<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 08:33:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607197" ref_strand="+" ref_description="SGN-E607197 [23158]">
      <seq>gaggaattagaggcgaggttgttccctcatcataaattgctaagagacaggacatctctgaagacactaatgggctgtaccaaaaatgaggaacttgaatctgctgaatcaactattgaagtgaagcctgagaagaattatgttagtcctattgatgagaatcctatagctgtggagttcttggcttctcttagtaaggagcagtctaaagttactactaggtgtgaggatgcgtgtttacagatttccaatgttcaagatgtggatgatgcagtaagttcacaaaaccaaatttcttcttcgaaactgttcaaaggaaaagaaattgttgatcatctcctggcaagtgatgagaggcttgaaagttttgatgctcaagagaataaacaagaaatgttgatggaggaagagacagaagatagttctatatgtgagctcaatgagattggccgtaagacatctactggagggtggtttgtctctgagggagaatctgttctccttacacatgatgacagttcttgctccttctatgatattgtgcattgtgaggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="1277" stop="125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="977" g_stop="426" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E607197" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="977" e_stop="426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAATTAGAGGCAAGGTTGTTCCCTCATCATAAATTGCTACGAGACAGGACATCTCTGAAGACACTAATGGGCTGTACCAAAAATGAGGAACTTGGATCTGCTGAATCAACTATTGAAGTGAAGCCCGAGAAGAATTATGTTAGTCCTATTGATGAGAATCCTATTGCTGTGGAGTTCTTGGCTTCTCTTAGTAAGGAGCAGTCTAAAGTTACTACTAGGTGTGAGGATGCTTGTTTACAGATTTCCAATGTTCAAGATGTGGATGATGCAGTAAGTTCACAAAACCAAAATTCTTCTTCAGAACTGTTCAAAGGAAAAGAAATTGTTGATCATCTCCTGGCAAGTGATGAGAGGCTTGAAAGTTTTGATGCTCAAGAGAATAAACAAGAAATGTTGATGGAGGAAGAGACAGAAGATAGTTCTATATGTGAACTCAATGAGATTGGCCGTAAGACATCTACTGGAGGGTGGTTTGTCTCTGAGGGAGAATCTGTTCTCCTTACACATGATGACAGTTCCTGCTCTTTCTATGATATTGTGCATTGCGAG</genome_strand>
        <mrna_strand>GAGGAATTAGAGGCGAGGTTGTTCCCTCATCATAAATTGCTAAGAGACAGGACATCTCTGAAGACACTAATGGGCTGTACCAAAAATGAGGAACTTGAATCTGCTGAATCAACTATTGAAGTGAAGCCTGAGAAGAATTATGTTAGTCCTATTGATGAGAATCCTATAGCTGTGGAGTTCTTGGCTTCTCTTAGTAAGGAGCAGTCTAAAGTTACTACTAGGTGTGAGGATGCGTGTTTACAGATTTCCAATGTTCAAGATGTGGATGATGCAGTAAGTTCACAAAACCAAATTTCTTCTTCGAAACTGTTCAAAGGAAAAGAAATTGTTGATCATCTCCTGGCAAGTGATGAGAGGCTTGAAAGTTTTGATGCTCAAGAGAATAAACAAGAAATGTTGATGGAGGAAGAGACAGAAGATAGTTCTATATGTGAGCTCAATGAGATTGGCCGTAAGACATCTACTGGAGGGTGGTTTGTCTCTGAGGGAGAATCTGTTCTCCTTACACATGATGACAGTTCTTGCTCCTTCTATGATATTGTGCATTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472150" ref_strand="+" ref_description="SGN-E472150 [cSTB-27-P7]">
      <seq>cccaagtaagctgcacgagaagcttgccttcttggaagggaaagtgaagaggattgcaactgatattaagaggactaaggagatgttggatatgaataatcctgattcttcaaagttgataatttcagatatccaagagaagatatccgggattgagaaggcgatgggtaatgtagttgatggtgatggaaaaataggtttggcaagtagcagtaaaaatgagagtttgaatgctgatgagaagatatgtgggattgagaaggcgatgagtaatattgtggatggggatagagaaattggtttgctgagtagcattagaagtgaggacatgaatattgatgagaaggaaacaaaacctgaggataatgggaaaatctctgtgaagggattaaatgtagaggaattagaggcgaggttgttccctcatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="1674" stop="644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1374" g_stop="944" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E472150" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1374" e_stop="944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGTAAGCTGCATGAGAAGCTTGCGTTCTTGGAAGGAAAAGTGAAGAGGATTGCAACTGATATTAAGAGGACTAAGGAGATGTTGGATATGAATAATCCTGATTCTTCTAAGTTGATAATTTCTGATATCCAAGAGAAGATATCCGGGATTGAGAAGGCAATGGGTAATGTAGTTGATGGGGATGAAAAAATAGGTTTGACGAGTAGCAGTAAAAATGAGAGTTTGAATGTTGATGAGAAGATATGTGGGATTGAGAAGGGGATGTGTAATATAGTGGATGGGGATAGAGAAATTGGTTTGCTGGGTAGCATTAGCAGTGAGGACATGATTATTGATGAGAAGGAAACAATACCTGAGGATAATGGGAAAATCTCTGTGAAGGGATTAAATGTAGAGGAATTAGAGGCAAGGTTGTTCCCTCATCATA</genome_strand>
        <mrna_strand>CCCAAGTAAGCTGCACGAGAAGCTTGCCTTCTTGGAAGGGAAAGTGAAGAGGATTGCAACTGATATTAAGAGGACTAAGGAGATGTTGGATATGAATAATCCTGATTCTTCAAAGTTGATAATTTCAGATATCCAAGAGAAGATATCCGGGATTGAGAAGGCGATGGGTAATGTAGTTGATGGTGATGGAAAAATAGGTTTGGCAAGTAGCAGTAAAAATGAGAGTTTGAATGCTGATGAGAAGATATGTGGGATTGAGAAGGCGATGAGTAATATTGTGGATGGGGATAGAGAAATTGGTTTGCTGAGTAGCATTAGAAGTGAGGACATGAATATTGATGAGAAGGAAACAAAACCTGAGGATAATGGGAAAATCTCTGTGAAGGGATTAAATGTAGAGGAATTAGAGGCGAGGTTGTTCCCTCATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352422" ref_strand="+" ref_description="SGN-E352422 [cTOS-9-F10]">
      <seq>agctttagcttctttactactcatgtaccacaagatagtgaattttccataagacaatgaccaacagtcaagataaaaaaccaaacatacacccatcaatgacaacatataggtaagcaacaacattcagataaattcaagaaaataacaaaaggggatcaaaaagattagatttttaagtaccaataacttgagtttgagagacccaataagctccgcttcagcttctttactaccaggtggctcaataaaagtgacttcatcaatacccgactggcaaactaaacttctcttgctgtcatagctcctttcctctaataatctttgagtacttctcttgcttcttcctgggagatgacatgggaaagattggcaagaatttgataaagaatgattgtgagaaaggggaagtctcgaatgaagtagagaagccatggttgagcttgaatttcagaaaaaaggatcgatcttttgtggagtttgattggtggtgtagttgtagtaacaaatctacatttttctagttttgtgttgaataaaaaagctaagggacccatttccttctttcccttttcttttattcggtgtctcgtattcatatttaaaacgattaaatttaaaaatttcatattaaaaattataaaacctctataacaaagatattcgaatttgaatctctaaatgaaataaaatactattatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="3922" stop="2618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3622" g_stop="2918" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E352422" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3622" e_stop="2918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTAGCTTCTTTACTACTCATGTACCACAAGATAGTGAATTTTCCATAAGACAATGACCAACAGTCAAGATAAAAAACCAAACATACACCCATCAATGACAACATATAGGTAAGCAACAACATTCAGATAAATTCAAGAAAATAACAAAAGGGGATCAAAAAGATTAGATTTTTAAGTACCAATAACTTGAGTTTGAGAGACCCAATAAGCTCCGCTTCAGCTTCTTTACTACCAGGTGGCTCAATAAAAGTGACTTCATCAATACCCGACTGGCAAACTAAACTTCTCTTGCTGTCATAGCTCCTTTCCTCTAATAATCTTTGAGTACTTCTCTTGCTTCTTCCTGGGAGATGACATGGGAAAGATTGGCAAGAATTTGATAAAGAATGATTGTGAGAAAGGGGAAGTCTCGAATGAAGTAGAGAAGCCATGGTTGAGCTTGAATTTCAGAAAAAAGGATCGATCTTTTGTGGAGTTTGATTGGTGGTGTAGTTGTAGTAACAAATCTACATTTTTCTAGTTTTGTGTTGAATAAAAAAGCTAAGGGACCCATTTCCTTCTTTCCCTTTTCTTTTATTCGGTGTCTCGTATTCATATTTAAAACGATTAAATTTAAAAATTTCATATTAAAAATTATAAAACCTCTATAACAAAGATATTCGAATTGAAATCTCTAATGAAAAATAAAATACTATTATATA</genome_strand>
        <mrna_strand>AGCTTTAGCTTCTTTACTACTCATGTACCACAAGATAGTGAATTTTCCATAAGACAATGACCAACAGTCAAGATAAAAAACCAAACATACACCCATCAATGACAACATATAGGTAAGCAACAACATTCAGATAAATTCAAGAAAATAACAAAAGGGGATCAAAAAGATTAGATTTTTAAGTACCAATAACTTGAGTTTGAGAGACCCAATAAGCTCCGCTTCAGCTTCTTTACTACCAGGTGGCTCAATAAAAGTGACTTCATCAATACCCGACTGGCAAACTAAACTTCTCTTGCTGTCATAGCTCCTTTCCTCTAATAATCTTTGAGTACTTCTCTTGCTTCTTCCTGGGAGATGACATGGGAAAGATTGGCAAGAATTTGATAAAGAATGATTGTGAGAAAGGGGAAGTCTCGAATGAAGTAGAGAAGCCATGGTTGAGCTTGAATTTCAGAAAAAAGGATCGATCTTTTGTGGAGTTTGATTGGTGGTGTAGTTGTAGTAACAAATCTACATTTTTCTAGTTTTGTGTTGAATAAAAAAGCTAAGGGACCCATTTCCTTCTTTCCCTTTTCTTTTATTCGGTGTCTCGTATTCATATTTAAAACGATTAAATTTAAAAATTTCATATTAAAAATTATAAAACCTCTATAACAAAGATATTCGAATTTGAATCTCTAA-ATGAAATAAAATACTATTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624224" ref_strand="+" ref_description="SGN-E624224 [GI|38679328]">
      <seq>ctaccaccaatcaaactccacaaaagatcgatcctttttctgaaattcaagctcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattctttgaggaaaggagctatgatagcaagagagccttaatttgtcagtcgggtattgatgaagtcacttttaggctacctggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctggaatcttgtgcaggagctgtagatctcgcagctgatcttgataagcttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggcccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaattgatgtactaagcaaggattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccacctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacaattaagattgtattcgaaaaaactacagtgaagacaactggaaatttatcacagttgccaccaatagaagtgcctcgaataccagatcagttcaggccaccatcaaatacaggaaatggtgagtttgaagttacctatatcgattctgatacacgtgtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgcaataaatatagttttcctacaatattttgttgctacaatttcatgtaacaacatatcnaatgtatagatatgctcaacattattctgctggtcaaagctagcaaatttgtaatgctactgcaaattcaaatctgtatacagtaaatttgacatgtgatggagttatgcagtgagatttcnanaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2831" stop="8019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3129" g_stop="3439" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="544" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="671" r_length="127" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.772" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7719" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="1081" r_length="410" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E624224" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>1085</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E624224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3129" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATCTGATGGACTTGTGCAGTGAGATTTCAAAAAT</genome_strand>
        <mrna_strand>CTACCACCAATCAAACTCCACAAAAGATCGATCC-TTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTCTTTGAGGAAAGGAGCTATGATAGCAAGAGAGCCTTAATTTGTCAGTCGGGTATTGATGAAGTCACTTTTA--G-GCTACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTGGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAGCTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGCCCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCACCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACAATTAAGATTGTATTCGAAAAAACTACAGTGAAGACAACTGGAAATTTATCACAGTTGCCACCAATAGAAGTGCCTCGAATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAATGGTGAGTTTGAAGTTACCTATATCGATTCTGATACACGTGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATAAATATAGTTTTCCTACAATATTTTGTTGCTACAATTTCATGTAACAACATATCNAATGTATAGATATGCTCAACATTATTCTGCTGGTCAAAGCTAGCAAATTTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATGTGATGGAGTTATGCAGTGAGATTTCNANAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619656" ref_strand="+" ref_description="SGN-E619656 [70349]">
      <seq>ttaccaccaatcaaactccacagaagatcgatcctttttctgaaattcaagctcaaccatggcttcactacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagccacttttattgagccacctggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggccttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcctgcgcaggagctgtagatctcgcagctgatcttgatatgcttcaaggaaggtggaaattgatatacagcagtgcattctcatctcgtactctaggtggaagtcgtcctgggccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaattgatgtactaagcaaggattttgacaacatagtggagcttgaactaggtgctccgtggcctttcccacctngtgaagcgactgccactttagcccacaaatttgaacttataggatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2831" stop="7493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3129" g_stop="3439" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="547" r_length="237" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="674" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.92"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7316" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="681" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E619656" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3129" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATC</genome_strand>
        <mrna_strand>TTACCACCAATCAAACTCCACAGAAGATCGATCC-TTTTTCTGAAATTCAAGCTCAACCATGGCTTCACTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGCCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGCCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCCTGCGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATATGCTTCAAGGAAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTAGGTGGAAGTCGTCCTGGGCCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAACTAGGTGCTCCGTGGCCTTTCCCACCTNGTGAAGCGACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690808" ref_strand="+" ref_description="SGN-E690808 [LH_Ea04H14]">
      <seq>cctttaagaactccacaaaagatcgatcctttttttctgactttcaaactcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccgtgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaagggagctatgacagcaagagaagtttagtttgccagtcgagtattgatgaagtcacttttattgagccacctggtagtaaagaagctaaagctgagcttattggatctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatttaaagaaggcggatgaggctgccaaggagctagaatcttgcgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaatatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctgccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2835" stop="7730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3135" g_stop="3439" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="544" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="671" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7430" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="792" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E690808" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3135" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCA-AACTCCACAAAAGATCGATCCTTTTTT-CTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATAC</genome_strand>
        <mrna_strand>CCTTTAAGAACTCCACAAAAGATCGATCCTTTTTTTCTGACTTTCAAACTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCGTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAGGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGAGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGATCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATTTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGCGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAATATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTGCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731400" ref_strand="+" ref_description="SGN-E731400 [LA27AA08]">
      <seq>catatatcgatccttttttctgaaattcaagctcaaccatggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2851" stop="7787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3150" g_stop="3439" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="527" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="654" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7487" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="832" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E731400" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3150" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGG</genome_strand>
        <mrna_strand>CATATATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460496" ref_strand="+" ref_description="SGN-E460496 [cPRO-31-O22]">
      <seq>gatcgatcctttttctgaaattcaagctcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattctttgaggaaaggagctatgatagcaagagagccttaatttgtcagtcgggtattgatgaagtcacttttaggctacctggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataagcttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggcccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaattgatgtactaagcaaggattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccacctgttgaagcgactggcactttagcccacaaattttgacttataggatcatctacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2854" stop="7499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3154" g_stop="3439" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="519" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="646" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7321" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="658" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E460496" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3154" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGA</genome_strand>
        <mrna_strand>GATCGATCC-TTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTCTTTGAGGAAAGGAGCTATGATAGCAAGAGAGCCTTAATTTGTCAGTCGGGTATTGATGAAGTCACTTTTA--G-GCTACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAGCTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGCCCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCACCTGTTGAAGCGACTGGCACTTTAGCCCACAAATTTTGACTTATAG.......................................................................................................................GATCATCTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412926" ref_strand="+" ref_description="SGN-E412926 [STM-17-E9]">
      <seq>gatcgatcctttttctgaaattcaagctcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattctttgaggaaaggagctatgatagcaagagagccttaatttgtcagtcgggtattgatgaagtcacttttaggctacctggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataagcttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggcccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaattgatgtactaagcaaggattttgacaacatagtggagcttgaattangtgctccgtggcctttcccacctgttgaagcgactgccactttagcccacaaatttgaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2854" stop="7487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3154" g_stop="3439" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="519" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7187" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="643" r_length="124" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E412926" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3154" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTA</genome_strand>
        <mrna_strand>GATCGATCC-TTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTCTTTGAGGAAAGGAGCTATGATAGCAAGAGAGCCTTAATTTGTCAGTCGGGTATTGATGAAGTCACTTTTA--G-GCTACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAGCTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGCCCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAATTANGTGCTCCGTGGCCTTTCCCACCTGTTGAAGCGACTGCCACTTTAGCCCACAAATTTGAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471398" ref_strand="+" ref_description="SGN-E471398 [cSTB-23-L2]">
      <seq>gatcgatcctttttctgaaattcaagctcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattctttgaggaaaggagctatgatagcaagagagccttaatttgtcagtcgggtattgatgaagtcacttttaggctacctggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataagcttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2854" stop="6702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3154" g_stop="3439" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6402" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="415" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E471398" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3154" e_stop="3439"/>
          <exon e_start="6270" e_stop="6402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAG</genome_strand>
        <mrna_strand>GATCGATCC-TTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTCTTTGAGGAAAGGAGCTATGATAGCAAGAGAGCCTTAATTTGTCAGTCGGGTATTGATGAAGTCACTTTTA--G-GCTACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAGCTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747470" ref_strand="+" ref_description="SGN-E747470 [GI|38679318]">
      <seq>tcgatcctttttctgaaattcaagctcaaccatggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgcaatgaatatagtcttcctacaatgttttgttgctacaatttcatgtaacaacatatcaaatgtgtagatatgctcaacattattctgctggtcacagctatcaaatctgtaatgctactgcaaattcaaatctgtatacagtaaatttgacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2856" stop="7988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3156" g_stop="3439" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="520" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="647" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7688" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="1026" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E747470" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1027</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3156" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATC</genome_strand>
        <mrna_strand>TCGATCC-TTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401800" ref_strand="+" ref_description="SGN-E401800 [PPC-5-I8]">
      <seq>gaaattcaagctcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattctttgaggaaaggagctatgatagcaagagagccttaatttgtcagtcgggtattgatgaagcacttttaggctacctgggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2871" stop="6663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3171" g_stop="3439" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6363" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="360" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E401800" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3171" e_stop="3439"/>
          <exon e_start="6270" e_stop="6363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCT-GGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAG</genome_strand>
        <mrna_strand>GAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTCTTTGAGGAAAGGAGCTATGATAGCAAGAGAGCCTTAATTTGTCAGTCGGGTATTGATGAAG-CACTTTTA--G-GCTACCTGGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706561" ref_strand="+" ref_description="SGN-E706561 [FA30BC03]">
      <seq>attcaagctcaaccatggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagagttttcgttatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2874" stop="7822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3174" g_stop="3439" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="503" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="630" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7522" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="843" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E706561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3174" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCAT</genome_strand>
        <mrna_strand>ATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706379" ref_strand="+" ref_description="SGN-E706379 [FA29DB12]">
      <seq>agctcaaccatggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattccagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggcccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2879" stop="7769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3179" g_stop="3439" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="498" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="625" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7469" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="786" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E706379" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3179" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGG-CCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGA</genome_strand>
        <mrna_strand>AGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCCAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708794" ref_strand="+" ref_description="SGN-E708794 [FA36DB07]">
      <seq>ccttaaccatggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgcaatgaatatagtcttcctacaatgttttgttgctacattttcatgtaacaacatatcaaatgtgtagatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2881" stop="7909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3180" g_stop="3439" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="497" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="624" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7609" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="924" r_length="300" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E708794" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3180" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTC</genome_strand>
        <mrna_strand>CCTTAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACATTTTCATGTAACAACATATCAAATGTGTAGATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465976" ref_strand="+" ref_description="SGN-E465976 [cPRO-22-H2]">
      <seq>ctcaaccatggcttctctacttcattctagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccctgtcatctcccaggaagaagcaagagaagtactcaaagattctttgaggaaaggagctatgatagcaagagagccttaatttgtcagtcgggtattgatgaagtcacttttaggctacctggtagtaaagaagctaaagctgagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctggaatcttgtgcaggagctgtagatctcgcagctgatcttgataagcttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggcccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaattgatgtactaagcaaggattttgacaacatagtggagcttgaattaggtgctccgtgggcctttccacctgntgaagcaactgccactttagcccacaaatttgaacttataggatcatctacaattaagattgtattcgagaaaactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2881" stop="7647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3181" g_stop="3439" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="493" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="620" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.772" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7347" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="658" r_length="38" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E465976" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3181" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACA</genome_strand>
        <mrna_strand>CTCAACCATGGCTTCTCTACTTCATTCTAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCCTGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTCTTTGAGGAAAGGAGCTATGATAGCAAGAGAGCCTTAATTTGTCAGTCGGGTATTGATGAAGTCACTTTTA--G-GCTACCTGGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTGGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAGCTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGCCCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGGCCTTTCCACCTGNTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACAATTAAGATTGTATTCGAGAAAACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730184" ref_strand="+" ref_description="SGN-E730184 [LA23BC12]">
      <seq>ggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagaagtttcgttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2890" stop="7819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3190" g_stop="3439" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="487" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="614" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7519" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="824" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E730184" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3190" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCT</genome_strand>
        <mrna_strand>GGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAAGTTTCGTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728983" ref_strand="+" ref_description="SGN-E728983 [LA19CD07]">
      <seq>cttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcaattcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2900" stop="7717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3200" g_stop="3439" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="477" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="604" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7417" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="712" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E728983" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3200" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGC</genome_strand>
        <mrna_strand>CTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAATTCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288728" ref_strand="+" ref_description="SGN-E288728 [cLES-8-B16]">
      <seq>aaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2941" stop="6750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3241" g_stop="3439" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="380" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E288728" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3241" e_stop="3439"/>
          <exon e_start="6270" e_stop="6450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTG</genome_strand>
        <mrna_strand>AAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459705" ref_strand="+" ref_description="SGN-E459705 [cPRO-28-N17]">
      <seq>atacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggcccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaattgatgtactaagcaaggattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccacctgttgaagcgactgccactttagcccacaaatttgaacttataggatcatctacgattaagattgtattcgagaaaactacagtgaagacaaccggaaatttatcacagctgccaccaatagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctatatcgattctgatacacgtgtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgcaataaatatagttttcctacaatattttgttgctacaatttcatgtaacaacatatcaaatgtatagatatgctcaacattattctgctggtcaaagctagcaaatttgtaatgctactgcaaattcaaatctgtatacagtaaatttgacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="6119" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6419" g_stop="6506" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="215" r_length="127" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.772" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7310" g_stop="7694" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="600" r_length="385" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E459705" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6419" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATCTGATGG</genome_strand>
        <mrna_strand>ATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGCCCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCACCTGTTGAAGCGACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTGTATTCGAGAAAACTACAGTGAAGACAACCGGAAATTTATCACAGCTGCCACCAATAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTATATCGATTCTGATACACGTGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATAAATATAGTTTTCCTACAATATTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTATAGATATGCTCAACATTATTCTGCTGGTCAAAGCTAGCAAATTTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412927" ref_strand="-" ref_description="SGN-E412927 [STM-17-E9]">
      <seq>aagaattgatgtactaagcaaggattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccacctgttgaagcgactgccactttagcccacaaatttgaacttataggatcatctacgattaagattgtattcgagaaaactacagtgaagacaaccggaaatttatcacagctgccaccaatagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtggagtttgaagttacctatatcgattctgatacacgtgtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgcaataaatatagttttcctacaatattttgttgctacaatttcatgtaacaacatatcaaatgtatagatatgctcaacattattctgctggtcaaagctagcaaatttgtaatgctactgcaaattcaaataagtatacagtaaattgacaaaaaaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="6772" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7072" g_stop="7190" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.772" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7310" g_stop="7695" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="504" r_length="385" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E412927" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412927" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7072" e_stop="7190"/>
          <exon e_start="7310" e_stop="7695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGT-GAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATCTGATGGA</genome_strand>
        <mrna_strand>AAGAATTGATGTACTAAGCAAGGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCACCTGTTGAAGCGACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTGTATTCGAGAAAACTACAGTGAAGACAACCGGAAATTTATCACAGCTGCCACCAATAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGGAGTTTGAAGTTACCTATATCGATTCTGATACACGTGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATAAATATAGTTTTCCTACAATATTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTATAGATATGCTCAACATTATTCTGCTGGTCAAAGCTAGCAAATTTGTAATGCTACTGCAAATTCAAATAAGTATACAGTAAA-TTGACA-AAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689832" ref_strand="+" ref_description="SGN-E689832 [LH_Ea01O22]">
      <seq>ccatttgccactttagcccacaaatttgaacttataggatcctctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctgccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgaaatgaatatagtcttcctacaatgttttgttgctacaatttcatgtaacaacatatcaaatgtgtagatatgctcaacattattctgctggtcacaaactagcgaatttgtaatgctactgcaaattcaaatctgtatacagtaaatttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="6855" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7154" g_stop="7190" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7310" g_stop="7695" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="424" r_length="387" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E689832" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7154" e_stop="7190"/>
          <exon e_start="7310" e_stop="7695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCAC-AGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATCTGATGGA</genome_strand>
        <mrna_strand>CCATTTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCCTCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTGCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGAAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAAACTAGCGAATTTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693672" ref_strand="+" ref_description="SGN-E693672 [LH_Ea01O22](-)">
      <seq>ctgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctgccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggcgagcttagagttttcgttatctcataagttaagctgaaatgaatatagtcttcctacaatgttttgttgctacaatttcatgtaacaacatatcaaatgtgtagatatgctcaacattattctgctggtcacaaactagcaaatttgtaatgctaaaggaaattcaaatctgtatacagtaaattgacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="6858" stop="111343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7158" g_stop="7190" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7310" g_stop="7684" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="408" r_length="375" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7685" i_stop="9229" i_length="1545">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.685" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9230" g_stop="9247" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="426" r_length="18" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E693672" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7158" e_stop="7190"/>
          <exon e_start="7310" e_stop="7684"/>
          <exon e_start="9230" e_stop="9247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCAC-AGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATCTGATGGACTTGTGCAGTGAGATTTCAAAAATACATGAGGTAAGTTAAGGTCTACGTACACGTGGGATTACATTGGGTATTGTTGTTATATCACTTATATGAGGTAAGGAACAACAAAGAAAATCCTTATATTCAAAGTCACCGTTTTCTCTATTTATTATTATGACAAATTAGTATATCGTGATGTCAACTTGAGATCTTATTTTAGTTCGATATGTCTATTAATGAGACGCGTACAATGTCAACCAATAAAGAGTCACACTATGTATACATAGTTCGAGTCGAAAGCAGTAACAAAGTAAATGCTACTCCCCACAACTAAAGAACTCCCAAGACTCGAACTCTCTTTGATTTGATGGTATTGCAATTTGCAAGAAGCATGAACACAAGTATCTTGGCTCTACTACTTGAAAAGCAGAGCTTGGTAACATAAATCTTTTGATCTAACATAAATCTTTTGATCTACACGATAATCTCAAATTAATTGTATTTATTTAGATTTATATAGTCCAATAATGACAGGATTTATCCTAGTTAAATAAGTTTAGGCAAATAAGATTAGAGGGTGTTTGGCTAATCTAGTCAAATTAGTTTATTAACACTTTTTAAACTTATCAACATAACTAGTAGTACTTGACTCAAAATCTTTAAGTTAGTCAACACCAATTTATGGCTTTTCACTTATAGCACTCAAAATTACTTTTTAGAACTTATATATTCTTATCAATTAACTTTCCATAAGCTACTCTCTCTGTCCTAAGTCCTAATTTATGTGATTCGCTTTTCTTTTTAGTAAATTCAAAAAAAATGATATATTTCTATATTAAGTAACAATTTTTAATTATAAAATTTCTATTTTATCTTTAACGAAATGATTTACAGCCACACAATTTTCTATCATTCATTTTGGATCACAAGTTTTAAAAATATTTCTTTCTTAAATTATGTGCATAATCAAAATACCTCACAGAAAATTAGACGGACTGAGTATTTCAAAACAACTAGATGAAATTGTCCCTATATAAAAGTCGATCAATAGTCAACTTTCATTTCTTGATCCGTCTGATCATTTGATCTTCTCAATTTAACTCGCCTTTGAATTATCATTCATGTTAGATAAACCAACAAAAAATTCGATTTTTTGCTAAAACTATAAGATTTTTATTTTTTTACTTGTAACTAAGTGAAAACGACAAAAGTGCAATAATTAACATAAAAATTTAGATACAGAATCTTTTAGCTCTTTTAAGTTTTAAATGTTTATTTAATATTAGACTCTTCAAATGTTTATTTATTACTTATTTTCAAATATTTATTTATCAAGGTGAAAATGCAAAAGGTTAAAATGGTAAAAAAAGACGAAGATGGTTTCAAAACAAAAAATTGAAACTAGCCGTTACCAATTTAAACGTTTAAACTTTTCATTTTTTTGAACTTTCAAAAACAAAAACATCCAAAAATACAGTCCATTTTTTTTTTTTTTTCATTTCACTCTCAATTCTGAAGAACCCATTTCTGTCTTCTCCAATTTTCCATTTTTAGCTGAAAAAAAAGAATCAA</genome_strand>
        <mrna_strand>CTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTGCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGCGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGAAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAAACTAGCAAATTTGTAATGCTAAAGGAAATTCAAATCTGTATACAGTAAA-TTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220242" ref_strand="+" ref_description="SGN-E220242 [cLEL-12-B14](-)">
      <seq>ccactttagcccacaaatttgaacttataggatcatctacgattaagataatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgcaatgaatatagtcttcctacaatgttttgttgctacaatttcatgtaacaacatatcaaatgtgtagatatgctcaacattattctgctggtcacagctatcaaatctgtaatgctactgcaaattccaatctgtatacagtaaatttgccaaaaatataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="6861" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7161" g_stop="7190" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7310" g_stop="7685" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="406" r_length="376" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="426"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E220242" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7161" e_stop="7190"/>
          <exon e_start="7310" e_stop="7685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGAC</genome_strand>
        <mrna_strand>CCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATAATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCCAATCTGTATACAGTAAATTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200023" ref_strand="+" ref_description="SGN-E200023 [cLEB-9-M7]">
      <seq>gcacgagtgaaggagatacagagaatccccccgtcgatgaggaggtgcagaaggaggtcattgaggaaaaaacaatatattctgatctgcttgatcaagatatgagttgtttgagaacagatcctgatcatttcattgatttattgaaggacagtgatgtttgtatgggtgcagccccttctaggcaagcgcttattcaaaacattttcacactctgtggcaattatagagagctttctcagcatagtgtaagcccagtgcctgcacagaagaatttggaagatattgattcttcagtacccacagttaagacaattggagaggattatgcatctgcgtgtgctgcagaaggtttgtccaatgaacttttgccattatgcaatcccgagaccataaaaaagtcaccagttaatcagacaagaatgttcaagagctcttgtgacaaagaaaatgattcaaaggagaacttcaaccctacttgtggcaatcttgaagtccacgtgaaatgggaagctgcatcaaaagagaatcctagtgtagcaaccacagtaaaggttggcaaagattcatccttagctgatctgcgcaaacagattgagctacacctcggtgcagacaatccattcactttccttacaataggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="12099" stop="13346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12400" g_stop="13042" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E200023" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12400" e_stop="13042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGA-TGAAGGAGATACAGAGAATCCCCCCGTCGATGAGGAGGTGCAGAAGGAGGTCATTGAGGAAAAAACAATATATTCTGATCTGCTTGATCAAGATATGAGTTGTTTGAGAACAGATCCTGATCATTTCATTGATTTATTGAAGGACAGTGATGTTTGTATGGGTGCAGCCCCTTCTAGGCAAGCGCTTATTCAAAACATTTTCACACTCTGTGGCAATTATAGAGAGCTTTCTCAGCATAGTGTAAGCCCAGTGCCTGCACAGAAGAATTTGGAAGATATTGATTCTTCAGTACCCACAGTTAAGACAATTGGAGAGGATTATGCATCTGCGTGTGCTGCAGAAGGTTTGTCCAATGAACTTTTGCCATTATGCAATCCCGAGACCATAAAAAAGTCACCAGTTAATCAGACAAGAATGTTCAAGAGCTCTTGTGACAAAGAAAATGATTCAAAGGAGAACTTCAACCCTACTTGTGGCAATCTTGAAGTCCACGTGAAATGGGAAGCTGCATCAAAAGAGAATCCTAGTGTAGCAACCACAGTAAAGGTTGGCAAAGATTCATCCTTAGCTGATCTGCGCAAACAGATTGAGCTACACCTCGGTGCAGACAATCCATTCACTTTCCTTACAATAGGG</genome_strand>
        <mrna_strand>GCACGAGTGAAGGAGATACAGAGAATCCCCCCGTCGATGAGGAGGTGCAGAAGGAGGTCATTGAGGAAAAAACAATATATTCTGATCTGCTTGATCAAGATATGAGTTGTTTGAGAACAGATCCTGATCATTTCATTGATTTATTGAAGGACAGTGATGTTTGTATGGGTGCAGCCCCTTCTAGGCAAGCGCTTATTCAAAACATTTTCACACTCTGTGGCAATTATAGAGAGCTTTCTCAGCATAGTGTAAGCCCAGTGCCTGCACAGAAGAATTTGGAAGATATTGATTCTTCAGTACCCACAGTTAAGACAATTGGAGAGGATTATGCATCTGCGTGTGCTGCAGAAGGTTTGTCCAATGAACTTTTGCCATTATGCAATCCCGAGACCATAAAAAAGTCACCAGTTAATCAGACAAGAATGTTCAAGAGCTCTTGTGACAAAGAAAATGATTCAAAGGAGAACTTCAACCCTACTTGTGGCAATCTTGAAGTCCACGTGAAATGGGAAGCTGCATCAAAAGAGAATCCTAGTGTAGCAACCACAGTAAAGGTTGGCAAAGATTCATCCTTAGCTGATCTGCGCAAACAGATTGAGCTACACCTCGGTGCAGACAATCCATTCACTTTCCTTACAATAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260596" ref_strand="+" ref_description="SGN-E260596 [cLEG-54-J18]">
      <seq>cattaacttccacttctgatcttaaggattctgataatgttgtatctgctcatagtcatgatagtggaagtatgaataatcttaagagtacaattcgttcagaaaagacgtctataactaatatggaagaaaatgttgacagtaaaacatctctgtcttcttttatagccgttgagattgttaatatgaaaaacacttcaaatacagttgagactgaggaatcgcgaaatatctcgtcaaaagaatgtgaaggaagcactgactacggggtaaatgacatgtcttccggtgcatcatctatctgcaggaaagccgattccaacgacggtgttcaactgattaatgatttccatcattcagagttcgttaagaaagagagagaacaattgctagctgaggaagcatcatcaagtttacaaatcagttctggcgaagagatcctgtcaaaatctgaggacgcacgtatcgtagaacatcggatgcaaattgagatacctaggacatcacatagaatttctgcaaataaatctggttcaactgcatctgaaagccaggaggacattatgaagaagttcaaattttcgtcgaatcagattgttgccccaaagagcgaaaaatctgtacctagagagtttgagcaccttcatgaaacttctcagaatactttcggcaagagtggcgacataaagggcttaatagaatgtattagggtgctccctcctcagaatcattctgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="25084" stop="23746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24784" g_stop="24046" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E260596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24784" e_stop="24046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTAAGAAAGAGAGAGAACAATTGCTAGCTGAGGAAGCATCATCAAGTTTACAAATCAGTTCTGGCGAAGAGATCCTGTCAAAATCTGAGGACGCACGTATCGTAGAACATCGGATGCAAATTGAGATACCTAGGACATCACATAGAATTTCTGCAAATAAATCTGGTTCAACTGCATCTGAAAGCCAGGAGGACATTATGAAGAAGTTCAAATTTTCGTCGAATCAGATTGTTGCCCCAAAGAGCGAAAAATCTGTACCTAGAGAGTTTGAGCACCTTCATGAAACTTCTCAGAATACTTTCGGCAAGAGTGGCGACATAAAGGGCTTAATAGAATGTATTAGGGTGCTCCCTCCTCAGAATCATTCTGTTGT</genome_strand>
        <mrna_strand>CATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTAAGAAAGAGAGAGAACAATTGCTAGCTGAGGAAGCATCATCAAGTTTACAAATCAGTTCTGGCGAAGAGATCCTGTCAAAATCTGAGGACGCACGTATCGTAGAACATCGGATGCAAATTGAGATACCTAGGACATCACATAGAATTTCTGCAAATAAATCTGGTTCAACTGCATCTGAAAGCCAGGAGGACATTATGAAGAAGTTCAAATTTTCGTCGAATCAGATTGTTGCCCCAAAGAGCGAAAAATCTGTACCTAGAGAGTTTGAGCACCTTCATGAAACTTCTCAGAATACTTTCGGCAAGAGTGGCGACATAAAGGGCTTAATAGAATGTATTAGGGTGCTCCCTCCTCAGAATCATTCTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327578" ref_strand="+" ref_description="SGN-E327578 [cTOC-20-I14]">
      <seq>aataatgtccctctctcgtcttctttcaatcaaattgcgaccgttaatcaacacagtagaatgtagaagatggtgttcttcagtgaatggtaagggtgaaatttcacagccgttgaagaaatcagaagtgatggtgcaactgaaagacagagatgtggagatagctgaaaagaagcatatgactgaaaatgaagaggtctttcctagagaaacacgtgtccagaaggaagtagattcgtggaatagtttggtagcgacctttcaaataactaaaaagaagatatttagaaatattttggagcagaagagcagtagcactcattcattaacttccacttctgatcttaaggattctgataatgttgtatctgctcatagtcatgatagtggaagtatgaataatcttaagagtacaattcgttcagaaaagacgtctataactaatatggaagaaaatgttgacagtaaaacatctctgtcttcttttatagccgttgagattgttaatatgaaaaacacttcaaatacagttgagactgaggaatcgcgaaatatctcgtcaaaagaatgtgaaggaagcactgactacggggtaaatgacatgtcttccggtgcatcatctatctgcaggaaagccgattccaacgacggtgtttcactgatttatgatttccatcattcagagttcgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="26638" stop="24116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26336" g_stop="26222" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="174" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26221" i_stop="24934" i_length="1288">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24933" g_stop="24416" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="692" r_length="518" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E327578" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26336" e_stop="26222"/>
          <exon e_start="24933" e_stop="24416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTAGAAGATGGTGTTCTTCAGTGAATGGTAAGGGTGAAATTTCACAGCCGTTGAAGAAATCAGAAGTGATGGTGCAACTGAAAGACAGAGATGTGGAGATAGCTGAAAAGAAGTAAGATCTCTTGATTAGAAAGAGTATGCGCCTTTAGCTACATTTTGAGCTTAACTATTTGGTTGAAATTTGATGTTAATATAATTAAGGTCCTTAAAATTATTAGTTGCTTACTAAGTATGCATTCCACAAGATGATTATCAACGAATAAGATGTTTTCTGATAGCATACAAATAAGATTTTTCGATGGACATGTACTTGTAAAAAATTAGAAATAATCACACTCGAGGCAGACGGTACAAGTAGAACATAGAGATAATAAATGAGAATGAGATGGCTTGACTATGTCCTACATTGACCGCTGAATGCACCAGTACTTCAGTGCAACATTATGGCGTTATAAAAAAGAACAAGTTATACCTAAAGTCACATGGAGGGTAGTTGTCTCAATGATATGCCATCTCTTTGAATCTATGCGAATTTAACTAAGAAGAGAATTCATATAGGCAATGAGGTTCAATAGTGTTAGCGCACTTACATAAGGTGTGGTGTCAGTTAGATATTTGTACATGAAGTGTAGAACTATCGGTTAATTGAGTATTTGGTTTGATTTAGACTTTTATTTGTGCAAAGTGTATACTTGCATTACGACATATATGTTGTGATATACATTTATTAACCATATCCTAGCACCCGTACTTCAGTTCGTAGCCCCGAATCCTAAAATTTATTTGATGATGAATTCGACCTGTAGATCTACACCCATATCGGATGTCGGCACCCATATCCGAGCAACATAGGTTGTAAATGATGTCTCATCGTCAAAAGGTCAGGGCGATCTTCCTTTGGGAATACATGCCTACGTAGTAGCTGAGGTTGTTTAACTGTCATAACTGCACAGTGGAGATCATCACGATGAAATATGTTCCAGTTTAACTGTCAACATGAATGTTAGGTATCTAAAAGTAGAGAGTGCAATTTTCTAAAACTAAGTTAGAAGGTGAATTGGGATTTTGTAGCATGCTTCGAGATGTGAAATGGATATCATACTAGTGATGGACTAATTTCATGCAGATCAATTGCTTTTTTATTTCTTTGGATTACACTAGTCTATGCAGTAGAGTCATATTTACATGGTGCTTTGTTTCTTATTTCTACTTTTTTCCTCTCTGTTTTTGATAATATAGATTCTCCAGCTTGCAAAAGTCTACAGTATTTTGTGTATTTGAGTGCCAGTGTATCTGTTTTTTCCATTTCGTAACAATAAGCACTCTTTTATTTCTTACACAAGTTTATCCTCTAATATCTCATTTGTTCTGAAACATTTCTCGGATCATTGTTGTTATAGGCATATGACTGAAAATGAAGAGGTCTTTCCTAGAGAAACACGTGTCCAGAAGGAAGTAGATTCGTGGAATAGTTTGGTAGCGACCTTTCAAATAACTAAAAAGAAGATATTTAGAAATATTTTGGAGCAGAAGAGCAGTAGCACTCATTCATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTA</genome_strand>
        <mrna_strand>AATGTAGAAGATGGTGTTCTTCAGTGAATGGTAAGGGTGAAATTTCACAGCCGTTGAAGAAATCAGAAGTGATGGTGCAACTGAAAGACAGAGATGTGGAGATAGCTGAAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGACTGAAAATGAAGAGGTCTTTCCTAGAGAAACACGTGTCCAGAAGGAAGTAGATTCGTGGAATAGTTTGGTAGCGACCTTTCAAATAACTAAAAAGAAGATATTTAGAAATATTTTGGAGCAGAAGAGCAGTAGCACTCATTCATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTTCACTGATTTATGATTTCCATCATTCAGAGTTCGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462316" ref_strand="+" ref_description="SGN-E462316 [cPRO-11-E16]">
      <seq>tgcaagagctgtcaaattcccatgagacagggacgaattgtgcagatgacacacccaagtttgcaaatatcggaagtactgtttatcgtgctccgtatgctcgtgtctcatctgtagaggacccttgtaccagaaacttggagtttgctaaagcattcccatcgagctcagacataggatcaacagttaaagaaattgccaaagctcatgcacctgatattcacactgttagagtagataacaatccagaagctgcagaaaggactcaagtgaaggaatcaccaaaaggttttaaacgcctcctgaggtttggaaagaagaaccacacctctggaggagcagaatcaaatggtgcaagcatgaatagcatgaagcaggatgatagtgccacaaatgctcccttgcctagtgaagttttcactttgaagaatttgatctcccaagatgaaaccccaactgctggcaatgtttcacagaagtctcgcctctctttgttatctccctttcgaagcaagactagcgagaataggtgacagcattcagtatcaagattattcaagtgctcctctggttgtcagctggaggtgtgattagtcacagctgtttatgacttcccaaacagtttcttttgcaatttagttactgtaaagatgtgttgtgttaagatgagaaatgtatataccttcgactgtatgtcagctttcaatgtactctacagttgggatttgcagtgaaatttttgcaagttcctatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="35939" stop="32934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35639" g_stop="35614" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35613" i_stop="34794" i_length="820">
            <donor d_prob="0.503" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34793" g_stop="34406" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="414" r_length="388" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34405" i_stop="33679" i_length="727">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33678" g_stop="33613" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="480" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33612" i_stop="33527" i_length="86">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.906" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33526" g_stop="33280" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="728" r_length="248" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="766"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E462316" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35639" e_stop="35614"/>
          <exon e_start="34793" e_stop="34406"/>
          <exon e_start="33678" e_stop="33613"/>
          <exon e_start="33526" e_stop="33280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGAGCTGTCAAATTCCCATGAGGTAGGATTACTAGAGTAGGGTGAAATCAAGAGCTGGTATCTTTGATGTTTCCATTTACACAACACAATTACTAGAATTTCTTACAGTTCAGTGACTAACTAGTATTTCAGTTGAGCATATGGTAATTACTGTTACCATGAGTAGATCATGAAGTTAAAATGTCCCTGATTTTCTTCATCAAAAATGTTCTTGATCTAGCAAACCTTTTTCCAGAAGAAGCATACTTAATTTATCTTTTTACTGAGAAAGTTGCTAATCGGACTCAAAATTGACGTGTTAGTTTTATCTGGAATATGAATCTACTTGATCTCATTTGATTTTGTTTTCTTCGGTGGCAAGGGGTATTGGGGGCATTTTAGTGTTCTTGGGTTCCTGATCTGTTGATATTCTGTGATGTGAGGGAGCTATAGTTTCAATTAATTACATGTTGGTTTAAAATTAATTTTCAGCTGCATCAGCTTAACTGAAAGAAATATATATATCTTCACCTAAACAGCCTTGTCTGGAAAACTTAGAATATAAACCTAAACAAAACTTACTGATAAAGCAGAGAAATCATATGTTTGTGTTGCATGTAATGCTCCTATGGATATTTCTAATCATTTATATGCCAGTGGATTTATTTTTATGCTTTTCATGGTTCCCAATGGGGTTATTCTCATTAGCATATGTTTAATTGCTAAAGGTTTTAATTTCTGCTTCGCTTGTTTGAGCTCTTATTGAATTAACATTACTTGTTCATTCTCAAAAACAAGAAAAGAAGAATTAGCTGTACATATGGAACAGCAGAAATTGAATCTTCCACCTTTCATATTTGCAGACAGGGACGAATTGTGCAGATGACACACCCAAGTTTGCAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCATCTGTCGAGGACCCTTGTACCAGAAACTTGGAGTTTGCTAAAGCACTTCCATCAAGCTCAGACACAGGATCAACAGTAAAAGAAATTGCCAAAGCTCATGCACCTGATATTCACACTGTTAGAGTAGATAACAATCCAGAAGCTGCAGAAAGGACTCAAGTGAAGGAATCACCAAAAGGTTTTAAACGCCTCCTGAGGTTTGGAAAGAAGAACCACATCTCTGGAGGAGCAGAATCAAATGGCGCAAACATGAATAGCATGAAGCAGGATGATAGTGTCACAAATGCTCCCTTGCCTAGTGAAGGTAACGATCTTTCAGATCTCTTAATTTGATGGCCGTAGTGGAAAACATCGATTAATACATTTCACTTGTTACATTATAAAGATGTTCTTATCCAAAAATATAATATTAGTTTTCTTATAAATCCAAAAATGAAGCTTGTGAGCAGCTATCATTTGAGCCTGCAGCCAGGCAGGGATGGTGTCTTTGCTTGGTTTTGGTCTTAGATACCAAATTCTTAATTAGCACTGCGTGATACTTTTTGCCAAATGGGGAGCATCAAAATCAGAGAACAAGAGGACAAGTAAAATAAGATGTAAAAAGAGAAGAAAACGAGTTTCATAGTGAACTGTTTGTGATTGGAAAGGAGGAGTGGTGTAAGGGTAGGGGATTAGTACTGTTGGGTTGTCAGTTGAGAAGAATGGGGGAAGCAGTTCTTGGCTGGCATGTCTTTCAACATCATGCACAGTTTTGGGGAGATTTCTTTGGTGTGTATCTACTCTAGATGACTCGATGGACAACTGTGACTTAATCCTGAATGCTTAGCTCTAATCCCATCTGCACAATTGAAAATTCATGTGTTGAAGAGTGTGCGTCTCATCTAAAGGTTTAAGCGATAAGAGAGAGCACAGTTTTACATACTTCTATTATATTCTCAATACGCTGCCTCGCGTGTGGAATCCACAACAATTTGTTCTCCCTTGTTGCTTGTCAATATCTTTTAACTGACCTTATACCTTGTCTCTTCCAGTTTTCACTTTGAAGAATTTGATCTCCCAAGATGAAACCCCAACTGCTAGCAATGTTTCACAGAAGTGTAAGATTTCATGTTATCTGCAAGTTTTACATGTTTATTATTTATATTGACGAATGACGAACTGAGGTGTTTATTCTTGGATACAGCTCGTCTCTCTTTGTTATCTCCCTTTCGAAGCAAGACTAGCGAGAAAAGGTGACAGCATTCAGTATCAAGATTATTCAAGTG---CTCTGGTTGTCAGATGGAGGTGTGATTAGTCACAGCTGTTTATGACTTCCCAAAACAGTTTCTTTCGTAAATTTAGTTACTGTAAAGATGTGTTGTGTTAAGATGAGAAATGTATATACTTTCGACTGTATGTCAACTTTCAATGTACTCTACAGTTTGGATTTA</genome_strand>
        <mrna_strand>TGCAAGAGCTGTCAAATTCCCATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGACGAATTGTGCAGATGACACACCCAAGTTTGCAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCATCTGTAGAGGACCCTTGTACCAGAAACTTGGAGTTTGCTAAAGCATTCCCATCGAGCTCAGACATAGGATCAACAGTTAAAGAAATTGCCAAAGCTCATGCACCTGATATTCACACTGTTAGAGTAGATAACAATCCAGAAGCTGCAGAAAGGACTCAAGTGAAGGAATCACCAAAAGGTTTTAAACGCCTCCTGAGGTTTGGAAAGAAGAACCACACCTCTGGAGGAGCAGAATCAAATGGTGCAAGCATGAATAGCATGAAGCAGGATGATAGTGCCACAAATGCTCCCTTGCCTAGTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACTTTGAAGAATTTGATCTCCCAAGATGAAACCCCAACTGCTGGCAATGTTTCACAGAAGT......................................................................................CTCGCCTCTCTTTGTTATCTCCCTTTCGAAGCAAGACTAGCGAGAATAGGTGACAGCATTCAGTATCAAGATTATTCAAGTGCTCCTCTGGTTGTCAGCTGGAGGTGTGATTAGTCACAGCTGTTTATGACTTCCC-AAACAGTTTCTTTTG-CAATTTAGTTACTGTAAAGATGTGTTGTGTTAAGATGAGAAATGTATATACCTTCGACTGTATGTCAGCTTTCAATGTACTCTACAGTTGGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581935" ref_strand="+" ref_description="SGN-E581935 [7568]">
      <seq>tgaacttgtatcaaagcccaaggctcggagtgccgaaccagtgtctaagacaaagcgctctgatgtgcctgagagcaagaaaatatctgccatcatagaccttgacaaaaagaaggctgcaactcttcctgagctgaaaatccgaaccaccaaagagtcgtcagatttactacaagacaaaccagctgcggagaacatagctatggagaagaatgttaggccttctgtagcatatgaagtcattgaatcatacaagaatgatctagatgaaaacattattgagaaaactgttgttatgcttgagaaggagaagaagccctctttggctgttcccagttcatcatcagagaacttggctatggcagaatgtgacaacattaacagtgttgagagaactgactatgcctctacacgtganccaccgtgcacctttgaaggatttattagagcacctggctcctagccgactggaagagctgtcaaattcccatgagaccagggacgaattgtgcagatgacaaaccaagtttggaaatatcggaagtactgtttatcgtgctccgtatgctcgtgtctcatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="36406" stop="34405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36106" g_stop="35614" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35613" i_stop="34794" i_length="820">
            <donor d_prob="0.503" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34793" g_stop="34705" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="583" r_length="89" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E581935" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36106" e_stop="35614"/>
          <exon e_start="34793" e_stop="34705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTTGTATCAAAGCCCAAGGCTCGGAGTGCCGAACCAGTGTCTAAGACAAAGCGCTCTGATGTGCCAGAGAGCAAGAAAATATCTGCCATCATAGACCTTGACAAAAAGAAGGCTGCAACTCTTCCTGAGCTGAAAATCCGAACCACCAAAGAGTCGTCAGATTTACGACAAGACAAACTAACTGCGGAGAATATAGCTACGGAGAAGAATGACAGGCCTTCTGTAGCATCTGAAGGCATTGAATCATACAAGAATGATCTAGATGAAAACATTATTGAGAAAACTGTTGTTATGCTTGAGAAGGAGAAGAAACCCTCTTTGGCTGTTCCCAGTTCATCATCAGAGAACTTGGCTGTGGAAGAATGTGACAAGATTAACAGTGTTGAGAGAACTGACTATGCCTCTACACGTGACCCACCGTCACCCTTTGAAGGATTTATTAGAGCACCT-GTTCCTAGCCGACTGCAAGAGCTGTCAAATTCCCATGAGGTAGGATTACTAGAGTAGGGTGAAATCAAGAGCTGGTATCTTTGATGTTTCCATTTACACAACACAATTACTAGAATTTCTTACAGTTCAGTGACTAACTAGTATTTCAGTTGAGCATATGGTAATTACTGTTACCATGAGTAGATCATGAAGTTAAAATGTCCCTGATTTTCTTCATCAAAAATGTTCTTGATCTAGCAAACCTTTTTCCAGAAGAAGCATACTTAATTTATCTTTTTACTGAGAAAGTTGCTAATCGGACTCAAAATTGACGTGTTAGTTTTATCTGGAATATGAATCTACTTGATCTCATTTGATTTTGTTTTCTTCGGTGGCAAGGGGTATTGGGGGCATTTTAGTGTTCTTGGGTTCCTGATCTGTTGATATTCTGTGATGTGAGGGAGCTATAGTTTCAATTAATTACATGTTGGTTTAAAATTAATTTTCAGCTGCATCAGCTTAACTGAAAGAAATATATATATCTTCACCTAAACAGCCTTGTCTGGAAAACTTAGAATATAAACCTAAACAAAACTTACTGATAAAGCAGAGAAATCATATGTTTGTGTTGCATGTAATGCTCCTATGGATATTTCTAATCATTTATATGCCAGTGGATTTATTTTTATGCTTTTCATGGTTCCCAATGGGGTTATTCTCATTAGCATATGTTTAATTGCTAAAGGTTTTAATTTCTGCTTCGCTTGTTTGAGCTCTTATTGAATTAACATTACTTGTTCATTCTCAAAAACAAGAAAAGAAGAATTAGCTGTACATATGGAACAGCAGAAATTGAATCTTCCACCTTTCATATTTGCAGA-CAGGGACGAATTGTGCAGATGACACACCCAAGTTTGCAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCATCTGT</genome_strand>
        <mrna_strand>TGAACTTGTATCAAAGCCCAAGGCTCGGAGTGCCGAACCAGTGTCTAAGACAAAGCGCTCTGATGTGCCTGAGAGCAAGAAAATATCTGCCATCATAGACCTTGACAAAAAGAAGGCTGCAACTCTTCCTGAGCTGAAAATCCGAACCACCAAAGAGTCGTCAGATTTACTACAAGACAAACCAGCTGCGGAGAACATAGCTATGGAGAAGAATGTTAGGCCTTCTGTAGCATATGAAGTCATTGAATCATACAAGAATGATCTAGATGAAAACATTATTGAGAAAACTGTTGTTATGCTTGAGAAGGAGAAGAAGCCCTCTTTGGCTGTTCCCAGTTCATCATCAGAGAACTTGGCTATGGCAGAATGTGACAACATTAACAGTGTTGAGAGAACTGACTATGCCTCTACACGTGANCCACCGTGCACCTTTGAAGGATTTATTAGAGCACCTGGCTCCTAGCCGACTGGAAGAGCTGTCAAATTCCCATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGGACGAATTGTGCAGATGACA-AACCAAGTTTGGAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCATCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229005" ref_strand="+" ref_description="SGN-E229005 [cLEL-29-O9](-)">
