTAACTGCCGTTCAATTCTTGATC R I N G R S M Q L - P L L T A V Q F L I E S M G E V C N C N P Y - L P F N S - S E N Q W E K Y A I V T L I N C R S I L D . . . : . . . 9451 CAGTGCTTAGCCCTGATTTTCCAG : GCTTTTATCATTCTGCCATCCTCAACACGCATGACG Q C L A L I F Q : A F I I L P S S T R M T S A - P - F S R : L L S F C H P Q H A - R P V L S P D F P : G F Y H S A I L N T H D . . . . . . 8025 TTAAGGGAGGAGATGACTTATGGGAGCTAGCAAAGAGAAGTTACACATCTTTTATCAACG L R E E M T Y G S - Q R E V T H L L S T - G R R - L M G A S K E K L H I F Y Q R V K G G D D L W E L A K R S Y T S F I N . . . . . . 7965 CCAAGAACAATAACAAGCATTTCACAGACATGGGAGACCTGAATTTCCTCATGTGCAGGG P R T I T S I S Q T W E T - I S S C A G Q E Q - Q A F H R H G R P E F P H V Q G A K N N N K H F T D M G D L N F L M C R . . . . . . 7905 CCATTGATAATCCCGGCTTAACTCCATCCTCTTCACTTAGAACTTCTCTGATCTCCGTGT P L I I P A - L H P L H L E L L - S P C H - - S R L N S I L F T - N F S D L R V A I D N P G L T P S S S L R T S L I S V . . . . . . 7845 TTGAAGACACTGTGATCGATACCTCCAGCACAATGCATCAAGAAATCGGATTAGAAGACT L K T L - S I P P A Q C I K K S D - K T - R H C D R Y L Q H N A S R N R I R R L F E D T V I D T S S T M H Q E I G L E D . . . . . . 7785 TCATCGGGTGTGCATCCGTGCATGGGGTAGGCCCTTCTATTGCCATATTCGACACAATCA S S G V H P C M G - A L L L P Y S T Q S H R V C I R A W G R P F Y C H I R H N Q F I G C A S V H G V G P S I A I F D T I . . . . . . 7725 GGGACGGACATTTGGATTGTGCATGTGTTTATCCCTTCCCCTTGCATACTAGAGAGCAAA G T D I W I V H V F I P S P C I L E S K G R T F G L C M C L S L P L A Y - R A N R D G H L D C A C V Y P F P L H T R E Q . . . . . . 7665 TACAGGAGCTCATTGGTGAAATGAAAAAAATCCTTATTGACTGCTAGTATATTACTAAAA Y R S S L V K - K K S L L T A S I L L K T G A H W - N E K N P Y - L L V Y Y - N I Q E L I G E M K K I L I D C - Y I T K . . . . . . 7605 CAAACACTATATTTTCCCACTCATCATGTTCAATGAAAATGCAGTAAGTTGTTTGTTTTT Q T L Y F P T H H V Q - K C S K L F V F K H Y I F P L I M F N E N A V S C L F L T N T I F S H S S C S M K M Q - V V C F . 7545 GACATCAAAA D I K T S K - H Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-2_AGS-1_PPS_1 (12235 11423,9596 9428,8061 7619) (frame '0'; 1422 bp, 474 residues) 1 SVMAEQGSAA AAPSSELKSR PAGSTEHSWC KAVPGGTGIT VLALLLSKPP DISLLQNALH 61 KLQNSNPILK SQLHYESSTN SYSYIIPSTS HLQIQPFDLS STVQILRRLK TSDLTSVSDF 121 HLILEHEINH NSWMNTGTSS DSDTDIFFAS IYQLENEKSV FALRIHTSVC DRAAALAVLK 181 KLLKLVSCEK EDEEGTELEI LKKMEVGLGI EEYIPDGKAS KPFWARGIDM VGYGLNSLRF 241 CNLKFMDSES TRGSQVVKLQ LNKQETDHIL DGCKTRGIKL CGLLAAAGLI AAHSLKGLKE 301 NQWEKYAIVT LINCRSILDP VLSPDFPGFY HSAILNTHDV KGGDDLWELA KRSYTSFINA 361 KNNNKHFTDM GDLNFLMCRA IDNPGLTPSS SLRTSLISVF EDTVIDTSST MHQEIGLEDF 421 IGCASVHGVG PSIAIFDTIR DGHLDCACVY PFPLHTREQI QELIGEMKKI LIDC- AGS-2 (8605 8560,8405 8308) SCR (e 0.952 d 0.000 a 0.000,e 0.847) Exon 1 8605 8560 ( 46 n); score: 0.952 Intron 1 8559 8406 ( 154 n); Pd: 0.000 Pa: 0.000 Exon 2 8405 8308 ( 98 n); score: 0.847 PGS (8605 8560,8405 8308) SGN-E542130- PGS (8601 8560,8405 8308) SGN-E300089- 3-phase translation of AGS-2 (-strand): . . . . . : . 8605 AGCATGTGAAATTAGGTCTTAGGCCTAACTCACACCCCAAAAGCTA : GGAGGAGGATTGCC S M - N - V L G L T H T P K A : R R R I A A C E I R S - A - L T P Q K L : G G G L P H V K L G L R P N S H P K S - : E E D C . . . . . . 8391 TAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCATTCT - A L - R V H P S H - S P M W D F C H S K P Y K E S T H L I N H R C G T F V I L L S L I K S P P I S L I T D V G L L S F . . . 8331 TTAACACCCCACCTCACGCCCAGT L T P H L T P S - H P T S R P F N T P P H A Q Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (+ strand): 8326 8607 AGS-1 (8326 8426,8573 8607) SCR (e 0.956 d 0.709 a 0.000,e 0.914) Exon 1 8326 8426 ( 101 n); score: 0.956 Intron 1 8427 8572 ( 146 n); Pd: 0.709 Pa: 0.000 Exon 2 8573 8607 ( 35 n); score: 0.914 PGS (8326 8426,8573 8607) SGN-E544551- PGS (8326 8415) SGN-E250928+ 3-phase translation of AGS-1 (+strand): . . . . . . 8326 TGTTAAAGAATGACAAAAGTCCCACATCGGTGATTAATGAGATGGGTGGACTCTTTATAA C - R M T K V P H R - L M R W V D S L - V K E - Q K S H I G D - - D G W T L Y K L K N D K S P T S V I N E M G G L F I . . . . . : . 8386 GGCTTAGGCAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGT : GTGAGTTAGGCCTAAGACC G L G N P P P F E L A F G V : - V R P K T A - A I L L P L S - L L G : C E L G L R P R L R Q S S S L - A S F W G : V S - A - D . . 8592 TAATTTCACATGCTCT - F H M L N F T C S L I S H A Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (8326 8454) SCR (e 0.953) Exon 1 8326 8454 ( 129 n); score: 0.953 PGS (8326 8454) SGN-E392149- PGS (8326 8454) SGN-E369423- PGS (8326 8454) SGN-E375169+ PGS (8326 8454) SGN-E375258+ PGS (8326 8454) SGN-E375189+ 3-phase translation of AGS-2 (+strand): . . . . . . 8326 TGTTAAAGAATGACAAAAGTCCCACATCGGTGATTAATGAGATGGGTGGACTCTTTATAA C - R M T K V P H R - L M R W V D S L - V K E - Q K S H I G D - - D G W T L Y K L K N D K S P T S V I N E M G G L F I . . . . . . 8386 GGCTTAGGCAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCTTAAGACC G L G N P P P F E L A F G V - V R L K T A - A I L L P L S - L L G C E L G L R P R L R Q S S S L - A S F W G V S - A - D . 8446 TAATTAAAC - L N N - L I K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 8454 GTTTAATTAGGTCTTAAGCCTAACTCACACCCCAAAAGCTAGCTCAAAGGGAGGAGGATT V - L G L K P N S H P K S - L K G R R I F N - V L S L T H T P K A S S K G G G L L I R S - A - L T P Q K L A Q R E E D . . . . . . 8394 GCCTAAGCCTTATAAAGAGTCCACCCATCTCATTAATCACCGATGTGGGACTTTTGTCAT A - A L - R V H P S H - S P M W D F C H P K P Y K E S T H L I N H R C G T F V I C L S L I K S P P I S L I T D V G L L S . 8334 TCTTTAACA S L T L - F F N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (8330 8426,8461 8607) SCR (e 0.742 d 0.709 a 0.000,e 0.942) Exon 1 8330 8426 ( 97 n); score: 0.742 Intron 1 8427 8460 ( 34 n); Pd: 0.709 Pa: 0.000 Exon 2 8461 8607 ( 147 n); score: 0.942 PGS (8330 8426,8461 8539) SGN-E339247- PGS (8539 8607) SGN-E238245+ 3-phase translation of AGS-3 (+strand): . . . . . . 8330 AAAGAATGACAAAAGTCCCACATCGGTGATTAATGAGATGGGTGGACTCTTTATAAGGCT K E - Q K S H I G D - - D G W T L Y K A K N D K S P T S V I N E M G G L F I R L R M T K V P H R - L M R W V D S L - G . . . . : . . 8390 TAGGCAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGT : TCAAAGCCCCAAAATTAAAAATT - A I L L P L S - L L G : F K A P K L K I R Q S S S L - A S F W G : S K P Q N - K L L G N P P P F E L A F G V : Q S P K I K N . . . . . . 8484 GCTCACGCACCAGATGCTAAGCACTGGGCGTGAGGTGGGGTGTTAAAGAATGACAACAAT A H A P D A K H W A - G G V L K N D N N L T H Q M L S T G R E V G C - R M T T I C S R T R C - A L G V R W G V K E - Q Q . . . . . . 8544 CCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAGTTAGGCCTAAGACCTAATTTCACATG P P P F E L A F G V - V R P K T - F H M L L P L S - L L G C E L G L R P N F T C S S S L - A S F W G V S - A - D L I S H . 8604 CTCT L S A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 14832 13341 AGS-1 (13861 13789,13709 13341) SCR (e 1.000 d 1.000 a 0.897,e 1.000) Exon 1 13861 13789 ( 73 n); score: 1.000 Intron 1 13788 13710 ( 79 n); Pd: 1.000 Pa: 0.897 Exon 2 13709 13341 ( 369 n); score: 1.000 PGS (13861 13789,13709 13341) SGN-E264052- 3-phase translation of AGS-1 (-strand): . . . . . . 13861 ACATCAGAATCATTGGGTAGATGTTCCTCCTACTCCCGGAGCTCTCGTGGTCAATATAGG T S E S L G R C S S Y S R S S R G Q Y R H Q N H W V D V P P T P G A L V V N I G I R I I G - M F L L L P E L S W S I - . . : . . . . 13801 AGATATTCTACAG : CTTATAACGAATGACAAGTTCAAAAGTGTTGATCATAGAGTACTGGC R Y S T : A Y N E - Q V Q K C - S - S T G D I L Q : L I T N D K F K S V D H R V L A E I F Y S : L - R M T S S K V L I I E Y W . . . . . . 13662 TAATAAGGTCGGTCCAAGGGTATCGTTGGCATGCTTCTTCATGACAAACTTTGTGGCAAC - - G R S K G I V G M L L H D K L C G N N K V G P R V S L A C F F M T N F V A T L I R S V Q G Y R W H A S S - Q T L W Q . . . . . . 13602 ACAAAGGCTGTATGGACCTATAAAGGAGCTGATATCGGAACAGAATCCTCCAAACTACAG T K A V W T Y K G A D I G T E S S K L Q Q R L Y G P I K E L I S E Q N P P N Y R H K G C M D L - R S - Y R N R I L Q T T . . . . . . 13542 GGAAACGACGATTAAGGAGTTCACAACTCATTTCAATAACAAAGGGCTGGATGGCACTTC G N D D - G V H N S F Q - Q R A G W H F E T T I K E F T T H F N N K G L D G T S G K R R L R S S Q L I S I T K G W M A L . . . . . . 13482 CACTCTGTTGCATTTTAGACTTTAGACTAAATTGTTCAAATAAGGTTTTGTAATACTATA H S V A F - T L D - I V Q I R F C N T I T L L H F R L - T K L F K - G F V I L Y P L C C I L D F R L N C S N K V L - Y Y . . . . . . 13422 TATGTCAAACTAAGTATGCTCATTATGTAACCATCAATAAATTCTACTCATAGTAAGTAA Y V K L S M L I M - P S I N S T H S K - M S N - V C S L C N H Q - I L L I V S N I C Q T K Y A H Y V T I N K F Y S - - V . . . 13362 TTTTCATGATTATGTTTAGATT F S - L C L D F H D Y V - I I F M I M F R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-4_AGS-1_PPS_1 (13860 13789,13709 13458) (frame '2'; 321 bp, 107 residues) 1 HQNHWVDVPP TPGALVVNIG DILQLITNDK FKSVDHRVLA NKVGPRVSLA CFFMTNFVAT 61 QRLYGPIKEL ISEQNPPNYR ETTIKEFTTH FNNKGLDGTS TLLHFRL- AGS-2 (14832 14265,14110 13940) SCR (e 1.000 d 1.000 a 0.922,e 0.962) Exon 1 14832 14265 ( 568 n); score: 1.000 Intron 1 14264 14111 ( 154 n); Pd: 1.000 Pa: 0.922 Exon 2 14110 13940 ( 171 n); score: 0.962 PGS (14832 14265,14110 13940) SGN-E344752+ 3-phase translation of AGS-2 (-strand): . . . . . . 14832 TTTTACTTCAAATATCAGCTAAGAAAAAAATGGAGTTGATCAACACAACTGAAGTCCAGG F Y F K Y Q L R K K W S - S T Q L K S R F T S N I S - E K N G V D Q H N - S P G L L Q I S A K K K M E L I N T T E V Q . . . . . . 14772 TTCCAAGAGAAGCAAAGTATGACAGGAAGGCTGAACTACAAGCTTTTGATGAGACGAAAA F Q E K Q S M T G R L N Y K L L M R R K S K R S K V - Q E G - T T S F - - D E N V P R E A K Y D R K A E L Q A F D E T K . . . . . . 14712 CCGGTGTTAAGGGACTAGTCGATACAGGTATCACTAAAGTACCAAGAATGTTTGTTCAAC P V L R D - S I Q V S L K Y Q E C L F N R C - G T S R Y R Y H - S T K N V C S T T G V K G L V D T G I T K V P R M F V Q . . . . . . 14652 CGTCAAGGATTGAAGATTCAACAATTCACAGCAACAAGAAGTTCAGTTTTCCAATAATTG R Q G L K I Q Q F T A T R S S V F Q - L V K D - R F N N S Q Q Q E V Q F S N N - P S R I E D S T I H S N K K F S F P I I . . . . . . 14592 ATCTTGATGGTATCAAGGAAAATTCGATCAAACGAAAGAACATAGTCCAGGAAGTCGGTC I L M V S R K I R S N E R T - S R K S V S - W Y Q G K F D Q T K E H S P G S R S D L D G I K E N S I K R K N I V Q E V G . . . . . . 14532 AAGCATCCGAGACTTGGGGATTCTTTCAAGTGATCAATCATGGGATTCCTAGTCATCTTC K H P R L G D S F K - S I M G F L V I F S I R D L G I L S S D Q S W D S - S S S Q A S E T W G F F Q V I N H G I P S H L . . . . . . 14472 TGGAGGAAATGAAAGACGGTGTTCTCAGTTTCTTTGAACAAGATACCGAGGAGAAGAAAC W R K - K T V F S V S L N K I P R R R N G G N E R R C S Q F L - T R Y R G E E T L E E M K D G V L S F F E Q D T E E K K . . . . . . 14412 AGTGGTATACGCGAGATTTGACAAAAGTGTTTACGTTTAACAGCAATTTCGACCTGTTTG S G I R E I - Q K C L R L T A I S T C L V V Y A R F D K S V Y V - Q Q F R P V W Q W Y T R D L T K V F T F N S N F D L F . . . . . . 14352 GAGCACCAGTAACCAACTGGAGAGACACTTTTACTGCTACCACAGCTCCTATACCTCCAA E H Q - P T G E T L L L L P Q L L Y L Q S T S N Q L E R H F Y C Y H S S Y T S K G A P V T N W R D T F T A T T A P I P P . . . : . . . 14292 AACCTGAAGAATTACCTTCTGTTTGCAG : GGATGTTCTCCTTGAGTACACAAACCAAGTGA N L K N Y L L F A : G M F S L S T Q T K - T - R I T F C L Q : G C S P - V H K P S D K P E E L P S V C R : D V L L E Y T N Q V . . . . . . 14078 TGAAATTAGGTGATACTCTATTTGAAATACTGGCTGAAGCTATTGGCCTCGAACCAAATC - N - V I L Y L K Y W L K L L A S N Q I E I R - Y S I - N T G - S Y W P R T K S M K L G D T L F E I L A E A I G L E P N . . . . . . 14018 ACCTCAAGGACATGGGTTGTGCCGAGGGGCTTATGGCGTTAGGCCATTATTATCCAGCAT T S R T W V V P R G L W R - A I I I Q H P Q G H G L C R G A Y G V R P L L S S M H L K D M G C A E G L M A L G H Y Y P A . . 13958 GCCCACAACCAGAACTAAC A H N Q N - P T T R T N C P Q P E L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-4_AGS-2_PPS_1 (14830 14265,14110 13942) (frame '0'; 735 bp, 245 residues) 1 LLQISAKKKM ELINTTEVQV PREAKYDRKA ELQAFDETKT GVKGLVDTGI TKVPRMFVQP 61 SRIEDSTIHS NKKFSFPIID LDGIKENSIK RKNIVQEVGQ ASETWGFFQV INHGIPSHLL 121 EEMKDGVLSF FEQDTEEKKQ WYTRDLTKVF TFNSNFDLFG APVTNWRDTF TATTAPIPPK 181 PEELPSVCRD VLLEYTNQVM KLGDTLFEIL AEAIGLEPNH LKDMGCAEGL MALGHYYPAC 241 PQPEL PGL 5 (- strand): 18798 18164 AGS-1 (18798 18164) SCR (e 1.000) Exon 1 18798 18164 ( 635 n); score: 1.000 PGS (18662 18164) SGN-E308685+ PGS (18787 18301) SGN-E293583+ PGS (18787 18301) SGN-E293584+ PGS (18798 18307) SGN-E300999+ 3-phase translation of AGS-1 (-strand): . . . . . . 