<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-19 08:37:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319404" ref_strand="+" ref_description="SGN-U319404        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | plastid-lipid associated protein PAP / fibrillin family protein, contains Pfam profile PF04755: PAP_fibrillin | chr3:8376454-8378307 REVERSE | Aliases: MLM24.13(evalue: 4e-89, score=325) genbank/nr: gi|38679319|gb|AAR26481.1| harpin binding protein 1 [Lycopersicon esculentum] (evalue: 5e-142, score=507)">
      <seq>tatataatagtattttatttcatttagagattcaaattcgaatatctttgttatagaggttttataatttttaatatgaaatttttaaatttaatcgttttaaatatgaatacgagacaccgaataaaagaaaagggaaagaaggaaatgggtcccttagcttttttattcaacacaaaactagaaaaatgtagatttgttactacaactacaccaccaatcaaactccacaaaagatcgatccttttttctgaaattcaagctcaaccatggcttctctacttcattcgagacttcccctttctcacaatcattctttatcaaattcttgccaatctttcccatgtcatctcccaggaagaagcaagagaagtactcaaagattattagaggaaaggagctatgacagcaagagaagtttagtttgccagtcgggtattgatgaagtcacttttattgagccacctggtagtaaagaagctgaagcggagcttattgggtctctcaaactcaagttattgagtgctgtttctgggctaaacagaggtcttgctgcaagtgaagatgatctaaagaaggcggatgaggctgccaaggagctagaatcttgtgcaggagctgtagatctcgcagctgatcttgataaacttcaagggaggtggaaattgatatacagcagtgcattctcatctcgtactcttggtggaagtcgtcctggaccccccactggaagacttcttcccatcactcttggtcaggtatttcaaagaatcgatgtactgagcaaagattttgacaacatagtggagcttgaattaggtgctccgtggcctttcccgcctgttgaagcaactgccactttagcccacaaatttgaacttataggatcatctacgattaagattatattcgagaaaactacagtgaagacaactggaaatttatcacagctcccaccattagaagtgcctcgcataccagatcagttcaggccaccatcaaatacaggaagtggtgagtttgaagttacctacatcgattctgatacacgagtaacaaggggagacagaggagagcttagagttttcgttatctcataagttaagctgaaatgaatatagtcttcctacaatgttttgttgctacaatttcatgtaacaacatatcaaatgtgtagatatgctcaacattattctgctggtcacaaactagcaaatctgtaatgctactgcaaattcaaatctgtatacagtaaatttgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="2618" stop="7986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2918" g_stop="3439" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6270" g_stop="6506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="758" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7064" g_stop="7190" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="885" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7310" g_stop="7685" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="886" r_stop="1262" r_length="377" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1263" polyA_stop="1277"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-U319404" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1262</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2918" e_stop="3439"/>
          <exon e_start="6270" e_stop="6506"/>
          <exon e_start="7064" e_stop="7190"/>
          <exon e_start="7310" e_stop="7685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATAATAGTATTTTATTTTTCATTAGAGATTTCAATTCGAATATCTTTGTTATAGAGGTTTTATAATTTTTAATATGAAATTTTTAAATTTAATCGTTTTAAATATGAATACGAGACACCGAATAAAAGAAAAGGGAAAGAAGGAAATGGGTCCCTTAGCTTTTTTATTCAACACAAAACTAGAAAAATGTAGATTTGTTACTACAACTACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGATCCCCTTTTGTTATTTTCTTGAATTTATCTGAATGTTGTTGCTTACCTATATGTTGTCATTGATGGGTGTATGTTTGGTTTTTTATCTTGACTGTTGGTCATTGTCTTATGGAAAATTCACTATCTTGTGGTACATGAGTAGTAAAGAAGCTAAAGCTGAGCTTATTGGGTCTCTCAAACTCAAGCTTTTGGTACTTAAAAATCTGATCTTTTTGACTCCCTTTTGTTATTTTATTGATTTTATCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTTTGTTGTCTTTGATGGGTGTGTCTTGGATTGATTGATGGTCATTGTGTTAAGAGAATTTCACTATCTTGTGGTACATAGGTTACTAAGAAGCTAAAGTTGAGCTTATTGGGTCTCTCAAACTCAAGTTTTTGGTGCTTAATAAATCTAATCTTTTTGACCCCCTTTTGTTATTTTCTTGAATTTGTCTGTTTGTTGTTGCTTCCCTATGCAGTTGTTTATGTTGTTTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGATGGTCATTGTGTTATGGAAATTTCACTATCTTGTGGCACATAGGTAGTAAAGAAGCTGAAATGGAGCTTGATGGGTGTCTGAAACTCAAGCTATTGACACTTAAAGCTCTAATCTTTTTGACCTCCTATTGTTATTTTCTTGAATTTATCTGTTTGTTGTTGCTTCCTATGTAGTCATTTGTGTTGCCTTTGATGGGTGTGTCTTGGATTCTTTATCTTGATTGTTGGTTATTGTGTTACGGAAGTTTCACTATCCTGTGACACATAGGTAGTAAAGAAGCTAAAGTCGAACTTATTGGGTGTCTCAAACTCAAGTTATTGGTACTTAAAAATCTAATCTTTTTGACCCCTTGTCTAATTTTCTTGAATTAATCTGTTTGTTCTTACTTATCTTTGCAATTATTTATGTTTCCTTTGATGGGTGTGTCTTGGATTCTTTGTCTTGATTGTTGGTCATTGTCTTATGGAGATTCCACTATCTTGTGGTACATAGGCTAGCCTAGACTTTAATCCTGTTTGCTCTATTGATCCCCTTGGAGTCAATTTCAATATCCTTTCCCTCTTAGTCACATCCGTTGAGCCACCTGGCAGTAAAGAATCTAAAGTTGAGCTTTTTGGATGTCTGAAACTCAAGTTATTAGTACTTAAAGCTCTAATCATTTATTCCTTTTCCTTGAATTAATCTTCTTGTTCTAACCTCCCTATGCAGTTATTTATGTTGCCGTTGATCGATGTGTCTTGGATTCTTTGTCTTGATTATTGGTAATAGTCTTATGGAAATTCCACTATCTTGTGGTAGATAGGCTAGCCTAGACTTTAATTTATTTGCTCTATTGGTCCCCTTCTAGTCAATTTCATTTCCCTTTTCGTGTAAACATTGATTTCCTTGCTCAAAACTCCGTCCATGTGAGCTTGTTAATACATAGCCAACTCCAAATTAGAGCTGAGTAAGATTGTGGTAGGTTGAAAGTCAACAAAGAAATAGTCAAATTAAGATGAATCCTCTCGAAACTTGATTAGACGGGAATGGATACAAAGCTGACTCAACTAATTTGTTGTTGGAGTAGTTGGATTGAATTGATTCTTGGCTTTATTTCTGGTTTCTCTTTTGGGCTTTCTATCATGCAAGTACATTGTTATCCAAGTGATACTGAACTTGTTTGTTACCACCTAAACAGCTCGAGTCACTGAGGAATTAAGTGTGATCTGATGAGGTAAATGACAGATTAAGGCAAAATCTACCTCTGCTCCTGTCTTCTAAAGTGCTACATAAATGTTGAAACTTGAAATTTAGTTTGTGATTCAGAATTTAGTATTTGAGTACGAGGGGGGTTTCATAATATAGTCTAACTCCCTTCTGTAACCTTTTCGTAATCGATTTTGGCTTCTTTAATGGTCAATGACCATGTTTCTCCATTCAAATTCTCCTAGACACCCTTGCGGCAAAAGAGATTACTACTTGTCCCAGCATTTTGTACCATTGAAGGATCTGGTCAGACTTTGAGGCTACTCAACTGAGAGACTAATGAAGATCAGATATTGCTGTTGATGTTGGAATATATATTTTCCTAAAATATTCAGTTCTTGGATTCGCTCTGACTACAGAAATCACCGTTAGAGTGGCAATGTCTAAGGACAAAAAAAAAATGAATACTCTCCTGCTTCAATTGCCAATTAACTTGCTTTACATGCTTAGTATCTTATGGTTTTGCACATCTAAGTGCAACAGAATGGTTGTTGATCTGGAGGGGAAGATGTATGCAACTGATGTTGCTGTCACCATGAGCTTATGCCTATCTCCTTCTTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCGTTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGCTGTCACCATGAGCTTATGCCTATCTCCTTACTGGCTAGGTCCAATATTTGGCAGAACCATTAATATTTTATCATCATTAAGTATAATTGTCATTGGAAGAGGTTGCGAATATTTCCCCGTCTCCTCTTACTGTTCTAAGTTTTTATCTCTTTTCCCCTGGAATTTAATCTTGGTTTTTTAAATTACTTCGTACAATGACATATCCTTATCAATCATCTGCCGTTAAAGCTATAGAGACGTGTGCACTCCTTTGTTATGTATTATATTGATTATAGCAAGTTAGGAGGTTCCTCTTGACAAATGTGTTGATCACTTGCAGAGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAGGTAAGCTAAAAGTACTCATTTAATTCTGTAAGAGCTGGCCACTTCCCGTCCTCTGTTACGAACATGCTTACAGTGGTTAACCATGAATTAAAGAGAACACAGAGTGGTTGGTCGGACATCTATTATGATTACCATAGACATGTTATGAAGAGAACAAAGACAGTTTGTCATCATATTCAGAGGAGAATCTAGGATTTAAGTGACTTTGGAGTACCGTTGCACCCACTACGTCATTGTGATGAGGTCAAAGTTGGTATAAATATATACTTTAAATGAATTTTCAACTCTCCCCCTCTGTGAGTGGTTGCACCCGCAGCTGCTACCTTTGACGTAAATCAGCCCTTGATTATTTCCAGGTTAAGAAGTTGCATTCTTAAAGTCCTATCCTAGATTTGTTGTGGAACATCTTTCCATGGTTTTGCCTTGCAGTTATAAGGATCAATATGTTCATTTCTTTAGCTTGCTGCAGAACAATGTTGAGCGTTCTAATTCACTACTATATATCAAGCTTATATATTGATACACGGTAGCATAATCGACTGATTTGGTTTGATCAGGTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAGGTTGGTTCTGTGTTTTCTCACATCTCTTGGACCAATTGGTATGATTGCTTCTCTTTTTGCAGTACAAAAGTTCTAAAGTTTTCGTATCTCACATCATGTTTATACATTTCCACAAATAGGATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCAC-AGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGAC</genome_strand>
        <mrna_strand>TATATAATAGTATTTTA-TTTCATTTAGAGATTCAAATTCGAATATCTTTGTTATAGAGGTTTTATAATTTTTAATATGAAATTTTTAAATTTAATCGTTTTAAATATGAATACGAGACACCGAATAAAAGAAAAGGGAAAGAAGGAAATGGGTCCCTTAGCTTTTTTATTCAACACAAAACTAGAAAAATGTAGATTTGTTACTACAACTACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG.......................................................................................................................GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGAAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAAACTAGCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341011" ref_strand="+" ref_description="SGN-U341011        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phragmoplast-associated kinesin-related protein 2 (PAKRP2), identical to cDNA phragmoplast-associated kinesin-related protein 2 (PAKRP2) GI:16973450 | chr4:8244190-8247437 FORWARD | Aliases: DL3205W, FCAALL.179(evalue: 5e-27, score=118) genbank/nr: gi|18414189|ref|NP_567426.1| kinesin-related protein [Arabidopsis thaliana] gi|16973451|gb|AAL32293.1| phragmoplast-associated kinesin-related protein 2 [Arabidopsis thaliana] gi|16973453|gb|AAL32294.1| phragmoplast-associated kinesin-related protein 2 [Arabidopsis thaliana](evalue: 3e-25, score=118)">
      <seq>gcacgagtgaaggagatacagagaatccccccgtcgatgaggaggtgcagaaggaggtcattgaggaaaaaacaatatattctgatctgcttgatcaagatatgagttgtttgagaacagatcctgatcatttcattgatttattgaaggacagtgatgtttgtatgggtgcagccccttctaggcaagcgcttattcaaaacattttcacactctgtggcaattatagagagctttctcagcatagtgtaagcccagtgcctgcacagaagaatttggaagatattgattcttcagtacccacagttaagacaattggagaggattatgcatctgcgtgtgctgcagaaggtttgtccaatgaacttttgccattatgcaatcccgagaccataaaaaagtcaccagttaatcagacaagaatgttcaagagctcttgtgacaaagaaaatgattcaaaggagaacttcaaccctacttgtggcaatcttgaagtccacgtgaaatgggaagctgcatcaaaagagaatcctagtgtagcaaccacagtaaaggttggcaaagattcatccttagctgatctgcgcaaacagattgagctacacctcggtgcagacaatccattcactttccttacaataggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="12102" stop="13346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12400" g_stop="13042" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-U341011" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12400" e_stop="13042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGA-TGAAGGAGATACAGAGAATCCCCCCGTCGATGAGGAGGTGCAGAAGGAGGTCATTGAGGAAAAAACAATATATTCTGATCTGCTTGATCAAGATATGAGTTGTTTGAGAACAGATCCTGATCATTTCATTGATTTATTGAAGGACAGTGATGTTTGTATGGGTGCAGCCCCTTCTAGGCAAGCGCTTATTCAAAACATTTTCACACTCTGTGGCAATTATAGAGAGCTTTCTCAGCATAGTGTAAGCCCAGTGCCTGCACAGAAGAATTTGGAAGATATTGATTCTTCAGTACCCACAGTTAAGACAATTGGAGAGGATTATGCATCTGCGTGTGCTGCAGAAGGTTTGTCCAATGAACTTTTGCCATTATGCAATCCCGAGACCATAAAAAAGTCACCAGTTAATCAGACAAGAATGTTCAAGAGCTCTTGTGACAAAGAAAATGATTCAAAGGAGAACTTCAACCCTACTTGTGGCAATCTTGAAGTCCACGTGAAATGGGAAGCTGCATCAAAAGAGAATCCTAGTGTAGCAACCACAGTAAAGGTTGGCAAAGATTCATCCTTAGCTGATCTGCGCAAACAGATTGAGCTACACCTCGGTGCAGACAATCCATTCACTTTCCTTACAATAGGG</genome_strand>
        <mrna_strand>GCACGAGTGAAGGAGATACAGAGAATCCCCCCGTCGATGAGGAGGTGCAGAAGGAGGTCATTGAGGAAAAAACAATATATTCTGATCTGCTTGATCAAGATATGAGTTGTTTGAGAACAGATCCTGATCATTTCATTGATTTATTGAAGGACAGTGATGTTTGTATGGGTGCAGCCCCTTCTAGGCAAGCGCTTATTCAAAACATTTTCACACTCTGTGGCAATTATAGAGAGCTTTCTCAGCATAGTGTAAGCCCAGTGCCTGCACAGAAGAATTTGGAAGATATTGATTCTTCAGTACCCACAGTTAAGACAATTGGAGAGGATTATGCATCTGCGTGTGCTGCAGAAGGTTTGTCCAATGAACTTTTGCCATTATGCAATCCCGAGACCATAAAAAAGTCACCAGTTAATCAGACAAGAATGTTCAAGAGCTCTTGTGACAAAGAAAATGATTCAAAGGAGAACTTCAACCCTACTTGTGGCAATCTTGAAGTCCACGTGAAATGGGAAGCTGCATCAAAAGAGAATCCTAGTGTAGCAACCACAGTAAAGGTTGGCAAAGATTCATCCTTAGCTGATCTGCGCAAACAGATTGAGCTACACCTCGGTGCAGACAATCCATTCACTTTCCTTACAATAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331558" ref_strand="+" ref_description="SGN-U331558        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:9704313-9706977 REVERSE | Aliases: None(evalue: 4e-06, score=49.3) genbank/nr: serine-rich(evalue: 8e-05, score=51.2)">
      <seq>aataatgtccctctctcgtcttctttcaatcaaattgcgaccgttaatcaacacagtagaatgtagaagatggtgttcttcagtgaatggtaagggtgaaatttcacagccgttgaagaaatcagaagtgatggtgcaactgaaagacagagatgtggagatagctgaaaagaagcatatgactgaaaatgaagaggtctttcctagagaaacacgtgtccagaaggaagtagattcgtggaatagtttggtagcgacctttcaaataactaaaaagaagatatttagaaatattttggagcagaagagcagtagcactcattcattaacttccacttctgatcttaaggattctgataatgttgtatctgctcatagtcatgatagtggaagtatgaataatcttaagagtacaattcgttcagaaaagacgtctataactaatatggaagaaaatgttgacagtaaaacatctctgtcttcttttatagccgttgagattgttaatatgaaaaacacttcaaatacagttgagactgaggaatcgcgaaatatctcgtcaaaagaatgtgaaggaagcactgactacggggtaaatgacatgtcttccggtgcatcatctatctgcaggaaagccgattccaacgacggtgttcaactgattaatgatttccatcattcagagttcgttaagaaagagagagaacaattgctagctgaggaagcatcatcaagtttacaaatcagttctggcgaagagatcctgtcaaaatctgaggacgcacgtatcgtagaacatcggatgcaaattgagatacctaggacatcacatagaatttctgcaaataaatctggttcaactgcatctgaaagccaggaggacattatgaagaagttcaaattttcgtcgaatcagattgttgccccaaagagcgaaaaatctgtacctagagagtttgagcaccttcatgaaacttctcagaatactttcggcaagagtggcgacataaagggcttaatagaatgtattagggtgctccctcctcagaatcattctgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="26638" stop="23746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26336" g_stop="26222" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="174" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26221" i_stop="24934" i_length="1288">
            <donor d_prob="0.805" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24933" g_stop="24046" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="1062" r_length="888" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U331558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1003</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26336" e_stop="26222"/>
          <exon e_start="24933" e_stop="24046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTAGAAGATGGTGTTCTTCAGTGAATGGTAAGGGTGAAATTTCACAGCCGTTGAAGAAATCAGAAGTGATGGTGCAACTGAAAGACAGAGATGTGGAGATAGCTGAAAAGAAGTAAGATCTCTTGATTAGAAAGAGTATGCGCCTTTAGCTACATTTTGAGCTTAACTATTTGGTTGAAATTTGATGTTAATATAATTAAGGTCCTTAAAATTATTAGTTGCTTACTAAGTATGCATTCCACAAGATGATTATCAACGAATAAGATGTTTTCTGATAGCATACAAATAAGATTTTTCGATGGACATGTACTTGTAAAAAATTAGAAATAATCACACTCGAGGCAGACGGTACAAGTAGAACATAGAGATAATAAATGAGAATGAGATGGCTTGACTATGTCCTACATTGACCGCTGAATGCACCAGTACTTCAGTGCAACATTATGGCGTTATAAAAAAGAACAAGTTATACCTAAAGTCACATGGAGGGTAGTTGTCTCAATGATATGCCATCTCTTTGAATCTATGCGAATTTAACTAAGAAGAGAATTCATATAGGCAATGAGGTTCAATAGTGTTAGCGCACTTACATAAGGTGTGGTGTCAGTTAGATATTTGTACATGAAGTGTAGAACTATCGGTTAATTGAGTATTTGGTTTGATTTAGACTTTTATTTGTGCAAAGTGTATACTTGCATTACGACATATATGTTGTGATATACATTTATTAACCATATCCTAGCACCCGTACTTCAGTTCGTAGCCCCGAATCCTAAAATTTATTTGATGATGAATTCGACCTGTAGATCTACACCCATATCGGATGTCGGCACCCATATCCGAGCAACATAGGTTGTAAATGATGTCTCATCGTCAAAAGGTCAGGGCGATCTTCCTTTGGGAATACATGCCTACGTAGTAGCTGAGGTTGTTTAACTGTCATAACTGCACAGTGGAGATCATCACGATGAAATATGTTCCAGTTTAACTGTCAACATGAATGTTAGGTATCTAAAAGTAGAGAGTGCAATTTTCTAAAACTAAGTTAGAAGGTGAATTGGGATTTTGTAGCATGCTTCGAGATGTGAAATGGATATCATACTAGTGATGGACTAATTTCATGCAGATCAATTGCTTTTTTATTTCTTTGGATTACACTAGTCTATGCAGTAGAGTCATATTTACATGGTGCTTTGTTTCTTATTTCTACTTTTTTCCTCTCTGTTTTTGATAATATAGATTCTCCAGCTTGCAAAAGTCTACAGTATTTTGTGTATTTGAGTGCCAGTGTATCTGTTTTTTCCATTTCGTAACAATAAGCACTCTTTTATTTCTTACACAAGTTTATCCTCTAATATCTCATTTGTTCTGAAACATTTCTCGGATCATTGTTGTTATAGGCATATGACTGAAAATGAAGAGGTCTTTCCTAGAGAAACACGTGTCCAGAAGGAAGTAGATTCGTGGAATAGTTTGGTAGCGACCTTTCAAATAACTAAAAAGAAGATATTTAGAAATATTTTGGAGCAGAAGAGCAGTAGCACTCATTCATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTAAGAAAGAGAGAGAACAATTGCTAGCTGAGGAAGCATCATCAAGTTTACAAATCAGTTCTGGCGAAGAGATCCTGTCAAAATCTGAGGACGCACGTATCGTAGAACATCGGATGCAAATTGAGATACCTAGGACATCACATAGAATTTCTGCAAATAAATCTGGTTCAACTGCATCTGAAAGCCAGGAGGACATTATGAAGAAGTTCAAATTTTCGTCGAATCAGATTGTTGCCCCAAAGAGCGAAAAATCTGTACCTAGAGAGTTTGAGCACCTTCATGAAACTTCTCAGAATACTTTCGGCAAGAGTGGCGACATAAAGGGCTTAATAGAATGTATTAGGGTGCTCCCTCCTCAGAATCATTCTGTTGT</genome_strand>