      <seq>agcatactaataagctagacaaagcttcctcacataatagactgatgagtcttttgtagtacctttaggtcaatgtcattgactgacgttggacagatggtagaactngccattaacatggactctgagcttccattggcgcatcaaaaatcagaaaacagnctctgctgggattatgagttacgagcctaatgattttagcttgatgtctgagcgtggaacagaaaaaaggttgggtctctatgaccctgctttagactatgaaatgcaagtttgcaatgaaggttctgcttcaaaggataaaagaaagaatggagtctccaatgatgttaaggaaggttcaaaaaaatcagagaaagatcgcaggtcaaaagctactgttgatacttcggacaagaaaaggagtggaggaccaataagaaaaggaaaaatgtcaaagtcaagtcctttggatgatgcacgagcacgtgctgagaggataagatccttcaaagctgatatgcagaagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="37527" stop="8857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37227" g_stop="36704" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36703" i_stop="36553" i_length="151">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36552" g_stop="36547" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="529" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E229005" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37227" e_stop="36704"/>
          <exon e_start="36552" e_stop="36547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATATGACTGATGAGTCTTTTGTAGTACCTTTTAGGTCAATGTCATTGACTGACGTTGGACCAGATGGTAGAACT-GCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAG-CTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAGGTACACTGACTCAACCTTTTCTCACTTTACCCCTTTTTCCACAGATGACGATTTTAGTGATTGATATATCGCTTGATATTTCTTGGAAATCTAACCTGTTTATGATATATTCTCCTCCAAGTTTAATAGGTGGAACTTTAAAATTTTGCAGGAAGAG</genome_strand>
        <mrna_strand>AGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATA-GACTGATGAGTCTTTTGTAGTACC-TTTAGGTCAATGTCATTGACTGACGTTGGA-CAGATGGTAGAACTNGCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGNCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAAAAAAA.......................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229015" ref_strand="+" ref_description="SGN-E229015 [cLEL-29-P24](-)">
      <seq>aatgtcatgactgacgttggaccagaaggtagaactgcccataacatggactctgagcttccattggcgcatcaaaaatcagaaaacagctctgctgggattatgagttacgagcctaatgattttagcttgatgtctgagcgtggaacagaaaaaaggttgggtctctatgaccctgctttagactatgaaatgcaagtttgcaatgaaggttctgcttcaaaggataaaagaaagaatggagtctccaatgatgttaaggaaggttcaaaaaaatcagagaaagatcgcaggtcaaaagctactgttgatacttcggacaagaaaaggagtggaggaccaataagaaaaggaaaaatgtcaaagtcaagtcctttggatgatgcacgagcacgtgctgagaggataagatccttcaaagctgatatgcagaagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="37454" stop="8857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37154" g_stop="36704" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36703" i_stop="36553" i_length="151">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36552" g_stop="36547" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="456" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E229015" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37154" e_stop="36704"/>
          <exon e_start="36552" e_stop="36547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTCATTGACTGACGTTGGACCAGATGGTAGAACTGCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAGGTACACTGACTCAACCTTTTCTCACTTTACCCCTTTTTCCACAGATGACGATTTTAGTGATTGATATATCGCTTGATATTTCTTGGAAATCTAACCTGTTTATGATATATTCTCCTCCAAGTTTAATAGGTGGAACTTTAAAATTTTGCAGGAAGAG</genome_strand>
        <mrna_strand>AATGTCA-TGACTGACGTTGGACCAGAAGGTAGAACTGCCCATAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAAAAAAA.......................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228909" ref_strand="+" ref_description="SGN-E228909 [cLEL-29-O9](-)">
      <seq>gcttccattggcgcatcaaaaatcagaaaacagctctgctgggattatgagttacgagcctaatgattttagcttgatgtctgagcgtggaacagaaaaaaggttgggtctctatgaccctgctttagactatgaaatgcaagtttgcaatgaaggttctgcttcaaaggataaaagaaagaatggagtctcccatgatgttaaggaaggttcaaaaaaatcagagaaagatcgcaggtcaaaagctactgttgatacttcggacaagaaaaggagtggaggaccaataagaaaaggaaaaatgtcaaagtccagtcctttggatgatgcacgagcacgtgctgagaggataagatccttcaaagctgatatgcagaagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="37397" stop="8857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37097" g_stop="36704" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36703" i_stop="36553" i_length="151">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36552" g_stop="36547" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="400" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E228909" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37097" e_stop="36704"/>
          <exon e_start="36552" e_stop="36547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAGGTACACTGACTCAACCTTTTCTCACTTTACCCCTTTTTCCACAGATGACGATTTTAGTGATTGATATATCGCTTGATATTTCTTGGAAATCTAACCTGTTTATGATATATTCTCCTCCAAGTTTAATAGGTGGAACTTTAAAATTTTGCAGGAAGAG</genome_strand>
        <mrna_strand>GCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCCATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCCAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAAAAAAA.......................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325471" ref_strand="+" ref_description="SGN-E325471 [cTOC-1-F8]">
      <seq>gaaagggtatcaccattgattgagatcttgagattgaggaagcaatgcccttcaaggaaacaatgtagtgggcaggggccagctgaatacaaagaagctaaaccagcaggaaacattgcaggtactaaatctacagcagatgtcaatgaggagaaagctattgttctttacaagccgggggaagatcaacctcaaacagatttgcaggaagaaaattcaagagtacagtttctgaaggtcctggagactcgcaagtctgtgcttcaaaaagaacaaggaatggcatttgctcgtgctgtagctgctggttttgatattgatcgtatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="40932" stop="38799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40632" g_stop="40546" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40545" i_stop="40464" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40463" g_stop="40424" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="121" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40423" i_stop="40050" i_length="374">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40049" g_stop="39997" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="174" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39996" i_stop="39920" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39919" g_stop="39873" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="221" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39872" i_stop="39208" i_length="665">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39207" g_stop="39099" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="330" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E325471" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40632" e_stop="40546"/>
          <exon e_start="40463" e_stop="40424"/>
          <exon e_start="40049" e_stop="39997"/>
          <exon e_start="39919" e_stop="39873"/>
          <exon e_start="39207" e_stop="39099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGTATACACCATTGAATCTGAGATCTTGCAGATTGAGGAAGCAATAGCCCTTCAAGGAAACAATGATAGTGGGCAGGGGCCAGTAAGTATTTACTTGATCTTCAGAAATTCCATGTGTCATTGATTGTCAAGACGCCACTCCAACAATTTTATTTCTTCAACAGGCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAGGTACTTCTGAGTGAAAACTTGTATCATTATTAACAGAACAAGGCCAATTCATTTTCTTTTTCGTTCTCATCATCACACAGGTCAAGTGGTACTCTGTTCTAAACTCTATGGTCTTGGTTTCTTGGCTAATTTGACTCTTCCACTTTTAACTTTTTCCCCCCTTCAATTGCTCATTGTTTGGTTCCTCCATTTGCAAGGAAATATTGCTTTTGATATCAATCTAGACAGTCTAAGTTCCTTACTTATTTTTGTCAATAAATCTTTCTTCTTCTTCCATCTTCTATCAGCTAAATAGCAGTGGGCTTTATCATCCAGTGTTATGTGAAATTGCTAGTCTATGACACAAGGTACTGAAAACACTGAACTATGGGCAGGTACTAAATCTACAGCAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAGGTGACTGAACACATTGTATTCTTTCAAGTGTTCCACACTTTATGCATTTATCCTTATCTGGTTTATTTTTCGGGCAGCCGGGGGAAGATCAACCTCAAACAGATTTGCAGGAAGAAAATTCAAGGTATGTGAGTGGCAAATCATTTCAGCAGATTTTTCTGTTCGTTGAAATTACAGGAGACTGTGGTCTCACTTTATCATCATGTGGATTAGGATCGTTGATGATAATTTATCAAGTAGAAGAATTTGACAGATTCTTTTTTGCATCTTTGTTCCTTTGTCAGTGGCGATGTAGCCTTAGGTATGGGTTTAACCGAACTCATATTTTTGACCCGGAACATTTATGATCCTCCACATTATTCAAACCATGGCTAGTCAAAGTTCACTATTATTTCTTTATCTATTGTACGCCTGTCTTTGTTCACGATTCTCTGCTTAAAAACAAATCCTTGTTCCCAGCCCCTTAGTCTTTATGCATGTCGGCTTGTTTCAATATTGCATATTATGTTGGCGAGTCCACTCTCATTGGCCTCCAAACTGGGCCAGTCAAAATAAAGGCTGGATTCACTTGTATTTTATTTCCATTTTTTAGTTTTGACATAAGGTGTGTGTCACCAGCCTATGCTCATGCTTTCTGAAGTTTCCTTCAGTTTGTTATTGGTTTGGTAGGCCTTAAAGAATCTCTAGAAACTTATATGGAGTCCTTTGCGCTTGTTACATATATGAAAAGCCTAATTATTCAAGTTTAGTAACAGCTCGAACGCATTTTGATTGCTTTTTCTTATCCAGAGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGATCGTATGACA</genome_strand>
        <mrna_strand>GAAAGGGTAT-CACCATTG-AT-TGAGATCTTG-AGATTGAGGAAGCAAT-GCCCTTCAAGGAAACAATG-TAGTGGGCAGGGGCCA..................................................................................GCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAG......................................................................................................................................................................................................................................................................................................................................................................................GTACTAAATCTACAGCAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAG.............................................................................CCGGGGGAAGATCAACCTCAAACAGATTTGCAGGAAGAAAATTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGATCGTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372235" ref_strand="+" ref_description="SGN-E372235 [TUS-30-F21](-)">
      <seq>ggagggctgtaatgggaagcagccggcccagctcatctggcgaacccactgacaatcgctctggtcgcttaggttcaagcagcggccgcatttccactacccaaagagtacaacctggatttgaatccaagtcttcatcttttacccgcgctactgcaactagagggggtagggatgatgctcttaggagctttgagttactaactattggcaccggaagaaggaaatgaggctatataatgtctaatatctacccccaagttgaacagcaagttgagcagctatcttcaaggacttatcaacaagcatgcactgattcttgcaatttaacaaacttgctaaactttcaagagatagaggggtgtttctgttttgtatatttgagaatacctctttaatgtgatgttgtagaccgggatctctctcgaaaaataaaaaatatttcacatctggccattgctcccctgatgtgcatggctgctatgcttgcgaacggggaggatgttaatggcgaaagtaaatagctcatggttatgcagtgtagctccgattacttaaggggctacctcagtacttccttttagttgtgtggttcttgtgcccagaattgttatcatatacttttatgttatgtaccctctaatttttcttcctatattaacttgttactatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="53669" stop="52286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53369" g_stop="53109" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52999" g_stop="52585" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="676" r_length="415" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E372235" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53369" e_stop="53109"/>
          <exon e_start="52999" e_stop="52585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAGGTACCAAAACTTTTAACCGCTGATATCATGATATTCAAGTACTATTTTCTTATTCTTGATACTACTCCTCAGCTAATATGAACTTATCGTTACCGTCTTTTCCTTATAGTTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTGCTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTATATTAACTTGTTACTATGAAC</genome_strand>
        <mrna_strand>GGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG.............................................................................................................TTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTTTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTGCTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTTTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTATATTAACTTGTTACTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366631" ref_strand="-" ref_description="SGN-E366631 [cLPT-17-E23]">
      <seq>gtagggatgatgctcttaggagctttgagctactaactattggcactggaagaaggaaatgaggctatataatgtctaatatctacccccaagttgaacagcaggttgagcagctatctcaaggacttcccaacaagcatgcactgattcttgcaatttaacaaacttgctaaactttcaagagatagaggggtgtttctgttttgtatatttgagaatacctctctaatgtgatgttgtagaccgggatctgtctcgaacaataaaaatatttcacgtctggccattgctccccttttttcccctgatgtgcatggctgctatgggaggatgttaatggcgaaagtaaatagctcatggttatgcagtgtagctccgattacttaaggggctacctcagtacttcctcttagttgtgtgcccagaattgttatcacatactttatgttatgtaccctctaatttttcttcctatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="53501" stop="52300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53201" g_stop="53109" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52999" g_stop="52605" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="475" r_length="382" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="495"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E366631" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366631" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53201" e_stop="53109"/>
          <exon e_start="52999" e_stop="52605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAGGTACCAAAACTTTTAACCGCTGATATCATGATATTCAAGTACTATTTTCTTATTCTTGATACTACTCCTCAGCTAATATGAACTTATCGTTACCGTCTTTTCCTTATAGTTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTG-CTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTAT</genome_strand>
        <mrna_strand>GTAGGGATGATGCTCTTAGGAGCTTTGAGCTACTAACTATTGGCACTGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG.............................................................................................................TTGAACAGCAGGTTGAGCAGCTATC-TCAAGGACTTCCCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTGTCTCGAACAAT-AAAAATATTTCACGTCTGGCCATTGCTCCCCTTTTTTCCCCTGATGTGCATGGCTGC-TA-TGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTA---GT-T-G----TGTGCCCAGAATTGTTATCACATAC-TTTATGTTATGTACCCTCTAATTTTTCTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744453" ref_strand="+" ref_description="SGN-E744453 [GI|399618]">
      <seq>ctactcttaccgcggctacctgccaactagaggggtagggatgatgctcttaggagctttgagttactaactattgcaccgaagaggaaatgaggctatataatgtctaatatctacccccaagttgaacagcaagttgagcagctatcttcaaggacttatcaacaagcatgcactgattcttgcaatttaacaaacttgctaaactttcaagagatagaggggtgtttctgttttgtatatttgagaatacctctctaatgtgatgttgtagaccgggatctctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="53531" stop="52534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53234" g_stop="53109" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52999" g_stop="52834" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="290" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E744453" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53234" e_stop="53109"/>
          <exon e_start="52999" e_stop="52834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTTTACCCGCGCTA-CTG-CAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAGGTACCAAAACTTTTAACCGCTGATATCATGATATTCAAGTACTATTTTCTTATTCTTGATACTACTCCTCAGCTAATATGAACTTATCGTTACCGTCTTTTCCTTATAGTTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCG</genome_strand>
        <mrna_strand>CTACTCTTACCGCGGCTACCTGCCAACTAGAGGG-GTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATT-GCACC-GAAG-AGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG.............................................................................................................TTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459269" ref_strand="+" ref_description="SGN-E459269 [cPRO-27-G24]">
      <seq>caagattagtgagaagaagatgcttacacctatagaggtcctttgcaaatcctatccctcagaattcatatcttattttcattattgccgatcattacggtttgatgacaagccagattactcatacctaaagaggctattccgtgaccttttcattagagagggttatcaatttgactatgtgtttgattggactatcttgaagtatccccagatcggctccagttcaagagcacgacaacctattgcaagattacctgtgaatccgggaccatccattgaaagaccagaaaagatccctgtgaggcaggaaattaaagataggttttctggtgctgtggaggcgttttctagaaggaacatgcctggaactggtttgcaaggggaccatttgagacatcacagatcatctgacgatgtaccatcatctaaggatatgcaagctgatgctgaaagaggccgtgtatctcggactggtagcacctcgaggagggctgtaatgggaagcagccggcccagctcatctggcgaacccactgacaatcgctctggtcgcttaggttcaagcagtggccgcatttccactacccaaagagtacaacctgggatttgaatccaagtcttcatcttttacccgtgctactgcaacaagagggggtagggatgatgctcttanngagcttgagctactaactattggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="55191" stop="52856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54891" g_stop="54855" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54854" i_stop="54710" i_length="145">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.793" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54709" g_stop="54583" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="164" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54582" i_stop="54464" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54463" g_stop="54390" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="238" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54389" i_stop="54297" i_length="93">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54296" g_stop="54233" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="302" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54232" i_stop="53715" i_length="518">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53714" g_stop="53578" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="439" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53577" i_stop="53419" i_length="159">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53418" g_stop="53155" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="704" r_length="265" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E459269" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54891" e_stop="54855"/>
          <exon e_start="54709" e_stop="54583"/>
          <exon e_start="54463" e_stop="54390"/>
          <exon e_start="54296" e_stop="54233"/>
          <exon e_start="53714" e_stop="53578"/>
          <exon e_start="53418" e_stop="53155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTAGTGAGAAGAAGATGCTTACACCTATAGAGGTAGTGACTTTATGTACATTATTTATACATGCCAAATATTATCTGTCCTACAGAGAAGTACCGGGTCTTGTGAATATATCTGTCCTAAACTATGCTCTCTCATCAAACTGCATAATGACATATTCCACTGTTCTCTGTTAAACAGGTGCTTTGCAAATCCTATCCTTCAGAATTCATATCATATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGGGTAAGTTTCTGTTTCATGATAGTTTCAATATTCTGTTTCCTCCTTTATATAATCTCTTTCGCACTACAAGTATATTTCTGTAGTCTTATACGACAAAATTCTTTTTGCATGCATTGCAGGTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGAGTCTGTCTTTAATCTACTCTTGCTAAAAATTATCTACTGTTTTATTTTTGCATTCTAGAAGATGCCCTAATCTTACATTTTGTGTATTTTCAGCAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTGGTACTGTTACAAGAAACTGCATCTTCAAAGAATAAGAAATAGTAGCTTACATTCCTCGTATGATTATTTATGTTTGGGCGGGCTCATGGTGCTTGACCTTTGTCGTCAATCTAATCCATGCTTTTGACAAAATAGCCAATTATTGCAAGCAGAATAGCACTTCAAATCTCTTATTATATGTAGTTTCAGAAGACCCACTTGAAACACATAAATGTAAGTTTGCATGTGTGACCCATTCAATGGCAGTGGGAGAGATGTACAATGCTCAAGTATGTGACTAGAAGTTGCAGCTATCCTTGAGGATTTCTTAAATATGCGGAAATGGGTGCTGTCCAATTAATGATAAGAAGTGTGTCAAATCATCCCCTCTGAAAAATAAAACCCAATACGAACTATAGGTGGCTGGGGCATTTTGTTTTGTTTCTTTTTCCTCCCGTGTTTTTTTTGTTGGTTGAATGTATGTCATCATGTTACAGATTTGTAGGCTAATTTTAAGATTTGTCTGATCTCTTGTACAGTGAGGCAGGAAATCAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACGTGTCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATGTGGTAAGCAGCGAATGTGATATCTTTTTTCTGCCTGGGATTCCGTATAATATTTTGGCATCCTCTCAATTTACAGTCATCAGTTTGTTCCTACCTGGAGCTTTCTTGGTGTCTGAACTGCTCATTATAGGTTATTATCTGATGCACTTGTTAACATTTCAGCAAGCTGATGCTGAAAGAGGCCGTGTATCTCGGACTGGTAGCACCTCGAGGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCT-GGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTA-GGAGCTTTGAGTTACTAACTATTGGCACC</genome_strand>
        <mrna_strand>CAAGATTAGTGAGAAGAAGATGCTTACACCTATAGAG.................................................................................................................................................GTCCTTTGCAAATCCTATCCCTCAGAATTCATATCTTATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGG.......................................................................................................................GTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGA.............................................................................................CAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAGGAAATTAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACATGCCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATATG...............................................................................................................................................................CAAGCTGATGCTGAAAGAGGCCGTGTATCTCGGACTGGTAGCACCTCGAGGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGTGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGGATTTGAATCCAAGTCTTCATCTTTTACCCGTGCTACTGCAACAAGAGGGGGTAGGGATGATGCTCTTANNGAGC-TTGAGCTACTAACTATTGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423302" ref_strand="+" ref_description="SGN-E423302 [STM-41-H8]">
      <seq>gttgaacaaagcagaagagatgatctggagtctcttggttatgtgcttatgtattttttgagaggaagtctgccatggcaaggtctgaaagctggcaccaaaaagcagaaatatgacaagattagtgagaagaagatgcttacacctatagaggtcctttgcaaatcctatccctcagaattcatatcttattttcattattgccgatcattacggtttgatgacaagccagattactcatacctaaagaggctattccgtgaccttttcattagagagggttatcaatttgactatgtgtttgattggactatcttgaagtatccccagatcggctccagttcaagagcacgacaacctattgcaagattacctgtgaatccgggaccatccattgaaagaccagaaaagatccctgtgaggcaggaaattaaagataggttttctggtgctgtggaggcgttttctagaaggaacatgcctggaactggtttgcaaggggaccatttgagacatcacagatcatctgacgatgtaccatcatctaaggatatgcaagctgatgctgaaagaggccgtgtatctcggactggtagcacctcgaggagggctgtaatgggaagcagccggcccagctcatctggcgaacccactgacaatcgctctggtcgcttaggttcaagcagtggccgcatttccactaccaaagagtacaacctggatttgaatcaagtcttcatcttttaccgtgctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="62658" stop="52916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55186" g_stop="55183" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55182" i_stop="55105" i_length="78">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55104" g_stop="55041" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="68" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55040" i_stop="54940" i_length="101">
            <donor d_prob="0.382" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54939" g_stop="54855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="153" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54854" i_stop="54710" i_length="145">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.793" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54709" g_stop="54583" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="280" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54582" i_stop="54464" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54463" g_stop="54390" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="354" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54389" i_stop="54297" i_length="93">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54296" g_stop="54233" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="418" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54232" i_stop="53715" i_length="518">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53714" g_stop="53578" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="555" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53577" i_stop="53419" i_length="159">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53418" g_stop="53216" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="755" r_length="200" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E423302" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55186" e_stop="55183"/>
          <exon e_start="55104" e_stop="55041"/>
          <exon e_start="54939" e_stop="54855"/>
          <exon e_start="54709" e_stop="54583"/>
          <exon e_start="54463" e_stop="54390"/>
          <exon e_start="54296" e_stop="54233"/>
          <exon e_start="53714" e_stop="53578"/>
          <exon e_start="53418" e_stop="53216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTAAGTGAGGATGATATTACACCAAGTACCTAGTAGTACGTTAAACTTTACATAATCACCTCTCTTCCTTGTATGCAGAACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAGGTTCGGCAGTTACAGATATAGTTTATGTTTGGTGCCTGTTTCTCTATTTCCATGTGCATTACTTGTTTCTTACAATTAGCATATTTGCTTGTGTTTTTTAGTCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAGGATTAGTGAGAAGAAGATGCTTACACCTATAGAGGTAGTGACTTTATGTACATTATTTATACATGCCAAATATTATCTGTCCTACAGAGAAGTACCGGGTCTTGTGAATATATCTGTCCTAAACTATGCTCTCTCATCAAACTGCATAATGACATATTCCACTGTTCTCTGTTAAACAGGTGCTTTGCAAATCCTATCCTTCAGAATTCATATCATATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGGGTAAGTTTCTGTTTCATGATAGTTTCAATATTCTGTTTCCTCCTTTATATAATCTCTTTCGCACTACAAGTATATTTCTGTAGTCTTATACGACAAAATTCTTTTTGCATGCATTGCAGGTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGAGTCTGTCTTTAATCTACTCTTGCTAAAAATTATCTACTGTTTTATTTTTGCATTCTAGAAGATGCCCTAATCTTACATTTTGTGTATTTTCAGCAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTGGTACTGTTACAAGAAACTGCATCTTCAAAGAATAAGAAATAGTAGCTTACATTCCTCGTATGATTATTTATGTTTGGGCGGGCTCATGGTGCTTGACCTTTGTCGTCAATCTAATCCATGCTTTTGACAAAATAGCCAATTATTGCAAGCAGAATAGCACTTCAAATCTCTTATTATATGTAGTTTCAGAAGACCCACTTGAAACACATAAATGTAAGTTTGCATGTGTGACCCATTCAATGGCAGTGGGAGAGATGTACAATGCTCAAGTATGTGACTAGAAGTTGCAGCTATCCTTGAGGATTTCTTAAATATGCGGAAATGGGTGCTGTCCAATTAATGATAAGAAGTGTGTCAAATCATCCCCTCTGAAAAATAAAACCCAATACGAACTATAGGTGGCTGGGGCATTTTGTTTTGTTTCTTTTTCCTCCCGTGTTTTTTTTGTTGGTTGAATGTATGTCATCATGTTACAGATTTGTAGGCTAATTTTAAGATTTGTCTGATCTCTTGTACAGTGAGGCAGGAAATCAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACGTGTCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATGTGGTAAGCAGCGAATGTGATATCTTTTTTCTGCCTGGGATTCCGTATAATATTTTGGCATCCTCTCAATTTACAGTCATCAGTTTGTTCCTACCTGGAGCTTTCTTGGTGTCTGAACTGCTCATTATAGGTTATTATCTGATGCACTTGTTAACATTTCAGCAAGCTGATGCTGAAAGAGGCCGTGTATCTCGGACTGGTAGCACCTCGAGGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTAC</genome_strand>
        <mrna_strand>GTTG..............................................................................AACAAAGCAGAAGAGATGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAG.....................................................................................................TCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAAGATTAGTGAGAAGAAGATGCTTACACCTATAGAG.................................................................................................................................................GTCCTTTGCAAATCCTATCCCTCAGAATTCATATCTTATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGG.......................................................................................................................GTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGA.............................................................................................CAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAGGAAATTAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACATGCCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATATG...............................................................................................................................................................CAAGCTGATGCTGAAAGAGGCCGTGTATCTCGGACTGGTAGCACCTCGAGGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGTGGCCGCATTTCCACTA-CCAAAGAGTACAACCTGGATTTGAAT-CAAGTCTTCATCTTTTA-CCGTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450147" ref_strand="+" ref_description="SGN-E450147 [cSTS-8-D21]">
      <seq>gttgaacaaagcagaagagatgatctggagtctcttggttatgtgcttatgtattttttgagaggaagtctgccatggcaaggtctgaaagctggcaccaaaaagcagaaatatgacaagattagtgagaagaagatgcttacacctatagaggtcctttgcaaatcctatccctcagaattcatatcttattttcattattgccgatcattacggtttgatgacaagccagattactcatacctaaagaggctattccgtgaccttttcattagagagggttatcaatttgactatgtgtttgattggactatcttgaagtatccccagatcggctccagttcaagagcacgacaacctattgcaagattacctgtgaatccgggaccatccattgaaagaccagaaaagatccctgtgaggcaggaaattaaagataggttttctggtgctgtggaggcgttttctagaaggaacatgcctggaactggtttgcaaggggaccatttgagacatcacagatcatctgacgatgtaccatcatctaaggatatgcaagctgatgctgaaagaagccgtgtatctcggactggtagcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="62658" stop="53073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55186" g_stop="55183" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55182" i_stop="55105" i_length="78">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55104" g_stop="55041" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="68" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55040" i_stop="54940" i_length="101">
            <donor d_prob="0.382" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54939" g_stop="54855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="153" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54854" i_stop="54710" i_length="145">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.793" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54709" g_stop="54583" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="280" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54582" i_stop="54464" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54463" g_stop="54390" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="354" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54389" i_stop="54297" i_length="93">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54296" g_stop="54233" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="418" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54232" i_stop="53715" i_length="518">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53714" g_stop="53578" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="555" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="53577" i_stop="53419" i_length="159">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="53418" g_stop="53373" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="601" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E450147" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55186" e_stop="55183"/>
          <exon e_start="55104" e_stop="55041"/>
          <exon e_start="54939" e_stop="54855"/>
          <exon e_start="54709" e_stop="54583"/>
          <exon e_start="54463" e_stop="54390"/>
          <exon e_start="54296" e_stop="54233"/>
          <exon e_start="53714" e_stop="53578"/>
          <exon e_start="53418" e_stop="53373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTAAGTGAGGATGATATTACACCAAGTACCTAGTAGTACGTTAAACTTTACATAATCACCTCTCTTCCTTGTATGCAGAACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAGGTTCGGCAGTTACAGATATAGTTTATGTTTGGTGCCTGTTTCTCTATTTCCATGTGCATTACTTGTTTCTTACAATTAGCATATTTGCTTGTGTTTTTTAGTCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAGGATTAGTGAGAAGAAGATGCTTACACCTATAGAGGTAGTGACTTTATGTACATTATTTATACATGCCAAATATTATCTGTCCTACAGAGAAGTACCGGGTCTTGTGAATATATCTGTCCTAAACTATGCTCTCTCATCAAACTGCATAATGACATATTCCACTGTTCTCTGTTAAACAGGTGCTTTGCAAATCCTATCCTTCAGAATTCATATCATATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGGGTAAGTTTCTGTTTCATGATAGTTTCAATATTCTGTTTCCTCCTTTATATAATCTCTTTCGCACTACAAGTATATTTCTGTAGTCTTATACGACAAAATTCTTTTTGCATGCATTGCAGGTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGAGTCTGTCTTTAATCTACTCTTGCTAAAAATTATCTACTGTTTTATTTTTGCATTCTAGAAGATGCCCTAATCTTACATTTTGTGTATTTTCAGCAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTGGTACTGTTACAAGAAACTGCATCTTCAAAGAATAAGAAATAGTAGCTTACATTCCTCGTATGATTATTTATGTTTGGGCGGGCTCATGGTGCTTGACCTTTGTCGTCAATCTAATCCATGCTTTTGACAAAATAGCCAATTATTGCAAGCAGAATAGCACTTCAAATCTCTTATTATATGTAGTTTCAGAAGACCCACTTGAAACACATAAATGTAAGTTTGCATGTGTGACCCATTCAATGGCAGTGGGAGAGATGTACAATGCTCAAGTATGTGACTAGAAGTTGCAGCTATCCTTGAGGATTTCTTAAATATGCGGAAATGGGTGCTGTCCAATTAATGATAAGAAGTGTGTCAAATCATCCCCTCTGAAAAATAAAACCCAATACGAACTATAGGTGGCTGGGGCATTTTGTTTTGTTTCTTTTTCCTCCCGTGTTTTTTTTGTTGGTTGAATGTATGTCATCATGTTACAGATTTGTAGGCTAATTTTAAGATTTGTCTGATCTCTTGTACAGTGAGGCAGGAAATCAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACGTGTCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATGTGGTAAGCAGCGAATGTGATATCTTTTTTCTGCCTGGGATTCCGTATAATATTTTGGCATCCTCTCAATTTACAGTCATCAGTTTGTTCCTACCTGGAGCTTTCTTGGTGTCTGAACTGCTCATTATAGGTTATTATCTGATGCACTTGTTAACATTTCAGCAAGCTGATGCTGAAAGAGGCCGTGTATCTCGGACTGGTAGCACCT</genome_strand>
        <mrna_strand>GTTG..............................................................................AACAAAGCAGAAGAGATGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAG.....................................................................................................TCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAAGATTAGTGAGAAGAAGATGCTTACACCTATAGAG.................................................................................................................................................GTCCTTTGCAAATCCTATCCCTCAGAATTCATATCTTATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGG.......................................................................................................................GTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGA.............................................................................................CAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAGGAAATTAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACATGCCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATATG...............................................................................................................................................................CAAGCTGATGCTGAAAGAAGCCGTGTATCTCGGACTGGTAGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559283" ref_strand="+" ref_description="SGN-E559283 [18756]">
      <seq>attaagcctgacaacttcttaatgggtttagggcgtaaagcaaatcaggtatacatcattgactatggtcttgccaagaaatacagagatcttcagacacacaagcatataccatacagggaaaacaaaaacctcacaggaacagctcgttatgctagtgttaacacccatcttggagttgaacaaagcagaagagatgatctggagtctcttggttatgtgcttatgtattttttgagaggaagtctgccatggcaaggtctgaaagctggcaccaaaaagcagaaatatgacaagattagtgagaagaagatgcttacacctatagaggtcctttgcaaatcctatccctcagaattcatatcttattttcattattgccgatcattacggtttgatgacaagccagattactcatacctaaagaggctattccgtgaccttttcattagagagggttatcaatttgactatgtgtttgattggactatcttgaagtatccccagatcggctccagttcaagagcacgacaacctattgcaagattacctgtgaatccgggaccatccattgaaagaccagaaaagatccctgtgaggcaggaaattaaagataggttttctggtgctgtggaggcgtttctagaaggaacatgcctggaactggtttgcaaggggaacatttgagacctcacagatcatctgacgatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="57134" stop="53295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56834" g_stop="56787" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56786" i_stop="55955" i_length="832">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55954" g_stop="55884" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="119" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55883" i_stop="55245" i_length="639">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55244" g_stop="55183" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="181" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55182" i_stop="55105" i_length="78">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55104" g_stop="55041" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="245" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55040" i_stop="54940" i_length="101">
            <donor d_prob="0.382" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54939" g_stop="54855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="330" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54854" i_stop="54710" i_length="145">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.793" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54709" g_stop="54583" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="457" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54582" i_stop="54464" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54463" g_stop="54390" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="531" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54389" i_stop="54297" i_length="93">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54296" g_stop="54233" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="595" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54232" i_stop="53715" i_length="518">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53714" g_stop="53595" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="714" r_length="119" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E559283" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56834" e_stop="56787"/>
          <exon e_start="55954" e_stop="55884"/>
          <exon e_start="55244" e_stop="55183"/>
          <exon e_start="55104" e_stop="55041"/>
          <exon e_start="54939" e_stop="54855"/>
          <exon e_start="54709" e_stop="54583"/>
          <exon e_start="54463" e_stop="54390"/>
          <exon e_start="54296" e_stop="54233"/>
          <exon e_start="53714" e_stop="53595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGCCCGACAACTTTTTAATGGGTTTAGGGCGTAAAGCAAATCAGGTGTGTACTTCATCATATGTTCTCGAAGTGTAGATGTAAATGCCCTATACATTTGCACTTGATATTTTCGGAAAGTTCTCCACCTACTTGCTTGGGAATTAAATCACTGAGGAATTAGACAAATTGGTTATCTACTAGGGTTTTGGGTCTACTGTACGGGTGCTCCTCCAGCATTTTTGTATTGGGACATATTGTAGCGTGTGGTTGTTGAGCTCGAACAAGGAACTTCAATTTGTGATGGAAGGGTAACATTCTTTTTGTTAGTTCCAGAAGTCAAGAAGTCGCATTTCCTCTCTCTTTGTCTCTCCCATTTCCTTGTTTTAGAGTTCCATGAAGTCAATCCATGTGACATGAATCAGTACATTCTTGTGTAGGAGGGAAATAGCCAGATAACCCGGGGAATGGTCTAGTTTTCTGGAACTATGCGCAAAATCCAGAGCATTGTGCCAGATGCATATTCTTGGACACATGTAATCTGTTGAGAGATTTCCCCCTTTCTTTAGTTTATGTTTTCCAGCATAATGCTTATGCTTGATCTGGGGAGGTAGAAGATCTTATTGCCAACAAATTCTGGTAATAAGCACTTGCAAATGGAAGAAATATTTCCTACCCGGAAACGAGGATGAAGTTTCCTCTGAATTTCTTTTTGTAAACAAAATGACTTAGTATAAGAGAACCTGTCATATGATCTTGCATGATGCTACTGAACATTAGCATTTTGTAAAACTTGATCAGTAGGTTCCTGTTTGTAAGTCTATGTATAGAACGAGTTAATGGATTTGATTGAAACTATGCATCTCTAAGATTTGGGTGTTTTATTTTGTTATAACAGGTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAGGTATCAACCTTTTATGCTTCTCAAAGATCTCATATGGTCTTCCATTTCTAGAAATTACAATGGAATATTACTTGCTTAGGTGATTTGATAATTGGTCAATTCACCACAATGTGTTGGTAATGATGATTGCTTGAGAAGCTGAAGGTTGAATGTTCTTCCAATTGTTTCTTTGGCGGCTTCATTTTTTGACCTTTTGGAGTAATGAGAATTTAAACTTTTGCTAGAACCTAGTTATGCCCTTCCCTGTTTTTTCAAAAAAATTTGCCCTCTCTTTTGCATAAGCTGAATCAAAGAAATTAAAGCAGCTCTAGTGGATATGGAAAACCATCTTGAATGATTAGACTTTTGTAGATTTTGAATGCACATTGTGTACTATGGTATTGAGAAAGTACAAAGCCGGATGGAATGATTTTTCCCTCCATTCCTGCTAGGATGCTTCTCTTATTTTTTTTTTCTGTTCCTTTCTGTCTCAATGTACGCTTCCAAGCTTCTCAATAGTGGATATTGAGATTAAGAAACAAATTTGGAGGTTCTGCGTCTTATCAAGCTTTTCTTTCCCTGACCTTATTTTAATAGTGTTGAGTGGATGATTGGAGCGTAATATGGATTGCTGAATGAATCGTTTGCTTCCTTTGACAGGGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGCGTTAACACCCATCTTGGAGTTGGTAAGTGAGGATGATATTACACCAAGTACCTAGTAGTACGTTAAACTTTACATAATCACCTCTCTTCCTTGTATGCAGAACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAGGTTCGGCAGTTACAGATATAGTTTATGTTTGGTGCCTGTTTCTCTATTTCCATGTGCATTACTTGTTTCTTACAATTAGCATATTTGCTTGTGTTTTTTAGTCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAGGATTAGTGAGAAGAAGATGCTTACACCTATAGAGGTAGTGACTTTATGTACATTATTTATACATGCCAAATATTATCTGTCCTACAGAGAAGTACCGGGTCTTGTGAATATATCTGTCCTAAACTATGCTCTCTCATCAAACTGCATAATGACATATTCCACTGTTCTCTGTTAAACAGGTGCTTTGCAAATCCTATCCTTCAGAATTCATATCATATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGGGTAAGTTTCTGTTTCATGATAGTTTCAATATTCTGTTTCCTCCTTTATATAATCTCTTTCGCACTACAAGTATATTTCTGTAGTCTTATACGACAAAATTCTTTTTGCATGCATTGCAGGTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGAGTCTGTCTTTAATCTACTCTTGCTAAAAATTATCTACTGTTTTATTTTTGCATTCTAGAAGATGCCCTAATCTTACATTTTGTGTATTTTCAGCAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTGGTACTGTTACAAGAAACTGCATCTTCAAAGAATAAGAAATAGTAGCTTACATTCCTCGTATGATTATTTATGTTTGGGCGGGCTCATGGTGCTTGACCTTTGTCGTCAATCTAATCCATGCTTTTGACAAAATAGCCAATTATTGCAAGCAGAATAGCACTTCAAATCTCTTATTATATGTAGTTTCAGAAGACCCACTTGAAACACATAAATGTAAGTTTGCATGTGTGACCCATTCAATGGCAGTGGGAGAGATGTACAATGCTCAAGTATGTGACTAGAAGTTGCAGCTATCCTTGAGGATTTCTTAAATATGCGGAAATGGGTGCTGTCCAATTAATGATAAGAAGTGTGTCAAATCATCCCCTCTGAAAAATAAAACCCAATACGAACTATAGGTGGCTGGGGCATTTTGTTTTGTTTCTTTTTCCTCCCGTGTTTTTTTTGTTGGTTGAATGTATGTCATCATGTTACAGATTTGTAGGCTAATTTTAAGATTTGTCTGATCTCTTGTACAGTGAGGCAGGAAATCAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACGTGTCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTAC</genome_strand>
        <mrna_strand>ATTAAGCCTGACAACTTCTTAATGGGTTTAGGGCGTAAAGCAAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGTGTTAACACCCATCTTGGAGTTG..............................................................................AACAAAGCAGAAGAGATGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAG.....................................................................................................TCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAAGATTAGTGAGAAGAAGATGCTTACACCTATAGAG.................................................................................................................................................GTCCTTTGCAAATCCTATCCCTCAGAATTCATATCTTATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGG.......................................................................................................................GTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGA.............................................................................................CAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAGGAAATTAAAGATAGGTTTTCTGGTGCTGTGGAGGCG-TTTCTAGAAGGAACATGCCTGGAACTGGTTTGCAAGGGGAACATTTGAGACCTCACAGATCATCTGACGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460373" ref_strand="+" ref_description="SGN-E460373 [cPRO-30-H20]">
      <seq>gtgacattaagcctgacaacttcttaatgggtttagggcgtaaagcaaatcaggtatacatcattgactatggtcttgccaagaaatacagagatcttcagacacacaagcatataccatacagggaaaacaaaaacctcacaggaacagctcgttatgctagtgttaacacccatcttggagttgaacaaagcagaagagatgatctggagtctcttggttatgtgcttatgtattttttgagaggaagtctgccatggcaaggtctgaaagctggcaccaaaaagcagaaatatgacaagattagtgagaagaagatgcttacacctatagaggtcctttgcaaatcctatccctcagaattcatatcttattttcattattgccgatcattacggtttgatgacaagccagattactcatacctaaagaggctattccgtgaccttttcattagagagggttatcaatttgactatgtgtttgattggactatcttgaagtatccccagatcggctccagttcaagagcacgacaacctattgcaagattacctgtgaatccgggaccatccattgaaagaccagaaaagatccctgtgaggcaggaaattaaagataggttttctggtgctgtggaggcgttttctagaaggaacatgctggaactggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="64652" stop="53338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56839" g_stop="56787" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56786" i_stop="55955" i_length="832">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55954" g_stop="55884" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="124" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55883" i_stop="55245" i_length="639">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55244" g_stop="55183" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="186" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55182" i_stop="55105" i_length="78">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55104" g_stop="55041" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="250" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55040" i_stop="54940" i_length="101">
            <donor d_prob="0.382" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54939" g_stop="54855" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="335" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54854" i_stop="54710" i_length="145">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.793" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54709" g_stop="54583" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="462" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54582" i_stop="54464" i_length="119">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54463" g_stop="54390" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="536" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="54389" i_stop="54297" i_length="93">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="54296" g_stop="54233" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="600" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="54232" i_stop="53715" i_length="518">
            <donor d_prob="0.692" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53714" g_stop="53638" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="676" r_length="76" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E460373" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56839" e_stop="56787"/>
          <exon e_start="55954" e_stop="55884"/>
          <exon e_start="55244" e_stop="55183"/>
          <exon e_start="55104" e_stop="55041"/>
          <exon e_start="54939" e_stop="54855"/>
          <exon e_start="54709" e_stop="54583"/>
          <exon e_start="54463" e_stop="54390"/>
          <exon e_start="54296" e_stop="54233"/>
          <exon e_start="53714" e_stop="53638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATATTAAGCCCGACAACTTTTTAATGGGTTTAGGGCGTAAAGCAAATCAGGTGTGTACTTCATCATATGTTCTCGAAGTGTAGATGTAAATGCCCTATACATTTGCACTTGATATTTTCGGAAAGTTCTCCACCTACTTGCTTGGGAATTAAATCACTGAGGAATTAGACAAATTGGTTATCTACTAGGGTTTTGGGTCTACTGTACGGGTGCTCCTCCAGCATTTTTGTATTGGGACATATTGTAGCGTGTGGTTGTTGAGCTCGAACAAGGAACTTCAATTTGTGATGGAAGGGTAACATTCTTTTTGTTAGTTCCAGAAGTCAAGAAGTCGCATTTCCTCTCTCTTTGTCTCTCCCATTTCCTTGTTTTAGAGTTCCATGAAGTCAATCCATGTGACATGAATCAGTACATTCTTGTGTAGGAGGGAAATAGCCAGATAACCCGGGGAATGGTCTAGTTTTCTGGAACTATGCGCAAAATCCAGAGCATTGTGCCAGATGCATATTCTTGGACACATGTAATCTGTTGAGAGATTTCCCCCTTTCTTTAGTTTATGTTTTCCAGCATAATGCTTATGCTTGATCTGGGGAGGTAGAAGATCTTATTGCCAACAAATTCTGGTAATAAGCACTTGCAAATGGAAGAAATATTTCCTACCCGGAAACGAGGATGAAGTTTCCTCTGAATTTCTTTTTGTAAACAAAATGACTTAGTATAAGAGAACCTGTCATATGATCTTGCATGATGCTACTGAACATTAGCATTTTGTAAAACTTGATCAGTAGGTTCCTGTTTGTAAGTCTATGTATAGAACGAGTTAATGGATTTGATTGAAACTATGCATCTCTAAGATTTGGGTGTTTTATTTTGTTATAACAGGTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAGGTATCAACCTTTTATGCTTCTCAAAGATCTCATATGGTCTTCCATTTCTAGAAATTACAATGGAATATTACTTGCTTAGGTGATTTGATAATTGGTCAATTCACCACAATGTGTTGGTAATGATGATTGCTTGAGAAGCTGAAGGTTGAATGTTCTTCCAATTGTTTCTTTGGCGGCTTCATTTTTTGACCTTTTGGAGTAATGAGAATTTAAACTTTTGCTAGAACCTAGTTATGCCCTTCCCTGTTTTTTCAAAAAAATTTGCCCTCTCTTTTGCATAAGCTGAATCAAAGAAATTAAAGCAGCTCTAGTGGATATGGAAAACCATCTTGAATGATTAGACTTTTGTAGATTTTGAATGCACATTGTGTACTATGGTATTGAGAAAGTACAAAGCCGGATGGAATGATTTTTCCCTCCATTCCTGCTAGGATGCTTCTCTTATTTTTTTTTTCTGTTCCTTTCTGTCTCAATGTACGCTTCCAAGCTTCTCAATAGTGGATATTGAGATTAAGAAACAAATTTGGAGGTTCTGCGTCTTATCAAGCTTTTCTTTCCCTGACCTTATTTTAATAGTGTTGAGTGGATGATTGGAGCGTAATATGGATTGCTGAATGAATCGTTTGCTTCCTTTGACAGGGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGCGTTAACACCCATCTTGGAGTTGGTAAGTGAGGATGATATTACACCAAGTACCTAGTAGTACGTTAAACTTTACATAATCACCTCTCTTCCTTGTATGCAGAACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAGGTTCGGCAGTTACAGATATAGTTTATGTTTGGTGCCTGTTTCTCTATTTCCATGTGCATTACTTGTTTCTTACAATTAGCATATTTGCTTGTGTTTTTTAGTCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAGGATTAGTGAGAAGAAGATGCTTACACCTATAGAGGTAGTGACTTTATGTACATTATTTATACATGCCAAATATTATCTGTCCTACAGAGAAGTACCGGGTCTTGTGAATATATCTGTCCTAAACTATGCTCTCTCATCAAACTGCATAATGACATATTCCACTGTTCTCTGTTAAACAGGTGCTTTGCAAATCCTATCCTTCAGAATTCATATCATATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGGGTAAGTTTCTGTTTCATGATAGTTTCAATATTCTGTTTCCTCCTTTATATAATCTCTTTCGCACTACAAGTATATTTCTGTAGTCTTATACGACAAAATTCTTTTTGCATGCATTGCAGGTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGAGTCTGTCTTTAATCTACTCTTGCTAAAAATTATCTACTGTTTTATTTTTGCATTCTAGAAGATGCCCTAATCTTACATTTTGTGTATTTTCAGCAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTGGTACTGTTACAAGAAACTGCATCTTCAAAGAATAAGAAATAGTAGCTTACATTCCTCGTATGATTATTTATGTTTGGGCGGGCTCATGGTGCTTGACCTTTGTCGTCAATCTAATCCATGCTTTTGACAAAATAGCCAATTATTGCAAGCAGAATAGCACTTCAAATCTCTTATTATATGTAGTTTCAGAAGACCCACTTGAAACACATAAATGTAAGTTTGCATGTGTGACCCATTCAATGGCAGTGGGAGAGATGTACAATGCTCAAGTATGTGACTAGAAGTTGCAGCTATCCTTGAGGATTTCTTAAATATGCGGAAATGGGTGCTGTCCAATTAATGATAAGAAGTGTGTCAAATCATCCCCTCTGAAAAATAAAACCCAATACGAACTATAGGTGGCTGGGGCATTTTGTTTTGTTTCTTTTTCCTCCCGTGTTTTTTTTGTTGGTTGAATGTATGTCATCATGTTACAGATTTGTAGGCTAATTTTAAGATTTGTCTGATCTCTTGTACAGTGAGGCAGGAAATCAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACGTGTCTGGAACTGGTTTG</genome_strand>
        <mrna_strand>GTGACATTAAGCCTGACAACTTCTTAATGGGTTTAGGGCGTAAAGCAAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGTGTTAACACCCATCTTGGAGTTG..............................................................................AACAAAGCAGAAGAGATGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAG.....................................................................................................TCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAAGATTAGTGAGAAGAAGATGCTTACACCTATAGAG.................................................................................................................................................GTCCTTTGCAAATCCTATCCCTCAGAATTCATATCTTATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGG.......................................................................................................................GTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGA.............................................................................................CAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAGGAAATTAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACATG-CTGGAACTGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339636" ref_strand="+" ref_description="SGN-E339636 [cTOE-16-N14]">
      <seq>caaactggagaagaagttgctgtgaagctggaatcaactaaaaccaagcaccctcagcttcattatgaatcaaagctgtatatgcttctacaaggaggaactggaattccacacctcaagtggtttggcgttgaaggtgaatacaatgccatggttatcgaccttcttggaccaagtttggaagacttgtttaactattgcaataggaggttcactttaaagacagctttaatgctggcagatcaactgattaatagggttgaatatatgcactcaagaggatttcttcaccgtgatattaagcccgacaacttcttaatgggtttagggcgtaaagcaaatcaggtatacatcattgactatggtcttgccaagaaatacagagatcttcagacacacaagcatataccatacagggaaaacaaaaacctcacaggaacagctcgttatgctagcgttaacacccatcttggagttgaacaaagcagaagagacgatctggagtctcttggttatgtgcttatgtattttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="65723" stop="54748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65423" g_stop="65394" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65393" i_stop="64790" i_length="604">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64789" g_stop="64720" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64719" i_stop="64621" i_length="99">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64620" g_stop="64472" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="249" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64471" i_stop="64396" i_length="76">
            <donor d_prob="0.581" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64395" g_stop="64300" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="345" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64299" i_stop="63207" i_length="1093">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63206" g_stop="63136" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="416" r_length="71" r_score="0.887"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63135" i_stop="62496" i_length="640">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62495" g_stop="62434" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="478" r_length="62" r_score="0.887"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62433" i_stop="62358" i_length="76">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62357" g_stop="62301" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="535" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E339636" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65423" e_stop="65394"/>
          <exon e_start="64789" e_stop="64720"/>
          <exon e_start="64620" e_stop="64472"/>
          <exon e_start="64395" e_stop="64300"/>
          <exon e_start="63206" e_stop="63136"/>
          <exon e_start="62495" e_stop="62434"/>
          <exon e_start="62357" e_stop="62301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGAAGAAGAAGTTGCTGTGAAGCTGGTGAGTATGTTGATTAGCTGAACGCTGAAGCTGGAAGTTCACCACATAAACATGGTGTCAATTGTGTTAGGATTTAGCCTTTCACTGGAATTGAATAAAATTTTAAAAGTTGTTTTTTCGGAAGCTGAAAATTCACTCCACAATTTGCTGTCAATTGTCTTAAGATTGAGCCTTTCTCTAAGTAAACTTAGCAACCTGATAAAGTTGAGAAGAATGACCATTTCACTGGAAGATGAGAGGATTATTCTTGAATCATAAGTTTTCATGATATAAAAATTAAAATATGATAGATGACCATTGCTATTTTGGCTGAATGTTCAAATGACATTATTTATTTGGCCCTTTTCTCGGTTCTAGTTTGTTGGTGTGCATTTGCTGGATATAGCTTCTATTTCTGAAGAGTCTTGAATAATTTTGCTTAATTATTCAAGATCAGCATATTTGTTTGGTAGGGGACCGTATTGTGATATATTTATGGACTTCATTTGTGGTTTGCTTCTCACCAGTTGTCCGGGGTGTGTTTCAAGTGCTATGTTTAATATTATGGTTTCTTCTTTGGTACATTAGCTTTGCTGTTCCCAAAATCTAAATTTTTGGTTTGCAGGAATCAACTAAAACAGAACACCCTCACCTTCATTATGAATCAAAGTTGTATAGGCTTCTACAAGGAGGAAGTAAGTGATAGCTTCTACCCATGAATTTCGATGACTCTTATATTTTCTTGCTAAAGTGTTTTTTTAAATTTTTTTTTTTTATCATTTTCATATTTCAAGCTGGGATTCCAAACGTCAGGTGGTTTGGCGTTGAAGGTGAATACAATGCCATGGTTATTGACCTTCTTGGGCCAAGTTTGGAAGACTTGTTTAACTATTGCAATAGGAGGTTCACTTTAAAGACAGTTTTAATGCTGGCAGATCAATTGGTAAATAGCCAAAATTATATGCTGATCAAAGCATAATAATTGCAGCTGGTTGCCTGATACTTATTCTCTGATGCAGATTAATAGGGTTGAATAAATGCACTCAAGAGGATTTCTTCACCGTGACATTAAGCCCGAAAACTTCTTAATGGGTATAGGGCGTAAAGCAAATCAGGTGTGCACTTCATCATATGTTCTCTAAGTGTACATGTATGTCTATGGTTGATAACAAGGTTATGTGCTCCTATTATTTTCCCTAGATATTCTGGAAAGCTCTCCACCTACTTGTTTAGGAACTAAATCACCGACGAACTAGACAAGTTGGTTATCTATTAGGGTTTAGGGTTACAAGTGCTACTCCAGCATTTGTGGAGCTGGAAATATTGTAGCCTGCTTGTTAAGCTTGAACTTTAATTTGAGATGGAAGGGTTACATTCTTTTTTTGGATATTCTCTAATTTCACTCAAGAACATGTACTTCTTATCTTTTTCTCTCGTGTTCCTCTCTGCCATTCTCTTCTCTTAGAGCTCAATGAAGTTGATCCTTGTGATATGAACCTTTGCATTCTTGTCCAAGAAGGCTCTAGCTAACTAACCAGGTGTGCATTTCTTTCAGTTTCCTGGAACAGAGCTCAAAACTCTGTGCATTGTGCAATAGCATATTCTTGGAAATTTCTTCTTTTAAGAACTGGTACTATTGAAAAATTTGTAAAAATTCTTGGACACATTTAATATGTTGAAAGATTCGCCTCTTTCTTTAGTTTATGTTTTCCAGCATAATGCTTATGTTTGAGCTTGGGATGCCAACAAACAACAACAATATACCCAGTAATTGCGAACAAAATTCTGGTAATTAGGCACTTGCAAGCTATGTTGCTCGGACTCTCCGAAAATGGTGCCGCACCCGGGTCGGATCCTTCAAAATGCGCTACTTTTGAAGGATCTGATATGCACCAGTCGGCATTCTTGAAAAGTCCGAGCGACATAGCTTGCAAGTGGAAGAAATTTTTCCTACTGGAGAGGAGGATAAAGTTCCTCCAATCTTGAATTTGTAAACAAACTAACCTAGCCAGAGAACCTGTCATCCTATCTTGTAGTATGCTACTAAACATGAACATTTTGTAATTACTTGATCAGCAGCTTCCTGTCTCTGTAGTACCTTTGTAAATCTACATTAGAACGAGTTTATGAATCTGATGAAAAATAATTCCCATGACATAACCTATGCATCTCTAAGTCAGTTTTGAGCGTTCTATTTTGTTAAAGCAGGTATACATGATTGACTATGCTCTTGCCAACAAATACAGAGATCATGAGACACATGAGCATATACCATTCAGGTATCAACTTCTTCTGTTCCTTAAAGATCTCATATGTCTTCCATTTCTAGAAATTAAAGTGGAATATTACTTGCTAAGGTGATTTAATAATTGGTCAATTCAGTACAATGTGTTAGTAACGACGATTGCTTGAGAAGCTGAAGGTTGAATCTTTTTCCAATTGTTTCTTTGGCGGCTTCGTTTTTTGACCTTTTGGGTTAATGAGGAGTTAAACTTTTGCTCGAACCTAGTTATGTCCTTCCCTTGTTGTTAATATTTGTTTCAAAGATCTCTTTTGCATAAGCTTAACCAAAGAAATTAAAGCTGCCCTTATTGATACAGAAAACCATCTTGTTTGATTAGATCTGTGTAGATTTTGAATGCACATGGTGTACTATGTTATTGAGAAAATAAAAAGGTGGATGAAGAGGTACTCCATTCCTGCTAAGATGCTTCTCTTATTTTGTTCTTTTCCTTTCTGTCTCTTCTATATATTATTTCAAGCTTCTCAATAGTAGATATTGAAATCAAGAAAGAAATTTGGAGGTTCTGCTTTCTTTTTAAGCTTTTCTTTCCTTGACCTTATTTTTAATAGAGTTTAGAGTGGATGGTTGGAGTGTAATATGGATTATTGAACGACTTATTTTGCTTCCTTTGACAGGGAAAACAAAAGGCCCACAGGAACAGCTCGTTATTCTAGTGTTAGCACCCATCTTGGATTTGGTAAGTGAGGATGATATTACCTGAAGCACCTAATATATTTTAAACTTTACATATTACTTCTCTTCCTTGTATGCAGAACAAAGCAGAAGAGACGATCTGGAGTGTCTTGGTTATGTGCTTATGTATTTTTTGA</genome_strand>