18798 TCGGTTGGTGTCTGTTCTGATGGGAGGTAACATTTAGTGGACGCAAGCTAACCGAGACAT S V G V C S D G R - H L V D A S - P R H R L V S V L M G G N I - W T Q A N R D I G W C L F - W E V T F S G R K L T E T . . . . . . 18738 CACTTTTGTTAAAGGGAAGAGTACTATATCCTATTGATGAATAATAGAACAAGATATATC H F C - R E E Y Y I L L M N N R T R Y I T F V K G K S T I S Y - - I I E Q D I S S L L L K G R V L Y P I D E - - N K I Y . . . . . . 18678 AAGAAAATGGATACAAATGAATCAAAACATGATAGAAAAAGTGAGTTAAAAGCCTTTGAT K K M D T N E S K H D R K S E L K A F D R K W I Q M N Q N M I E K V S - K P L M Q E N G Y K - I K T - - K K - V K S L - . . . . . . 18618 GACACAAAATCTGGTGTCAAAGGACTTGTTGATGCAGGAGTAAGTAAAGTCCCTCAGATA D T K S G V K G L V D A G V S K V P Q I T Q N L V S K D L L M Q E - V K S L R Y - H K I W C Q R T C - C R S K - S P S D . . . . . . 18558 TTCATTTCACCTCCAGATACATACTCAAATTCCAACACAGGACAGTTCATTTTTCCAGTT F I S P P D T Y S N S N T G Q F I F P V S F H L Q I H T Q I P T Q D S S F F Q L I H F T S R Y I L K F Q H R T V H F S S . . . . . . 18498 ATAGACCTCCAAGATATGGATAGTCACGATCAAATCAATCGAAAAAAAGTCATTGAGAAA I D L Q D M D S H D Q I N R K K V I E K - T S K I W I V T I K S I E K K S L R K Y R P P R Y G - S R S N Q S K K S H - E . . . . . . 18438 GTCCGCGATGCATCAGAGACATGGGGTTTCTTTCAAGTGATCAATCATGGCGTTCCGTGT V R D A S E T W G F F Q V I N H G V P C S A M H Q R H G V S F K - S I M A F R V S P R C I R D M G F L S S D Q S W R S V . . . . . . 18378 GATGTTATGGAAGAAATGATACGAGGTGTTTGTAGTTTTCATGAACAAGATACTGATATC D V M E E M I R G V C S F H E Q D T D I M L W K K - Y E V F V V F M N K I L I S - C Y G R N D T R C L - F S - T R Y - Y . . . . . . 18318 AAGAAGCAATGGTATACGCGAGAGTTGACTAAAAGAGTAGTTTATAACAGTAACTTTGAT K K Q W Y T R E L T K R V V Y N S N F D R S N G I R E S - L K E - F I T V T L I Q E A M V Y A R V D - K S S L - Q - L - . . . . . . 18258 TTGTATAATGCACCAGCAACTAATTGGAGGGATACTTTTTTCTGCATTATGGCTCCTAAT L Y N A P A T N W R D T F F C I M A P N C I M H Q Q L I G G I L F S A L W L L I F V - C T S N - L E G Y F F L H Y G S - . . . . 18198 CCTCCTAGTCCTGAAGAATTGCCTCCAATCTGTAG P P S P E E L P P I C L L V L K N C L Q S V S S - S - R I A S N L - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-5_AGS-1_PPS_1 (18726 18166) (frame '1'; 561 bp, 187 residues) 1 REEYYILLMN NRTRYIKKMD TNESKHDRKS ELKAFDDTKS GVKGLVDAGV SKVPQIFISP 61 PDTYSNSNTG QFIFPVIDLQ DMDSHDQINR KKVIEKVRDA SETWGFFQVI NHGVPCDVME 121 EMIRGVCSFH EQDTDIKKQW YTRELTKRVV YNSNFDLYNA PATNWRDTFF CIMAPNPPSP 181 EELPPIC 3-phase translation of AGS-1 (+strand): . . . . . . 18164 CTACAGATTGGAGGCAATTCTTCAGGACTAGGAGGATTAGGAGCCATAATGCAGAAAAAA L Q I G G N S S G L G G L G A I M Q K K Y R L E A I L Q D - E D - E P - C R K K T D W R Q F F R T R R I R S H N A E K . . . . . . 18224 GTATCCCTCCAATTAGTTGCTGGTGCATTATACAAATCAAAGTTACTGTTATAAACTACT V S L Q L V A G A L Y K S K L L L - T T Y P S N - L L V H Y T N Q S Y C Y K L L S I P P I S C W C I I Q I K V T V I N Y . . . . . . 18284 CTTTTAGTCAACTCTCGCGTATACCATTGCTTCTTGATATCAGTATCTTGTTCATGAAAA L L V N S R V Y H C F L I S V S C S - K F - S T L A Y T I A S - Y Q Y L V H E N S F S Q L S R I P L L L D I S I L F M K . . . . . . 18344 CTACAAACACCTCGTATCATTTCTTCCATAACATCACACGGAACGCCATGATTGATCACT L Q T P R I I S S I T S H G T P - L I T Y K H L V S F L P - H H T E R H D - S L T T N T S Y H F F H N I T R N A M I D H . . . . . . 18404 TGAAAGAAACCCCATGTCTCTGATGCATCGCGGACTTTCTCAATGACTTTTTTTCGATTG - K K P H V S D A S R T F S M T F F R L E R N P M S L M H R G L S Q - L F F D - L K E T P C L - C I A D F L N D F F S I . . . . . . 18464 ATTTGATCGTGACTATCCATATCTTGGAGGTCTATAACTGGAAAAATGAACTGTCCTGTG I - S - L S I S W R S I T G K M N C P V F D R D Y P Y L G G L - L E K - T V L C D L I V T I H I L E V Y N W K N E L S C . . . . . . 18524 TTGGAATTTGAGTATGTATCTGGAGGTGAAATGAATATCTGAGGGACTTTACTTACTCCT L E F E Y V S G G E M N I - G T L L T P W N L S M Y L E V K - I S E G L Y L L L V G I - V C I W R - N E Y L R D F T Y S . . . . . . 18584 GCATCAACAAGTCCTTTGACACCAGATTTTGTGTCATCAAAGGCTTTTAACTCACTTTTT A S T S P L T P D F V S S K A F N S L F H Q Q V L - H Q I L C H Q R L L T H F F C I N K S F D T R F C V I K G F - L T F . . . . . . 18644 CTATCATGTTTTGATTCATTTGTATCCATTTTCTTGATATATCTTGTTCTATTATTCATC L S C F D S F V S I F L I Y L V L L F I Y H V L I H L Y P F S - Y I L F Y Y S S S I M F - F I C I H F L D I S C S I I H . . . . . . 18704 AATAGGATATAGTACTCTTCCCTTTAACAAAAGTGATGTCTCGGTTAGCTTGCGTCCACT N R I - Y S S L - Q K - C L G - L A S T I G Y S T L P F N K S D V S V S L R P L Q - D I V L F P L T K V M S R L A C V H . . . . 18764 AAATGTTACCTCCCATCAGAACAGACACCAACCGA K C Y L P S E Q T P T N V T S H Q N R H Q P - M L P P I R T D T N R Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-5_AGS-1_PPS_1 (18166 18426) (frame '0'; 258 bp, 86 residues) 1 TDWRQFFRTR RIRSHNAEKS IPPISCWCII QIKVTVINYS FSQLSRIPLL LDISILFMKT 61 TNTSYHFFHN ITRNAMIDHL KETPCL- PGL 6 (+ strand): 19656 21631 AGS-1 (19656 20292) SCR (e 0.995) Exon 1 19656 20292 ( 637 n); score: 0.995 PGS (19656 20292) SGN-E368375+ PGS (19656 20154) SGN-E246120+ 3-phase translation of AGS-1 (+strand): . . . . . . 19656 GCCAGTTCACACTGCACTCGCCGGAATCTCTCACGGCGGCGATCTCTTTCTCCGGAGGAT A S S H C T R R N L S R R R S L S P E D P V H T A L A G I S H G G D L F L R R I Q F T L H S P E S L T A A I S F S G G . . . . . . 19716 TTAAAGTCCTAAGTCTCTTCATTTATATCTTCAATTCACGAATTCCCTTTGGTTAGTGTT L K S - V S S F I S S I H E F P L V S V - S P K S L H L Y L Q F T N S L W L V F F K V L S L F I Y I F N S R I P F G - C . . . . . . 19776 CATGAGCCATAAACGCTACTTTTTATTTTTTGATTTGGTGAAATGTGACTTTTGAATTGG H E P - T L L F I F - F G E M - L L N W M S H K R Y F L F F D L V K C D F - I G S - A I N A T F Y F L I W - N V T F E L . . . . . . 19836 ATCTATGTACATCTTGAAAATCCTCAGATTCAATTTTTCTTAGCTCTGTGTGAATATTTA I Y V H L E N P Q I Q F F L A L C E Y L S M Y I L K I L R F N F S - L C V N I Y D L C T S - K S S D S I F L S S V - I F . . . . . . 19896 CGTCGCTGTGCTTCGGCTACCTGTAGAAATGATAATTTAGAGTCAAAGGAAAATATCATA R R C A S A T C R N D N L E S K E N I I V A V L R L P V E M I I - S Q R K I S - T S L C F G Y L - K - - F R V K G K Y H . . . . . . 19956 AGTTTGGCCTCTTCGACTGTTAGAGCGATTTGTCTGCTGTGCTTTTGGTTCTTCTTTTAA S L A S S T V R A I C L L C F W F F F - V W P L R L L E R F V C C A F G S S F N K F G L F D C - S D L S A V L L V L L L . . . . . . 20016 TCTTTGCTTCTAGCTGGAAATTTTTTCTTTTTTTCTGCTTCTTCGATATGTTTTGGAAAC S L L L A G N F F F F S A S S I C F G N L C F - L E I F S F F L L L R Y V L E T I F A S S W K F F L F F C F F D M F W K . . . . . . 20076 TGAATTTGGGGTTGTTTTTTTGGGTCTAAAGCCACTGTTGAGCTGCCCTTGTGTGTTAGC - I W G C F F G S K A T V E L P L C V S E F G V V F L G L K P L L S C P C V L A L N L G L F F W V - S H C - A A L V C - . . . . . . 20136 AGTTAGTACATTATCTGGAATTGATTGTTTTCGTCTTTGCAGTCTGCTGCAATAGCATCA S - Y I I W N - L F S S L Q S A A I A S V S T L S G I D C F R L C S L L Q - H Q Q L V H Y L E L I V F V F A V C C N S I . . . . . . 20196 AAGGATACTTCTGTGCTTCCTTTGATAGATGAACAACTAGTTTTCCTCGTAAAAATGATG K D T S V L P L I D E Q L V F L V K M M R I L L C F L - - M N N - F S S - K - C K G Y F C A S F D R - T T S F P R K N D . . . . 20256 TAAAGGTTTAATTTGAATTCAGTTTCATTCGTTCATT - R F N L N S V S F V H K G L I - I Q F H S F I V K V - F E F S F I R S Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 20292 AATGAACGAATGAAACTGAATTCAAATTAAACCTTTACATCATTTTTACGAGGAAAACTA N E R M K L N S N - T F T S F L R G K L M N E - N - I Q I K P L H H F Y E E N - - T N E T E F K L N L Y I I F T R K T . . . . . . 20232 GTTGTTCATCTATCAAAGGAAGCACAGAAGTATCCTTTGATGCTATTGCAGCAGACTGCA V V H L S K E A Q K Y P L M L L Q Q T A L F I Y Q R K H R S I L - C Y C S R L Q S C S S I K G S T E V S F D A I A A D C . . . . . . 20172 AAGACGAAAACAATCAATTCCAGATAATGTACTAACTGCTAACACACAAGGGCAGCTCAA K T K T I N S R - C T N C - H T R A A Q R R K Q S I P D N V L T A N T Q G Q L N K D E N N Q F Q I M Y - L L T H K G S S . . . . . . 20112 CAGTGGCTTTAGACCCAAAAAAACAACCCCAAATTCAGTTTCCAAAACATATCGAAGAAG Q W L - T Q K N N P K F S F Q N I S K K S G F R P K K T T P N S V S K T Y R R S T V A L D P K K Q P Q I Q F P K H I E E . . . . . . 20052 CAGAAAAAAAGAAAAAATTTCCAGCTAGAAGCAAAGATTAAAAGAAGAACCAAAAGCACA Q K K R K N F Q L E A K I K R R T K S T R K K E K I S S - K Q R L K E E P K A Q A E K K K K F P A R S K D - K K N Q K H . . . . . . 19992 GCAGACAAATCGCTCTAACAGTCGAAGAGGCCAAACTTATGATATTTTCCTTTGACTCTA A D K S L - Q S K R P N L - Y F P L T L Q T N R S N S R R G Q T Y D I F L - L - S R Q I A L T V E E A K L M I F S F D S . . . . . . 19932 AATTATCATTTCTACAGGTAGCCGAAGCACAGCGACGTAAATATTCACACAGAGCTAAGA N Y H F Y R - P K H S D V N I H T E L R I I I S T G S R S T A T - I F T Q S - E K L S F L Q V A E A Q R R K Y S H R A K . . . . . . 19872 AAAATTGAATCTGAGGATTTTCAAGATGTACATAGATCCAATTCAAAAGTCACATTTCAC K I E S E D F Q D V H R S N S K V T F H K L N L R I F K M Y I D P I Q K S H F T K N - I - G F S R C T - I Q F K S H I S . . . . . . 19812 CAAATCAAAAAATAAAAAGTAGCGTTTATGGCTCATGAACACTAACCAAAGGGAATTCGT Q I K K - K V A F M A H E H - P K G I R K S K N K K - R L W L M N T N Q R E F V P N Q K I K S S V Y G S - T L T K G N S . . . . . . 19752 GAATTGAAGATATAAATGAAGAGACTTAGGACTTTAAATCCTCCGGAGAAAGAGATCGCC E L K I - M K R L R T L N P P E K E I A N - R Y K - R D L G L - I L R R K R S P - I E D I N E E T - D F K S S G E R D R . . . . 19692 GCCGTGAGAGATTCCGGCGAGTGCAGTGTGAACTGGC A V R D S G E C S V N W P - E I P A S A V - T G R R E R F R R V Q C E L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (19684 19766,20631 21631) SCR (e 1.000 d 0.604 a 0.989,e 0.997) Exon 1 19684 19766 ( 83 n); score: 1.000 Intron 1 19767 20630 ( 864 n); Pd: 0.604 Pa: 0.989 Exon 2 20631 21631 (1001 n); score: 0.997 PGS (19684 19766,20631 21188) SGN-E321546+ PGS (20669 21381) SGN-E369987+ PGS (20669 21325) SGN-E262560+ PGS (20669 21193) SGN-E254785+ PGS (20669 21170) SGN-E259547+ PGS (20670 21068) SGN-E260421+ PGS (20711 21105) SGN-E281948+ PGS (20879 21450) SGN-E259228+ PGS (20879 21280) SGN-E258766+ PGS (20984 21590) SGN-E353860+ PGS (21146 21631) SGN-E292488+ PGS (21181 21590) SGN-E369986- PGS (21306 21608) SGN-E338917+ 3-phase translation of AGS-2 (+strand): . . . . . . 19684 TCTCACGGCGGCGATCTCTTTCTCCGGAGGATTTAAAGTCCTAAGTCTCTTCATTTATAT S H G G D L F L R R I - S P K S L H L Y L T A A I S F S G G F K V L S L F I Y I S R R R S L S P E D L K S - V S S F I . . . : . . . 19744 CTTCAATTCACGAATTCCCTTTG : GCAGGAGTGAGTGTAAAGCACAAGTTTTACCAAGTGG L Q F T N S L W : Q E - V - S T S F T K W F N S R I P F : G R S E C K A Q V L P S G S S I H E F P L : A G V S V K H K F Y Q V . . . . . . 20668 TTGAAGTGGAAATTATCCGAGTTCTTTTGCATTAGCACAACACGCGTATGAAATTCTGAT L K W K L S E F F C I S T T R V - N S D - S G N Y P S S F A L A Q H A Y E I L I V E V E I I R V L L H - H N T R M K F - . . . . . . 20728 CAAGCTAACATCATTTGCAATTCATTGCTTGGAAAGTGATATCTTAAGCATGAAGCTCAT Q A N I I C N S L L G K - Y L K H E A H K L T S F A I H C L E S D I L S M K L I S S - H H L Q F I A W K V I S - A - S S . . . . . . 20788 AGCACGGTTAAGACCCATCCAAACCTGTACAGCTCTTCGTGAAATTATAGGGCCTCTGCA S T V K T H P N L Y S S S - N Y R A S A A R L R P I Q T C T A L R E I I G P L Q - H G - D P S K P V Q L F V K L - G L C . . . . . . 20848 GTCTCGTTCGTTTCAACCTGATTTTGTTCCCAGAGATCCTAATGTCAAGCCCATAAGGTA V S F V S T - F C S Q R S - C Q A H K V S R S F Q P D F V P R D P N V K P I R Y S L V R F N L I L F P E I L M S S P - G . . . . . . 20908 CAAATATCCTGCTGCCTATGATCCATATGGCCCGAGACCCCCACCATCAGACAAGATAGT Q I S C C L - S I W P E T P T I R Q D S K Y P A A Y D P Y G P R P P P S D K I V T N I L L P M I H M A R D P H H Q T R - . . . . . . 20968 TCAGCTTGCTGAACGTATTGCTGCTTTAGCCCCAGAAGAACGTAGACAAATTGGTCCTTT S A C - T Y C C F S P R R T - T N W S F Q L A E R I A A L A P E E R R Q I G P L F S L L N V L L L - P Q K N V D K L V L . . . . . . 21028 ACTCAGGGAGATACTAAGGCACCCTACTTTGAAACCAATTTCAGTAGAAGGCATGGATTT T Q G D T K A P Y F E T N F S R R H G F L R E I L R H P T L K P I S V E G M D L Y S G R Y - G T L L - N Q F Q - K A W I . . . . . . 21088 GGGTGCAATGGGAGGAGCAGGTGGTGGACCGGCAAAGGCTGAGGAGAAGAAGGTTGAGAA G C N G R S R W W T G K G - G E E G - E G A M G G A G G G P A K A E E K K V E K W V Q W E E Q V V D R Q R L R R R R L R . . . . . . 21148 AACAGCATTTGACGTGAAGTTAGAGAAATTTGATGCAGCTGCGAAAATCAAGGTGATCAA N S I - R E V R E I - C S C E N Q G D Q T A F D V K L E K F D A A A K I K V I K K Q H L T - S - R N L M Q L R K S R - S . . . . . . 21208 AGAGGTTAGATCCTTCACGAGTCTAGGTCTGAAGGAAGCCAAGGACCTTGTCGAAAAGGT R G - I L H E S R S E G S Q G P C R K G E V R S F T S L G L K E A K D L V E K V K R L D P S R V - V - R K P R T L S K R . . . . . . 