        <mrna_strand>AATGTAGAAGATGGTGTTCTTCAGTGAATGGTAAGGGTGAAATTTCACAGCCGTTGAAGAAATCAGAAGTGATGGTGCAACTGAAAGACAGAGATGTGGAGATAGCTGAAAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATGACTGAAAATGAAGAGGTCTTTCCTAGAGAAACACGTGTCCAGAAGGAAGTAGATTCGTGGAATAGTTTGGTAGCGACCTTTCAAATAACTAAAAAGAAGATATTTAGAAATATTTTGGAGCAGAAGAGCAGTAGCACTCATTCATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTAAGAAAGAGAGAGAACAATTGCTAGCTGAGGAAGCATCATCAAGTTTACAAATCAGTTCTGGCGAAGAGATCCTGTCAAAATCTGAGGACGCACGTATCGTAGAACATCGGATGCAAATTGAGATACCTAGGACATCACATAGAATTTCTGCAAATAAATCTGGTTCAACTGCATCTGAAAGCCAGGAGGACATTATGAAGAAGTTCAAATTTTCGTCGAATCAGATTGTTGCCCCAAAGAGCGAAAAATCTGTACCTAGAGAGTTTGAGCACCTTCATGAAACTTCTCAGAATACTTTCGGCAAGAGTGGCGACATAAAGGGCTTAATAGAATGTATTAGGGTGCTCCCTCCTCAGAATCATTCTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329081" ref_strand="+" ref_description="SGN-U329081        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP1-interacting protein-related, contains similarity to COP1-Interacting Protein 7 (CIP7) (Arabidopsis thaliana) GI:3327868 | chr5:17396819-17402615 REVERSE | Aliases: MNL12.14, MNL12_14(evalue: 5e-22, score=100) genbank/nr: gi|18422318|ref|NP_568624.1| expressed protein [Arabidopsis thaliana](evalue: 3e-20, score=100)">
      <seq>agcatactaataagctagacaaagcttcctcacataatagactgatgagtcttttgtagtacctttaggtcaatgtcattgactgacgttggacagatggtagaactgcccattaacatggactctgagcttccattggcgcatcaaaaatcagaaaacagctctgctgggattatgagttacgagcctaatgattttagcttgatgtctgagcgtggaacagaaaaaaggttgggtctctatgaccctgctttagactatgaaatgcaagtttgcaatgaaggttctgcttcaaaggataaaagaaagaatggagtctccaatgatgttaaggaaggttcaaaaaaatcagagaaagatcgcaggtcaaaagctactgttgatacttcggacaagaaaaggagtggaggaccaataagaaaaggaaaaatgtcaaagtcaagtcctttggatgatgcacgagcacgtgctgagaggataagatccttcaaagctgatatgcagaagatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="37527" stop="8857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37227" g_stop="36704" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36703" i_stop="36553" i_length="151">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36552" g_stop="36547" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="528" r_length="6" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U329081" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37227" e_stop="36704"/>
          <exon e_start="36552" e_stop="36547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATATGACTGATGAGTCTTTTGTAGTACCTTTTAGGTCAATGTCATTGACTGACGTTGGACCAGATGGTAGAACTG-CCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAGGTACACTGACTCAACCTTTTCTCACTTTACCCCTTTTTCCACAGATGACGATTTTAGTGATTGATATATCGCTTGATATTTCTTGGAAATCTAACCTGTTTATGATATATTCTCCTCCAAGTTTAATAGGTGGAACTTTAAAATTTTGCAGGAAGAG</genome_strand>
        <mrna_strand>AGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATA-GACTGATGAGTCTTTTGTAGTACC-TTTAGGTCAATGTCATTGACTGACGTTGGA-CAGATGGTAGAACTGCCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAAAAAAA.......................................................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346702" ref_strand="+" ref_description="SGN-U346702        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | COP1-interacting protein-related, contains similarity to COP1-Interacting Protein 7 (CIP7) (Arabidopsis thaliana) GI:3327868 | chr5:17396819-17402615 REVERSE | Aliases: MNL12.14, MNL12_14(evalue: 5e-32, score=134) genbank/nr: expressed(evalue: 7e-31, score=137)">
      <seq>gaaagggtatcaccattgattgagatcttgagattgaggaagcaatgcccttcaaggaaacaatgtagtgggcaggggccagctgaatacaaagaagctaaaccagcaggaaacattgcaggtactaaatctacagcagatgtcaatgaggagaaagctattgttctttacaagccgggggaagatcaacctcaaacagatttgcaggaagaaaattcaagagtacagtttctgaaggtcctggagactcgcaagtctgtgcttcaaaaagaacaaggaatggcatttgctcgtgctgtagctgctggttttgatattgatcgtatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="40932" stop="38799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40632" g_stop="40546" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40545" i_stop="40464" i_length="82">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40463" g_stop="40424" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="121" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40423" i_stop="40050" i_length="374">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40049" g_stop="39997" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="174" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39996" i_stop="39920" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39919" g_stop="39873" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="221" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39872" i_stop="39208" i_length="665">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39207" g_stop="39099" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="330" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U346702" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40632" e_stop="40546"/>
          <exon e_start="40463" e_stop="40424"/>
          <exon e_start="40049" e_stop="39997"/>
          <exon e_start="39919" e_stop="39873"/>
          <exon e_start="39207" e_stop="39099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGTATACACCATTGAATCTGAGATCTTGCAGATTGAGGAAGCAATAGCCCTTCAAGGAAACAATGATAGTGGGCAGGGGCCAGTAAGTATTTACTTGATCTTCAGAAATTCCATGTGTCATTGATTGTCAAGACGCCACTCCAACAATTTTATTTCTTCAACAGGCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAGGTACTTCTGAGTGAAAACTTGTATCATTATTAACAGAACAAGGCCAATTCATTTTCTTTTTCGTTCTCATCATCACACAGGTCAAGTGGTACTCTGTTCTAAACTCTATGGTCTTGGTTTCTTGGCTAATTTGACTCTTCCACTTTTAACTTTTTCCCCCCTTCAATTGCTCATTGTTTGGTTCCTCCATTTGCAAGGAAATATTGCTTTTGATATCAATCTAGACAGTCTAAGTTCCTTACTTATTTTTGTCAATAAATCTTTCTTCTTCTTCCATCTTCTATCAGCTAAATAGCAGTGGGCTTTATCATCCAGTGTTATGTGAAATTGCTAGTCTATGACACAAGGTACTGAAAACACTGAACTATGGGCAGGTACTAAATCTACAGCAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAGGTGACTGAACACATTGTATTCTTTCAAGTGTTCCACACTTTATGCATTTATCCTTATCTGGTTTATTTTTCGGGCAGCCGGGGGAAGATCAACCTCAAACAGATTTGCAGGAAGAAAATTCAAGGTATGTGAGTGGCAAATCATTTCAGCAGATTTTTCTGTTCGTTGAAATTACAGGAGACTGTGGTCTCACTTTATCATCATGTGGATTAGGATCGTTGATGATAATTTATCAAGTAGAAGAATTTGACAGATTCTTTTTTGCATCTTTGTTCCTTTGTCAGTGGCGATGTAGCCTTAGGTATGGGTTTAACCGAACTCATATTTTTGACCCGGAACATTTATGATCCTCCACATTATTCAAACCATGGCTAGTCAAAGTTCACTATTATTTCTTTATCTATTGTACGCCTGTCTTTGTTCACGATTCTCTGCTTAAAAACAAATCCTTGTTCCCAGCCCCTTAGTCTTTATGCATGTCGGCTTGTTTCAATATTGCATATTATGTTGGCGAGTCCACTCTCATTGGCCTCCAAACTGGGCCAGTCAAAATAAAGGCTGGATTCACTTGTATTTTATTTCCATTTTTTAGTTTTGACATAAGGTGTGTGTCACCAGCCTATGCTCATGCTTTCTGAAGTTTCCTTCAGTTTGTTATTGGTTTGGTAGGCCTTAAAGAATCTCTAGAAACTTATATGGAGTCCTTTGCGCTTGTTACATATATGAAAAGCCTAATTATTCAAGTTTAGTAACAGCTCGAACGCATTTTGATTGCTTTTTCTTATCCAGAGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGATCGTATGACA</genome_strand>
        <mrna_strand>GAAAGGGTAT-CACCATTG-AT-TGAGATCTTG-AGATTGAGGAAGCAAT-GCCCTTCAAGGAAACAATG-TAGTGGGCAGGGGCCA..................................................................................GCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAG......................................................................................................................................................................................................................................................................................................................................................................................GTACTAAATCTACAGCAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAG.............................................................................CCGGGGGAAGATCAACCTCAAACAGATTTGCAGGAAGAAAATTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGATCGTATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328091" ref_strand="+" ref_description="SGN-U328091        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | casein kinase I (CKI1), identical to casein kinase I (Arabidopsis thaliana) gi:1103318:emb:CAA55395 | chr4:8248282-8251964 REVERSE | Aliases: DL3210C, FCAALL.68(evalue: 3e-10, score=62) genbank/nr: gi|62996992|gb|AAY24540.1| casein kinase 1-like protein 11 [Arabidopsis thaliana] >gi|2244791|emb|CAB10213.1| casein kinase I [Arabidopsis thaliana] >gi|1103318|emb|CAA55395.1| casein kinase I [Arabidopsis thaliana] >gi|7268139|emb|CAB78476.1| casein kinase I [Arabidopsis thaliana] >gi|16974431|gb|AAL31141.1| AT4g14340/dl3210c [Arabidopsis thaliana] >gi|15450525|gb|AAK96555.1| AT4g14340/dl3210c [Arabidopsis thaliana] >gi|9965745|gb|AAG10149.1| casein kinase I [Arabidopsis thaliana] >gi|15236471|ref|NP_193170.1| casein kinase I (CKI1) [Arabidopsis thaliana] (evalue: 2e-08, score=62)">
      <seq>ggagggctgtaatgggaagcagccggcccagctcatctggcgaacccactgacaatcgctctggtcgcttaggttcaagcagcggccgcatttccactacccaaagagtacaacctggatttgaatccaagtcttcatcttttacccgcgctactgcaactagagggggtagggatgatgctcttaggagctttgagttactaactattggcaccggaagaaggaaatgaggctatataatgtctaatatctacccccaagttgaacagcaagttgagcagctatcttcaaggacttatcaacaagcatgcactgattcttgcaatttaacaaacttgctaaactttcaagagatagaggggtgtttctgttttgtatatttgagaatacctctctaatgtgatgttgtagaccgggatctctctcgaaaaataaaaaatatttcacatctggccattgctcccctgatgtgcatggctgctatgcttgcgaacggggaggatgttaatggcgaaagtaaatagctcatggttatgcagtgtagctccgattacttaaggggctacctcagtacttccttttagttgtgtggttcttgtgcccagaattgttatcatatacttttatgttatgtaccctctaatttttcttcctatattaacttgttactatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="53669" stop="52286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53369" g_stop="53109" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52999" g_stop="52585" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="676" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U328091" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53369" e_stop="53109"/>
          <exon e_start="52999" e_stop="52585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAGGTACCAAAACTTTTAACCGCTGATATCATGATATTCAAGTACTATTTTCTTATTCTTGATACTACTCCTCAGCTAATATGAACTTATCGTTACCGTCTTTTCCTTATAGTTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTGCTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTATATTAACTTGTTACTATGAAC</genome_strand>
        <mrna_strand>GGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG.............................................................................................................TTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTGCTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTTTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTATATTAACTTGTTACTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339262" ref_strand="-" ref_description="SGN-U339262        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | casein kinase I (CKI1), identical to casein kinase I (Arabidopsis thaliana) gi:1103318:emb:CAA55395 | chr4:8248282-8251964 REVERSE | Aliases: DL3210C, FCAALL.68(evalue: 4e-10, score=62) genbank/nr: gi|62996992|gb|AAY24540.1| casein kinase 1-like protein 11 [Arabidopsis thaliana] >gi|2244791|emb|CAB10213.1| casein kinase I [Arabidopsis thaliana] >gi|1103318|emb|CAA55395.1| casein kinase I [Arabidopsis thaliana] >gi|7268139|emb|CAB78476.1| casein kinase I [Arabidopsis thaliana] >gi|16974431|gb|AAL31141.1| AT4g14340/dl3210c [Arabidopsis thaliana] >gi|15450525|gb|AAK96555.1| AT4g14340/dl3210c [Arabidopsis thaliana] >gi|9965745|gb|AAG10149.1| casein kinase I [Arabidopsis thaliana] >gi|15236471|ref|NP_193170.1| casein kinase I (CKI1) [Arabidopsis thaliana] (evalue: 3e-08, score=62)">
      <seq>gtagggatgatgctcttaggagctttgagctactaactattggcactggaagaaggaaatgaggctatataatgtctaatatctacccccaagttgaacagcaggttgagcagctatctcaaggacttcccaacaagcatgcactgattcttgcaatttaacaaacttgctaaactttcaagagatagaggggtgtttctgttttgtatatttgagaatacctctctaatgtgatgttgtagaccgggatctgtctcgaacaataaaaatatttcacgtctggccattgctccccttttttcccctgatgtgcatggctgctatgggaggatgttaatggcgaaagtaaatagctcatggttatgcagtgtagctccgattacttaaggggctacctcagtacttcctcttagttgtgtgcccagaattgttatcacatactttatgttatgtaccctctaatttttcttcctatataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="53501" stop="52300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53201" g_stop="53109" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52999" g_stop="52605" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="475" r_length="382" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="495"/>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U339262" ref_strand="-">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339262" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53201" e_stop="53109"/>
          <exon e_start="52999" e_stop="52605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAGGTACCAAAACTTTTAACCGCTGATATCATGATATTCAAGTACTATTTTCTTATTCTTGATACTACTCCTCAGCTAATATGAACTTATCGTTACCGTCTTTTCCTTATAGTTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTG-CTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTAT</genome_strand>
        <mrna_strand>GTAGGGATGATGCTCTTAGGAGCTTTGAGCTACTAACTATTGGCACTGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG.............................................................................................................TTGAACAGCAGGTTGAGCAGCTATC-TCAAGGACTTCCCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTGTCTCGAACAAT-AAAAATATTTCACGTCTGGCCATTGCTCCCCTTTTTTCCCCTGATGTGCATGGCTGC-TA-TGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTA---GT-T-G----TGTGCCCAGAATTGTTATCACATAC-TTTATGTTATGTACCCTCTAATTTTTCTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337137" ref_strand="+" ref_description="SGN-U337137        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: CKL10 | casein kinase, putative, similar to casein kinase I (Arabidopsis thaliana) gi:1197461:emb:CAA55396 | chr3:8350810-8353966 FORWARD | Aliases: MLM24.21, CKL10(evalue: 3e-131, score=465) genbank/nr: gi|50915736|ref|XP_468332.1| putative casein kinase I [Oryza sativa (japonica cultivar-group)] >gi|47847810|dbj|BAD21585.1| putative casein kinase I [Oryza sativa (japonica cultivar-group)] (evalue: 8e-136, score=474)">
      <seq>caaactggagaagaagttgctgtgaagctggaatcaactaaaaccaagcaccctcagcttcattatgaatcaaagctgtatatgcttctacaaggaggaactggaattccacacctcaagtggtttggcgttgaaggtgaatacaatgccatggttatcgaccttcttggaccaagtttggaagacttgtttaactattgcaataggaggttcactttaaagacagctttaatgctggcagatcaactgattaatagggttgaatatatgcactcaagaggatttcttcaccgtgatattaagcccgacaacttcttaatgggtttagggcgtaaagcaaatcaggtatacatcattgactatggtcttgccaagaaatacagagatcttcagacacacaagcatataccatacagggaaaacaaaaacctcacaggaacagctcgttatgctagcgttaacacccatcttggagttgaacaaagcagaagagacgatctggagtctcttggttatgtgcttatgtattttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="65723" stop="54748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65423" g_stop="65394" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65393" i_stop="64790" i_length="604">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64789" g_stop="64720" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="100" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64719" i_stop="64621" i_length="99">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64620" g_stop="64472" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="249" r_length="149" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64471" i_stop="64396" i_length="76">