        <mrna_strand>CAAACTGGAGAAGAAGTTGCTGTGAAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAACTAAAACCAAGCACCCTCAGCTTCATTATGAATCAAAGCTGTATATGCTTCTACAAGGAGGAA...................................................................................................CTGGAATTCCACACCTCAAGTGGTTTGGCGTTGAAGGTGAATACAATGCCATGGTTATCGACCTTCTTGGACCAAGTTTGGAAGACTTGTTTAACTATTGCAATAGGAGGTTCACTTTAAAGACAGCTTTAATGCTGGCAGATCAACTG............................................................................ATTAATAGGGTTGAATATATGCACTCAAGAGGATTTCTTCACCGTGATATTAAGCCCGACAACTTCTTAATGGGTTTAGGGCGTAAAGCAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGCGTTAACACCCATCTTGGAGTTG............................................................................AACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438839" ref_strand="+" ref_description="SGN-E438839 [cSTA-9-J16]">
      <seq>ggatcatgtggttggtggcacgtataaattgggtcggaaggtcggtaaaggatattttgcggaactttatttggggataaatgtgcaaactgaagaagaagttgctgtgaagctggaatcaactaaaacagaacaccctcagcttcattatgaatcaaagctgtataggcttctacaaggaggaactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="65907" stop="64418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65607" g_stop="65537" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.831"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65536" i_stop="65435" i_length="102">
            <donor d_prob="0.581" d_score="0.74"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65434" g_stop="65394" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="115" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65393" i_stop="64790" i_length="604">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64789" g_stop="64720" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="185" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64719" i_stop="64621" i_length="99">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64620" g_stop="64616" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="190" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E438839" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>187</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65607" e_stop="65537"/>
          <exon e_start="65434" e_stop="65394"/>
          <exon e_start="64789" e_stop="64720"/>
          <exon e_start="64620" e_stop="64616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCATGTGGTTGGTGGCACGTATAAACTGGGTCTGAAGATTGGTAAAGGATATTTAGCGG-A--TTATCTGGGTAATCTCCATGCGTATTTCTTGATTGTTGTTAATTTCAATTGTAGCTCAACTTTTCTGTTATGGGGTTTGAGTTAACCTTGAGTTTTGTTTTTCGTATCAGGGGTAAATGTGCAAACTGAAGAAGAAGTTGCTGTGAAGCTGGTGAGTATGTTGATTAGCTGAACGCTGAAGCTGGAAGTTCACCACATAAACATGGTGTCAATTGTGTTAGGATTTAGCCTTTCACTGGAATTGAATAAAATTTTAAAAGTTGTTTTTTCGGAAGCTGAAAATTCACTCCACAATTTGCTGTCAATTGTCTTAAGATTGAGCCTTTCTCTAAGTAAACTTAGCAACCTGATAAAGTTGAGAAGAATGACCATTTCACTGGAAGATGAGAGGATTATTCTTGAATCATAAGTTTTCATGATATAAAAATTAAAATATGATAGATGACCATTGCTATTTTGGCTGAATGTTCAAATGACATTATTTATTTGGCCCTTTTCTCGGTTCTAGTTTGTTGGTGTGCATTTGCTGGATATAGCTTCTATTTCTGAAGAGTCTTGAATAATTTTGCTTAATTATTCAAGATCAGCATATTTGTTTGGTAGGGGACCGTATTGTGATATATTTATGGACTTCATTTGTGGTTTGCTTCTCACCAGTTGTCCGGGGTGTGTTTCAAGTGCTATGTTTAATATTATGGTTTCTTCTTTGGTACATTAGCTTTGCTGTTCCCAAAATCTAAATTTTTGGTTTGCAGGAATCAACTAAAACAGAACACCCTCACCTTCATTATGAATCAAAGTTGTATAGGCTTCTACAAGGAGGAAGTAAGTGATAGCTTCTACCCATGAATTTCGATGACTCTTATATTTTCTTGCTAAAGTGTTTTTTTAAATTTTTTTTTTTTATCATTTTCATATTTCAAGCTGGG</genome_strand>
        <mrna_strand>GGATCATGTGGTTGGTGGCACGTATAAATTGGGTCGGAAGGTCGGTAAAGGATATTTTGCGGAACTTTATTTGG......................................................................................................GGATAAATGTGCAAACTGAAGAAGAAGTTGCTGTGAAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAACTAAAACAGAACACCCTCAGCTTCATTATGAATCAAAGCTGTATAGGCTTCTACAAGGAGGAA...................................................................................................CTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746283" ref_strand="+" ref_description="SGN-E746283 [GI|47104771]">
      <seq>ctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattggaaagggtgcatttggggaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggccaggttgaacatgttaaagccgaaaggaatctgcttgctgaagtggagagcaattgcattgttaagctatattgctccttccaagatgaggagtatctttacctaataatggaatatcttcctggtggagatatgatgactttgctgatgcgcaaggatactttaacagaagatgaggccaggttttatgtgggggagaccgtccttgctatagaatctatccataaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccagcccctccaaggcgcactcaacaggagcaactattgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatggctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccctcgtcaagtcaatagctttcgttgttgtgtttttataacctaggtgtattccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgcaactgccttggttcatagtttgcgcttgttttgtgtaaattgtttcttggaagtacatatatcattctttttgttgctagtttgtaattttgcttactcactaagctgcagaaacttgtgaccttgttcttgtaatctctttcaactttgggtttatttatttcaatagccctattctctatagatgaatgttcttgctggttttttctaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="77925" stop="66537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77625" g_stop="77409" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="596" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="74897" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="771" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74301" g_stop="74218" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="855" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74132" g_stop="73891" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="1097" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73765" g_stop="73546" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1098" r_stop="1317" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1318" r_stop="1397" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1398" r_stop="1482" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1483" r_stop="1614" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1615" r_stop="1728" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1729" r_stop="1776" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1777" r_stop="1861" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="69753" g_stop="69697" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1862" r_stop="1918" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68888" g_stop="68402" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1919" r_stop="2405" r_length="487" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="68401" i_stop="67760" i_length="642">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="67759" g_stop="67739" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="2406" r_stop="2426" r_length="21" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E746283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77625" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="74897"/>
          <exon e_start="74301" e_stop="74218"/>
          <exon e_start="74132" e_stop="73891"/>
          <exon e_start="73765" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69697"/>
          <exon e_start="68888" e_stop="68402"/>
          <exon e_start="67759" e_stop="67739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTATGGATCTTTGGTTCTCAACTTTCATTCTGTAATTTCTGTGCATTTGCTTTCTTTCAACAAAGATAATAGAAGAATGGAGAACAAGAATGTCTCTGGGAATATAACAGGTGTCTCGTGGAATTAGTCGAGGTCTAAATTGCAGTGATCCCAAACGGGAATCTAACGATTTCATTCACTTCACCAACAAAAGGCGAGGTAGCTTGGCGTCAGTAAAGACAAAACAAGACCCGAGGGTTTCTTTTACTAATATAGAGCATACCAATCTCAGAAACTAAACTGGTCAATGCGAGCTTGATACGCGAACACTAAAGAGAGAACCGGGGCAAATTTGCTTCGGTTAGGATTCGCCTTTGGGAATAATTAAACACTATGGTAAGTATTTATCGAAAACAATCTTTCTACCCTGTAAAGTTTGTGTATATCCTATCCTCGTCAAATCCCACCTGCGAGACTATACTTATCGACCTACATTTCAATAATTAGTGAGCATATATTATAATTGTGCAAAATCTAAAAGAAATAATATAGCACCAACAATCCCTACTTGTAATCACACTTCCAATTCCCAGCTTATGTAAATAATGAATCAATTACAACAAAAACAAAAAAGTTTTGTCCAAGTATCATTCTTATAATACAAAATAAAAGAAGAAGAAAAA</genome_strand>
        <mrna_strand>CTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG.....................................................................................GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG....................................................................................................CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341276" ref_strand="-" ref_description="SGN-E341276 [cTOE-22-D21]">
      <seq>aactatagctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccctcgtcaagtcaatagctttcgttgttgtgtttttataacctaggtgtattccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgcaactgccttggttcatagtttgcgcttgttttgtgtaaattgtttcttggaagtacatatatcattctttttgttgctagtttgtaattttgcttactcactaagctgcagaaacttgtgaccttgttcttgtaatctctttcaactttgggtttatttatttcaatagccctattctctatagatgaatgttcttgctggttttttctaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="69095" stop="57239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68795" g_stop="68399" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68398" i_stop="68336" i_length="63">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68335" g_stop="68312" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="421" r_length="24" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E341276" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341276" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68795" e_stop="68399"/>
          <exon e_start="68335" e_stop="68312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTATGGATCTTTGGTTCTCAACTTTCATTCTGTAATTTCTGTGCATTTGCTTTCTTTCAACAAAGATAATAGAAGAATGGAGAACAAGA</genome_strand>
        <mrna_strand>AACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTAAA...............................................................AAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716338" ref_strand="+" ref_description="SGN-E716338 [FB16DB03]">
      <seq>gaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccctcgtcaagtcaatagctttcgttgttgtgtttttataacctaggtgtattccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgcaactgccttggttcatagtttgcgcttgttttgtgtaaattgtttcttggaagtacatatatcattctttttgttgctagtttgtaattttgcttactcactaagctgcagaaacttgtgaccttgttcttgtaatctctttcaactttgggtttatttatttcaatagccctattctctatagatgaatgttcttgctggttttttctattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="70051" stop="68098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69751" g_stop="69697" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68888" g_stop="68398" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="546" r_length="491" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68397" i_stop="68336" i_length="62">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68335" g_stop="68324" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="558" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E716338" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69751" e_stop="69697"/>
          <exon e_start="68888" e_stop="68398"/>
          <exon e_start="68335" e_stop="68324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTATGGATCTTTGGTTCTCAACTTTCATTCTGTAATTTCTGTGCATTTGCTTTCTTTCAACAAAGATAATAGAAGAA</genome_strand>
        <mrna_strand>GAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTA..............................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394929" ref_strand="+" ref_description="SGN-E394929 [TUS-43-I15](-)">
      <seq>acttggaatcttcaaatcaggctgaacaagttttgctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccctcgtcaagtcaatagctttcgttgttgtgtttttataacctaggtgtattccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgcaactgccttggttcatagtttgcgcttgttttgtgtaaattgtttcttggaagtacatatatcattctttttgttgctagtttgtaattttgcttactcactaagctgcagaaacttgtgaccttgttcttgtaatctctttcaactttgggtttatttatttcaatagccctattctctatagatgaatgttcttgctggttttttctattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="69122" stop="68098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68822" g_stop="68398" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68397" i_stop="68336" i_length="62">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68335" g_stop="68327" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="434" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E394929" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68822" e_stop="68398"/>
          <exon e_start="68335" e_stop="68327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTATGGATCTTTGGTTCTCAACTTTCATTCTGTAATTTCTGTGCATTTGCTTTCTTTCAACAAAGATAATAGAA</genome_strand>
        <mrna_strand>ACTTGGAATCTTCAAATCAGGCTGAACAAGTTTTGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTA..............................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407005" ref_strand="+" ref_description="SGN-E407005 [PPI-5-P7]">
      <seq>atcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaaattttgagaagtttgaagagggcgacaatcaaattccaacagcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttataaaaactttgagattgtgaatgataatgatgtttctcaaatggctgaattgaagaagaagagcaacaaagctaagaggccaactgtgaagtcacttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatctcttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaatactaatctgttaataacttcatgaccatagccaaaccaaagcaaacaggggcaacacaaacccctcgtcaagtcaatagctttcgttgttgtgttttttaacctaggtgtgttccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgtaactgccttggttcatagtttgtgcttgttttgtgtaaattatttcttggaagtacatatatcattctttttgttgctagtttgtaattntgcttactctctaagctgcagaaacttgtgaccttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="71244" stop="68183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70944" g_stop="70871" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="123" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="208" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69753" g_stop="69697" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="265" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68888" g_stop="68480" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="673" r_length="408" r_score="0.961"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68479" i_stop="68336" i_length="144">
            <donor d_prob="0.396" d_score="0.90"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68335" g_stop="68329" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="680" r_length="7" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E407005" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70944" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69697"/>
          <exon e_start="68888" e_stop="68480"/>
          <exon e_start="68335" e_stop="68329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAG-AATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTATGGATCTTTGGTTCTCAACTTTCATTCTGTAATTTCTGTGCATTTGCTTTCTTTCAACAAAGATAATAG</genome_strand>
        <mrna_strand>ATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACAGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTATAAAAACTTTGAGATTGTGAATGATAATGATGTTTCTCAAATGG....................................................................................................CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCAACTGTGAAGTCACTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTCTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAATACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGCAAACAGGGGCAACACAAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTT-TAACCTAGGTGTGTTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGTAACTGCCTTGGTTCATAGTTTGTGCTTGTTTTGTGTAAATTATTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTNTGCTTACTCTCTAAGCTGCAGAAACTTGTGACCTTGTTAAA................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419406" ref_strand="+" ref_description="SGN-E419406 [STM-29-F17]">
      <seq>gaaaaaacccgcaagtaccttcatctttagagaatggggctattgaaataaagaaacccaaagttgaagagattacaagaagaaggtcacaagtttctgcagcttagagagtaagcaaaattacaaactagcaacaaaaagaatgatatatgtacttccaagaaataatttacacaaaacaagcgcaaactatgaaccaaggcagttacaccagaatttgcaaaactgcctttggtcgtgaatactttacttacactcggaatacacctaggttaaaaaacacaacaacgaaagctattgacttgacgaggggtttggcgttgcccctgtttactttggtttggctatggtcatgaaattattaacaaattagtattggatgtagctatagttgttcagcctgctttgaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="68103" stop="69115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68403" g_stop="68815" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E419406" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68403" e_stop="68815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAACCAGCAAGAACATTCATCTATAGAGAATAGGGCTATTGAAATAAATAAACCCAAAGTTGAAAGAGATTACAAGAACAAGGTCACAAGTTTCTGCAGCTTAGTGAGTAAGCAAAATTACAAACTAGCAACAAAAAGAATGATATATGTACTTCCAAGAAACAATTTACACAAAACAAGCGCAAACTATGAACCAAGGCAGTTGCACCAGAATTTGCAAAACTGCC-TTCGTCGTGAATACTTTACTTACACTTGGAATACACCTAGGTTATAAAAACACAACAACGAAAGCTATTGACTTGACGAGGGG-TTGGCGCTGCCCCTGTTTACTTTGGTTTGGCTATGGTCATGAAGTTATTAACAGATTAGTTTTGGATGTAGCTATAGTTGTTCAGCCTGCTTTGAGGAT</genome_strand>
        <mrna_strand>GAAAAAACCCGCAAGTACCTTCATCTTTAGAGAATGGGGCTATTGAAATAAAGAAACCCAAAGTTG-AAGAGATTACAAGAAGAAGGTCACAAGTTTCTGCAGCTTAGAGAGTAAGCAAAATTACAAACTAGCAACAAAAAGAATGATATATGTACTTCCAAGAAATAATTTACACAAAACAAGCGCAAACTATGAACCAAGGCAGTTACACCAGAATTTGCAAAACTGCCTTTGGTCGTGAATACTTTACTTACACTCGGAATACACCTAGGTTA-AAAAACACAACAACGAAAGCTATTGACTTGACGAGGGGTTTGGCGTTGCCCCTGTTTACTTTGGTTTGGCTATGGTCATGAAATTATTAACAAATTAGTATTGGATGTAGCTATAGTTGTTCAGCCTGCTTTGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609884" ref_strand="+" ref_description="SGN-E609884 [46376]">
      <seq>ccgactctcaacaggctcatggaagtttccttaatctcttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaatactaatctgttaataacttcatgaccatagccaaaccaaagcaaacaggggcaacacaaacccctcgtcaagtcaatagctttcgttgttgtgttttttaacctaggtgtgttccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgtaactgccttggttcatagtttgtgcttgttttgtgtaaattatttcttggaagtacatatatcattctttttgttgctagtttgtaattttgcttactctctaagctgcagaaacttgtgaccttgttcttgtaatctcttcaaatttgggtttatttctttcaatagccccattctctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="69170" stop="68128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68870" g_stop="68428" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E609884" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68870" e_stop="68428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATA</genome_strand>
        <mrna_strand>CCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTCTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAATACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGCAAACAGGGGCAACACAAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTT-TAACCTAGGTGTGTTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGTAACTGCCTTGGTTCATAGTTTGTGCTTGTTTTGTGTAAATTATTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCTCTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTC-TTCAAATTTGGGTTTATTTCTTTCAATAGCCCCATTCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263975" ref_strand="+" ref_description="SGN-E263975 [cLEG-64-D17]">
      <seq>tatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatgggtacttattctgtccttgcagtagattataatcattcgatttatcttgtttgtctttttcagtttgtgtttgttttgaaatgtttatttctgtttttcagctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72776" stop="68412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72476" g_stop="72414" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="195" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="309" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="357" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69938" g_stop="69697" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="599" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68888" g_stop="68712" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="776" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E263975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72476" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69697"/>
          <exon e_start="68888" e_stop="68712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCT</genome_strand>
        <mrna_strand>TATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249978" ref_strand="+" ref_description="SGN-E249978 [cLEG-4-K10]">
      <seq>acaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatggctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaaaactaatctgttaataacttcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="71055" stop="68452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70755" g_stop="70712" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="129" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69753" g_stop="69697" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="186" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68888" g_stop="68752" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="323" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E249978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70755" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69697"/>
          <exon e_start="68888" e_stop="68752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGAC</genome_strand>
        <mrna_strand>ACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG....................................................................................................CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201994" ref_strand="+" ref_description="SGN-E201994 [cLEC-7-M6]">
      <seq>ctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatggctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="71454" stop="68516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71154" g_stop="71072" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="197" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="245" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="330" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69753" g_stop="69697" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="387" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68888" g_stop="68816" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="460" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E201994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71154" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69697"/>
          <exon e_start="68888" e_stop="68816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGA</genome_strand>
        <mrna_strand>CTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG....................................................................................................CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253780" ref_strand="+" ref_description="SGN-E253780 [cLEG-32-D15]">
      <seq>tatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatgggtacttattctgtccttgcagtagattataatcattcgatttatcttgtttgtctttttcagtttgtgtttgttttgaaatgtttatttctgtttttcagctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72776" stop="68530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72476" g_stop="72414" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="195" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="309" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="357" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69938" g_stop="69697" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="599" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68888" g_stop="68830" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="658" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E253780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72476" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69697"/>
          <exon e_start="68888" e_stop="68830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTA</genome_strand>
        <mrna_strand>TATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301447" ref_strand="+" ref_description="SGN-E301447 [cLEX-8-O22]">
      <seq>gtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatggctgaattgaagaagaagagcaacaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72798" stop="69426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="217" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="331" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="379" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="464" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69753" g_stop="69726" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="492" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E301447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGC</genome_strand>
        <mrna_strand>GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG....................................................................................................CTGAATTGAAGAAGAAGAGCAACAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469650" ref_strand="+" ref_description="SGN-E469650 [cSTB-12-L22]">
      <seq>ctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaagctcttgtgtaatgtagagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggcgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaacagcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactctatgggttacacttataaaaactttgagattgtgaatgataatgatgtttctcacatggctgaattgaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72733" stop="69548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72433" g_stop="72414" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="152" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="266" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="314" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.945" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="399" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69753" g_stop="69739" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="414" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E469650" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72433" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGA</genome_strand>
        <mrna_strand>CTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAGCTCTTGTGTAATGTAGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGCGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACAGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTCTATGGGTTACACTTATAAAAACTTTGAGATTGTGAATGATAATGATGTTTCTCACATGG....................................................................................................CTGAATTGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273541" ref_strand="+" ref_description="SGN-E273541 [cLEN-6-B23]">
      <seq>ttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgctctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72958" stop="70410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72658" g_stop="72581" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="163" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="295" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="409" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="457" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E273541" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72658" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG</genome_strand>
        <mrna_strand>TTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGCTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736589" ref_strand="+" ref_description="SGN-E736589 [LC06BD12]">
      <seq>gaatctgcttgctgaagtggagagcaattgcattgttaagctatattgctccttccaagatgaggagtatctttacctaataatggaatatcttcctggtggagatatgatgactttgctgatgcgcaaggatactttaacagaagatgaggccaggttttatgtgggggagaccgtccttgctatagaatctatccataaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccagcccctccaaggcgcactcaacaggagcaactattgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="74409" stop="70594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74109" g_stop="73891" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73765" g_stop="73546" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="439" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="519" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="604" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="736" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70984" g_stop="70894" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="827" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E736589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74109" e_stop="73891"/>
          <exon e_start="73765" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTC</genome_strand>
        <mrna_strand>GAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485100" ref_strand="+" ref_description="SGN-E485100 [cSTE-16-F7]">
      <seq>aaggatttcacagcggcaaataagttaagtggcgctcttctaagcgacggacgcccagcccctccaaggcgcactcaacaggagcaactgttgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtgggatacccaccattctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaagctcttgtgtaatgtagagcagagacttgggaccagaggtgctgatgaaataaaggctcacccgtggttcaaaggcgttgaatgggataaactttatcaaatgaaagctgcatttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="73965" stop="70621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73665" g_stop="73546" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="200" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="285" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="417" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70984" g_stop="70921" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="481" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E485100" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73665" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTC</genome_strand>
        <mrna_strand>AAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGACGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTGTTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGATACCCACCATTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAGCTCTTGTGTAATGTAGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCGTGGTTCAAAGGCGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574539" ref_strand="+" ref_description="SGN-E574539 [34022]">
      <seq>gaagatgaggccaggttttatgtgggggagaccgtccttttatagaatctatccagtaaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcaggtaatcttcaggaaaaggatttcacagcggccaataagttaagtggcgctcttctaagcgacggacgcccaggccctccaatgcgcactcaacaggagcaactgttgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtgggatacccaccattctattctgatgaacctatgtccagctgtagaaagatagtaaattggcggactcatcttagatttcctgaagaggccaaactgtctccagaagcaaaagatctcatatgtaagctcttgtgtaatgtagagcagagacttgggaccagaggtgctgctgaaatacaggctcacccatggttcaaagcgttgaatggataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="74267" stop="70650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73967" g_stop="73891" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73765" g_stop="73546" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="298" r_length="221" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="378" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="463" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="595" r_length="132" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="0.94"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70984" g_stop="70949" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="629" r_length="34" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E574539" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73967" e_stop="73891"/>
          <exon e_start="73765" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCA-TAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCA-GTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAA</genome_strand>
        <mrna_strand>GAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTT-TTATAGAATCTATCCAGTAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGGTAATCTTCAGGAAAAGGATTTCACAGCGGCCAATAAGTTAAGTGGCGCTCTTCTAAGCGACGGACGCCCAGGCCCTCCAATGCGCACTCAACAGGAGCAACTGTTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGATACCCACCATTCTATTCTGATGAACCTATGTCCAGCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAGATTTCCTGAAGAGGCCAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAGCTCTTGTGTAATGTAGAGCAGAGACTTGGGACCAGAGGTGCTGCTGAAATACAG.......................................................................................GCTCACCCATGGTTCAAA-GCGTTGAAT-GGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270307" ref_strand="+" ref_description="SGN-E270307 [cLEM-1-D24]">
      <seq>catgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccagcccctccaaggcgcactcaacaggagcaactattgcattggcataagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaagctcacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="74023" stop="70768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73723" g_stop="73546" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="258" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="343" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="475" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70984" g_stop="70975" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="485" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E270307" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73723" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCAT</genome_strand>
        <mrna_strand>CATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCATAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAA.......................................................................................GCTCACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203708" ref_strand="+" ref_description="SGN-E203708 [cLEC-15-N14]">
      <seq>tgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccagcccctccaaggcgcactcaacaggagcaactattgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="74053" stop="70807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73753" g_stop="73546" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="288" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="373" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71203" g_stop="71107" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="470" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E203708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73753" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGC</genome_strand>
        <mrna_strand>TGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207549" ref_strand="+" ref_description="SGN-E207549 [cLEC-36-P8]">
      <seq>catgttttatgtgggggagaccgtccttgctatagaatctatccataaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccagcccctccaaggcgcactcaacaggagcaactattgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="74256" stop="70873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73956" g_stop="73891" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73765" g_stop="73546" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="286" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="366" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="451" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71203" g_stop="71173" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="482" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E207549" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73956" e_stop="73891"/>
          <exon e_start="73765" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTC</genome_strand>
        <mrna_strand>CATGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344714" ref_strand="+" ref_description="SGN-E344714 [cTOF-21-E16]">
      <seq>ttggagacttcagatattctggtgtttcagttagttagtgttctggtttggggtacaaaacgtctgacctgcttctaattattagattgacgaggatattactaatagaaattcaatagtccgccaataaacttgaactttttacctagataacattcaaagactgctctatgggccatgtctaagttgctaagagacctggaaatgtaattgtttgtctgagcacagtgagcagtttggtatgtgaaggaaacacttgtcggctatttgcttggaatcattataattcattcagtgtctcacttatatggaaaggaccaagaggaagtaatacagttcaacattatcattatgcatttgagtcatgcctatctaagttttatggtgcagaatctcatgctcagttttgttcatccagagtctgagacaccaaatatccttgggcagaagcctatattcgagaaatttattggaattgtagaaactggatgacatgtagccnttgtgtttccactatatatagatggtctatatgtgcatttcaatatttacgaacttaatatctcagcagttcacacaagtcaacctggaatgaatgcattcttatgacatctttctaggcacataagtatctgtataggaaaaacaagttttaaatggatttgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72567" stop="71297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72267" g_stop="71597" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E344714" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72267" e_stop="71597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCC-TTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATG</genome_strand>
        <mrna_strand>TTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCNTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486799" ref_strand="+" ref_description="SGN-E486799 [cSTE-23-E6]">
      <seq>caactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggccaggttgaacatgttaaagccgaaaggaatctgcttgctgaagtggagagcaattgcattgttaagctatattgctctttccaagatgaggagtatctttaccttataatggaatatcttcctggtggagatatgatgactttgctgatgcgtaaggatactttaacagaagatgaggccaggttttatgtgggggagaccgtccttgctatagaatctatccataaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgacggacgcccagcccctccaaggcgcactcaacaggagcaactgttgcattggcagaagaatangaggatgcttgcttattccactgttgggacacctgattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="74579" stop="72328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74279" g_stop="74218" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74132" g_stop="73891" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="304" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73765" g_stop="73546" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="524" r_length="220" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72660" g_stop="72628" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="557" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E486799" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74279" e_stop="74218"/>
          <exon e_start="74132" e_stop="73891"/>
          <exon e_start="73765" e_stop="73546"/>
          <exon e_start="72660" e_stop="72628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATT</genome_strand>
        <mrna_strand>CAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG.....................................................................................GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCTTTCCAAGATGAGGAGTATCTTTACCTTATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGTAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGACGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTGTTGCATTGGCAGAAGAATANGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273739" ref_strand="+" ref_description="SGN-E273739 [cLEN-7-C12]">
      <seq>tgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattggaaagggtgcatttggggaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggccaggttgaacatgttaaagccgaaaggaatctgcttgctgaagtggagagcaattgcattgttaagctatattgctccttccaagatgaggagtatctttacctaataatggaatatcttcctggtggagatatgatgactttgctgatgcgcaaggatactttaacagaagatgaggccaggttttatgtgggggagaccgtccttgctatagaatctatccataaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="75338" stop="73308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75038" g_stop="74897" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74301" g_stop="74218" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="226" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74132" g_stop="73891" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="468" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73765" g_stop="73608" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="626" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E273739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75038" e_stop="74897"/>
          <exon e_start="74301" e_stop="74218"/>
          <exon e_start="74132" e_stop="73891"/>
          <exon e_start="73765" e_stop="73608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAG</genome_strand>
        <mrna_strand>TGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG.....................................................................................GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740785" ref_strand="+" ref_description="SGN-E740785 [LC22DE06]">
      <seq>gttgatttggcacagagcaagcagagtggggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattggaaagggtgcatttggggaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggccaggttgaacatgttaaagccgaaaggaatctgcttgctgaagtggagagcaattgcattgttaagctatattgctccttccaagaagaggagtatctttacctaataatgggatatcttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="77761" stop="73712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77461" g_stop="77409" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="432" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="74897" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="607" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74301" g_stop="74218" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="691" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74132" g_stop="74012" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="812" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E740785" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77461" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="74897"/>
          <exon e_start="74301" e_stop="74218"/>
          <exon e_start="74132" e_stop="74012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTG</genome_strand>
        <mrna_strand>GTTGATTTGGCACAGAGCAAGCAGAGTGGGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG.....................................................................................GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGAAGAGGAGTATCTTTACCTAATAATGGGATATCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257860" ref_strand="+" ref_description="SGN-E257860 [cLEG-39-H5]">
      <seq>aagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattggaaagggtgcatttggggaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggccaggttgaacatgttaaagccgaaaggaatctgcttgctgaagtggagagcaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="76593" stop="73778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76293" g_stop="76100" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75071" g_stop="74897" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="369" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74301" g_stop="74218" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="453" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74132" g_stop="74078" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="508" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E257860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76293" e_stop="76100"/>
          <exon e_start="75071" e_stop="74897"/>
          <exon e_start="74301" e_stop="74218"/>
          <exon e_start="74132" e_stop="74078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCA</genome_strand>
        <mrna_strand>AAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG.....................................................................................GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577254" ref_strand="+" ref_description="SGN-E577254 [34118]">
      <seq>tatcattttttgaggcagagcattcaattggttccttatggtgccttgaagcactctttataattgatgactggaatacttgttgtcgaaggaagacaaaattgctcttgcagagttctatctcttgtgattattgctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttcagtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgatgaaagaagggtcaaaattgtcatctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaaattagctgatgctgaggtttctgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctttgacaatgattggaaagggtgcatttggagaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggcccaggtttgaacatgttaaaggcgaaaggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="76741" stop="73916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="391" r_length="377" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75071" g_stop="74897" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="567" r_length="176" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74301" g_stop="74218" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="652" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74132" g_stop="74106" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="680" r_length="28" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E577254" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="74897"/>
          <exon e_start="74301" e_stop="74218"/>
          <exon e_start="74132" e_stop="74106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATG-GGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTG-AAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGG-CCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGG-TTGAACATGTTAAAGCCGAAAGGAAT</genome_strand>
        <mrna_strand>GCAGAGCATTC--AA-TTGGTTCCTTATGGTGCCTTGAAGCACTCTTTATAATTGATGACTGGAATACTTGTTGTCGAAGGAAGACAAAATTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTGCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCAGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGATGAAAGAAGGGTCAAAATTGTCATCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAAATTAGCTGATGCTGAGGTTTCTGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTTTGACAATGATTGGAAAGGGTGCATTTGGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCCAG.....................................................................................GTTTGAACATGTTAAAGGCGAAAGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295464" ref_strand="+" ref_description="SGN-E295464 [cLET-23-P22]">
      <seq>gaaagaagggtgaaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcattacatagaataacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattggaaagggtgcatttggggaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="76534" stop="73925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76234" g_stop="76100" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75071" g_stop="74897" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="310" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74301" g_stop="74225" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="387" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E295464" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76234" e_stop="76100"/>
          <exon e_start="75071" e_stop="74897"/>
          <exon e_start="74301" e_stop="74225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAG</genome_strand>
        <mrna_strand>GAAAGAAGGGTGAAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCATTACATAGAATAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739993" ref_strand="+" ref_description="SGN-E739993 [LC19CF06]">
      <seq>ttttttgaggcggagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="76782" stop="74617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="388" r_length="379" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75071" g_stop="74917" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="543" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E739993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="74917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTG</genome_strand>
        <mrna_strand>GCGGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214593" ref_strand="+" ref_description="SGN-E214593 [cLEC-79-P24]">
      <seq>tgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaattagctgatgctgaagtttccgaggagagcagacaatttactgaagtaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78000" stop="74695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77700" g_stop="77409" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="671" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="74995" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="745" r_length="74" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E214593" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77700" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="74995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTG</genome_strand>
        <mrna_strand>TGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTG-AAAAAAATTAGCTGATGCTGAAGTTTCCGAGG-AGAGCAGA-CAATTTACTGAAGTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727486" ref_strand="+" ref_description="SGN-E727486 [LA14DD04]">
      <seq>caattagaaaagaggacaaagctctttcctttctctctctctccctctcacacattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggttttcgaggaagagcagagcaatttactgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78073" stop="74702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77773" g_stop="77409" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="744" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="75002" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="814" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E727486" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77773" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="75002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAG</genome_strand>
        <mrna_strand>CAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTTCGAGGAAGAGCAGAGCAATTTACTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345167" ref_strand="+" ref_description="SGN-E345167 [cTOF-22-N2]">
      <seq>cattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgcctgagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78021" stop="74730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77721" g_stop="77409" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="692" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="75030" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="734" r_length="42" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E345167" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77721" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="75030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTC</genome_strand>
        <mrna_strand>CATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCCTGAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271945" ref_strand="+" ref_description="SGN-E271945 [cLEM-8-K17]">
      <seq>tttctcacttttttgttttccctctttttcatctttagggtttgtcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="77924" stop="74738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77624" g_stop="77409" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="596" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="75038" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="630" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E271945" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77624" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="75038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTT-TCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCT</genome_strand>
        <mrna_strand>TTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTGTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578219" ref_strand="+" ref_description="SGN-E578219 [LE12AG10]">
      <seq>tttcctttctctctctctccctctcacacattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggatactactagtaatgggaaagaagggtcgatattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacanggcacannatgagagcttgcaggagcgtagagagcgacgctatatgcttgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78049" stop="74750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77749" g_stop="77409" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="720" r_length="379" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="75050" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="742" r_length="22" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E578219" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77749" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="75050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAA</genome_strand>
        <mrna_strand>TTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGATACTACTAGTAATGGGAAAGAAGGGTCGATATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACANGGCACANNATGAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTATATGCTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468526" ref_strand="+" ref_description="SGN-E468526 [cSTB-5-G5]">
      <seq>ttcatctttagggttttccttttttttttcaaccattcacagttcaactgtgttatacccaaccaacccaccttatctgatttcacttggtaaaccaaatattcatcttttttcctttttgggttttgttgatttggtaccagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaattggttccttatggtgctttgaagctcgctttataattgattactggaatacttgttgtcgaaggaagacaaaattgctcttgcagagttctatctcttgtgattattgctcctatctttagtaagttgactaaggtggaggatggagtctgcccaacgatggttcagtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgagaaagaagggtcaaaattgtcatctcatgaggaagccccttcaacctgccactaaacagaaagttgcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="77897" stop="75863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77585" g_stop="77409" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.859"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76163" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="495" r_length="314" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E468526" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77585" e_stop="77409"/>
          <exon e_start="76478" e_stop="76163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCTTTTTATTTT-TTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTA-CCAAC-AACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCA-CAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAA-CTGCCACTAAACAGAAAGTTGCAGCTGC</genome_strand>
        <mrna_strand>TTCATCTTTAGGGTTTTCCTTTTTTTTTTCAACCATTCACAGTTCAACTGTGTTATACCCAACCAACCCACCTTATCTGATTTCACTTGGTAAACCAAATATTCATCTTTTTTCCTTTTTGGGTTTTGTTGATTTGGTACCAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTC---AATTGGTTCCTTATGGTGCTTTGAAGCTCGCTTTATAATTGATTACTGGAATACTTGTTGTCGAAGGAAGACAAAATTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTGCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCCAACGATGGTTCAGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGAGAAAGAAGGGTCAAAATTGTCATCTCATGAGGAAGCCCCTTCAACCTGCCACTAAACAGAAAGTTGCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444054" ref_strand="+" ref_description="SGN-E444054 [cSTA-41-O9]">