21268 TCCTGCTATACTTAAGCAAGGAGTAACCAAAGAGGAAGCTAATGAAATAATAGAAAAGAT S C Y T - A R S N Q R G S - - N N R K D P A I L K Q G V T K E E A N E I I E K I F L L Y L S K E - P K R K L M K - - K R . . . . . . 21328 CAAAGCTGTTGGAGGAGTCGCCGTTATGGAGTAACAACAATCTCTGTTGGATTTAGCAGG Q S C W R S R R Y G V T T I S V G F S R K A V G G V A V M E - Q Q S L L D L A G S K L L E E S P L W S N N N L C W I - Q . . . . . . 21388 TTCCCTCATCCTGCATTTCTTCTTTTTTCACAACGGAACATGCCAAAATTAACATAATTT F P H P A F L L F S Q R N M P K L T - F S L I L H F F F F H N G T C Q N - H N F V P S S C I S S F F T T E H A K I N I I . . . . . . 21448 CTCTTTGTTGGATTTAGTTTCTTGGGTTAGGACGATCACGTTTTGTTTAATAGGTTTCGT L F V G F S F L G - D D H V L F N R F R S L L D L V S W V R T I T F C L I G F V S L C W I - F L G L G R S R F V - - V S . . . . . . 21508 GCTTTTTACAGCTTTGAATAGGCATGTTGATTACAATATTTTGTATCTGATCTTGCTGCT A F Y S F E - A C - L Q Y F V S D L A A L F T A L N R H V D Y N I L Y L I L L L C F L Q L - I G M L I T I F C I - S C C . . . . . . 21568 AGACTGTTAAGAATTCGAAATAATCTCGTGGAATTAATTTAGGTGCACTTGAGCTTGCCC R L L R I R N N L V E L I - V H L S L P D C - E F E I I S W N - F R C T - A C P - T V K N S K - S R G I N L G A L E L A . 21628 CTAA L - P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-6_AGS-2_PPS_1 (20672 21361) (frame '2'; 687 bp, 229 residues) 1 SGNYPSSFAL AQHAYEILIK LTSFAIHCLE SDILSMKLIA RLRPIQTCTA LREIIGPLQS 61 RSFQPDFVPR DPNVKPIRYK YPAAYDPYGP RPPPSDKIVQ LAERIAALAP EERRQIGPLL 121 REILRHPTLK PISVEGMDLG AMGGAGGGPA KAEEKKVEKT AFDVKLEKFD AAAKIKVIKE 181 VRSFTSLGLK EAKDLVEKVP AILKQGVTKE EANEIIEKIK AVGGVAVME- PGL 7 (+ strand): 21995 27965 AGS-1 (21995 22362,22442 22517) SCR (e 0.867 d 0.000 a 0.000,e 0.717) Exon 1 21995 22362 ( 368 n); score: 0.867 Intron 1 22363 22441 ( 79 n); Pd: 0.000 Pa: 0.000 Exon 2 22442 22517 ( 76 n); score: 0.717 PGS (21995 22362,22442 22517) SGN-E542827+ 3-phase translation of AGS-1 (+strand): . . . . . . 21995 TTGACTTTTTTTTGTTTTAATGACTAATTTATAATTATTATTTTGAATCAAATTTATTTT L T F F C F N D - F I I I I L N Q I Y F - L F F V L M T N L - L L F - I K F I L D F F L F - - L I Y N Y Y F E S N L F . . . . . . 22055 ATGTTTCACTAATATTCTTGTAAAATTTATTGTAGATGACCAAATTTTTTCTTCGCATAC M F H - Y S C K I Y C R - P N F F F A Y C F T N I L V K F I V D D Q I F S S H T Y V S L I F L - N L L - M T K F F L R I . . . . . . 22115 GAAATTAAATTACAATACACACAAAAAAAATAGTTTATTTTTTGTTCTTTAAACTAAGGA E I K L Q Y T Q K K - F I F C S L N - G K L N Y N T H K K N S L F F V L - T K E R N - I T I H T K K I V Y F L F F K L R . . . . . . 22175 ATGTAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAAAGAAGTCAA M - E K N K I R I R N S N N Y N K R S Q C K K K T K - E - E T Q I I I I K E V K N V R K K Q N K N K K L K - L - - K K S . . . . . . 22235 AAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATA K I I Y V - K K L K Y T L N F D R R I I K - F M Y E K N - N I P - T L I E E S Y K N N L C M K K I K I Y L E L - - K N H . . . . . . 22295 TATACTCCTAAATATTTTTTTTAAAAAAAATAGAACTAATAAATATAAATTTAAAACTAA Y T P K Y F F - K K - N - - I - I - N - I L L N I F F K K N R T N K Y K F K T N I Y S - I F F L K K I E L I N I N L K L . : . . . . . 22355 TCTTTTAA : TATATATGTGCCACTTTTATAACGAGGGTATATCAGCTCCAATGACAAAGTT S F N : I Y V P L L - R G Y I S S N D K V L L : I Y M C H F Y N E G I S A P M T K L I F - : Y I C A T F I T R V Y Q L Q - Q S . . . 22494 GAGGGTATATCAAACCTTTTCCCT E G I S N L F P R V Y Q T F S - G Y I K P F P Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (22081 22528,24343 24369,26062 26087,27839 27965) SCR (e 0.911 d 0.198 a 0.973,e 0.481 d 0.000 a 0.000,e 0.615 d 0.959 a 0.000,e 0.728) Exon 1 22081 22528 ( 448 n); score: 0.911 Intron 1 22529 24342 (1814 n); Pd: 0.198 Pa: 0.973 Exon 2 24343 24369 ( 27 n); score: 0.481 Intron 2 24370 26061 (1692 n); Pd: 0.000 Pa: 0.000 Exon 3 26062 26087 ( 26 n); score: 0.615 Intron 3 26088 27838 (1751 n); Pd: 0.959 Pa: 0.000 Exon 4 27839 27965 ( 127 n); score: 0.728 PGS (22081 22496) SGN-E243215+ PGS (22208 22528,24343 24369,26062 26087,27839 27965) SGN-E578389- 3-phase translation of AGS-2 (+strand): . . . . . . 22081 TTATTGTAGATGACCAAATTTTTTCTTCGCATACGAAATTAAATTACAATACACACAAAA L L - M T K F F L R I R N - I T I H T K Y C R - P N F F F A Y E I K L Q Y T Q K I V D D Q I F S S H T K L N Y N T H K . . . . . . 22141 AAAATAGTTTATTTTTTGTTCTTTAAACTAAGGAATGTAAGAAAAAAACAAAATAAGAAT K I V Y F L F F K L R N V R K K Q N K N K - F I F C S L N - G M - E K N K I R I K N S L F F V L - T K E C K K K T K - E . . . . . . 22201 AAGAAACTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATT K K L K - L - - K K S K N N L C M K K I R N S N N Y N K R S Q K I I Y V - K K L - E T Q I I I I K E V K K - F M Y E K N . . . . . . 22261 AAAATATACCTTGAACTTTGATAGAAGAATCATATATACTCCTAAATATTTTTTTTAAAA K I Y L E L - - K N H I Y S - I F F L K K Y T L N F D R R I I Y T P K Y F F - K - N I P - T L I E E S Y I L L N I F F K . . . . . . 22321 AAAATAGAACTAATAAATATAAATTTAAAACTAATCTTTTAACTTCCGTTAAATGAAGGG K I E L I N I N L K L I F - L P L N E G K - N - - I - I - N - S F N F R - M K G K N R T N K Y K F K T N L L T S V K - R . . . . . . 22381 TATATGTGAGCTATTTTGTAACGGCAGGGATATATGTGAGCCGTTTGTATAATGGTAAGG Y M - A I L - R Q G Y M - A V C I M V R I C E L F C N G R D I C E P F V - W - G V Y V S Y F V T A G I Y V S R L Y N G K . . . . . . 22441 GTATATATGTGCCACTTTTATAACGAGGGTATATCAGCTCCAATGACAAAGTTGAGGGTA V Y M C H F Y N E G I S A P M T K L R V Y I C A T F I T R V Y Q L Q - Q S - G Y G I Y V P L L - R G Y I S S N D K V E G . . . : . . . : 22501 TATCAAACCTTTTCCCTTAGAATTATAT : CTTATAACGAATGACAAGTTCAAAAGT : GTGCT Y Q T F S L R I I : S Y N E - Q V Q K : C A I K P F P L E L Y : L I T N D K F K S : V L I S N L F P - N Y I : L - R M T S S K V : C . . . : . . . 26067 GCTTAAACATAGCTGAAACAG : ATATTGTCTAACTAATTAATAATTGAGTAACTTTCACAT A - T - L K Q : I L S N - L I I E - L S H L K H S - N R : Y C L T N - - L S N F H M C L N I A E T : D I V - L I N N - V T F T . . . . . . 27878 GTAGTAAACATAAGAATCATATTTTAATGTTATAGTTATAATTTGCATAATTGTGCTCCA V V N I R I I F - C Y S Y N L H N C A P - - T - E S Y F N V I V I I C I I V L H C S K H K N H I L M L - L - F A - L C S . . . 27938 TAACAAATATAAATATGTATATTTTACT - Q I - I C I F Y N K Y K Y V Y F T I T N I N M Y I L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (23361 23857,23940 24110) SCR (e 0.857 d 0.936 a 0.996,e 0.851) Exon 1 23361 23857 ( 497 n); score: 0.857 Intron 1 23858 23939 ( 82 n); Pd: 0.936 Pa: 0.996 Exon 2 23940 24110 ( 171 n); score: 0.851 PGS (23361 23857,23940 24110) SGN-E344752+ 3-phase translation of AGS-3 (+strand): . . . . . . 23361 AAGTATGAAAGAATGGCTGAACTACAAGCCTTTGATAAGACGAAAGCCGGTGTTAAGGGA K Y E R M A E L Q A F D K T K A G V K G S M K E W L N Y K P L I R R K P V L R D V - K N G - T T S L - - D E S R C - G . . . . . . 23421 CTAGTCGATGCAGGTATAACCAAAGTACCACGAATGTTTATACAACCATCGATGATTGAA L V D A G I T K V P R M F I Q P S M I E - S M Q V - P K Y H E C L Y N H R - L N T S R C R Y N Q S T T N V Y T T I D D - . . . . . . 23481 CATTCGAGGAGTGAAAACAACAACAAGTTGATCGAGTTTCCAATAATTGATCTTGATGGC H S R S E N N N K L I E F P I I D L D G I R G V K T T T S - S S F Q - L I L M A T F E E - K Q Q Q V D R V S N N - S - W . . . . . . 23541 ATCAAGGAAGATCCGATCAAACAAAAGAACATAGTCCAAGAAGTTGGTCATGCATCCGAG I K E D P I K Q K N I V Q E V G H A S E S R K I R S N K R T - S K K L V M H P R H Q G R S D Q T K E H S P R S W S C I R . . . . . . 23601 AGTTGGGGTTTCTTTCAAGTGATCAATCATGGGATTCCTAGTCATGTTATGGATGCAATG S W G F F Q V I N H G I P S H V M D A M V G V S F K - S I M G F L V M L W M Q - E L G F L S S D Q S W D S - S C Y G C N . . . . . . 23661 AAAGACGGTGTTACCAGGTTCTTTGAGCAAGATACTGAGGTGAAGAAGCAGTGGTATACG K D G V T R F F E Q D T E V K K Q W Y T K T V L P G S L S K I L R - R S S G I R E R R C Y Q V L - A R Y - G E E A V V Y . . . . . . 23721 CGAGACTTGAACAAAGAGTTCACATTTAACAGCAATTTTGATCTGTTTAGAGCACCGGTA R D L N K E F T F N S N F D L F R A P V E T - T K S S H L T A I L I C L E H R - A R L E Q R V H I - Q Q F - S V - S T G . . . . . . 23781 ACCAACTGGAGGGACACTTTTCGTGCCACTATAGCTCCTATACCTCTAAAACCCGAACAA T N W R D T F R A T I A P I P L K P E Q P T G G T L F V P L - L L Y L - N P N N N Q L E G H F S C H Y S S Y T S K T R T . . : . . . . 23841 CTCCCTTCTGTCTGCAG : AGATATTCTCCTCGAGTACACGAACCAAGTGATGAAATTAGGT L P S V C R : D I L L E Y T N Q V M K L G S L L S A : E I F S S S T R T K - - N - V T P F C L Q : R Y S P R V H E P S D E I R . . . . . . 23983 GAAACTCTATTTGAACTAGTGTCCGAGGCTGTTGGCCTCGAACCAAATCACCTCAAGGAT E T L F E L V S E A V G L E P N H L K D K L Y L N - C P R L L A S N Q I T S R I - N S I - T S V R G C W P R T K S P Q G . . . . . . 24043 ATGGGTTGTGCAGAGGGGCTTCTTGCTTTAGGCCAATATTATCCAGCATGCCCACAACCT M G C A E G L L A L G Q Y Y P A C P Q P W V V Q R G F L L - A N I I Q H A H N L Y G L C R G A S C F R P I L S S M P T T . 24103 GAACTTAC E L N L - T Y Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-7_AGS-3_PPS_1 (23361 23857,23940 24108) (frame '1'; 666 bp, 222 residues) 1 KYERMAELQA FDKTKAGVKG LVDAGITKVP RMFIQPSMIE HSRSENNNKL IEFPIIDLDG 61 IKEDPIKQKN IVQEVGHASE SWGFFQVINH GIPSHVMDAM KDGVTRFFEQ DTEVKKQWYT 121 RDLNKEFTFN SNFDLFRAPV TNWRDTFRAT IAPIPLKPEQ LPSVCRDILL EYTNQVMKLG 181 ETLFELVSEA VGLEPNHLKD MGCAEGLLAL GQYYPACPQP EL AGS-4 (24189 24261,24343 24610) SCR (e 0.932 d 1.000 a 0.973,e 0.914) Exon 1 24189 24261 ( 73 n); score: 0.932 Intron 1 24262 24342 ( 81 n); Pd: 1.000 Pa: 0.973 Exon 2 24343 24610 ( 268 n); score: 0.914 PGS (24189 24261,24343 24610) SGN-E264052- 3-phase translation of AGS-4 (+strand): . . . . . . 24189 ACATCAGAGCCATTGGGTAGATGTTCCCCCTACTCCCGGAGCACTCGTGGTCAATATAGG T S E P L G R C S P Y S R S T R G Q Y R H Q S H W V D V P P T P G A L V V N I G I R A I G - M F P L L P E H S W S I - . . : . . . . 24249 AGATCTTCTACAG : CTTATAACGAATGACAAGTTCAAAAGTGTTGATCATAGAGTACTGGC R S S T : A Y N E - Q V Q K C - S - S T G D L L Q : L I T N D K F K S V D H R V L A E I F Y S : L - R M T S S K V L I I E Y W . . . . . . 24390 TAATAAGGTCGGTCCAAGGGTATCGTTGGCATGCTTCTTCATGACGAATTGTATGACAAC - - G R S K G I V G M L L H D E L Y D N N K V G P R V S L A C F F M T N C M T T L I R S V Q G Y R W H A S S - R I V - Q . . . . . . 24450 ACATAGGATGTATGGACCTATAAAGGAGCTGATATCGGAACAGAACCCTCCGAAGTACAG T - D V W T Y K G A D I G T E P S E V Q H R M Y G P I K E L I S E Q N P P K Y R H I G C M D L - R S - Y R N R T L R S T . . . . . . 24510 GGAAACAACGATTAAGGAGTTCACAACTTATTTCAATAACAAAGGGCTGGATGGCACTTC G N N D - G V H N L F Q - Q R A G W H F E T T I K E F T T Y F N N K G L D G T S G K Q R L R S S Q L I S I T K G W M A L . . . . . 24570 CACTCTGTTGCATTTTAGACTCTAAATCATCGCGATTGTAA H S V A F - T L N H R D C T L L H F R L - I I A I V P L C C I L D S K S S R L - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-7_AGS-4_PPS_1 (24190 24261,24343 24594) (frame '2'; 321 bp, 107 residues) 1 HQSHWVDVPP TPGALVVNIG DLLQLITNDK FKSVDHRVLA NKVGPRVSLA CFFMTNCMTT 61 HRMYGPIKEL ISEQNPPKYR ETTIKEFTTY FNNKGLDGTS TLLHFRL- AGS-5 (24677 24703,24765 26489) SCR (e 0.667 d 0.566 a 0.000,e 0.827) Exon 1 24677 24703 ( 27 n); score: 0.667 Intron 1 24704 24764 ( 61 n); Pd: 0.566 Pa: 0.000 Exon 2 24765 26489 (1725 n); score: 0.827 PGS (24677 24703,24765 24975) SGN-E256804+ PGS (24743 25168) SGN-E267205+ PGS (24789 25290) SGN-E241804- PGS (24838 25633) SGN-E554480- PGS (24964 25525) SGN-E256254- PGS (24977 25506) SGN-E245623- PGS (24977 25290) SGN-E235645- PGS (24983 25635) SGN-E321560- PGS (25176 25650) SGN-E201552- PGS (25195 25841) SGN-E275405- PGS (25281 25947) SGN-E348210- PGS (25532 26222) SGN-E344515- PGS (25775 26247) SGN-E331213- PGS (26065 26489) SGN-E208080- 3-phase translation of AGS-5 (+strand): . . . : . . . 24677 AAAGGAGCAGATAAAGACTAAAAAAAT : AATAACAAATCCTAAATTACTGGTTTTAGGCTA K G A D K D - K N : N N K S - I T G F R L K E Q I K T K K I : I T N P K L L V L G - R S R - R L K K : - - Q I L N Y W F - A . . . . . . 24798 AATACTTGAACAAATTTGGGTTCTCTTCATCTCTTTCCAAGTATTCTCTAGTGATGAGAT N T - T N L G S L H L F P S I L - - - D I L E Q I W V L F I S F Q V F S S D E I K Y L N K F G F S S S L S K Y S L V M R . . . . . . 24858 CTTCTATCTGCTTTTTGATTGCTTTTAAGTCAGGCTTGAACATGGAGCTCAACTGCTCAA L L S A F - L L L S Q A - T W S S T A Q F Y L L F D C F - V R L E H G A Q L L N S S I C F L I A F K S G L N M E L N C S . . . . . . 24918 CACACTCTGCTACTAGTTGTTGATGAGGAAGAACCTTTCGACTCTTCATAATACGTACTA H T L L L V V D E E E P F D S S - Y V L T L C Y - L L M R K N L S T L H N T Y Y T H S A T S C - - G R T F R L F I I R T . . . . . . 