            <donor d_prob="0.581" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64395" g_stop="64300" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="345" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64299" i_stop="63207" i_length="1093">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63206" g_stop="63136" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="416" r_length="71" r_score="0.887"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63135" i_stop="62496" i_length="640">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="62495" g_stop="62434" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="478" r_length="62" r_score="0.887"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="62433" i_stop="62358" i_length="76">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62357" g_stop="62301" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="535" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U337137" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65423" e_stop="65394"/>
          <exon e_start="64789" e_stop="64720"/>
          <exon e_start="64620" e_stop="64472"/>
          <exon e_start="64395" e_stop="64300"/>
          <exon e_start="63206" e_stop="63136"/>
          <exon e_start="62495" e_stop="62434"/>
          <exon e_start="62357" e_stop="62301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTGAAGAAGAAGTTGCTGTGAAGCTGGTGAGTATGTTGATTAGCTGAACGCTGAAGCTGGAAGTTCACCACATAAACATGGTGTCAATTGTGTTAGGATTTAGCCTTTCACTGGAATTGAATAAAATTTTAAAAGTTGTTTTTTCGGAAGCTGAAAATTCACTCCACAATTTGCTGTCAATTGTCTTAAGATTGAGCCTTTCTCTAAGTAAACTTAGCAACCTGATAAAGTTGAGAAGAATGACCATTTCACTGGAAGATGAGAGGATTATTCTTGAATCATAAGTTTTCATGATATAAAAATTAAAATATGATAGATGACCATTGCTATTTTGGCTGAATGTTCAAATGACATTATTTATTTGGCCCTTTTCTCGGTTCTAGTTTGTTGGTGTGCATTTGCTGGATATAGCTTCTATTTCTGAAGAGTCTTGAATAATTTTGCTTAATTATTCAAGATCAGCATATTTGTTTGGTAGGGGACCGTATTGTGATATATTTATGGACTTCATTTGTGGTTTGCTTCTCACCAGTTGTCCGGGGTGTGTTTCAAGTGCTATGTTTAATATTATGGTTTCTTCTTTGGTACATTAGCTTTGCTGTTCCCAAAATCTAAATTTTTGGTTTGCAGGAATCAACTAAAACAGAACACCCTCACCTTCATTATGAATCAAAGTTGTATAGGCTTCTACAAGGAGGAAGTAAGTGATAGCTTCTACCCATGAATTTCGATGACTCTTATATTTTCTTGCTAAAGTGTTTTTTTAAATTTTTTTTTTTTATCATTTTCATATTTCAAGCTGGGATTCCAAACGTCAGGTGGTTTGGCGTTGAAGGTGAATACAATGCCATGGTTATTGACCTTCTTGGGCCAAGTTTGGAAGACTTGTTTAACTATTGCAATAGGAGGTTCACTTTAAAGACAGTTTTAATGCTGGCAGATCAATTGGTAAATAGCCAAAATTATATGCTGATCAAAGCATAATAATTGCAGCTGGTTGCCTGATACTTATTCTCTGATGCAGATTAATAGGGTTGAATAAATGCACTCAAGAGGATTTCTTCACCGTGACATTAAGCCCGAAAACTTCTTAATGGGTATAGGGCGTAAAGCAAATCAGGTGTGCACTTCATCATATGTTCTCTAAGTGTACATGTATGTCTATGGTTGATAACAAGGTTATGTGCTCCTATTATTTTCCCTAGATATTCTGGAAAGCTCTCCACCTACTTGTTTAGGAACTAAATCACCGACGAACTAGACAAGTTGGTTATCTATTAGGGTTTAGGGTTACAAGTGCTACTCCAGCATTTGTGGAGCTGGAAATATTGTAGCCTGCTTGTTAAGCTTGAACTTTAATTTGAGATGGAAGGGTTACATTCTTTTTTTGGATATTCTCTAATTTCACTCAAGAACATGTACTTCTTATCTTTTTCTCTCGTGTTCCTCTCTGCCATTCTCTTCTCTTAGAGCTCAATGAAGTTGATCCTTGTGATATGAACCTTTGCATTCTTGTCCAAGAAGGCTCTAGCTAACTAACCAGGTGTGCATTTCTTTCAGTTTCCTGGAACAGAGCTCAAAACTCTGTGCATTGTGCAATAGCATATTCTTGGAAATTTCTTCTTTTAAGAACTGGTACTATTGAAAAATTTGTAAAAATTCTTGGACACATTTAATATGTTGAAAGATTCGCCTCTTTCTTTAGTTTATGTTTTCCAGCATAATGCTTATGTTTGAGCTTGGGATGCCAACAAACAACAACAATATACCCAGTAATTGCGAACAAAATTCTGGTAATTAGGCACTTGCAAGCTATGTTGCTCGGACTCTCCGAAAATGGTGCCGCACCCGGGTCGGATCCTTCAAAATGCGCTACTTTTGAAGGATCTGATATGCACCAGTCGGCATTCTTGAAAAGTCCGAGCGACATAGCTTGCAAGTGGAAGAAATTTTTCCTACTGGAGAGGAGGATAAAGTTCCTCCAATCTTGAATTTGTAAACAAACTAACCTAGCCAGAGAACCTGTCATCCTATCTTGTAGTATGCTACTAAACATGAACATTTTGTAATTACTTGATCAGCAGCTTCCTGTCTCTGTAGTACCTTTGTAAATCTACATTAGAACGAGTTTATGAATCTGATGAAAAATAATTCCCATGACATAACCTATGCATCTCTAAGTCAGTTTTGAGCGTTCTATTTTGTTAAAGCAGGTATACATGATTGACTATGCTCTTGCCAACAAATACAGAGATCATGAGACACATGAGCATATACCATTCAGGTATCAACTTCTTCTGTTCCTTAAAGATCTCATATGTCTTCCATTTCTAGAAATTAAAGTGGAATATTACTTGCTAAGGTGATTTAATAATTGGTCAATTCAGTACAATGTGTTAGTAACGACGATTGCTTGAGAAGCTGAAGGTTGAATCTTTTTCCAATTGTTTCTTTGGCGGCTTCGTTTTTTGACCTTTTGGGTTAATGAGGAGTTAAACTTTTGCTCGAACCTAGTTATGTCCTTCCCTTGTTGTTAATATTTGTTTCAAAGATCTCTTTTGCATAAGCTTAACCAAAGAAATTAAAGCTGCCCTTATTGATACAGAAAACCATCTTGTTTGATTAGATCTGTGTAGATTTTGAATGCACATGGTGTACTATGTTATTGAGAAAATAAAAAGGTGGATGAAGAGGTACTCCATTCCTGCTAAGATGCTTCTCTTATTTTGTTCTTTTCCTTTCTGTCTCTTCTATATATTATTTCAAGCTTCTCAATAGTAGATATTGAAATCAAGAAAGAAATTTGGAGGTTCTGCTTTCTTTTTAAGCTTTTCTTTCCTTGACCTTATTTTTAATAGAGTTTAGAGTGGATGGTTGGAGTGTAATATGGATTATTGAACGACTTATTTTGCTTCCTTTGACAGGGAAAACAAAAGGCCCACAGGAACAGCTCGTTATTCTAGTGTTAGCACCCATCTTGGATTTGGTAAGTGAGGATGATATTACCTGAAGCACCTAATATATTTTAAACTTTACATATTACTTCTCTTCCTTGTATGCAGAACAAAGCAGAAGAGACGATCTGGAGTGTCTTGGTTATGTGCTTATGTATTTTTTGA</genome_strand>
        <mrna_strand>CAAACTGGAGAAGAAGTTGCTGTGAAGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCAACTAAAACCAAGCACCCTCAGCTTCATTATGAATCAAAGCTGTATATGCTTCTACAAGGAGGAA...................................................................................................CTGGAATTCCACACCTCAAGTGGTTTGGCGTTGAAGGTGAATACAATGCCATGGTTATCGACCTTCTTGGACCAAGTTTGGAAGACTTGTTTAACTATTGCAATAGGAGGTTCACTTTAAAGACAGCTTTAATGCTGGCAGATCAACTG............................................................................ATTAATAGGGTTGAATATATGCACTCAAGAGGATTTCTTCACCGTGATATTAAGCCCGACAACTTCTTAATGGGTTTAGGGCGTAAAGCAAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACATCATTGACTATGGTCTTGCCAAGAAATACAGAGATCTTCAGACACACAAGCATATACCATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACAAAAACCTCACAGGAACAGCTCGTTATGCTAGCGTTAACACCCATCTTGGAGTTG............................................................................AACAAAGCAGAAGAGACGATCTGGAGTCTCTTGGTTATGTGCTTATGTATTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316387" ref_strand="+" ref_description="SGN-U316387        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: AT4G14350.2 | Symbol: None | protein kinase family protein, contains similarity to Swiss-Prot:O13310 serine/threonine-protein kinase orb6 (Schizosaccharomyces pombe) | chr4:8256082-8260571 REVERSE | Aliases: None (evalue: 0, score=874) genbank/nr: gi|62857016|dbj|BAD95893.1| Ser/Thr protein kinase [Lotus corniculatus var. japonicus] (evalue: 0, score=907)">
      <seq>tcaattagaaaagaggacaaagctctttcctttctctctctctccctctcacacattgttgtgtgtttccatggtgaattgatgccaccaaagcacaaagtggtcatccccactcccacacaactcttcttcttcaactaacacaacatctttctcacttttttgttttccctctttttcatctttagggttttcctttttattttttttattttttcaaccattcacaattcaactgtgttttaccaacaacccaacttatctgatttcacttggtaaaccaaatatttatcttttgtccattttgggttttgttgatttggcacagagcaagcagaattaggcattcttgaatcattttttgaggcagagcattcaaaaattggttccttatggtgttccaaagttcgctttataattgattactagaatacttgttgtcgaaggaagaaaaagttgctcttgcagagttctatctcttgtgattatttctcctatctttagtaagttgactaaggtggaggatggagtctgccaaacgatggttctgtaagcttggcaagaaagataagcctaagcctcccaagaagcaggaaactactagtaatgggaaagaagggtcgaaattgtcgcctcatgaggaagcaccttcaactgccactaaacagaaagttgcagctgccaagcagtacatagaaaaacactacaaggaacaaatgaagagcttgcaggagcgtagagagcgacgcaatatgcttgaaaaaaaattagctgatgctgaggtttccgaggaagagcagagcaatttactgaagtaccttgagaaaaaggagacagaatttatgcgcattcaaaggcataaaatgggtgctgatgattttgagcctctgacaatgattggaaagggtgcatttggggaggttagaatatgcagggagaaggcaactagtcatgtctatgccatgaaaaagctaaagaagtcagaaatgcttcgtagaggccaggttgaacatgttaaagccgaaaggaatctgcttgctgaagtggagagcaattgcattgttaagctatattgctccttccaagatgaggagtatctttacctaataatggaatatcttcctggtggagatatgatgactttgctgatgcgcaaggatactttaacagaagatgaggccaggttttatgtgggggagaccgtccttgctatagaatctatccataaacacaattatattcacagagatatcaagcctgataacttactacttgataaacatggacacatgaagttatcagattttggattgtgtaaaccgctggactgcagtaatcttcaggaaaaggatttcacagcggcaaataagttaagtggcgctcttctaagcgatggacgcccagcccctccaaggcgcactcaacaggagcaactattgcattggcagaagaataggaggatgcttgcttattccactgttgggacacctgattacattgctccagaggttttattgaagaaaggatatggatgtgaatgtgattggtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatggctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccctcgtcaagtcaatagctttcgttgttgtgtttttataacctaggtgtattccaagtgtaagtaaagtattcacgacgaaggcagttttgcaaattctggtgcaactgccttggttcatagtttgcgcttgttttgtgtaaattgtttcttggaagtacatatatcattctttttgttgctagtttgtaattttgcttactcactaagctgcagaaacttgtgaccttgttcttgtaatctctttcaactttgggtttatttatttcaatagccctattctctatagatgaatgttcttgctggttttttctattaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="78074" stop="57239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77774" g_stop="77409" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76478" g_stop="76100" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="745" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75071" g_stop="74897" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="920" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74301" g_stop="74218" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="1004" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74132" g_stop="73891" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1005" r_stop="1246" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73765" g_stop="73546" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1247" r_stop="1466" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="72660" g_stop="72581" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1467" r_stop="1546" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1547" r_stop="1631" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1632" r_stop="1763" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1764" r_stop="1877" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1878" r_stop="1925" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="69938" g_stop="69854" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1926" r_stop="2010" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="69753" g_stop="69697" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="2011" r_stop="2067" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="68888" g_stop="68399" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="2068" r_stop="2557" r_length="490" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="68398" i_stop="68336" i_length="63">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.782" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="68335" g_stop="68312" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="2558" r_stop="2581" r_length="24" r_score="0.583"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U316387" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77774" e_stop="77409"/>
          <exon e_start="76478" e_stop="76100"/>
          <exon e_start="75071" e_stop="74897"/>
          <exon e_start="74301" e_stop="74218"/>
          <exon e_start="74132" e_stop="73891"/>
          <exon e_start="73765" e_stop="73546"/>
          <exon e_start="72660" e_stop="72581"/>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69854"/>
          <exon e_start="69753" e_stop="69697"/>
          <exon e_start="68888" e_stop="68399"/>
          <exon e_start="68335" e_stop="68312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAGGTAAAGTTTGAGTCTTTATTGTTATTGCTTTTACTTTTTTTCTGTTCACAGTTCAACTGTGTGTTATTCCCAACAACCCCACTATCTGATTTCACTAGGTAAACATAATACTCATCTTTTTTTCCTTTCTGGGGTTTGTTGATTTGGTACTCAGCAAGAAGAATTAAGCATTTTTGAGGTACAGTTTGAGTCTTTTCTGTTAAATAGTCAGGTTTAGTTTTTGGGATCGGCTGATATTAGGAATTGATGGTTTTCTGATTTTTTTAAAAAGAAAAGAAAACGGTCTTCTTTTGATATAGCTTGAACTACTTTGCTCTTCTTTTAGAGCATTTTGTGTTATTGATTGTTAAATTATTAGTTTTTGTGGTCTTAATTGAGCAATATATTTTTGAGTGTTATAAAATTAGAAAATGGATATGTTTCTTATGGATGCCAAATGGATATTACATATAGACATTTGGTTTGAAACCAATGGGGTCCTTTTATTTGTTATAAAATTTTTCTGTTATCTGATTTAATTAATGGATTCTCTGTGTTTCTTGATATATTGAGGATCTGTCTTATGTGCTATTTACTTCCCATGTTGGTTTTTGATGGACAAGCAATTTTGGAGTACTAGATTTCTACTGTGTGGTTATTTGGAATCCACTTTTTAGATTTTTTTCTTTGTTCATGGAATGAGTCTTATTGTCCCCTTTTTTGTTAATTGTTTTTGGGATGGTAGTGCTGTATGAGATATACTAAGTCTCTAACTGTGAATATCATGTAAAGTGTATTATCTTACTAACCATTATTAAAAGAAGTCGAGCTAAATGAGAATGCAAAAGGTTTTGATTGAGTTTTAGTTGCCTGTAATGGCTAGTTTCTCTGTGCAAATATGATGCTTCTCCTTGATTGATTTTTTTTTTCATTTTTCCATTTTTCCATCAGGCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCGGTATGTTAGTCTTTCTTCTTCTGATAAATGACGGTGAATTAGTATCAGAATTTACTGGGATTTGATAGATTTTATAGGCAAATTGTAATGATACAGACGACTAGTTTTAGACTAGTTTTTGACAGCTTCACCATCGCTCTTTTTATGAGCTTGTAATCACCCCTCCAGCACTCTCCAGGTGCTGCTTTTGATATGAATACAAGATGTTACCTTAATTAAAAAAAGACAGAAACTAGAGTTGACGATTTGAGCTGCTTATTTGTTGTCCGTGATTATCTACAGTTGTAACATCTCATCTGTAATACAAATATCTATGTATGATATGCATGTAAAGTAATATACGGAGTCATCATTCATCAATTAATTGTTATCCTGATTTTACTGATAAAAAGTTTCCGTTCAACCTTGTTGCTTCTGTGTTCATATGATCTCTTTTATTAAGTTGTCCTAGTGCTTCTGAAAACCTATTGGTAGTTGGTGAACTGCTGATCTACATATCATGCCCTTAACCCCTACTTCATAGACTCAACATTTGCATTCAATGTTTACTTAATCTCTTTTATTGAGTCAGTCAATTTTTTCAAGAAACTTTTGATTGTTGGTGCATCTGCCGTTCTACATGCCCTGCATTTACATTCACTCATTTGTAGTCTGGCCAACCAACATTTGCTCTGTTCGACTCATTGCTTGCTACTGTAGAGATTGTAAGCACATTTTGCGTGACTTGTCTTGAGAGTTGATTATTGAATTTCCTCCAAAGTTCAGATAAACACTCTTCTGCCATCCTTCATTCTTTTAGAAAATACTTATCTTGGAAGTTTTTGAAGCTCTCTGTGGCCATCAACGAAAATCTTGAGTTTATGGTGATCCTCCTTCATATGATGTGCGTCTTTTACTAGTTAAGGATTATGCTCACTGTGCCATCTGCCCATTATTGCATCTTTTTTCATGTTCATTGTGCTTTAAATGAATTGTGCATACAAAAATCAATTCGTCTTGATGAATAATCTTTGTTTGCTTTGTTGCAGACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAGGTCTCTTTCTTCATCTCTTACCACATGCACACATCCTTTGTCCCTTTGTATATCTGACCAGCATAATGGTCAAAGAAAACTGTTGTCAGCTTGTACCTTTTCCCCTCGGGGTTCGAGCATCTTTGTGTGAAATAAACTTTAATATAGATTGAGGTAAGGGCACTCAAGGGTGTGGCCTAGTGGTCGATAAAGTGGGTTGCGAACCATGAGGTTACGCGAAAACACACTGTGATTTCTTTCCACATCTTTGCTGGTGGGAGGTAGCAGGTACCCTGTGGAATTAGTCGAGGTGCAGGCAAGCTGATCCGAGTGTCATGGTTGTTTTCTACAGCATACATACAGACTCAGATAGTTGGAAAATTGGAACTCTTCCCTAATGAATTTATAGGTTCTTTTTCTCTTTGCTGGGGCAAACCAATTTCTTCATGGTGGCAAGCTTTTGAGCTTTAATTAAGAAATGATAGAAATCAATAAGTTTTACTCATAGACCAGCCCCTTCCCTTCTCTCTTTTCATCATTCACCTGAATCAGAGATATAGATAGTTTTGGAGATTATATTCTTTTTGACCTTGTAACTTATTTTGTCTTTCTTCAGGTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAGGTAAAAAAAACACAGGTTTGTTGATAGTTACCAGGTGAATATTTATGCTGTGTACTAATTTCTGCTTATCAACTGTGTTTGTTAGGTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAGGTGGATATGAAATTTTGTTTCTGTGTTACGTGATTGTAGTGGCCTATCGAAGTGTTCCCTTTTTTTCCTTTTCTCCATTGTTTTCTTATCCAGGAGGAATGATCTCTTCTATTCAAAATCTGCAGAGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTTGTGAGTTCCTTATTACAATCATGATAAATGAACCTTTCATTTTCAATTTCTTAAACACAACCGTACTGCCTTCCCTCTGATGCCCTTTAAAGTAAAAATATTAGAATAGGAGAGAGAACATAATCTGCATCAGAGCCATCATATATATATATGTGTGTGTGTATTTGTGTGTTCCCTTTGGTAGTTCTTTTAGTTTTCCATGGATAACAGTAGCTGGGAAAAATCCTCCTTTCTTCGCTCCACGAATGAGAGAGAAAGTCAGTTAGAGAGATGGAACCTGCTATACCACTTTGGGGTTGGAGTAGAGATTATGTTCAACAGCTGAATTTCCTAGCGGTTTAGGATTGGTGAATTGACTAAGAATGTGATATACCCCTTTAGGTCGTGGAGGATGTTGCACACCTCTGTGTTGTGAACTGGTGCATGAATGACTCTTAAAGTTACTACTGAGGACAAAAAATCTTGCAGTAAAGTGAACTGTCATTCTCTCTCCTTGTCACCTCCTTTCTCTGATCAACTTCTCTCTCTCTTATTAGTTCTCTATAATCACTTCTCTTGGTCTCATGATTTGTCAACAGAGTTTACTTTTCAATACTTGAGTGTGATATGCTCCATGGCTATGCACTCCCTCTAGTTACTATTTTCATATCCTCTCTTCTGATCCCTATTTCATATCTCAAGTAGTACCTTTAACTGGACCTTAGCAGCTGGACTGGGTCTGGAAGTATTTGGTTGATTCCTTTTTGATGTTCTTTTTGTACAATTTGGTAAGAGTTCTTCCCTTATCCCTGCTTCTGTTTAGGAGGGGACAGTGCCAAATGGTTATTTTATGTAGCTCCTTGTATTCATTACATGTAATCATTTTAACACAATGAAGTACTGCAGGCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTGGTCAGTATCTTCGTATTTTGTTCTCTTTTTCTAGTCAAAGCTTATATGGTTTTATTACATTTTCCGTGTATTCCTCTCTCAGGTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATTATGGATCTTTGGTTCTCAACTTTCATTCTGTAATTTCTGTGCATTTGCTTTCTTTCAACAAAGATAATAGAAGAATGGAGAACAAGA</genome_strand>