      <seq>gttctttcctttctctctctcacacattgttgtgtgtttccatggtgaaatgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctcttttcatctttagggttttccttttttttttcaaccattcacaattcaactgtgttataccaacaacccaacttatctgatttcacttggtaaaccaaatattcatcttttttccattttgggttttgttgatttggtacagagcaagcagagttaggcattcttgaatcattttttaaggcagagcattcaattggttccttatggtgctttgaagctcgctttataattgattactggaatacttgttgtcgaaggaagacaaaattgctcttgcagagttctatctcttgtgattattgctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttcagtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgagaaagaagggtcaaaattgtcatctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78043" stop="75907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77744" g_stop="77409" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76207" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="594" r_length="269" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E444054" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.024" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77744" e_stop="77409"/>
          <exon e_start="76478" e_stop="76207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTC-TCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCAT</genome_strand>
        <mrna_strand>GTTCTTTCCTTTCTCTCTCTCACACATTGTTGTGTGTTTCCATGGTGAAATGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTC-TTTTCATCTTTAGGGTTTTCC----------TTTT-TTTTTTCAACCATTCACAATTCAACTGTGTTATACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTCATCTTTTTTCCATTTTGGGTTTTGTTGATTTGGTACAGAGCAAGCAGAGTTAGGCATTCTTGAATCATTTTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTC---AATTGGTTCCTTATGGTGCTTTGAAGCTCGCTTTATAATTGATTACTGGAATACTTGTTGTCGAAGGAAGACAAAATTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTGCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCAGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGAGAAAGAAGGGTCAAAATTGTCATCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584842" ref_strand="+" ref_description="SGN-E584842 [10763]">
      <seq>atctttctcacttttttgttttccatcttttcatctttagggttttcctttttttttttcaaccattcacagttcaactgtgttataccaacaacccaccttatctgatttcacttggtaaaccaaatattcatcttttttcctttttgggttttgttgatttggtacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaattggttccttatggtgctttgaagctcgctttataattgattactggaatacttgttgtcgaaggaagacaaaattgctcttgcagagttctatctcttgtgattattgctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttcagtaagcttggcaagaaagataagcctaagccctcccaaagaagcaggaaaactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="77927" stop="75943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77627" g_stop="77409" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76243" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="444" r_length="236" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E584842" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77627" e_stop="77409"/>
          <exon e_start="76478" e_stop="76243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAG-CCTCCC-AAGAAGCAGG-AAACTACT</genome_strand>
        <mrna_strand>ATCTTTCTCACTTTTTTGTTTTCCATC-TTTTCATCTTTAGGGTTTTCC---------TTTTT-TTTTTTCAACCATTCACAGTTCAACTGTGTTATACCAACAACCCACCTTATCTGATTTCACTTGGTAAACCAAATATTCATCTTTTTTCCTTTTTGGGTTTTGTTGATTTGGTACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTC---AATTGGTTCCTTATGGTGCTTTGAAGCTCGCTTTATAATTGATTACTGGAATACTTGTTGTCGAAGGAAGACAAAATTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTGCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCAGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCCTCCCAAAGAAGCAGGAAAACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419405" ref_strand="+" ref_description="SGN-E419405 [STM-29-F17]">
      <seq>gttctttcctttctctctctcacacattgttgtgtgtttccatggtgaaatgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctcttttcatctttagggttttccttttttttttcaaccattcacaattcaactgtgttataccaacaacccaacttatctgatttcacttggtaaaccaaatattcatcttttttccattttgggttttgttgatttggtacagagcaagcagagttaggcattcttgaatcattttttaaggcagagcattcaattggttccttatggtgctttgaagctcgctttataattgattactggaatacttgttgtcgaaggaagacaaaattgctcttgcagagttctatctcttgtgattattgctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttcagtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78043" stop="75947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77744" g_stop="77409" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.921" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76247" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="554" r_length="229" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E419405" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77744" e_stop="77409"/>
          <exon e_start="76478" e_stop="76247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTC-TCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAAC</genome_strand>
        <mrna_strand>GTTCTTTCCTTTCTCTCTCTCACACATTGTTGTGTGTTTCCATGGTGAAATGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTC-TTTTCATCTTTAGGGTTTTCC----------TTTT-TTTTTTCAACCATTCACAATTCAACTGTGTTATACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTCATCTTTTTTCCATTTTGGGTTTTGTTGATTTGGTACAGAGCAAGCAGAGTTAGGCATTCTTGAATCATTTTTTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTC---AATTGGTTCCTTATGGTGCTTTGAAGCTCGCTTTATAATTGATTACTGGAATACTTGTTGTCGAAGGAAGACAAAATTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTGCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCAGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331186" ref_strand="+" ref_description="SGN-E331186 [cTOD-6-C11]">
      <seq>aagctctttcctttctctctctctccctctcacacattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78055" stop="75965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77755" g_stop="77409" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76265" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="561" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E331186" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77755" e_stop="77409"/>
          <exon e_start="76478" e_stop="76265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCC</genome_strand>
        <mrna_strand>AAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341356" ref_strand="+" ref_description="SGN-E341356 [cTOE-23-E15]">
      <seq>tcaattataaaagaggacaaagctctttcctttctctctctctccctctcacacattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78074" stop="75980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77774" g_stop="77409" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76280" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="565" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E341356" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77774" e_stop="77409"/>
          <exon e_start="76478" e_stop="76280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAA</genome_strand>
        <mrna_strand>TCAATTATAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366147" ref_strand="+" ref_description="SGN-E366147 [cLPT-15-N12]">
      <seq>tcctttctctctctctctcacacattgttgtgtgtttccatggagaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacagtttctcacttttttgttttccctctttttcatctttagggttttccttttttttttatattttttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatattcatcttttttccattttgggttttgttgatttggtacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgtttcaaaactcgctttataattgattactagaatacttgttgtcgaaggaagaaaaaattgctcttgcagagttctatctcttgcgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttcagtaagcttggcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78043" stop="75982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77743" g_stop="77409" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76282" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="531" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E366147" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77743" e_stop="77409"/>
          <exon e_start="76478" e_stop="76282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAG</genome_strand>
        <mrna_strand>TCCTTTCTCTCTCTCTCTCACACATTGTTGTGTGTTTCCATGGAGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACA-GTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTTTTTTATATTTTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTCATCTTTTTTCCATTTTGGGTTTTGTTGATTTGGTACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTTCAAAACTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAATTGCTCTTGCAGAGTTCTATCTCTTGCGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCAGTAAGCTTGGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269459" ref_strand="+" ref_description="SGN-E269459 [cLEM-2-M18]">
      <seq>tctctctctccctctcacacattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78040" stop="76120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77740" g_stop="77409" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76420" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="391" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E269459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77740" e_stop="77409"/>
          <exon e_start="76478" e_stop="76420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTA</genome_strand>
        <mrna_strand>TCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621204" ref_strand="+" ref_description="SGN-E621204 [71911]">
      <seq>ctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggagatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaagcacacttcctcttgattcattttttctcctaccttttgagataaattaagaacaacacacctcaaaggtctaggagatatcagtttgattttgtagtatttatgatatttatatcttacttttcttcattaacttaatttccagttgttgtttcttttagttgacaaactcatagactacatattatatgcatttataggctctattcttaaattttggcattggtaaaagcttacttgatgcattacatataatgtaaacttatgtgttaaacatgatgaaatgcataaaattcaaagtctcatagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="84795" stop="57244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84495" g_stop="84028" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84027" i_stop="83456" i_length="572">
            <donor d_prob="0.991" d_score="0.68"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83449" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="468" r_length="7" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E621204" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84495" e_stop="84028"/>
          <exon e_start="83455" e_stop="83449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCA-TTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAG-TGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTGGCAAATATTTTTACTTGAGATATGTTCCCAATTAACTTTTTTTTAGTTAATCCCTATTAGAGGTACTTAAAAACTGTTAAAACCTTTCGGGCTAGCTCAGTGGTCTGGGCTCGGGATTTTCACGTTAGAGGTCTCAAGTTTAAAAGTCCTTGCCAGCAAGCAATTGGTTTGCCATCAGGATCGAACTCGTCGTACTGAGCTTGTCTGGTGTGAGTTTTTATTGCATAGAAGTAAAGAGTTTTATCCTGTTTAACACTCGAAGGATAGCGAATGCGAATTTTTCTTAGAAATTAAAAAAGAAAAGTTGATGAAGTGGTTATTTCCCTTAACTATTCATTTAATAAGTAATACTACTAACAGCTTTAAATCTTAACTTTTTGCCTCTTCTATTAATCATGTTTGAATGTCAAATCAGTTAGTTATAGGCTGTATGAATCTTCTATAATTATTTTTTGCTCTATATTTGGGTCTATTTCTCCTAATACTAAATACTTTATTTTTTTTAACACAAATAGTATTTTAAAGGCATGATGCACGTATAGACACTTTAATTAATTTGGTTTCATTAACAGTTGAACA</genome_strand>
        <mrna_strand>CTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGAGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACT-AAGCA-CACTTCCTCTTGATTCATTTTTTCTCCTACCTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTC-TAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATATCTTACTTTTCTTCA-TTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTGGTAAAAGCTTACTTGATGCATTACATATAATGTAAACTTATGTGTTAAACA---TGATGAAATGCATAAAATTC--AAAGTCTCATAGCAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621535" ref_strand="+" ref_description="SGN-E621535 [75282]">
      <seq>ctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggagatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaagcacacttcctcttgattcattttttctcctaccttttgagataaattaagaacaacacacctcaaaggtctaggagatatcagtttgattttgtagtatttatgatatttatatcttacttttcttcattaacttaatttccagttgttgtttcttttagttgacaaactcatagactacatattatatgcatttataggctctattcttaaattttggcattggtaaaagcttacttgatgcattacatataatgtaaacttatgtgttaaacatgatgaaatgcataaaattcaaagtctcatagcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="84795" stop="57244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84495" g_stop="84028" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84027" i_stop="83456" i_length="572">
            <donor d_prob="0.991" d_score="0.68"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83455" g_stop="83449" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="468" r_length="7" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E621535" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84495" e_stop="84028"/>
          <exon e_start="83455" e_stop="83449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCA-TTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAG-TGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTGGCAAATATTTTTACTTGAGATATGTTCCCAATTAACTTTTTTTTAGTTAATCCCTATTAGAGGTACTTAAAAACTGTTAAAACCTTTCGGGCTAGCTCAGTGGTCTGGGCTCGGGATTTTCACGTTAGAGGTCTCAAGTTTAAAAGTCCTTGCCAGCAAGCAATTGGTTTGCCATCAGGATCGAACTCGTCGTACTGAGCTTGTCTGGTGTGAGTTTTTATTGCATAGAAGTAAAGAGTTTTATCCTGTTTAACACTCGAAGGATAGCGAATGCGAATTTTTCTTAGAAATTAAAAAAGAAAAGTTGATGAAGTGGTTATTTCCCTTAACTATTCATTTAATAAGTAATACTACTAACAGCTTTAAATCTTAACTTTTTGCCTCTTCTATTAATCATGTTTGAATGTCAAATCAGTTAGTTATAGGCTGTATGAATCTTCTATAATTATTTTTTGCTCTATATTTGGGTCTATTTCTCCTAATACTAAATACTTTATTTTTTTTAACACAAATAGTATTTTAAAGGCATGATGCACGTATAGACACTTTAATTAATTTGGTTTCATTAACAGTTGAACA</genome_strand>
        <mrna_strand>CTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGAGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACT-AAGCA-CACTTCCTCTTGATTCATTTTTTCTCCTACCTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTC-TAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATATCTTACTTTTCTTCA-TTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTGGTAAAAGCTTACTTGATGCATTACATATAATGTAAACTTATGTGTTAAACA---TGATGAAATGCATAAAATTC--AAAGTCTCATAGCAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217045" ref_strand="+" ref_description="SGN-E217045 [cLEL-1-N17](-)">
      <seq>aggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttgattcatttttctcctaacttttgagataaattaagaacaacaccccctcaaaggtcaaaggagatatcagtttgattttgtagtatttatgatatttatttcttacttttcatcatttaacttaatttccagttgttgtttcttttagtgacaaactcatagactacatattatatgcatttataggctctattcttaaattttggcattagtaaaagcttactttatgcattacatgtaatgtaaaattatgtgttaaacatgttgctgaaatcaagaagattcaaaaagtctcatagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="84743" stop="66537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84443" g_stop="84028" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84027" i_stop="83741" i_length="287">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83740" g_stop="83727" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="431" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E217045" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84443" e_stop="84028"/>
          <exon e_start="83740" e_stop="83727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACA-CACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTGGCAAATATTTTTACTTGAGATATGTTCCCAATTAACTTTTTTTTAGTTAATCCCTATTAGAGGTACTTAAAAACTGTTAAAACCTTTCGGGCTAGCTCAGTGGTCTGGGCTCGGGATTTTCACGTTAGAGGTCTCAAGTTTAAAAGTCCTTGCCAGCAAGCAATTGGTTTGCCATCAGGATCGAACTCGTCGTACTGAGCTTGTCTGGTGTGAGTTTTTATTGCATAGAAGTAAAGAGTTTTATCCTGTTTAACACTCGAAGGATAGCGAATGCGAATTTTTCTTAGAAATTAAAAAAGAA</genome_strand>
        <mrna_strand>AGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACCCCCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATCAAGAAGATTCAAAAAGTCTCATAGAAAAAAAAA...............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745812" ref_strand="+" ref_description="SGN-E745812 [GI|47105058]">
      <seq>ggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcactctttgttgttgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacattgtccattgcctgaaagacgtttcaattgcttgattcctcctccagctggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcaaacataccacatactcaccttgcacatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaatatgctgaaatttccgaacaataacttgaacaatggaggaaggatacgcacagtttttgacgttggttgtggtgtggctagttttggtggttatcttctatcctctgatatcatagcaatgtcgttggcgccgaatgatgtgcatcagaatcagatccaatttgccttagagagaggaattcctgcatatcttggtgttcttgggacaaaaaggcttccttatccaagcagatcatttgaatttgctcactgttcccgttgtaggatcgattggcttcagagggatggcatccttcttctcgagcttgatagggtgcttagacctggaggctattttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttgattcatttttctcctaacttttgagataaattaagaacaacacacctcaaaggtcaaaggagatatcagtttgattttgtagtatttatgatatttatttcttacttttcatcatttaacttaatttccagttgttgtttcttttagtgacaaactcatagactacatattatatgcatttataggctctattcttaaattttggcattagtaaaagcttactttatgcattacatgtaatgtaaaattatgtgttaaacatgttgctgaaatgaagaagattcaaaaagtctcagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88249" stop="83735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87949" g_stop="87637" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="478" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="661" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86255" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="1256" r_length="595" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1257" r_stop="1369" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1370" r_stop="1590" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84686" g_stop="84041" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1591" r_stop="2236" r_length="646" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2237" polyA_stop="2253"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E745812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2236</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87949" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTC</genome_strand>
        <mrna_strand>GGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413531" ref_strand="+" ref_description="SGN-E413531 [STM-18-E9]">
      <seq>caaaccttttttttgagactttgaattttatgtatttcatcatgtttaacacataagtttacattatatgtaatgcatcaagtaagcttttaccaatgccaaaatttaagaatagagcctataaatgcatataatatgtagtctatgagtttgtcaactaaaagaaacaacaactggaaattaagttaatgaagaaaagtaagatataaatatcataaatactacaaaatcaaactgatatctcctagacctttggaggtgtgttgttcttaatttatctcaaaaggtaggagaaaaaatgaatcaagaggaagtgtgcttagtgtagcaaacttcatttactctgtatctctgatgctttcacttgtgagccacaacttcttttggatgatgaaaacaatctcatctccttcctggtcttgatctggcgttggatcagctaccgcttcccagtgcaacggagataaatacttctttacaaagtcaataacatgttgtttgtcgcggaagatgacaaaaccactagggcttactatgcgatctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="83769" stop="84879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84069" g_stop="84579" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="547" r_length="510" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E413531" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84069" e_stop="84579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATGTTTAACACATAATTTTACATTACATGTAATGCATAAAGTAAGCTTTTACTAATGCCAAAATTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTC-ACTAAAAGAAACAACAACTGGAAATTAAGTTAAATGATGAAAAGTAAGAAATAAATATCATAAATACTACAAAATCAAACTGATATCTCCTTTGACCTTT-GAGGTGTGTTGTTCTTAATTTATCTCAAAAGTTAGGAG-AAAAATGAATCAAGATGAAGTGGTGCTTTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCCCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACAAAGTCAATAACATGTTGTTTGTCGCGGAAGATGACAAAACCACTAGGCCTTACTATGCGATCTATCT</genome_strand>
        <mrna_strand>CATCATGTTTAACACATAAGTTTACATTATATGTAATGCATCAAGTAAGCTTTTACCAATGCCAAAATTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTCAACTAAAAGAAACAACAACTGGAAATTAAGTT-AATGAAGAAAAGTAAGATATAAATATCATAAATACTACAAAATCAAACTGATATCTCC-TAGACCTTTGGAGGTGTGTTGTTCTTAATTTATCTCAAAAGGTAGGAGAAAAAATGAATCAAGAGGAAGT-GTGC-TTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCTCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACAAAGTCAATAACATGTTGTTTGTCGCGGAAGATGACAAAACCACTAGGGCTTACTATGCGATCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277564" ref_strand="+" ref_description="SGN-E277564 [cLER-6-C24]">
      <seq>tagtatcgagttttttttttttttttttaagaatagagcctataaatgcatataatatgtagtctatgagtttgtcactaaaagaaacaacaactggaaattaagttaaatgatgaaaagtaagaaataaatatcataaatactacaaaatcaaactgatatctcctttgacctttgaggtgtgttgttcttaatttatctcaaaagttaggagaaaaatgaatcaagatgaagtggtgctttagtgtagcaaacttcatttactctgtatctctgatgctttcacttgtgagccacaacttcttttggatgatgaaaacaatctcatccccttcctggtcttgatctggcgttggatcagctaccgcttcccagtgcaacggagataaatacttctttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="57230" stop="84812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84111" g_stop="84512" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E277564" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84111" e_stop="84512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAGCTTTTACTAATGCCAAAATTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTCACTAAAAGAAACAACAACTGGAAATTAAGTTAAATGATGAAAAGTAAGAAATAAATATCATAAATACTACAAAATCAAACTGATATCTCCTTTGACCTTTGAGGTGTGTTGTTCTTAATTTATCTCAAAAGTTAGGAGAAAAATGAATCAAGATGAAGTGGTGCTTTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCCCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACA</genome_strand>
        <mrna_strand>TAGTATCGAGTTTTTTTTTTTTTTTTTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTCACTAAAAGAAACAACAACTGGAAATTAAGTTAAATGATGAAAAGTAAGAAATAAATATCATAAATACTACAAAATCAAACTGATATCTCCTTTGACCTTTGAGGTGTGTTGTTCTTAATTTATCTCAAAAGTTAGGAGAAAAATGAATCAAGATGAAGTGGTGCTTTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCCCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430114" ref_strand="-" ref_description="SGN-E430114 [STM-53-K23]">
      <seq>acaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggagatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaagcacacttcctcttgattcattttttctcctaccttttgagataaattaagaacaacacacctcaaaggtctaggagatatcagtttgattttgtagtatttatgatatttatatcttacttttcttcattaacttaatttccagttgttgtttcttttagttgacaaactcatagactacatattatatgcatttataggctctattcttaaattttggcattggtaaaagcttaaaaaaaaaaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="84834" stop="83814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84534" g_stop="84114" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="430"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E430114" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430114" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84534" e_stop="84114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCA-TTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAG-TGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTA</genome_strand>
        <mrna_strand>ACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGAGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACT-AAGCA-CACTTCCTCTTGATTCATTTTTTCTCCTACCTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTC-TAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATATCTTACTTTTCTTCA-TTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTGGTAAAAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329779" ref_strand="+" ref_description="SGN-E329779 [cTOD-3-E20]">
      <seq>ttttttttttaagaatagagcctataaatgcatataatatgtagtctatgagtttgtcactaaaagaaacaacaactggaaattaagttaaatgatgaaaagtaagaaataaatatcataaatactacaaaatcaaactgatatctcctttgacctttgaggtgtgttgttcttaatttatctcaaaagttaggagaaaaatgaatcaagatgaagtggtgctttagtgtagcaaacttcatttactctgtatctctgatgctttcacttgtgagccacaacttcttttggatgatgaaaacaatctcatccccttcctggtcttgatctggcgttggatcagctaccgcttcccagtgcaacggagataaatacttctttacaaagtcaataacatgttgtttgtcgcggaagatgacaaaaccactaggccttactatgcgatctatctcgagtaacagatcctcaccactgcagcctttcttttcaatgtcggagaatatattccatgcatggagcaaatcataggtcctaggatatgttgaaaatgcttcacaccagtcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="83836" stop="84995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84129" g_stop="84696" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E329779" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84129" e_stop="84696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAAAATTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTCACTAAAAGAAACAACAACTGGAAATTAAGTTAAATGATGAAAAGTAAGAAATAAATATCATAAATACTACAAAATCAAACTGATATCTCCTTTGACCTTTGAGGTGTGTTGTTCTTAATTTATCTCAAAAGTTAGGAGAAAAATGAATCAAGATGAAGTGGTGCTTTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCCCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACAAAGTCAATAACATGTTGTTTGTCGCGGAAGATGACAAAACCACTAGGCCTTACTATGCGATCTATCTCGAGTAACAGATCCTCACCACTGCAGCCTTTCTTTTCAATGTCGGAGAATATATTCCATGCATGGAGCAAATCATAGGTCCTAGGATATGTTGAAAATGCTTCACACCTGCACTCAA</genome_strand>
        <mrna_strand>TTTTTTTTTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTCACTAAAAGAAACAACAACTGGAAATTAAGTTAAATGATGAAAAGTAAGAAATAAATATCATAAATACTACAAAATCAAACTGATATCTCCTTTGACCTTTGAGGTGTGTTGTTCTTAATTTATCTCAAAAGTTAGGAGAAAAATGAATCAAGATGAAGTGGTGCTTTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCCCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACAAAGTCAATAACATGTTGTTTGTCGCGGAAGATGACAAAACCACTAGGCCTTACTATGCGATCTATCTCGAGTAACAGATCCTCACCACTGCAGCCTTTCTTTTCAATGTCGGAGAATATATTCCATGCATGGAGCAAATCATAGGTCCTAGGATATGTTGAAAATGCTTCACACCAGTCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555026" ref_strand="+" ref_description="SGN-E555026 [cTSC-6-C9]">
      <seq>gtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttgattcatttttctcctaacttttgagataaattaagaacaacacacctcanaggtcaaaggagatatcagtttgattttgtagtatttatgatatttatttcttacttttcatcatttaacttaatttccagttgttgtttcttttagtgacaaactcatagactacatattatatgcatttataggctctattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85882" stop="83839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85582" g_stop="85560" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="244" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84139" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="792" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E555026" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85582" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTT</genome_strand>
        <mrna_strand>GTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCANAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553177" ref_strand="+" ref_description="SGN-E553177 [cTSB-2-G1]">
      <seq>gtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttgattcatttttctcctaacttttgagataaattaagaacaacacacctcaaaggtcaaaggagatatcagtttgattttgtagtatttatgatatttatttcttacttttcatcatttaacttaatttccagttgttgtttcttttagtgacaaactcatagactacatattatatgcatttataggctctattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85882" stop="83841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85582" g_stop="85560" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="244" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84141" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="790" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E553177" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85582" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTC</genome_strand>
        <mrna_strand>GTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237695" ref_strand="+" ref_description="SGN-E237695 [cLED-19-F13]">
      <seq>gaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttgattcatttttctcctaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85642" stop="84014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85342" g_stop="85208" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84686" g_stop="84314" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="508" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E237695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85342" e_stop="85208"/>
          <exon e_start="84686" e_stop="84314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTT</genome_strand>
        <mrna_strand>GAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228481" ref_strand="+" ref_description="SGN-E228481 [cLED-3-H7]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84335" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="638" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E228481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTG</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242803" ref_strand="+" ref_description="SGN-E242803 [cLED-31-J9]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84421" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="552" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E242803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCA</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231756" ref_strand="+" ref_description="SGN-E231756 [cLED-4-H24]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaatgggatgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84431" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="542" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E231756" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATT</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAATGGGATGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325765" ref_strand="+" ref_description="SGN-E325765 [cTOC-15-N16]">
      <seq>tccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86621" stop="84136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86321" g_stop="86255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="180" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="401" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84686" g_stop="84436" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="652" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E325765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86321" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATG</genome_strand>
        <mrna_strand>TCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231701" ref_strand="+" ref_description="SGN-E231701 [cLED-4-D19]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtgggtttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84495" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="478" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E231701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATC</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGGTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243395" ref_strand="+" ref_description="SGN-E243395 [cLED-34-E21]">
      <seq>gatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaagggcctagtggttttgtcatcttccgcgacaaacaacatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86694" stop="84220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86394" g_stop="86255" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="253" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="474" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84686" g_stop="84520" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="642" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E243395" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86394" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAA-GGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTA</genome_strand>
        <mrna_strand>GATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243533" ref_strand="+" ref_description="SGN-E243533 [cLED-34-P4]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84523" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="450" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E243533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATG</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228463" ref_strand="+" ref_description="SGN-E228463 [cLED-3-B7]">
      <seq>gatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86694" stop="84263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86394" g_stop="86255" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="253" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="474" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84686" g_stop="84563" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="598" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E228463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86394" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTA</genome_strand>
        <mrna_strand>GATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462759" ref_strand="+" ref_description="SGN-E462759 [cPRO-12-J23]">
      <seq>tcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggaaaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaatgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaatatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcggactggctccttggccagcgaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacgtggagctttggcagcgaagggttgaacattactggaatattttaagttcaaagatctcttcagacacactgagaaatatcatggacatgaaggccaatctggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagaaggacctaacactctcaagattgtatatgatcgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctangacctatgatttgctccatgcatggaatgtattctccgacattgaaaagaaaggctgcagtggtgaggatctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86802" stop="84282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86502" g_stop="86255" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="361" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="582" r_length="221" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84686" g_stop="84582" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="687" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E462759" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86502" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACT</genome_strand>
        <mrna_strand>TCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAAAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAATGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAATATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGACTGGCTCCTTGGCCAGCGAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACGTG...................................................................................................................................GAGCTTTGGCAGCGAAGGGTTGAACATTACTGGAATATTTTAAGTTCAAAGATCTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATCTGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGAAGGACCTAACACTCTCAAGATTGTATATGATCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTANGACCTATGATTTGCTCCATGCATGGAATGTATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242438" ref_strand="+" ref_description="SGN-E242438 [cLED-30-P19]">
      <seq>ttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86815" stop="84313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86515" g_stop="86255" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="374" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="595" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84686" g_stop="84613" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="669" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E242438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86515" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAA</genome_strand>
        <mrna_strand>TTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236227" ref_strand="+" ref_description="SGN-E236227 [cLED-20-J5]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaagacctatgatttgctccatgcatggaatatattctccgacattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84613" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="360" r_length="74" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E236227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAA</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAAGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231394" ref_strand="+" ref_description="SGN-E231394 [cLED-10-N7]">
      <seq>tatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgcggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctatgacctatgatttgctccatgcatggaatatattctccgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="85924" stop="84317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85624" g_stop="85560" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="286" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84686" g_stop="84617" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="356" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E231394" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85624" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATT</genome_strand>
        <mrna_strand>TATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGCGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTATGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241678" ref_strand="+" ref_description="SGN-E241678 [cLED-36-K19]">
      <seq>ttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86815" stop="84916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86515" g_stop="86255" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="374" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85216" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="587" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E241678" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86515" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACT</genome_strand>
        <mrna_strand>TTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430113" ref_strand="+" ref_description="SGN-E430113 [STM-53-K23]">
      <seq>attggattcagagggatggtatccttcttctcgagcttgatagggtgcttagacctggaggctattttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggaaaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaatgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaatatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcggactggctccttggccagcgaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacgtggagctttggcagcgaagggttgaacattactggaatattttaagttcaaagatctcttcagacacactgagaaatatcatggacatgaaggccaatctggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86881" stop="84974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86581" g_stop="86255" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="440" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85274" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="595" r_length="155" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E430113" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86581" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACC</genome_strand>
        <mrna_strand>ATTGGATTCAGAGGGATGGTATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAAAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAATGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAATATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGACTGGCTCCTTGGCCAGCGAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACGTG...................................................................................................................................GAGCTTTGGCAGCGAAGGGTTGAACATTACTGGAATATTTTAAGTTCAAAGATCTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATCTGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237816" ref_strand="+" ref_description="SGN-E237816 [cLED-18-M18]">
      <seq>caggatgattaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttctttagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86786" stop="84991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86486" g_stop="86255" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85291" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="483" r_length="138" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E237816" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86486" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGG</genome_strand>
        <mrna_strand>CAGGATGATTAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTTAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240981" ref_strand="+" ref_description="SGN-E240981 [cLED-24-L11]">
      <seq>gatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86694" stop="85020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86394" g_stop="86255" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="253" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85320" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="362" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E240981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86394" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTG</genome_strand>
        <mrna_strand>GATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239493" ref_strand="+" ref_description="SGN-E239493 [cLED-23-D20]">
      <seq>ctgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86667" stop="85023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86367" g_stop="86255" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="226" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85323" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="332" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E239493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86367" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCAT</genome_strand>
        <mrna_strand>CTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291105" ref_strand="+" ref_description="SGN-E291105 [cLET-8-K18]">
      <seq>cccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86801" stop="85028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86501" g_stop="86255" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="360" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85428" g_stop="85328" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="461" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E291105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86501" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGG</genome_strand>
        <mrna_strand>CCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461168" ref_strand="+" ref_description="SGN-E461168 [cPRO-7-D5]">
      <seq>attggattcagagggatggtatccttcttctcgagcttgatagggtgcttagacctggaggctattttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggaaaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaatgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctggttggggtgtgaatatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcggactggctccttggccagcgagggtatccactcctcctcctcgtcttgctgattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="86881" stop="85291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86581" g_stop="86255" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85591" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="409" r_length="82" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E461168" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86581" e_stop="86255"/>
          <exon e_start="85672" e_stop="85591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGG</genome_strand>
        <mrna_strand>ATTGGATTCAGAGGGATGGTATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAAAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAATGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGGTTGGGGTGTGAATATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGACTGGCTCCTTGGCCAGCGAGGGTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322220" ref_strand="+" ref_description="SGN-E322220 [cTOB-24-P1]">
      <seq>tcgttggcgccgaatgatgtgcatcagaatcagatccaatttgccttagagagaggaattcctgcatatcttggtgttcttgggacaaaaaggcttccttatccaagcagatcatttgaatttgctcactgttcccgttgtaggatcgattggcttcagagggatggcatccttcttctcgagcttgatagggtgcttagacctggaggctattttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="87029" stop="85296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86729" g_stop="86255" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85672" g_stop="85596" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="552" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E322220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86729" e_stop="86255"/>
          <exon e_start="85672" e_stop="85596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGAT</genome_strand>
        <mrna_strand>TCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461335" ref_strand="+" ref_description="SGN-E461335 [cPRO-8-G7]">
      <seq>cgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaacatgctgaaatttccgaacaataacttgaacaatggaggaaggatacgcacggtttttgacgttggttgtggtgtggctagctttggtggttatcttctatcgtctgatatcatagcaatgtcattggcgccgaatgatgtgcatcagaatcagatccaatttgccttagagagaggaatccctgcatatcttggtgttcttggaacaaaaaggcttccctatccaagcagatcatttgaatttgctcactgttcccgttgtaggattgattggattcagagggatggtatccttcttctcgagcttgatagggtgcttagacctggaggctattttgcctattcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="87459" stop="86202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87159" g_stop="86981" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86849" g_stop="86502" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="527" r_length="348" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E461335" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87159" e_stop="86981"/>
          <exon e_start="86849" e_stop="86502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCT</genome_strand>
        <mrna_strand>CGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAC...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACGGTTTTTGACGTTGGTTGTGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCGTCTGATATCATAGCAATGTCATTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATCCCTGCATATCTTGGTGTTCTTGGAACAAAAAGGCTTCCCTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATTGATTGGATTCAGAGGGATGGTATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413530" ref_strand="+" ref_description="SGN-E413530 [STM-18-E9]">
      <seq>tcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacactgcccattgcctgaaagacgtttcaattgcttgattcctcctccagcaggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaacatgctgaaatttccgaacaataacttgaacaatggaggaaggatacgcacggtttttgacgttggttgtggtgtggctagctttggtggttatcttctatcgtctgatatcatagcaatgtcattggcgccgaatgatgtgcatcagaatcagatccaatttgccttagagagaggaatccctgcatatcttggtgttcttggaaccaaaaggcttccctatccaagcagatcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88038" stop="86312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87738" g_stop="87637" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="267" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="450" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86612" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="688" r_length="238" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E413530" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87738" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTG</genome_strand>
        <mrna_strand>TCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACACTGCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCAGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAC...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACGGTTTTTGACGTTGGTTGTGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCGTCTGATATCATAGCAATGTCATTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATCCCTGCATATCTTGGTGTTCTTGGAACCAAAAGGCTTCCCTATCCAAGCAGATCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561997" ref_strand="+" ref_description="SGN-E561997 [17192]">
      <seq>tggaagccgatcgttgaggaaactgggatcctcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacactgcccattgcctgaaagacgtttcaattgcttgattcctcctccagcaggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaacatgctgaaatttccaaacaataacttgaacaatggaggaaggatacgcacagtttttgacgttggttgtggtgtggctagctttggtggttatcttctatcgtctgatatcatagcaatgtcattggcgccgaatgatgtgcatcagaatcagatccaatttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88069" stop="86384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87769" g_stop="87637" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="298" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="481" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86684" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="647" r_length="166" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E561997" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87769" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCT</genome_strand>
        <mrna_strand>TGGAAGCCGATCGTTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACACTGCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCAGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAC...................................................................................................................................ATGCTGAAATTTCCAAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCGTCTGATATCATAGCAATGTCATTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403045" ref_strand="+" ref_description="SGN-E403045 [PPC-9-O20]">
      <seq>gtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacactgcccattgcctgaaagacgtttcaattgcttgattcctcctccagcaggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaacatgctgaaatttccgaacaataacttgaacaatggaggaaggatacgcacggtttttgacgttggttgtggtgtggctagctttggtggttatcttctatcgtctgatatcatagcaatgtcattggcgccgaatgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88014" stop="86409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87715" g_stop="87637" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="244" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="427" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86709" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="568" r_length="141" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E403045" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E403045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87715" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTG</genome_strand>
        <mrna_strand>GTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACACTGCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCAGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAC...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACGGTTTTTGACGTTGGTTGTGGTGTGGCTAGCTTTGGTGGTTATCTTCTATCGTCTGATATCATAGCAATGTCATTGGCGCCGAATGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472335" ref_strand="+" ref_description="SGN-E472335 [cSTB-28-I10]">
      <seq>tcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacactgcccattgcctgaaagacgtttcaattgcttgattcctcctccagcaggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaacatgctgaaatttccgaacaataacttgaacaatggaggaaggatacgcacggtttttgacgttggttgtggtgtggctagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88038" stop="86465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87738" g_stop="87637" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="267" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="450" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86765" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="535" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E472335" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87738" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTG</genome_strand>
        <mrna_strand>TCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACACTGCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCAGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAC...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACGGTTTTTGACGTTGGTTGTGGTGTGGCTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464164" ref_strand="+" ref_description="SGN-E464164 [cPRO-17-M15]">
      <seq>ctgctttagagtatggaagccgatcgttgaggaaactgggatcctcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacactgcccattgcctgaaagacgtttcaattgcttgattcctcctccagcaggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaacatgctgaaatttccgaacaataacttgaacaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88082" stop="86513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87782" g_stop="87637" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="311" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="494" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86813" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="531" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E464164" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87782" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAG</genome_strand>
        <mrna_strand>CTGCTTTAGAGTATGGAAGCCGATCGTTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACACTGCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCAGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAC...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287993" ref_strand="+" ref_description="SGN-E287993 [cLES-7-M2]">
      <seq>tgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacattgtccattgcctgaaagacgtttcaattgcttgattcctcctccagctggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcaaacataccacatactcaccttgcacatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaatatgctgaaatttccgaacaataacttgaacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88081" stop="86515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87781" g_stop="87637" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="310" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="493" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86849" g_stop="86815" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="528" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E287993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87781" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGG</genome_strand>
        <mrna_strand>TGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437241" ref_strand="+" ref_description="SGN-E437241 [cSTA-3-K7]">
      <seq>atgacttctaagaactgaaggggaagggtgaaggtgaagcttttttgaagattctaaaactaccacaaatgatgccgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcaatcttttttgttgtcctgtatttttattttggctctaagagcaacggtgaatctgctttagagtatggaagccgatcgttgaggaaactgggatcctcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacactgcccattgcctgaaagacgtttcaattgcttgattcctcctccagcaggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcgaacataccacatactcaccttgctcatgagaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88268" stop="86782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87968" g_stop="87637" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="498" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87163" g_stop="87082" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="580" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E437241" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87968" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="87082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTA-CACAAATGATG-CGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTG</genome_strand>