24978 TACATGCATCGATTGCATAACGTCTATCTTTGCCTACATCCTCCACCACCTTTTTCCTTT Y M H R L H N V Y L C L H P P P P F S F T C I D C I T S I F A Y I L H H L F P F I H A S I A - R L S L P T S S T T F F L . . . . . . 25038 CATCCACAAGAGGTAACGGTACCCTAACCCGTCTCATCCTGTCAGTGAACTTGGAGTTGA H P Q E V T V P - P V S S C Q - T W S - I H K R - R Y P N P S H P V S E L G V E S S T R G N G T L T R L I L S V N L E L . . . . . . 25098 ACTCGAAATGATCAGATGATGTAACAGTTGCATTGCTAGGATCTTTAATCAGAATTTTAT T R N D Q M M - Q L H C - D L - S E F Y L E M I R - C N S C I A R I F N Q N F I N S K - S D D V T V A L L G S L I R I L . . . . . . 25158 ACTTAGCACATGAAAGAGATTGAAGCAATCTGATCAAGTCATCATCAGCTAAATTTAACT T - H M K E I E A I - S S H H Q L N L T L S T - K R L K Q S D Q V I I S - I - L Y L A H E R D - S N L I K S S S A K F N . . . . . . 25218 GACTTTTGATTTCCGAGTAACTCAATCTATCTGACGAATTAAACAATGACAGAACAGCAG D F - F P S N S I Y L T N - T M T E Q Q T F D F R V T Q S I - R I K Q - Q N S S - L L I S E - L N L S D E L N N D R T A . . . . . . 25278 CCTGATAGGTTCCCAGAATCAATTCAATGGTTTTTGAATCAAACTTCCCAATGACGTTAC P D R F P E S I Q W F L N Q T S Q - R Y L I G S Q N Q F N G F - I K L P N D V T A - - V P R I N S M V F E S N F P M T L . . . . . . 25338 ACGTACCCAATGAATAAATCCATGTCAGTTTCCTGTGTTTCGTTGTTGTCTGATAGAATT T Y P M N K S M S V S C V S L L S D R I R T Q - I N P C Q F P V F R C C L I E F H V P N E - I H V S F L C F V V V - - N . . . . . . 25398 CGTTGAAGACTTGTACACACTTAGCCATCTCGACAGGTAGACTCAAATCACAAGATTTAT R - R L V H T - P S R Q V D S N H K I Y V E D L Y T L S H L D R - T Q I T R F I S L K T C T H L A I S T G R L K S Q D L . . . . . . 25458 AGCTAGGCCAGAACCCACTTGTAAGTACTGTGACAGTTAGATCAATTCCAGTACTCGCGT S - A R T H L - V L - Q L D Q F Q Y S R A R P E P T C K Y C D S - I N S S T R V - L G Q N P L V S T V T V R S I P V L A . . . . . . 25518 TGTTGCTGAGATATTCTTGAAAATCGTTCTGATTTTCCTTAGCTAACGTCAAGTCTGTTA C C - D I L E N R S D F P - L T S S L L V A E I F L K I V L I F L S - R Q V C Y L L L R Y S - K S F - F S L A N V K S V . . . . . . 25578 CCATTCCCTCCATCTTTGATGTAAACTGTCCACCACAATACTGCTTTAGCTTCGTTAACA P F P P S L M - T V H H N T A L A S L T H S L H L - C K L S T T I L L - L R - H T I P S I F D V N C P P Q Y C F S F V N . . . . . . 25638 TAAGCCTTTCGTGTTCATCATTAGCACATTTACTAAAGAGCAATCTACGAGAAAGCTTCT - A F R V H H - H I Y - R A I Y E K A S K P F V F I I S T F T K E Q S T R K L L I S L S C S S L A H L L K S N L R E S F . . . . . . 25698 TCCTGCAGAACTCTCCAAAAAGGTCTTTGTCATTAATGTACGCGAGAAGCTTTACCACCT S C R T L Q K G L C H - C T R E A L P P P A E L S K K V F V I N V R E K L Y H L F L Q N S P K R S L S L M Y A R S F T T . . . . . . 25758 TATCCAACGTCTCCTCGATAGCATCATCACTAAGTTTTTCACTTCCACCTTTCTTGAGAA Y P T S P R - H H H - V F H F H L S - E I Q R L L D S I I T K F F T S T F L E N L S N V S S I A S S L S F S L P P F L R . . . . . . 25818 TACTATCACAATACGAAGCAAGGAGCTCTGCACTTGAACAACCCGATACAATCTTGTTAC Y Y H N T K Q G A L H L N N P I Q S C Y T I T I R S K E L C T - T T R Y N L V T I L S Q Y E A R S S A L E Q P D T I L L . . . . . . 25878 AAAACACCTCAAATGCCTCCTTGAGAGCCTTATGAAACAGAGAGTGATTAGCAAAACAGC K T P Q M P P - E P Y E T E S D - Q N S K H L K C L L E S L M K Q R V I S K T A Q N T S N A S L R A L - N R E - L A K Q . . . . . . 25938 TCGTAACATAACTCATATACTTATCGTAAAGCTCAATGACCTTCCTAACAAAGAAGGGAG S - H N S Y T Y R K A Q - P S - Q R R E R N I T H I L I V K L N D L P N K E G S L V T - L I Y L S - S S M T F L T K K G . . . . . . 25998 TTTCAGACTGTCTATTTGTCGTATCATCAGCCTGTTGCACTAAGTACATCCCTTCAGCAA F Q T V Y L S Y H Q P V A L S T S L Q Q F R L S I C R I I S L L H - V H P F S N V S D C L F V V S S A C C T K Y I P S A . . . . . . 26058 CGACGTGCTGCTTAAACATAGCTGAAACAGGTACCAATCCCTTGTCGATTTTGTAGAACA R R A A - T - L K Q V P I P C R F C R T D V L L K H S - N R Y Q S L V D F V E Q T T C C L N I A E T G T N P L S I L - N . . . . . . 26118 GCCTATACATTCGAGATAAATCATCTACCTTATCATCTCTAAGCAATACTCGAATTCCAG A Y T F E I N H L P Y H L - A I L E F Q P I H S R - I I Y L I I S K Q Y S N S R S L Y I R D K S S T L S S L S N T R I P . . . . . . 26178 AATGCTCCTTCTCGAGTAACTGATTCGTATATACAACCAACAATTCATATCGCACTTTCT N A P S R V T D S Y I Q P T I H I A L S M L L L E - L I R I Y N Q Q F I S H F L E C S F S S N - F V Y T T N N S Y R T F . . . . . . 26238 CTAAAAGTTTCGACTCACTAACAACATGGAGATAATTCGATACTCTCTCTTTCTCCTTCT L K V S T H - Q H G D N S I L S L S P S - K F R L T N N M E I I R Y S L F L L L S K S F D S L T T W R - F D T L S F S F . . . . . . 26298 TCAAACACTCCTCTGCGTTCAACATATAATCAGGACACGAATCTTCCCCAATCCAACTTG S N T P L R S T Y N Q D T N L P Q S N L Q T L L C V Q H I I R T R I F P N P T - F K H S S A F N I - S G H E S S P I Q L . . . . . . 26358 AAGCTTTACGAGAGTAATAACCTGCAGTATCTTCAAGCATTGCAAATTCAAAATCATTCA K L Y E S N N L Q Y L Q A L Q I Q N H S S F T R V I T C S I F K H C K F K I I H E A L R E - - P A V S S S I A N S K S F . . . . . . 26418 CGTAGCACTCCATATTCCCCATCCCAACTGCAACGAATATATCAACCACACTCTTCAATA R S T P Y S P S Q L Q R I Y Q P H S S I V A L H I P H P N C N E Y I N H T L Q - T - H S I F P I P T A T N I S T T L F N . . 26478 AACTTCTGTCAA N F C Q T S V K L L S Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-7_AGS-5_PPS_1 (25550 25912) (frame '0'; 360 bp, 120 residues) 1 FSLANVKSVT IPSIFDVNCP PQYCFSFVNI SLSCSSLAHL LKSNLRESFF LQNSPKRSLS 61 LMYARSFTTL SNVSSIASSL SFSLPPFLRI LSQYEARSSA LEQPDTILLQ NTSNASLRAL 121 - >C09HBa0168F14.1-2+_PGL-7_AGS-5_PPS_2 (26259 26489) (frame '1'; 231 bp, 77 residues) 1 QHGDNSILSL SPSSNTPLRS TYNQDTNLPQ SNLKLYESNN LQYLQALQIQ NHSRSTPYSP 61 SQLQRIYQPH SSINFCQ PGL 8 (+ strand): 33976 37498 AGS-1 (33976 34131,34246 34353,34502 34660,34733 34816,34903 35108,35311 35412,36138 36247,36631 36782,37076 37498) SCR (e 1.000 d 0.488 a 0.995,e 1.000 d 0.983 a 0.991,e 1.000 d 1.000 a 0.994,e 0.976 d 0.999 a 0.969,e 1.000 d 0.993 a 0.921,e 1.000 d 0.862 a 0.999,e 1.000 d 1.000 a 0.999,e 1.000 d 0.996 a 1.000,e 0.986) Exon 1 33976 34131 ( 156 n); score: 1.000 Intron 1 34132 34245 ( 114 n); Pd: 0.488 Pa: 0.995 Exon 2 34246 34353 ( 108 n); score: 1.000 Intron 2 34354 34501 ( 148 n); Pd: 0.983 Pa: 0.991 Exon 3 34502 34660 ( 159 n); score: 1.000 Intron 3 34661 34732 ( 72 n); Pd: 1.000 Pa: 0.994 Exon 4 34733 34816 ( 84 n); score: 0.976 Intron 4 34817 34902 ( 86 n); Pd: 0.999 Pa: 0.969 Exon 5 34903 35108 ( 206 n); score: 1.000 Intron 5 35109 35310 ( 202 n); Pd: 0.993 Pa: 0.921 Exon 6 35311 35412 ( 102 n); score: 1.000 Intron 6 35413 36137 ( 725 n); Pd: 0.862 Pa: 0.999 Exon 7 36138 36247 ( 110 n); score: 1.000 Intron 7 36248 36630 ( 383 n); Pd: 1.000 Pa: 0.999 Exon 8 36631 36782 ( 152 n); score: 1.000 Intron 8 36783 37075 ( 293 n); Pd: 0.996 Pa: 1.000 Exon 9 37076 37498 ( 423 n); score: 0.986 PGS (33976 34131,34246 34353,34502 34660,34733 34816,34903 35085) SGN-E315321+ PGS (35015 35108,35311 35412,36138 36247,36631 36782,37076 37266) SGN-E320551+ PGS (35015 35108,35311 35412,36138 36247,36631 36782,37076 37265) SGN-E320465+ PGS (37085 37498) SGN-E354281+ 3-phase translation of AGS-1 (+strand): . . . . . . 33976 TTAGACTTGACGAATAAAATTAATTCTTCAAAGGCCTTGTACATATCTCACTTTGAGGCT L D L T N K I N S S K A L Y I S H F E A - T - R I K L I L Q R P C T Y L T L R L R L D E - N - F F K G L V H I S L - G . . . . . . 34036 ATGCAAAATGTAGTGAAGCTGCATAAAGCCACTTCTAATGCTGCTCTGGAGGAAATTTCG M Q N V V K L H K A T S N A A L E E I S C K M - - S C I K P L L M L L W R K F R Y A K C S E A A - S H F - C C S G G N F . . . . : . . 34096 ACTTTGGCTTCTTCTAATTCAATTTCCACTAAAGAA : TTTTTAGATGCAGAGTCTGTTGAA T L A S S N S I S T K E : F L D A E S V E L W L L L I Q F P L K N : F - M Q S L L K D F G F F - F N F H - R : I F R C R V C - . . . . . . 34270 ACAAATTTAATTTTTGATGAACTTCAGAACACTCTGTCAACCCACCAAGGAGAAATGGCA T N L I F D E L Q N T L S T H Q G E M A Q I - F L M N F R T L C Q P T K E K W Q N K F N F - - T S E H S V N P P R R N G . . . : . . . 34330 AATTTTGCTAGAGAGCTTCGTCAG : AGATTTAATGACAGTACAGAGCATTTGACAAATATC N F A R E L R Q : R F N D S T E H L T N I I L L E S F V R : D L M T V Q S I - Q I S K F C - R A S S : E I - - Q Y R A F D K Y . . . . . . 34538 TCTGAGATCATACAAGGATTTTTTGACAAACTTTTAGAAGAATCAAAAAGACTTGAAAGA S E I I Q G F F D K L L E E S K R L E R L R S Y K D F L T N F - K N Q K D L K D L - D H T R I F - Q T F R R I K K T - K . . . . . . 34598 CATTCAACAACAGCTGATGAGATTCAAACGAAGTCTATTGCTGAATTTGAGAAGGCATAT H S T T A D E I Q T K S I A E F E K A Y I Q Q Q L M R F K R S L L L N L R R H M T F N N S - - D S N E V Y C - I - E G I . : . . . . . 34658 GAG : GAGCAATCAAGATCAGATGCAGAAAAGCTTATTGCTGAGGTGACTTCCTTGGTCTCG E : E Q S R S D A E K L I A E V T S L V S R : S N Q D Q M Q K S L L L R - L P W S R - : G A I K I R C R K A Y C - G D F L G L . . . : . . . 34790 AATCACATGCGTCGCCAAAAAGAACTG : GTTGGTGCAAGGCTTGGTGATCTTAGAGAAACT N H M R R Q K E L : V G A R L G D L R E T I T C V A K K N W : L V Q G L V I L E K L E S H A S P K R T : G W C K A W - S - R N . . . . . . 34936 GTTTCTGGAAATAAGACATTCTTGGATGGGCATGTATCCTCTATGGAAGGTATTACAACA V S G N K T F L D G H V S S M E G I T T F L E I R H S W M G M Y P L W K V L Q Q C F W K - D I L G W A C I L Y G R Y Y N . . . . . . 34996 GATACAAAAAGAAAATGGCAGGACTTTTATACGCAAGCAGAAGGTGAGACCAAAGAAAAT D T K R K W Q D F Y T Q A E G E T K E N I Q K E N G R T F I R K Q K V R P K K M R Y K K K M A G L L Y A S R R - D Q R K . . . . . . : 35056 GCTGATTTCTCAGCTGCTAAACATTGCCGAATGGAGTTACTCATGCAGAAGTG : TGTAAGC A D F S A A K H C R M E L L M Q K C : V S L I S Q L L N I A E W S Y S C R S : V - A C - F L S C - T L P N G V T H A E V : C K . . . . . . 35318 ACAAGTGAAACAACTGTGAAACGGTGGCAAAGTACTCATGAATTGGCAAAAGACATGTGC T S E T T V K R W Q S T H E L A K D M C Q V K Q L - N G G K V L M N W Q K T C A H K - N N C E T V A K Y S - I G K R H V . . . . : . . 35378 AATCAACATGTTTCAACAATGCATTCAGTTGTCAG : GAACCTATGCGATAGCAATGAGCAA N Q H V S T M H S V V R : N L C D S N E Q I N M F Q Q C I Q L S : G T Y A I A M S N Q S T C F N N A F S C Q : E P M R - Q - A . . . . . . 36163 CATGTTATTGAATTCGATTCCACAAGGGAAGCTGCTGAAGAAGCTGTGAAAAGGAATAGT H V I E F D S T R E A A E E A V K R N S M L L N S I P Q G K L L K K L - K G I V T C Y - I R F H K G S C - R S C E K E - . . . : . . . 36223 GAAGATATCATTAAATCTATTGACG : GCTTGTCAGGGGAAGAGAGAGGATCTATATCTGGC E D I I K S I D : G L S G E E R G S I S G K I S L N L L T : A C Q G K R E D L Y L A - R Y H - I Y - R : L V R G R E R I Y I W . . . . . . 36666 ATTCTGGATACTGCCAGTGCACACTCGGAGACCCTAGATGAACTTAAGAAAGATCATTGC I L D T A S A H S E T L D E L K K D H C F W I L P V H T R R P - M N L R K I I A H S G Y C Q C T L G D P R - T - E R S L . . . . . . : 36726 ACACAGTCTACCTCCATTGAACAGAAGGCCATTGAAACATTTCAGCAGAAGTTTATG : GAT T Q S T S I E Q K A I E T F Q Q K F M : D H S L P P L N R R P L K H F S R S L W : I H T V Y L H - T E G H - N I S A E V Y : G . . . . . . 37079 TATGAGCCAACTGGAACAACACCAATTAGGTCTGAACCAGATGTACCAAGCAAGGGAACA Y E P T G T T P I R S E P D V P S K G T M S Q L E Q H Q L G L N Q M Y Q A R E Q L - A N W N N T N - V - T R C T K Q G N . . . . . . 37139 ATTGAGTCGTTGCGAGCCATGCCAATGGAGACTCTACTAGAGGAATTTCGAGAGAACAAT I E S L R A M P M E T L L E E F R E N N L S R C E P C Q W R L Y - R N F E R T I N - V V A S H A N G D S T R G I S R E Q . . . . . . 37199 TCATTGGAGTCCTTCCAAGTAAAGGAACTAAAGCCATCACTTATACCACGATCTCCTCTC S L E S F Q V K E L K P S L I P R S P L H W S P S K - R N - S H H L Y H D L L S F I G V L P S K G T K A I T Y T T I S S . . . . . . 37259 TCACTGATTAACAATTAGCAGATTGGTCTCATCGTTCCCTCGTGCATATGATCACTTAAT S L I N N - Q I G L I V P S C I - S L N H - L T I S R L V S S F P R A Y D H L I L T D - Q L A D W S H R S L V H M I T - . . . . . . 37319 CTGTATCGGTATTTTCCTTGTATACTGAGTGAATACTGCAAACTGCAGTATATATTGTAG L Y R Y F P C I L S E Y C K L Q Y I L - C I G I F L V Y - V N T A N C S I Y C R S V S V F S L Y T E - I L Q T A V Y I V . . . . . . 37379 GTTGATTGGCACAGTCTTAAACAATAAATCCCACCTTGGGATTTAGAAAAATGGCTGTAA V D W H S L K Q - I P P W D L E K W L - L I G T V L N N K S H L G I - K N G C K G - L A Q S - T I N P T L G F R K M A V . . . . . . 