        <mrna_strand>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG.....................................................................................GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG.............................................................................................................................AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG..................................................................................GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG....................................................................................................CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATT...............................................................AAAAAAAAAAAAAAAAAAACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316388" ref_strand="+" ref_description="SGN-U316388        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT4G14350.2 | Symbol: None | protein kinase family protein, contains similarity to Swiss-Prot:O13310 serine/threonine-protein kinase orb6 (Schizosaccharomyces pombe) | chr4:8256082-8260571 REVERSE | Aliases: None (evalue: 2e-84, score=279) genbank/nr: gi|62857016|dbj|BAD95893.1| Ser/Thr protein kinase [Lotus corniculatus var. japonicus] (evalue: 2e-88, score=291)">
      <seq>gtggtcacttggtgcgatcatgtatgaaatgctcgtggggtacccaccgttctattctgatgaacctatgtccacctgtagaaagatagtaaattggcggactcatcttaaatttcctgaagaggcaaaactgtctccagaagcaaaagatctcatatgtaaactcttgtgtaatgtggagcagagacttgggaccagaggtgctgatgaaataaaggctcacccatggttcaaaggtgttgaatgggataaactttatcaaatgaaagctgcatttattccagaagttaatggcgagttggatactcagaattttgagaagtttgaagagggcgacaatcaaattccaactgcagcaaaatcaggtccatggaggaagatgctctcctcaaaggatgtcaactttatgggttacacttacaaaaactttgagattgtgaatgataacgatgtttctcaaatgggtacttattctgtccttgcagtagattataatcattcgatttatcttgtttgtctttttcagtttgtgtttgttttgaaatgtttatttctgtttttcagctgaattgaagaagaagagcaacaaagctaagaggcctactgtgaagtcgcttttcagtgaggattcagaagccaccgactctcaacaggctcatggaagtttccttaatcttttacctccacacttggaatcctcaaagcaggctgaacaactatagctacatccaaaactaatctgttaataacttcatgaccatagccaaaccaaagtaaacaggggcagcgccaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72798" stop="68412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72498" g_stop="72414" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71203" g_stop="71072" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="217" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87">
            <donor d_prob="0.497" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70984" g_stop="70871" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="331" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70759" g_stop="70712" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="379" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69938" g_stop="69697" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="621" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68888" g_stop="68712" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="798" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U316388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72498" e_stop="72414"/>
          <exon e_start="71203" e_stop="71072"/>
          <exon e_start="70984" e_stop="70871"/>
          <exon e_start="70759" e_stop="70712"/>
          <exon e_start="69938" e_stop="69697"/>
          <exon e_start="68888" e_stop="68712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAGGTAAGAACTGGAATTTGCTCCTTGGGTCTTCTTAAAAGTCTTTAGTGTTTGCAATCTACTGGTTGTTATCTCTGCCCATTCATACCTCTGGTCTTGTTACTTGTGCCGTAGCTATTTTTTTGTTTGACTTCAACTTTTGGGTTATGTTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATGACCAATTTTAGACTACAGGGAGAGAGGTTCAATCACTATTCAGTGATTGGATCTTGATACCTATATGTTCTTGTTTGACATGCATAGCCATTTCACTGTGACATAGGGGTAAGGTCCAAAAAAATCTGTCACGTTGTCTAAACATGATTATTGCATTTAGCAACATTTGCCCAAGATGACTTCTAAGCGTTCTCTTCGTGCTGATTTTAATCTTGCTCTTCTCACACTTTTCAACCATTGAAATGCCACACTGGATCAGCTCTATTGCATCAATTATAATGTATATAACCTTTGGTGAAAACTTGGAATATTTGCATCAAATATTGTAGCTTTCCAACTTTAAGTTCCATTGTGATTCGTTGTTGTTGACAATTAACTTTTGTCTTGTTACAGATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAGGTACTTGGTGTATTCAATGTGAAATCCCGTGAACACTTAGAATGGGATTGAACTTGGACAAAATTTAATTGGTTAACTGTCCTTCAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAGGTATGCGGGGCGCTGCTCACTCTTTTTTCCCCATCAATGCTACTGTAACCTTTTTGGTGCTATTCTTATTTGCTTGTTTCTCATGTTTTCTTTTGCAAATTTGATTTGCAGGGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAGGTTAGTTCCAATAAACTGCTAGTGAATTCATATTCATAGGTGCATGTTGAAGTGAGGTTAACATTGTCATTCTGCATTTGAATTATCAACTGATAGAGATGATTTTGGAAACTGCTAATGCATTCTGCAATTGAATAATCAGCTGATAAGAACCATTTATATGGTCTTTATTCTAACTTCACTGTGCATATGCAAACTTGAATTTTGGCTAGTTCTCTGGGAGTAGCCATTTGCTTTGTTTACTTATCACAGTCCAAATGCAGTTTGTAGATGACAAATTAGAATTCCTGTTTACTACTTCTCTATGTGACAATTGAGCCGAATTGACAGTGAAATCAAAACAGATATATCTGTTTGTTGAGCTGCTAATGATCATACAGAGGTGCTGGTTTTTTTGTAGATAAATTCTGTACTTTTTTAGAATTAAGTATACGGTTGGTTTTTTGTTTCCAAATCGAAAAAATCCATGTAGTTGAACTACTTCTGAGGCATTGTAAAGGATAATGGGTAAAAGACAGTTGATAGGTAAGATGCTGCCTCCTTTATCAGGAACTAGTTTGGTAATAAATTTGCGTATAGAACTGTTAGTATTGAGTAAGAGGAAAATATGTTTTTTTCCTTCTCGGAAAAAGATAAATAGAAAATGTTTCGTTTTGCTATTTATCATCTGCTAATTTGGTTCATCAACTTCTACTGCTGTTTTCATCATGCTGTCCTTGTAAGATTCCTGTCAGTGTTGAACCCTGTTTTGGCCCTTTTGTTTGTTGTTACAGATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCAGTAGGATATCTGTCTTCCTTTTTAAAATTATCTGGTTTTCATAGTACTACTGTAGACTGGGATTATTACTTCTTTAAACATTGCTCCCTAGAAAAAGAGATGCAATAACTTAGGAACGGTGATAATAGTGCCATTTCTTCACTTGCTCGAGTGGTAGTCATTCTCAGGAAACCTTATCCCAGGAAATGAGTTGCAAACTTATACTGGATTGAAGCATCACTGTCCTTTATGTTTATAGATTTTAAGGAGTTGGAGGTGAAGAGAATTTTTTTGAATTTCCCATCATGGTGGTAATTTGTCGAAGGAAACAGCAGATATCTTTTTTGATGACCGAGAAATCCGTGAAGGACCAACCTTTAGGACTAACCGCAGCCTTTAAAACTCACGGATAATGGGTTCGCCTCTTAAATACCGGGATTAGTTTGCATGGTGCAGGGCTCGAAACTATGACTTATGTCACTAGTCCCTCGACGTTTGCCTCTTGAACTGAGCCCGGAGGCTCGAAACAGTGGATATTACTATCCATTTTTAAGAAAACATCTTCACCTCAGTTCCCAACAAGTTGGGGTCGGCTATATGAATCCTCAGTATCCCATAAGCTCAACTCCTGCCACCAATCTTCTTTCAAGAAAATGATCTGATAATTGGTTGGCGTTTTGTTTCCGATACCTTTACAGCATTTTGTCCATCTGTTTCATTTGTTCTTTCTCGTTTTTCTTCCTACTATTCTTATGCATCATGACAGAGGGTATTTGATATAGTTGGCAAGAAGAAACATGCTAATATATGTACTTTTATATGTTTGTAGGTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCT</genome_strand>
        <mrna_strand>GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG.......................................................................................GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG...............................................................................................................GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343071" ref_strand="+" ref_description="SGN-U343071        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttggagacttcagatattctggtgtttcagttagttagtgttctggtttggggtacaaaacgtctgacctgcttctaattattagattgacgaggatattactaatagaaattcaatagtccgccaataaacttgaactttttacctagataacattcaaagactgctctatgggccatgtctaagttgctaagagacctggaaatgtaattgtttgtctgagcacagtgagcagtttggtatgtgaaggaaacacttgtcggctatttgcttggaatcattataattcattcagtgtctcacttatatggaaaggaccaagaggaagtaatacagttcaacattatcattatgcatttgagtcatgcctatctaagttttatggtgcagaatctcatgctcagttttgttcatccagagtctgagacaccaaatatccttgggcagaagcctatattcgagaaatttattggaattgtagaaactggatgacatgtagccnttgtgtttccactatatatagatggtctatatgtgcatttcaatatttacgaacttaatatctcagcagttcacacaagtcaacctggaatgaatgcattcttatgacatctttctaggcacataagtatctgtataggaaaaacaagttttaaatggatttgctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="72567" stop="71297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72267" g_stop="71597" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U343071" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72267" e_stop="71597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCC-TTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATG</genome_strand>
        <mrna_strand>TTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCNTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315338" ref_strand="+" ref_description="SGN-U315338        Tomato 200607 #1 [33 ESTs aligned] arabidopsis/peptide: AT4G14360.1 | Symbol: None | dehydration-responsive protein-related, similar to early-responsive to dehydration stress ERD3 protein (Arabidopsis thaliana) GI:15320410; contains Pfam profile PF03141: Putative methyltransferase | chr4:8267656-8271107 REVERSE | Aliases: DL3220C, FCAALL.222 (evalue: 0, score=986) genbank/nr: gi|18414198|ref|NP_567427.1| dehydration-induced protein-related [Arabidopsis thaliana] gi|16604605|gb|AAL24095.1| putative ankyrin protein [Arabidopsis thaliana] gi|20259233|gb|AAM14332.1| putative ankyrin protein [Arabidopsis thaliana](evalue: 0, score=986)">
      <seq>gttttccattctctttctctccatcatacacttaactattttcttgtttttcttgacacgtcctattattctcgatttgtaaaacttactcatttctccaatttcagatctgcacctattctgctcaaatactgttatttcaccaatagaagaaatccatcttccttcagaatctaatttctgaaatctgttacgttcgggatcttggagctaactggtccacctaagcaatgacttctaagaattgaaggggaaagggtgaaggtgaagcttttttgaagattctaaaactacacaaatgatgcgagggagatcagatggagcgcagaagaagcgcttgttgacttctgtagctgttgttgcactctttgttgttgtcctgtatttttattttggctctaagagcaacggtgagtctgctttagagtatggaagccgatcattgaggaaactgggatcctcgtatttgggtggagatgatgactctgatcttagcagcaagcaagatgagaagtttgggctggaagatggtgaagatggcatcgtttctaagagcttcccagtttgcgatgatcgacattcggagttaattccctgtctggacaggcatctcatataccaaatgagattgaagctggatctaacattaatggagcactatgaaagacattgtccattgcctgaaagacgtttcaattgcttgattcctcctccagctggatacaaggtaccgattaagtggccaagaagtagagatgaggtttggaaggcaaacataccacatactcaccttgcacatgagaaatctgaccaaaactggatggttgttaagggtgaaaagatcatatttcctggtggaggcactcactttcactatggagctgataagtacattgctttaattgcaaatatgctgaaatttccgaacaataacttgaacaatggaggaaggatacgcacagtttttgacgttggttgtggtgtggctagttttggtggttatcttctatcctctgatatcatagcaatgtcgttggcgccgaatgatgtgcatcagaatcagatccaatttgccttagagagaggaattcctgcatatcttggtgttcttgggacaaaaaggcttccttatccaagcagatcatttgaatttgctcactgttcccgttgtaggatcgattggcttcagagggatggcatccttcttctcgagcttgatagggtgcttagacctggaggctattttgcctattcatctcccgaagcatatgcacaggatgaagaggatctcagaatatggaaacagatgagcacacttgttgaacgcatgtgctggagaatagcagaaaaaaagaaccaaacagtgatttgggtcaagcctctaaacaacgactgttacatggaaagaccagctggtactcaaccaccactttgtcggtccaatgatgatcctgatgctgtttggggtgtgaacatggaagcatgcataacaccttattctgatcatgaccacaaagttggcggaagcgggctggctccttggccagcaaggctatccactcctcctcctcgtcttgctgattttgggtattcaagtgaaatgtttgagaaggacatggagctttggcagcgaagagttgaacattactggaatattttaagttcaaagatttcttcagacacactgagaaatatcatggacatgaaggccaatatggggtcatttgctgctgctttgaaggacaaagatgtttgggtcatgaacgttgtacccaaagatggacctaacactctcaagattgtatatgaccgtggtttgattggcacaactcatgactggtgtgaagcattttcaacatatcctaggacctatgatttgctccatgcatggaatatattctccgacattgaaaagaaaggctgcagtggtgaggatctgttactcgagatagatcgcatagtaaggcctagtggttttgtcatcttccgcgacaaacaacatgttattgactttgtaaagaagtatttatctccgttgcactgggaagcggtagctgatccaacgccagatcaagaccaggaaggggatgagattgttttcatcatccaaaagaagttgtggctcacaagtgaaagcatcagagatacagagtaaatgaagtttgctacactaaagcaccacttcatcttgattcatttttctcctaacttttgagataaattaagaacaacacacctcaaaggtcaaaggagatatcagtttgattttgtagtatttatgatatttatttcttacttttcatcatttaacttaatttccagttgttgtttcttttagtgacaaactcatagactacatattatatgcatttataggctctattcttaaattttggcattagtaaaagcttactttatgcattacatgtaatgtaaaattatgtgttaaacatgttgctgaaatgaagaagattcaaaaagtctcatagaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="90532" stop="66537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90232" g_stop="90100" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88065" g_stop="87637" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="562" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87451" g_stop="87287" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="727" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87163" g_stop="86981" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="910" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86849" g_stop="86255" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="1505" r_length="595" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="85672" g_stop="85560" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1506" r_stop="1618" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="85428" g_stop="85208" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1619" r_stop="1839" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84686" g_stop="84028" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1840" r_stop="2498" r_length="659" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="84027" i_stop="83741" i_length="287">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="83740" g_stop="83727" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="2499" r_stop="2512" r_length="14" r_score="0.786"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U315338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90232" e_stop="90100"/>
          <exon e_start="88065" e_stop="87637"/>
          <exon e_start="87451" e_stop="87287"/>
          <exon e_start="87163" e_stop="86981"/>
          <exon e_start="86849" e_stop="86255"/>
          <exon e_start="85672" e_stop="85560"/>
          <exon e_start="85428" e_stop="85208"/>
          <exon e_start="84686" e_stop="84028"/>