        <mrna_strand>ATGACTTCTAAGAACTGAAGGGG-AAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACCACAAATGATGCCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCAATCTTTTTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAATCTGCTTTAGAGTATGGAAGCCGATCGTTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACACTGCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCAGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCGAACATACCACATACTCACCTTGCTCATGAGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326852" ref_strand="+" ref_description="SGN-E326852 [cTOC-25-O21]">
      <seq>ttgtttttcttgacacgtcctattattctcgatttgtaaaacttactcatttctccaatttcagatctgcacctattctgctcaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgaaatctgttacgttcgggatcttggagctaactggtccacctaagcaatgacttctaagaattgaaggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttggtgcactctttgttggtgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttaacagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccaggttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacattgtccattgcctgacagacggttcaattgcttgattcctcctccagctggatacaacgtaccgattaagtggccaagaaatagacatgatgtttggaatggcaacataccacatactcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90489" stop="86797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90189" g_stop="90100" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87637" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="519" r_length="429" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="684" r_length="165" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87163" g_stop="87097" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="751" r_length="67" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E326852" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90189" e_stop="90100"/>
          <exon e_start="88065" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="87097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTG</genome_strand>
        <mrna_strand>TTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGGTGCACTCTTTGTTGGTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAACAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GGTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGACAGACGGTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAC...........................................................................................................................GTACCGATTAAGTGGCCAAGAAATAGACATGATGTTTGGAATGGCAACATACCACATACTCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736381" ref_strand="+" ref_description="SGN-E736381 [LC05CC12]">
      <seq>cggttttccattctctttctctccatcatacacttaactattttcttgtttttcttgacacgtcctattattctcgatttgtaaaacttactcatttctccaatttcagatctgcacctattctgctcaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgaaatctgttacgttcgggatcttggagctaactggtccacctaagcaatgacttctaagaattgaaggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcactctttgttgttgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacattgtccattgcctgaaagacgtttcaattgcttgattcctcctccagctggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcaaacataccacatactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90532" stop="86800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90234" g_stop="90100" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87637" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="564" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="729" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87163" g_stop="87100" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="793" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E736381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90234" e_stop="90100"/>
          <exon e_start="88065" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="87100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACC</genome_strand>
        <mrna_strand>CGGTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321558" ref_strand="+" ref_description="SGN-E321558 [cTOB-25-I1]">
      <seq>ttttcttgtttttcttgacacgtcctattattctcgatttgtaaaacttactcatttctccaatttcagatctgcacctattctgctcaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgaaatctgttacgttcgggatcttggagctaactggtccacctaagcaatgacttctaagaattgaaggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcactctttgttgttgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctgggatctacattnatggagcactatgaaagacattgtcccattgcctgaaagacgtttcaattgcttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90494" stop="87007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90194" g_stop="90100" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87637" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="524" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87451" g_stop="87307" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="670" r_length="146" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E321558" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90194" e_stop="90100"/>
          <exon e_start="88065" e_stop="87637"/>
          <exon e_start="87451" e_stop="87307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCT-GGATCTAACATTAATGGAGCACTATGAAAGACATTGT-CCATTGCCTGAAAGACGTTTCAATTGCTTGATTC</genome_strand>
        <mrna_strand>TTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGGATCT-ACATTNATGGAGCACTATGAAAGACATTGTCCCATTGCCTGAAAGACGTTTCAATTGCTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464396" ref_strand="+" ref_description="SGN-E464396 [cPRO-17-L2]">
      <seq>ctgctttagagtatggaagccgatcgttgaggaaactgggatcctcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="88082" stop="87069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87782" g_stop="87637" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87451" g_stop="87369" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="229" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E464396" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87782" e_stop="87637"/>
          <exon e_start="87451" e_stop="87369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAAC</genome_strand>
        <mrna_strand>CTGCTTTAGAGTATGGAAGCCGATCGTTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451288" ref_strand="+" ref_description="SGN-E451288 [cSTS-12-E12]">
      <seq>cacttacccatttctcctccaatttcagatctgcaactattctgctccaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttgtgcaatctgttacgttcgggatcttggagctaactggcccacctaagcaatgacttctaagaactgaaagggaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcaatcttttttgttgtcctgtatttttattttggctctaagagcaacggtgaatctgctttagagtatggaagccgatcgttgaggaaactgggatcctcgtatttgggtggagatgatgagtctgatcttatcagcaagcaagatgagaagtttgggctggaagatggtgaatatggcatcgtttctaagagcttcccagtttgcgatgatcgacaatcggaggtaattccctgtctggacaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90449" stop="87105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90137" g_stop="90100" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="55" r_length="39" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87637" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="483" r_length="428" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87451" g_stop="87405" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="530" r_length="47" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E451288" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90137" e_stop="90100"/>
          <exon e_start="88065" e_stop="87637"/>
          <exon e_start="87451" e_stop="87405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCAATTTCAGATCTGCACCTATTCTGCT-CAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCA</genome_strand>
        <mrna_strand>CTCCAATTTCAGATCTGCAACTATTCTGCTCCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTGTGCAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGCCCACCTAAGCAATGACTTCTAAGAACTGAAAGGG-AAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCAATCTTTTTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAATCTGCTTTAGAGTATGGAAGCCGATCGTTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGAGTCTGATCTTATCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAATATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACAATCGGAGGTAATTCCCTGTCTGGACAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568903" ref_strand="+" ref_description="SGN-E568903 [13259]">
      <seq>ctgtcacaatttgtatcacttacccattttcctccaatttcagatctgcaactattctgctccaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttgtgcaatctgttacgttcgggatcttggagctaactggcccacctaagcaatgacttctaagaactgaaggggaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcaatcttttttgttgtcctgtatttttattttggctctaagagcaacggtgaatctgctttagagtatggaagccgatcgttgaggaaactgggatcctcgtatttgggtggagatgatgagtctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90463" stop="87356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90166" g_stop="90100" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.776"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="0.83"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87656" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="479" r_length="409" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E568903" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90166" e_stop="90100"/>
          <exon e_start="88065" e_stop="87656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTCGATTTGTAAAACTTACTCATT-T-CTCCAATTTCAGATCTGCACCTATTCTGCT-CAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCAT</genome_strand>
        <mrna_strand>CTGTCACAATTTGTATCACTTACCCATTTTCCTCCAATTTCAGATCTGCAACTATTCTGCTCCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTGTGCAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGCCCACCTAAGCAATGACTTCTAAGAACTGAAGGGG-AAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCAATCTTTTTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAATCTGCTTTAGAGTATGGAAGCCGATCGTTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGAGTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216588" ref_strand="+" ref_description="SGN-E216588 [cLEL-1-N17](-)">
      <seq>accatcttccagcccaaacttctcatcttgcttgttgctaagatcagagtcatcatctccacccaaatacgaggatcgcagtttcctcaatgatcggcttccatactctaaagcagactcaccgttgctcttagagccaaaataataatacaggacaacaacagatagtgcaacaacagctacagaagtcaacaagcgcttcttctgcgctccatctgatctccctcgcatcatttgtgtagttttagaatcttcaacaaagcttcaccttcaccctttccccttcaattcttagaagtcattgcttaggtggaccagttagctccgagatcccgaacgtaacagatttcaaaaattagattctgaaggaagatggatttcttctagtaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="87367" stop="88354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87667" g_stop="88059" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E216588" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87667" e_stop="88059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATCTTCCAGCCCAAACTTCTCATCTTGCTTGCTGCTAAGATCAGAGTCATCATCTCCACCCAAATACGAGGATCCCAGTTTCCTCAATGATCGGCTTCCATACTCTAAAGCAGACTCACCGTTGCTCTTAGAGCCAAAATAAAAATACAGGACAACAACAAAGAGTGCAACAACAGCTACAGAAGTCAACAAGCGCTTCTTCTGCGCTCCATCTGATCTCCCTCGCATCATTTGTGTAGTTTTAGAATCTTCAAAAAAGCTTCACCTTCACCCTTTCCCCTTCAATTCTTAGAAGTCATTGCTTAGGTGGACCAGTTAGCTCCAAGATCCCGAACGTAACAGATTTCAGAAATTAGATTCTGAAGGAAGATGGATTTCTTCTATTGGTGA</genome_strand>
        <mrna_strand>ACCATCTTCCAGCCCAAACTTCTCATCTTGCTTGTTGCTAAGATCAGAGTCATCATCTCCACCCAAATACGAGGATCGCAGTTTCCTCAATGATCGGCTTCCATACTCTAAAGCAGACTCACCGTTGCTCTTAGAGCCAAAATAATAATACAGGACAACAACAGATAGTGCAACAACAGCTACAGAAGTCAACAAGCGCTTCTTCTGCGCTCCATCTGATCTCCCTCGCATCATTTGTGTAGTTTTAGAATCTTCAACAAAGCTTCACCTTCACCCTTTCCCCTTCAATTCTTAGAAGTCATTGCTTAGGTGGACCAGTTAGCTCCGAGATCCCGAACGTAACAGATTTCAAAAATTAGATTCTGAAGGAAGATGGATTTCTTCTAGTAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363906" ref_strand="+" ref_description="SGN-E363906 [cLPT-10-J20]">
      <seq>atttgtaaaacgtactcttttctccaatttcagatctgcatctattctgctgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgcaatctgttaggttcgggatcttggagctaactggtccacctaagcaatgacttctaagaactgaaggggaaagggtgaaggtgaagcttttttaaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttattgacttctgtagctgttgttgcactctttgttgttgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctggaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90458" stop="87370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90158" g_stop="90108" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90107" i_stop="88066" i_length="2042">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87670" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="447" r_length="396" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E363906" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90158" e_stop="90108"/>
          <exon e_start="88065" e_stop="87670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGAT</genome_strand>
        <mrna_strand>ATTTGTAAAACGTACTCTTTTCTCCAATTTCAGATCTGCATCTATTCTGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGCAATCTGTTAGGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAACTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTAAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTATTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331790" ref_strand="+" ref_description="SGN-E331790 [cTOD-7-A2]">
      <seq>ttttcttgtttttcttgacacgtcctattattctcgatttgtaaaacttactcatttctccaatttcagatctgcacctattctgctcaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgaaatctgttacgttcgggatcttggagctaactggtccacctaagcaatgacttctaagaattgaaggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcactctttgttgttgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90494" stop="87374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90194" g_stop="90100" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87674" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="487" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E331790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90194" e_stop="90100"/>
          <exon e_start="88065" e_stop="87674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGA</genome_strand>
        <mrna_strand>TTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260336" ref_strand="+" ref_description="SGN-E260336 [cLEG-53-B7]">
      <seq>aaaacttactcatttctccaatttcagatctgcacctattctgctcaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgaaatctgttacgttcgggatcttggagctaactggtccacctaagcaatgacttctaagaattgaaggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcaaaaaaaacgcttgttgacttctgtagctgttgttgcactctttgttgttggcctggatttttattttggctctaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90452" stop="87493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90152" g_stop="90100" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87793" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="326" r_length="273" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E260336" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90152" e_stop="90100"/>
          <exon e_start="88065" e_stop="87793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGC</genome_strand>
        <mrna_strand>AAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAAAAAAAACGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGGCCTGGATTTTTATTTTGGCTCTAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="97517" stop="96682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97217" g_stop="96980" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97217" e_stop="96980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGAGAACTAATGAATA-TGAGGGAGCGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="104883" stop="96762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97955" g_stop="97449" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97448" i_stop="97274" i_length="175">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97273" g_stop="97062" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="717" r_length="212" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97955" e_stop="97449"/>
          <exon e_start="97273" e_stop="97062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAAAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATC-TGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGAGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCAACACGTAGTATTAAGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG-GTGTCACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGAGAACTAATGAATATGAGGGAGCGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGATTAAGG-GATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACAC...............................................................................................................................................................................GTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="99021" stop="99798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99321" g_stop="99497" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99321" e_stop="99497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="100502" stop="101813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100802" g_stop="101513" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100802" e_stop="101513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAACTCCTTATTTCTGACACATAAGTAGGTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGT-ATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="100502" stop="101696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100802" g_stop="101396" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100802" e_stop="101396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAACTCCTTATTTCTGACACATAAGTAGGTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGT-ATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="100502" stop="101626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100802" g_stop="101326" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100802" e_stop="101326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAACTCCTTATTTCTGACACATAAGTAGGTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGT-ATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="100573" stop="101850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100873" g_stop="101551" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100873" e_stop="101551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGT-ATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="100573" stop="101531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100873" g_stop="101231" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100873" e_stop="101231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="+" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="101109" stop="102373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101373" g_stop="102073" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101373" e_stop="102073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTAGTGGCATACCAAGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACGATTCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCCGAAATCCGTAGTTCTAACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTAGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATCTT--T-AC-AACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="101677" stop="102995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101977" g_stop="102695" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101977" e_stop="102695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTAGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTC-AAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAATTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGTCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="101680" stop="102942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101980" g_stop="102642" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101980" e_stop="102642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTAGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTC-AAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAATTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="102999" stop="101846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102699" g_stop="102146" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102699" e_stop="102146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGACCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAATTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="102034" stop="103067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102334" g_stop="102766" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102334" e_stop="102766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="103358" stop="102473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103058" g_stop="102773" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103058" e_stop="102773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTTTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="104143" stop="96439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103843" g_stop="103366" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103843" e_stop="103366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGATACATAGATTAAGGGGATCAGAGTGTCACGTACCGACACAAGAGAACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTG-TTTGTACTGACCCCCTACTTTTATGTTTTCTCCTTTGTTATTTGTGGAGTGTAGCAAACGTGCCATCGTCTTCAACTCAACCGCAACTCTTGCCAGTCTTCATTATTCCGGATATCTGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGA-CCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="104144" stop="103309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103844" g_stop="103607" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103844" e_stop="103607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGATACATAGATTAAGGGGATCAGAGTGTCACGTACCGACACAAGAGAACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="104883" stop="103881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104583" g_stop="104180" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104583" e_stop="104180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAAGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>150</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1374" PGL_stop="426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1374" e_stop="426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="1374" e_stop="426" e_length="949"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1374" stop="944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="977" stop="426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAAGTAAGCTGCATGAGAAGCTTGCGTTCTTGGAAGGAAAAGTGAAGAGGATTGCAACTGATATTAAGAGGACTAAGGAGATGTTGGATATGAATAATCCTGATTCTTCTAAGTTGATAATTTCTGATATCCAAGAGAAGATATCCGGGATTGAGAAGGCAATGGGTAATGTAGTTGATGGGGATGAAAAAATAGGTTTGACGAGTAGCAGTAAAAATGAGAGTTTGAATGTTGATGAGAAGATATGTGGGATTGAGAAGGGGATGTGTAATATAGTGGATGGGGATAGAGAAATTGGTTTGCTGGGTAGCATTAGCAGTGAGGACATGATTATTGATGAGAAGGAAACAATACCTGAGGATAATGGGAAAATCTCTGTGAAGGGATTAAATGTAGAGGAATTAGAGGCAAGGTTGTTCCCTCATCATAAATTGCTACGAGACAGGACATCTCTGAAGACACTAATGGGCTGTACCAAAAATGAGGAACTTGGATCTGCTGAATCAACTATTGAAGTGAAGCCCGAGAAGAATTATGTTAGTCCTATTGATGAGAATCCTATTGCTGTGGAGTTCTTGGCTTCTCTTAGTAAGGAGCAGTCTAAAGTTACTACTAGGTGTGAGGATGCTTGTTTACAGATTTCCAATGTTCAAGATGTGGATGATGCAGTAAGTTCACAAAACCAAAATTCTTCTTCAGAACTGTTCAAAGGAAAAGAAATTGTTGATCATCTCCTGGCAAGTGATGAGAGGCTTGAAAGTTTTGATGCTCAAGAGAATAAACAAGAAATGTTGATGGAGGAAGAGACAGAAGATAGTTCTATATGTGAACTCAATGAGATTGGCCGTAAGACATCTACTGGAGGGTGGTTTGTCTCTGAGGGAGAATCTGTTCTCCTTACACATGATGACAGTTCCTGCTCTTTCTATGATATTGTGCATTGCGAG</gDNA_template>
            <first_frame> P  K  *  A  A  *  E  A  C  V  L  G  R  K  S  E  E  D  C  N  *  Y  *  E  D  *  G  D  V  G  Y  E  *  S  *  F  F  *  V  D  N  F  *  Y  P  R  E  D  I  R  D  *  E  G  N  G  *  C  S  *  W  G  *  K  N  R  F  D  E  *  Q  *  K  *  E  F  E  C  *  *  E  D  M  W  D  *  E  G  D  V  *  Y  S  G  W  G  *  R  N  W  F  A  G  *  H  *  Q  *  G  H  D  Y  *  *  E  G  N  N  T  *  G  *  W  E  N  L  C  E  G  I  K  C  R  G  I  R  G  K  V  V  P  S  S  *  I  A  T  R  Q  D  I  S  E  D  T  N  G  L  Y  Q  K  *  G  T  W  I  C  *  I  N  Y  *  S  E  A  R  E  E  L  C  *  S  Y  *  *  E  S  Y  C  C  G  V  L  G  F  S  *  *  G  A  V  *  S  Y  Y  *  V  *  G  C  L  F  T  D  F  Q  C  S  R  C  G  *  C  S  K  F  T  K  P  K  F  F  F  R  T  V  Q  R  K  R  N  C  *  S  S  P  G  K  *  *  E  A  *  K  F  *  C  S  R  E  *  T  R  N  V  D  G  G  R  D  R  R  *  F  Y  M  *  T  Q  *  D  W  P  *  D  I  Y  W  R  V  V  C  L  *  G  R  I  C  S  P  Y  T  *  *  Q  F  L  L  F  L  *  Y  C  A  L  R  </first_frame>
            <second_frame>  P  S  K  L  H  E  K  L  A  F  L  E  G  K  V  K  R  I  A  T  D  I  K  R  T  K  E  M  L  D  M  N  N  P  D  S  S  K  L  I  I  S  D  I  Q  E  K  I  S  G  I  E  K  A  M  G  N  V  V  D  G  D  E  K  I  G  L  T  S  S  S  K  N  E  S  L  N  V  D  E  K  I  C  G  I  E  K  G  M  C  N  I  V  D  G  D  R  E  I  G  L  L  G  S  I  S  S  E  D  M  I  I  D  E  K  E  T  I  P  E  D  N  G  K  I  S  V  K  G  L  N  V  E  E  L  E  A  R  L  F  P  H  H  K  L  L  R  D  R  T  S  L  K  T  L  M  G  C  T  K  N  E  E  L  G  S  A  E  S  T  I  E  V  K  P  E  K  N  Y  V  S  P  I  D  E  N  P  I  A  V  E  F  L  A  S  L  S  K  E  Q  S  K  V  T  T  R  C  E  D  A  C  L  Q  I  S  N  V  Q  D  V  D  D  A  V  S  S  Q  N  Q  N  S  S  S  E  L  F  K  G  K  E  I  V  D  H  L  L  A  S  D  E  R  L  E  S  F  D  A  Q  E  N  K  Q  E  M  L  M  E  E  E  T  E  D  S  S  I  C  E  L  N  E  I  G  R  K  T  S  T  G  G  W  F  V  S  E  G  E  S  V  L  L  T  H  D  D  S  S  C  S  F  Y  D  I  V  H  C  E </second_frame>
            <third_frame>   Q  V  S  C  M  R  S  L  R  S  W  K  E  K  *  R  G  L  Q  L  I  L  R  G  L  R  R  C  W  I  *  I  I  L  I  L  L  S  *  *  F  L  I  S  K  R  R  Y  P  G  L  R  R  Q  W  V  M  *  L  M  G  M  K  K  *  V  *  R  V  A  V  K  M  R  V  *  M  L  M  R  R  Y  V  G  L  R  R  G  C  V  I  *  W  M  G  I  E  K  L  V  C  W  V  A  L  A  V  R  T  *  L  L  M  R  R  K  Q  Y  L  R  I  M  G  K  S  L  *  R  D  *  M  *  R  N  *  R  Q  G  C  S  L  I  I  N  C  Y  E  T  G  H  L  *  R  H  *  W  A  V  P  K  M  R  N  L  D  L  L  N  Q  L  L  K  *  S  P  R  R  I  M  L  V  L  L  M  R  I  L  L  L  W  S  S  W  L  L  L  V  R  S  S  L  K  L  L  L  G  V  R  M  L  V  Y  R  F  P  M  F  K  M  W  M  M  Q  *  V  H  K  T  K  I  L  L  Q  N  C  S  K  E  K  K  L  L  I  I  S  W  Q  V  M  R  G  L  K  V  L  M  L  K  R  I  N  K  K  C  *  W  R  K  R  Q  K  I  V  L  Y  V  N  S  M  R  L  A  V  R  H  L  L  E  G  G  L  S  L  R  E  N  L  F  S  L  H  M  M  T  V  P  A  L  S  M  I  L  C  I  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1373" stop="426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSKLHEKLAFLEGKVKRIATDIKRTKEMLDMNNPDSSKLIISDIQEKISGIEKAMGNVVDGDEKIGLTSSSKNESLNVDEKICGIEKGMCNIVDGDREIGLLGSISSEDMIIDEKETIPEDNGKISVKGLNVEELEARLFPHHKLLRDRTSLKTLMGCTKNEELGSAESTIEVKPEKNYVSPIDENPIAVEFLASLSKEQSKVTTRCEDACLQISNVQDVDDAVSSQNQNSSSELFKGKEIVDHLLASDERLESFDAQENKQEMLMEEETEDSSICELNEIGRKTSTGGWFVSEGESVLLTHDDSSCSFYDIVHCE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="3622" PGL_stop="2918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3622" e_stop="2918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3622" e_stop="2918" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3622" stop="2918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352422" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTTTAGCTTCTTTACTACTCATGTACCACAAGATAGTGAATTTTCCATAAGACAATGACCAACAGTCAAGATAAAAAACCAAACATACACCCATCAATGACAACATATAGGTAAGCAACAACATTCAGATAAATTCAAGAAAATAACAAAAGGGGATCAAAAAGATTAGATTTTTAAGTACCAATAACTTGAGTTTGAGAGACCCAATAAGCTCCGCTTCAGCTTCTTTACTACCAGGTGGCTCAATAAAAGTGACTTCATCAATACCCGACTGGCAAACTAAACTTCTCTTGCTGTCATAGCTCCTTTCCTCTAATAATCTTTGAGTACTTCTCTTGCTTCTTCCTGGGAGATGACATGGGAAAGATTGGCAAGAATTTGATAAAGAATGATTGTGAGAAAGGGGAAGTCTCGAATGAAGTAGAGAAGCCATGGTTGAGCTTGAATTTCAGAAAAAAGGATCGATCTTTTGTGGAGTTTGATTGGTGGTGTAGTTGTAGTAACAAATCTACATTTTTCTAGTTTTGTGTTGAATAAAAAAGCTAAGGGACCCATTTCCTTCTTTCCCTTTTCTTTTATTCGGTGTCTCGTATTCATATTTAAAACGATTAAATTTAAAAATTTCATATTAAAAATTATAAAACCTCTATAACAAAGATATTCGAATTGAAATCTCTAATGAAAAATAAAATACTATTATATA</gDNA_template>
            <first_frame> S  F  S  F  F  T  T  H  V  P  Q  D  S  E  F  S  I  R  Q  *  P  T  V  K  I  K  N  Q  T  Y  T  H  Q  *  Q  H  I  G  K  Q  Q  H  S  D  K  F  K  K  I  T  K  G  D  Q  K  D  *  I  F  K  Y  Q  *  L  E  F  E  R  P  N  K  L  R  F  S  F  F  T  T  R  W  L  N  K  S  D  F  I  N  T  R  L  A  N  *  T  S  L  A  V  I  A  P  F  L  *  *  S  L  S  T  S  L  A  S  S  W  E  M  T  W  E  R  L  A  R  I  *  *  R  M  I  V  R  K  G  K  S  R  M  K  *  R  S  H  G  *  A  *  I  S  E  K  R  I  D  L  L  W  S  L  I  G  G  V  V  V  V  T  N  L  H  F  S  S  F  V  L  N  K  K  A  K  G  P  I  S  F  F  P  F  S  F  I  R  C  L  V  F  I  F  K  T  I  K  F  K  N  F  I  L  K  I  I  K  P  L  *  Q  R  Y  S  N  *  N  L  *  *  K  I  K  Y  Y  Y  I </first_frame>
            <second_frame>  A  L  A  S  L  L  L  M  Y  H  K  I  V  N  F  P  *  D  N  D  Q  Q  S  R  *  K  T  K  H  T  P  I  N  D  N  I  *  V  S  N  N  I  Q  I  N  S  R  K  *  Q  K  G  I  K  K  I  R  F  L  S  T  N  N  L  S  L  R  D  P  I  S  S  A  S  A  S  L  L  P  G  G  S  I  K  V  T  S  S  I  P  D  W  Q  T  K  L  L  L  L  S  *  L  L  S  S  N  N  L  *  V  L  L  L  L  L  P  G  R  *  H  G  K  D  W  Q  E  F  D  K  E  *  L  *  E  R  G  S  L  E  *  S  R  E  A  M  V  E  L  E  F  Q  K  K  G  S  I  F  C  G  V  *  L  V  V  *  L  *  *  Q  I  Y  I  F  L  V  L  C  *  I  K  K  L  R  D  P  F  P  S  F  P  F  L  L  F  G  V  S  Y  S  Y  L  K  R  L  N  L  K  I  S  Y  *  K  L  *  N  L  Y  N  K  D  I  R  I  E  I  S  N  E  K  *  N  T  I  I   </second_frame>
            <third_frame>   L  *  L  L  Y  Y  S  C  T  T  R  *  *  I  F  H  K  T  M  T  N  S  Q  D  K  K  P  N  I  H  P  S  M  T  T  Y  R  *  A  T  T  F  R  *  I  Q  E  N  N  K  R  G  S  K  R  L  D  F  *  V  P  I  T  *  V  *  E  T  Q  *  A  P  L  Q  L  L  Y  Y  Q  V  A  Q  *  K  *  L  H  Q  Y  P  T  G  K  L  N  F  S  C  C  H  S  S  F  P  L  I  I  F  E  Y  F  S  C  F  F  L  G  D  D  M  G  K  I  G  K  N  L  I  K  N  D  C  E  K  G  E  V  S  N  E  V  E  K  P  W  L  S  L  N  F  R  K  K  D  R  S  F  V  E  F  D  W  W  C  S  C  S  N  K  S  T  F  F  *  F  C  V  E  *  K  S  *  G  T  H  F  L  L  S  L  F  F  Y  S  V  S  R  I  H  I  *  N  D  *  I  *  K  F  H  I  K  N  Y  K  T  S  I  T  K  I  F  E  L  K  S  L  M  K  N  K  I  L  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3365" stop="3099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQYPTGKLNFSCCHSSFPLIIFEYFSCFFLGDDMGKIGKNLIKNDCEKGEVSNEVEKPWLSLNFRKKDRSFVEFDWWCSCSNKSTFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3175" stop="2969"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEKRIDLLWSLIGGVVVVTNLHFSSFVLNKKAKGPISFFPFSFIRCLVFIFKTIKFKNFILKIIKPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="3129" PGL_stop="9247"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3129" e_stop="3439"/>
            <exon e_start="6270" e_stop="6506"/>
            <exon e_start="7064" e_stop="7190"/>
            <exon e_start="7310" e_stop="7719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="0.996"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.772" e_score="1.000"/>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="3129" e_stop="3439" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6270" e_stop="6506" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7064" e_stop="7190" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.772">
            <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="0.959">
            <gDNA_exon_boundary e_start="7310" e_stop="7719" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3129" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3129" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3135" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3150" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3154" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3154" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3154" stop="3439"/>
              <exon start="6270" stop="6402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3156" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="3439"/>
              <exon start="6270" stop="6363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3174" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3179" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3180" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3181" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3190" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3200" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3241" stop="3439"/>
              <exon start="6270" stop="6450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6419" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7072" stop="7190"/>
              <exon start="7310" stop="7695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412927" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7154" stop="7190"/>
              <exon start="7310" stop="7695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7161" stop="7190"/>
              <exon start="7310" stop="7685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG : AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG : GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG : GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGACATCTGATGGACTTGTGCAGTGAGATTTCAAAAAT</gDNA_template>
            <first_frame> T  P  P  I  K  L  H  K  R  S  I  L  F  S  E  I  Q  A  Q  P  W  L  L  Y  F  I  R  D  F  P  F  L  T  I  I  L  Y  Q  I  L  A  N  L  S  H  V  I  S  Q  E  E  A  R  E  V  L  K  D  Y  *  R  K  G  A  M  T  A  R  E  V  *  F  A  S  R  V  L  M  K  S  L  L  L  S  H  L  V  V  K  K  L  K  R  S  L  L  G  L  S  N  S  S  Y  * :   V  L  F  L  G  *  T  E  V  L  L  Q  V  K  M  I  *  R  R  R  M  R  L  P  R  S  *  N  L  V  Q  E  L  *  I  S  Q  L  I  L  I  N  F  K  G  G  G  N  *  Y  T  A  V  H  S  H  L  V  L  L  V  E  V  V  L  D  P  P  L  E  D  F  F  P  S  L  L  V  R :   Y  F  K  E  S  M  Y  *  A  K  I  L  T  T  *  W  S  L  N  *  V  L  R  G  L  S  R  L  L  K  Q  L  P  L  *  P  T  N  L  N  L  *  :  D  H  L  R  L  R  L  Y  S  R  K  L  Q  *  R  Q  L  E  I  Y  H  S  S  H  H  *  K  C  L  A  Y  Q  I  S  S  G  H  H  Q  I  Q  E  V  V  S  L  K  L  P  T  S  I  L  I  H  E  *  Q  G  E  T  E  E  S  L  E  F  S  L  S  H  K  L  S  C  N  E  Y  S  L  P  T  M  F  C  C  Y  N  F  M  *  Q  H  I  K  C  V  D  M  L  N  I  I  L  L  V  T  A  I  K  S  V  M  L  L  Q  I  Q  I  C  I  Q  *  I  *  H  L  M  D  L  C  S  E  I  S  K   </first_frame>
            <second_frame>  H  H  Q  S  N  S  T  K  D  R  S  F  F  L  K  F  K  L  N  H  G  F  S  T  S  F  E  T  S  P  F  S  Q  S  F  F  I  K  F  L  P  I  F  P  M  S  S  P  R  K  K  Q  E  K  Y  S  K  I  I  R  G  K  E  L  *  Q  Q  E  K  F  S  L  P  V  G  Y  *  *  S  H  F  Y  *  A  T  W  *  *  R  S  *  S  G  A  Y  W  V  S  Q  T  Q  V  I   : E  C  C  F  W  A  K  Q  R  S  C  C  K  *  R  *  S  K  E  G  G  *  G  C  Q  G  A  R  I  L  C  R  S  C  R  S  R  S  *  S  *  *  T  S  R  E  V  E  I  D  I  Q  Q  C  I  L  I  S  Y  S  W  W  K  S  S  W  T  P  H  W  K  T  S  S  H  H  S  W  S   : G  I  S  K  N  R  C  T  E  Q  R  F  *  Q  H  S  G  A  *  I  R  C  S  V  A  F  P  A  C  *  S  N  C  H  F  S  P  Q  I  *  T  Y  R :   I  I  Y  D  *  D  Y  I  R  E  N  Y  S  E  D  N  W  K  F  I  T  A  P  T  I  R  S  A  S  H  T  R  S  V  Q  A  T  I  K  Y  R  K  W  *  V  *  S  Y  L  H  R  F  *  Y  T  S  N  K  G  R  Q  R  R  A  *  S  F  R  Y  L  I  S  *  A  A  M  N  I  V  F  L  Q  C  F  V  A  T  I  S  C  N  N  I  S  N  V  *  I  C  S  T  L  F  C  W  S  Q  L  S  N  L  *  C  Y  C  K  F  K  S  V  Y  S  K  F  D  I  *  W  T  C  A  V  R  F  Q  K  </second_frame>
            <third_frame>   T  T  N  Q  T  P  Q  K  I  D  P  F  F  *  N  S  S  S  T  M  A  S  L  L  H  S  R  L  P  L  S  H  N  H  S  L  S  N  S  C  Q  S  F  P  C  H  L  P  G  R  S  K  R  S  T  Q  R  L  L  E  E  R  S  Y  D  S  K  R  S  L  V  C  Q  S  G  I  D  E  V  T  F  I  E  P  P  G  S  K  E  A  E  A  E  L  I  G  S  L  K  L  K  L  L  :  S  A  V  S  G  L  N  R  G  L  A  A  S  E  D  D  L  K  K  A  D  E  A  A  K  E  L  E  S  C  A  G  A  V  D  L  A  A  D  L  D  K  L  Q  G  R  W  K  L  I  Y  S  S  A  F  S  S  R  T  L  G  G  S  R  P  G  P  P  T  G  R  L  L  P  I  T  L  G  Q  :  V  F  Q  R  I  D  V  L  S  K  D  F  D  N  I  V  E  L  E  L  G  A  P  W  P  F  P  P  V  E  A  T  A  T  L  A  H  K  F  E  L  I   : G  S  S  T  I  K  I  I  F  E  K  T  T  V  K  T  T  G  N  L  S  Q  L  P  P  L  E  V  P  R  I  P  D  Q  F  R  P  P  S  N  T  G  S  G  E  F  E  V  T  Y  I  D  S  D  T  R  V  T  R  G  D  R  G  E  L  R  V  F  V  I  S  *  V  K  L  Q  *  I  *  S  S  Y  N  V  L  L  L  Q  F  H  V  T  T  Y  Q  M  C  R  Y  A  Q  H  Y  S  A  G  H  S  Y  Q  I  C  N  A  T  A  N  S  N  L  Y  T  V  N  L  T  S  D  G  L  V  Q  *  D  F  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3173" stop="3439"/>
                    <exon start="6270" stop="6506"/>
                    <exon start="7064" stop="7190"/>
                    <exon start="7310" stop="7524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSTMASLLHSRLPLSHNHSLSNSCQSFPCHLPGRSKRSTQRLLEERSYDSKRSLVCQSGIDEVTFIEPPGSKEAEAELIGSLKLKLLSAVSGLNRGLAASEDDLKKADEAAKELESCAGAVDLAADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELELGAPWPFPPVEATATLAHKFELIGSSTIKIIFEKTTVKTTGNLSQLPPLEVPRIPDQFRPPSNTGSGEFEVTYIDSDTRVTRGDRGELRVFVIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="3129" e_stop="3439"/>
            <exon e_start="6270" e_stop="6506"/>
            <exon e_start="7064" e_stop="7190"/>
            <exon e_start="7310" e_stop="7684"/>
            <exon e_start="9230" e_stop="9247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.685" e_score="0.968"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="3129" e_stop="3439" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6270" e_stop="6506" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7064" e_stop="7190" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.772">
            <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="7310" e_stop="7684" e_length="375"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.685">
            <gDNA_intron_boundary i_start="7685" i_stop="9229" i_length="1545"/>
          </intron>
          <exon e_serial="5" e_score="0.722">
            <gDNA_exon_boundary e_start="9230" e_stop="9247" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3129" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3135" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3150" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3154" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3154" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3154" stop="3439"/>
              <exon start="6270" stop="6402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3171" stop="3439"/>
              <exon start="6270" stop="6363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3174" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3179" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3180" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3181" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3190" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3200" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3241" stop="3439"/>
              <exon start="6270" stop="6450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7158" stop="7190"/>
              <exon start="7310" stop="7684"/>
              <exon start="9230" stop="9247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG : AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG : GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG : GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGA : CTGAAAAAAAAGAATCAA</gDNA_template>
            <first_frame> T  P  P  I  K  L  H  K  R  S  I  L  F  S  E  I  Q  A  Q  P  W  L  L  Y  F  I  R  D  F  P  F  L  T  I  I  L  Y  Q  I  L  A  N  L  S  H  V  I  S  Q  E  E  A  R  E  V  L  K  D  Y  *  R  K  G  A  M  T  A  R  E  V  *  F  A  S  R  V  L  M  K  S  L  L  L  S  H  L  V  V  K  K  L  K  R  S  L  L  G  L  S  N  S  S  Y  * :   V  L  F  L  G  *  T  E  V  L  L  Q  V  K  M  I  *  R  R  R  M  R  L  P  R  S  *  N  L  V  Q  E  L  *  I  S  Q  L  I  L  I  N  F  K  G  G  G  N  *  Y  T  A  V  H  S  H  L  V  L  L  V  E  V  V  L  D  P  P  L  E  D  F  F  P  S  L  L  V  R :   Y  F  K  E  S  M  Y  *  A  K  I  L  T  T  *  W  S  L  N  *  V  L  R  G  L  S  R  L  L  K  Q  L  P  L  *  P  T  N  L  N  L  *  :  D  H  L  R  L  R  L  Y  S  R  K  L  Q  *  R  Q  L  E  I  Y  H  S  S  H  H  *  K  C  L  A  Y  Q  I  S  S  G  H  H  Q  I  Q  E  V  V  S  L  K  L  P  T  S  I  L  I  H  E  *  Q  G  E  T  E  E  S  L  E  F  S  L  S  H  K  L  S  C  N  E  Y  S  L  P  T  M  F  C  C  Y  N  F  M  *  Q  H  I  K  C  V  D  M  L  N  I  I  L  L  V  T  A  I  K  S  V  M  L  L  Q  I  Q  I  C  I  Q  *  I  *  :  L  K  K  K  N  Q </first_frame>
            <second_frame>  H  H  Q  S  N  S  T  K  D  R  S  F  F  L  K  F  K  L  N  H  G  F  S  T  S  F  E  T  S  P  F  S  Q  S  F  F  I  K  F  L  P  I  F  P  M  S  S  P  R  K  K  Q  E  K  Y  S  K  I  I  R  G  K  E  L  *  Q  Q  E  K  F  S  L  P  V  G  Y  *  *  S  H  F  Y  *  A  T  W  *  *  R  S  *  S  G  A  Y  W  V  S  Q  T  Q  V  I   : E  C  C  F  W  A  K  Q  R  S  C  C  K  *  R  *  S  K  E  G  G  *  G  C  Q  G  A  R  I  L  C  R  S  C  R  S  R  S  *  S  *  *  T  S  R  E  V  E  I  D  I  Q  Q  C  I  L  I  S  Y  S  W  W  K  S  S  W  T  P  H  W  K  T  S  S  H  H  S  W  S   : G  I  S  K  N  R  C  T  E  Q  R  F  *  Q  H  S  G  A  *  I  R  C  S  V  A  F  P  A  C  *  S  N  C  H  F  S  P  Q  I  *  T  Y  R :   I  I  Y  D  *  D  Y  I  R  E  N  Y  S  E  D  N  W  K  F  I  T  A  P  T  I  R  S  A  S  H  T  R  S  V  Q  A  T  I  K  Y  R  K  W  *  V  *  S  Y  L  H  R  F  *  Y  T  S  N  K  G  R  Q  R  R  A  *  S  F  R  Y  L  I  S  *  A  A  M  N  I  V  F  L  Q  C  F  V  A  T  I  S  C  N  N  I  S  N  V  *  I  C  S  T  L  F  C  W  S  Q  L  S  N  L  *  C  Y  C  K  F  K  S  V  Y  S  K  F  D :   *  K  K  R  I   </second_frame>
            <third_frame>   T  T  N  Q  T  P  Q  K  I  D  P  F  F  *  N  S  S  S  T  M  A  S  L  L  H  S  R  L  P  L  S  H  N  H  S  L  S  N  S  C  Q  S  F  P  C  H  L  P  G  R  S  K  R  S  T  Q  R  L  L  E  E  R  S  Y  D  S  K  R  S  L  V  C  Q  S  G  I  D  E  V  T  F  I  E  P  P  G  S  K  E  A  E  A  E  L  I  G  S  L  K  L  K  L  L  :  S  A  V  S  G  L  N  R  G  L  A  A  S  E  D  D  L  K  K  A  D  E  A  A  K  E  L  E  S  C  A  G  A  V  D  L  A  A  D  L  D  K  L  Q  G  R  W  K  L  I  Y  S  S  A  F  S  S  R  T  L  G  G  S  R  P  G  P  P  T  G  R  L  L  P  I  T  L  G  Q  :  V  F  Q  R  I  D  V  L  S  K  D  F  D  N  I  V  E  L  E  L  G  A  P  W  P  F  P  P  V  E  A  T  A  T  L  A  H  K  F  E  L  I   : G  S  S  T  I  K  I  I  F  E  K  T  T  V  K  T  T  G  N  L  S  Q  L  P  P  L  E  V  P  R  I  P  D  Q  F  R  P  P  S  N  T  G  S  G  E  F  E  V  T  Y  I  D  S  D  T  R  V  T  R  G  D  R  G  E  L  R  V  F  V  I  S  *  V  K  L  Q  *  I  *  S  S  Y  N  V  L  L  L  Q  F  H  V  T  T  Y  Q  M  C  R  Y  A  Q  H  Y  S  A  G  H  S  Y  Q  I  C  N  A  T  A  N  S  N  L  Y  T  V  N  L   : T  E  K  K  E  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3173" stop="3439"/>
                    <exon start="6270" stop="6506"/>
                    <exon start="7064" stop="7190"/>
                    <exon start="7310" stop="7524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSTMASLLHSRLPLSHNHSLSNSCQSFPCHLPGRSKRSTQRLLEERSYDSKRSLVCQSGIDEVTFIEPPGSKEAEAELIGSLKLKLLSAVSGLNRGLAASEDDLKKADEAAKELESCAGAVDLAADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELELGAPWPFPPVEATATLAHKFELIGSSTIKIIFEKTTVKTTGNLSQLPPLEVPRIPDQFRPPSNTGSGEFEVTYIDSDTRVTRGDRGELRVFVIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12400" PGL_stop="13042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12400" e_stop="13042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12400" e_stop="13042" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12400" stop="13042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGATGAAGGAGATACAGAGAATCCCCCCGTCGATGAGGAGGTGCAGAAGGAGGTCATTGAGGAAAAAACAATATATTCTGATCTGCTTGATCAAGATATGAGTTGTTTGAGAACAGATCCTGATCATTTCATTGATTTATTGAAGGACAGTGATGTTTGTATGGGTGCAGCCCCTTCTAGGCAAGCGCTTATTCAAAACATTTTCACACTCTGTGGCAATTATAGAGAGCTTTCTCAGCATAGTGTAAGCCCAGTGCCTGCACAGAAGAATTTGGAAGATATTGATTCTTCAGTACCCACAGTTAAGACAATTGGAGAGGATTATGCATCTGCGTGTGCTGCAGAAGGTTTGTCCAATGAACTTTTGCCATTATGCAATCCCGAGACCATAAAAAAGTCACCAGTTAATCAGACAAGAATGTTCAAGAGCTCTTGTGACAAAGAAAATGATTCAAAGGAGAACTTCAACCCTACTTGTGGCAATCTTGAAGTCCACGTGAAATGGGAAGCTGCATCAAAAGAGAATCCTAGTGTAGCAACCACAGTAAAGGTTGGCAAAGATTCATCCTTAGCTGATCTGCGCAAACAGATTGAGCTACACCTCGGTGCAGACAATCCATTCACTTTCCTTACAATAGGG</gDNA_template>
            <first_frame> *  *  *  R  R  Y  R  E  S  P  R  R  *  G  G  A  E  G  G  H  *  G  K  N  N  I  F  *  S  A  *  S  R  Y  E  L  F  E  N  R  S  *  S  F  H  *  F  I  E  G  Q  *  C  L  Y  G  C  S  P  F  *  A  S  A  Y  S  K  H  F  H  T  L  W  Q  L  *  R  A  F  S  A  *  C  K  P  S  A  C  T  E  E  F  G  R  Y  *  F  F  S  T  H  S  *  D  N  W  R  G  L  C  I  C  V  C  C  R  R  F  V  Q  *  T  F  A  I  M  Q  S  R  D  H  K  K  V  T  S  *  S  D  K  N  V  Q  E  L  L  *  Q  R  K  *  F  K  G  E  L  Q  P  Y  L  W  Q  S  *  S  P  R  E  M  G  S  C  I  K  R  E  S  *  C  S  N  H  S  K  G  W  Q  R  F  I  L  S  *  S  A  Q  T  D  *  A  T  P  R  C  R  Q  S  I  H  F  P  Y  N  R  </first_frame>
            <second_frame>  D  D  E  G  D  T  E  N  P  P  V  D  E  E  V  Q  K  E  V  I  E  E  K  T  I  Y  S  D  L  L  D  Q  D  M  S  C  L  R  T  D  P  D  H  F  I  D  L  L  K  D  S  D  V  C  M  G  A  A  P  S  R  Q  A  L  I  Q  N  I  F  T  L  C  G  N  Y  R  E  L  S  Q  H  S  V  S  P  V  P  A  Q  K  N  L  E  D  I  D  S  S  V  P  T  V  K  T  I  G  E  D  Y  A  S  A  C  A  A  E  G  L  S  N  E  L  L  P  L  C  N  P  E  T  I  K  K  S  P  V  N  Q  T  R  M  F  K  S  S  C  D  K  E  N  D  S  K  E  N  F  N  P  T  C  G  N  L  E  V  H  V  K  W  E  A  A  S  K  E  N  P  S  V  A  T  T  V  K  V  G  K  D  S  S  L  A  D  L  R  K  Q  I  E  L  H  L  G  A  D  N  P  F  T  F  L  T  I  G </second_frame>
            <third_frame>   M  M  K  E  I  Q  R  I  P  P  S  M  R  R  C  R  R  R  S  L  R  K  K  Q  Y  I  L  I  C  L  I  K  I  *  V  V  *  E  Q  I  L  I  I  S  L  I  Y  *  R  T  V  M  F  V  W  V  Q  P  L  L  G  K  R  L  F  K  T  F  S  H  S  V  A  I  I  E  S  F  L  S  I  V  *  A  Q  C  L  H  R  R  I  W  K  I  L  I  L  Q  Y  P  Q  L  R  Q  L  E  R  I  M  H  L  R  V  L  Q  K  V  C  P  M  N  F  C  H  Y  A  I  P  R  P  *  K  S  H  Q  L  I  R  Q  E  C  S  R  A  L  V  T  K  K  M  I  Q  R  R  T  S  T  L  L  V  A  I  L  K  S  T  *  N  G  K  L  H  Q  K  R  I  L  V  *  Q  P  Q  *  R  L  A  K  I  H  P  *  L  I  C  A  N  R  L  S  Y  T  S  V  Q  T  I  H  S  L  S  L  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12401" stop="13042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDEGDTENPPVDEEVQKEVIEEKTIYSDLLDQDMSCLRTDPDHFIDLLKDSDVCMGAAPSRQALIQNIFTLCGNYRELSQHSVSPVPAQKNLEDIDSSVPTVKTIGEDYASACAAEGLSNELLPLCNPETIKKSPVNQTRMFKSSCDKENDSKENFNPTCGNLEVHVKWEAASKENPSVATTVKVGKDSSLADLRKQIELHLGADNPFTFLTIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26336" PGL_stop="24046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26336" e_stop="26222"/>
            <exon e_start="24933" e_stop="24046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26336" e_stop="26222" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26221" i_stop="24934" i_length="1288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24933" e_stop="24046" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26336" stop="26222"/>
              <exon start="24933" stop="24416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24784" stop="24046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260596" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTAGAAGATGGTGTTCTTCAGTGAATGGTAAGGGTGAAATTTCACAGCCGTTGAAGAAATCAGAAGTGATGGTGCAACTGAAAGACAGAGATGTGGAGATAGCTGAAAAGAA : GCATATGACTGAAAATGAAGAGGTCTTTCCTAGAGAAACACGTGTCCAGAAGGAAGTAGATTCGTGGAATAGTTTGGTAGCGACCTTTCAAATAACTAAAAAGAAGATATTTAGAAATATTTTGGAGCAGAAGAGCAGTAGCACTCATTCATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTAAGAAAGAGAGAGAACAATTGCTAGCTGAGGAAGCATCATCAAGTTTACAAATCAGTTCTGGCGAAGAGATCCTGTCAAAATCTGAGGACGCACGTATCGTAGAACATCGGATGCAAATTGAGATACCTAGGACATCACATAGAATTTCTGCAAATAAATCTGGTTCAACTGCATCTGAAAGCCAGGAGGACATTATGAAGAAGTTCAAATTTTCGTCGAATCAGATTGTTGCCCCAAAGAGCGAAAAATCTGTACCTAGAGAGTTTGAGCACCTTCATGAAACTTCTCAGAATACTTTCGGCAAGAGTGGCGACATAAAGGGCTTAATAGAATGTATTAGGGTGCTCCCTCCTCAGAATCATTCTGTTGT</gDNA_template>
            <first_frame> N  V  E  D  G  V  L  Q  *  M  V  R  V  K  F  H  S  R  *  R  N  Q  K  *  W  C  N  *  K  T  E  M  W  R  *  L  K  R   : S  I  *  L  K  M  K  R  S  F  L  E  K  H  V  S  R  R  K  *  I  R  G  I  V  W  *  R  P  F  K  *  L  K  R  R  Y  L  E  I  F  W  S  R  R  A  V  A  L  I  H  *  L  P  L  L  I  L  R  I  L  I  M  L  Y  L  L  I  V  M  I  V  E  V  *  I  I  L  R  V  Q  F  V  Q  K  R  R  L  *  L  I  W  K  K  M  L  T  V  K  H  L  C  L  L  L  *  P  L  R  L  L  I  *  K  T  L  Q  I  Q  L  R  L  R  N  R  E  I  S  R  Q  K  N  V  K  E  A  L  T  T  G  *  M  T  C  L  P  V  H  H  L  S  A  G  K  P  I  P  T  T  V  F  N  *  L  M  I  S  I  I  Q  S  S  L  R  K  R  E  N  N  C  *  L  R  K  H  H  Q  V  Y  K  S  V  L  A  K  R  S  C  Q  N  L  R  T  H  V  S  *  N  I  G  C  K  L  R  Y  L  G  H  H  I  E  F  L  Q  I  N  L  V  Q  L  H  L  K  A  R  R  T  L  *  R  S  S  N  F  R  R  I  R  L  L  P  Q  R  A  K  N  L  Y  L  E  S  L  S  T  F  M  K  L  L  R  I  L  S  A  R  V  A  T  *  R  A  *  *  N  V  L  G  C  S  L  L  R  I  I  L  L  </first_frame>
            <second_frame>  M  *  K  M  V  F  F  S  E  W  *  G  *  N  F  T  A  V  E  E  I  R  S  D  G  A  T  E  R  Q  R  C  G  D  S  *  K  E  :  A  Y  D  *  K  *  R  G  L  S  *  R  N  T  C  P  E  G  S  R  F  V  E  *  F  G  S  D  L  S  N  N  *  K  E  D  I  *  K  Y  F  G  A  E  E  Q  *  H  S  F  I  N  F  H  F  *  S  *  G  F  *  *  C  C  I  C  S  *  S  *  *  W  K  Y  E  *  S  *  E  Y  N  S  F  R  K  D  V  Y  N  *  Y  G  R  K  C  *  Q  *  N  I  S  V  F  F  Y  S  R  *  D  C  *  Y  E  K  H  F  K  Y  S  *  D  *  G  I  A  K  Y  L  V  K  R  M  *  R  K  H  *  L  R  G  K  *  H  V  F  R  C  I  I  Y  L  Q  E  S  R  F  Q  R  R  C  S  T  D  *  *  F  P  S  F  R  V  R  *  E  R  E  R  T  I  A  S  *  G  S  I  I  K  F  T  N  Q  F  W  R  R  D  P  V  K  I  *  G  R  T  Y  R  R  T  S  D  A  N  *  D  T  *  D  I  T  *  N  F  C  K  *  I  W  F  N  C  I  *  K  P  G  G  H  Y  E  E  V  Q  I  F  V  E  S  D  C  C  P  K  E  R  K  I  C  T  *  R  V  *  A  P  S  *  N  F  S  E  Y  F  R  Q  E  W  R  H  K  G  L  N  R  M  Y  *  G  A  P  S  S  E  S  F  C  C </second_frame>
            <third_frame>   C  R  R  W  C  S  S  V  N  G  K  G  E  I  S  Q  P  L  K  K  S  E  V  M  V  Q  L  K  D  R  D  V  E  I  A  E  K  K :   H  M  T  E  N  E  E  V  F  P  R  E  T  R  V  Q  K  E  V  D  S  W  N  S  L  V  A  T  F  Q  I  T  K  K  K  I  F  R  N  I  L  E  Q  K  S  S  S  T  H  S  L  T  S  T  S  D  L  K  D  S  D  N  V  V  S  A  H  S  H  D  S  G  S  M  N  N  L  K  S  T  I  R  S  E  K  T  S  I  T  N  M  E  E  N  V  D  S  K  T  S  L  S  S  F  I  A  V  E  I  V  N  M  K  N  T  S  N  T  V  E  T  E  E  S  R  N  I  S  S  K  E  C  E  G  S  T  D  Y  G  V  N  D  M  S  S  G  A  S  S  I  C  R  K  A  D  S  N  D  G  V  Q  L  I  N  D  F  H  H  S  E  F  V  K  K  E  R  E  Q  L  L  A  E  E  A  S  S  S  L  Q  I  S  S  G  E  E  I  L  S  K  S  E  D  A  R  I  V  E  H  R  M  Q  I  E  I  P  R  T  S  H  R  I  S  A  N  K  S  G  S  T  A  S  E  S  Q  E  D  I  M  K  K  F  K  F  S  S  N  Q  I  V  A  P  K  S  E  K  S  V  P  R  E  F  E  H  L  H  E  T  S  Q  N  T  F  G  K  S  G  D  I  K  G  L  I  E  C  I  R  V  L  P  P  Q  N  H  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26334" stop="26222"/>
                    <exon start="24933" stop="24048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRRWCSSVNGKGEISQPLKKSEVMVQLKDRDVEIAEKKHMTENEEVFPRETRVQKEVDSWNSLVATFQITKKKIFRNILEQKSSSTHSLTSTSDLKDSDNVVSAHSHDSGSMNNLKSTIRSEKTSITNMEENVDSKTSLSSFIAVEIVNMKNTSNTVETEESRNISSKECEGSTDYGVNDMSSGASSICRKADSNDGVQLINDFHHSEFVKKEREQLLAEEASSSLQISSGEEILSKSEDARIVEHRMQIEIPRTSHRISANKSGSTASESQEDIMKKFKFSSNQIVAPKSEKSVPREFEHLHETSQNTFGKSGDIKGLIECIRVLPPQNHSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="36106" PGL_stop="33280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36106" e_stop="35614"/>
            <exon e_start="34793" e_stop="34406"/>
            <exon e_start="33678" e_stop="33613"/>
            <exon e_start="33526" e_stop="33280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.503" acc_prob="0.994" e_score="0.955"/>
          <exon-intron don_prob="0.992" acc_prob="0.969" e_score="0.974"/>
          <exon-intron don_prob="0.941" acc_prob="0.906" e_score="0.985"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="36106" e_stop="35614" e_length="493"/>
          </exon>
          <intron i_serial="1" don_prob="0.503" acc_prob="0.994">
            <gDNA_intron_boundary i_start="35613" i_stop="34794" i_length="820"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="34793" e_stop="34406" e_length="388"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.969">
            <gDNA_intron_boundary i_start="34405" i_stop="33679" i_length="727"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="33678" e_stop="33613" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.941" acc_prob="0.906">
            <gDNA_intron_boundary i_start="33612" i_stop="33527" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.931">
            <gDNA_exon_boundary e_start="33526" e_stop="33280" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36106" stop="35614"/>
              <exon start="34793" stop="34705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35639" stop="35614"/>
              <exon start="34793" stop="34406"/>
              <exon start="33678" stop="33613"/>