37439 ATGAGTAACTCTTGGTACATTTATTTAGTAAAAGATGGTGCTCTCTATGTATTTGTGAAA M S N S W Y I Y L V K D G A L Y V F V K - V T L G T F I - - K M V L S M Y L - N E - L L V H L F S K R W C S L C I C E Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-8_AGS-1_PPS_1 (33976 34131,34246 34353,34502 34660,34733 34816,34903 35108,35311 35412,36138 36247,36631 36782,37076 37276) (frame '1'; 1275 bp, 425 residues) 1 LDLTNKINSS KALYISHFEA MQNVVKLHKA TSNAALEEIS TLASSNSIST KEFLDAESVE 61 TNLIFDELQN TLSTHQGEMA NFARELRQRF NDSTEHLTNI SEIIQGFFDK LLEESKRLER 121 HSTTADEIQT KSIAEFEKAY EEQSRSDAEK LIAEVTSLVS NHMRRQKELV GARLGDLRET 181 VSGNKTFLDG HVSSMEGITT DTKRKWQDFY TQAEGETKEN ADFSAAKHCR MELLMQKCVS 241 TSETTVKRWQ STHELAKDMC NQHVSTMHSV VRNLCDSNEQ HVIEFDSTRE AAEEAVKRNS 301 EDIIKSIDGL SGEERGSISG ILDTASAHSE TLDELKKDHC TQSTSIEQKA IETFQQKFMD 361 YEPTGTTPIR SEPDVPSKGT IESLRAMPME TLLEEFRENN SLESFQVKEL KPSLIPRSPL 421 SLINN- PGL 9 (+ strand): 46449 48513 AGS-1 (46449 47146,47326 47570,47761 47860,47992 48513) SCR (e 1.000 d 0.999 a 0.999,e 1.000 d 0.977 a 0.961,e 1.000 d 0.985 a 0.986,e 0.964) Exon 1 46449 47146 ( 698 n); score: 1.000 Intron 1 47147 47325 ( 179 n); Pd: 0.999 Pa: 0.999 Exon 2 47326 47570 ( 245 n); score: 1.000 Intron 2 47571 47760 ( 190 n); Pd: 0.977 Pa: 0.961 Exon 3 47761 47860 ( 100 n); score: 1.000 Intron 3 47861 47991 ( 131 n); Pd: 0.985 Pa: 0.986 Exon 4 47992 48513 ( 522 n); score: 0.964 PGS (46449 46919) SGN-E240648+ PGS (46449 46860) SGN-E239600+ PGS (46474 46849) SGN-E240518+ PGS (46613 47146,47326 47422) SGN-E261244+ PGS (46744 47146,47326 47487) SGN-E235797+ PGS (46983 47146,47326 47570,47761 47860,47992 48140) SGN-E367950+ PGS (46983 47146,47326 47570) SGN-E237654+ PGS (46998 47146,47326 47570,47761 47860,47992 48153) SGN-E232957+ PGS (46998 47146,47326 47570,47761 47860,47992 48088) SGN-E240137+ PGS (46998 47146,47326 47570,47761 47818) SGN-E232887+ PGS (47058 47146,47326 47570,47761 47860,47992 48105) SGN-E323892+ PGS (47059 47146,47326 47570,47761 47860,47992 48099) SGN-E228259+ PGS (47394 47570,47761 47860,47992 48277) SGN-E231264+ PGS (47425 47570,47761 47860,47992 48228) SGN-E553013+ PGS (47785 47860,47992 48513) SGN-E367949- 3-phase translation of AGS-1 (+strand): . . . . . . 46449 TGATCGTCCCTGATAACAGTATCAATAGAACTGAGTTTCGCGATCCAACTACAGCTTGGA - S S L I T V S I E L S F A I Q L Q L G D R P - - Q Y Q - N - V S R S N Y S L D I V P D N S I N R T E F R D P T T A W . . . . . . 46509 TGGGCCAAGATGGGCTTTGGAGGATTTTAATAGCAAGTATGAGAAAACATAGAGGGATGG W A K M G F G G F - - Q V - E N I E G W G P R W A L E D F N S K Y E K T - R D G M G Q D G L W R I L I A S M R K H R G M . . . . . . 46569 CATTGTTGTATAGAAGTAGAGATTTTATGAAATGGATCAAAGCCCAACATCCACTTCATT H C C I E V E I L - N G S K P N I H F I I V V - K - R F Y E M D Q S P T S T S F A L L Y R S R D F M K W I K A Q H P L H . . . . . . 46629 CATCTACTAATACTGGAAATTGGGAGTGTCCTGATTTTTTCCCTGTATTATTTAATAGTA H L L I L E I G S V L I F S L Y Y L I V I Y - Y W K L G V S - F F P C I I - - Y S S T N T G N W E C P D F F P V L F N S . . . . . . 46689 CCAATGGTTTAGATGTATCGTATCGCGGAAAAAATGTTAAATATGTCCTCAAGAATAGTC P M V - M Y R I A E K M L N M S S R I V Q W F R C I V S R K K C - I C P Q E - S T N G L D V S Y R G K N V K Y V L K N S . . . . . . 46749 TTGATGTTGCTAGGTTTGATTATTACACTATTGGCATGTATCACACCAAAATAGATAGGT L M L L G L I I T L L A C I T P K - I G - C C - V - L L H Y W H V S H Q N R - V L D V A R F D Y Y T I G M Y H T K I D R . . . . . . 46809 ATATTCCGAATAACAATTCAATTGATGGTTGGAAGGGATTGAGAATCGACTATGGTAATT I F R I T I Q L M V G R D - E S T M V I Y S E - Q F N - W L E G I E N R L W - F Y I P N N N S I D G W K G L R I D Y G N . . . . . . 46869 TCTATGCATCGAAGACATTCTATGATCCTAGCAGAAATCGAAGGGTTATTTGGGGTTGGT S M H R R H S M I L A E I E G L F G V G L C I E D I L - S - Q K S K G Y L G L V F Y A S K T F Y D P S R N R R V I W G W . . . . . . 46929 CAAATGAATCCGATGTATTACCTGACGATGAAATTAAGAAAGGATGGGCTGGAATTCAAG Q M N P M Y Y L T M K L R K D G L E F K K - I R C I T - R - N - E R M G W N S R S N E S D V L P D D E I K K G W A G I Q . . . . . . 46989 GTATTCCGCGACAAGTATGGCTAAACCTTAGTGGTAAACAATTACTTCAATGGCCTATTG V F R D K Y G - T L V V N N Y F N G L L Y S A T S M A K P - W - T I T S M A Y - G I P R Q V W L N L S G K Q L L Q W P I . . . . . . 47049 AAGAATTAGAAACCCTAAGGAAGCAAAAGGTCCAATTGAACAACAAGAAGTTGAGCAAGG K N - K P - G S K R S N - T T R S - A R R I R N P K E A K G P I E Q Q E V E Q G E E L E T L R K Q K V Q L N N K K L S K . . . . : . . 47109 GAGAAATGTTTGAAGTTAAAGGGATCTCAGCATCACAG : GCTGATGTTGAAGTGCTGTTCT E K C L K L K G S Q H H R : L M L K C C S R N V - S - R D L S I T : G - C - S A V L G E M F E V K G I S A S Q : A D V E V L F . . . . . . 47348 CATTTTCAAGTTTGAACGAGGCCGAACAATTTGATCCTAGATGGGCTGACCTATATGCCC H F Q V - T R P N N L I L D G L T Y M P I F K F E R G R T I - S - M G - P I C P S F S S L N E A E Q F D P R W A D L Y A . . . . . . 47408 AAGACGTTTGTGCCATTAAGGGTTCGACTATCCAAGGTGGGCTTGGACCATTTGGGCTTG K T F V P L R V R L S K V G L D H L G L R R L C H - G F D Y P R W A W T I W A C Q D V C A I K G S T I Q G G L G P F G L . . . . . . 47468 TGACATTAGCTTCTAAAAACTTAGAAGAATACACACCTGTTTTCTTCCGAGTGTTCAAGG - H - L L K T - K N T H L F S S E C S R D I S F - K L R R I H T C F L P S V Q G V T L A S K N L E E Y T P V F F R V F K . . . . . : . 47528 CTCAAAAAAGTTATAAGATTCTCATGTGCTCAGATGCTAGAAG : ATCTTCCATGAGACAAA L K K V I R F S C A Q M L E : D L P - D K S K K L - D S H V L R C - K : I F H E T K A Q K S Y K I L M C S D A R R : S S M R Q . . . . . . 47778 ATGAAGCAATGTACAAGCCCTCATTTGCTGGATATGTAGATGTAGATTTAGAAGACATGA M K Q C T S P H L L D M - M - I - K T - - S N V Q A L I C W I C R C R F R R H E N E A M Y K P S F A G Y V D V D L E D M . . . : . . . 47838 AGAAGTTATCTCTTAGGAGTTTG : ATTGATAACTCAGTAGTGGAAAGTTTCGGTGCTGGTG R S Y L L G V - : L I T Q - W K V S V L V E V I S - E F : D - - L S S G K F R C W W K K L S L R S L : I D N S V V E S F G A G . . . . . . 48029 GCAAAACATGCATAACATCAAGGGTGTATCCAACTTTAGCGATTTATGATAATGCACATT A K H A - H Q G C I Q L - R F M I M H I Q N M H N I K G V S N F S D L - - C T F G K T C I T S R V Y P T L A I Y D N A H . . . . . . 48089 TATTTGTTTTTAACAATGGCTCTGAGACAATCACAATTGAGACTCTGAATGCTTGGAGCA Y L F L T M A L R Q S Q L R L - M L G A I C F - Q W L - D N H N - D S E C L E H L F V F N N G S E T I T I E T L N A W S . . . . . . 48149 TGGATGCATGTAAGATGAACTAAATATTTTCAAAAAAATTGGAATTATGTCTACAATTAT W M H V R - T K Y F Q K N W N Y V Y N Y G C M - D E L N I F K K I G I M S T I I M D A C K M N - I F S K K L E L C L Q L . . . . . . 48209 ATATGTCTAAAGAGACAAAAATTGTGTTAAATTTAACAGTAGATGATGTTCACAAAAATC I C L K R Q K L C - I - Q - M M F T K I Y V - R D K N C V K F N S R - C S Q K S Y M S K E T K I V L N L T V D D V H K N . . . . . . 48269 CTCTATAATTGTCTCTAATTTATTTTGGTGAATTTAGAAGGCAAAGTGTGTGTATGGATT L Y N C L - F I L V N L E G K V C V W I S I I V S N L F W - I - K A K C V Y G F P L - L S L I Y F G E F R R Q S V C M D . . . . . . 48329 TTTCTAGTACCATATATATATATATTAAGTAAGAAATTTGTTAGCTTTCCTTTTTGTTTT F L V P Y I Y I L S K K F V S F P F C F F - Y H I Y I Y - V R N L L A F L F V L F S S T I Y I Y I K - E I C - L S F L F . . . . . . 48389 GTAACATAATCAAATGTGTGGTCTTATGTAGAACTAATATTTGGTAATATTAGGCAAGTT V T - S N V W S Y V E L I F G N I R Q V - H N Q M C G L M - N - Y L V I L G K L C N I I K C V V L C R T N I W - Y - A S . . . . . . 48449 GTTATGTGACTTATTTTATTCAAAAATATAATAAGAAGTTCAAAGAGAAGAGTACAAGTA V M - L I L F K N I I R S S K R R V Q V L C D L F Y S K I - - E V Q R E E Y K - C Y V T Y F I Q K Y N K K F K E K S T S . 48509 AGTAA S V K - Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-9_AGS-1_PPS_1 (46451 47146,47326 47570,47761 47860,47992 48171) (frame '0'; 1218 bp, 406 residues) 1 IVPDNSINRT EFRDPTTAWM GQDGLWRILI ASMRKHRGMA LLYRSRDFMK WIKAQHPLHS 61 STNTGNWECP DFFPVLFNST NGLDVSYRGK NVKYVLKNSL DVARFDYYTI GMYHTKIDRY 121 IPNNNSIDGW KGLRIDYGNF YASKTFYDPS RNRRVIWGWS NESDVLPDDE IKKGWAGIQG 181 IPRQVWLNLS GKQLLQWPIE ELETLRKQKV QLNNKKLSKG EMFEVKGISA SQADVEVLFS 241 FSSLNEAEQF DPRWADLYAQ DVCAIKGSTI QGGLGPFGLV TLASKNLEEY TPVFFRVFKA 301 QKSYKILMCS DARRSSMRQN EAMYKPSFAG YVDVDLEDMK KLSLRSLIDN SVVESFGAGG 361 KTCITSRVYP TLAIYDNAHL FVFNNGSETI TIETLNAWSM DACKMN- PGL 10 (+ strand): 49599 52944 AGS-1 (49599 49886,50143 50151,50485 51503,52232 52476,52575 52671,52747 52944) SCR (e 1.000 d 1.000 a 0.000,e 1.000 d 1.000 a 0.813,e 1.000 d 1.000 a 0.982,e 0.996 d 0.981 a 0.951,e 1.000 d 0.964 a 0.974,e 0.990) Exon 1 49599 49886 ( 288 n); score: 1.000 Intron 1 49887 50142 ( 256 n); Pd: 1.000 Pa: 0.000 Exon 2 50143 50151 ( 9 n); score: 1.000 Intron 2 50152 50484 ( 333 n); Pd: 1.000 Pa: 0.813 Exon 3 50485 51503 (1019 n); score: 1.000 Intron 3 51504 52231 ( 728 n); Pd: 1.000 Pa: 0.982 Exon 4 52232 52476 ( 245 n); score: 0.996 Intron 4 52477 52574 ( 98 n); Pd: 0.981 Pa: 0.951 Exon 5 52575 52671 ( 97 n); score: 1.000 Intron 5 52672 52746 ( 75 n); Pd: 0.964 Pa: 0.974 Exon 6 52747 52944 ( 198 n); score: 0.990 PGS (49599 49886,50143 50151,50485 50956) SGN-E546911+ PGS (49600 49886,50143 50151,50485 50827) SGN-E334559+ PGS (49600 49886,50143 50151,50485 50755) SGN-E331604+ PGS (49600 49886,50143 50151,50485 50743) SGN-E334572+ PGS (49612 49886,50143 50151,50485 50792) SGN-E332525+ PGS (49614 49886,50143 50151,50485 50662) SGN-E329652+ PGS (49615 49886,50143 50151,50485 50629) SGN-E331382+ PGS (49618 49886,50143 50151,50485 50830) SGN-E334424+ PGS (49627 49886,50143 50151,50485 50777) SGN-E334092+ PGS (49638 49886,50143 50151,50485 50907) SGN-E333482+ PGS (49675 49886,50143 50151,50485 50887) SGN-E330542+ PGS (49830 49886,50143 50151,50485 51016) SGN-E334064+ PGS (50657 51335) SGN-E332502+ PGS (50685 51159) SGN-E334020+ PGS (50694 51116) SGN-E331134+ PGS (51024 51503,52232 52407) SGN-E373644+ PGS (51157 51503,52232 52471) SGN-E329978+ PGS (51249 51503,52232 52476,52575 52671,52747 52938) SGN-E546910- PGS (51281 51503,52232 52476,52575 52671,52747 52941) SGN-E547396- PGS (51356 51503,52232 52476,52575 52671,52747 52936) SGN-E373643- PGS (52245 52476,52575 52671,52747 52944) SGN-E225360- PGS (52279 52476,52575 52671,52747 52944) SGN-E218044- PGS (52302 52476,52575 52671,52747 52944) SGN-E225721- PGS (52335 52476,52575 52671,52747 52916) SGN-E225386- PGS (52342 52476,52575 52671,52747 52941) SGN-E225547- PGS (52422 52476,52575 52671,52747 52944) SGN-E217968- 3-phase translation of AGS-1 (+strand): . . . . . . 49599 CTTATCCAAAAAAAAAAAAATTAAAAAAAATTATTTAGATTAAATATCACTATCTGTCAA L I Q K K K N - K K L F R L N I T I C Q L S K K K K I K K N Y L D - I S L S V K Y P K K K K L K K I I - I K Y H Y L S . . . . . . 49659 AGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTCGTT S P I I K I K - K L W I I H L I K V L V A Q S L K - N K N Y G L F I - - K F S L K P N H - N K I K I M D Y S S N K S S R . . . . . . 49719 GGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTGTTT G L C Q L S - F A F L - F Y Y P I M L F G F A S Y L S L L F C N F I I Q - C C F W A L P V I L V C F F V I L L S N N V V . . . . . . 49779 TTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATACTG L L L I K F L F T C N L K M L - M F I L C F S - S F Y S L A I S K C C K C S Y C F A S H K V F I H L Q S Q N A V N V H T . . . . . : . : 49839 TTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG : ATCCCAATG : CAC F I E L V I I F S P K N I G S M : I P M : H S S N W L S F S A R K T L D Q - : S Q C : T V H R T G Y H F Q P E K H W I N : D P N : A . . . . . . 50488 CAATGTATTTCAATGGAGTGTATCATCTATTCTACCAGTACAACCCAAATGGTTCAGTAT Q C I S M E C I I Y S T S T T Q M V Q Y N V F Q W S V S S I L P V Q P K W F S M P M Y F N G V Y H L F Y Q Y N P N G S V . . . . . . 50548 GGGGTAACATTGTTTGGGCTCATTCCGTTTCAAAAGACTTGATCAATTGGATCAATTTAG G V T L F G L I P F Q K T - S I G S I - G - H C L G S F R F K R L D Q L D Q F R W G N I V W A H S V S K D L I N W I N L . . . . . . 50608 AACCTGCAATTTACCCATCAAAGCCATTTGATCAATTCGGTACCTGGTCTGGATCAGCAA N L Q F T H Q S H L I N S V P G L D Q Q T C N L P I K A I - S I R Y L V W I S N E P A I Y P S K P F D Q F G T W S G S A . . . . . . 50668 CCATCCTACCTGGTAACAAGCCAGTCATCTTGTACACCGGAATCATAGATGCCAACCAAA P S Y L V T S Q S S C T P E S - M P T K H P T W - Q A S H L V H R N H R C Q P N T I L P G N K P V I L Y T G I I D A N Q . . . . . . 50728 CCCAAGTCCAAAACTACGCAATCCCAGCTAACTTATCCGATCCATATCTCCGCGAATGGA P K S K T T Q S Q L T Y P I H I S A N G P S P K L R N P S - L I R S I S P R M D T Q V Q N Y A I P A N L S D P Y L R E W . . . . . . 50788 TCAAGCCAGACAACAACCCATTAATTATAGCCGATGAAAGTATCAACAAGACCAAGTTTC S S Q T T T H - L - P M K V S T R P S F Q A R Q Q P I N Y S R - K Y Q Q D Q V S I K P D N N P L I I A D E S I N K T K F . . . . . . 50848 GTGACCCAACAACAGCATGGATGGGTAAAGACGGGCATTGGAGAATCGTCATGGGAAGTT V T Q Q Q H G W V K T G I G E S S W E V - P N N S M D G - R R A L E N R H G K F R D P T T A W M G K D G H W R I V M G S . . . . . . 50908 TGAGGAAACACAGCAGGGGCTTAGCTATAATGTATAGGAGCAAAGACTTTATGAAATGGG - G N T A G A - L - C I G A K T L - N G E E T Q Q G L S Y N V - E Q R L Y E M G L R K H S R G L A I M Y R S K D F M K W . . . . . . 