          <exon e_start="83740" e_stop="83727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACTGTAAGATTCTTTTTTTTTTTGTGGATCTGATTGATTTCGTGCTTACCTTTTTCTACTTGTTAATTGGTTTCACTCGGCAAAGTTTTTTTGTTCTAACGTTAAAGACGCGTTTAATGGTAGTGCTTGTTGATTTGTGTTAATAATTATAATATTTTTTTAAATATTCAATGATTTTGTCTGTACAATTTTTAATTCTACAAACATTTTGTGTTTAATCTCTATTATTTGCCTATCCATTCAGAGTTGTAATCTTTTTTCGAATCCTCGCCATTTTGCTTGTTAATTCAAATCTGTTTGCTCTTGGACCCTTTAGTTACTGTTTAATCTTGTTGATTTGTATTAGTAATCTGTGAGTTTTTTGTTAATATTGAATATGGCTTACCCATTTGCTCTCTTTTGCTTCTTAATTGTTATAAGCTAGTTAAAAGTTTTAATATTTTGCTCTAATGTTTTATAGCCCCTTTTAAGACTACTACTTAATCTTGTTTTTGCTTGATATTGAATCTGGCTTATCCATTTTGGCCTTTTTTTTTTATTGTTAATCCTACCTAGCTAAAGTTTTAATCTTTTGCTATGATGTTTTAGATCCTTTAATGACTAGTGTTTAATCTTGTTGATTTATATTAACATGTTTGTTTTTAACATTGAGTCTAGCTTACTCATTTTTGGCCTTTTGTGCTTGTTAATCATGCTCAGCTAGCCAAAGTTGTAATCTTTTGCTCTAATTTTTGTACATGCCTTTGCTTAGTCTTGTTGATTTGTATCAACAATCATGTTTTTTTTTTTTTAATATTGGATCTGGCTTGTCCAAGACATTTGCGTTTGAGCTGGTTAATTATCCATCTAGGCCAAAATTTGTTCTTTGGTTCGGTTGTTTGTACTCATTAATGTTACTAGTTGATCTTGTTAATTTGAGTTAGTAGTAATTATGGGTCGTTTAATGGATCATGTTGGATTCTACTTATCCTTTGCCATTTTTATGCTTGGTTTTTTAAAATTCTCAGCTAGGGTAATATCTGTTTTCTGCTTTTGTTGTTCGACCTATTAATGCTAATAGGGCCTAGACTTGTTTATTTGTATTAGTAATCCTGGATTCTTAATTGCATCAACCCAGATCCGTGTTTCAGAAAGTTTAATTATCCTTATACCTGTCATCAGTATAAGCACATTATTGCTTTGATATCCAAGGATAAAAGTTGAATTCCATTGGTCTTCACAATTAGTCCAAATGTTTGTATGCATCGGGATCTTGTTCATAGTTGAGATACTTCTCAGCTGTAGATATGGGAAGTTCCGTTGTGAATTTGCATTTTTTTAATATAGTAAATAGCATCTAAACTCTCTTTTTTCAGTCGTTTTACGAAAAATAGAATGTGAGGCAGTGGAAGACACTGCCGACAATGTAGCCTGAAATGTAAATGATATACCAGCAGTTAGCCAACTCTGTTTCTGGAATTTCACTTGACATTGTCTTCCTCTTCCAGTTCCATTTTTCCTTCTGAATGCATCACTTAGTACACTATAAGTGTGATTTGTTGCCTATTACTTTTTTTTTTTTTTGGGGGGGGGATGTGGTTCTTTAGTAATCCGTTAAAAATAAGTACTGGTTTGATCTTTCTTATCATCTATATGTTGCTCCGTCTCATTCCCTAACTGGCTAGAGAAGTAGACATACCTATCGTCTAATTTCAAGGAGTAATACCCAAGTTGGAGTATCATATCCGAGCTTGAGCCAGGAAAATTTCGTGGAGTTCAATATGACTTCAAAGATTGTTTCTGAGATCATGAAATTGTACAAGAAATATAGTAGAAGTTTAATTTACATGTTCTTTTCAAAGAAATATAGTAGTGAATGCAAGATTGCAATATCTACTGCGGTTGGACGTTTATAATGCTTTTTCTTTTTAATTTTTTGGATTCTTTTTTGAAATATCTCGGTGGCTTTTCTTTCTTTTTCTTTTTCTTTTTATTTTTTGTTTGCCCTTTGCCACACTACTCGAGTTGATCTAGTTGTTTGTGCATGTGATTTTGCAGGTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCAGTGAGTATTATTTTTCCTTTTATATTGTTCTTTTTCGTTTTGTTGATAGATGATGTCACAATCACTCTCATTTAACTAACCTGTGAGACTGCATCGCTATATGGAAGACCGGGAAAACACTTGCTGCATTTTGGTTGTCTTGTTAACTTTCTAACTTTTGTTCTACTATTTTTGTCTCTTTAAAGGTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAGGTGCATAAGCTATATCAGTACTAAATATAAGTCAAGAATATGCTCTAACTTCCAATGTTATTCGTTTTTTTTTTCTGATCAGACACATCTGTTTTTGCTTTCGCCCCTTGGATGTTGTTGTAGGTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAATGTGAGCACTCTATCTCTTGAAATATTGCAGATCTATCGATAGAAAGAAATATGTAACCAGGCTTAGTTAAATAATCAACTCTTAAGATGTTCACACTTCTCAAAGTTGTCTTACCGTAATCGTGATCGCAGATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATCGTAAGTGTCCTGTCTCTTGCTTATTTTCATTATTGAGCATCGGTGACGGTGAGTATACCTGTGTAAAGCAGTAAAAATGGCAGATAGAAGTGTTTTGTACCTGGTCAACTAAGCAATAGTAACTCATAACAAAAATAATGTTAATTTTGCGAACCCAACTTCAGAATCAGATAGAATTTAACACCAAAAGTAGTAGAGTTTCCGGAAGGCTTTCTCGAACAATGCATAGTATACTGAGAAAGTCCACTCGTCAAAGCACCTAATCATGAATCAAAAGTTATAGTTTTGAGTGTACAATGTCATGTACACTAAACAATGTATAGCTCTTCCTGGATTGTTCAATCTTGTAAGTGGATTTTCGTGCGTATATGCTAAGATTATGTTTGGAGCTTTTTATGGAGTGTTTACATCTGATATTGTTCCATTAGTTTTGTGATACAATAGGCATAAGCAGAAGTTCTAATTTTGTTTTTATCAAAGAAAATAAGTCATAGATTTGCTGAAGCTAGTAAACAATGCTAATGTTAGTTCTGTTTCATTTTCCTCAAAACGTATAACCTTATTCTCATTTTTTGATATCAGATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATGGTAATTTTATGATCTTATTTTTTCGACTTCTGCCATATCATTCCATATGTGAGATTAAAGTGGTCAGGTGAATCGTGAGAATGGAAAGGAAAAGCTTATTATACTTCTTGCTTTTGTTGGCTTATTCGCAGGAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTGGTACGTAAATAATTTCTTACTTCACAGAACTACGTAGATTTCTCCCGTCTATCTTATAGGCATCAATCTAGCATCCTTCACATAATCGACCTTGTGAGATTCTCTTAATAGGTATATTAACCGACAGCAATGATGAAATTAAAACCTGCTTAAATATCAATAATCTGAAGTTAAAATGTATATTACCGTTTTAATTTGCTCGAACTCTTCAAAAATTCCGACATGTGCGTGTCAGATCCTCCAAAAGTAGTGCACATTTGGAGGATGTTGACACGTTGCAGCAACATTTTTGGTAAATTCTCTCAACATAAGTCCTTGAGCCGAGGGTCTATTAGAAACTGCCTCTCTACCTCTGAGGTAGGAGTAAGGTCTGCGTACACTCTACCCTCCTAGACCCCACTTTTTGGGACTACTCGGAATATGTTCTTGTTGTTATCCATAAGAAGAATGCAGACATTTAGAATCTCGGAACCAGAGCTGGCCCTCGGAAATCTTACTTCCTTGCACATCGTTGAGTGCAGGTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTGGCAAATATTTTTACTTGAGATATGTTCCCAATTAACTTTTTTTTAGTTAATCCCTATTAGAGGTACTTAAAAACTGTTAAAACCTTTCGGGCTAGCTCAGTGGTCTGGGCTCGGGATTTTCACGTTAGAGGTCTCAAGTTTAAAAGTCCTTGCCAGCAAGCAATTGGTTTGCCATCAGGATCGAACTCGTCGTACTGAGCTTGTCTGGTGTGAGTTTTTATTGCATAGAAGTAAAGAGTTTTATCCTGTTTAACACTCGAAGGATAGCGAATGCGAATTTTTCTTAGAAATTAAAAAAGAA</genome_strand>
        <mrna_strand>GTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA.........................................................................................................................................................................................GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG...........................................................................................................................GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT...................................................................................................................................ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG...................................................................................................................................GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAAAAAAAA...............................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="99021" stop="99798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99321" g_stop="99497" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99321" e_stop="99497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="100502" stop="101813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100802" g_stop="101513" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100802" e_stop="101513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAACTCCTTATTTCTGACACATAAGTAGGTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGT-ATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="+" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>tgtagtctatgcacattcaaaaactgccgatctttacaacaaaaccggagcaccccaaggagatgcacttggtctaatgaagcctttgttcaataactcttgaagttgtgcctttaactctcttaactctgcgggagccattctataagggggtataaaaatggggcgtgtgcccggttcgagatcaatacagaagtcaatatccctatccggtggcataccaggatgatctgcagggaacacatccataaactcacgaactactgaaactgagtcaatcgaaggtacttgggtagtgttatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatacgcaccggattggaagtgtagtcaccctcctacactaacagatctgtcccaggcttggctaacgtcacggttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcgaagtcaaccatttcttgcaaggattttgccgtagccgctacctgtaacgctgaaatccgcaactctgacctcaaccctttcacaaaacgacgaatcctctcttgtggactgaaacaaagttgagtggcatatctggatagtgcacgaaacttagcctcatatgcattgacctacatcctaccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="101109" stop="102373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101373" g_stop="102073" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101373" e_stop="102073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTAGTGGCATACCAAGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACGATTCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCCGAAATCCGTAGTTCTAACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTAGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGC</genome_strand>
        <mrna_strand>TGTAGTCTATGCACATTCAAAAACT-GC--CGATCTT--T-AC-AACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGTATAAAAATGGGGCGTGTGCCCGGTTCGAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGATGATCTGCAGGGAACACATCCATAAACTCACGAACTACTGAAACTGAGTCAATCGAAGGTACTTGGGTAGTGTTATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCTACACTAACAGATCTGTCCCAGGCTTGGCTAACGTCACGGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTTGCAAGGATTTTGCCGTAGCCGCTACCTGTAACGCTGAAATCCGCAACTCTGACCTCAACCCTTTCACAAAACGACGAATCCTCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCTACATCCTACCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="102999" stop="101846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102699" g_stop="102146" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102699" e_stop="102146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGACCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAATTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="+" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="102034" stop="103067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102334" g_stop="102766" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="+" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102334" e_stop="102766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0007I05-moZA7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0007I05.1" temp_strand="-" temp_description="C09HBa0007I05.1  AC234211.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0007I05 upload_account_name:spain (1 - 111343)">
        <position start="103358" stop="102473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103058" g_stop="102773" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0007I05.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0007I05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103058" e_stop="102773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTTTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2918" PGL_stop="7685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2918" e_stop="3439"/>
            <exon e_start="6270" e_stop="6506"/>
            <exon e_start="7064" e_stop="7190"/>
            <exon e_start="7310" e_stop="7685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.910" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.772" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="2918" e_stop="3439" e_length="522"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.910">
            <gDNA_intron_boundary i_start="3440" i_stop="6269" i_length="2830"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6270" e_stop="6506" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6507" i_stop="7063" i_length="557"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7064" e_stop="7190" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.772">
            <gDNA_intron_boundary i_start="7191" i_stop="7309" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="7310" e_stop="7685" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2918" stop="3439"/>
              <exon start="6270" stop="6506"/>
              <exon start="7064" stop="7190"/>
              <exon start="7310" stop="7685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATAATAGTATTTTATTTTTCATTAGAGATTTCAATTCGAATATCTTTGTTATAGAGGTTTTATAATTTTTAATATGAAATTTTTAAATTTAATCGTTTTAAATATGAATACGAGACACCGAATAAAAGAAAAGGGAAAGAAGGAAATGGGTCCCTTAGCTTTTTTATTCAACACAAAACTAGAAAAATGTAGATTTGTTACTACAACTACACCACCAATCAAACTCCACAAAAGATCGATCCTTTTTTCTGAAATTCAAGCTCAACCATGGCTTCTCTACTTCATTCGAGACTTCCCCTTTCTCACAATCATTCTTTATCAAATTCTTGCCAATCTTTCCCATGTCATCTCCCAGGAAGAAGCAAGAGAAGTACTCAAAGATTATTAGAGGAAAGGAGCTATGACAGCAAGAGAAGTTTAGTTTGCCAGTCGGGTATTGATGAAGTCACTTTTATTGAGCCACCTGGTAGTAAAGAAGCTGAAGCGGAGCTTATTGGGTCTCTCAAACTCAAGTTATTG : AGTGCTGTTTCTGGGCTAAACAGAGGTCTTGCTGCAAGTGAAGATGATCTAAAGAAGGCGGATGAGGCTGCCAAGGAGCTAGAATCTTGTGCAGGAGCTGTAGATCTCGCAGCTGATCTTGATAAACTTCAAGGGAGGTGGAAATTGATATACAGCAGTGCATTCTCATCTCGTACTCTTGGTGGAAGTCGTCCTGGACCCCCCACTGGAAGACTTCTTCCCATCACTCTTGGTCAG : GTATTTCAAAGAATCGATGTACTGAGCAAAGATTTTGACAACATAGTGGAGCTTGAATTAGGTGCTCCGTGGCCTTTCCCGCCTGTTGAAGCAACTGCCACTTTAGCCCACAAATTTGAACTTATAG : GATCATCTACGATTAAGATTATATTCGAGAAAACTACAGTGAAGACAACTGGAAATTTATCACAGCTCCCACCATTAGAAGTGCCTCGCATACCAGATCAGTTCAGGCCACCATCAAATACAGGAAGTGGTGAGTTTGAAGTTACCTACATCGATTCTGATACACGAGTAACAAGGGGAGACAGAGGAGAGCTTAGAGTTTTCGTTATCTCATAAGTTAAGCTGCAATGAATATAGTCTTCCTACAATGTTTTGTTGCTACAATTTCATGTAACAACATATCAAATGTGTAGATATGCTCAACATTATTCTGCTGGTCACAGCTATCAAATCTGTAATGCTACTGCAAATTCAAATCTGTATACAGTAAATTTGAC</gDNA_template>
            <first_frame> Y  I  I  V  F  Y  F  S  L  E  I  S  I  R  I  S  L  L  *  R  F  Y  N  F  *  Y  E  I  F  K  F  N  R  F  K  Y  E  Y  E  T  P  N  K  R  K  G  K  E  G  N  G  S  L  S  F  F  I  Q  H  K  T  R  K  M  *  I  C  Y  Y  N  Y  T  T  N  Q  T  P  Q  K  I  D  P  F  F  *  N  S  S  S  T  M  A  S  L  L  H  S  R  L  P  L  S  H  N  H  S  L  S  N  S  C  Q  S  F  P  C  H  L  P  G  R  S  K  R  S  T  Q  R  L  L  E  E  R  S  Y  D  S  K  R  S  L  V  C  Q  S  G  I  D  E  V  T  F  I  E  P  P  G  S  K  E  A  E  A  E  L  I  G  S  L  K  L  K  L  L  :  S  A  V  S  G  L  N  R  G  L  A  A  S  E  D  D  L  K  K  A  D  E  A  A  K  E  L  E  S  C  A  G  A  V  D  L  A  A  D  L  D  K  L  Q  G  R  W  K  L  I  Y  S  S  A  F  S  S  R  T  L  G  G  S  R  P  G  P  P  T  G  R  L  L  P  I  T  L  G  Q  :  V  F  Q  R  I  D  V  L  S  K  D  F  D  N  I  V  E  L  E  L  G  A  P  W  P  F  P  P  V  E  A  T  A  T  L  A  H  K  F  E  L  I   : G  S  S  T  I  K  I  I  F  E  K  T  T  V  K  T  T  G  N  L  S  Q  L  P  P  L  E  V  P  R  I  P  D  Q  F  R  P  P  S  N  T  G  S  G  E  F  E  V  T  Y  I  D  S  D  T  R  V  T  R  G  D  R  G  E  L  R  V  F  V  I  S  *  V  K  L  Q  *  I  *  S  S  Y  N  V  L  L  L  Q  F  H  V  T  T  Y  Q  M  C  R  Y  A  Q  H  Y  S  A  G  H  S  Y  Q  I  C  N  A  T  A  N  S  N  L  Y  T  V  N  L   </first_frame>
            <second_frame>  I  *  *  Y  F  I  F  H  *  R  F  Q  F  E  Y  L  C  Y  R  G  F  I  I  F  N  M  K  F  L  N  L  I  V  L  N  M  N  T  R  H  R  I  K  E  K  G  K  K  E  M  G  P  L  A  F  L  F  N  T  K  L  E  K  C  R  F  V  T  T  T  T  P  P  I  K  L  H  K  R  S  I  L  F  S  E  I  Q  A  Q  P  W  L  L  Y  F  I  R  D  F  P  F  L  T  I  I  L  Y  Q  I  L  A  N  L  S  H  V  I  S  Q  E  E  A  R  E  V  L  K  D  Y  *  R  K  G  A  M  T  A  R  E  V  *  F  A  S  R  V  L  M  K  S  L  L  L  S  H  L  V  V  K  K  L  K  R  S  L  L  G  L  S  N  S  S  Y  * :   V  L  F  L  G  *  T  E  V  L  L  Q  V  K  M  I  *  R  R  R  M  R  L  P  R  S  *  N  L  V  Q  E  L  *  I  S  Q  L  I  L  I  N  F  K  G  G  G  N  *  Y  T  A  V  H  S  H  L  V  L  L  V  E  V  V  L  D  P  P  L  E  D  F  F  P  S  L  L  V  R :   Y  F  K  E  S  M  Y  *  A  K  I  L  T  T  *  W  S  L  N  *  V  L  R  G  L  S  R  L  L  K  Q  L  P  L  *  P  T  N  L  N  L  *  :  D  H  L  R  L  R  L  Y  S  R  K  L  Q  *  R  Q  L  E  I  Y  H  S  S  H  H  *  K  C  L  A  Y  Q  I  S  S  G  H  H  Q  I  Q  E  V  V  S  L  K  L  P  T  S  I  L  I  H  E  *  Q  G  E  T  E  E  S  L  E  F  S  L  S  H  K  L  S  C  N  E  Y  S  L  P  T  M  F  C  C  Y  N  F  M  *  Q  H  I  K  C  V  D  M  L  N  I  I  L  L  V  T  A  I  K  S  V  M  L  L  Q  I  Q  I  C  I  Q  *  I  *  </second_frame>