              <exon start="33526" stop="33280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462316" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACTTGTATCAAAGCCCAAGGCTCGGAGTGCCGAACCAGTGTCTAAGACAAAGCGCTCTGATGTGCCAGAGAGCAAGAAAATATCTGCCATCATAGACCTTGACAAAAAGAAGGCTGCAACTCTTCCTGAGCTGAAAATCCGAACCACCAAAGAGTCGTCAGATTTACGACAAGACAAACTAACTGCGGAGAATATAGCTACGGAGAAGAATGACAGGCCTTCTGTAGCATCTGAAGGCATTGAATCATACAAGAATGATCTAGATGAAAACATTATTGAGAAAACTGTTGTTATGCTTGAGAAGGAGAAGAAACCCTCTTTGGCTGTTCCCAGTTCATCATCAGAGAACTTGGCTGTGGAAGAATGTGACAAGATTAACAGTGTTGAGAGAACTGACTATGCCTCTACACGTGACCCACCGTCACCCTTTGAAGGATTTATTAGAGCACCTGTTCCTAGCCGACTGCAAGAGCTGTCAAATTCCCATGAG : ACAGGGACGAATTGTGCAGATGACACACCCAAGTTTGCAAATATCGGAAGTACTGTTTATCGTGCTCCGTATGCTCGTGTCTCATCTGTCGAGGACCCTTGTACCAGAAACTTGGAGTTTGCTAAAGCACTTCCATCAAGCTCAGACACAGGATCAACAGTAAAAGAAATTGCCAAAGCTCATGCACCTGATATTCACACTGTTAGAGTAGATAACAATCCAGAAGCTGCAGAAAGGACTCAAGTGAAGGAATCACCAAAAGGTTTTAAACGCCTCCTGAGGTTTGGAAAGAAGAACCACATCTCTGGAGGAGCAGAATCAAATGGCGCAAACATGAATAGCATGAAGCAGGATGATAGTGTCACAAATGCTCCCTTGCCTAGTGAAG : TTTTCACTTTGAAGAATTTGATCTCCCAAGATGAAACCCCAACTGCTAGCAATGTTTCACAGAAGT : CTCGTCTCTCTTTGTTATCTCCCTTTCGAAGCAAGACTAGCGAGAAAAGGTGACAGCATTCAGTATCAAGATTATTCAAGTGCTCTGGTTGTCAGATGGAGGTGTGATTAGTCACAGCTGTTTATGACTTCCCAAAACAGTTTCTTTCGTAAATTTAGTTACTGTAAAGATGTGTTGTGTTAAGATGAGAAATGTATATACTTTCGACTGTATGTCAACTTTCAATGTACTCTACAGTTTGGATTTA</gDNA_template>
            <first_frame> *  T  C  I  K  A  Q  G  S  E  C  R  T  S  V  *  D  K  A  L  *  C  A  R  E  Q  E  N  I  C  H  H  R  P  *  Q  K  E  G  C  N  S  S  *  A  E  N  P  N  H  Q  R  V  V  R  F  T  T  R  Q  T  N  C  G  E  Y  S  Y  G  E  E  *  Q  A  F  C  S  I  *  R  H  *  I  I  Q  E  *  S  R  *  K  H  Y  *  E  N  C  C  Y  A  *  E  G  E  E  T  L  F  G  C  S  Q  F  I  I  R  E  L  G  C  G  R  M  *  Q  D  *  Q  C  *  E  N  *  L  C  L  Y  T  *  P  T  V  T  L  *  R  I  Y  *  S  T  C  S  *  P  T  A  R  A  V  K  F  P  *   : D  R  D  E  L  C  R  *  H  T  Q  V  C  K  Y  R  K  Y  C  L  S  C  S  V  C  S  C  L  I  C  R  G  P  L  Y  Q  K  L  G  V  C  *  S  T  S  I  K  L  R  H  R  I  N  S  K  R  N  C  Q  S  S  C  T  *  Y  S  H  C  *  S  R  *  Q  S  R  S  C  R  K  D  S  S  E  G  I  T  K  R  F  *  T  P  P  E  V  W  K  E  E  P  H  L  W  R  S  R  I  K  W  R  K  H  E  *  H  E  A  G  *  *  C  H  K  C  S  L  A  *  *  S :   F  H  F  E  E  F  D  L  P  R  *  N  P  N  C  *  Q  C  F  T  E  V :   S  S  L  F  V  I  S  L  S  K  Q  D  *  R  E  K  V  T  A  F  S  I  K  I  I  Q  V  L  W  L  S  D  G  G  V  I  S  H  S  C  L  *  L  P  K  T  V  S  F  V  N  L  V  T  V  K  M  C  C  V  K  M  R  N  V  Y  T  F  D  C  M  S  T  F  N  V  L  Y  S  L  D  L </first_frame>
            <second_frame>  E  L  V  S  K  P  K  A  R  S  A  E  P  V  S  K  T  K  R  S  D  V  P  E  S  K  K  I  S  A  I  I  D  L  D  K  K  K  A  A  T  L  P  E  L  K  I  R  T  T  K  E  S  S  D  L  R  Q  D  K  L  T  A  E  N  I  A  T  E  K  N  D  R  P  S  V  A  S  E  G  I  E  S  Y  K  N  D  L  D  E  N  I  I  E  K  T  V  V  M  L  E  K  E  K  K  P  S  L  A  V  P  S  S  S  S  E  N  L  A  V  E  E  C  D  K  I  N  S  V  E  R  T  D  Y  A  S  T  R  D  P  P  S  P  F  E  G  F  I  R  A  P  V  P  S  R  L  Q  E  L  S  N  S  H  E  :  T  G  T  N  C  A  D  D  T  P  K  F  A  N  I  G  S  T  V  Y  R  A  P  Y  A  R  V  S  S  V  E  D  P  C  T  R  N  L  E  F  A  K  A  L  P  S  S  S  D  T  G  S  T  V  K  E  I  A  K  A  H  A  P  D  I  H  T  V  R  V  D  N  N  P  E  A  A  E  R  T  Q  V  K  E  S  P  K  G  F  K  R  L  L  R  F  G  K  K  N  H  I  S  G  G  A  E  S  N  G  A  N  M  N  S  M  K  Q  D  D  S  V  T  N  A  P  L  P  S  E   : V  F  T  L  K  N  L  I  S  Q  D  E  T  P  T  A  S  N  V  S  Q  K   : S  R  L  S  L  L  S  P  F  R  S  K  T  S  E  K  R  *  Q  H  S  V  S  R  L  F  K  C  S  G  C  Q  M  E  V  *  L  V  T  A  V  Y  D  F  P  K  Q  F  L  S  *  I  *  L  L  *  R  C  V  V  L  R  *  E  M  Y  I  L  S  T  V  C  Q  L  S  M  Y  S  T  V  W  I   </second_frame>
            <third_frame>   N  L  Y  Q  S  P  R  L  G  V  P  N  Q  C  L  R  Q  S  A  L  M  C  Q  R  A  R  K  Y  L  P  S  *  T  L  T  K  R  R  L  Q  L  F  L  S  *  K  S  E  P  P  K  S  R  Q  I  Y  D  K  T  N  *  L  R  R  I  *  L  R  R  R  M  T  G  L  L  *  H  L  K  A  L  N  H  T  R  M  I  *  M  K  T  L  L  R  K  L  L  L  C  L  R  R  R  R  N  P  L  W  L  F  P  V  H  H  Q  R  T  W  L  W  K  N  V  T  R  L  T  V  L  R  E  L  T  M  P  L  H  V  T  H  R  H  P  L  K  D  L  L  E  H  L  F  L  A  D  C  K  S  C  Q  I  P  M  R :   Q  G  R  I  V  Q  M  T  H  P  S  L  Q  I  S  E  V  L  F  I  V  L  R  M  L  V  S  H  L  S  R  T  L  V  P  E  T  W  S  L  L  K  H  F  H  Q  A  Q  T  Q  D  Q  Q  *  K  K  L  P  K  L  M  H  L  I  F  T  L  L  E  *  I  T  I  Q  K  L  Q  K  G  L  K  *  R  N  H  Q  K  V  L  N  A  S  *  G  L  E  R  R  T  T  S  L  E  E  Q  N  Q  M  A  Q  T  *  I  A  *  S  R  M  I  V  S  Q  M  L  P  C  L  V  K  :  F  S  L  *  R  I  *  S  P  K  M  K  P  Q  L  L  A  M  F  H  R  S  :  L  V  S  L  C  Y  L  P  F  E  A  R  L  A  R  K  G  D  S  I  Q  Y  Q  D  Y  S  S  A  L  V  V  R  W  R  C  D  *  S  Q  L  F  M  T  S  Q  N  S  F  F  R  K  F  S  Y  C  K  D  V  L  C  *  D  E  K  C  I  Y  F  R  L  Y  V  N  F  Q  C  T  L  Q  F  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36105" stop="35614"/>
                    <exon start="34793" stop="34406"/>
                    <exon start="33678" stop="33613"/>
                    <exon start="33526" stop="33474"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELVSKPKARSAEPVSKTKRSDVPESKKISAIIDLDKKKAATLPELKIRTTKESSDLRQDKLTAENIATEKNDRPSVASEGIESYKNDLDENIIEKTVVMLEKEKKPSLAVPSSSSENLAVEECDKINSVERTDYASTRDPPSPFEGFIRAPVPSRLQELSNSHETGTNCADDTPKFANIGSTVYRAPYARVSSVEDPCTRNLEFAKALPSSSDTGSTVKEIAKAHAPDIHTVRVDNNPEAAERTQVKESPKGFKRLLRFGKKNHISGGAESNGANMNSMKQDDSVTNAPLPSEVFTLKNLISQDETPTASNVSQKSRLSLLSPFRSKTSEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37227" PGL_stop="36547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37227" e_stop="36704"/>
            <exon e_start="36552" e_stop="36547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.983"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="37227" e_stop="36704" e_length="524"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36703" i_stop="36553" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="36552" e_stop="36547" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37227" stop="36704"/>
              <exon start="36552" stop="36547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37154" stop="36704"/>
              <exon start="36552" stop="36547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37097" stop="36704"/>
              <exon start="36552" stop="36547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATATGACTGATGAGTCTTTTGTAGTACCTTTTAGGTCAATGTCATTGACTGACGTTGGACCAGATGGTAGAACTGCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAG : GAAGAG</gDNA_template>
            <first_frame> S  I  L  I  S  *  T  K  L  P  H  I  I  *  L  M  S  L  L  *  Y  L  L  G  Q  C  H  *  L  T  L  D  Q  M  V  E  L  P  L  T  W  T  L  S  F  H  W  R  I  K  N  Q  K  T  A  L  L  G  L  *  V  T  S  L  M  I  L  A  *  C  L  S  V  E  Q  K  K  G  W  V  S  M  T  L  L  *  T  M  K  C  K  F  A  M  K  V  L  L  Q  R  I  K  E  R  M  E  S  P  M  M  L  R  K  V  Q  K  N  Q  R  K  I  A  G  Q  K  L  L  L  I  L  R  T  R  K  G  V  E  D  Q  *  E  K  E  K  C  Q  S  Q  V  L  W  M  M  H  E  H  V  L  R  G  *  D  P  S  K  L  I  C  R  R  *  K  K  K  R :   K   </first_frame>
            <second_frame>  A  Y  *  *  A  R  Q  S  F  L  T  *  Y  D  *  *  V  F  C  S  T  F  *  V  N  V  I  D  *  R  W  T  R  W  *  N  C  H  *  H  G  L  *  A  S  I  G  A  S  K  I  R  K  Q  L  C  W  D  Y  E  L  R  A  *  *  F  *  L  D  V  *  A  W  N  R  K  K  V  G  S  L  *  P  C  F  R  L  *  N  A  S  L  Q  *  R  F  C  F  K  G  *  K  K  E  W  S  L  Q  *  C  *  G  R  F  K  K  I  R  E  R  S  Q  V  K  S  Y  C  *  Y  F  G  Q  E  K  E  W  R  T  N  K  K  R  K  N  V  K  V  K  S  F  G  *  C  T  S  T  C  *  E  D  K  I  L  Q  S  *  Y  A  E  D  E  K  R  K   : G  R  </second_frame>
            <third_frame>   H  T  N  K  L  D  K  A  S  S  H  N  M  T  D  E  S  F  V  V  P  F  R  S  M  S  L  T  D  V  G  P  D  G  R  T  A  I  N  M  D  S  E  L  P  L  A  H  Q  K  S  E  N  S  S  A  G  I  M  S  Y  E  P  N  D  F  S  L  M  S  E  R  G  T  E  K  R  L  G  L  Y  D  P  A  L  D  Y  E  M  Q  V  C  N  E  G  S  A  S  K  D  K  R  K  N  G  V  S  N  D  V  K  E  G  S  K  K  S  E  K  D  R  R  S  K  A  T  V  D  T  S  D  K  K  R  S  G  G  P  I  R  K  G  K  M  S  K  S  S  P  L  D  D  A  R  A  R  A  E  R  I  R  S  F  K  A  D  M  Q  K  M  K  K  E  K  :  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37225" stop="36704"/>
                    <exon start="36552" stop="36547"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTNKLDKASSHNMTDESFVVPFRSMSLTDVGPDGRTAINMDSELPLAHQKSENSSAGIMSYEPNDFSLMSERGTEKRLGLYDPALDYEMQVCNEGSASKDKRKNGVSNDVKEGSKKSEKDRRSKATVDTSDKKRSGGPIRKGKMSKSSPLDDARARAERIRSFKADMQKMKKEKEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="40632" PGL_stop="39099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40632" e_stop="40546"/>
            <exon e_start="40463" e_stop="40424"/>
            <exon e_start="40049" e_stop="39997"/>
            <exon e_start="39919" e_stop="39873"/>
            <exon e_start="39207" e_stop="39099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.931"/>
          <exon-intron don_prob="0.980" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="40632" e_stop="40546" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40545" i_stop="40464" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40463" e_stop="40424" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.835">
            <gDNA_intron_boundary i_start="40423" i_stop="40050" i_length="374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40049" e_stop="39997" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39996" i_stop="39920" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39919" e_stop="39873" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.842" acc_prob="0.897">
            <gDNA_intron_boundary i_start="39872" i_stop="39208" i_length="665"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39207" e_stop="39099" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40632" stop="40546"/>
              <exon start="40463" stop="40424"/>
              <exon start="40049" stop="39997"/>
              <exon start="39919" stop="39873"/>
              <exon start="39207" stop="39099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGGTATACACCATTGAATCTGAGATCTTGCAGATTGAGGAAGCAATAGCCCTTCAAGGAAACAATGATAGTGGGCAGGGGCCA : GCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAG : GTACTAAATCTACAGCAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAG : CCGGGGGAAGATCAACCTCAAACAGATTTGCAGGAAGAAAATTCAAG : AGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGATCGTATGACA</gDNA_template>
            <first_frame> E  R  V  Y  T  I  E  S  E  I  L  Q  I  E  E  A  I  A  L  Q  G  N  N  D  S  G  Q  G  P  :  A  E  Y  K  E  A  K  P  A  G  N  I  A   : G  T  K  S  T  A  D  V  N  E  E  K  A  I  V  L  Y  K  :  P  G  E  D  Q  P  Q  T  D  L  Q  E  E  N  S  R :   V  Q  F  L  K  V  L  E  T  R  K  S  V  L  Q  K  E  Q  G  M  A  F  A  R  A  V  A  A  G  F  D  I  D  R  M  T </first_frame>
            <second_frame>  K  G  Y  T  P  L  N  L  R  S  C  R  L  R  K  Q  *  P  F  K  E  T  M  I  V  G  R  G  Q :   L  N  T  K  K  L  N  Q  Q  E  T  L  Q  :  V  L  N  L  Q  Q  M  S  M  R  R  K  L  L  F  F  T  S :   R  G  K  I  N  L  K  Q  I  C  R  K  K  I  Q   : E  Y  S  F  *  R  S  W  R  L  A  S  L  C  F  K  K  N  K  E  W  H  L  L  V  L  *  L  L  V  L  I  L  I  V  *   </second_frame>
            <third_frame>   K  G  I  H  H  *  I  *  D  L  A  D  *  G  S  N  S  P  S  R  K  Q  *  *  W  A  G  A   : S  *  I  Q  R  S  *  T  S  R  K  H  C  R :   Y  *  I  Y  S  R  C  Q  *  G  E  S  Y  C  S  L  Q   : A  G  G  R  S  T  S  N  R  F  A  G  R  K  F  K  :  S  T  V  S  E  G  P  G  D  S  Q  V  C  A  S  K  R  T  R  N  G  I  C  S  C  C  S  C  W  F  *  Y  *  S  Y  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40632" stop="40546"/>
                    <exon start="40463" stop="40424"/>
                    <exon start="40049" stop="39997"/>
                    <exon start="39919" stop="39873"/>
                    <exon start="39207" stop="39099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERVYTIESEILQIEEAIALQGNNDSGQGPAEYKEAKPAGNIAGTKSTADVNEEKAIVLYKPGEDQPQTDLQEENSRVQFLKVLETRKSVLQKEQGMAFARAVAAGFDIDRMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="56839" PGL_stop="52585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56839" e_stop="56787"/>
            <exon e_start="55954" e_stop="55884"/>
            <exon e_start="55244" e_stop="55183"/>
            <exon e_start="55104" e_stop="55041"/>
            <exon e_start="54939" e_stop="54855"/>
            <exon e_start="54709" e_stop="54583"/>
            <exon e_start="54463" e_stop="54390"/>
            <exon e_start="54296" e_stop="54233"/>
            <exon e_start="53714" e_stop="53578"/>
            <exon e_start="53418" e_stop="53109"/>
            <exon e_start="52999" e_stop="52585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.958"/>
          <exon-intron don_prob="0.995" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.964" e_score="0.984"/>
          <exon-intron don_prob="0.382" acc_prob="0.995" e_score="0.984"/>
          <exon-intron don_prob="0.988" acc_prob="0.793" e_score="0.988"/>
          <exon-intron don_prob="0.998" acc_prob="0.975" e_score="0.976"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.692" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.992" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="56839" e_stop="56787" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56786" i_stop="55955" i_length="832"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55954" e_stop="55884" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.699">
            <gDNA_intron_boundary i_start="55883" i_stop="55245" i_length="639"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="55244" e_stop="55183" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.964">
            <gDNA_intron_boundary i_start="55182" i_stop="55105" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="55104" e_stop="55041" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.382" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55040" i_stop="54940" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="54939" e_stop="54855" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.793">
            <gDNA_intron_boundary i_start="54854" i_stop="54710" i_length="145"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="54709" e_stop="54583" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.975">
            <gDNA_intron_boundary i_start="54582" i_stop="54464" i_length="119"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="54463" e_stop="54390" e_length="74"/>
          </exon>
          <intron i_serial="7" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54389" i_stop="54297" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="54296" e_stop="54233" e_length="64"/>
          </exon>
          <intron i_serial="8" don_prob="0.692" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54232" i_stop="53715" i_length="518"/>
          </intron>
          <exon e_serial="9" e_score="0.971">
            <gDNA_exon_boundary e_start="53714" e_stop="53578" e_length="137"/>
          </exon>
          <intron i_serial="9" don_prob="0.884" acc_prob="0.992">
            <gDNA_intron_boundary i_start="53577" i_stop="53419" i_length="159"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53418" e_stop="53109" e_length="310"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109"/>
          </intron>
          <exon e_serial="11" e_score="0.993">
            <gDNA_exon_boundary e_start="52999" e_stop="52585" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56839" stop="56787"/>
              <exon start="55954" stop="55884"/>
              <exon start="55244" stop="55183"/>
              <exon start="55104" stop="55041"/>
              <exon start="54939" stop="54855"/>
              <exon start="54709" stop="54583"/>
              <exon start="54463" stop="54390"/>
              <exon start="54296" stop="54233"/>
              <exon start="53714" stop="53638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56834" stop="56787"/>
              <exon start="55954" stop="55884"/>
              <exon start="55244" stop="55183"/>
              <exon start="55104" stop="55041"/>
              <exon start="54939" stop="54855"/>
              <exon start="54709" stop="54583"/>
              <exon start="54463" stop="54390"/>
              <exon start="54296" stop="54233"/>
              <exon start="53714" stop="53595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55186" stop="55183"/>
              <exon start="55104" stop="55041"/>
              <exon start="54939" stop="54855"/>
              <exon start="54709" stop="54583"/>
              <exon start="54463" stop="54390"/>
              <exon start="54296" stop="54233"/>
              <exon start="53714" stop="53578"/>
              <exon start="53418" stop="53216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55186" stop="55183"/>
              <exon start="55104" stop="55041"/>
              <exon start="54939" stop="54855"/>
              <exon start="54709" stop="54583"/>
              <exon start="54463" stop="54390"/>
              <exon start="54296" stop="54233"/>
              <exon start="53714" stop="53578"/>
              <exon start="53418" stop="53373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54891" stop="54855"/>
              <exon start="54709" stop="54583"/>
              <exon start="54463" stop="54390"/>
              <exon start="54296" stop="54233"/>
              <exon start="53714" stop="53578"/>
              <exon start="53418" stop="53155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53369" stop="53109"/>
              <exon start="52999" stop="52585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53234" stop="53109"/>
              <exon start="52999" stop="52834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53201" stop="53109"/>
              <exon start="52999" stop="52605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366631" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGATATTAAGCCCGACAACTTTTTAATGGGTTTAGGGCGTAAAGCAAATCAG : GTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAG : GGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGCGTTAACACCCATCTTGGAGTTG : AACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGAGAGGAAG : TCTGCCATGGCAAGGTCTGAAAGCTGGCACCAAAAAGCAGAAATATGACAGGATTAGTGAGAAGAAGATGCTTACACCTATAGAG : GTGCTTTGCAAATCCTATCCTTCAGAATTCATATCATATTTTCATTATTGCCGATCATTACGGTTTGATGACAAGCCAGATTACTCATACCTAAAGAGGCTATTCCGTGACCTTTTCATTAGAGAGG : GTTATCAATTTGACTATGTGTTTGATTGGACTATCTTGAAGTATCCCCAGATCGGCTCCAGTTCAAGAGCACGA : CAACCTATTGCAAGATTACCTGTGAATCCGGGACCATCCATTGAAAGACCAGAAAAGATCCCTG : TGAGGCAGGAAATCAAAGATAGGTTTTCTGGTGCTGTGGAGGCGTTTTCTAGAAGGAACGTGTCTGGAACTGGTTTGCAAGGGGACCATTTGAGACATCACAGATCATCTGACGATGTACCATCATCTAAGGATGTG : CAAGCTGATGCTGAAAGAGGCCGTGTATCTCGGACTGGTAGCACCTCGAGGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG : TTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTGCTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTATATTAACTTGTTACTATGAAC</gDNA_template>
            <first_frame> V  I  L  S  P  T  T  F  *  W  V  *  G  V  K  Q  I  R :   Y  T  S  L  T  M  V  L  P  R  N  T  E  I  F  R  H  T  S  I  Y  H  T   : G  K  T  K  T  S  Q  E  Q  L  V  M  L  A  L  T  P  I  L  E  L  :  N  K  A  E  E  T  I  W  S  L  L  V  M  C  L  C  I  F  *  E  E   : V  C  H  G  K  V  *  K  L  A  P  K  S  R  N  M  T  G  L  V  R  R  R  C  L  H  L  *  R :   C  F  A  N  P  I  L  Q  N  S  Y  H  I  F  I  I  A  D  H  Y  G  L  M  T  S  Q  I  T  H  T  *  R  G  Y  S  V  T  F  S  L  E  R  :  V  I  N  L  T  M  C  L  I  G  L  S  *  S  I  P  R  S  A  P  V  Q  E  H  D :   N  L  L  Q  D  Y  L  *  I  R  D  H  P  L  K  D  Q  K  R  S  L  :  *  G  R  K  S  K  I  G  F  L  V  L  W  R  R  F  L  E  G  T  C  L  E  L  V  C  K  G  T  I  *  D  I  T  D  H  L  T  M  Y  H  H  L  R  M  C :   K  L  M  L  K  E  A  V  Y  L  G  L  V  A  P  R  G  G  L  *  W  E  A  A  G  P  A  H  L  A  N  P  L  T  I  A  L  V  A  *  V  Q  A  A  A  A  F  P  L  P  K  E  Y  N  L  D  L  N  P  S  L  H  L  L  P  A  L  L  Q  L  E  G  V  G  M  M  L  L  G  A  L  S  Y  *  L  L  A  P  E  E  G  N  E  A  I  *  C  L  I  S  T  P  K  :  L  N  S  K  L  S  S  Y  L  Q  G  L  I  N  K  H  A  L  I  L  A  I  *  Q  T  C  *  T  F  K  R  *  R  G  V  S  V  L  Y  I  *  E  Y  L  S  N  V  M  L  *  T  G  I  S  L  E  K  *  K  I  F  H  I  W  P  L  L  P  *  C  A  W  L  L  C  L  R  T  G  R  M  L  M  A  K  V  N  S  S  W  L  C  S  V  A  P  I  T  *  G  A  T  S  V  L  P  L  S  C  V  V  L  V  P  R  I  V  I  I  Y  F  Y  V  M  Y  P  L  I  F  L  P  I  L  T  C  Y  Y  E  </first_frame>
            <second_frame>  *  Y  *  A  R  Q  L  F  N  G  F  R  A  *  S  K  S   : G  I  H  H  *  L  W  S  C  Q  E  I  Q  R  S  S  D  T  Q  A  Y  T  I  Q  :  G  K  Q  K  P  H  R  N  S  S  L  C  *  R  *  H  P  S  W  S  * :   T  K  Q  K  R  R  S  G  V  S  W  L  C  A  Y  V  F  F  E  R  K  :  S  A  M  A  R  S  E  S  W  H  Q  K  A  E  I  *  Q  D  *  *  E  E  D  A  Y  T  Y  R   : G  A  L  Q  I  L  S  F  R  I  H  I  I  F  S  L  L  P  I  I  T  V  *  *  Q  A  R  L  L  I  P  K  E  A  I  P  *  P  F  H  *  R  G :   L  S  I  *  L  C  V  *  L  D  Y  L  E  V  S  P  D  R  L  Q  F  K  S  T   : T  T  Y  C  K  I  T  C  E  S  G  T  I  H  *  K  T  R  K  D  P  C :   E  A  G  N  Q  R  *  V  F  W  C  C  G  G  V  F  *  K  E  R  V  W  N  W  F  A  R  G  P  F  E  T  S  Q  I  I  *  R  C  T  I  I  *  G  C   : A  S  *  C  *  K  R  P  C  I  S  D  W  *  H  L  E  E  G  C  N  G  K  Q  P  A  Q  L  I  W  R  T  H  *  Q  S  L  W  S  L  R  F  K  Q  R  P  H  F  H  Y  P  K  S  T  T  W  I  *  I  Q  V  F  I  F  Y  P  R  Y  C  N  *  R  G  *  G  *  C  S  *  E  L  *  V  T  N  Y  W  H  R  K  K  E  M  R  L  Y  N  V  *  Y  L  P  P  S :   *  T  A  S  *  A  A  I  F  K  D  L  S  T  S  M  H  *  F  L  Q  F  N  K  L  A  K  L  S  R  D  R  G  V  F  L  F  C  I  F  E  N  T  S  L  M  *  C  C  R  P  G  S  L  S  K  N  K  K  Y  F  T  S  G  H  C  S  P  D  V  H  G  C  Y  A  C  E  R  G  G  C  *  W  R  K  *  I  A  H  G  Y  A  V  *  L  R  L  L  K  G  L  P  Q  Y  F  L  L  V  V  W  F  L  C  P  E  L  L  S  Y  T  F  M  L  C  T  L  *  F  F  F  L  Y  *  L  V  T  M  N </second_frame>
            <third_frame>   D  I  K  P  D  N  F  L  M  G  L  G  R  K  A  N  Q  :  V  Y  I  I  D  Y  G  L  A  K  K  Y  R  D  L  Q  T  H  K  H  I  P  Y  R :   E  N  K  N  L  T  G  T  A  R  Y  A  S  V  N  T  H  L  G  V   : E  Q  S  R  R  D  D  L  E  S  L  G  Y  V  L  M  Y  F  L  R  G  S :   L  P  W  Q  G  L  K  A  G  T  K  K  Q  K  Y  D  R  I  S  E  K  K  M  L  T  P  I  E  :  V  L  C  K  S  Y  P  S  E  F  I  S  Y  F  H  Y  C  R  S  L  R  F  D  D  K  P  D  Y  S  Y  L  K  R  L  F  R  D  L  F  I  R  E   : G  Y  Q  F  D  Y  V  F  D  W  T  I  L  K  Y  P  Q  I  G  S  S  S  R  A  R  :  Q  P  I  A  R  L  P  V  N  P  G  P  S  I  E  R  P  E  K  I  P   : V  R  Q  E  I  K  D  R  F  S  G  A  V  E  A  F  S  R  R  N  V  S  G  T  G  L  Q  G  D  H  L  R  H  H  R  S  S  D  D  V  P  S  S  K  D  V  :  Q  A  D  A  E  R  G  R  V  S  R  T  G  S  T  S  R  R  A  V  M  G  S  S  R  P  S  S  S  G  E  P  T  D  N  R  S  G  R  L  G  S  S  S  G  R  I  S  T  T  Q  R  V  Q  P  G  F  E  S  K  S  S  S  F  T  R  A  T  A  T  R  G  G  R  D  D  A  L  R  S  F  E  L  L  T  I  G  T  G  R  R  K  *  G  Y  I  M  S  N  I  Y  P  Q   : V  E  Q  Q  V  E  Q  L  S  S  R  T  Y  Q  Q  A  C  T  D  S  C  N  L  T  N  L  L  N  F  Q  E  I  E  G  C  F  C  F  V  Y  L  R  I  P  L  *  C  D  V  V  D  R  D  L  S  R  K  I  K  N  I  S  H  L  A  I  A  P  L  M  C  M  A  A  M  L  A  N  G  E  D  V  N  G  E  S  K  *  L  M  V  M  Q  C  S  S  D  Y  L  R  G  Y  L  S  T  S  S  *  L  C  G  S  C  A  Q  N  C  Y  H  I  L  L  C  Y  V  P  S  N  F  S  S  Y  I  N  L  L  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56837" stop="56787"/>
                    <exon start="55954" stop="55884"/>
                    <exon start="55244" stop="55183"/>
                    <exon start="55104" stop="55041"/>
                    <exon start="54939" stop="54855"/>
                    <exon start="54709" stop="54583"/>
                    <exon start="54463" stop="54390"/>
                    <exon start="54296" stop="54233"/>
                    <exon start="53714" stop="53578"/>
                    <exon start="53418" stop="53140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMLTPIEVLCKSYPSEFISYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARQPIARLPVNPGPSIERPEKIPVRQEIKDRFSGAVEAFSRRNVSGTGLQGDHLRHHRSSDDVPSSKDVQADAERGRVSRTGSTSRRAVMGSSRPSSSGEPTDNRSGRLGSSSGRISTTQRVQPGFESKSSSFTRATATRGGRDDALRSFELLTIGTGRRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65607" PGL_stop="62301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65607" e_stop="65537"/>
            <exon e_start="65434" e_stop="65394"/>
            <exon e_start="64789" e_stop="64720"/>
            <exon e_start="64620" e_stop="64472"/>
            <exon e_start="64395" e_stop="64300"/>
            <exon e_start="63206" e_stop="63136"/>
            <exon e_start="62495" e_stop="62434"/>
            <exon e_start="62357" e_stop="62301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.581" acc_prob="0.999" e_score="0.831"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.976"/>
          <exon-intron don_prob="0.967" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="0.581" acc_prob="0.965" e_score="0.946"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="0.958"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.887"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="0.887"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.831">
            <gDNA_exon_boundary e_start="65607" e_stop="65537" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.581" acc_prob="0.999">
            <gDNA_intron_boundary i_start="65536" i_stop="65435" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="65434" e_stop="65394" e_length="41"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="65393" i_stop="64790" i_length="604"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="64789" e_stop="64720" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64719" i_stop="64621" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="0.946">
            <gDNA_exon_boundary e_start="64620" e_stop="64472" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.581" acc_prob="0.965">
            <gDNA_intron_boundary i_start="64471" i_stop="64396" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="0.958">
            <gDNA_exon_boundary e_start="64395" e_stop="64300" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64299" i_stop="63207" i_length="1093"/>
          </intron>
          <exon e_serial="6" e_score="0.887">
            <gDNA_exon_boundary e_start="63206" e_stop="63136" e_length="71"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63135" i_stop="62496" i_length="640"/>
          </intron>
          <exon e_serial="7" e_score="0.887">
            <gDNA_exon_boundary e_start="62495" e_stop="62434" e_length="62"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62433" i_stop="62358" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="62357" e_stop="62301" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65607" stop="65537"/>
              <exon start="65434" stop="65394"/>
              <exon start="64789" stop="64720"/>
              <exon start="64620" stop="64616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65423" stop="65394"/>
              <exon start="64789" stop="64720"/>
              <exon start="64620" stop="64472"/>
              <exon start="64395" stop="64300"/>
              <exon start="63206" stop="63136"/>
              <exon start="62495" stop="62434"/>
              <exon start="62357" stop="62301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATCATGTGGTTGGTGGCACGTATAAACTGGGTCTGAAGATTGGTAAAGGATATTTAGCGGATTATCTGG : GGGTAAATGTGCAAACTGAAGAAGAAGTTGCTGTGAAGCTG : GAATCAACTAAAACAGAACACCCTCACCTTCATTATGAATCAAAGTTGTATAGGCTTCTACAAGGAGGAA : CTGGGATTCCAAACGTCAGGTGGTTTGGCGTTGAAGGTGAATACAATGCCATGGTTATTGACCTTCTTGGGCCAAGTTTGGAAGACTTGTTTAACTATTGCAATAGGAGGTTCACTTTAAAGACAGTTTTAATGCTGGCAGATCAATTG : ATTAATAGGGTTGAATAAATGCACTCAAGAGGATTTCTTCACCGTGACATTAAGCCCGAAAACTTCTTAATGGGTATAGGGCGTAAAGCAAATCAG : GTATACATGATTGACTATGCTCTTGCCAACAAATACAGAGATCATGAGACACATGAGCATATACCATTCAG : GGAAAACAAAAGGCCCACAGGAACAGCTCGTTATTCTAGTGTTAGCACCCATCTTGGATTTG : AACAAAGCAGAAGAGACGATCTGGAGTGTCTTGGTTATGTGCTTATGTATTTTTTGA</gDNA_template>
            <first_frame> G  S  C  G  W  W  H  V  *  T  G  S  E  D  W  *  R  I  F  S  G  L  S  G :   G  K  C  A  N  *  R  R  S  C  C  E  A   : G  I  N  *  N  R  T  P  S  P  S  L  *  I  K  V  V  *  A  S  T  R  R  N :   W  D  S  K  R  Q  V  V  W  R  *  R  *  I  Q  C  H  G  Y  *  P  S  W  A  K  F  G  R  L  V  *  L  L  Q  *  E  V  H  F  K  D  S  F  N  A  G  R  S  I   : D  *  *  G  *  I  N  A  L  K  R  I  S  S  P  *  H  *  A  R  K  L  L  N  G  Y  R  A  *  S  K  S   : G  I  H  D  *  L  C  S  C  Q  Q  I  Q  R  S  *  D  T  *  A  Y  T  I  Q  :  G  K  Q  K  A  H  R  N  S  S  L  F  *  C  *  H  P  S  W  I  * :   T  K  Q  K  R  R  S  G  V  S  W  L  C  A  Y  V  F  F   </first_frame>
            <second_frame>  D  H  V  V  G  G  T  Y  K  L  G  L  K  I  G  K  G  Y  L  A  D  Y  L   : G  V  N  V  Q  T  E  E  E  V  A  V  K  L  :  E  S  T  K  T  E  H  P  H  L  H  Y  E  S  K  L  Y  R  L  L  Q  G  G   : T  G  I  P  N  V  R  W  F  G  V  E  G  E  Y  N  A  M  V  I  D  L  L  G  P  S  L  E  D  L  F  N  Y  C  N  R  R  F  T  L  K  T  V  L  M  L  A  D  Q  L  :  I  N  R  V  E  *  M  H  S  R  G  F  L  H  R  D  I  K  P  E  N  F  L  M  G  I  G  R  K  A  N  Q  :  V  Y  M  I  D  Y  A  L  A  N  K  Y  R  D  H  E  T  H  E  H  I  P  F  R :   E  N  K  R  P  T  G  T  A  R  Y  S  S  V  S  T  H  L  G  F   : E  Q  S  R  R  D  D  L  E  C  L  G  Y  V  L  M  Y  F  L  </second_frame>
            <third_frame>   I  M  W  L  V  A  R  I  N  W  V  *  R  L  V  K  D  I  *  R  I  I  W  :  G  *  M  C  K  L  K  K  K  L  L  *  S  W :   N  Q  L  K  Q  N  T  L  T  F  I  M  N  Q  S  C  I  G  F  Y  K  E  E  :  L  G  F  Q  T  S  G  G  L  A  L  K  V  N  T  M  P  W  L  L  T  F  L  G  Q  V  W  K  T  C  L  T  I  A  I  G  G  S  L  *  R  Q  F  *  C  W  Q  I  N  * :   L  I  G  L  N  K  C  T  Q  E  D  F  F  T  V  T  L  S  P  K  T  S  *  W  V  *  G  V  K  Q  I  R :   Y  T  *  L  T  M  L  L  P  T  N  T  E  I  M  R  H  M  S  I  Y  H  S   : G  K  T  K  G  P  Q  E  Q  L  V  I  L  V  L  A  P  I  L  D  L  :  N  K  A  E  E  T  I  W  S  V  L  V  M  C  L  C  I  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65606" stop="65537"/>
                    <exon start="65434" stop="65394"/>
                    <exon start="64789" stop="64720"/>
                    <exon start="64620" stop="64472"/>
                    <exon start="64395" stop="64378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DHVVGGTYKLGLKIGKGYLADYLGVNVQTEEEVAVKLESTKTEHPHLHYESKLYRLLQGGTGIPNVRWFGVEGEYNAMVIDLLGPSLEDLFNYCNRRFTLKTVLMLADQLINRVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64377" stop="64300"/>
                    <exon start="63206" stop="63136"/>
                    <exon start="62495" stop="62434"/>
                    <exon start="62357" stop="62302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHSRGFLHRDIKPENFLMGIGRKANQVYMIDYALANKYRDHETHEHIPFRENKRPTGTARYSSVSTHLGFEQSRRDDLECLGYVLMYFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="77774" PGL_stop="67739"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
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            <exon e_start="72660" e_stop="72581"/>
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            <exon e_start="68335" e_stop="68324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77774" e_stop="77409" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
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          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76478" e_stop="76100" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74897" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74301" e_stop="74218" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
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          </intron>
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          </exon>
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          </intron>
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          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.820">
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          </intron>
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          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.999">
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          </intron>
          <exon e_serial="8" e_score="1.000">
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          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
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          </intron>
          <exon e_serial="9" e_score="1.000">
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          </exon>
          <intron i_serial="9" don_prob="0.497" acc_prob="0.953">
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          </intron>
          <exon e_serial="10" e_score="1.000">
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          </exon>
          <intron i_serial="10" don_prob="0.827" acc_prob="1.000">
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          </intron>
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          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.945">
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          </intron>
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          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="1.000">
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          </intron>
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          </exon>
          <intron i_serial="13" don_prob="0.984" acc_prob="1.000">
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          </intron>
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          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.782">
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          </intron>
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          </exon>
        </exon-intron_info>
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          <PGS_line>
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              <exon start="77774" stop="77409"/>
              <exon start="76478" stop="76280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341356" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="75071" stop="75002"/>
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            <referenceDNA id="SGN-E727486" strand="+"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331186" strand="+"/>
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          <PGS_line>
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              <exon start="77749" stop="77409"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578219" strand="+"/>
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            <referenceDNA id="SGN-E444054" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E366147" strand="+"/>
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            <referenceDNA id="SGN-E269459" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77721" stop="77409"/>
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            <referenceDNA id="SGN-E345167" strand="+"/>
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            <referenceDNA id="SGN-E214593" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E584842" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            <referenceDNA id="SGN-E295464" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207549" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG : GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG : ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG : GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG : GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG : AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT : GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG : GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG : CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTA : ATAATAGAAGAA</gDNA_template>
            <first_frame> S  I  R  K  E  D  K  A  L  S  F  L  S  L  S  L  S  H  I  V  V  C  F  H  G  E  L  M  P  P  K  H  K  V  V  I  P  T  P  T  Q  L  F  F  F  N  *  H  N  I  F  L  T  F  L  F  S  L  F  F  I  F  R  V  F  L  F  I  F  F  I  F  S  T  I  H  N  S  T  V  F  Y  Q  Q  P  N  L  S  D  F  T  W  *  T  K  Y  L  S  F  V  H  F  G  F  C  *  F  G  T  E  Q  A  E  L  G  I  L  E  S  F  F  E  :  A  E  H  S  K  I  G  S  L  W  C  S  K  V  R  F  I  I  D  Y  *  N  T  C  C  R  R  K  K  K  L  L  L  Q  S  S  I  S  C  D  Y  F  S  Y  L  *  *  V  D  *  G  G  G  W  S  L  P  N  D  G  S  V  S  L  A  R  K  I  S  L  S  L  P  R  S  R  K  L  L  V  M  G  K  K  G  R  N  C  R  L  M  R  K  H  L  Q  L  P  L  N  R  K  L  Q  L  P  S  S  T  *  K  N  T  T  R  N  K  *  R  A  C  R  S  V  E  S   : D  A  I  C  L  K  K  N  *  L  M  L  R  F  P  R  K  S  R  A  I  Y  *  S  T  L  R  K  R  R  Q  N  L  C  A  F  K  G  I  K  W  V  L  M  I  L  S  L  *  Q  *  L  E  R  V  H  L  G  R :   L  E  Y  A  G  R  R  Q  L  V  M  S  M  P  *  K  S  *  R  S  Q  K  C  F  V  E  A  R :   L  N  M  L  K  P  K  G  I  C  L  L  K  W  R  A  I  A  L  L  S  Y  I  A  P  S  K  M  R  S  I  F  T  *  *  W  N  I  F  L  V  E  I  *  *  L  C  *  C  A  R  I  L  *  Q  K  M  R  P  G  F  M  W  G  R  P  S  L  L  *  N  L  S  I  N  T  I  I  F  T   : E  I  S  S  L  I  T  Y  Y  L  I  N  M  D  T  *  S  Y  Q  I  L  D  C  V  N  R  W  T  A  V  I  F  R  K  R  I  S  Q  R  Q  I  S  *  V  A  L  F  *  A  M  D  A  Q  P  L  Q  G  A  L  N  R  S  N  Y  C  I  G  R  R  I  G  G  C  L :   L  I  P  L  L  G  H  L  I  T  L  L  Q  R  F  Y  *  R  K  D  M  D  V  N  V  I   : G  G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  :  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P  R  Q  V  N  S  F  R  C  C  V  F  I  T  *  V  Y  S  K  C  K  *  S  I  H  D  E  G  S  F  A  N  S  G  A  T  A  L  V  H  S  L  R  L  F  C  V  N  C  F  L  E  V  H  I  S  F  F  L  L  L  V  C  N  F  A  Y  S  L  S  C  R  N  L  *  P  C  S  C  N  L  F  Q  L  W  V  Y  L  F  Q  *  P  Y  S  L  *  M  N  V  L  A  G  F  F  Y  * :   *  *  K   </first_frame>
            <second_frame>  Q  L  E  K  R  T  K  L  F  P  F  S  L  S  P  S  H  T  L  L  C  V  S  M  V  N  *  C  H  Q  S  T  K  W  S  S  P  L  P  H  N  S  S  S  S  T  N  T  T  S  F  S  L  F  C  F  P  S  F  S  S  L  G  F  S  F  L  F  F  L  F  F  Q  P  F  T  I  Q  L  C  F  T  N  N  P  T  Y  L  I  S  L  G  K  P  N  I  Y  L  L  S  I  L  G  F  V  D  L  A  Q  S  K  Q  N  *  A  F  L  N  H  F  L  R :   Q  S  I  Q  K  L  V  P  Y  G  V  P  K  F  A  L  *  L  I  T  R  I  L  V  V  E  G  R  K  S  C  S  C  R  V  L  S  L  V  I  I  S  P  I  F  S  K  L  T  K  V  E  D  G  V  C  Q  T  M  V  L  *  A  W  Q  E  R  *  A  *  A  S  Q  E  A  G  N  Y  *  *  W  E  R  R  V  E  I  V  A  S  *  G  S  T  F  N  C  H  *  T  E  S  C  S  C  Q  A  V  H  R  K  T  L  Q  G  T  N  E  E  L  A  G  A  *  R  A  :  T  Q  Y  A  *  K  K  I  S  *  C  *  G  F  R  G  R  A  E  Q  F  T  E  V  P  *  E  K  G  D  R  I  Y  A  H  S  K  A  *  N  G  C  *  *  F  *  A  S  D  N  D  W  K  G  C  I  W  G   : G  *  N  M  Q  G  E  G  N  *  S  C  L  C  H  E  K  A  K  E  V  R  N  A  S  *  R  P   : G  *  T  C  *  S  R  K  E  S  A  C  *  S  G  E  Q  L  H  C  *  A  I  L  L  L  P  R  *  G  V  S  L  P  N  N  G  I  S  S  W  W  R  Y  D  D  F  A  D  A  Q  G  Y  F  N  R  R  *  G  Q  V  L  C  G  G  D  R  P  C  Y  R  I  Y  P  *  T  Q  L  Y  S  Q  :  R  Y  Q  A  *  *  L  T  T  *  *  T  W  T  H  E  V  I  R  F  W  I  V  *  T  A  G  L  Q  *  S  S  G  K  G  F  H  S  G  K  *  V  K  W  R  S  S  K  R  W  T  P  S  P  S  K  A  H  S  T  G  A  T  I  A  L  A  E  E  *  E  D  A   : C  L  F  H  C  W  D  T  *  L  H  C  S  R  G  F  I  E  E  R  I  W  M  *  M  *  L  :  V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G :   *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P  L  V  K  S  I  A  F  V  V  V  F  L  *  P  R  C  I  P  S  V  S  K  V  F  T  T  K  A  V  L  Q  I  L  V  Q  L  P  W  F  I  V  C  A  C  F  V  *  I  V  S  W  K  Y  I  Y  H  S  F  C  C  *  F  V  I  L  L  T  H  *  A  A  E  T  C  D  L  V  L  V  I  S  F  N  F  G  F  I  Y  F  N  S  P  I  L  Y  R  *  M  F  L  L  V  F  S  I   : N  N  R  R  </second_frame>
            <third_frame>   N  *  K  R  G  Q  S  S  F  L  S  L  S  L  P  L  T  H  C  C  V  F  P  W  *  I  D  A  T  K  A  Q  S  G  H  P  H  S  H  T  T  L  L  L  Q  L  T  Q  H  L  S  H  F  F  V  F  P  L  F  H  L  *  G  F  P  F  Y  F  F  Y  F  F  N  H  S  Q  F  N  C  V  L  P  T  T  Q  L  I  *  F  H  L  V  N  Q  I  F  I  F  C  P  F  W  V  L  L  I  W  H  R  A  S  R  I  R  H  S  *  I  I  F  *   : G  R  A  F  K  N  W  F  L  M  V  F  Q  S  S  L  Y  N  *  L  L  E  Y  L  L  S  K  E  E  K  V  A  L  A  E  F  Y  L  L  *  L  F  L  L  S  L  V  S  *  L  R  W  R  M  E  S  A  K  R  W  F  C  K  L  G  K  K  D  K  P  K  P  P  K  K  Q  E  T  T  S  N  G  K  E  G  S  K  L  S  P  H  E  E  A  P  S  T  A  T  K  Q  K  V  A  A  A  K  Q  Y  I  E  K  H  Y  K  E  Q  M  K  S  L  Q  E  R  R  E  R :   R  N  M  L  E  K  K  L  A  D  A  E  V  S  E  E  E  Q  S  N  L  L  K  Y  L  E  K  K  E  T  E  F  M  R  I  Q  R  H  K  M  G  A  D  D  F  E  P  L  T  M  I  G  K  G  A  F  G  E  :  V  R  I  C  R  E  K  A  T  S  H  V  Y  A  M  K  K  L  K  K  S  E  M  L  R  R  G  Q  :  V  E  H  V  K  A  E  R  N  L  L  A  E  V  E  S  N  C  I  V  K  L  Y  C  S  F  Q  D  E  E  Y  L  Y  L  I  M  E  Y  L  P  G  G  D  M  M  T  L  L  M  R  K  D  T  L  T  E  D  E  A  R  F  Y  V  G  E  T  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  H  G  H  M  K  L  S  D  F  G  L  C  K  P  L  D  C  S  N  L  Q  E  K  D  F  T  A  A  N  K  L  S  G  A  L  L  S  D  G  R  P  A  P  P  R  R  T  Q  Q  E  Q  L  L  H  W  Q  K  N  R  R  M  L  :  A  Y  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  C  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M   : A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  S  S  S  Q  *  L  S  L  L  C  F  Y  N  L  G  V  F  Q  V  *  V  K  Y  S  R  R  R  Q  F  C  K  F  W  C  N  C  L  G  S  *  F  A  L  V  L  C  K  L  F  L  G  S  T  Y  I  I  L  F  V  A  S  L  *  F  C  L  L  T  K  L  Q  K  L  V  T  L  F  L  *  S  L  S  T  L  G  L  F  I  S  I  A  L  F  S  I  D  E  C  S  C  W  F  F  L  L  :  I  I  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76100"/>
                    <exon start="75071" stop="74897"/>
                    <exon start="74301" stop="74218"/>
                    <exon start="74132" stop="73891"/>
                    <exon start="73765" stop="73546"/>
                    <exon start="72660" stop="72581"/>
                    <exon start="72498" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69854"/>
                    <exon start="69753" stop="69697"/>
                    <exon start="68888" stop="68788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWRMESAKRWFCKLGKKDKPKPPKKQETTSNGKEGSKLSPHEEAPSTATKQKVAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEFMRIQRHKMGADDFEPLTMIGKGAFGEVRICREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDFTAANKLSGALLSDGRPAPPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGCECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMAELKKKSNKAKRPTVKSLFSEDSEATDSQQAHGSFLNLLPPHLESSKQAEQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77692" stop="77432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQSTKWSSPLPHNSSSSTNTTSFSLFCFPSFSSLGFSFLFFLFFQPFTIQLCFTNNPTYLISLGKPNIYLLSILGFVDLAQSKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77774" e_stop="77409"/>
            <exon e_start="76478" e_stop="76100"/>
            <exon e_start="75071" e_stop="74897"/>
            <exon e_start="74301" e_stop="74218"/>
            <exon e_start="74132" e_stop="73891"/>
            <exon e_start="73765" e_stop="73546"/>
            <exon e_start="72660" e_stop="72581"/>
            <exon e_start="72498" e_stop="72414"/>
            <exon e_start="71203" e_stop="71072"/>
            <exon e_start="70984" e_stop="70871"/>
            <exon e_start="70759" e_stop="70712"/>
            <exon e_start="69938" e_stop="69854"/>
            <exon e_start="69753" e_stop="69697"/>
            <exon e_start="68888" e_stop="68399"/>
            <exon e_start="68335" e_stop="68312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.782" e_score="0.962"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77774" e_stop="77409" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76478" e_stop="76100" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74897" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74301" e_stop="74218" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74132" e_stop="73891" e_length="242"/>
          </exon>
          <intron i_serial="5" don_prob="0.680" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73765" e_stop="73546" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.820">
            <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72660" e_stop="72581" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72498" e_stop="72414" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71072" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.497" acc_prob="0.953">
            <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="70984" e_stop="70871" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.827" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="70759" e_stop="70712" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="69938" e_stop="69854" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="69753" e_stop="69697" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808"/>
          </intron>
          <exon e_serial="14" e_score="0.962">
            <gDNA_exon_boundary e_start="68888" e_stop="68399" e_length="490"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="68398" i_stop="68336" i_length="63"/>
          </intron>
          <exon e_serial="15" e_score="0.583">
            <gDNA_exon_boundary e_start="68335" e_stop="68312" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77774" stop="77409"/>
              <exon start="76478" stop="76280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77773" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77755" stop="77409"/>
              <exon start="76478" stop="76265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77743" stop="77409"/>
              <exon start="76478" stop="76282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77740" stop="77409"/>
              <exon start="76478" stop="76420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77721" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77700" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77627" stop="77409"/>
              <exon start="76478" stop="76243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77624" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77585" stop="77409"/>
              <exon start="76478" stop="76163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77461" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76293" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76234" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75038" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74279" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74109" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73967" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73956" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73753" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73723" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73665" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72658" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72433" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71154" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70755" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="68428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68795" stop="68399"/>
              <exon start="68335" stop="68312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341276" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG : GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG : ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG : GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG : GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG : AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT : GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG : GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG : CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATT : ATAATAGAAGAATGGAGAACAAGA</gDNA_template>
            <first_frame> S  I  R  K  E  D  K  A  L  S  F  L  S  L  S  L  S  H  I  V  V  C  F  H  G  E  L  M  P  P  K  H  K  V  V  I  P  T  P  T  Q  L  F  F  F  N  *  H  N  I  F  L  T  F  L  F  S  L  F  F  I  F  R  V  F  L  F  I  F  F  I  F  S  T  I  H  N  S  T  V  F  Y  Q  Q  P  N  L  S  D  F  T  W  *  T  K  Y  L  S  F  V  H  F  G  F  C  *  F  G  T  E  Q  A  E  L  G  I  L  E  S  F  F  E  :  A  E  H  S  K  I  G  S  L  W  C  S  K  V  R  F  I  I  D  Y  *  N  T  C  C  R  R  K  K  K  L  L  L  Q  S  S  I  S  C  D  Y  F  S  Y  L  *  *  V  D  *  G  G  G  W  S  L  P  N  D  G  S  V  S  L  A  R  K  I  S  L  S  L  P  R  S  R  K  L  L  V  M  G  K  K  G  R  N  C  R  L  M  R  K  H  L  Q  L  P  L  N  R  K  L  Q  L  P  S  S  T  *  K  N  T  T  R  N  K  *  R  A  C  R  S  V  E  S   : D  A  I  C  L  K  K  N  *  L  M  L  R  F  P  R  K  S  R  A  I  Y  *  S  T  L  R  K  R  R  Q  N  L  C  A  F  K  G  I  K  W  V  L  M  I  L  S  L  *  Q  *  L  E  R  V  H  L  G  R :   L  E  Y  A  G  R  R  Q  L  V  M  S  M  P  *  K  S  *  R  S  Q  K  C  F  V  E  A  R :   L  N  M  L  K  P  K  G  I  C  L  L  K  W  R  A  I  A  L  L  S  Y  I  A  P  S  K  M  R  S  I  F  T  *  *  W  N  I  F  L  V  E  I  *  *  L  C  *  C  A  R  I  L  *  Q  K  M  R  P  G  F  M  W  G  R  P  S  L  L  *  N  L  S  I  N  T  I  I  F  T   : E  I  S  S  L  I  T  Y  Y  L  I  N  M  D  T  *  S  Y  Q  I  L  D  C  V  N  R  W  T  A  V  I  F  R  K  R  I  S  Q  R  Q  I  S  *  V  A  L  F  *  A  M  D  A  Q  P  L  Q  G  A  L  N  R  S  N  Y  C  I  G  R  R  I  G  G  C  L :   L  I  P  L  L  G  H  L  I  T  L  L  Q  R  F  Y  *  R  K  D  M  D  V  N  V  I   : G  G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  :  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P  R  Q  V  N  S  F  R  C  C  V  F  I  T  *  V  Y  S  K  C  K  *  S  I  H  D  E  G  S  F  A  N  S  G  A  T  A  L  V  H  S  L  R  L  F  C  V  N  C  F  L  E  V  H  I  S  F  F  L  L  L  V  C  N  F  A  Y  S  L  S  C  R  N  L  *  P  C  S  C  N  L  F  Q  L  W  V  Y  L  F  Q  *  P  Y  S  L  *  M  N  V  L  A  G  F  F  Y   : Y  N  R  R  M  E  N  K  </first_frame>
            <second_frame>  Q  L  E  K  R  T  K  L  F  P  F  S  L  S  P  S  H  T  L  L  C  V  S  M  V  N  *  C  H  Q  S  T  K  W  S  S  P  L  P  H  N  S  S  S  S  T  N  T  T  S  F  S  L  F  C  F  P  S  F  S  S  L  G  F  S  F  L  F  F  L  F  F  Q  P  F  T  I  Q  L  C  F  T  N  N  P  T  Y  L  I  S  L  G  K  P  N  I  Y  L  L  S  I  L  G  F  V  D  L  A  Q  S  K  Q  N  *  A  F  L  N  H  F  L  R :   Q  S  I  Q  K  L  V  P  Y  G  V  P  K  F  A  L  *  L  I  T  R  I  L  V  V  E  G  R  K  S  C  S  C  R  V  L  S  L  V  I  I  S  P  I  F  S  K  L  T  K  V  E  D  G  V  C  Q  T  M  V  L  *  A  W  Q  E  R  *  A  *  A  S  Q  E  A  G  N  Y  *  *  W  E  R  R  V  E  I  V  A  S  *  G  S  T  F  N  C  H  *  T  E  S  C  S  C  Q  A  V  H  R  K  T  L  Q  G  T  N  E  E  L  A  G  A  *  R  A  :  T  Q  Y  A  *  K  K  I  S  *  C  *  G  F  R  G  R  A  E  Q  F  T  E  V  P  *  E  K  G  D  R  I  Y  A  H  S  K  A  *  N  G  C  *  *  F  *  A  S  D  N  D  W  K  G  C  I  W  G   : G  *  N  M  Q  G  E  G  N  *  S  C  L  C  H  E  K  A  K  E  V  R  N  A  S  *  R  P   : G  *  T  C  *  S  R  K  E  S  A  C  *  S  G  E  Q  L  H  C  *  A  I  L  L  L  P  R  *  G  V  S  L  P  N  N  G  I  S  S  W  W  R  Y  D  D  F  A  D  A  Q  G  Y  F  N  R  R  *  G  Q  V  L  C  G  G  D  R  P  C  Y  R  I  Y  P  *  T  Q  L  Y  S  Q  :  R  Y  Q  A  *  *  L  T  T  *  *  T  W  T  H  E  V  I  R  F  W  I  V  *  T  A  G  L  Q  *  S  S  G  K  G  F  H  S  G  K  *  V  K  W  R  S  S  K  R  W  T  P  S  P  S  K  A  H  S  T  G  A  T  I  A  L  A  E  E  *  E  D  A   : C  L  F  H  C  W  D  T  *  L  H  C  S  R  G  F  I  E  E  R  I  W  M  *  M  *  L  :  V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G :   *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P  L  V  K  S  I  A  F  V  V  V  F  L  *  P  R  C  I  P  S  V  S  K  V  F  T  T  K  A  V  L  Q  I  L  V  Q  L  P  W  F  I  V  C  A  C  F  V  *  I  V  S  W  K  Y  I  Y  H  S  F  C  C  *  F  V  I  L  L  T  H  *  A  A  E  T  C  D  L  V  L  V  I  S  F  N  F  G  F  I  Y  F  N  S  P  I  L  Y  R  *  M  F  L  L  V  F  S  I  :  I  I  E  E  W  R  T  R </second_frame>
            <third_frame>   N  *  K  R  G  Q  S  S  F  L  S  L  S  L  P  L  T  H  C  C  V  F  P  W  *  I  D  A  T  K  A  Q  S  G  H  P  H  S  H  T  T  L  L  L  Q  L  T  Q  H  L  S  H  F  F  V  F  P  L  F  H  L  *  G  F  P  F  Y  F  F  Y  F  F  N  H  S  Q  F  N  C  V  L  P  T  T  Q  L  I  *  F  H  L  V  N  Q  I  F  I  F  C  P  F  W  V  L  L  I  W  H  R  A  S  R  I  R  H  S  *  I  I  F  *   : G  R  A  F  K  N  W  F  L  M  V  F  Q  S  S  L  Y  N  *  L  L  E  Y  L  L  S  K  E  E  K  V  A  L  A  E  F  Y  L  L  *  L  F  L  L  S  L  V  S  *  L  R  W  R  M  E  S  A  K  R  W  F  C  K  L  G  K  K  D  K  P  K  P  P  K  K  Q  E  T  T  S  N  G  K  E  G  S  K  L  S  P  H  E  E  A  P  S  T  A  T  K  Q  K  V  A  A  A  K  Q  Y  I  E  K  H  Y  K  E  Q  M  K  S  L  Q  E  R  R  E  R :   R  N  M  L  E  K  K  L  A  D  A  E  V  S  E  E  E  Q  S  N  L  L  K  Y  L  E  K  K  E  T  E  F  M  R  I  Q  R  H  K  M  G  A  D  D  F  E  P  L  T  M  I  G  K  G  A  F  G  E  :  V  R  I  C  R  E  K  A  T  S  H  V  Y  A  M  K  K  L  K  K  S  E  M  L  R  R  G  Q  :  V  E  H  V  K  A  E  R  N  L  L  A  E  V  E  S  N  C  I  V  K  L  Y  C  S  F  Q  D  E  E  Y  L  Y  L  I  M  E  Y  L  P  G  G  D  M  M  T  L  L  M  R  K  D  T  L  T  E  D  E  A  R  F  Y  V  G  E  T  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  H  G  H  M  K  L  S  D  F  G  L  C  K  P  L  D  C  S  N  L  Q  E  K  D  F  T  A  A  N  K  L  S  G  A  L  L  S  D  G  R  P  A  P  P  R  R  T  Q  Q  E  Q  L  L  H  W  Q  K  N  R  R  M  L  :  A  Y  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  C  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M   : A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  S  S  S  Q  *  L  S  L  L  C  F  Y  N  L  G  V  F  Q  V  *  V  K  Y  S  R  R  R  Q  F  C  K  F  W  C  N  C  L  G  S  *  F  A  L  V  L  C  K  L  F  L  G  S  T  Y  I  I  L  F  V  A  S  L  *  F  C  L  L  T  K  L  Q  K  L  V  T  L  F  L  *  S  L  S  T  L  G  L  F  I  S  I  A  L  F  S  I  D  E  C  S  C  W  F  F  L  L :   *  *  K  N  G  E  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76100"/>