50968 TCAAGGCTAAACACCCACTTCACTCAACTAACGGCACTGGAAACTGGGAATGCCCTGATT S R L N T H F T Q L T A L E T G N A L I Q G - T P T S L N - R H W K L G M P - F V K A K H P L H S T N G T G N W E C P D . . . . . . 51028 TTTACCCAGTTTCATCGAAAGGTACTGATGGGTTGGATCAATACGGTGAGGAACACAAGT F T Q F H R K V L M G W I N T V R N T S L P S F I E R Y - W V G S I R - G T Q V F Y P V S S K G T D G L D Q Y G E E H K . . . . . . 51088 ACGTGCTGAAGAACAGTATGGATCTTACTCGATTTGAGTATTATACACTTGGAAAATACG T C - R T V W I L L D L S I I H L E N T R A E E Q Y G S Y S I - V L Y T W K I R Y V L K N S M D L T R F E Y Y T L G K Y . . . . . . 51148 ATACGAAAAAAGATAGGTACGTTCCAGATCCAGATTCTGTCGATAGTTTGAAGGGATTGA I R K K I G T F Q I Q I L S I V - R D - Y E K R - V R S R S R F C R - F E G I E D T K K D R Y V P D P D S V D S L K G L . . . . . . 51208 GACTCGATTACGGTAACTTCTACGCATCGAAGTCATTCTACGATCCAAGCAAAAATCGAA D S I T V T S T H R S H S T I Q A K I E T R L R - L L R I E V I L R S K Q K S K R L D Y G N F Y A S K S F Y D P S K N R . . . . . . 51268 GGGTTATCTGGGGTTGGTCTAATGAATCAGATATATTCCCAGAGGATGATAATGCGAAGG G L S G V G L M N Q I Y S Q R M I M R R G Y L G L V - - I R Y I P R G - - C E G R V I W G W S N E S D I F P E D D N A K . . . . . . 51328 GATGGGCTGGGATTCAATTGATTCCTCGTAAAGTATGGCTTGATCCAAGTGGTAAGCAGT D G L G F N - F L V K Y G L I Q V V S S M G W D S I D S S - S M A - S K W - A V G W A G I Q L I P R K V W L D P S G K Q . . . . . . 51388 TGGTTCAATGGCCTGTGGAGGAACTAGAAACCCTAAGAACTCAAAAGGTTCAATTGAGCA W F N G L W R N - K P - E L K R F N - A G S M A C G G T R N P K N S K G S I E Q L V Q W P V E E L E T L R T Q K V Q L S . . . . . . : 51448 ACAAGAAGATGAACAATGGGGAGAAGATTGAAGTTACAGGAATCACACCAGCACAG : GCTG T R R - T M G R R L K L Q E S H Q H R : L Q E D E Q W G E D - S Y R N H T S T : G - N K K M N N G E K I E V T G I T P A Q : A . . . . . . 52236 ATGTTGAAGTGACATTCTCATTTGCAAGTTTGGATAAGGCAGAGTCATTTGATCCTAAAT M L K - H S H L Q V W I R Q S H L I L N C - S D I L I C K F G - G R V I - S - M D V E V T F S F A S L D K A E S F D P K . . . . . . 52296 GGAATGATATGTATGCACAAGATGTTTGTGGACTCAAGGGTGCAGATGTTCAAGGTGGGC G M I C M H K M F V D S R V Q M F K V G E - Y V C T R C L W T Q G C R C S R W A W N D M Y A Q D V C G L K G A D V Q G G . . . . . . 52356 TTGGGCCATTTGGTCTTGCTACATTAGCTACTGAAAACTTGGAAGAAAACACACCGGTTT L G H L V L L H - L L K T W K K T H R F W A I W S C Y I S Y - K L G R K H T G F L G P F G L A T L A T E N L E E N T P V . . . . . . 52416 TCTTCCGAGTTTTCAAAGCACAGCAAAACTACAAGGTTCTCTTGTGTTCTGACGCTAAAA S S E F S K H S K T T R F S C V L T L K L P S F Q S T A K L Q G S L V F - R - K F F R V F K A Q Q N Y K V L L C S D A K . : . . . . . 52476 G : GTCAACTCTTAAGTTCAATGAAACAATGTACAAAGCTTCATTTGCTGGATTTGTTGATG : G Q L L S S M K Q C T K L H L L D L L M : V N S - V Q - N N V Q S F I C W I C - C R : S T L K F N E T M Y K A S F A G F V D . . . . : . . 52634 TTGATTTGGCTGACAAGAAATTGTCACTCAGAAGCTTG : ATTGATAATTCAGTTATAGAAA L I W L T R N C H S E A - : L I I Q L - K - F G - Q E I V T Q K L : D - - F S Y R N V D L A D K K L S L R S L : I D N S V I E . . . . . . 52769 CTTTTGGTGCTGGTGGAAAGACATGTATAACATCGAGGGTTTATCCAACATTGGCAATTA L L V L V E R H V - H R G F I Q H W Q L F W C W W K D M Y N I E G L S N I G N - T F G A G G K T C I T S R V Y P T L A I . . . . . . 52829 ACGACGAGGCACATTTATTCGCGTTTAACAACGGAACGGAGCCAATCACAATTGAGAGTT T T R H I Y S R L T T E R S Q S Q L R V R R G T F I R V - Q R N G A N H N - E F N D E A H L F A F N N G T E P I T I E S . . . . . . 52889 TGGATGCATGGAGTATGGGCAAAGCTAAGATACAATATTGAAGAAAAAAAAAAGAA W M H G V W A K L R Y N I E E K K K G C M E Y G Q S - D T I L K K K K R L D A W S M G K A K I Q Y - R K K K E Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-10_AGS-1_PPS_1 (49673 49886,50143 50151,50485 51503,52232 52476,52575 52671,52747 52929) (frame '0'; 1764 bp, 588 residues) 1 NKIKIMDYSS NKSSRWALPV ILVCFFVILL SNNVVFASHK VFIHLQSQNA VNVHTVHRTG 61 YHFQPEKHWI NDPNAPMYFN GVYHLFYQYN PNGSVWGNIV WAHSVSKDLI NWINLEPAIY 121 PSKPFDQFGT WSGSATILPG NKPVILYTGI IDANQTQVQN YAIPANLSDP YLREWIKPDN 181 NPLIIADESI NKTKFRDPTT AWMGKDGHWR IVMGSLRKHS RGLAIMYRSK DFMKWVKAKH 241 PLHSTNGTGN WECPDFYPVS SKGTDGLDQY GEEHKYVLKN SMDLTRFEYY TLGKYDTKKD 301 RYVPDPDSVD SLKGLRLDYG NFYASKSFYD PSKNRRVIWG WSNESDIFPE DDNAKGWAGI 361 QLIPRKVWLD PSGKQLVQWP VEELETLRTQ KVQLSNKKMN NGEKIEVTGI TPAQADVEVT 421 FSFASLDKAE SFDPKWNDMY AQDVCGLKGA DVQGGLGPFG LATLATENLE ENTPVFFRVF 481 KAQQNYKVLL CSDAKRSTLK FNETMYKASF AGFVDVDLAD KKLSLRSLID NSVIETFGAG 541 GKTCITSRVY PTLAINDEAH LFAFNNGTEP ITIESLDAWS MGKAKIQY- AGS-2 (49656 49886,50115 50151,50485 50888) SCR (e 0.996 d 1.000 a 0.000,e 0.973 d 1.000 a 0.813,e 0.962) Exon 1 49656 49886 ( 231 n); score: 0.996 Intron 1 49887 50114 ( 228 n); Pd: 1.000 Pa: 0.000 Exon 2 50115 50151 ( 37 n); score: 0.973 Intron 2 50152 50484 ( 333 n); Pd: 1.000 Pa: 0.813 Exon 3 50485 50888 ( 404 n); score: 0.962 PGS (49656 49886,50115 50151,50485 50888) SGN-E547397+ 3-phase translation of AGS-2 (+strand): . . . . . . 49656 CAAAGCCCAATCATTAAAATAAAATAAAAATTATGGATTATTCATCTAATAAAAGTTCTC Q S P I I K I K - K L W I I H L I K V L K A Q S L K - N K N Y G L F I - - K F S K P N H - N K I K I M D Y S S N K S S . . . . . . 49716 GTTGGGCTTTGCCAGTTATCTTAGTTTGCTTTTTTGTAATTTTATTATCCAATAATGTTG V G L C Q L S - F A F L - F Y Y P I M L L G F A S Y L S L L F C N F I I Q - C C R W A L P V I L V C F F V I L L S N N V . . . . . . 49776 TTTTTGCTTCTCATAAAGTTTTTATTCACTTGCAATCTCAAAATGCTGTAAATGTTCATA F L L L I K F L F T C N L K M L - M F I F C F S - S F Y S L A I S K C C K C S Y V F A S H K V F I H L Q S Q N A V N V H . . . . . . : 49836 CTGTTCATCGAACTGGTTATCATTTTCAGCCCGAAAAACATTGGATCAATG : GATGTCTCT L F I E L V I I F S P K N I G S M : D V S C S S N W L S F S A R K T L D Q W : M S L T V H R T G Y H F Q P E K H W I N : G C L . . . : . . . 50124 TGGTCAAAACATACAATAGATCCCAATG : CACCAATGTATTTCAATGGAGTGTATCATCTA W S K H T I D P N : A P M Y F N G V Y H L G Q N I Q - I P M : H Q C I S M E C I I Y L V K T Y N R S Q C : T N V F Q W S V S S . . . . . . 50517 TTCTACCAGTACAACCCAAATGGTTCAGTATGGGGTAACATTGTTTGGGCTCATTCCGTT F Y Q Y N P N G S V W G N I V W A H S V S T S T T Q M V Q Y G V T L F G L I P F I L P V Q P K W F S M G - H C L G S F R . . . . . . 50577 TCAAAAGACTTGATCAATTGGATCAATTTAGAACCTGCAATTTACCCATCAAAGCCATTT S K D L I N W I N L E P A I Y P S K P F Q K T - S I G S I - N L Q F T H Q S H L F K R L D Q L D Q F R T C N L P I K A I . . . . . . 50637 GATCAATTCGGTACCTGGTCTGGATCAGCAACCATCCTACCTGGTAACAAGCCAGTCATC D Q F G T W S G S A T I L P G N K P V I I N S V P G L D Q Q P S Y L V T S Q S S - S I R Y L V W I S N H P T W - Q A S H . . . . . . 50697 TTGTACACCGGAATCATAGATGCCAACCAAACCCAAGTCCAAAACTACGCAATCCCAGCT L Y T G I I D A N Q T Q V Q N Y A I P A C T P E S - M P T K P K S K T T Q S Q L L V H R N H R C Q P N P S P K L R N P S . . . . . . 50757 AACTTATCCGATCCATATCTCCGCGAATGGATCAAGCCAGACAACAACCCATTAATTATA N L S D P Y L R E W I K P D N N P L I I T Y P I H I S A N G S S Q T T T H - L - - L I R S I S P R M D Q A R Q Q P I N Y . . . . . . 50817 GCCGATGAAAGTATCAACAAGACCAAGTTTCGTGACCCAACAACAGCATGGATGGGTAAA A D E S I N K T K F R D P T T A W M G K P M K V S T R P S F V T Q Q Q H G W V K S R - K Y Q Q D Q V S - P N N S M D G - . . 50877 GACGGGCATTGG D G H W T G I R R A L Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-10_AGS-2_PPS_1 (49827 49886,50115 50151,50485 50888) (frame '1'; 501 bp, 167 residues) 1 MFILFIELVI IFSPKNIGSM DVSWSKHTID PNAPMYFNGV YHLFYQYNPN GSVWGNIVWA 61 HSVSKDLINW INLEPAIYPS KPFDQFGTWS GSATILPGNK PVILYTGIID ANQTQVQNYA 121 IPANLSDPYL REWIKPDNNP LIIADESINK TKFRDPTTAW MGKDGHW PGL 11 (- strand): 55214 53884 AGS-1 (55214 53884) SCR (e 1.000) Exon 1 55214 53884 (1331 n); score: 1.000 PGS (54218 53884) SGN-E225196- PGS (54584 54060) SGN-E251861+ PGS (54862 54463) SGN-E207863+ PGS (55214 54470) SGN-E340059+ 3-phase translation of AGS-1 (-strand): . . . . . . 55214 CTGTTGAAAATGAAAGTTGCTATCTTTTTGTTCCAACAAAAGATGCTTTGAATCTCCCTA L L K M K V A I F L F Q Q K M L - I S L C - K - K L L S F C S N K R C F E S P - V E N E S C Y L F V P T K D A L N L P . . . . . . 55154 ATTTAGATGTGGTTTGCAGTATATTTCTATTTATATTCATAACATAACTTTGCTATGGCA I - M W F A V Y F Y L Y S - H N F A M A F R C G L Q Y I S I Y I H N I T L L W Q N L D V V C S I F L F I F I T - L C Y G . . . . . . 55094 AGAATGATGATAAACTATTAGATGTGTGAGTGGTGTATTCCTCTATGAGCTCAATCATCG R M M I N Y - M C E W C I P L - A Q S S E - - - T I R C V S G V F L Y E L N H R K N D D K L L D V - V V Y S S M S S I I . . . . . . 55034 AGGCTTATTGATATTCTGACTTGCCTTCTTAAAGTACTTACAATAGAAATAAATGGAACT R L I D I L T C L L K V L T I E I N G T G L L I F - L A F L K Y L Q - K - M E L E A Y - Y S D L P S - S T Y N R N K W N . . . . . . 54974 TTTTAATTTTGTGTTCTACAAATATGCTTCATTATTGCATTTGTACTAATTTTTCACTTG F - F C V L Q I C F I I A F V L I F H L F N F V F Y K Y A S L L H L Y - F F T - F L I L C S T N M L H Y C I C T N F S L . . . . . . 54914 AAGTTGTAGCAAATTGTTAAGTTGAAATATTTATCTGATTTAGACCTTAACTGAAGTTAC K L - Q I V K L K Y L S D L D L N - S Y S C S K L L S - N I Y L I - T L T E V T E V V A N C - V E I F I - F R P - L K L . . . . . . 54854 ACGTCAGGATATAGCCCATACTTTTTGTGGTGTCACATCCGTTGTTGATTCTACTTTTTT T S G Y S P Y F L W C H I R C - F Y F F R Q D I A H T F C G V T S V V D S T F F H V R I - P I L F V V S H P L L I L L F . . . . . . 54794 CTAGTTGAGGTGGAATTTGTGCTATATTTAGCCTTTGCTATGGCAAGCATGATGAAAAAC L V E V E F V L Y L A F A M A S M M K N - L R W N L C Y I - P L L W Q A - - K T S S - G G I C A I F S L C Y G K H D E K . . . . . . 54734 AATTAGATGTGCGAGTGGTGAATTCCTCTATGAGCTCAATCATCGAGGCTTATTGATATT N - M C E W - I P L - A Q S S R L I D I I R C A S G E F L Y E L N H R G L L I F Q L D V R V V N S S M S S I I E A Y - Y . . . . . . 54674 CTGACTTGCATTTGTGATTCACTCTTTTATTTTTTGATTTACATGGTGTTCATTGATCCC L T C I C D S L F Y F L I Y M V F I D P - L A F V I H S F I F - F T W C S L I P S D L H L - F T L L F F D L H G V H - S . . . . . . 54614 TTAATTTTTGTTGGACCTAACTATGACTATAAAAGTTCATTATTAACATTACTAACAGAA L I F V G P N Y D Y K S S L L T L L T E - F L L D L T M T I K V H Y - H Y - Q K L N F C W T - L - L - K F I I N I T N R . . . . . . 54554 GATTTTGATGTAAATTATTATTAAATATATAATTTGGCTTCTTTTGGCATTTATAGTTAA D F D V N Y Y - I Y N L A S F G I Y S - I L M - I I I K Y I I W L L L A F I V N R F - C K L L L N I - F G F F W H L - L . . . . . . 54494 TTTTAGGTAGGTATGGGAATGATGAATATCTGTTGTGTGAAGGGAGAACTCCCTGTTGAA F - V G M G M M N I C C V K G E L P V E F R - V W E - - I S V V - R E N S L L N I L G R Y G N D E Y L L C E G R T P C - . . . . . . 54434 TGTTTACACTAACTGCTTATTGATATTCTGAGCTTTCTCTTTTGATATTGTGCATCCATA C L H - L L I D I L S F L F - Y C A S I V Y T N C L L I F - A F S F D I V H P - M F T L T A Y - Y S E L S L L I L C I H . . . . . . 54374 ATGTATTTGTTTCCACTCTTTCTTTCTTCCTGGTGTATTTTTTGTGTGTAGGTGATCTGC M Y L F P L F L S S W C I F C V - V I C C I C F H S F F L P G V F F V C R - S A N V F V S T L S F F L V Y F L C V G D L . . . . . . 54314 TAATACACTTTGGTAATTCAATTTATGGCAAGAATGATGAGTCTATTAGATGTGCCAGGG - Y T L V I Q F M A R M M S L L D V P G N T L W - F N L W Q E - - V Y - M C Q G L I H F G N S I Y G K N D E S I R C A R . . . . . . 54254 TTTTTTCCCCAATGAGCTAAAACTTCTGAGGCTTATTGATATTCTGACTTGCCAACATAA F F P Q - A K T S E A Y - Y S D L P T - F F P N E L K L L R L I D I L T C Q H N V F S P M S - N F - G L L I F - L A N I . . . . . . 54194 TTCAAGAACCTTTGTTCCCACATCATCTTGTTTCTTTTTTTTCGACACAGCTGAGGCAAC F K N L C S H I I L F L F F R H S - G N S R T F V P T S S C F F F F D T A E A T I Q E P L F P H H L V S F F S T Q L R Q . . . . . . 54134 ATGTTTCGTCTGTCTGAGCAACAGCAACAGATCAGTTTTCTGTGTCCATTCATTACAAAG M F R L S E Q Q Q Q I S F L C P F I T K C F V C L S N S N R S V F C V H S L Q S H V S S V - A T A T D Q F S V S I H Y K . . . . . . 54074 TTCATCTCTTTTTTTTTGTTTGACTTATTTGTGTTTTCATAGTATATATCATATTTATTT F I S F F L F D L F V F S - Y I S Y L F S S L F F C L T Y L C F H S I Y H I Y F V H L F F F V - L I C V F I V Y I I F I . . . . . . 54014 CTACTTTGTTAATGATAAGGAGGAATTATGTATATGCAAGAGTCAGCAAATGACTCTGTG L L C - - - G G I M Y M Q E S A N D S V Y F V N D K E E L C I C K S Q Q M T L - S T L L M I R R N Y V Y A R V S K - L C . . . . . . 53954 AGCTCCAATATTTATGCTAATGTATTCTGACTTACCAAACATTTTATACCTTTCAATGTT S S N I Y A N V F - L T K H F I P F N V A P I F M L M Y S D L P N I L Y L S M F E L Q Y L C - C I L T Y Q T F Y T F Q C . . 53894 TTGTAGATTTT L - I C R F F V D F Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-11_AGS-1_PPS_1 (54265 53954) (frame '2'; 309 bp, 103 residues) 1 MCQGFFPNEL KLLRLIDILT CQHNSRTFVP TSSCFFFFDT AEATCFVCLS NSNRSVFCVH 61 SLQSSSLFFC LTYLCFHSIY HIYFYFVNDK EELCICKSQQ MTL- 3-phase translation of AGS-1 (+strand): . . . . . . 