            <third_frame>   Y  N  S  I  L  F  F  I  R  D  F  N  S  N  I  F  V  I  E  V  L  *  F  L  I  *  N  F  *  I  *  S  F  *  I  *  I  R  D  T  E  *  K  K  R  E  R  R  K  W  V  P  *  L  F  Y  S  T  Q  N  *  K  N  V  D  L  L  L  Q  L  H  H  Q  S  N  S  T  K  D  R  S  F  F  L  K  F  K  L  N  H  G  F  S  T  S  F  E  T  S  P  F  S  Q  S  F  F  I  K  F  L  P  I  F  P  M  S  S  P  R  K  K  Q  E  K  Y  S  K  I  I  R  G  K  E  L  *  Q  Q  E  K  F  S  L  P  V  G  Y  *  *  S  H  F  Y  *  A  T  W  *  *  R  S  *  S  G  A  Y  W  V  S  Q  T  Q  V  I   : E  C  C  F  W  A  K  Q  R  S  C  C  K  *  R  *  S  K  E  G  G  *  G  C  Q  G  A  R  I  L  C  R  S  C  R  S  R  S  *  S  *  *  T  S  R  E  V  E  I  D  I  Q  Q  C  I  L  I  S  Y  S  W  W  K  S  S  W  T  P  H  W  K  T  S  S  H  H  S  W  S   : G  I  S  K  N  R  C  T  E  Q  R  F  *  Q  H  S  G  A  *  I  R  C  S  V  A  F  P  A  C  *  S  N  C  H  F  S  P  Q  I  *  T  Y  R :   I  I  Y  D  *  D  Y  I  R  E  N  Y  S  E  D  N  W  K  F  I  T  A  P  T  I  R  S  A  S  H  T  R  S  V  Q  A  T  I  K  Y  R  K  W  *  V  *  S  Y  L  H  R  F  *  Y  T  S  N  K  G  R  Q  R  R  A  *  S  F  R  Y  L  I  S  *  A  A  M  N  I  V  F  L  Q  C  F  V  A  T  I  S  C  N  N  I  S  N  V  *  I  C  S  T  L  F  C  W  S  Q  L  S  N  L  *  C  Y  C  K  F  K  S  V  Y  S  K  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3173" stop="3439"/>
                    <exon start="6270" stop="6506"/>
                    <exon start="7064" stop="7190"/>
                    <exon start="7310" stop="7524"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSTMASLLHSRLPLSHNHSLSNSCQSFPCHLPGRSKRSTQRLLEERSYDSKRSLVCQSGIDEVTFIEPPGSKEAEAELIGSLKLKLLSAVSGLNRGLAASEDDLKKADEAAKELESCAGAVDLAADLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELELGAPWPFPPVEATATLAHKFELIGSSTIKIIFEKTTVKTTGNLSQLPPLEVPRIPDQFRPPSNTGSGEFEVTYIDSDTRVTRGDRGELRVFVIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12400" PGL_stop="13042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12400" e_stop="13042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12400" e_stop="13042" e_length="643"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12400" stop="13042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341011" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGATGAAGGAGATACAGAGAATCCCCCCGTCGATGAGGAGGTGCAGAAGGAGGTCATTGAGGAAAAAACAATATATTCTGATCTGCTTGATCAAGATATGAGTTGTTTGAGAACAGATCCTGATCATTTCATTGATTTATTGAAGGACAGTGATGTTTGTATGGGTGCAGCCCCTTCTAGGCAAGCGCTTATTCAAAACATTTTCACACTCTGTGGCAATTATAGAGAGCTTTCTCAGCATAGTGTAAGCCCAGTGCCTGCACAGAAGAATTTGGAAGATATTGATTCTTCAGTACCCACAGTTAAGACAATTGGAGAGGATTATGCATCTGCGTGTGCTGCAGAAGGTTTGTCCAATGAACTTTTGCCATTATGCAATCCCGAGACCATAAAAAAGTCACCAGTTAATCAGACAAGAATGTTCAAGAGCTCTTGTGACAAAGAAAATGATTCAAAGGAGAACTTCAACCCTACTTGTGGCAATCTTGAAGTCCACGTGAAATGGGAAGCTGCATCAAAAGAGAATCCTAGTGTAGCAACCACAGTAAAGGTTGGCAAAGATTCATCCTTAGCTGATCTGCGCAAACAGATTGAGCTACACCTCGGTGCAGACAATCCATTCACTTTCCTTACAATAGGG</gDNA_template>
            <first_frame> *  *  *  R  R  Y  R  E  S  P  R  R  *  G  G  A  E  G  G  H  *  G  K  N  N  I  F  *  S  A  *  S  R  Y  E  L  F  E  N  R  S  *  S  F  H  *  F  I  E  G  Q  *  C  L  Y  G  C  S  P  F  *  A  S  A  Y  S  K  H  F  H  T  L  W  Q  L  *  R  A  F  S  A  *  C  K  P  S  A  C  T  E  E  F  G  R  Y  *  F  F  S  T  H  S  *  D  N  W  R  G  L  C  I  C  V  C  C  R  R  F  V  Q  *  T  F  A  I  M  Q  S  R  D  H  K  K  V  T  S  *  S  D  K  N  V  Q  E  L  L  *  Q  R  K  *  F  K  G  E  L  Q  P  Y  L  W  Q  S  *  S  P  R  E  M  G  S  C  I  K  R  E  S  *  C  S  N  H  S  K  G  W  Q  R  F  I  L  S  *  S  A  Q  T  D  *  A  T  P  R  C  R  Q  S  I  H  F  P  Y  N  R  </first_frame>
            <second_frame>  D  D  E  G  D  T  E  N  P  P  V  D  E  E  V  Q  K  E  V  I  E  E  K  T  I  Y  S  D  L  L  D  Q  D  M  S  C  L  R  T  D  P  D  H  F  I  D  L  L  K  D  S  D  V  C  M  G  A  A  P  S  R  Q  A  L  I  Q  N  I  F  T  L  C  G  N  Y  R  E  L  S  Q  H  S  V  S  P  V  P  A  Q  K  N  L  E  D  I  D  S  S  V  P  T  V  K  T  I  G  E  D  Y  A  S  A  C  A  A  E  G  L  S  N  E  L  L  P  L  C  N  P  E  T  I  K  K  S  P  V  N  Q  T  R  M  F  K  S  S  C  D  K  E  N  D  S  K  E  N  F  N  P  T  C  G  N  L  E  V  H  V  K  W  E  A  A  S  K  E  N  P  S  V  A  T  T  V  K  V  G  K  D  S  S  L  A  D  L  R  K  Q  I  E  L  H  L  G  A  D  N  P  F  T  F  L  T  I  G </second_frame>
            <third_frame>   M  M  K  E  I  Q  R  I  P  P  S  M  R  R  C  R  R  R  S  L  R  K  K  Q  Y  I  L  I  C  L  I  K  I  *  V  V  *  E  Q  I  L  I  I  S  L  I  Y  *  R  T  V  M  F  V  W  V  Q  P  L  L  G  K  R  L  F  K  T  F  S  H  S  V  A  I  I  E  S  F  L  S  I  V  *  A  Q  C  L  H  R  R  I  W  K  I  L  I  L  Q  Y  P  Q  L  R  Q  L  E  R  I  M  H  L  R  V  L  Q  K  V  C  P  M  N  F  C  H  Y  A  I  P  R  P  *  K  S  H  Q  L  I  R  Q  E  C  S  R  A  L  V  T  K  K  M  I  Q  R  R  T  S  T  L  L  V  A  I  L  K  S  T  *  N  G  K  L  H  Q  K  R  I  L  V  *  Q  P  Q  *  R  L  A  K  I  H  P  *  L  I  C  A  N  R  L  S  Y  T  S  V  Q  T  I  H  S  L  S  L  Q  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12401" stop="13042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDEGDTENPPVDEEVQKEVIEEKTIYSDLLDQDMSCLRTDPDHFIDLLKDSDVCMGAAPSRQALIQNIFTLCGNYRELSQHSVSPVPAQKNLEDIDSSVPTVKTIGEDYASACAAEGLSNELLPLCNPETIKKSPVNQTRMFKSSCDKENDSKENFNPTCGNLEVHVKWEAASKENPSVATTVKVGKDSSLADLRKQIELHLGADNPFTFLTIG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26336" PGL_stop="24046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26336" e_stop="26222"/>
            <exon e_start="24933" e_stop="24046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.805" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26336" e_stop="26222" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.805" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26221" i_stop="24934" i_length="1288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24933" e_stop="24046" e_length="888"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26336" stop="26222"/>
              <exon start="24933" stop="24046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTAGAAGATGGTGTTCTTCAGTGAATGGTAAGGGTGAAATTTCACAGCCGTTGAAGAAATCAGAAGTGATGGTGCAACTGAAAGACAGAGATGTGGAGATAGCTGAAAAGAA : GCATATGACTGAAAATGAAGAGGTCTTTCCTAGAGAAACACGTGTCCAGAAGGAAGTAGATTCGTGGAATAGTTTGGTAGCGACCTTTCAAATAACTAAAAAGAAGATATTTAGAAATATTTTGGAGCAGAAGAGCAGTAGCACTCATTCATTAACTTCCACTTCTGATCTTAAGGATTCTGATAATGTTGTATCTGCTCATAGTCATGATAGTGGAAGTATGAATAATCTTAAGAGTACAATTCGTTCAGAAAAGACGTCTATAACTAATATGGAAGAAAATGTTGACAGTAAAACATCTCTGTCTTCTTTTATAGCCGTTGAGATTGTTAATATGAAAAACACTTCAAATACAGTTGAGACTGAGGAATCGCGAAATATCTCGTCAAAAGAATGTGAAGGAAGCACTGACTACGGGGTAAATGACATGTCTTCCGGTGCATCATCTATCTGCAGGAAAGCCGATTCCAACGACGGTGTTCAACTGATTAATGATTTCCATCATTCAGAGTTCGTTAAGAAAGAGAGAGAACAATTGCTAGCTGAGGAAGCATCATCAAGTTTACAAATCAGTTCTGGCGAAGAGATCCTGTCAAAATCTGAGGACGCACGTATCGTAGAACATCGGATGCAAATTGAGATACCTAGGACATCACATAGAATTTCTGCAAATAAATCTGGTTCAACTGCATCTGAAAGCCAGGAGGACATTATGAAGAAGTTCAAATTTTCGTCGAATCAGATTGTTGCCCCAAAGAGCGAAAAATCTGTACCTAGAGAGTTTGAGCACCTTCATGAAACTTCTCAGAATACTTTCGGCAAGAGTGGCGACATAAAGGGCTTAATAGAATGTATTAGGGTGCTCCCTCCTCAGAATCATTCTGTTGT</gDNA_template>
            <first_frame> N  V  E  D  G  V  L  Q  *  M  V  R  V  K  F  H  S  R  *  R  N  Q  K  *  W  C  N  *  K  T  E  M  W  R  *  L  K  R   : S  I  *  L  K  M  K  R  S  F  L  E  K  H  V  S  R  R  K  *  I  R  G  I  V  W  *  R  P  F  K  *  L  K  R  R  Y  L  E  I  F  W  S  R  R  A  V  A  L  I  H  *  L  P  L  L  I  L  R  I  L  I  M  L  Y  L  L  I  V  M  I  V  E  V  *  I  I  L  R  V  Q  F  V  Q  K  R  R  L  *  L  I  W  K  K  M  L  T  V  K  H  L  C  L  L  L  *  P  L  R  L  L  I  *  K  T  L  Q  I  Q  L  R  L  R  N  R  E  I  S  R  Q  K  N  V  K  E  A  L  T  T  G  *  M  T  C  L  P  V  H  H  L  S  A  G  K  P  I  P  T  T  V  F  N  *  L  M  I  S  I  I  Q  S  S  L  R  K  R  E  N  N  C  *  L  R  K  H  H  Q  V  Y  K  S  V  L  A  K  R  S  C  Q  N  L  R  T  H  V  S  *  N  I  G  C  K  L  R  Y  L  G  H  H  I  E  F  L  Q  I  N  L  V  Q  L  H  L  K  A  R  R  T  L  *  R  S  S  N  F  R  R  I  R  L  L  P  Q  R  A  K  N  L  Y  L  E  S  L  S  T  F  M  K  L  L  R  I  L  S  A  R  V  A  T  *  R  A  *  *  N  V  L  G  C  S  L  L  R  I  I  L  L  </first_frame>
            <second_frame>  M  *  K  M  V  F  F  S  E  W  *  G  *  N  F  T  A  V  E  E  I  R  S  D  G  A  T  E  R  Q  R  C  G  D  S  *  K  E  :  A  Y  D  *  K  *  R  G  L  S  *  R  N  T  C  P  E  G  S  R  F  V  E  *  F  G  S  D  L  S  N  N  *  K  E  D  I  *  K  Y  F  G  A  E  E  Q  *  H  S  F  I  N  F  H  F  *  S  *  G  F  *  *  C  C  I  C  S  *  S  *  *  W  K  Y  E  *  S  *  E  Y  N  S  F  R  K  D  V  Y  N  *  Y  G  R  K  C  *  Q  *  N  I  S  V  F  F  Y  S  R  *  D  C  *  Y  E  K  H  F  K  Y  S  *  D  *  G  I  A  K  Y  L  V  K  R  M  *  R  K  H  *  L  R  G  K  *  H  V  F  R  C  I  I  Y  L  Q  E  S  R  F  Q  R  R  C  S  T  D  *  *  F  P  S  F  R  V  R  *  E  R  E  R  T  I  A  S  *  G  S  I  I  K  F  T  N  Q  F  W  R  R  D  P  V  K  I  *  G  R  T  Y  R  R  T  S  D  A  N  *  D  T  *  D  I  T  *  N  F  C  K  *  I  W  F  N  C  I  *  K  P  G  G  H  Y  E  E  V  Q  I  F  V  E  S  D  C  C  P  K  E  R  K  I  C  T  *  R  V  *  A  P  S  *  N  F  S  E  Y  F  R  Q  E  W  R  H  K  G  L  N  R  M  Y  *  G  A  P  S  S  E  S  F  C  C </second_frame>
            <third_frame>   C  R  R  W  C  S  S  V  N  G  K  G  E  I  S  Q  P  L  K  K  S  E  V  M  V  Q  L  K  D  R  D  V  E  I  A  E  K  K :   H  M  T  E  N  E  E  V  F  P  R  E  T  R  V  Q  K  E  V  D  S  W  N  S  L  V  A  T  F  Q  I  T  K  K  K  I  F  R  N  I  L  E  Q  K  S  S  S  T  H  S  L  T  S  T  S  D  L  K  D  S  D  N  V  V  S  A  H  S  H  D  S  G  S  M  N  N  L  K  S  T  I  R  S  E  K  T  S  I  T  N  M  E  E  N  V  D  S  K  T  S  L  S  S  F  I  A  V  E  I  V  N  M  K  N  T  S  N  T  V  E  T  E  E  S  R  N  I  S  S  K  E  C  E  G  S  T  D  Y  G  V  N  D  M  S  S  G  A  S  S  I  C  R  K  A  D  S  N  D  G  V  Q  L  I  N  D  F  H  H  S  E  F  V  K  K  E  R  E  Q  L  L  A  E  E  A  S  S  S  L  Q  I  S  S  G  E  E  I  L  S  K  S  E  D  A  R  I  V  E  H  R  M  Q  I  E  I  P  R  T  S  H  R  I  S  A  N  K  S  G  S  T  A  S  E  S  Q  E  D  I  M  K  K  F  K  F  S  S  N  Q  I  V  A  P  K  S  E  K  S  V  P  R  E  F  E  H  L  H  E  T  S  Q  N  T  F  G  K  S  G  D  I  K  G  L  I  E  C  I  R  V  L  P  P  Q  N  H  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26334" stop="26222"/>
                    <exon start="24933" stop="24048"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRRWCSSVNGKGEISQPLKKSEVMVQLKDRDVEIAEKKHMTENEEVFPRETRVQKEVDSWNSLVATFQITKKKIFRNILEQKSSSTHSLTSTSDLKDSDNVVSAHSHDSGSMNNLKSTIRSEKTSITNMEENVDSKTSLSSFIAVEIVNMKNTSNTVETEESRNISSKECEGSTDYGVNDMSSGASSICRKADSNDGVQLINDFHHSEFVKKEREQLLAEEASSSLQISSGEEILSKSEDARIVEHRMQIEIPRTSHRISANKSGSTASESQEDIMKKFKFSSNQIVAPKSEKSVPREFEHLHETSQNTFGKSGDIKGLIECIRVLPPQNHSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37227" PGL_stop="36547"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37227" e_stop="36704"/>
            <exon e_start="36552" e_stop="36547"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.987"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="37227" e_stop="36704" e_length="524"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36703" i_stop="36553" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="36552" e_stop="36547" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37227" stop="36704"/>
              <exon start="36552" stop="36547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCATACTAATAAGCTAGACAAAGCTTCCTCACATAATATGACTGATGAGTCTTTTGTAGTACCTTTTAGGTCAATGTCATTGACTGACGTTGGACCAGATGGTAGAACTGCCATTAACATGGACTCTGAGCTTCCATTGGCGCATCAAAAATCAGAAAACAGCTCTGCTGGGATTATGAGTTACGAGCCTAATGATTTTAGCTTGATGTCTGAGCGTGGAACAGAAAAAAGGTTGGGTCTCTATGACCCTGCTTTAGACTATGAAATGCAAGTTTGCAATGAAGGTTCTGCTTCAAAGGATAAAAGAAAGAATGGAGTCTCCAATGATGTTAAGGAAGGTTCAAAAAAATCAGAGAAAGATCGCAGGTCAAAAGCTACTGTTGATACTTCGGACAAGAAAAGGAGTGGAGGACCAATAAGAAAAGGAAAAATGTCAAAGTCAAGTCCTTTGGATGATGCACGAGCACGTGCTGAGAGGATAAGATCCTTCAAAGCTGATATGCAGAAGATGAAAAAAGAAAAG : GAAGAG</gDNA_template>
            <first_frame> S  I  L  I  S  *  T  K  L  P  H  I  I  *  L  M  S  L  L  *  Y  L  L  G  Q  C  H  *  L  T  L  D  Q  M  V  E  L  P  L  T  W  T  L  S  F  H  W  R  I  K  N  Q  K  T  A  L  L  G  L  *  V  T  S  L  M  I  L  A  *  C  L  S  V  E  Q  K  K  G  W  V  S  M  T  L  L  *  T  M  K  C  K  F  A  M  K  V  L  L  Q  R  I  K  E  R  M  E  S  P  M  M  L  R  K  V  Q  K  N  Q  R  K  I  A  G  Q  K  L  L  L  I  L  R  T  R  K  G  V  E  D  Q  *  E  K  E  K  C  Q  S  Q  V  L  W  M  M  H  E  H  V  L  R  G  *  D  P  S  K  L  I  C  R  R  *  K  K  K  R :   K   </first_frame>
            <second_frame>  A  Y  *  *  A  R  Q  S  F  L  T  *  Y  D  *  *  V  F  C  S  T  F  *  V  N  V  I  D  *  R  W  T  R  W  *  N  C  H  *  H  G  L  *  A  S  I  G  A  S  K  I  R  K  Q  L  C  W  D  Y  E  L  R  A  *  *  F  *  L  D  V  *  A  W  N  R  K  K  V  G  S  L  *  P  C  F  R  L  *  N  A  S  L  Q  *  R  F  C  F  K  G  *  K  K  E  W  S  L  Q  *  C  *  G  R  F  K  K  I  R  E  R  S  Q  V  K  S  Y  C  *  Y  F  G  Q  E  K  E  W  R  T  N  K  K  R  K  N  V  K  V  K  S  F  G  *  C  T  S  T  C  *  E  D  K  I  L  Q  S  *  Y  A  E  D  E  K  R  K   : G  R  </second_frame>
            <third_frame>   H  T  N  K  L  D  K  A  S  S  H  N  M  T  D  E  S  F  V  V  P  F  R  S  M  S  L  T  D  V  G  P  D  G  R  T  A  I  N  M  D  S  E  L  P  L  A  H  Q  K  S  E  N  S  S  A  G  I  M  S  Y  E  P  N  D  F  S  L  M  S  E  R  G  T  E  K  R  L  G  L  Y  D  P  A  L  D  Y  E  M  Q  V  C  N  E  G  S  A  S  K  D  K  R  K  N  G  V  S  N  D  V  K  E  G  S  K  K  S  E  K  D  R  R  S  K  A  T  V  D  T  S  D  K  K  R  S  G  G  P  I  R  K  G  K  M  S  K  S  S  P  L  D  D  A  R  A  R  A  E  R  I  R  S  F  K  A  D  M  Q  K  M  K  K  E  K  :  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37225" stop="36704"/>
                    <exon start="36552" stop="36547"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTNKLDKASSHNMTDESFVVPFRSMSLTDVGPDGRTAINMDSELPLAHQKSENSSAGIMSYEPNDFSLMSERGTEKRLGLYDPALDYEMQVCNEGSASKDKRKNGVSNDVKEGSKKSEKDRRSKATVDTSDKKRSGGPIRKGKMSKSSPLDDARARAERIRSFKADMQKMKKEKEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40632" PGL_stop="39099"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40632" e_stop="40546"/>
            <exon e_start="40463" e_stop="40424"/>
            <exon e_start="40049" e_stop="39997"/>
            <exon e_start="39919" e_stop="39873"/>
            <exon e_start="39207" e_stop="39099"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.931"/>
          <exon-intron don_prob="0.980" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="40632" e_stop="40546" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40545" i_stop="40464" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40463" e_stop="40424" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.835">
            <gDNA_intron_boundary i_start="40423" i_stop="40050" i_length="374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40049" e_stop="39997" e_length="53"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39996" i_stop="39920" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39919" e_stop="39873" e_length="47"/>
          </exon>
          <intron i_serial="4" don_prob="0.842" acc_prob="0.897">