                    <exon start="75071" stop="74897"/>
                    <exon start="74301" stop="74218"/>
                    <exon start="74132" stop="73891"/>
                    <exon start="73765" stop="73546"/>
                    <exon start="72660" stop="72581"/>
                    <exon start="72498" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69854"/>
                    <exon start="69753" stop="69697"/>
                    <exon start="68888" stop="68788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWRMESAKRWFCKLGKKDKPKPPKKQETTSNGKEGSKLSPHEEAPSTATKQKVAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEFMRIQRHKMGADDFEPLTMIGKGAFGEVRICREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDFTAANKLSGALLSDGRPAPPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGCECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMAELKKKSNKAKRPTVKSLFSEDSEATDSQQAHGSFLNLLPPHLESSKQAEQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77692" stop="77432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQSTKWSSPLPHNSSSSTNTTSFSLFCFPSFSSLGFSFLFFLFFQPFTIQLCFTNNPTYLISLGKPNIYLLSILGFVDLAQSKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77774" e_stop="77409"/>
            <exon e_start="76478" e_stop="76100"/>
            <exon e_start="75071" e_stop="74897"/>
            <exon e_start="74301" e_stop="74218"/>
            <exon e_start="74132" e_stop="73891"/>
            <exon e_start="73765" e_stop="73546"/>
            <exon e_start="72660" e_stop="72581"/>
            <exon e_start="72498" e_stop="72414"/>
            <exon e_start="71203" e_stop="71072"/>
            <exon e_start="70984" e_stop="70871"/>
            <exon e_start="70759" e_stop="70712"/>
            <exon e_start="69938" e_stop="69854"/>
            <exon e_start="69753" e_stop="69697"/>
            <exon e_start="68888" e_stop="68402"/>
            <exon e_start="67759" e_stop="67739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77774" e_stop="77409" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76478" e_stop="76100" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028"/>
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          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74897" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74301" e_stop="74218" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
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          </intron>
          <exon e_serial="5" e_score="1.000">
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          </exon>
          <intron i_serial="5" don_prob="0.680" acc_prob="0.985">
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          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73765" e_stop="73546" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.820">
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          </intron>
          <exon e_serial="7" e_score="1.000">
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          <intron i_serial="7" don_prob="0.962" acc_prob="0.999">
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          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72498" e_stop="72414" e_length="85"/>
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          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
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            <gDNA_exon_boundary e_start="71203" e_stop="71072" e_length="132"/>
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          <intron i_serial="9" don_prob="0.497" acc_prob="0.953">
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          <exon e_serial="10" e_score="1.000">
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          <intron i_serial="10" don_prob="0.827" acc_prob="1.000">
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          </intron>
          <exon e_serial="11" e_score="1.000">
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          <intron i_serial="12" don_prob="0.988" acc_prob="1.000">
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          <intron i_serial="13" don_prob="0.984" acc_prob="1.000">
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          <exon e_serial="14" e_score="1.000">
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          <intron i_serial="14" don_prob="0.000" acc_prob="0.000">
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          </intron>
          <exon e_serial="15" e_score="0.810">
            <gDNA_exon_boundary e_start="67759" e_stop="67739" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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              <exon start="77774" stop="77409"/>
              <exon start="76478" stop="76280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77773" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77755" stop="77409"/>
              <exon start="76478" stop="76265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331186" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77749" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578219" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444054" strand="+"/>
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          <PGS_line>
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              <exon start="76478" stop="76247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419405" strand="+"/>
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          <PGS_line>
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              <exon start="77743" stop="77409"/>
              <exon start="76478" stop="76282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366147" strand="+"/>
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          <PGS_line>
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              <exon start="76478" stop="76420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269459" strand="+"/>
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          <PGS_line>
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              <exon start="77721" stop="77409"/>
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              <exon start="75071" stop="75030"/>
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            <referenceDNA id="SGN-E345167" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E214593" strand="+"/>
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          <PGS_line>
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              <exon start="77627" stop="77409"/>
              <exon start="76478" stop="76243"/>
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          <PGS_line>
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              <exon start="68888" stop="68402"/>
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            <referenceDNA id="SGN-E746283" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E271945" strand="+"/>
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          <PGS_line>
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              <exon start="77585" stop="77409"/>
              <exon start="76478" stop="76163"/>
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            <referenceDNA id="SGN-E468526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="74132" stop="74012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740785" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739993" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="76293" stop="76100"/>
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              <exon start="74301" stop="74218"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76234" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295464" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="75038" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74279" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74109" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
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              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73967" stop="73891"/>
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              <exon start="70984" stop="70949"/>
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            <referenceDNA id="SGN-E574539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73956" stop="73891"/>
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              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73753" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73723" stop="73546"/>
              <exon start="72660" stop="72581"/>
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              <exon start="70984" stop="70975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270307" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="73665" stop="73546"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72658" stop="72581"/>
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              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72498" stop="72414"/>
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              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72433" stop="72414"/>
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              <exon start="69753" stop="69739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70755" stop="70712"/>
              <exon start="69938" stop="69854"/>
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              <exon start="68888" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="68428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609884" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG : GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG : ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG : GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG : GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG : AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT : GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG : GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG : CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCT : AAAATAAAAGAAGAAGAAAAA</gDNA_template>
            <first_frame> S  I  R  K  E  D  K  A  L  S  F  L  S  L  S  L  S  H  I  V  V  C  F  H  G  E  L  M  P  P  K  H  K  V  V  I  P  T  P  T  Q  L  F  F  F  N  *  H  N  I  F  L  T  F  L  F  S  L  F  F  I  F  R  V  F  L  F  I  F  F  I  F  S  T  I  H  N  S  T  V  F  Y  Q  Q  P  N  L  S  D  F  T  W  *  T  K  Y  L  S  F  V  H  F  G  F  C  *  F  G  T  E  Q  A  E  L  G  I  L  E  S  F  F  E  :  A  E  H  S  K  I  G  S  L  W  C  S  K  V  R  F  I  I  D  Y  *  N  T  C  C  R  R  K  K  K  L  L  L  Q  S  S  I  S  C  D  Y  F  S  Y  L  *  *  V  D  *  G  G  G  W  S  L  P  N  D  G  S  V  S  L  A  R  K  I  S  L  S  L  P  R  S  R  K  L  L  V  M  G  K  K  G  R  N  C  R  L  M  R  K  H  L  Q  L  P  L  N  R  K  L  Q  L  P  S  S  T  *  K  N  T  T  R  N  K  *  R  A  C  R  S  V  E  S   : D  A  I  C  L  K  K  N  *  L  M  L  R  F  P  R  K  S  R  A  I  Y  *  S  T  L  R  K  R  R  Q  N  L  C  A  F  K  G  I  K  W  V  L  M  I  L  S  L  *  Q  *  L  E  R  V  H  L  G  R :   L  E  Y  A  G  R  R  Q  L  V  M  S  M  P  *  K  S  *  R  S  Q  K  C  F  V  E  A  R :   L  N  M  L  K  P  K  G  I  C  L  L  K  W  R  A  I  A  L  L  S  Y  I  A  P  S  K  M  R  S  I  F  T  *  *  W  N  I  F  L  V  E  I  *  *  L  C  *  C  A  R  I  L  *  Q  K  M  R  P  G  F  M  W  G  R  P  S  L  L  *  N  L  S  I  N  T  I  I  F  T   : E  I  S  S  L  I  T  Y  Y  L  I  N  M  D  T  *  S  Y  Q  I  L  D  C  V  N  R  W  T  A  V  I  F  R  K  R  I  S  Q  R  Q  I  S  *  V  A  L  F  *  A  M  D  A  Q  P  L  Q  G  A  L  N  R  S  N  Y  C  I  G  R  R  I  G  G  C  L :   L  I  P  L  L  G  H  L  I  T  L  L  Q  R  F  Y  *  R  K  D  M  D  V  N  V  I   : G  G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  :  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P  R  Q  V  N  S  F  R  C  C  V  F  I  T  *  V  Y  S  K  C  K  *  S  I  H  D  E  G  S  F  A  N  S  G  A  T  A  L  V  H  S  L  R  L  F  C  V  N  C  F  L  E  V  H  I  S  F  F  L  L  L  V  C  N  F  A  Y  S  L  S  C  R  N  L  *  P  C  S  C  N  L  F  Q  L  W  V  Y  L  F  Q  *  P  Y  S  L  *  M  N  V  L  A  G  F  F   : *  N  K  R  R  R  K  </first_frame>
            <second_frame>  Q  L  E  K  R  T  K  L  F  P  F  S  L  S  P  S  H  T  L  L  C  V  S  M  V  N  *  C  H  Q  S  T  K  W  S  S  P  L  P  H  N  S  S  S  S  T  N  T  T  S  F  S  L  F  C  F  P  S  F  S  S  L  G  F  S  F  L  F  F  L  F  F  Q  P  F  T  I  Q  L  C  F  T  N  N  P  T  Y  L  I  S  L  G  K  P  N  I  Y  L  L  S  I  L  G  F  V  D  L  A  Q  S  K  Q  N  *  A  F  L  N  H  F  L  R :   Q  S  I  Q  K  L  V  P  Y  G  V  P  K  F  A  L  *  L  I  T  R  I  L  V  V  E  G  R  K  S  C  S  C  R  V  L  S  L  V  I  I  S  P  I  F  S  K  L  T  K  V  E  D  G  V  C  Q  T  M  V  L  *  A  W  Q  E  R  *  A  *  A  S  Q  E  A  G  N  Y  *  *  W  E  R  R  V  E  I  V  A  S  *  G  S  T  F  N  C  H  *  T  E  S  C  S  C  Q  A  V  H  R  K  T  L  Q  G  T  N  E  E  L  A  G  A  *  R  A  :  T  Q  Y  A  *  K  K  I  S  *  C  *  G  F  R  G  R  A  E  Q  F  T  E  V  P  *  E  K  G  D  R  I  Y  A  H  S  K  A  *  N  G  C  *  *  F  *  A  S  D  N  D  W  K  G  C  I  W  G   : G  *  N  M  Q  G  E  G  N  *  S  C  L  C  H  E  K  A  K  E  V  R  N  A  S  *  R  P   : G  *  T  C  *  S  R  K  E  S  A  C  *  S  G  E  Q  L  H  C  *  A  I  L  L  L  P  R  *  G  V  S  L  P  N  N  G  I  S  S  W  W  R  Y  D  D  F  A  D  A  Q  G  Y  F  N  R  R  *  G  Q  V  L  C  G  G  D  R  P  C  Y  R  I  Y  P  *  T  Q  L  Y  S  Q  :  R  Y  Q  A  *  *  L  T  T  *  *  T  W  T  H  E  V  I  R  F  W  I  V  *  T  A  G  L  Q  *  S  S  G  K  G  F  H  S  G  K  *  V  K  W  R  S  S  K  R  W  T  P  S  P  S  K  A  H  S  T  G  A  T  I  A  L  A  E  E  *  E  D  A   : C  L  F  H  C  W  D  T  *  L  H  C  S  R  G  F  I  E  E  R  I  W  M  *  M  *  L  :  V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G :   *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P  L  V  K  S  I  A  F  V  V  V  F  L  *  P  R  C  I  P  S  V  S  K  V  F  T  T  K  A  V  L  Q  I  L  V  Q  L  P  W  F  I  V  C  A  C  F  V  *  I  V  S  W  K  Y  I  Y  H  S  F  C  C  *  F  V  I  L  L  T  H  *  A  A  E  T  C  D  L  V  L  V  I  S  F  N  F  G  F  I  Y  F  N  S  P  I  L  Y  R  *  M  F  L  L  V  F  S  :  K  I  K  E  E  E  K </second_frame>
            <third_frame>   N  *  K  R  G  Q  S  S  F  L  S  L  S  L  P  L  T  H  C  C  V  F  P  W  *  I  D  A  T  K  A  Q  S  G  H  P  H  S  H  T  T  L  L  L  Q  L  T  Q  H  L  S  H  F  F  V  F  P  L  F  H  L  *  G  F  P  F  Y  F  F  Y  F  F  N  H  S  Q  F  N  C  V  L  P  T  T  Q  L  I  *  F  H  L  V  N  Q  I  F  I  F  C  P  F  W  V  L  L  I  W  H  R  A  S  R  I  R  H  S  *  I  I  F  *   : G  R  A  F  K  N  W  F  L  M  V  F  Q  S  S  L  Y  N  *  L  L  E  Y  L  L  S  K  E  E  K  V  A  L  A  E  F  Y  L  L  *  L  F  L  L  S  L  V  S  *  L  R  W  R  M  E  S  A  K  R  W  F  C  K  L  G  K  K  D  K  P  K  P  P  K  K  Q  E  T  T  S  N  G  K  E  G  S  K  L  S  P  H  E  E  A  P  S  T  A  T  K  Q  K  V  A  A  A  K  Q  Y  I  E  K  H  Y  K  E  Q  M  K  S  L  Q  E  R  R  E  R :   R  N  M  L  E  K  K  L  A  D  A  E  V  S  E  E  E  Q  S  N  L  L  K  Y  L  E  K  K  E  T  E  F  M  R  I  Q  R  H  K  M  G  A  D  D  F  E  P  L  T  M  I  G  K  G  A  F  G  E  :  V  R  I  C  R  E  K  A  T  S  H  V  Y  A  M  K  K  L  K  K  S  E  M  L  R  R  G  Q  :  V  E  H  V  K  A  E  R  N  L  L  A  E  V  E  S  N  C  I  V  K  L  Y  C  S  F  Q  D  E  E  Y  L  Y  L  I  M  E  Y  L  P  G  G  D  M  M  T  L  L  M  R  K  D  T  L  T  E  D  E  A  R  F  Y  V  G  E  T  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  H  G  H  M  K  L  S  D  F  G  L  C  K  P  L  D  C  S  N  L  Q  E  K  D  F  T  A  A  N  K  L  S  G  A  L  L  S  D  G  R  P  A  P  P  R  R  T  Q  Q  E  Q  L  L  H  W  Q  K  N  R  R  M  L  :  A  Y  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  C  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M   : A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  S  S  S  Q  *  L  S  L  L  C  F  Y  N  L  G  V  F  Q  V  *  V  K  Y  S  R  R  R  Q  F  C  K  F  W  C  N  C  L  G  S  *  F  A  L  V  L  C  K  L  F  L  G  S  T  Y  I  I  L  F  V  A  S  L  *  F  C  L  L  T  K  L  Q  K  L  V  T  L  F  L  *  S  L  S  T  L  G  L  F  I  S  I  A  L  F  S  I  D  E  C  S  C  W  F  F  L :   K  *  K  K  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76100"/>
                    <exon start="75071" stop="74897"/>
                    <exon start="74301" stop="74218"/>
                    <exon start="74132" stop="73891"/>
                    <exon start="73765" stop="73546"/>
                    <exon start="72660" stop="72581"/>
                    <exon start="72498" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69854"/>
                    <exon start="69753" stop="69697"/>
                    <exon start="68888" stop="68788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWRMESAKRWFCKLGKKDKPKPPKKQETTSNGKEGSKLSPHEEAPSTATKQKVAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEFMRIQRHKMGADDFEPLTMIGKGAFGEVRICREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDFTAANKLSGALLSDGRPAPPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGCECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMAELKKKSNKAKRPTVKSLFSEDSEATDSQQAHGSFLNLLPPHLESSKQAEQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77692" stop="77432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQSTKWSSPLPHNSSSSTNTTSFSLFCFPSFSSLGFSFLFFLFFQPFTIQLCFTNNPTYLISLGKPNIYLLSILGFVDLAQSKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="77774" e_stop="77409"/>
            <exon e_start="76478" e_stop="76100"/>
            <exon e_start="75071" e_stop="74897"/>
            <exon e_start="74301" e_stop="74218"/>
            <exon e_start="74132" e_stop="73891"/>
            <exon e_start="73765" e_stop="73546"/>
            <exon e_start="72660" e_stop="72581"/>
            <exon e_start="72498" e_stop="72414"/>
            <exon e_start="71203" e_stop="71072"/>
            <exon e_start="70984" e_stop="70871"/>
            <exon e_start="70759" e_stop="70712"/>
            <exon e_start="69938" e_stop="69854"/>
            <exon e_start="69753" e_stop="69697"/>
            <exon e_start="68888" e_stop="68480"/>
            <exon e_start="68335" e_stop="68329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.396" acc_prob="0.782" e_score="0.961"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77774" e_stop="77409" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76478" e_stop="76100" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74897" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74301" e_stop="74218" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74132" e_stop="73891" e_length="242"/>
          </exon>
          <intron i_serial="5" don_prob="0.680" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73765" e_stop="73546" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.820">
            <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72660" e_stop="72581" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72498" e_stop="72414" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71072" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.497" acc_prob="0.953">
            <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="70984" e_stop="70871" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.827" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
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          <intron i_serial="11" don_prob="0.997" acc_prob="0.945">
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          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="69938" e_stop="69854" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="1.000">
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          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="69753" e_stop="69697" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.984" acc_prob="1.000">
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          </intron>
          <exon e_serial="14" e_score="0.961">
            <gDNA_exon_boundary e_start="68888" e_stop="68480" e_length="409"/>
          </exon>
          <intron i_serial="14" don_prob="0.396" acc_prob="0.782">
            <gDNA_intron_boundary i_start="68479" i_stop="68336" i_length="144"/>
          </intron>
          <exon e_serial="15" e_score="0.571">
            <gDNA_exon_boundary e_start="68335" e_stop="68329" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77774" stop="77409"/>
              <exon start="76478" stop="76280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341356" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77773" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77755" stop="77409"/>
              <exon start="76478" stop="76265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578219" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419405" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77743" stop="77409"/>
              <exon start="76478" stop="76282"/>
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            <referenceDNA id="SGN-E366147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269459" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77721" stop="77409"/>
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              <exon start="75071" stop="75030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345167" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="77700" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74995"/>
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            <referenceDNA id="SGN-E214593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77627" stop="77409"/>
              <exon start="76478" stop="76243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77624" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77585" stop="77409"/>
              <exon start="76478" stop="76163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77461" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740785" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76293" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76234" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295464" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="75038" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74279" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74109" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73967" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73956" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73753" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73723" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73665" stop="73546"/>
              <exon start="72660" stop="72581"/>
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              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72658" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
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              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72433" stop="72414"/>
              <exon start="71203" stop="71072"/>
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              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71154" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
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              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70944" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68480"/>
              <exon start="68335" stop="68329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70755" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG : GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG : ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG : GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG : GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG : AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT : GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG : GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG : CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTT : ATAATAG</gDNA_template>
            <first_frame> S  I  R  K  E  D  K  A  L  S  F  L  S  L  S  L  S  H  I  V  V  C  F  H  G  E  L  M  P  P  K  H  K  V  V  I  P  T  P  T  Q  L  F  F  F  N  *  H  N  I  F  L  T  F  L  F  S  L  F  F  I  F  R  V  F  L  F  I  F  F  I  F  S  T  I  H  N  S  T  V  F  Y  Q  Q  P  N  L  S  D  F  T  W  *  T  K  Y  L  S  F  V  H  F  G  F  C  *  F  G  T  E  Q  A  E  L  G  I  L  E  S  F  F  E  :  A  E  H  S  K  I  G  S  L  W  C  S  K  V  R  F  I  I  D  Y  *  N  T  C  C  R  R  K  K  K  L  L  L  Q  S  S  I  S  C  D  Y  F  S  Y  L  *  *  V  D  *  G  G  G  W  S  L  P  N  D  G  S  V  S  L  A  R  K  I  S  L  S  L  P  R  S  R  K  L  L  V  M  G  K  K  G  R  N  C  R  L  M  R  K  H  L  Q  L  P  L  N  R  K  L  Q  L  P  S  S  T  *  K  N  T  T  R  N  K  *  R  A  C  R  S  V  E  S   : D  A  I  C  L  K  K  N  *  L  M  L  R  F  P  R  K  S  R  A  I  Y  *  S  T  L  R  K  R  R  Q  N  L  C  A  F  K  G  I  K  W  V  L  M  I  L  S  L  *  Q  *  L  E  R  V  H  L  G  R :   L  E  Y  A  G  R  R  Q  L  V  M  S  M  P  *  K  S  *  R  S  Q  K  C  F  V  E  A  R :   L  N  M  L  K  P  K  G  I  C  L  L  K  W  R  A  I  A  L  L  S  Y  I  A  P  S  K  M  R  S  I  F  T  *  *  W  N  I  F  L  V  E  I  *  *  L  C  *  C  A  R  I  L  *  Q  K  M  R  P  G  F  M  W  G  R  P  S  L  L  *  N  L  S  I  N  T  I  I  F  T   : E  I  S  S  L  I  T  Y  Y  L  I  N  M  D  T  *  S  Y  Q  I  L  D  C  V  N  R  W  T  A  V  I  F  R  K  R  I  S  Q  R  Q  I  S  *  V  A  L  F  *  A  M  D  A  Q  P  L  Q  G  A  L  N  R  S  N  Y  C  I  G  R  R  I  G  G  C  L :   L  I  P  L  L  G  H  L  I  T  L  L  Q  R  F  Y  *  R  K  D  M  D  V  N  V  I   : G  G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  :  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P  R  Q  V  N  S  F  R  C  C  V  F  I  T  *  V  Y  S  K  C  K  *  S  I  H  D  E  G  S  F  A  N  S  G  A  T  A  L  V  H  S  L  R  L  F  C  V  N  C  F  L  E  V  H  I  S  F  F  L  L  L  V  C  N  F  A  Y  S  L  S  C  R  N  L  *  P  C  S   : Y  N   </first_frame>
            <second_frame>  Q  L  E  K  R  T  K  L  F  P  F  S  L  S  P  S  H  T  L  L  C  V  S  M  V  N  *  C  H  Q  S  T  K  W  S  S  P  L  P  H  N  S  S  S  S  T  N  T  T  S  F  S  L  F  C  F  P  S  F  S  S  L  G  F  S  F  L  F  F  L  F  F  Q  P  F  T  I  Q  L  C  F  T  N  N  P  T  Y  L  I  S  L  G  K  P  N  I  Y  L  L  S  I  L  G  F  V  D  L  A  Q  S  K  Q  N  *  A  F  L  N  H  F  L  R :   Q  S  I  Q  K  L  V  P  Y  G  V  P  K  F  A  L  *  L  I  T  R  I  L  V  V  E  G  R  K  S  C  S  C  R  V  L  S  L  V  I  I  S  P  I  F  S  K  L  T  K  V  E  D  G  V  C  Q  T  M  V  L  *  A  W  Q  E  R  *  A  *  A  S  Q  E  A  G  N  Y  *  *  W  E  R  R  V  E  I  V  A  S  *  G  S  T  F  N  C  H  *  T  E  S  C  S  C  Q  A  V  H  R  K  T  L  Q  G  T  N  E  E  L  A  G  A  *  R  A  :  T  Q  Y  A  *  K  K  I  S  *  C  *  G  F  R  G  R  A  E  Q  F  T  E  V  P  *  E  K  G  D  R  I  Y  A  H  S  K  A  *  N  G  C  *  *  F  *  A  S  D  N  D  W  K  G  C  I  W  G   : G  *  N  M  Q  G  E  G  N  *  S  C  L  C  H  E  K  A  K  E  V  R  N  A  S  *  R  P   : G  *  T  C  *  S  R  K  E  S  A  C  *  S  G  E  Q  L  H  C  *  A  I  L  L  L  P  R  *  G  V  S  L  P  N  N  G  I  S  S  W  W  R  Y  D  D  F  A  D  A  Q  G  Y  F  N  R  R  *  G  Q  V  L  C  G  G  D  R  P  C  Y  R  I  Y  P  *  T  Q  L  Y  S  Q  :  R  Y  Q  A  *  *  L  T  T  *  *  T  W  T  H  E  V  I  R  F  W  I  V  *  T  A  G  L  Q  *  S  S  G  K  G  F  H  S  G  K  *  V  K  W  R  S  S  K  R  W  T  P  S  P  S  K  A  H  S  T  G  A  T  I  A  L  A  E  E  *  E  D  A   : C  L  F  H  C  W  D  T  *  L  H  C  S  R  G  F  I  E  E  R  I  W  M  *  M  *  L  :  V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G :   *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P  L  V  K  S  I  A  F  V  V  V  F  L  *  P  R  C  I  P  S  V  S  K  V  F  T  T  K  A  V  L  Q  I  L  V  Q  L  P  W  F  I  V  C  A  C  F  V  *  I  V  S  W  K  Y  I  Y  H  S  F  C  C  *  F  V  I  L  L  T  H  *  A  A  E  T  C  D  L  V  L  :  I  I  </second_frame>
            <third_frame>   N  *  K  R  G  Q  S  S  F  L  S  L  S  L  P  L  T  H  C  C  V  F  P  W  *  I  D  A  T  K  A  Q  S  G  H  P  H  S  H  T  T  L  L  L  Q  L  T  Q  H  L  S  H  F  F  V  F  P  L  F  H  L  *  G  F  P  F  Y  F  F  Y  F  F  N  H  S  Q  F  N  C  V  L  P  T  T  Q  L  I  *  F  H  L  V  N  Q  I  F  I  F  C  P  F  W  V  L  L  I  W  H  R  A  S  R  I  R  H  S  *  I  I  F  *   : G  R  A  F  K  N  W  F  L  M  V  F  Q  S  S  L  Y  N  *  L  L  E  Y  L  L  S  K  E  E  K  V  A  L  A  E  F  Y  L  L  *  L  F  L  L  S  L  V  S  *  L  R  W  R  M  E  S  A  K  R  W  F  C  K  L  G  K  K  D  K  P  K  P  P  K  K  Q  E  T  T  S  N  G  K  E  G  S  K  L  S  P  H  E  E  A  P  S  T  A  T  K  Q  K  V  A  A  A  K  Q  Y  I  E  K  H  Y  K  E  Q  M  K  S  L  Q  E  R  R  E  R :   R  N  M  L  E  K  K  L  A  D  A  E  V  S  E  E  E  Q  S  N  L  L  K  Y  L  E  K  K  E  T  E  F  M  R  I  Q  R  H  K  M  G  A  D  D  F  E  P  L  T  M  I  G  K  G  A  F  G  E  :  V  R  I  C  R  E  K  A  T  S  H  V  Y  A  M  K  K  L  K  K  S  E  M  L  R  R  G  Q  :  V  E  H  V  K  A  E  R  N  L  L  A  E  V  E  S  N  C  I  V  K  L  Y  C  S  F  Q  D  E  E  Y  L  Y  L  I  M  E  Y  L  P  G  G  D  M  M  T  L  L  M  R  K  D  T  L  T  E  D  E  A  R  F  Y  V  G  E  T  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  H  G  H  M  K  L  S  D  F  G  L  C  K  P  L  D  C  S  N  L  Q  E  K  D  F  T  A  A  N  K  L  S  G  A  L  L  S  D  G  R  P  A  P  P  R  R  T  Q  Q  E  Q  L  L  H  W  Q  K  N  R  R  M  L  :  A  Y  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  C  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M   : A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  S  S  S  Q  *  L  S  L  L  C  F  Y  N  L  G  V  F  Q  V  *  V  K  Y  S  R  R  R  Q  F  C  K  F  W  C  N  C  L  G  S  *  F  A  L  V  L  C  K  L  F  L  G  S  T  Y  I  I  L  F  V  A  S  L  *  F  C  L  L  T  K  L  Q  K  L  V  T  L  F  L :   *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76100"/>
                    <exon start="75071" stop="74897"/>
                    <exon start="74301" stop="74218"/>
                    <exon start="74132" stop="73891"/>
                    <exon start="73765" stop="73546"/>
                    <exon start="72660" stop="72581"/>
                    <exon start="72498" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69854"/>
                    <exon start="69753" stop="69697"/>
                    <exon start="68888" stop="68788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWRMESAKRWFCKLGKKDKPKPPKKQETTSNGKEGSKLSPHEEAPSTATKQKVAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEFMRIQRHKMGADDFEPLTMIGKGAFGEVRICREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDFTAANKLSGALLSDGRPAPPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGCECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMAELKKKSNKAKRPTVKSLFSEDSEATDSQQAHGSFLNLLPPHLESSKQAEQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77692" stop="77432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQSTKWSSPLPHNSSSSTNTTSFSLFCFPSFSSLGFSFLFFLFFQPFTIQLCFTNNPTYLISLGKPNIYLLSILGFVDLAQSKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="77774" e_stop="77409"/>
            <exon e_start="76478" e_stop="76100"/>
            <exon e_start="75071" e_stop="74897"/>
            <exon e_start="74301" e_stop="74218"/>
            <exon e_start="74132" e_stop="73891"/>
            <exon e_start="73765" e_stop="73546"/>
            <exon e_start="72660" e_stop="72581"/>
            <exon e_start="72498" e_stop="72414"/>
            <exon e_start="71203" e_stop="71072"/>
            <exon e_start="70984" e_stop="70871"/>
            <exon e_start="70759" e_stop="70712"/>
            <exon e_start="69938" e_stop="69697"/>
            <exon e_start="68888" e_stop="68398"/>
            <exon e_start="68335" e_stop="68324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77774" e_stop="77409" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76478" e_stop="76100" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74897" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74301" e_stop="74218" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74132" e_stop="73891" e_length="242"/>
          </exon>
          <intron i_serial="5" don_prob="0.680" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73765" e_stop="73546" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.820">
            <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72660" e_stop="72581" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72498" e_stop="72414" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71072" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.497" acc_prob="0.953">
            <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="70984" e_stop="70871" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.827" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="70759" e_stop="70712" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="69938" e_stop="69697" e_length="242"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="68888" e_stop="68398" e_length="491"/>
          </exon>
          <intron i_serial="13" don_prob="0.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="68397" i_stop="68336" i_length="62"/>
          </intron>
          <exon e_serial="14" e_score="0.667">
            <gDNA_exon_boundary e_start="68335" e_stop="68324" e_length="12"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77774" stop="77409"/>
              <exon start="76478" stop="76280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77773" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77755" stop="77409"/>
              <exon start="76478" stop="76265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77749" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77744" stop="77409"/>
              <exon start="76478" stop="76247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77743" stop="77409"/>
              <exon start="76478" stop="76282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77740" stop="77409"/>
              <exon start="76478" stop="76420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77721" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77700" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77627" stop="77409"/>
              <exon start="76478" stop="76243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77624" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="75038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77585" stop="77409"/>
              <exon start="76478" stop="76163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77461" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76293" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="74078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76234" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75038" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74279" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74109" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73967" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73956" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73753" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73723" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73665" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72658" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72476" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69697"/>
              <exon start="68888" stop="68712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72476" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69697"/>
              <exon start="68888" stop="68830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69751" stop="69697"/>
              <exon start="68888" stop="68398"/>
              <exon start="68335" stop="68324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68870" stop="68428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68822" stop="68398"/>
              <exon start="68335" stop="68327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG : GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG : ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG : GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG : GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG : AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT : GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG : GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTA : ATAATAGAAGAA</gDNA_template>
            <first_frame> S  I  R  K  E  D  K  A  L  S  F  L  S  L  S  L  S  H  I  V  V  C  F  H  G  E  L  M  P  P  K  H  K  V  V  I  P  T  P  T  Q  L  F  F  F  N  *  H  N  I  F  L  T  F  L  F  S  L  F  F  I  F  R  V  F  L  F  I  F  F  I  F  S  T  I  H  N  S  T  V  F  Y  Q  Q  P  N  L  S  D  F  T  W  *  T  K  Y  L  S  F  V  H  F  G  F  C  *  F  G  T  E  Q  A  E  L  G  I  L  E  S  F  F  E  :  A  E  H  S  K  I  G  S  L  W  C  S  K  V  R  F  I  I  D  Y  *  N  T  C  C  R  R  K  K  K  L  L  L  Q  S  S  I  S  C  D  Y  F  S  Y  L  *  *  V  D  *  G  G  G  W  S  L  P  N  D  G  S  V  S  L  A  R  K  I  S  L  S  L  P  R  S  R  K  L  L  V  M  G  K  K  G  R  N  C  R  L  M  R  K  H  L  Q  L  P  L  N  R  K  L  Q  L  P  S  S  T  *  K  N  T  T  R  N  K  *  R  A  C  R  S  V  E  S   : D  A  I  C  L  K  K  N  *  L  M  L  R  F  P  R  K  S  R  A  I  Y  *  S  T  L  R  K  R  R  Q  N  L  C  A  F  K  G  I  K  W  V  L  M  I  L  S  L  *  Q  *  L  E  R  V  H  L  G  R :   L  E  Y  A  G  R  R  Q  L  V  M  S  M  P  *  K  S  *  R  S  Q  K  C  F  V  E  A  R :   L  N  M  L  K  P  K  G  I  C  L  L  K  W  R  A  I  A  L  L  S  Y  I  A  P  S  K  M  R  S  I  F  T  *  *  W  N  I  F  L  V  E  I  *  *  L  C  *  C  A  R  I  L  *  Q  K  M  R  P  G  F  M  W  G  R  P  S  L  L  *  N  L  S  I  N  T  I  I  F  T   : E  I  S  S  L  I  T  Y  Y  L  I  N  M  D  T  *  S  Y  Q  I  L  D  C  V  N  R  W  T  A  V  I  F  R  K  R  I  S  Q  R  Q  I  S  *  V  A  L  F  *  A  M  D  A  Q  P  L  Q  G  A  L  N  R  S  N  Y  C  I  G  R  R  I  G  G  C  L :   L  I  P  L  L  G  H  L  I  T  L  L  Q  R  F  Y  *  R  K  D  M  D  V  N  V  I   : G  G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  V  L  I  L  S  L  Q  *  I  I  I  I  R  F  I  L  F  V  F  F  S  L  C  L  F  *  N  V  Y  F  C  F  S  A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  S  S  S  Q  *  L  S  L  L  C  F  Y  N  L  G  V  F  Q  V  *  V  K  Y  S  R  R  R  Q  F  C  K  F  W  C  N  C  L  G  S  *  F  A  L  V  L  C  K  L  F  L  G  S  T  Y  I  I  L  F  V  A  S  L  *  F  C  L  L  T  K  L  Q  K  L  V  T  L  F  L  *  S  L  S  T  L  G  L  F  I  S  I  A  L  F  S  I  D  E  C  S  C  W  F  F  L  L  :  I  I  E  E </first_frame>
            <second_frame>  Q  L  E  K  R  T  K  L  F  P  F  S  L  S  P  S  H  T  L  L  C  V  S  M  V  N  *  C  H  Q  S  T  K  W  S  S  P  L  P  H  N  S  S  S  S  T  N  T  T  S  F  S  L  F  C  F  P  S  F  S  S  L  G  F  S  F  L  F  F  L  F  F  Q  P  F  T  I  Q  L  C  F  T  N  N  P  T  Y  L  I  S  L  G  K  P  N  I  Y  L  L  S  I  L  G  F  V  D  L  A  Q  S  K  Q  N  *  A  F  L  N  H  F  L  R :   Q  S  I  Q  K  L  V  P  Y  G  V  P  K  F  A  L  *  L  I  T  R  I  L  V  V  E  G  R  K  S  C  S  C  R  V  L  S  L  V  I  I  S  P  I  F  S  K  L  T  K  V  E  D  G  V  C  Q  T  M  V  L  *  A  W  Q  E  R  *  A  *  A  S  Q  E  A  G  N  Y  *  *  W  E  R  R  V  E  I  V  A  S  *  G  S  T  F  N  C  H  *  T  E  S  C  S  C  Q  A  V  H  R  K  T  L  Q  G  T  N  E  E  L  A  G  A  *  R  A  :  T  Q  Y  A  *  K  K  I  S  *  C  *  G  F  R  G  R  A  E  Q  F  T  E  V  P  *  E  K  G  D  R  I  Y  A  H  S  K  A  *  N  G  C  *  *  F  *  A  S  D  N  D  W  K  G  C  I  W  G   : G  *  N  M  Q  G  E  G  N  *  S  C  L  C  H  E  K  A  K  E  V  R  N  A  S  *  R  P   : G  *  T  C  *  S  R  K  E  S  A  C  *  S  G  E  Q  L  H  C  *  A  I  L  L  L  P  R  *  G  V  S  L  P  N  N  G  I  S  S  W  W  R  Y  D  D  F  A  D  A  Q  G  Y  F  N  R  R  *  G  Q  V  L  C  G  G  D  R  P  C  Y  R  I  Y  P  *  T  Q  L  Y  S  Q  :  R  Y  Q  A  *  *  L  T  T  *  *  T  W  T  H  E  V  I  R  F  W  I  V  *  T  A  G  L  Q  *  S  S  G  K  G  F  H  S  G  K  *  V  K  W  R  S  S  K  R  W  T  P  S  P  S  K  A  H  S  T  G  A  T  I  A  L  A  E  E  *  E  D  A   : C  L  F  H  C  W  D  T  *  L  H  C  S  R  G  F  I  E  E  R  I  W  M  *  M  *  L  :  V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G  Y  L  F  C  P  C  S  R  L  *  S  F  D  L  S  C  L  S  F  S  V  C  V  C  F  E  M  F  I  S  V  F  Q  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P  R  Q  V  N  S  F  R  C  C  V  F  I  T  *  V  Y  S  K  C  K  *  S  I  H  D  E  G  S  F  A  N  S  G  A  T  A  L  V  H  S  L  R  L  F  C  V  N  C  F  L  E  V  H  I  S  F  F  L  L  L  V  C  N  F  A  Y  S  L  S  C  R  N  L  *  P  C  S  C  N  L  F  Q  L  W  V  Y  L  F  Q  *  P  Y  S  L  *  M  N  V  L  A  G  F  F  Y  * :   *  *  K   </second_frame>
            <third_frame>   N  *  K  R  G  Q  S  S  F  L  S  L  S  L  P  L  T  H  C  C  V  F  P  W  *  I  D  A  T  K  A  Q  S  G  H  P  H  S  H  T  T  L  L  L  Q  L  T  Q  H  L  S  H  F  F  V  F  P  L  F  H  L  *  G  F  P  F  Y  F  F  Y  F  F  N  H  S  Q  F  N  C  V  L  P  T  T  Q  L  I  *  F  H  L  V  N  Q  I  F  I  F  C  P  F  W  V  L  L  I  W  H  R  A  S  R  I  R  H  S  *  I  I  F  *   : G  R  A  F  K  N  W  F  L  M  V  F  Q  S  S  L  Y  N  *  L  L  E  Y  L  L  S  K  E  E  K  V  A  L  A  E  F  Y  L  L  *  L  F  L  L  S  L  V  S  *  L  R  W  R  M  E  S  A  K  R  W  F  C  K  L  G  K  K  D  K  P  K  P  P  K  K  Q  E  T  T  S  N  G  K  E  G  S  K  L  S  P  H  E  E  A  P  S  T  A  T  K  Q  K  V  A  A  A  K  Q  Y  I  E  K  H  Y  K  E  Q  M  K  S  L  Q  E  R  R  E  R :   R  N  M  L  E  K  K  L  A  D  A  E  V  S  E  E  E  Q  S  N  L  L  K  Y  L  E  K  K  E  T  E  F  M  R  I  Q  R  H  K  M  G  A  D  D  F  E  P  L  T  M  I  G  K  G  A  F  G  E  :  V  R  I  C  R  E  K  A  T  S  H  V  Y  A  M  K  K  L  K  K  S  E  M  L  R  R  G  Q  :  V  E  H  V  K  A  E  R  N  L  L  A  E  V  E  S  N  C  I  V  K  L  Y  C  S  F  Q  D  E  E  Y  L  Y  L  I  M  E  Y  L  P  G  G  D  M  M  T  L  L  M  R  K  D  T  L  T  E  D  E  A  R  F  Y  V  G  E  T  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  H  G  H  M  K  L  S  D  F  G  L  C  K  P  L  D  C  S  N  L  Q  E  K  D  F  T  A  A  N  K  L  S  G  A  L  L  S  D  G  R  P  A  P  P  R  R  T  Q  Q  E  Q  L  L  H  W  Q  K  N  R  R  M  L  :  A  Y  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  C  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M  G  T  Y  S  V  L  A  V  D  Y  N  H  S  I  Y  L  V  C  L  F  Q  F  V  F  V  L  K  C  L  F  L  F  F  S  *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P  L  V  K  S  I  A  F  V  V  V  F  L  *  P  R  C  I  P  S  V  S  K  V  F  T  T  K  A  V  L  Q  I  L  V  Q  L  P  W  F  I  V  C  A  C  F  V  *  I  V  S  W  K  Y  I  Y  H  S  F  C  C  *  F  V  I  L  L  T  H  *  A  A  E  T  C  D  L  V  L  V  I  S  F  N  F  G  F  I  Y  F  N  S  P  I  L  Y  R  *  M  F  L  L  V  F  S  I   : N  N  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76100"/>
                    <exon start="75071" stop="74897"/>
                    <exon start="74301" stop="74218"/>
                    <exon start="74132" stop="73891"/>
                    <exon start="73765" stop="73546"/>
                    <exon start="72660" stop="72581"/>
                    <exon start="72498" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69750"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWRMESAKRWFCKLGKKDKPKPPKKQETTSNGKEGSKLSPHEEAPSTATKQKVAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEFMRIQRHKMGADDFEPLTMIGKGAFGEVRICREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDFTAANKLSGALLSDGRPAPPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGCECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMGTYSVLAVDYNHSIYLVCLFQFVFVLKCLFLFFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77692" stop="77432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQSTKWSSPLPHNSSSSTNTTSFSLFCFPSFSSLGFSFLFFLFFQPFTIQLCFTNNPTYLISLGKPNIYLLSILGFVDLAQSKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="72267" e_stop="71597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="72267" e_stop="71597" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72267" stop="71597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATG</gDNA_template>
            <first_frame> L  E  T  S  D  I  L  V  F  Q  L  V  S  V  L  V  W  G  T  K  R  L  T  C  F  *  L  L  D  *  R  G  Y  Y  *  *  K  F  N  S  P  P  I  N  L  N  F  L  P  R  *  H  S  K  T  A  L  W  A  M  S  K  L  L  R  D  L  E  M  *  L  F  V  *  A  Q  *  A  V  W  Y  V  K  E  T  L  V  G  Y  L  L  G  I  I  I  I  H  S  V  S  H  L  Y  G  K  D  Q  E  E  V  I  Q  F  N  I  I  I  M  H  L  S  H  A  Y  L  S  F  M  V  Q  N  L  M  L  S  F  V  H  P  E  S  E  T  P  N  I  L  G  Q  K  P  I  F  E  K  F  I  G  I  V  E  T  G  *  H  V  A  L  C  F  H  Y  I  *  M  V  Y  M  C  I  S  I  F  T  N  L  I  S  Q  Q  F  T  Q  V  N  L  E  *  M  H  S  Y  D  I  F  L  G  T  *  V  S  V  *  E  K  Q  V  L  N  G  F  A  A   </first_frame>
            <second_frame>  W  R  L  Q  I  F  W  C  F  S  *  L  V  F  W  F  G  V  Q  N  V  *  P  A  S  N  Y  *  I  D  E  D  I  T  N  R  N  S  I  V  R  Q  *  T  *  T  F  Y  L  D  N  I  Q  R  L  L  Y  G  P  C  L  S  C  *  E  T  W  K  C  N  C  L  S  E  H  S  E  Q  F  G  M  *  R  K  H  L  S  A  I  C  L  E  S  L  *  F  I  Q  C  L  T  Y  M  E  R  T  K  R  K  *  Y  S  S  T  L  S  L  C  I  *  V  M  P  I  *  V  L  W  C  R  I  S  C  S  V  L  F  I  Q  S  L  R  H  Q  I  S  L  G  R  S  L  Y  S  R  N  L  L  E  L  *  K  L  D  D  M  *  P  C  V  S  T  I  Y  R  W  S  I  C  A  F  Q  Y  L  R  T  *  Y  L  S  S  S  H  K  S  T  W  N  E  C  I  L  M  T  S  F  *  A  H  K  Y  L  Y  R  K  N  K  F  *  M  D  L  L  H  </second_frame>
            <third_frame>   G  D  F  R  Y  S  G  V  S  V  S  *  C  S  G  L  G  Y  K  T  S  D  L  L  L  I  I  R  L  T  R  I  L  L  I  E  I  Q  *  S  A  N  K  L  E  L  F  T  *  I  T  F  K  D  C  S  M  G  H  V  *  V  A  K  R  P  G  N  V  I  V  C  L  S  T  V  S  S  L  V  C  E  G  N  T  C  R  L  F  A  W  N  H  Y  N  S  F  S  V  S  L  I  W  K  G  P  R  G  S  N  T  V  Q  H  Y  H  Y  A  F  E  S  C  L  S  K  F  Y  G  A  E  S  H  A  Q  F  C  S  S  R  V  *  D  T  K  Y  P  W  A  E  A  Y  I  R  E  I  Y  W  N  C  R  N  W  M  T  C  S  L  V  F  P  L  Y  I  D  G  L  Y  V  H  F  N  I  Y  E  L  N  I  S  A  V  H  T  S  Q  P  G  M  N  A  F  L  *  H  L  S  R  H  I  S  I  C  I  G  K  T  S  F  K  W  I  C  C  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72036" stop="71776"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVWYVKETLVGYLLGIIIIHSVSHLYGKDQEEVIQFNIIIMHLSHAYLSFMVQNLMLSFVHPESETPNILGQKPIFEKFIGIVETG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72082" stop="71843"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKRPGNVIVCLSTVSSLVCEGNTCRLFAWNHYNSFSVSLIWKGPRGSNTVQHYHYAFESCLSKFYGAESHAQFCSSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68403" PGL_stop="68815"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68403" e_stop="68815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="68403" e_stop="68815" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68403" stop="68815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAACCAGCAAGAACATTCATCTATAGAGAATAGGGCTATTGAAATAAATAAACCCAAAGTTGAAAGAGATTACAAGAACAAGGTCACAAGTTTCTGCAGCTTAGTGAGTAAGCAAAATTACAAACTAGCAACAAAAAGAATGATATATGTACTTCCAAGAAACAATTTACACAAAACAAGCGCAAACTATGAACCAAGGCAGTTGCACCAGAATTTGCAAAACTGCCTTCGTCGTGAATACTTTACTTACACTTGGAATACACCTAGGTTATAAAAACACAACAACGAAAGCTATTGACTTGACGAGGGGTTGGCGCTGCCCCTGTTTACTTTGGTTTGGCTATGGTCATGAAGTTATTAACAGATTAGTTTTGGATGTAGCTATAGTTGTTCAGCCTGCTTTGAGGAT</gDNA_template>
            <first_frame> E  K  T  S  K  N  I  H  L  *  R  I  G  L  L  K  *  I  N  P  K  L  K  E  I  T  R  T  R  S  Q  V  S  A  A  *  *  V  S  K  I  T  N  *  Q  Q  K  E  *  Y  M  Y  F  Q  E  T  I  Y  T  K  Q  A  Q  T  M  N  Q  G  S  C  T  R  I  C  K  T  A  F  V  V  N  T  L  L  T  L  G  I  H  L  G  Y  K  N  T  T  T  K  A  I  D  L  T  R  G  W  R  C  P  C  L  L  W  F  G  Y  G  H  E  V  I  N  R  L  V  L  D  V  A  I  V  V  Q  P  A  L  R   </first_frame>
            <second_frame>  K  K  P  A  R  T  F  I  Y  R  E  *  G  Y  *  N  K  *  T  Q  S  *  K  R  L  Q  E  Q  G  H  K  F  L  Q  L  S  E  *  A  K  L  Q  T  S  N  K  K  N  D  I  C  T  S  K  K  Q  F  T  Q  N  K  R  K  L  *  T  K  A  V  A  P  E  F  A  K  L  P  S  S  *  I  L  Y  L  H  L  E  Y  T  *  V  I  K  T  Q  Q  R  K  L  L  T  *  R  G  V  G  A  A  P  V  Y  F  G  L  A  M  V  M  K  L  L  T  D  *  F  W  M  *  L  *  L  F  S  L  L  *  G  </second_frame>
            <third_frame>   K  N  Q  Q  E  H  S  S  I  E  N  R  A  I  E  I  N  K  P  K  V  E  R  D  Y  K  N  K  V  T  S  F  C  S  L  V  S  K  Q  N  Y  K  L  A  T  K  R  M  I  Y  V  L  P  R  N  N  L  H  K  T  S  A  N  Y  E  P  R  Q  L  H  Q  N  L  Q  N  C  L  R  R  E  Y  F  T  Y  T  W  N  T  P  R  L  *  K  H  N  N  E  S  Y  *  L  D  E  G  L  A  L  P  L  F  T  L  V  W  L  W  S  *  S  Y  *  Q  I  S  F  G  C  S  Y  S  C  S  A  C  F  E  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68405" stop="68680"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNQQEHSSIENRAIEINKPKVERDYKNKVTSFCSLVSKQNYKLATKRMIYVLPRNNLHKTSANYEPRQLHQNLQNCLRREYFTYTWNTPRL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68550" stop="68813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YMYFQETIYTKQAQTMNQGSCTRICKTAFVVNTLLTLGIHLGYKNTTTKAIDLTRGWRCPCLLWFGYGHEVINRLVLDVAIVVQPALR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="90234" PGL_stop="83449"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90234" e_stop="90100"/>
            <exon e_start="88065" e_stop="87637"/>
            <exon e_start="87451" e_stop="87287"/>
            <exon e_start="87163" e_stop="86981"/>
            <exon e_start="86849" e_stop="86255"/>
            <exon e_start="85672" e_stop="85560"/>
            <exon e_start="85428" e_stop="85208"/>
            <exon e_start="84686" e_stop="84028"/>
            <exon e_start="83455" e_stop="83449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="90234" e_stop="90100" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88065" e_stop="87637" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87451" e_stop="87287" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87163" e_stop="86981" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.927">
            <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86849" e_stop="86255" e_length="595"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85672" e_stop="85560" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85428" e_stop="85208" e_length="221"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84686" e_stop="84028" e_length="659"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="84027" i_stop="83456" i_length="572"/>
          </intron>
          <exon e_serial="9" e_score="0.429">
            <gDNA_exon_boundary e_start="83455" e_stop="83449" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90234" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90194" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90194" stop="90100"/>
              <exon start="88065" stop="87674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90189" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90166" stop="90100"/>
              <exon start="88065" stop="87656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="90100"/>
              <exon start="88065" stop="87793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90137" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87968" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87949" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87782" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87782" stop="87637"/>
              <exon start="87451" stop="87369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87781" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87769" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87738" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87738" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87715" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87159" stop="86981"/>
              <exon start="86849" stop="86502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86729" stop="86255"/>
              <exon start="85672" stop="85596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86581" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86581" stop="86255"/>