53884 AAAATCTACAAAACATTGAAAGGTATAAAATGTTTGGTAAGTCAGAATACATTAGCATAA K I Y K T L K G I K C L V S Q N T L A - K S T K H - K V - N V W - V R I H - H K N L Q N I E R Y K M F G K S E Y I S I . . . . . . 53944 ATATTGGAGCTCACAGAGTCATTTGCTGACTCTTGCATATACATAATTCCTCCTTATCAT I L E L T E S F A D S C I Y I I P P Y H Y W S S Q S H L L T L A Y T - F L L I I N I G A H R V I C - L L H I H N S S L S . . . . . . 54004 TAACAAAGTAGAAATAAATATGATATATACTATGAAAACACAAATAAGTCAAACAAAAAA - Q S R N K Y D I Y Y E N T N K S N K K N K V E I N M I Y T M K T Q I S Q T K K L T K - K - I - Y I L - K H K - V K Q K . . . . . . 54064 AAAGAGATGAACTTTGTAATGAATGGACACAGAAAACTGATCTGTTGCTGTTGCTCAGAC K E M N F V M N G H R K L I C C C C S D K R - T L - - M D T E N - S V A V A Q T K R D E L C N E W T Q K T D L L L L L R . . . . . . 54124 AGACGAAACATGTTGCCTCAGCTGTGTCGAAAAAAAAGAAACAAGATGATGTGGGAACAA R R N M L P Q L C R K K R N K M M W E Q D E T C C L S C V E K K E T R - C G N K Q T K H V A S A V S K K K K Q D D V G T . . . . . . 54184 AGGTTCTTGAATTATGTTGGCAAGTCAGAATATCAATAAGCCTCAGAAGTTTTAGCTCAT R F L N Y V G K S E Y Q - A S E V L A H G S - I M L A S Q N I N K P Q K F - L I K V L E L C W Q V R I S I S L R S F S S . . . . . . 54244 TGGGGAAAAAACCCTGGCACATCTAATAGACTCATCATTCTTGCCATAAATTGAATTACC W G K N P G T S N R L I I L A I N - I T G E K T L A H L I D S S F L P - I E L P L G K K P W H I - - T H H S C H K L N Y . . . . . . 54304 AAAGTGTATTAGCAGATCACCTACACACAAAAAATACACCAGGAAGAAAGAAAGAGTGGA K V Y - Q I T Y T Q K I H Q E E R K S G K C I S R S P T H K K Y T R K K E R V E Q S V L A D H L H T K N T P G R K K E W . . . . . . 54364 AACAAATACATTATGGATGCACAATATCAAAAGAGAAAGCTCAGAATATCAATAAGCAGT N K Y I M D A Q Y Q K R K L R I S I S S T N T L W M H N I K R E S S E Y Q - A V K Q I H Y G C T I S K E K A Q N I N K Q . . . . . . 54424 TAGTGTAAACATTCAACAGGGAGTTCTCCCTTCACACAACAGATATTCATCATTCCCATA - C K H S T G S S P F T Q Q I F I I P I S V N I Q Q G V L P S H N R Y S S F P Y L V - T F N R E F S L H T T D I H H S H . . . . . . 54484 CCTACCTAAAATTAACTATAAATGCCAAAAGAAGCCAAATTATATATTTAATAATAATTT P T - N - L - M P K E A K L Y I - - - F L P K I N Y K C Q K K P N Y I F N N N L T Y L K L T I N A K R S Q I I Y L I I I . . . . . . 54544 ACATCAAAATCTTCTGTTAGTAATGTTAATAATGAACTTTTATAGTCATAGTTAGGTCCA T S K S S V S N V N N E L L - S - L G P H Q N L L L V M L I M N F Y S H S - V Q Y I K I F C - - C - - - T F I V I V R S . . . . . . 54604 ACAAAAATTAAGGGATCAATGAACACCATGTAAATCAAAAAATAAAAGAGTGAATCACAA T K I K G S M N T M - I K K - K S E S Q Q K L R D Q - T P C K S K N K R V N H K N K N - G I N E H H V N Q K I K E - I T . . . . . . 54664 ATGCAAGTCAGAATATCAATAAGCCTCGATGATTGAGCTCATAGAGGAATTCACCACTCG M Q V R I S I S L D D - A H R G I H H S C K S E Y Q - A S M I E L I E E F T T R N A S Q N I N K P R - L S S - R N S P L . . . . . . 54724 CACATCTAATTGTTTTTCATCATGCTTGCCATAGCAAAGGCTAAATATAGCACAAATTCC H I - L F F I M L A I A K A K Y S T N S T S N C F S S C L P - Q R L N I A Q I P A H L I V F H H A C H S K G - I - H K F . . . . . . 54784 ACCTCAACTAGAAAAAAGTAGAATCAACAACGGATGTGACACCACAAAAAGTATGGGCTA T S T R K K - N Q Q R M - H H K K Y G L P Q L E K S R I N N G C D T T K S M G Y H L N - K K V E S T T D V T P Q K V W A . . . . . . 54844 TATCCTGACGTGTAACTTCAGTTAAGGTCTAAATCAGATAAATATTTCAACTTAACAATT Y P D V - L Q L R S K S D K Y F N L T I I L T C N F S - G L N Q I N I S T - Q F I S - R V T S V K V - I R - I F Q L N N . . . . . . 54904 TGCTACAACTTCAAGTGAAAAATTAGTACAAATGCAATAATGAAGCATATTTGTAGAACA C Y N F K - K I S T N A I M K H I C R T A T T S S E K L V Q M Q - - S I F V E H L L Q L Q V K N - Y K C N N E A Y L - N . . . . . . 54964 CAAAATTAAAAAGTTCCATTTATTTCTATTGTAAGTACTTTAAGAAGGCAAGTCAGAATA Q N - K V P F I S I V S T L R R Q V R I K I K K F H L F L L - V L - E G K S E Y T K L K S S I Y F Y C K Y F K K A S Q N . . . . . . 55024 TCAATAAGCCTCGATGATTGAGCTCATAGAGGAATACACCACTCACACATCTAATAGTTT S I S L D D - A H R G I H H S H I - - F Q - A S M I E L I E E Y T T H T S N S L I N K P R - L S S - R N T P L T H L I V . . . . . . 55084 ATCATCATTCTTGCCATAGCAAAGTTATGTTATGAATATAAATAGAAATATACTGCAAAC I I I L A I A K L C Y E Y K - K Y T A N S S F L P - Q S Y V M N I N R N I L Q T Y H H S C H S K V M L - I - I E I Y C K . . . . . . 55144 CACATCTAAATTAGGGAGATTCAAAGCATCTTTTGTTGGAACAAAAAGATAGCAACTTTC H I - I R E I Q S I F C W N K K I A T F T S K L G R F K A S F V G T K R - Q L S P H L N - G D S K H L L L E Q K D S N F . . 55204 ATTTTCAACAG I F N F S T H F Q Q Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2+_PGL-11_AGS-1_PPS_1 (54051 54269) (frame '0'; 216 bp, 72 residues) 1 VKQKKRDELC NEWTQKTDLL LLLRQTKHVA SAVSKKKKQD DVGTKVLELC WQVRISISLR 61 SFSSLGKKPW HI- >C09HBa0168F14.1-2+_PGL-11_AGS-1_PPS_2 (54007 54222) (frame '1'; 213 bp, 71 residues) 1 QSRNKYDIYY ENTNKSNKKK EMNFVMNGHR KLICCCCSDR RNMLPQLCRK KRNKMMWEQR 61 FLNYVGKSEY Q- PGL 12 (- strand): 56588 56154 AGS-1 (56588 56154) SCR (e 1.000) Exon 1 56588 56154 ( 435 n); score: 1.000 PGS (56588 56154) SGN-E334450+ 3-phase translation of AGS-1 (-strand): . . . . . . 56588 TTAAAAATTGTTTTTTTTGTATGTGAAGTGTGTATGATGCGTGGATTGATCAAAATGCTA L K I V F F V C E V C M M R G L I K M L - K L F F L Y V K C V - C V D - S K C Y K N C F F C M - S V Y D A W I D Q N A . . . . . . 56528 TTGGGTATGCATTAATTTCTCTTAAAGATGTGATTTTTGGAATATGTTGCAACATTTTGA L G M H - F L L K M - F L E Y V A T F - W V C I N F S - R C D F W N M L Q H F D I G Y A L I S L K D V I F G I C C N I L . . . . . . 56468 TCGATTGGAGCTATATAACAAAGTGTGTTGTGTATGGATTAATTTGTTTCATTTTGCGCC S I G A I - Q S V L C M D - F V S F C A R L E L Y N K V C C V W I N L F H F A P I D W S Y I T K C V V Y G L I C F I L R . . . . . . 56408 GCCCTTAAGATCGCCTTCCATTATGCTCCATGGAAGCGTTTTGAGTCATAGCTGCGCTAT A L K I A F H Y A P W K R F E S - L R Y P L R S P S I M L H G S V L S H S C A I R P - D R L P L C S M E A F - V I A A L . . . . . . 56348 ATTAATTGTATATATGCACACTCTTTTGTATGTACAATTGTATATATGAAAGGTGTGTTA I N C I Y A H S F V C T I V Y M K G V L L I V Y M H T L L Y V Q L Y I - K V C Y Y - L Y I C T L F C M Y N C I Y E R C V . . . . . . 56288 TATGCTGGAGTTTTCTCTTTAGGGTTTTCCTTTAGTGAGTCTCCTTTTGCCTCGCCTTAT Y A G V F S L G F S F S E S P F A S P Y M L E F S L - G F P L V S L L L P R L I I C W S F L F R V F L - - V S F C L A L . . . . . . 56228 TTCAGGAGTCATATCCTTTTTTTTTGGTTTTGTCTTTCCCAATTGGGGATATAGAACCAA F R S H I L F F W F C L S Q L G I - N Q S G V I S F F F G F V F P N W G Y R T K F Q E S Y P F F L V L S F P I G D I E P . . 56168 AAGATGTTTTGAATG K M F - M R C F E K D V L N Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-12_AGS-1_PPS_1 (56503 56300) (frame '2'; 201 bp, 67 residues) 1 RCDFWNMLQH FDRLELYNKV CCVWINLFHF APPLRSPSIM LHGSVLSHSC AILIVYMHTL 61 LYVQLYI- 3-phase translation of AGS-1 (+strand): . . . . . . 56154 CATTCAAAACATCTTTTGGTTCTATATCCCCAATTGGGAAAGACAAAACCAAAAAAAAAG H S K H L L V L Y P Q L G K T K P K K K I Q N I F W F Y I P N W E R Q N Q K K R F K T S F G S I S P I G K D K T K K K . . . . . . 56214 GATATGACTCCTGAAATAAGGCGAGGCAAAAGGAGACTCACTAAAGGAAAACCCTAAAGA D M T P E I R R G K R R L T K G K P - R I - L L K - G E A K G D S L K E N P K E G Y D S - N K A R Q K E T H - R K T L K . . . . . . 56274 GAAAACTCCAGCATATAACACACCTTTCATATATACAATTGTACATACAAAAGAGTGTGC E N S S I - H T F H I Y N C T Y K R V C K T P A Y N T P F I Y T I V H T K E C A R K L Q H I T H L S Y I Q L Y I Q K S V . . . . . . 56334 ATATATACAATTAATATAGCGCAGCTATGACTCAAAACGCTTCCATGGAGCATAATGGAA I Y T I N I A Q L - L K T L P W S I M E Y I Q L I - R S Y D S K R F H G A - W K H I Y N - Y S A A M T Q N A S M E H N G . . . . . . 56394 GGCGATCTTAAGGGCGGCGCAAAATGAAACAAATTAATCCATACACAACACACTTTGTTA G D L K G G A K - N K L I H T Q H T L L A I L R A A Q N E T N - S I H N T L C Y R R S - G R R K M K Q I N P Y T T H F V . . . . . . 56454 TATAGCTCCAATCGATCAAAATGTTGCAACATATTCCAAAAATCACATCTTTAAGAGAAA Y S S N R S K C C N I F Q K S H L - E K I A P I D Q N V A T Y S K N H I F K R N I - L Q S I K M L Q H I P K I T S L R E . . . . . . 56514 TTAATGCATACCCAATAGCATTTTGATCAATCCACGCATCATACACACTTCACATACAAA L M H T Q - H F D Q S T H H T H F T Y K - C I P N S I L I N P R I I H T S H T K I N A Y P I A F - S I H A S Y T L H I Q . . 56574 AAAAACAATTTTTAA K N N F - K T I F K K Q F L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 13 (- strand): 60374 57781 AGS-1 (60374 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57781) SCR (e 1.000 d 0.991 a 1.000,e 1.000 d 0.008 a 0.995,e 1.000 d 0.993 a 1.000,e 1.000 d 0.989 a 1.000,e 1.000 d 0.971 a 0.998,e 1.000) Exon 1 60374 60311 ( 64 n); score: 1.000 Intron 1 60310 60183 ( 128 n); Pd: 0.991 Pa: 1.000 Exon 2 60182 60063 ( 120 n); score: 1.000 Intron 2 60062 59964 ( 99 n); Pd: 0.008 Pa: 0.995 Exon 3 59963 59918 ( 46 n); score: 1.000 Intron 3 59917 59473 ( 445 n); Pd: 0.993 Pa: 1.000 Exon 4 59472 59387 ( 86 n); score: 1.000 Intron 4 59386 58377 (1010 n); Pd: 0.989 Pa: 1.000 Exon 5 58376 58247 ( 130 n); score: 1.000 Intron 5 58246 58120 ( 127 n); Pd: 0.971 Pa: 0.998 Exon 6 58119 57781 ( 339 n); score: 1.000 PGS (60362 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57781) SGN-E346787+ PGS (58328 58247,58119 57781) SGN-E339097+ PGS (59946 59918,59472 59387,58376 58247,58119 57789) SGN-E250400+ PGS (60098 60063,59963 59918,59472 59387,58376 58247,58119 57790) SGN-E251038- PGS (60117 60063,59963 59918,59472 59387,58376 58247,58119 57791) SGN-E252705- PGS (60105 60063,59963 59918,59472 59387,58376 58247,58119 57800) SGN-E302621- PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57801) SGN-E328964+ PGS (60083 60063,59963 59918,59472 59387,58376 58247,58119 57808) SGN-E284928- PGS (58282 58247,58119 57818) SGN-E298315+ PGS (58075 57819) SGN-E216159- PGS (58075 57819) SGN-E216401- PGS (58094 57820) SGN-E224691- PGS (59472 59387,58376 58247,58119 57821) SGN-E203238- PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57826) SGN-E345976+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57841) SGN-E545733- PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57841) SGN-E545734+ PGS (59473 59387,58376 58247,58119 57841) SGN-E282245+ PGS (58263 58247,58119 57841) SGN-E355415+ PGS (58062 57841) SGN-E301654+ PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57845) SGN-E339186+ PGS (60107 60063,59963 59918,59472 59387,58376 58247,58119 57860) SGN-E341266+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57862) SGN-E345234+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57863) SGN-E348079+ PGS (60355 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57878) SGN-E302620+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57882) SGN-E346811+ PGS (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57890) SGN-E345236+ PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57927) SGN-E328300+ PGS (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57927) SGN-E340828+ PGS (60372 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57942) SGN-E346699+ PGS (60371 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57942) SGN-E340321+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 57943) SGN-E371544- PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) SGN-E371866- PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) SGN-E542110- PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) SGN-E371790+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 57946) SGN-E339478+ PGS (60093 60063,59963 59918,59472 59387,58376 58247,58119 57946) SGN-E266233- PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57949) SGN-E325907+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57949) SGN-E303491+ PGS (60346 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57952) SGN-E290481+ PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57959) SGN-E326125+ PGS (60129 60063,59963 59918,59472 59387,58376 58247,58119 57964) SGN-E289564+ PGS (60345 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 57989) SGN-E282960+ PGS (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58008) SGN-E311983+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58017) SGN-E347697+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58019) SGN-E325916+ PGS (60369 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58020) SGN-E304843+ PGS (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58023) SGN-E310002+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58051) SGN-E309144- PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58051) SGN-E309143+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58052) SGN-E548660+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58052) SGN-E346978+ PGS (60129 60063,59963 59918,59472 59387,58376 58247,58119 58068) SGN-E293906+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58075) SGN-E285335+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58076) SGN-E315007+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58083) SGN-E303551+ PGS (60128 60063,59963 59918,59472 59387,58376 58247,58119 58083) SGN-E341349+ PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) SGN-E241611+ PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) SGN-E284776+ PGS (60359 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58085) SGN-E318951+ PGS (60182 60063,59963 59918,59472 59387,58376 58247,58119 58088) SGN-E378549+ PGS (60344 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58103) SGN-E313842+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58104) SGN-E312789+ PGS (60366 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58110) SGN-E336882+ PGS (60365 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58110) SGN-E296899+ PGS (60374 60311,60182 60063,59963 59918,59472 59387,58376 58248) SGN-E338890+ PGS (60367 60311,60182 60063,59963 59918,59472 59387,58376 58250) SGN-E312500+ PGS (60351 60311,60182 60063,59963 59918,59472 59387,58376 58297) SGN-E307165+ PGS (58376 58307) SGN-E209230- PGS (60182 60063,59963 59918,59472 59387,58376 58317) SGN-E259932+ PGS (60182 60063,59963 59918,59472 59387,58376 58319) SGN-E309460+ PGS (60177 60063,59963 59918,59472 59387,58376 58319) SGN-E309012+ PGS (60182 60063,59963 59918,59472 59387,58376 58321) SGN-E282602+ PGS (60370 60311,60182 60063,59963 59918,59472 59387,58376 58333) SGN-E336598+ PGS (60364 60311,60182 60063,59963 59918,59472 59387,58376 58335) SGN-E327157+ PGS (60360 60311,60182 60063,59963 59918,59472 59387,58376 58337) SGN-E289778+ PGS (60182 60063,59963 59918,59472 59387,58376 58339) SGN-E288856+ PGS (60364 60311,60182 60063,59963 59918,59472 59387) SGN-E279237+ PGS (60366 60311,60182 60063,59963 59950) SGN-E327322+ 3-phase translation of AGS-1 (-strand): . . . . . . 60374 AGGGTTTCTTCAAGCTGCTGAGTATCTCTGAATTTTCTCACTATCAAGCTCAGCTGAAGC R V S S S C - V S L N F L T I K L S - S G F L Q A A E Y L - I F S L S S S A E A G F F K L L S I S E F S H Y Q A Q L K . : . . . . . 60314 CATG : TCGAGGAGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAAC H : V E E K D Q G A - G R D C Y T W T S N M : S R R K T R E P K E E T V T L G P A T P C : R G E R P G S L R K R L L H L D Q Q . . . . . . 60126 GAGGGAAGGTGAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATT E G R - I G V R C C T H F C I V Q - Y I R E G E L V F G V A H I F A S F N D T F R G K V N W C S V L H T F L H R S M I H . : . . . . : . 60066 CATT : CACGTTACTGATTTGTCTGGAAGAGAAACTATGGTTCGCATTACTG : GTGGAATGAA H : S R Y - F V W K R N Y G S H Y W : W N E I : H V T D L S G R E T M V R I T : G G M K S F : T L L I C L E E K L W F A L L : V E - . . . . . . 59462 GGTGAAGGCTGACAGAGATGAGTCTTCTCCGTATGCTGCTATGCTTGCAGCTCAGGATGT G E G - Q R - V F S V C C Y A C S S G C V K A D R D E S S P Y A A M L A A Q D V R - R L T E M S L L R M L L C L Q L R M . . : . . . . 59402 GTCACAGCGATGCAAG : GAACTTGGAATTAATGCTCTTCACATTAAGCTCCGAGCTACAGG V T A M Q : G T W N - C S S H - A P S Y R S Q R C K : E L G I N A L H I K L R A T G C H S D A R : N L E L M L F T L S S E L Q . . . . . . 58332 AGGCAACAAGACCAAGACTCCTGGTCCTGGTGCCCAGTCCGCTCTTAGAGCTTTGGCTCG R Q Q D Q D S W S W C P V R S - S F G S G N K T K T P G P G A Q S A L R A L A R E A T R P R L L V L V P S P L L E L W L . . . : . . . 58272 TTCTGGCATGAAAATTGGACGTATAG : AGGATGTTACTCCAATTCCCACCGATAGTACTCG F W H E N W T Y R : G C Y S N S H R - Y S S G M K I G R I : E D V T P I P T D S T R V L A - K L D V - : R M L L Q F P P I V L . . . . . . 58085 CAGAAAGGGTGGTAGAAGGGGAAGGAGGCTGTGAAGACTCTTTCTCTTTTCTGCAGCATG Q K G W - K G K E A V K T L S L F C S M R K G G R R G R R L - R L F L F S A A C A E R V V E G E G G C E D S F S F L Q H . . . . . . 58025 TTGCAAATTGGAGGAAAATATTGTTGTCGAAAAATGCAGCTTTCGATATCTATTTACATT L Q I G G K Y C C R K M Q L S I S I Y I C K L E E N I V V E K C S F R Y L F T F V A N W R K I L L S K N A A F D I Y L H . . . . . . 57965 TGATTTCTGAACACTCTGTAGTTGAGCACTTTTGGTTTCGAAACCACCTTCATTTTGAGT - F L N T L - L S T F G F E T T F I L S D F - T L C S - A L L V S K P P S F - V L I S E H S V V E H F W F R N H L H F E . . . . . . 57905 TTGCCAGCTTTTCGAGATAGTTAAGTTCTCTTAAATTTGGTTTATGCAGGCTAATTGTTG L P A F R D S - V L L N L V Y A G - L L C Q L F E I V K F S - I W F M Q A N C W F A S F S R - L S S L K F G L C R L I V . . . . . . 57845 GATAAATTTATACTCTTTTTATCTTCACAATTCTGTTAGTTATAAAGCTTTATTTCATTA D K F I L F L S S Q F C - L - S F I S L I N L Y S F Y L H N S V S Y K A L F H Y G - I Y T L F I F T I L L V I K L Y F I . 57785 TGGAT W G M D Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-13_AGS-1_PPS_1 (60343 60311,60182 60063,59963 59918,59472 59387,58376 58247,58119 58052) (frame '2'; 480 bp, 160 residues) 1 IFSLSSSAEA MSRRKTREPK EETVTLGPAT REGELVFGVA HIFASFNDTF IHVTDLSGRE 61 TMVRITGGMK VKADRDESSP YAAMLAAQDV SQRCKELGIN ALHIKLRATG GNKTKTPGPG 121 AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL - AGS-2 (60236 60063,59963 59947) SCR (e 0.989 d 0.008 a 0.995,e 1.000) Exon 1 60236 60063 ( 174 n); score: 0.989 Intron 1 60062 59964 ( 99 n); Pd: 0.008 Pa: 0.995 Exon 2 59963 59947 ( 17 n); score: 1.000 PGS (60236 60063,59963 59947) SGN-E337832+ 3-phase translation of AGS-2 (-strand): . . . . . . 60236 TTTGATTAATTTGAATTGAAAAACTGTATGTTCGATGAAATTGTTTGTTTGTAGTCGAGG F D - F E L K N C M F D E I V C L - S R L I N L N - K T V C S M K L F V C S R G - L I - I E K L Y V R - N C L F V V E . . . . . . 60176 AGAAAGACCAGGGAGCCTAAGGAAGAGACTGTTACACTTGGACCAGCAACGAGGGAAGGT R K T R E P K E E T V T L G P A T R E G E R P G S L R K R L L H L D Q Q R G K V E K D Q G A - G R D C Y T W T S N E G R . . . . . . : 60116 GAATTGGTGTTCGGTGTTGCACACATTTTTGCATCGTTCAATGATACATTCATT : CACGTT E L V F G V A H I F A S F N D T F I : H V N W C S V L H T F L H R S M I H S F : T L - I G V R C C T H F C I V Q - Y I H : S R . . 59957 ACTGATTTGTC T D L L I C Y - F V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 14 (- strand): 63345 61864 AGS-1 (63345 63297,63161 63085,62874 62747,62602 62469,62054 61864) SCR (e 1.000 d 0.000 a 0.997,e 1.000 d 0.989 a 0.476,e 1.000 d 0.949 a 0.996,e 1.000 d 0.996 a 0.989,e 1.000) Exon 1 63345 63297 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 Pa: 0.997 Exon 2 63161 63085 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 Pa: 0.476 Exon 3 62874 62747 ( 128 n); score: 1.000 Intron 3 62746 62603 ( 144 n); Pd: 0.949 Pa: 0.996 Exon 4 62602 62469 ( 134 n); score: 1.000 Intron 4 62468 62055 ( 414 n); Pd: 0.996 Pa: 0.989 Exon 5 62054 61864 ( 191 n); score: 1.000 PGS (63345 63297,63161 63085,62874 62747,62602 62469,62054 61864) SGN-E551898+ PGS (62831 62747,62602 62469,62054 61871) SGN-E238878- PGS (62563 62469,62054 61871) SGN-E239377- PGS (63345 63297,63161 63085,62874 62747,62602 62552) SGN-E244663+ PGS (63345 63297,63161 63085,62874 62747) SGN-E300531+ PGS (63345 63297,63161 63085,62874 62806) SGN-E377748+ PGS (63345 63297,63161 63092) SGN-E236580+ PGS (63345 63297,63161 63093) SGN-E273561+ 3-phase translation of AGS-1 (-strand): . . . . . : . 63345 TTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA : CTTGAGCTGAA F I Y S W D Y G L R W I T C P S : T - A E S F I A G I M V F G G L L A P V : L E L K H L - L G L W S S V D Y L P Q Y : L S - . . . . . . 63150 ATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCA I R S R R H L I R R F Y T - H A F A Y A L G L G G T S Y E D F I R N M H L P M Q N - V - E A P H T K I L Y V T C I C L C . : . . . . . 63090 ATTGAG : CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTC I E : P G R P H S G V L F R R G S G S H L L S : Q V D P I V A S F S G G A V G V I S N - : A R S T P - W R P F Q A G Q W E S S . . . . . . 62820 AGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATA S P H A N R S - Q C S P T R E E K V Q I A L M L I E A N N V V Q Q E K K K C K Y Q P S C - - K L T M - S N K R R K S A N . . : . . . . 62760 TTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTA L L W K W : V L G M C T M F S K R - M P L C Y G S : G Y L A C A R C S A S G K C L Y I A M E V : G T W H V H D V Q Q A V N A S . . . . . . 62556 TACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAG Y - T N F S E W F L S I V A C T N S - K T E P I S V N G S Y Q S L R A P T L K R I L N Q F Q - M V L I N R C V H Q L L K . . . : . . . 62496 ATGTGCGAATTGCTCCGGGACTGGAAAG : GTAATGTGCCCTACATGTCTGTGTACTGGGAT M C E L L R D W K : G N V P Y M S V Y W D C A N C S G T G K : V M C P T C L C T G M D V R I A P G L E R : - C A L H V C V L G . . . . . . 62022 GGTGATGGCAAGTGAACATGACCTTCGAATAGATCCATTTGATTAAGTACAAATTCTCAT G D G K - T - P S N R S I - L S T N S H V M A S E H D L R I D P F D - V Q I L I W - W Q V N M T F E - I H L I K Y K F S . . . . . . 61962 TTTGTAACTTATATTCATACAAAAAATAATTGGTCATTTTGGTTTTGTTATAAGCATAGT F V T Y I H T K N N W S F W F C Y K H S L - L I F I Q K I I G H F G F V I S I V F C N L Y S Y K K - L V I L V L L - A - . . . . 61902 TATTATATATAGAATATCCTTTGGTTATGAAGATGATAA Y Y I - N I L W L - R - - I I Y R I S F G Y E D D L L Y I E Y P L V M K M I Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-14_AGS-1_PPS_1 (63344 63297,63161 63085,62874 62747,62602 62469,62054 61977) (frame '2'; 462 bp, 154 residues) 1 SFIAGIMVFG GLLAPVLELK LGLGGTSYED FIRNMHLPMQ LSQVDPIVAS FSGGAVGVIS 61 ALMLIEANNV VQQEKKKCKY CYGSGYLACA RCSASGKCLY TEPISVNGSY QSLRAPTLKR 121 CANCSGTGKV MCPTCLCTGM VMASEHDLRI DPFD- AGS-2 (63345 63297,63161 63085,62874 62747,62602 62324) SCR (e 1.000 d 0.000 a 0.997,e 1.000 d 0.989 a 0.476,e 1.000 d 0.949 a 0.996,e 1.000) Exon 1 63345 63297 ( 49 n); score: 1.000 Intron 1 63296 63162 ( 135 n); Pd: 0.000 Pa: 0.997 Exon 2 63161 63085 ( 77 n); score: 1.000 Intron 2 63084 62875 ( 210 n); Pd: 0.989 Pa: 0.476 Exon 3 62874 62747 ( 128 n); score: 1.000 Intron 3 62746 62603 ( 144 n); Pd: 0.949 Pa: 0.996 Exon 4 62602 62324 ( 279 n); score: 1.000 PGS (63345 63297,63161 63085,62874 62747,62602 62324) SGN-E270644+ 3-phase translation of AGS-2 (-strand): . . . . . : . 63345 TTCATTTATAGCTGGGATTATGGTCTTCGGTGGATTACTTGCCCCAGTA : CTTGAGCTGAA F I Y S W D Y G L R W I T C P S : T - A E S F I A G I M V F G G L L A P V : L E L K H L - L G L W S S V D Y L P Q Y : L S - . . . . . . 63150 ATTAGGTCTAGGAGGCACCTCATACGAAGATTTTATACGTAACATGCATTTGCCTATGCA I R S R R H L I R R F Y T - H A F A Y A L G L G G T S Y E D F I R N M H L P M Q N - V - E A P H T K I L Y V T C I C L C . : . . . . . 63090 ATTGAG : CCAGGTCGACCCCATAGTGGCGTCCTTTTCAGGCGGGGCAGTGGGAGTCATCTC I E : P G R P H S G V L F R R G S G S H L L S : Q V D P I V A S F S G G A V G V I S N - : A R S T P - W R P F Q A G Q W E S S . . . . . . 62820 AGCCCTCATGCTAATAGAAGCTAACAATGTAGTCCAACAAGAGAAGAAAAAGTGCAAATA S P H A N R S - Q C S P T R E E K V Q I A L M L I E A N N V V Q Q E K K K C K Y Q P S C - - K L T M - S N K R R K S A N . . : . . . . 62760 TTGCTATGGAAGTG : GGTACTTGGCATGTGCACGATGTTCAGCAAGCGGTAAATGCCTCTA L L W K W : V L G M C T M F S K R - M P L C Y G S : G Y L A C A R C S A S G K C L Y I A M E V : G T W H V H D V Q Q A V N A S . . . . . . 62556 TACTGAACCAATTTCAGTGAATGGTTCTTATCAATCGTTGCGTGCACCAACTCTTAAAAG Y - T N F S E W F L S I V A C T N S - K T E P I S V N G S Y Q S L R A P T L K R I L N Q F Q - M V L I N R C V H Q L L K . . . . . . 62496 ATGTGCGAATTGCTCCGGGACTGGAAAGGTATGAAACATGATCATCTCCCTACTTCATGC M C E L L R D W K G M K H D H L P T S C C A N C S G T G K V - N M I I S L L H A D V R I A P G L E R Y E T - S S P Y F M . . . . . . 62436 ACTCAACAGTCATATTATATCAGTTCAATAAGTAGTAACTTTACAAGAAAAAACAAATAT T Q Q S Y Y I S S I S S N F T R K N K Y L N S H I I S V Q - V V T L Q E K T N I H S T V I L Y Q F N K - - L Y K K K Q I . . . . . . 62376 CTGTGTCTGTTACAATCCGTCCCATAGTCGAGCATCTCAAAAATGTGTGACCG L C L L Q S V P - S S I S K M C D C V C Y N P S H S R A S Q K C V T S V S V T I R P I V E H L K N V - P Maximal non-overlapping open reading frames (>= 64 codons): >C09HBa0168F14.1-2-_PGL-14_AGS-2_PPS_1 (63344 63297,63161 63085,62874 62747,62602 62463) (frame '2'; 390 bp, 130 residues) 1 SFIAGIMVFG GLLAPVLELK LGLGGTSYED FIRNMHLPMQ LSQVDPIVAS FSGGAVGVIS 61 ALMLIEANNV VQQEKKKCKY CYGSGYLACA RCSASGKCLY TEPISVNGSY QSLRAPTLKR 121 CANCSGTGKV - ... finished at: Tue Aug 29 00:58:50 2006