            <gDNA_intron_boundary i_start="39872" i_stop="39208" i_length="665"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39207" e_stop="39099" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40632" stop="40546"/>
              <exon start="40463" stop="40424"/>
              <exon start="40049" stop="39997"/>
              <exon start="39919" stop="39873"/>
              <exon start="39207" stop="39099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGGTATACACCATTGAATCTGAGATCTTGCAGATTGAGGAAGCAATAGCCCTTCAAGGAAACAATGATAGTGGGCAGGGGCCA : GCTGAATACAAAGAAGCTAAACCAGCAGGAAACATTGCAG : GTACTAAATCTACAGCAGATGTCAATGAGGAGAAAGCTATTGTTCTTTACAAG : CCGGGGGAAGATCAACCTCAAACAGATTTGCAGGAAGAAAATTCAAG : AGTACAGTTTCTGAAGGTCCTGGAGACTCGCAAGTCTGTGCTTCAAAAAGAACAAGGAATGGCATTTGCTCGTGCTGTAGCTGCTGGTTTTGATATTGATCGTATGACA</gDNA_template>
            <first_frame> E  R  V  Y  T  I  E  S  E  I  L  Q  I  E  E  A  I  A  L  Q  G  N  N  D  S  G  Q  G  P  :  A  E  Y  K  E  A  K  P  A  G  N  I  A   : G  T  K  S  T  A  D  V  N  E  E  K  A  I  V  L  Y  K  :  P  G  E  D  Q  P  Q  T  D  L  Q  E  E  N  S  R :   V  Q  F  L  K  V  L  E  T  R  K  S  V  L  Q  K  E  Q  G  M  A  F  A  R  A  V  A  A  G  F  D  I  D  R  M  T </first_frame>
            <second_frame>  K  G  Y  T  P  L  N  L  R  S  C  R  L  R  K  Q  *  P  F  K  E  T  M  I  V  G  R  G  Q :   L  N  T  K  K  L  N  Q  Q  E  T  L  Q  :  V  L  N  L  Q  Q  M  S  M  R  R  K  L  L  F  F  T  S :   R  G  K  I  N  L  K  Q  I  C  R  K  K  I  Q   : E  Y  S  F  *  R  S  W  R  L  A  S  L  C  F  K  K  N  K  E  W  H  L  L  V  L  *  L  L  V  L  I  L  I  V  *   </second_frame>
            <third_frame>   K  G  I  H  H  *  I  *  D  L  A  D  *  G  S  N  S  P  S  R  K  Q  *  *  W  A  G  A   : S  *  I  Q  R  S  *  T  S  R  K  H  C  R :   Y  *  I  Y  S  R  C  Q  *  G  E  S  Y  C  S  L  Q   : A  G  G  R  S  T  S  N  R  F  A  G  R  K  F  K  :  S  T  V  S  E  G  P  G  D  S  Q  V  C  A  S  K  R  T  R  N  G  I  C  S  C  C  S  C  W  F  *  Y  *  S  Y  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40632" stop="40546"/>
                    <exon start="40463" stop="40424"/>
                    <exon start="40049" stop="39997"/>
                    <exon start="39919" stop="39873"/>
                    <exon start="39207" stop="39099"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERVYTIESEILQIEEAIALQGNNDSGQGPAEYKEAKPAGNIAGTKSTADVNEEKAIVLYKPGEDQPQTDLQEENSRVQFLKVLETRKSVLQKEQGMAFARAVAAGFDIDRMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="53369" PGL_stop="52585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53369" e_stop="53109"/>
            <exon e_start="52999" e_stop="52585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53369" e_stop="53109" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.911">
            <gDNA_intron_boundary i_start="53108" i_stop="53000" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="52999" e_stop="52585" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53369" stop="53109"/>
              <exon start="52999" stop="52585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53201" stop="53109"/>
              <exon start="52999" stop="52605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339262" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGGCTGTAATGGGAAGCAGCCGGCCCAGCTCATCTGGCGAACCCACTGACAATCGCTCTGGTCGCTTAGGTTCAAGCAGCGGCCGCATTTCCACTACCCAAAGAGTACAACCTGGATTTGAATCCAAGTCTTCATCTTTTACCCGCGCTACTGCAACTAGAGGGGGTAGGGATGATGCTCTTAGGAGCTTTGAGTTACTAACTATTGGCACCGGAAGAAGGAAATGAGGCTATATAATGTCTAATATCTACCCCCAAG : TTGAACAGCAAGTTGAGCAGCTATCTTCAAGGACTTATCAACAAGCATGCACTGATTCTTGCAATTTAACAAACTTGCTAAACTTTCAAGAGATAGAGGGGTGTTTCTGTTTTGTATATTTGAGAATACCTCTCTAATGTGATGTTGTAGACCGGGATCTCTCTCGAAAAATAAAAAATATTTCACATCTGGCCATTGCTCCCCTGATGTGCATGGCTGCTATGCTTGCGAACGGGGAGGATGTTAATGGCGAAAGTAAATAGCTCATGGTTATGCAGTGTAGCTCCGATTACTTAAGGGGCTACCTCAGTACTTCCTCTTAGTTGTGTGGTTCTTGTGCCCAGAATTGTTATCATATACTTTTATGTTATGTACCCTCTAATTTTTCTTCCTATATTAACTTGTTACTATGAAC</gDNA_template>
            <first_frame> G  G  L  *  W  E  A  A  G  P  A  H  L  A  N  P  L  T  I  A  L  V  A  *  V  Q  A  A  A  A  F  P  L  P  K  E  Y  N  L  D  L  N  P  S  L  H  L  L  P  A  L  L  Q  L  E  G  V  G  M  M  L  L  G  A  L  S  Y  *  L  L  A  P  E  E  G  N  E  A  I  *  C  L  I  S  T  P  K  :  L  N  S  K  L  S  S  Y  L  Q  G  L  I  N  K  H  A  L  I  L  A  I  *  Q  T  C  *  T  F  K  R  *  R  G  V  S  V  L  Y  I  *  E  Y  L  S  N  V  M  L  *  T  G  I  S  L  E  K  *  K  I  F  H  I  W  P  L  L  P  *  C  A  W  L  L  C  L  R  T  G  R  M  L  M  A  K  V  N  S  S  W  L  C  S  V  A  P  I  T  *  G  A  T  S  V  L  P  L  S  C  V  V  L  V  P  R  I  V  I  I  Y  F  Y  V  M  Y  P  L  I  F  L  P  I  L  T  C  Y  Y  E  </first_frame>
            <second_frame>  E  G  C  N  G  K  Q  P  A  Q  L  I  W  R  T  H  *  Q  S  L  W  S  L  R  F  K  Q  R  P  H  F  H  Y  P  K  S  T  T  W  I  *  I  Q  V  F  I  F  Y  P  R  Y  C  N  *  R  G  *  G  *  C  S  *  E  L  *  V  T  N  Y  W  H  R  K  K  E  M  R  L  Y  N  V  *  Y  L  P  P  S :   *  T  A  S  *  A  A  I  F  K  D  L  S  T  S  M  H  *  F  L  Q  F  N  K  L  A  K  L  S  R  D  R  G  V  F  L  F  C  I  F  E  N  T  S  L  M  *  C  C  R  P  G  S  L  S  K  N  K  K  Y  F  T  S  G  H  C  S  P  D  V  H  G  C  Y  A  C  E  R  G  G  C  *  W  R  K  *  I  A  H  G  Y  A  V  *  L  R  L  L  K  G  L  P  Q  Y  F  L  L  V  V  W  F  L  C  P  E  L  L  S  Y  T  F  M  L  C  T  L  *  F  F  F  L  Y  *  L  V  T  M  N </second_frame>
            <third_frame>   R  A  V  M  G  S  S  R  P  S  S  S  G  E  P  T  D  N  R  S  G  R  L  G  S  S  S  G  R  I  S  T  T  Q  R  V  Q  P  G  F  E  S  K  S  S  S  F  T  R  A  T  A  T  R  G  G  R  D  D  A  L  R  S  F  E  L  L  T  I  G  T  G  R  R  K  *  G  Y  I  M  S  N  I  Y  P  Q   : V  E  Q  Q  V  E  Q  L  S  S  R  T  Y  Q  Q  A  C  T  D  S  C  N  L  T  N  L  L  N  F  Q  E  I  E  G  C  F  C  F  V  Y  L  R  I  P  L  *  C  D  V  V  D  R  D  L  S  R  K  I  K  N  I  S  H  L  A  I  A  P  L  M  C  M  A  A  M  L  A  N  G  E  D  V  N  G  E  S  K  *  L  M  V  M  Q  C  S  S  D  Y  L  R  G  Y  L  S  T  S  S  *  L  C  G  S  C  A  Q  N  C  Y  H  I  L  L  C  Y  V  P  S  N  F  S  S  Y  I  N  L  L  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53367" stop="53140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RAVMGSSRPSSSGEPTDNRSGRLGSSSGRISTTQRVQPGFESKSSSFTRATATRGGRDDALRSFELLTIGTGRRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="65423" PGL_stop="62301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65423" e_stop="65394"/>
            <exon e_start="64789" e_stop="64720"/>
            <exon e_start="64620" e_stop="64472"/>
            <exon e_start="64395" e_stop="64300"/>
            <exon e_start="63206" e_stop="63136"/>
            <exon e_start="62495" e_stop="62434"/>
            <exon e_start="62357" e_stop="62301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="0.967"/>
          <exon-intron don_prob="0.967" acc_prob="0.995" e_score="0.914"/>
          <exon-intron don_prob="0.581" acc_prob="0.965" e_score="0.946"/>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="0.958"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="0.887"/>
          <exon-intron don_prob="0.995" acc_prob="0.987" e_score="0.887"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="65423" e_stop="65394" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="65393" i_stop="64790" i_length="604"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="64789" e_stop="64720" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64719" i_stop="64621" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="64620" e_stop="64472" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.581" acc_prob="0.965">
            <gDNA_intron_boundary i_start="64471" i_stop="64396" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="64395" e_stop="64300" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64299" i_stop="63207" i_length="1093"/>
          </intron>
          <exon e_serial="5" e_score="0.887">
            <gDNA_exon_boundary e_start="63206" e_stop="63136" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="63135" i_stop="62496" i_length="640"/>
          </intron>
          <exon e_serial="6" e_score="0.887">
            <gDNA_exon_boundary e_start="62495" e_stop="62434" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62433" i_stop="62358" i_length="76"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="62357" e_stop="62301" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65423" stop="65394"/>
              <exon start="64789" stop="64720"/>
              <exon start="64620" stop="64472"/>
              <exon start="64395" stop="64300"/>
              <exon start="63206" stop="63136"/>
              <exon start="62495" stop="62434"/>
              <exon start="62357" stop="62301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337137" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTGAAGAAGAAGTTGCTGTGAAGCTG : GAATCAACTAAAACAGAACACCCTCACCTTCATTATGAATCAAAGTTGTATAGGCTTCTACAAGGAGGAA : CTGGGATTCCAAACGTCAGGTGGTTTGGCGTTGAAGGTGAATACAATGCCATGGTTATTGACCTTCTTGGGCCAAGTTTGGAAGACTTGTTTAACTATTGCAATAGGAGGTTCACTTTAAAGACAGTTTTAATGCTGGCAGATCAATTG : ATTAATAGGGTTGAATAAATGCACTCAAGAGGATTTCTTCACCGTGACATTAAGCCCGAAAACTTCTTAATGGGTATAGGGCGTAAAGCAAATCAG : GTATACATGATTGACTATGCTCTTGCCAACAAATACAGAGATCATGAGACACATGAGCATATACCATTCAG : GGAAAACAAAAGGCCCACAGGAACAGCTCGTTATTCTAGTGTTAGCACCCATCTTGGATTTG : AACAAAGCAGAAGAGACGATCTGGAGTGTCTTGGTTATGTGCTTATGTATTTTTTGA</gDNA_template>
            <first_frame> Q  T  E  E  E  V  A  V  K  L  :  E  S  T  K  T  E  H  P  H  L  H  Y  E  S  K  L  Y  R  L  L  Q  G  G   : T  G  I  P  N  V  R  W  F  G  V  E  G  E  Y  N  A  M  V  I  D  L  L  G  P  S  L  E  D  L  F  N  Y  C  N  R  R  F  T  L  K  T  V  L  M  L  A  D  Q  L  :  I  N  R  V  E  *  M  H  S  R  G  F  L  H  R  D  I  K  P  E  N  F  L  M  G  I  G  R  K  A  N  Q  :  V  Y  M  I  D  Y  A  L  A  N  K  Y  R  D  H  E  T  H  E  H  I  P  F  R :   E  N  K  R  P  T  G  T  A  R  Y  S  S  V  S  T  H  L  G  F   : E  Q  S  R  R  D  D  L  E  C  L  G  Y  V  L  M  Y  F  L  </first_frame>
            <second_frame>  K  L  K  K  K  L  L  *  S  W :   N  Q  L  K  Q  N  T  L  T  F  I  M  N  Q  S  C  I  G  F  Y  K  E  E  :  L  G  F  Q  T  S  G  G  L  A  L  K  V  N  T  M  P  W  L  L  T  F  L  G  Q  V  W  K  T  C  L  T  I  A  I  G  G  S  L  *  R  Q  F  *  C  W  Q  I  N  * :   L  I  G  L  N  K  C  T  Q  E  D  F  F  T  V  T  L  S  P  K  T  S  *  W  V  *  G  V  K  Q  I  R :   Y  T  *  L  T  M  L  L  P  T  N  T  E  I  M  R  H  M  S  I  Y  H  S   : G  K  T  K  G  P  Q  E  Q  L  V  I  L  V  L  A  P  I  L  D  L  :  N  K  A  E  E  T  I  W  S  V  L  V  M  C  L  C  I  F  * </second_frame>
            <third_frame>   N  *  R  R  S  C  C  E  A   : G  I  N  *  N  R  T  P  S  P  S  L  *  I  K  V  V  *  A  S  T  R  R  N :   W  D  S  K  R  Q  V  V  W  R  *  R  *  I  Q  C  H  G  Y  *  P  S  W  A  K  F  G  R  L  V  *  L  L  Q  *  E  V  H  F  K  D  S  F  N  A  G  R  S  I   : D  *  *  G  *  I  N  A  L  K  R  I  S  S  P  *  H  *  A  R  K  L  L  N  G  Y  R  A  *  S  K  S   : G  I  H  D  *  L  C  S  C  Q  Q  I  Q  R  S  *  D  T  *  A  Y  T  I  Q  :  G  K  Q  K  A  H  R  N  S  S  L  F  *  C  *  H  P  S  W  I  * :   T  K  Q  K  R  R  S  G  V  S  W  L  C  A  Y  V  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64377" stop="64300"/>
                    <exon start="63206" stop="63136"/>
                    <exon start="62495" stop="62434"/>
                    <exon start="62357" stop="62302"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHSRGFLHRDIKPENFLMGIGRKANQVYMIDYALANKYRDHETHEHIPFRENKRPTGTARYSSVSTHLGFEQSRRDDLECLGYVLMYFL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65423" stop="65394"/>
                    <exon start="64789" stop="64720"/>
                    <exon start="64620" stop="64472"/>
                    <exon start="64395" stop="64378"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTEEEVAVKLESTKTEHPHLHYESKLYRLLQGGTGIPNVRWFGVEGEYNAMVIDLLGPSLEDLFNYCNRRFTLKTVLMLADQLINRVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65398" stop="65394"/>
                    <exon start="64789" stop="64720"/>
                    <exon start="64620" stop="64501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWNQLKQNTLTFIMNQSCIGFYKEELGFQTSGGLALKVNTMPWLLTFLGQVWKTCLTIAIGGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="77774" PGL_stop="68312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77774" e_stop="77409"/>
            <exon e_start="76478" e_stop="76100"/>
            <exon e_start="75071" e_stop="74897"/>
            <exon e_start="74301" e_stop="74218"/>
            <exon e_start="74132" e_stop="73891"/>
            <exon e_start="73765" e_stop="73546"/>
            <exon e_start="72660" e_stop="72581"/>
            <exon e_start="72498" e_stop="72414"/>
            <exon e_start="71203" e_stop="71072"/>
            <exon e_start="70984" e_stop="70871"/>
            <exon e_start="70759" e_stop="70712"/>
            <exon e_start="69938" e_stop="69854"/>
            <exon e_start="69753" e_stop="69697"/>
            <exon e_start="68888" e_stop="68399"/>
            <exon e_start="68335" e_stop="68312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.782" e_score="1.000"/>
          <exon-only e_score="0.583"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77774" e_stop="77409" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.921">
            <gDNA_intron_boundary i_start="77408" i_stop="76479" i_length="930"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76478" e_stop="76100" e_length="379"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76099" i_stop="75072" i_length="1028"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75071" e_stop="74897" e_length="175"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74896" i_stop="74302" i_length="595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74301" e_stop="74218" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74217" i_stop="74133" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74132" e_stop="73891" e_length="242"/>
          </exon>
          <intron i_serial="5" don_prob="0.680" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73890" i_stop="73766" i_length="125"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73765" e_stop="73546" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.820">
            <gDNA_intron_boundary i_start="73545" i_stop="72661" i_length="885"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72660" e_stop="72581" e_length="80"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72580" i_stop="72499" i_length="82"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72498" e_stop="72414" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71072" e_length="132"/>