              <exon start="85672" stop="85591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86515" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86515" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86502" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86501" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86486" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86367" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86321" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85582" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85582" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85342" stop="85208"/>
              <exon start="84686" stop="84314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84495" stop="84028"/>
              <exon start="83455" stop="83449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84495" stop="84028"/>
              <exon start="83455" stop="83449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT : GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA : GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG : GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT : ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC : ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG : GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG : GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTG : TTGAACA</gDNA_template>
            <first_frame> L  F  S  I  L  F  L  S  I  I  H  L  T  I  F  L  F  F  L  T  R  P  I  I  L  D  L  *  N  L  L  I  S  P  I  S  D  L  H  L  F  C  S  N  T  :  V  I  S  P  I  E  E  I  H  L  P  S  E  S  N  F  *  N  L  L  R  S  G  S  W  S  *  L  V  H  L  S  N  D  F  *  E  L  K  G  K  G  *  R  *  S  F  F  E  D  S  K  T  T  Q  M  M  R  G  R  S  D  G  A  Q  K  K  R  L  L  T  S  V  A  V  V  A  L  F  V  V  V  L  Y  F  Y  F  G  S  K  S  N  G  E  S  A  L  E  Y  G  S  R  S  L  R  K  L  G  S  S  Y  L  G  G  D  D  D  S  D  L  S  S  K  Q  D  E  K  F  G  L  E  D  G  E  D  G  I  V  S  K  S  F  P  :  V  C  D  D  R  H  S  E  L  I  P  C  L  D  R  H  L  I  Y  Q  M  R  L  K  L  D  L  T  L  M  E  H  Y  E  R  H  C  P  L  P  E  R  R  F  N  C  L  I  P  P  P  A  G  Y  K  :  V  P  I  K  W  P  R  S  R  D  E  V  W  K  A  N  I  P  H  T  H  L  A  H  E  K  S  D  Q  N  W  M  V  V  K  G  E  K  I  I  F  P  G  G  G  T  H  F  H  Y  G  A  D  K  Y  I  A  L  I  A  N  :  M  L  K  F  P  N  N  N  L  N  N  G  G  R  I  R  T  V  F  D  V  G  C  G  V  A  S  F  G  G  Y  L  L  S  S  D  I  I  A  M  S  L  A  P  N  D  V  H  Q  N  Q  I  Q  F  A  L  E  R  G  I  P  A  Y  L  G  V  L  G  T  K  R  L  P  Y  P  S  R  S  F  E  F  A  H  C  S  R  C  R  I  D  W  L  Q  R  D  G  I  L  L  L  E  L  D  R  V  L  R  P  G  G  Y  F  A  Y  S  S  P  E  A  Y  A  Q  D  E  E  D  L  R  I  W  K  Q  M  S  T  L  V  E  R  M  C  W  R  I  A  E  K  K  N  Q  T  V  I  W  V  K  P  L  N  N  D  C  Y  M  E  R  P  A  G  T  Q  P  P  L  C  R  S  N  D  D  P  D  A  V  W  G  V  N  M  E  A  C  I  T  P  Y  S  D   : H  D  H  K  V  G  G  S  G  L  A  P  W  P  A  R  L  S  T  P  P  P  R  L  A  D  F  G  Y  S  S  E  M  F  E  K  D  M  :  E  L  W  Q  R  R  V  E  H  Y  W  N  I  L  S  S  K  I  S  S  D  T  L  R  N  I  M  D  M  K  A  N  M  G  S  F  A  A  A  L  K  D  K  D  V  W  V  M  N  V  V  P  K  D  G  P  N  T  L  K  I  V  Y  D  R  G  L  I  G  T  T  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  L  H  A  W  N  I  F  S  D  I  E  K  K  G  C  S  G  E  D  L  L  L  E  I  D  R  I  V  R  P  S  G  F  V  I  F  R  D  K  Q  H  V  I  D  F  V  K  K  Y  L  S  P  L  H  W  E  A  V  A  D  P  T  P  D  Q  D  Q  E  G  D  E  I  V  F  I  I  Q  K  K  L  W  L  T  S  E  S  I  R  D  T  E  *  M  K  F  A  T  L  K  H  H  F  I  L  I  H  F  S  P  N  F  *  D  K  L  R  T  T  H  L  K  G  Q  R  R  Y  Q  F  D  F  V  V  F  M  I  F  I  S  Y  F  S  S  F  N  L  I  S  S  C  C  F  F  *  *  Q  T  H  R  L  H  I  I  C  I  Y  R  L  Y  S  *  I  L  A  L  V  K  A  Y  F  M  H  Y  M  *  C  K  I  M  C  *  T  C  C  *  N  E  E  D  S  K  S  L  I  E  G  V   : V  E   </first_frame>
            <second_frame>  C  F  P  F  S  F  S  P  S  Y  T  *  L  F  S  C  F  S  *  H  V  L  L  F  S  I  C  K  T  Y  S  F  L  Q  F  Q  I  C  T  Y  S  A  Q  I  L :   L  F  H  Q  *  K  K  S  I  F  L  Q  N  L  I  S  E  I  C  Y  V  R  D  L  G  A  N  W  S  T  *  A  M  T  S  K  N  *  R  G  K  G  E  G  E  A  F  L  K  I  L  K  L  H  K  *  C  E  G  D  Q  M  E  R  R  R  S  A  C  *  L  L  *  L  L  L  H  S  L  L  L  S  C  I  F  I  L  A  L  R  A  T  V  S  L  L  *  S  M  E  A  D  H  *  G  N  W  D  P  R  I  W  V  E  M  M  T  L  I  L  A  A  S  K  M  R  S  L  G  W  K  M  V  K  M  A  S  F  L  R  A  S  Q :   F  A  M  I  D  I  R  S  *  F  P  V  W  T  G  I  S  Y  T  K  *  D  *  S  W  I  *  H  *  W  S  T  M  K  D  I  V  H  C  L  K  D  V  S  I  A  *  F  L  L  Q  L  D  T  R :   Y  R  L  S  G  Q  E  V  E  M  R  F  G  R  Q  T  Y  H  I  L  T  L  H  M  R  N  L  T  K  T  G  W  L  L  R  V  K  R  S  Y  F  L  V  E  A  L  T  F  T  M  E  L  I  S  T  L  L  *  L  Q  I :   C  *  N  F  R  T  I  T  *  T  M  E  E  G  Y  A  Q  F  L  T  L  V  V  V  W  L  V  L  V  V  I  F  Y  P  L  I  S  *  Q  C  R  W  R  R  M  M  C  I  R  I  R  S  N  L  P  *  R  E  E  F  L  H  I  L  V  F  L  G  Q  K  G  F  L  I  Q  A  D  H  L  N  L  L  T  V  P  V  V  G  S  I  G  F  R  G  M  A  S  F  F  S  S  L  I  G  C  L  D  L  E  A  I  L  P  I  H  L  P  K  H  M  H  R  M  K  R  I  S  E  Y  G  N  R  *  A  H  L  L  N  A  C  A  G  E  *  Q  K  K  R  T  K  Q  *  F  G  S  S  L  *  T  T  T  V  T  W  K  D  Q  L  V  L  N  H  H  F  V  G  P  M  M  I  L  M  L  F  G  V  *  T  W  K  H  A  *  H  L  I  L  I  :  M  T  T  K  L  A  E  A  G  W  L  L  G  Q  Q  G  Y  P  L  L  L  L  V  L  L  I  L  G  I  Q  V  K  C  L  R  R  T  W :   S  F  G  S  E  E  L  N  I  T  G  I  F  *  V  Q  R  F  L  Q  T  H  *  E  I  S  W  T  *  R  P  I  W  G  H  L  L  L  L  *  R  T  K  M  F  G  S  *  T  L  Y  P  K  M  D  L  T  L  S  R  L  Y  M  T  V  V  *  L  A  Q  L  M  T   : G  V  K  H  F  Q  H  I  L  G  P  M  I  C  S  M  H  G  I  Y  S  P  T  L  K  R  K  A  A  V  V  R  I  C  Y  S  R  *  I  A  *  *  G  L  V  V  L  S  S  S  A  T  N  N  M  L  L  T  L  *  R  S  I  Y  L  R  C  T  G  K  R  *  L  I  Q  R  Q  I  K  T  R  K  G  M  R  L  F  S  S  S  K  R  S  C  G  S  Q  V  K  A  S  E  I  Q  S  K  *  S  L  L  H  *  S  T  T  S  S  *  F  I  F  L  L  T  F  E  I  N  *  E  Q  H  T  S  K  V  K  G  D  I  S  L  I  L  *  Y  L  *  Y  L  F  L  T  F  H  H  L  T  *  F  P  V  V  V  S  F  S  D  K  L  I  D  Y  I  L  Y  A  F  I  G  S  I  L  K  F  W  H  *  *  K  L  T  L  C  I  T  C  N  V  K  L  C  V  K  H  V  A  E  M  K  K  I  Q  K  V  S  *  K  E  L  :  L  N  </second_frame>
            <third_frame>   V  F  H  S  L  S  L  H  H  T  L  N  Y  F  L  V  F  L  D  T  S  Y  Y  S  R  F  V  K  L  T  H  F  S  N  F  R  S  A  P  I  L  L  K  Y   : C  Y  F  T  N  R  R  N  P  S  S  F  R  I  *  F  L  K  S  V  T  F  G  I  L  E  L  T  G  P  P  K  Q  *  L  L  R  I  E  G  E  R  V  K  V  K  L  F  *  R  F  *  N  Y  T  N  D  A  R  E  I  R  W  S  A  E  E  A  L  V  D  F  C  S  C  C  C  T  L  C  C  C  P  V  F  L  F  W  L  *  E  Q  R  *  V  C  F  R  V  W  K  P  I  I  E  E  T  G  I  L  V  F  G  W  R  *  *  L  *  S  *  Q  Q  A  R  *  E  V  W  A  G  R  W  *  R  W  H  R  F  *  E  L  P   : S  L  R  *  S  T  F  G  V  N  S  L  S  G  Q  A  S  H  I  P  N  E  I  E  A  G  S  N  I  N  G  A  L  *  K  T  L  S  I  A  *  K  T  F  Q  L  L  D  S  S  S  S  W  I  Q   : G  T  D  *  V  A  K  K  *  R  *  G  L  E  G  K  H  T  T  Y  S  P  C  T  *  E  I  *  P  K  L  D  G  C  *  G  *  K  D  H  I  S  W  W  R  H  S  L  S  L  W  S  *  *  V  H  C  F  N  C  K   : Y  A  E  I  S  E  Q  *  L  E  Q  W  R  K  D  T  H  S  F  *  R  W  L  W  C  G  *  F  W  W  L  S  S  I  L  *  Y  H  S  N  V  V  G  A  E  *  C  A  S  E  S  D  P  I  C  L  R  E  R  N  S  C  I  S  W  C  S  W  D  K  K  A  S  L  S  K  Q  I  I  *  I  C  S  L  F  P  L  *  D  R  L  A  S  E  G  W  H  P  S  S  R  A  *  *  G  A  *  T  W  R  L  F  C  L  F  I  S  R  S  I  C  T  G  *  R  G  S  Q  N  M  E  T  D  E  H  T  C  *  T  H  V  L  E  N  S  R  K  K  E  P  N  S  D  L  G  Q  A  S  K  Q  R  L  L  H  G  K  T  S  W  Y  S  T  T  T  L  S  V  Q  *  *  S  *  C  C  L  G  C  E  H  G  S  M  H  N  T  L  F  *  S :   *  P  Q  S  W  R  K  R  A  G  S  L  A  S  K  A  I  H  S  S  S  S  S  C  *  F  W  V  F  K  *  N  V  *  E  G  H   : G  A  L  A  A  K  S  *  T  L  L  E  Y  F  K  F  K  D  F  F  R  H  T  E  K  Y  H  G  H  E  G  Q  Y  G  V  I  C  C  C  F  E  G  Q  R  C  L  G  H  E  R  C  T  Q  R  W  T  *  H  S  Q  D  C  I  *  P  W  F  D  W  H  N  S  *  L  :  V  *  S  I  F  N  I  S  *  D  L  *  F  A  P  C  M  E  Y  I  L  R  H  *  K  E  R  L  Q  W  *  G  S  V  T  R  D  R  S  H  S  K  A  *  W  F  C  H  L  P  R  Q  T  T  C  Y  *  L  C  K  E  V  F  I  S  V  A  L  G  S  G  S  *  S  N  A  R  S  R  P  G  R  G  *  D  C  F  H  H  P  K  E  V  V  A  H  K  *  K  H  Q  R  Y  R  V  N  E  V  C  Y  T  K  A  P  L  H  L  D  S  F  F  S  *  L  L  R  *  I  K  N  N  T  P  Q  R  S  K  E  I  S  V  *  F  C  S  I  Y  D  I  Y  F  L  L  F  I  I  *  L  N  F  Q  L  L  F  L  L  V  T  N  S  *  T  T  Y  Y  M  H  L  *  A  L  F  L  N  F  G  I  S  K  S  L  L  Y  A  L  H  V  M  *  N  Y  V  L  N  M  L  L  K  *  R  R  F  K  K  S  H  R  R  S  C :   *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87930" stop="87637"/>
                    <exon start="87451" stop="87287"/>
                    <exon start="87163" stop="86981"/>
                    <exon start="86849" stop="86255"/>
                    <exon start="85672" stop="85560"/>
                    <exon start="85428" stop="85208"/>
                    <exon start="84686" stop="84371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1884</number_coding_nucleotides>
                  <number_encoded_amino_acids>628</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFEDSKTTQMMRGRSDGAQKKRLLTSVAVVALFVVVLYFYFGSKSNGESALEYGSRSLRKLGSSYLGGDDDSDLSSKQDEKFGLEDGEDGIVSKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLTLMEHYERHCPLPERRFNCLIPPPAGYKVPIKWPRSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIALIANMLKFPNNNLNNGGRIRTVFDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWKQMSTLVERMCWRIAEKKNQTVIWVKPLNNDCYMERPAGTQPPLCRSNDDPDAVWGVNMEACITPYSDHDHKVGGSGLAPWPARLSTPPPRLADFGYSSEMFEKDMELWQRRVEHYWNILSSKISSDTLRNIMDMKANMGSFAAALKDKDVWVMNVVPKDGPNTLKIVYDRGLIGTTHDWCEAFSTYPRTYDLLHAWNIFSDIEKKGCSGEDLLLEIDRIVRPSGFVIFRDKQHVIDFVKKYLSPLHWEAVADPTPDQDQEGDEIVFIIQKKLWLTSESIRDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90234" e_stop="90100"/>
            <exon e_start="88065" e_stop="87637"/>
            <exon e_start="87451" e_stop="87287"/>
            <exon e_start="87163" e_stop="86981"/>
            <exon e_start="86849" e_stop="86255"/>
            <exon e_start="85672" e_stop="85560"/>
            <exon e_start="85428" e_stop="85208"/>
            <exon e_start="84686" e_stop="84028"/>
            <exon e_start="83740" e_stop="83727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="90234" e_stop="90100" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88065" e_stop="87637" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87451" e_stop="87287" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87163" e_stop="86981" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.927">
            <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86849" e_stop="86255" e_length="595"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85672" e_stop="85560" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85428" e_stop="85208" e_length="221"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84686" e_stop="84028" e_length="659"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84027" i_stop="83741" i_length="287"/>
          </intron>
          <exon e_serial="9" e_score="0.786">
            <gDNA_exon_boundary e_start="83740" e_stop="83727" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90234" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90194" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90194" stop="90100"/>
              <exon start="88065" stop="87674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90189" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90166" stop="90100"/>
              <exon start="88065" stop="87656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90152" stop="90100"/>
              <exon start="88065" stop="87793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90137" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87968" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87949" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87782" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87782" stop="87637"/>
              <exon start="87451" stop="87369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87781" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87769" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87738" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87738" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87715" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87159" stop="86981"/>
              <exon start="86849" stop="86502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86729" stop="86255"/>
              <exon start="85672" stop="85596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86581" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86581" stop="86255"/>
              <exon start="85672" stop="85591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86515" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86515" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86502" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86501" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86486" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86367" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86321" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85582" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85582" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85342" stop="85208"/>
              <exon start="84686" stop="84314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84443" stop="84028"/>
              <exon start="83740" stop="83727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217045" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT : GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA : GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG : GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT : ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC : ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG : GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG : GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTG : AAATTAAAAAAGAA</gDNA_template>
            <first_frame> L  F  S  I  L  F  L  S  I  I  H  L  T  I  F  L  F  F  L  T  R  P  I  I  L  D  L  *  N  L  L  I  S  P  I  S  D  L  H  L  F  C  S  N  T  :  V  I  S  P  I  E  E  I  H  L  P  S  E  S  N  F  *  N  L  L  R  S  G  S  W  S  *  L  V  H  L  S  N  D  F  *  E  L  K  G  K  G  *  R  *  S  F  F  E  D  S  K  T  T  Q  M  M  R  G  R  S  D  G  A  Q  K  K  R  L  L  T  S  V  A  V  V  A  L  F  V  V  V  L  Y  F  Y  F  G  S  K  S  N  G  E  S  A  L  E  Y  G  S  R  S  L  R  K  L  G  S  S  Y  L  G  G  D  D  D  S  D  L  S  S  K  Q  D  E  K  F  G  L  E  D  G  E  D  G  I  V  S  K  S  F  P  :  V  C  D  D  R  H  S  E  L  I  P  C  L  D  R  H  L  I  Y  Q  M  R  L  K  L  D  L  T  L  M  E  H  Y  E  R  H  C  P  L  P  E  R  R  F  N  C  L  I  P  P  P  A  G  Y  K  :  V  P  I  K  W  P  R  S  R  D  E  V  W  K  A  N  I  P  H  T  H  L  A  H  E  K  S  D  Q  N  W  M  V  V  K  G  E  K  I  I  F  P  G  G  G  T  H  F  H  Y  G  A  D  K  Y  I  A  L  I  A  N  :  M  L  K  F  P  N  N  N  L  N  N  G  G  R  I  R  T  V  F  D  V  G  C  G  V  A  S  F  G  G  Y  L  L  S  S  D  I  I  A  M  S  L  A  P  N  D  V  H  Q  N  Q  I  Q  F  A  L  E  R  G  I  P  A  Y  L  G  V  L  G  T  K  R  L  P  Y  P  S  R  S  F  E  F  A  H  C  S  R  C  R  I  D  W  L  Q  R  D  G  I  L  L  L  E  L  D  R  V  L  R  P  G  G  Y  F  A  Y  S  S  P  E  A  Y  A  Q  D  E  E  D  L  R  I  W  K  Q  M  S  T  L  V  E  R  M  C  W  R  I  A  E  K  K  N  Q  T  V  I  W  V  K  P  L  N  N  D  C  Y  M  E  R  P  A  G  T  Q  P  P  L  C  R  S  N  D  D  P  D  A  V  W  G  V  N  M  E  A  C  I  T  P  Y  S  D   : H  D  H  K  V  G  G  S  G  L  A  P  W  P  A  R  L  S  T  P  P  P  R  L  A  D  F  G  Y  S  S  E  M  F  E  K  D  M  :  E  L  W  Q  R  R  V  E  H  Y  W  N  I  L  S  S  K  I  S  S  D  T  L  R  N  I  M  D  M  K  A  N  M  G  S  F  A  A  A  L  K  D  K  D  V  W  V  M  N  V  V  P  K  D  G  P  N  T  L  K  I  V  Y  D  R  G  L  I  G  T  T  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  L  H  A  W  N  I  F  S  D  I  E  K  K  G  C  S  G  E  D  L  L  L  E  I  D  R  I  V  R  P  S  G  F  V  I  F  R  D  K  Q  H  V  I  D  F  V  K  K  Y  L  S  P  L  H  W  E  A  V  A  D  P  T  P  D  Q  D  Q  E  G  D  E  I  V  F  I  I  Q  K  K  L  W  L  T  S  E  S  I  R  D  T  E  *  M  K  F  A  T  L  K  H  H  F  I  L  I  H  F  S  P  N  F  *  D  K  L  R  T  T  H  L  K  G  Q  R  R  Y  Q  F  D  F  V  V  F  M  I  F  I  S  Y  F  S  S  F  N  L  I  S  S  C  C  F  F  *  *  Q  T  H  R  L  H  I  I  C  I  Y  R  L  Y  S  *  I  L  A  L  V  K  A  Y  F  M  H  Y  M  *  C  K  I  M  C  *  T  C  C  *  N  E  E  D  S  K  S  L  I  E  G  V   : E  I  K  K  E </first_frame>
            <second_frame>  C  F  P  F  S  F  S  P  S  Y  T  *  L  F  S  C  F  S  *  H  V  L  L  F  S  I  C  K  T  Y  S  F  L  Q  F  Q  I  C  T  Y  S  A  Q  I  L :   L  F  H  Q  *  K  K  S  I  F  L  Q  N  L  I  S  E  I  C  Y  V  R  D  L  G  A  N  W  S  T  *  A  M  T  S  K  N  *  R  G  K  G  E  G  E  A  F  L  K  I  L  K  L  H  K  *  C  E  G  D  Q  M  E  R  R  R  S  A  C  *  L  L  *  L  L  L  H  S  L  L  L  S  C  I  F  I  L  A  L  R  A  T  V  S  L  L  *  S  M  E  A  D  H  *  G  N  W  D  P  R  I  W  V  E  M  M  T  L  I  L  A  A  S  K  M  R  S  L  G  W  K  M  V  K  M  A  S  F  L  R  A  S  Q :   F  A  M  I  D  I  R  S  *  F  P  V  W  T  G  I  S  Y  T  K  *  D  *  S  W  I  *  H  *  W  S  T  M  K  D  I  V  H  C  L  K  D  V  S  I  A  *  F  L  L  Q  L  D  T  R :   Y  R  L  S  G  Q  E  V  E  M  R  F  G  R  Q  T  Y  H  I  L  T  L  H  M  R  N  L  T  K  T  G  W  L  L  R  V  K  R  S  Y  F  L  V  E  A  L  T  F  T  M  E  L  I  S  T  L  L  *  L  Q  I :   C  *  N  F  R  T  I  T  *  T  M  E  E  G  Y  A  Q  F  L  T  L  V  V  V  W  L  V  L  V  V  I  F  Y  P  L  I  S  *  Q  C  R  W  R  R  M  M  C  I  R  I  R  S  N  L  P  *  R  E  E  F  L  H  I  L  V  F  L  G  Q  K  G  F  L  I  Q  A  D  H  L  N  L  L  T  V  P  V  V  G  S  I  G  F  R  G  M  A  S  F  F  S  S  L  I  G  C  L  D  L  E  A  I  L  P  I  H  L  P  K  H  M  H  R  M  K  R  I  S  E  Y  G  N  R  *  A  H  L  L  N  A  C  A  G  E  *  Q  K  K  R  T  K  Q  *  F  G  S  S  L  *  T  T  T  V  T  W  K  D  Q  L  V  L  N  H  H  F  V  G  P  M  M  I  L  M  L  F  G  V  *  T  W  K  H  A  *  H  L  I  L  I  :  M  T  T  K  L  A  E  A  G  W  L  L  G  Q  Q  G  Y  P  L  L  L  L  V  L  L  I  L  G  I  Q  V  K  C  L  R  R  T  W :   S  F  G  S  E  E  L  N  I  T  G  I  F  *  V  Q  R  F  L  Q  T  H  *  E  I  S  W  T  *  R  P  I  W  G  H  L  L  L  L  *  R  T  K  M  F  G  S  *  T  L  Y  P  K  M  D  L  T  L  S  R  L  Y  M  T  V  V  *  L  A  Q  L  M  T   : G  V  K  H  F  Q  H  I  L  G  P  M  I  C  S  M  H  G  I  Y  S  P  T  L  K  R  K  A  A  V  V  R  I  C  Y  S  R  *  I  A  *  *  G  L  V  V  L  S  S  S  A  T  N  N  M  L  L  T  L  *  R  S  I  Y  L  R  C  T  G  K  R  *  L  I  Q  R  Q  I  K  T  R  K  G  M  R  L  F  S  S  S  K  R  S  C  G  S  Q  V  K  A  S  E  I  Q  S  K  *  S  L  L  H  *  S  T  T  S  S  *  F  I  F  L  L  T  F  E  I  N  *  E  Q  H  T  S  K  V  K  G  D  I  S  L  I  L  *  Y  L  *  Y  L  F  L  T  F  H  H  L  T  *  F  P  V  V  V  S  F  S  D  K  L  I  D  Y  I  L  Y  A  F  I  G  S  I  L  K  F  W  H  *  *  K  L  T  L  C  I  T  C  N  V  K  L  C  V  K  H  V  A  E  M  K  K  I  Q  K  V  S  *  K  E  L  :  K  L  K  K   </second_frame>
            <third_frame>   V  F  H  S  L  S  L  H  H  T  L  N  Y  F  L  V  F  L  D  T  S  Y  Y  S  R  F  V  K  L  T  H  F  S  N  F  R  S  A  P  I  L  L  K  Y   : C  Y  F  T  N  R  R  N  P  S  S  F  R  I  *  F  L  K  S  V  T  F  G  I  L  E  L  T  G  P  P  K  Q  *  L  L  R  I  E  G  E  R  V  K  V  K  L  F  *  R  F  *  N  Y  T  N  D  A  R  E  I  R  W  S  A  E  E  A  L  V  D  F  C  S  C  C  C  T  L  C  C  C  P  V  F  L  F  W  L  *  E  Q  R  *  V  C  F  R  V  W  K  P  I  I  E  E  T  G  I  L  V  F  G  W  R  *  *  L  *  S  *  Q  Q  A  R  *  E  V  W  A  G  R  W  *  R  W  H  R  F  *  E  L  P   : S  L  R  *  S  T  F  G  V  N  S  L  S  G  Q  A  S  H  I  P  N  E  I  E  A  G  S  N  I  N  G  A  L  *  K  T  L  S  I  A  *  K  T  F  Q  L  L  D  S  S  S  S  W  I  Q   : G  T  D  *  V  A  K  K  *  R  *  G  L  E  G  K  H  T  T  Y  S  P  C  T  *  E  I  *  P  K  L  D  G  C  *  G  *  K  D  H  I  S  W  W  R  H  S  L  S  L  W  S  *  *  V  H  C  F  N  C  K   : Y  A  E  I  S  E  Q  *  L  E  Q  W  R  K  D  T  H  S  F  *  R  W  L  W  C  G  *  F  W  W  L  S  S  I  L  *  Y  H  S  N  V  V  G  A  E  *  C  A  S  E  S  D  P  I  C  L  R  E  R  N  S  C  I  S  W  C  S  W  D  K  K  A  S  L  S  K  Q  I  I  *  I  C  S  L  F  P  L  *  D  R  L  A  S  E  G  W  H  P  S  S  R  A  *  *  G  A  *  T  W  R  L  F  C  L  F  I  S  R  S  I  C  T  G  *  R  G  S  Q  N  M  E  T  D  E  H  T  C  *  T  H  V  L  E  N  S  R  K  K  E  P  N  S  D  L  G  Q  A  S  K  Q  R  L  L  H  G  K  T  S  W  Y  S  T  T  T  L  S  V  Q  *  *  S  *  C  C  L  G  C  E  H  G  S  M  H  N  T  L  F  *  S :   *  P  Q  S  W  R  K  R  A  G  S  L  A  S  K  A  I  H  S  S  S  S  S  C  *  F  W  V  F  K  *  N  V  *  E  G  H   : G  A  L  A  A  K  S  *  T  L  L  E  Y  F  K  F  K  D  F  F  R  H  T  E  K  Y  H  G  H  E  G  Q  Y  G  V  I  C  C  C  F  E  G  Q  R  C  L  G  H  E  R  C  T  Q  R  W  T  *  H  S  Q  D  C  I  *  P  W  F  D  W  H  N  S  *  L  :  V  *  S  I  F  N  I  S  *  D  L  *  F  A  P  C  M  E  Y  I  L  R  H  *  K  E  R  L  Q  W  *  G  S  V  T  R  D  R  S  H  S  K  A  *  W  F  C  H  L  P  R  Q  T  T  C  Y  *  L  C  K  E  V  F  I  S  V  A  L  G  S  G  S  *  S  N  A  R  S  R  P  G  R  G  *  D  C  F  H  H  P  K  E  V  V  A  H  K  *  K  H  Q  R  Y  R  V  N  E  V  C  Y  T  K  A  P  L  H  L  D  S  F  F  S  *  L  L  R  *  I  K  N  N  T  P  Q  R  S  K  E  I  S  V  *  F  C  S  I  Y  D  I  Y  F  L  L  F  I  I  *  L  N  F  Q  L  L  F  L  L  V  T  N  S  *  T  T  Y  Y  M  H  L  *  A  L  F  L  N  F  G  I  S  K  S  L  L  Y  A  L  H  V  M  *  N  Y  V  L  N  M  L  L  K  *  R  R  F  K  K  S  H  R  R  S  * :   N  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87930" stop="87637"/>
                    <exon start="87451" stop="87287"/>
                    <exon start="87163" stop="86981"/>
                    <exon start="86849" stop="86255"/>
                    <exon start="85672" stop="85560"/>
                    <exon start="85428" stop="85208"/>
                    <exon start="84686" stop="84371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1884</number_coding_nucleotides>
                  <number_encoded_amino_acids>628</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFEDSKTTQMMRGRSDGAQKKRLLTSVAVVALFVVVLYFYFGSKSNGESALEYGSRSLRKLGSSYLGGDDDSDLSSKQDEKFGLEDGEDGIVSKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLTLMEHYERHCPLPERRFNCLIPPPAGYKVPIKWPRSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIALIANMLKFPNNNLNNGGRIRTVFDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWKQMSTLVERMCWRIAEKKNQTVIWVKPLNNDCYMERPAGTQPPLCRSNDDPDAVWGVNMEACITPYSDHDHKVGGSGLAPWPARLSTPPPRLADFGYSSEMFEKDMELWQRRVEHYWNILSSKISSDTLRNIMDMKANMGSFAAALKDKDVWVMNVVPKDGPNTLKIVYDRGLIGTTHDWCEAFSTYPRTYDLLHAWNIFSDIEKKGCSGEDLLLEIDRIVRPSGFVIFRDKQHVIDFVKKYLSPLHWEAVADPTPDQDQEGDEIVFIIQKKLWLTSESIRDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90158" e_stop="90108"/>
            <exon e_start="88065" e_stop="87637"/>
            <exon e_start="87451" e_stop="87287"/>
            <exon e_start="87163" e_stop="86981"/>
            <exon e_start="86849" e_stop="86255"/>
            <exon e_start="85672" e_stop="85560"/>
            <exon e_start="85428" e_stop="85208"/>
            <exon e_start="84686" e_stop="84028"/>
            <exon e_start="83455" e_stop="83449"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="0.941"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.915" e_score="1.000"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="90158" e_stop="90108" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90107" i_stop="88066" i_length="2042"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="88065" e_stop="87637" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87451" e_stop="87287" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87163" e_stop="86981" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.927">
            <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86849" e_stop="86255" e_length="595"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85672" e_stop="85560" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85428" e_stop="85208" e_length="221"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="84686" e_stop="84028" e_length="659"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.915">
            <gDNA_intron_boundary i_start="84027" i_stop="83456" i_length="572"/>
          </intron>
          <exon e_serial="9" e_score="0.429">
            <gDNA_exon_boundary e_start="83455" e_stop="83449" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90158" stop="90108"/>
              <exon start="88065" stop="87670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87968" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="87082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87949" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87782" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87782" stop="87637"/>
              <exon start="87451" stop="87369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87781" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87769" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87738" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87738" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87715" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87159" stop="86981"/>
              <exon start="86849" stop="86502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86729" stop="86255"/>
              <exon start="85672" stop="85596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86581" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86581" stop="86255"/>
              <exon start="85672" stop="85591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86515" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86515" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86502" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86501" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86486" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86394" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86367" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86321" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85624" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85582" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85582" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85342" stop="85208"/>
              <exon start="84686" stop="84314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84534" stop="84114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430114" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84495" stop="84028"/>
              <exon start="83455" stop="83449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84495" stop="84028"/>
              <exon start="83455" stop="83449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCT : GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA : GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG : GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT : ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC : ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG : GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG : GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTG : TTGAACA</gDNA_template>
            <first_frame> I  C  K  T  Y  S  F  L  Q  F  Q  I  C  T  Y  S  A  :  V  I  S  P  I  E  E  I  H  L  P  S  E  S  N  F  *  N  L  L  R  S  G  S  W  S  *  L  V  H  L  S  N  D  F  *  E  L  K  G  K  G  *  R  *  S  F  F  E  D  S  K  T  T  Q  M  M  R  G  R  S  D  G  A  Q  K  K  R  L  L  T  S  V  A  V  V  A  L  F  V  V  V  L  Y  F  Y  F  G  S  K  S  N  G  E  S  A  L  E  Y  G  S  R  S  L  R  K  L  G  S  S  Y  L  G  G  D  D  D  S  D  L  S  S  K  Q  D  E  K  F  G  L  E  D  G  E  D  G  I  V  S  K  S  F  P  :  V  C  D  D  R  H  S  E  L  I  P  C  L  D  R  H  L  I  Y  Q  M  R  L  K  L  D  L  T  L  M  E  H  Y  E  R  H  C  P  L  P  E  R  R  F  N  C  L  I  P  P  P  A  G  Y  K  :  V  P  I  K  W  P  R  S  R  D  E  V  W  K  A  N  I  P  H  T  H  L  A  H  E  K  S  D  Q  N  W  M  V  V  K  G  E  K  I  I  F  P  G  G  G  T  H  F  H  Y  G  A  D  K  Y  I  A  L  I  A  N  :  M  L  K  F  P  N  N  N  L  N  N  G  G  R  I  R  T  V  F  D  V  G  C  G  V  A  S  F  G  G  Y  L  L  S  S  D  I  I  A  M  S  L  A  P  N  D  V  H  Q  N  Q  I  Q  F  A  L  E  R  G  I  P  A  Y  L  G  V  L  G  T  K  R  L  P  Y  P  S  R  S  F  E  F  A  H  C  S  R  C  R  I  D  W  L  Q  R  D  G  I  L  L  L  E  L  D  R  V  L  R  P  G  G  Y  F  A  Y  S  S  P  E  A  Y  A  Q  D  E  E  D  L  R  I  W  K  Q  M  S  T  L  V  E  R  M  C  W  R  I  A  E  K  K  N  Q  T  V  I  W  V  K  P  L  N  N  D  C  Y  M  E  R  P  A  G  T  Q  P  P  L  C  R  S  N  D  D  P  D  A  V  W  G  V  N  M  E  A  C  I  T  P  Y  S  D   : H  D  H  K  V  G  G  S  G  L  A  P  W  P  A  R  L  S  T  P  P  P  R  L  A  D  F  G  Y  S  S  E  M  F  E  K  D  M  :  E  L  W  Q  R  R  V  E  H  Y  W  N  I  L  S  S  K  I  S  S  D  T  L  R  N  I  M  D  M  K  A  N  M  G  S  F  A  A  A  L  K  D  K  D  V  W  V  M  N  V  V  P  K  D  G  P  N  T  L  K  I  V  Y  D  R  G  L  I  G  T  T  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  L  H  A  W  N  I  F  S  D  I  E  K  K  G  C  S  G  E  D  L  L  L  E  I  D  R  I  V  R  P  S  G  F  V  I  F  R  D  K  Q  H  V  I  D  F  V  K  K  Y  L  S  P  L  H  W  E  A  V  A  D  P  T  P  D  Q  D  Q  E  G  D  E  I  V  F  I  I  Q  K  K  L  W  L  T  S  E  S  I  R  D  T  E  *  M  K  F  A  T  L  K  H  H  F  I  L  I  H  F  S  P  N  F  *  D  K  L  R  T  T  H  L  K  G  Q  R  R  Y  Q  F  D  F  V  V  F  M  I  F  I  S  Y  F  S  S  F  N  L  I  S  S  C  C  F  F  *  *  Q  T  H  R  L  H  I  I  C  I  Y  R  L  Y  S  *  I  L  A  L  V  K  A  Y  F  M  H  Y  M  *  C  K  I  M  C  *  T  C  C  *  N  E  E  D  S  K  S  L  I  E  G  V   : V  E   </first_frame>
            <second_frame>  F  V  K  L  T  H  F  S  N  F  R  S  A  P  I  L  L :   L  F  H  Q  *  K  K  S  I  F  L  Q  N  L  I  S  E  I  C  Y  V  R  D  L  G  A  N  W  S  T  *  A  M  T  S  K  N  *  R  G  K  G  E  G  E  A  F  L  K  I  L  K  L  H  K  *  C  E  G  D  Q  M  E  R  R  R  S  A  C  *  L  L  *  L  L  L  H  S  L  L  L  S  C  I  F  I  L  A  L  R  A  T  V  S  L  L  *  S  M  E  A  D  H  *  G  N  W  D  P  R  I  W  V  E  M  M  T  L  I  L  A  A  S  K  M  R  S  L  G  W  K  M  V  K  M  A  S  F  L  R  A  S  Q :   F  A  M  I  D  I  R  S  *  F  P  V  W  T  G  I  S  Y  T  K  *  D  *  S  W  I  *  H  *  W  S  T  M  K  D  I  V  H  C  L  K  D  V  S  I  A  *  F  L  L  Q  L  D  T  R :   Y  R  L  S  G  Q  E  V  E  M  R  F  G  R  Q  T  Y  H  I  L  T  L  H  M  R  N  L  T  K  T  G  W  L  L  R  V  K  R  S  Y  F  L  V  E  A  L  T  F  T  M  E  L  I  S  T  L  L  *  L  Q  I :   C  *  N  F  R  T  I  T  *  T  M  E  E  G  Y  A  Q  F  L  T  L  V  V  V  W  L  V  L  V  V  I  F  Y  P  L  I  S  *  Q  C  R  W  R  R  M  M  C  I  R  I  R  S  N  L  P  *  R  E  E  F  L  H  I  L  V  F  L  G  Q  K  G  F  L  I  Q  A  D  H  L  N  L  L  T  V  P  V  V  G  S  I  G  F  R  G  M  A  S  F  F  S  S  L  I  G  C  L  D  L  E  A  I  L  P  I  H  L  P  K  H  M  H  R  M  K  R  I  S  E  Y  G  N  R  *  A  H  L  L  N  A  C  A  G  E  *  Q  K  K  R  T  K  Q  *  F  G  S  S  L  *  T  T  T  V  T  W  K  D  Q  L  V  L  N  H  H  F  V  G  P  M  M  I  L  M  L  F  G  V  *  T  W  K  H  A  *  H  L  I  L  I  :  M  T  T  K  L  A  E  A  G  W  L  L  G  Q  Q  G  Y  P  L  L  L  L  V  L  L  I  L  G  I  Q  V  K  C  L  R  R  T  W :   S  F  G  S  E  E  L  N  I  T  G  I  F  *  V  Q  R  F  L  Q  T  H  *  E  I  S  W  T  *  R  P  I  W  G  H  L  L  L  L  *  R  T  K  M  F  G  S  *  T  L  Y  P  K  M  D  L  T  L  S  R  L  Y  M  T  V  V  *  L  A  Q  L  M  T   : G  V  K  H  F  Q  H  I  L  G  P  M  I  C  S  M  H  G  I  Y  S  P  T  L  K  R  K  A  A  V  V  R  I  C  Y  S  R  *  I  A  *  *  G  L  V  V  L  S  S  S  A  T  N  N  M  L  L  T  L  *  R  S  I  Y  L  R  C  T  G  K  R  *  L  I  Q  R  Q  I  K  T  R  K  G  M  R  L  F  S  S  S  K  R  S  C  G  S  Q  V  K  A  S  E  I  Q  S  K  *  S  L  L  H  *  S  T  T  S  S  *  F  I  F  L  L  T  F  E  I  N  *  E  Q  H  T  S  K  V  K  G  D  I  S  L  I  L  *  Y  L  *  Y  L  F  L  T  F  H  H  L  T  *  F  P  V  V  V  S  F  S  D  K  L  I  D  Y  I  L  Y  A  F  I  G  S  I  L  K  F  W  H  *  *  K  L  T  L  C  I  T  C  N  V  K  L  C  V  K  H  V  A  E  M  K  K  I  Q  K  V  S  *  K  E  L  :  L  N  </second_frame>
            <third_frame>   L  *  N  L  L  I  S  P  I  S  D  L  H  L  F  C   : C  Y  F  T  N  R  R  N  P  S  S  F  R  I  *  F  L  K  S  V  T  F  G  I  L  E  L  T  G  P  P  K  Q  *  L  L  R  I  E  G  E  R  V  K  V  K  L  F  *  R  F  *  N  Y  T  N  D  A  R  E  I  R  W  S  A  E  E  A  L  V  D  F  C  S  C  C  C  T  L  C  C  C  P  V  F  L  F  W  L  *  E  Q  R  *  V  C  F  R  V  W  K  P  I  I  E  E  T  G  I  L  V  F  G  W  R  *  *  L  *  S  *  Q  Q  A  R  *  E  V  W  A  G  R  W  *  R  W  H  R  F  *  E  L  P   : S  L  R  *  S  T  F  G  V  N  S  L  S  G  Q  A  S  H  I  P  N  E  I  E  A  G  S  N  I  N  G  A  L  *  K  T  L  S  I  A  *  K  T  F  Q  L  L  D  S  S  S  S  W  I  Q   : G  T  D  *  V  A  K  K  *  R  *  G  L  E  G  K  H  T  T  Y  S  P  C  T  *  E  I  *  P  K  L  D  G  C  *  G  *  K  D  H  I  S  W  W  R  H  S  L  S  L  W  S  *  *  V  H  C  F  N  C  K   : Y  A  E  I  S  E  Q  *  L  E  Q  W  R  K  D  T  H  S  F  *  R  W  L  W  C  G  *  F  W  W  L  S  S  I  L  *  Y  H  S  N  V  V  G  A  E  *  C  A  S  E  S  D  P  I  C  L  R  E  R  N  S  C  I  S  W  C  S  W  D  K  K  A  S  L  S  K  Q  I  I  *  I  C  S  L  F  P  L  *  D  R  L  A  S  E  G  W  H  P  S  S  R  A  *  *  G  A  *  T  W  R  L  F  C  L  F  I  S  R  S  I  C  T  G  *  R  G  S  Q  N  M  E  T  D  E  H  T  C  *  T  H  V  L  E  N  S  R  K  K  E  P  N  S  D  L  G  Q  A  S  K  Q  R  L  L  H  G  K  T  S  W  Y  S  T  T  T  L  S  V  Q  *  *  S  *  C  C  L  G  C  E  H  G  S  M  H  N  T  L  F  *  S :   *  P  Q  S  W  R  K  R  A  G  S  L  A  S  K  A  I  H  S  S  S  S  S  C  *  F  W  V  F  K  *  N  V  *  E  G  H   : G  A  L  A  A  K  S  *  T  L  L  E  Y  F  K  F  K  D  F  F  R  H  T  E  K  Y  H  G  H  E  G  Q  Y  G  V  I  C  C  C  F  E  G  Q  R  C  L  G  H  E  R  C  T  Q  R  W  T  *  H  S  Q  D  C  I  *  P  W  F  D  W  H  N  S  *  L  :  V  *  S  I  F  N  I  S  *  D  L  *  F  A  P  C  M  E  Y  I  L  R  H  *  K  E  R  L  Q  W  *  G  S  V  T  R  D  R  S  H  S  K  A  *  W  F  C  H  L  P  R  Q  T  T  C  Y  *  L  C  K  E  V  F  I  S  V  A  L  G  S  G  S  *  S  N  A  R  S  R  P  G  R  G  *  D  C  F  H  H  P  K  E  V  V  A  H  K  *  K  H  Q  R  Y  R  V  N  E  V  C  Y  T  K  A  P  L  H  L  D  S  F  F  S  *  L  L  R  *  I  K  N  N  T  P  Q  R  S  K  E  I  S  V  *  F  C  S  I  Y  D  I  Y  F  L  L  F  I  I  *  L  N  F  Q  L  L  F  L  L  V  T  N  S  *  T  T  Y  Y  M  H  L  *  A  L  F  L  N  F  G  I  S  K  S  L  L  Y  A  L  H  V  M  *  N  Y  V  L  N  M  L  L  K  *  R  R  F  K  K  S  H  R  R  S  C :   *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87930" stop="87637"/>
                    <exon start="87451" stop="87287"/>
                    <exon start="87163" stop="86981"/>
                    <exon start="86849" stop="86255"/>
                    <exon start="85672" stop="85560"/>
                    <exon start="85428" stop="85208"/>
                    <exon start="84686" stop="84371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1884</number_coding_nucleotides>
                  <number_encoded_amino_acids>628</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFEDSKTTQMMRGRSDGAQKKRLLTSVAVVALFVVVLYFYFGSKSNGESALEYGSRSLRKLGSSYLGGDDDSDLSSKQDEKFGLEDGEDGIVSKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLTLMEHYERHCPLPERRFNCLIPPPAGYKVPIKWPRSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIALIANMLKFPNNNLNNGGRIRTVFDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWKQMSTLVERMCWRIAEKKNQTVIWVKPLNNDCYMERPAGTQPPLCRSNDDPDAVWGVNMEACITPYSDHDHKVGGSGLAPWPARLSTPPPRLADFGYSSEMFEKDMELWQRRVEHYWNILSSKISSDTLRNIMDMKANMGSFAAALKDKDVWVMNVVPKDGPNTLKIVYDRGLIGTTHDWCEAFSTYPRTYDLLHAWNIFSDIEKKGCSGEDLLLEIDRIVRPSGFVIFRDKQHVIDFVKKYLSPLHWEAVADPTPDQDQEGDEIVFIIQKKLWLTSESIRDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="84069" PGL_stop="84696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84069" e_stop="84696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="84069" e_stop="84696" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84069" stop="84579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84111" stop="84512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84129" stop="84696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACATGTTTAACACATAATTTTACATTACATGTAATGCATAAAGTAAGCTTTTACTAATGCCAAAATTTAAGAATAGAGCCTATAAATGCATATAATATGTAGTCTATGAGTTTGTCACTAAAAGAAACAACAACTGGAAATTAAGTTAAATGATGAAAAGTAAGAAATAAATATCATAAATACTACAAAATCAAACTGATATCTCCTTTGACCTTTGAGGTGTGTTGTTCTTAATTTATCTCAAAAGTTAGGAGAAAAATGAATCAAGATGAAGTGGTGCTTTAGTGTAGCAAACTTCATTTACTCTGTATCTCTGATGCTTTCACTTGTGAGCCACAACTTCTTTTGGATGATGAAAACAATCTCATCCCCTTCCTGGTCTTGATCTGGCGTTGGATCAGCTACCGCTTCCCAGTGCAACGGAGATAAATACTTCTTTACAAAGTCAATAACATGTTGTTTGTCGCGGAAGATGACAAAACCACTAGGCCTTACTATGCGATCTATCTCGAGTAACAGATCCTCACCACTGCAGCCTTTCTTTTCAATGTCGGAGAATATATTCCATGCATGGAGCAAATCATAGGTCCTAGGATATGTTGAAAATGCTTCACACCTGCACTCAA</gDNA_template>
            <first_frame> Q  H  V  *  H  I  I  L  H  Y  M  *  C  I  K  *  A  F  T  N  A  K  I  *  E  *  S  L  *  M  H  I  I  C  S  L  *  V  C  H  *  K  K  Q  Q  L  E  I  K  L  N  D  E  K  *  E  I  N  I  I  N  T  T  K  S  N  *  Y  L  L  *  P  L  R  C  V  V  L  N  L  S  Q  K  L  G  E  K  *  I  K  M  K  W  C  F  S  V  A  N  F  I  Y  S  V  S  L  M  L  S  L  V  S  H  N  F  F  W  M  M  K  T  I  S  S  P  S  W  S  *  S  G  V  G  S  A  T  A  S  Q  C  N  G  D  K  Y  F  F  T  K  S  I  T  C  C  L  S  R  K  M  T  K  P  L  G  L  T  M  R  S  I  S  S  N  R  S  S  P  L  Q  P  F  F  S  M  S  E  N  I  F  H  A  W  S  K  S  *  V  L  G  Y  V  E  N  A  S  H  L  H  S  </first_frame>
            <second_frame>  N  M  F  N  T  *  F  Y  I  T  C  N  A  *  S  K  L  L  L  M  P  K  F  K  N  R  A  Y  K  C  I  *  Y  V  V  Y  E  F  V  T  K  R  N  N  N  W  K  L  S  *  M  M  K  S  K  K  *  I  S  *  I  L  Q  N  Q  T  D  I  S  F  D  L  *  G  V  L  F  L  I  Y  L  K  S  *  E  K  N  E  S  R  *  S  G  A  L  V  *  Q  T  S  F  T  L  Y  L  *  C  F  H  L  *  A  T  T  S  F  G  *  *  K  Q  S  H  P  L  P  G  L  D  L  A  L  D  Q  L  P  L  P  S  A  T  E  I  N  T  S  L  Q  S  Q  *  H  V  V  C  R  G  R  *  Q  N  H  *  A  L  L  C  D  L  S  R  V  T  D  P  H  H  C  S  L  S  F  Q  C  R  R  I  Y  S  M  H  G  A  N  H  R  S  *  D  M  L  K  M  L  H  T  C  T  Q </second_frame>
            <third_frame>   T  C  L  T  H  N  F  T  L  H  V  M  H  K  V  S  F  Y  *  C  Q  N  L  R  I  E  P  I  N  A  Y  N  M  *  S  M  S  L  S  L  K  E  T  T  T  G  N  *  V  K  *  *  K  V  R  N  K  Y  H  K  Y  Y  K  I  K  L  I  S  P  L  T  F  E  V  C  C  S  *  F  I  S  K  V  R  R  K  M  N  Q  D  E  V  V  L  *  C  S  K  L  H  L  L  C  I  S  D  A  F  T  C  E  P  Q  L  L  L  D  D  E  N  N  L  I  P  F  L  V  L  I  W  R  W  I  S  Y  R  F  P  V  Q  R  R  *  I  L  L  Y  K  V  N  N  M  L  F  V  A  E  D  D  K  T  T  R  P  Y  Y  A  I  Y  L  E  *  Q  I  L  T  T  A  A  F  L  F  N  V  G  E  Y  I  P  C  M  E  Q  I  I  G  P  R  I  C  *  K  C  F  T  P  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84456" stop="84656"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVGSATASQCNGDKYFFTKSITCCLSRKMTKPLGLTMRSISSNRSSPLQPFFSMSENIFHAWSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="87667" PGL_stop="88059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87667" e_stop="88059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="87667" e_stop="88059" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87667" stop="88059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCATCTTCCAGCCCAAACTTCTCATCTTGCTTGCTGCTAAGATCAGAGTCATCATCTCCACCCAAATACGAGGATCCCAGTTTCCTCAATGATCGGCTTCCATACTCTAAAGCAGACTCACCGTTGCTCTTAGAGCCAAAATAAAAATACAGGACAACAACAAAGAGTGCAACAACAGCTACAGAAGTCAACAAGCGCTTCTTCTGCGCTCCATCTGATCTCCCTCGCATCATTTGTGTAGTTTTAGAATCTTCAAAAAAGCTTCACCTTCACCCTTTCCCCTTCAATTCTTAGAAGTCATTGCTTAGGTGGACCAGTTAGCTCCAAGATCCCGAACGTAACAGATTTCAGAAATTAGATTCTGAAGGAAGATGGATTTCTTCTATTGGTGA</gDNA_template>
            <first_frame> T  I  F  Q  P  K  L  L  I  L  L  A  A  K  I  R  V  I  I  S  T  Q  I  R  G  S  Q  F  P  Q  *  S  A  S  I  L  *  S  R  L  T  V  A  L  R  A  K  I  K  I  Q  D  N  N  K  E  C  N  N  S  Y  R  S  Q  Q  A  L  L  L  R  S  I  *  S  P  S  H  H  L  C  S  F  R  I  F  K  K  A  S  P  S  P  F  P  L  Q  F  L  E  V  I  A  *  V  D  Q  L  A  P  R  S  R  T  *  Q  I  S  E  I  R  F  *  R  K  M  D  F  F  Y  W  * </first_frame>
            <second_frame>  P  S  S  S  P  N  F  S  S  C  L  L  L  R  S  E  S  S  S  P  P  K  Y  E  D  P  S  F  L  N  D  R  L  P  Y  S  K  A  D  S  P  L  L  L  E  P  K  *  K  Y  R  T  T  T  K  S  A  T  T  A  T  E  V  N  K  R  F  F  C  A  P  S  D  L  P  R  I  I  C  V  V  L  E  S  S  K  K  L  H  L  H  P  F  P  F  N  S  *  K  S  L  L  R  W  T  S  *  L  Q  D  P  E  R  N  R  F  Q  K  L  D  S  E  G  R  W  I  S  S  I  G   </second_frame>
            <third_frame>   H  L  P  A  Q  T  S  H  L  A  C  C  *  D  Q  S  H  H  L  H  P  N  T  R  I  P  V  S  S  M  I  G  F  H  T  L  K  Q  T  H  R  C  S  *  S  Q  N  K  N  T  G  Q  Q  Q  R  V  Q  Q  Q  L  Q  K  S  T  S  A  S  S  A  L  H  L  I  S  L  A  S  F  V  *  F  *  N  L  Q  K  S  F  T  F  T  L  S  P  S  I  L  R  S  H  C  L  G  G  P  V  S  S  K  I  P  N  V  T  D  F  R  N  *  I  L  K  E  D  G  F  L  L  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0007I05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="97955" PGL_stop="96980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97955" e_stop="97449"/>
            <exon e_start="97273" e_stop="96980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.935"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="97955" e_stop="97449" e_length="507"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97448" i_stop="97274" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="97273" e_stop="96980" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97955" stop="97449"/>
              <exon start="97273" stop="97062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97217" stop="96980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAAAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGATCTGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAAGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACAC : GTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTAAGGGGATCGGAGTGTCACGTACCGACACAAGAGAACTAATGAATATGAGGGAGCGGAGTGTCACATACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  T  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  I  L  I  S  L  L  M  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  E  I  C  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  :  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  L  R  G  S  E  C  H  V  P  T  Q  E  N  *  *  I  *  G  S  G  V  S  H  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  L  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  K  R  R  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  R  S  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  K  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T :   *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  D  *  G  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  I  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  Y  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  K  G  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  L  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  L  R  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T   : R  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  K  G  I  G  V  S  R  T  D  T  R  E  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0007I05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="99321" PGL_stop="99497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99321" e_stop="99497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="99321" e_stop="99497" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99321" stop="99497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0007I05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="100802" PGL_stop="102766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100802" e_stop="102766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="100802" e_stop="102766" e_length="1965"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100802" stop="101513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100802" stop="101396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100802" stop="101326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100873" stop="101551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100873" stop="101231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101373" stop="102073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101977" stop="102695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101980" stop="102642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102334" stop="102766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAACTCCTTATTTCTGACACATAAGTAGGTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTAGTGGCATACCAAGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACGATTCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCCGAAATCCGTAGTTCTAACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTAGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAAGTCTGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAATTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  I  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  H  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  N  T  L  *  L  I  E  Q  V  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  S  G  I  P  R  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  *  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  R  F  K  I  T  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  S  S  N  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  I  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  H  S  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  V  *  V  F  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  *  V  G  L  T  Q  L  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  F  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  V  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  T  L  C  N  *  S  N  K  Y  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  S  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  P  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  D  S  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  E  R  I  L  P  *  P  L  P  V  R  P  K  S  V  V  L  T  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  K  V  G  *  H  T  L  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L  A  L  G  S  R  T  H  L  F  S  Y  P  S  S  L  G  D  I  L  L  H  K  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  F  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  S  R  C  L  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  N  S  L  F  L  T  H  K  *  V  L  P  N  Y  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  T  S  V  C  H  Q  *  I  R  S  Q  R  D  S  N  M  A  *  K  S  R  S  S  N  S  *  K  Q  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  F  V  T  N  R  T  S  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  P  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  *  W  H  T  K  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  M  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  H  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  L  K  G  F  C  R  S  R  Y  L  *  G  R  N  P  *  F  *  P  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  K  L  G  S  I  P  *  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  L  *  A  Q  E  L  I  S  F  P  I  P  Q  V  W  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100967" stop="101305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVHQYVINKYDHKEIQIWLKNPVHQTHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTNTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102489" stop="102764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQFLILHLFILPILPFSYYFLSRWRSHCPSIRWSRCLSSSSRGRPPTTSTTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101906" stop="102136"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDFAVAATCKAEIRSSNLNPFTKRRIRSCGLKQSWVAYLDNARNLASYAVTDILPCSRLKNSSLFLSLKSGGYTSP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101284" stop="101496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRHKHFVTNRTSINARKRILVLYGYLVQLPVVYAHPKTPILLLHKQNRSTPRRCTWSNEAFAQQLLKLGF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101528" stop="101737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSSGIPRRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="102699" PGL_stop="102146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102699" e_stop="102146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="102699" e_stop="102146" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102699" stop="102146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGACCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAATTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  T  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  I  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  R  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  D  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  N  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102698" stop="102147"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRPSDTRAVTPPPTEEVIREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="103058" PGL_stop="102773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103058" e_stop="102773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="103058" e_stop="102773" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103058" stop="102773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTTTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  S  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  R  M  V  R  T  R  A  T  T  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  F  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   K  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103009" stop="102773"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLFFVLLLGSNWYLGDTNWYLTIFTLFRGWLELEQRLRQHQHRQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="103844" PGL_stop="103366"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103844" e_stop="103366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="103844" e_stop="103366" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103844" stop="103607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103843" stop="103366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGATACATAGATTAAGGGGATCAGAGTGTCACGTACCGACACAAGAGAACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTCCTTTGTTATTTGTGGAGTGTAGCAAACGTGCCATCGTCTTCAACTCAACCGCAACTCTTGCCAGTCTTCATTATTCCGGATATCTGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  K  G  I  R  V  S  R  T  D  T  R  E  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  C  Y  L  W  S  V  A  N  V  P  S  S  S  T  Q  P  Q  L  L  P  V  F  I  I  P  D  I  W  V  S  *  C  F  *  L  G   </first_frame>
            <second_frame>  H  E  P  I  H  R  L  R  G  S  E  C  H  V  P  T  Q  E  N  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  S  F  V  I  C  G  V  *  Q  T  C  H  R  L  Q  L  N  R  N  S  C  Q  S  S  L  F  R  I  S  G  *  A  N  A  S  S  L  D  </second_frame>
            <third_frame>   T  N  R  Y  I  D  *  G  D  Q  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  P  L  L  F  V  E  C  S  K  R  A  I  V  F  N  S  T  A  T  L  A  S  L  H  Y  S  G  Y  L  G  E  L  M  L  L  A  W  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0007I05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="104583" PGL_stop="104180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104583" e_stop="104180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="104583" e_stop="104180" e_length="404"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104583" stop="104180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAATCCTAATCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAAGCGTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGTCACAAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  T  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  I  L  I  S  L  L  M  M  R  P  W  Y  K  R  K  R  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T   </first_frame>
            <second_frame>  S  L  R  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  L  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  S  V  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  V  S  Q  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  </second_frame>
            <third_frame>   V  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  Y  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G  C  H  K  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0007I05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 282 chains have been computed
$ 
$ memory statistics:
$ 1003840 bytes spliced alignments in total
$ 150 spliced alignments have been stored
$ 6692 bytes was the average size of a spliced alignment
$ 37808 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1718 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 351 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 08:37:12
-->