          </exon>
          <intron i_serial="9" don_prob="0.497" acc_prob="0.953">
            <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="70984" e_stop="70871" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.827" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="70759" e_stop="70712" e_length="48"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="69938" e_stop="69854" e_length="85"/>
          </exon>
          <intron i_serial="12" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69853" i_stop="69754" i_length="100"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="69753" e_stop="69697" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="68888" e_stop="68399" e_length="490"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.782">
            <gDNA_intron_boundary i_start="68398" i_stop="68336" i_length="63"/>
          </intron>
          <exon e_serial="15" e_score="0.583">
            <gDNA_exon_boundary e_start="68335" e_stop="68312" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77774" stop="77409"/>
              <exon start="76478" stop="76100"/>
              <exon start="75071" stop="74897"/>
              <exon start="74301" stop="74218"/>
              <exon start="74132" stop="73891"/>
              <exon start="73765" stop="73546"/>
              <exon start="72660" stop="72581"/>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69854"/>
              <exon start="69753" stop="69697"/>
              <exon start="68888" stop="68399"/>
              <exon start="68335" stop="68312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316387" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATTAGAAAAGAGGACAAAGCTCTTTCCTTTCTCTCTCTCTCCCTCTCACACATTGTTGTGTGTTTCCATGGTGAATTGATGCCACCAAAGCACAAAGTGGTCATCCCCACTCCCACACAACTCTTCTTCTTCAACTAACACAACATCTTTCTCACTTTTTTGTTTTCCCTCTTTTTCATCTTTAGGGTTTTCCTTTTTATTTTTTTTATTTTTTCAACCATTCACAATTCAACTGTGTTTTACCAACAACCCAACTTATCTGATTTCACTTGGTAAACCAAATATTTATCTTTTGTCCATTTTGGGTTTTGTTGATTTGGCACAGAGCAAGCAGAATTAGGCATTCTTGAATCATTTTTTGAG : GCAGAGCATTCAAAAATTGGTTCCTTATGGTGTTCCAAAGTTCGCTTTATAATTGATTACTAGAATACTTGTTGTCGAAGGAAGAAAAAGTTGCTCTTGCAGAGTTCTATCTCTTGTGATTATTTCTCCTATCTTTAGTAAGTTGACTAAGGTGGAGGATGGAGTCTGCCAAACGATGGTTCTGTAAGCTTGGCAAGAAAGATAAGCCTAAGCCTCCCAAGAAGCAGGAAACTACTAGTAATGGGAAAGAAGGGTCGAAATTGTCGCCTCATGAGGAAGCACCTTCAACTGCCACTAAACAGAAAGTTGCAGCTGCCAAGCAGTACATAGAAAAACACTACAAGGAACAAATGAAGAGCTTGCAGGAGCGTAGAGAGCG : ACGCAATATGCTTGAAAAAAAATTAGCTGATGCTGAGGTTTCCGAGGAAGAGCAGAGCAATTTACTGAAGTACCTTGAGAAAAAGGAGACAGAATTTATGCGCATTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCTCTGACAATGATTGGAAAGGGTGCATTTGGGGAG : GTTAGAATATGCAGGGAGAAGGCAACTAGTCATGTCTATGCCATGAAAAAGCTAAAGAAGTCAGAAATGCTTCGTAGAGGCCAG : GTTGAACATGTTAAAGCCGAAAGGAATCTGCTTGCTGAAGTGGAGAGCAATTGCATTGTTAAGCTATATTGCTCCTTCCAAGATGAGGAGTATCTTTACCTAATAATGGAATATCTTCCTGGTGGAGATATGATGACTTTGCTGATGCGCAAGGATACTTTAACAGAAGATGAGGCCAGGTTTTATGTGGGGGAGACCGTCCTTGCTATAGAATCTATCCATAAACACAATTATATTCACAG : AGATATCAAGCCTGATAACTTACTACTTGATAAACATGGACACATGAAGTTATCAGATTTTGGATTGTGTAAACCGCTGGACTGCAGTAATCTTCAGGAAAAGGATTTCACAGCGGCAAATAAGTTAAGTGGCGCTCTTCTAAGCGATGGACGCCCAGCCCCTCCAAGGCGCACTCAACAGGAGCAACTATTGCATTGGCAGAAGAATAGGAGGATGCTT : GCTTATTCCACTGTTGGGACACCTGATTACATTGCTCCAGAGGTTTTATTGAAGAAAGGATATGGATGTGAATGTGATTG : GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGG : CTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCTCGTCAAGTCAATAGCTTTCGTTGTTGTGTTTTTATAACCTAGGTGTATTCCAAGTGTAAGTAAAGTATTCACGACGAAGGCAGTTTTGCAAATTCTGGTGCAACTGCCTTGGTTCATAGTTTGCGCTTGTTTTGTGTAAATTGTTTCTTGGAAGTACATATATCATTCTTTTTGTTGCTAGTTTGTAATTTTGCTTACTCACTAAGCTGCAGAAACTTGTGACCTTGTTCTTGTAATCTCTTTCAACTTTGGGTTTATTTATTTCAATAGCCCTATTCTCTATAGATGAATGTTCTTGCTGGTTTTTTCTATT : ATAATAGAAGAATGGAGAACAAGA</gDNA_template>
            <first_frame> S  I  R  K  E  D  K  A  L  S  F  L  S  L  S  L  S  H  I  V  V  C  F  H  G  E  L  M  P  P  K  H  K  V  V  I  P  T  P  T  Q  L  F  F  F  N  *  H  N  I  F  L  T  F  L  F  S  L  F  F  I  F  R  V  F  L  F  I  F  F  I  F  S  T  I  H  N  S  T  V  F  Y  Q  Q  P  N  L  S  D  F  T  W  *  T  K  Y  L  S  F  V  H  F  G  F  C  *  F  G  T  E  Q  A  E  L  G  I  L  E  S  F  F  E  :  A  E  H  S  K  I  G  S  L  W  C  S  K  V  R  F  I  I  D  Y  *  N  T  C  C  R  R  K  K  K  L  L  L  Q  S  S  I  S  C  D  Y  F  S  Y  L  *  *  V  D  *  G  G  G  W  S  L  P  N  D  G  S  V  S  L  A  R  K  I  S  L  S  L  P  R  S  R  K  L  L  V  M  G  K  K  G  R  N  C  R  L  M  R  K  H  L  Q  L  P  L  N  R  K  L  Q  L  P  S  S  T  *  K  N  T  T  R  N  K  *  R  A  C  R  S  V  E  S   : D  A  I  C  L  K  K  N  *  L  M  L  R  F  P  R  K  S  R  A  I  Y  *  S  T  L  R  K  R  R  Q  N  L  C  A  F  K  G  I  K  W  V  L  M  I  L  S  L  *  Q  *  L  E  R  V  H  L  G  R :   L  E  Y  A  G  R  R  Q  L  V  M  S  M  P  *  K  S  *  R  S  Q  K  C  F  V  E  A  R :   L  N  M  L  K  P  K  G  I  C  L  L  K  W  R  A  I  A  L  L  S  Y  I  A  P  S  K  M  R  S  I  F  T  *  *  W  N  I  F  L  V  E  I  *  *  L  C  *  C  A  R  I  L  *  Q  K  M  R  P  G  F  M  W  G  R  P  S  L  L  *  N  L  S  I  N  T  I  I  F  T   : E  I  S  S  L  I  T  Y  Y  L  I  N  M  D  T  *  S  Y  Q  I  L  D  C  V  N  R  W  T  A  V  I  F  R  K  R  I  S  Q  R  Q  I  S  *  V  A  L  F  *  A  M  D  A  Q  P  L  Q  G  A  L  N  R  S  N  Y  C  I  G  R  R  I  G  G  C  L :   L  I  P  L  L  G  H  L  I  T  L  L  Q  R  F  Y  *  R  K  D  M  D  V  N  V  I   : G  G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  :  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P  R  Q  V  N  S  F  R  C  C  V  F  I  T  *  V  Y  S  K  C  K  *  S  I  H  D  E  G  S  F  A  N  S  G  A  T  A  L  V  H  S  L  R  L  F  C  V  N  C  F  L  E  V  H  I  S  F  F  L  L  L  V  C  N  F  A  Y  S  L  S  C  R  N  L  *  P  C  S  C  N  L  F  Q  L  W  V  Y  L  F  Q  *  P  Y  S  L  *  M  N  V  L  A  G  F  F  Y   : Y  N  R  R  M  E  N  K  </first_frame>
            <second_frame>  Q  L  E  K  R  T  K  L  F  P  F  S  L  S  P  S  H  T  L  L  C  V  S  M  V  N  *  C  H  Q  S  T  K  W  S  S  P  L  P  H  N  S  S  S  S  T  N  T  T  S  F  S  L  F  C  F  P  S  F  S  S  L  G  F  S  F  L  F  F  L  F  F  Q  P  F  T  I  Q  L  C  F  T  N  N  P  T  Y  L  I  S  L  G  K  P  N  I  Y  L  L  S  I  L  G  F  V  D  L  A  Q  S  K  Q  N  *  A  F  L  N  H  F  L  R :   Q  S  I  Q  K  L  V  P  Y  G  V  P  K  F  A  L  *  L  I  T  R  I  L  V  V  E  G  R  K  S  C  S  C  R  V  L  S  L  V  I  I  S  P  I  F  S  K  L  T  K  V  E  D  G  V  C  Q  T  M  V  L  *  A  W  Q  E  R  *  A  *  A  S  Q  E  A  G  N  Y  *  *  W  E  R  R  V  E  I  V  A  S  *  G  S  T  F  N  C  H  *  T  E  S  C  S  C  Q  A  V  H  R  K  T  L  Q  G  T  N  E  E  L  A  G  A  *  R  A  :  T  Q  Y  A  *  K  K  I  S  *  C  *  G  F  R  G  R  A  E  Q  F  T  E  V  P  *  E  K  G  D  R  I  Y  A  H  S  K  A  *  N  G  C  *  *  F  *  A  S  D  N  D  W  K  G  C  I  W  G   : G  *  N  M  Q  G  E  G  N  *  S  C  L  C  H  E  K  A  K  E  V  R  N  A  S  *  R  P   : G  *  T  C  *  S  R  K  E  S  A  C  *  S  G  E  Q  L  H  C  *  A  I  L  L  L  P  R  *  G  V  S  L  P  N  N  G  I  S  S  W  W  R  Y  D  D  F  A  D  A  Q  G  Y  F  N  R  R  *  G  Q  V  L  C  G  G  D  R  P  C  Y  R  I  Y  P  *  T  Q  L  Y  S  Q  :  R  Y  Q  A  *  *  L  T  T  *  *  T  W  T  H  E  V  I  R  F  W  I  V  *  T  A  G  L  Q  *  S  S  G  K  G  F  H  S  G  K  *  V  K  W  R  S  S  K  R  W  T  P  S  P  S  K  A  H  S  T  G  A  T  I  A  L  A  E  E  *  E  D  A   : C  L  F  H  C  W  D  T  *  L  H  C  S  R  G  F  I  E  E  R  I  W  M  *  M  *  L  :  V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G :   *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P  L  V  K  S  I  A  F  V  V  V  F  L  *  P  R  C  I  P  S  V  S  K  V  F  T  T  K  A  V  L  Q  I  L  V  Q  L  P  W  F  I  V  C  A  C  F  V  *  I  V  S  W  K  Y  I  Y  H  S  F  C  C  *  F  V  I  L  L  T  H  *  A  A  E  T  C  D  L  V  L  V  I  S  F  N  F  G  F  I  Y  F  N  S  P  I  L  Y  R  *  M  F  L  L  V  F  S  I  :  I  I  E  E  W  R  T  R </second_frame>
            <third_frame>   N  *  K  R  G  Q  S  S  F  L  S  L  S  L  P  L  T  H  C  C  V  F  P  W  *  I  D  A  T  K  A  Q  S  G  H  P  H  S  H  T  T  L  L  L  Q  L  T  Q  H  L  S  H  F  F  V  F  P  L  F  H  L  *  G  F  P  F  Y  F  F  Y  F  F  N  H  S  Q  F  N  C  V  L  P  T  T  Q  L  I  *  F  H  L  V  N  Q  I  F  I  F  C  P  F  W  V  L  L  I  W  H  R  A  S  R  I  R  H  S  *  I  I  F  *   : G  R  A  F  K  N  W  F  L  M  V  F  Q  S  S  L  Y  N  *  L  L  E  Y  L  L  S  K  E  E  K  V  A  L  A  E  F  Y  L  L  *  L  F  L  L  S  L  V  S  *  L  R  W  R  M  E  S  A  K  R  W  F  C  K  L  G  K  K  D  K  P  K  P  P  K  K  Q  E  T  T  S  N  G  K  E  G  S  K  L  S  P  H  E  E  A  P  S  T  A  T  K  Q  K  V  A  A  A  K  Q  Y  I  E  K  H  Y  K  E  Q  M  K  S  L  Q  E  R  R  E  R :   R  N  M  L  E  K  K  L  A  D  A  E  V  S  E  E  E  Q  S  N  L  L  K  Y  L  E  K  K  E  T  E  F  M  R  I  Q  R  H  K  M  G  A  D  D  F  E  P  L  T  M  I  G  K  G  A  F  G  E  :  V  R  I  C  R  E  K  A  T  S  H  V  Y  A  M  K  K  L  K  K  S  E  M  L  R  R  G  Q  :  V  E  H  V  K  A  E  R  N  L  L  A  E  V  E  S  N  C  I  V  K  L  Y  C  S  F  Q  D  E  E  Y  L  Y  L  I  M  E  Y  L  P  G  G  D  M  M  T  L  L  M  R  K  D  T  L  T  E  D  E  A  R  F  Y  V  G  E  T  V  L  A  I  E  S  I  H  K  H  N  Y  I  H  R :   D  I  K  P  D  N  L  L  L  D  K  H  G  H  M  K  L  S  D  F  G  L  C  K  P  L  D  C  S  N  L  Q  E  K  D  F  T  A  A  N  K  L  S  G  A  L  L  S  D  G  R  P  A  P  P  R  R  T  Q  Q  E  Q  L  L  H  W  Q  K  N  R  R  M  L  :  A  Y  S  T  V  G  T  P  D  Y  I  A  P  E  V  L  L  K  K  G  Y  G  C  E  C  D  W :   W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M   : A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  S  S  S  Q  *  L  S  L  L  C  F  Y  N  L  G  V  F  Q  V  *  V  K  Y  S  R  R  R  Q  F  C  K  F  W  C  N  C  L  G  S  *  F  A  L  V  L  C  K  L  F  L  G  S  T  Y  I  I  L  F  V  A  S  L  *  F  C  L  L  T  K  L  Q  K  L  V  T  L  F  L  *  S  L  S  T  L  G  L  F  I  S  I  A  L  F  S  I  D  E  C  S  C  W  F  F  L  L :   *  *  K  N  G  E  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76332" stop="76100"/>
                    <exon start="75071" stop="74897"/>
                    <exon start="74301" stop="74218"/>
                    <exon start="74132" stop="73891"/>
                    <exon start="73765" stop="73546"/>
                    <exon start="72660" stop="72581"/>
                    <exon start="72498" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69854"/>
                    <exon start="69753" stop="69697"/>
                    <exon start="68888" stop="68788"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1653</number_coding_nucleotides>
                  <number_encoded_amino_acids>551</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRWRMESAKRWFCKLGKKDKPKPPKKQETTSNGKEGSKLSPHEEAPSTATKQKVAAAKQYIEKHYKEQMKSLQERRERRNMLEKKLADAEVSEEEQSNLLKYLEKKETEFMRIQRHKMGADDFEPLTMIGKGAFGEVRICREKATSHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVESNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDFTAANKLSGALLSDGRPAPPRRTQQEQLLHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGCECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMAELKKKSNKAKRPTVKSLFSEDSEATDSQQAHGSFLNLLPPHLESSKQAEQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77692" stop="77432"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CHQSTKWSSPLPHNSSSSTNTTSFSLFCFPSFSSLGFSFLFFLFFQPFTIQLCFTNNPTYLISLGKPNIYLLSILGFVDLAQSKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="72267" e_stop="71597"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="72267" e_stop="71597" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72267" stop="71597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGAGACTTCAGATATTCTGGTGTTTCAGTTAGTTAGTGTTCTGGTTTGGGGTACAAAACGTCTGACCTGCTTCTAATTATTAGATTGACGAGGATATTACTAATAGAAATTCAATAGTCCGCCAATAAACTTGAACTTTTTACCTAGATAACATTCAAAGACTGCTCTATGGGCCATGTCTAAGTTGCTAAGAGACCTGGAAATGTAATTGTTTGTCTGAGCACAGTGAGCAGTTTGGTATGTGAAGGAAACACTTGTCGGCTATTTGCTTGGAATCATTATAATTCATTCAGTGTCTCACTTATATGGAAAGGACCAAGAGGAAGTAATACAGTTCAACATTATCATTATGCATTTGAGTCATGCCTATCTAAGTTTTATGGTGCAGAATCTCATGCTCAGTTTTGTTCATCCAGAGTCTGAGACACCAAATATCCTTGGGCAGAAGCCTATATTCGAGAAATTTATTGGAATTGTAGAAACTGGATGACATGTAGCCTTGTGTTTCCACTATATATAGATGGTCTATATGTGCATTTCAATATTTACGAACTTAATATCTCAGCAGTTCACACAAGTCAACCTGGAATGAATGCATTCTTATGACATCTTTCTAGGCACATAAGTATCTGTATAGGAAAAACAAGTTTTAAATGGATTTGCTGCATG</gDNA_template>
            <first_frame> L  E  T  S  D  I  L  V  F  Q  L  V  S  V  L  V  W  G  T  K  R  L  T  C  F  *  L  L  D  *  R  G  Y  Y  *  *  K  F  N  S  P  P  I  N  L  N  F  L  P  R  *  H  S  K  T  A  L  W  A  M  S  K  L  L  R  D  L  E  M  *  L  F  V  *  A  Q  *  A  V  W  Y  V  K  E  T  L  V  G  Y  L  L  G  I  I  I  I  H  S  V  S  H  L  Y  G  K  D  Q  E  E  V  I  Q  F  N  I  I  I  M  H  L  S  H  A  Y  L  S  F  M  V  Q  N  L  M  L  S  F  V  H  P  E  S  E  T  P  N  I  L  G  Q  K  P  I  F  E  K  F  I  G  I  V  E  T  G  *  H  V  A  L  C  F  H  Y  I  *  M  V  Y  M  C  I  S  I  F  T  N  L  I  S  Q  Q  F  T  Q  V  N  L  E  *  M  H  S  Y  D  I  F  L  G  T  *  V  S  V  *  E  K  Q  V  L  N  G  F  A  A   </first_frame>
            <second_frame>  W  R  L  Q  I  F  W  C  F  S  *  L  V  F  W  F  G  V  Q  N  V  *  P  A  S  N  Y  *  I  D  E  D  I  T  N  R  N  S  I  V  R  Q  *  T  *  T  F  Y  L  D  N  I  Q  R  L  L  Y  G  P  C  L  S  C  *  E  T  W  K  C  N  C  L  S  E  H  S  E  Q  F  G  M  *  R  K  H  L  S  A  I  C  L  E  S  L  *  F  I  Q  C  L  T  Y  M  E  R  T  K  R  K  *  Y  S  S  T  L  S  L  C  I  *  V  M  P  I  *  V  L  W  C  R  I  S  C  S  V  L  F  I  Q  S  L  R  H  Q  I  S  L  G  R  S  L  Y  S  R  N  L  L  E  L  *  K  L  D  D  M  *  P  C  V  S  T  I  Y  R  W  S  I  C  A  F  Q  Y  L  R  T  *  Y  L  S  S  S  H  K  S  T  W  N  E  C  I  L  M  T  S  F  *  A  H  K  Y  L  Y  R  K  N  K  F  *  M  D  L  L  H  </second_frame>
            <third_frame>   G  D  F  R  Y  S  G  V  S  V  S  *  C  S  G  L  G  Y  K  T  S  D  L  L  L  I  I  R  L  T  R  I  L  L  I  E  I  Q  *  S  A  N  K  L  E  L  F  T  *  I  T  F  K  D  C  S  M  G  H  V  *  V  A  K  R  P  G  N  V  I  V  C  L  S  T  V  S  S  L  V  C  E  G  N  T  C  R  L  F  A  W  N  H  Y  N  S  F  S  V  S  L  I  W  K  G  P  R  G  S  N  T  V  Q  H  Y  H  Y  A  F  E  S  C  L  S  K  F  Y  G  A  E  S  H  A  Q  F  C  S  S  R  V  *  D  T  K  Y  P  W  A  E  A  Y  I  R  E  I  Y  W  N  C  R  N  W  M  T  C  S  L  V  F  P  L  Y  I  D  G  L  Y  V  H  F  N  I  Y  E  L  N  I  S  A  V  H  T  S  Q  P  G  M  N  A  F  L  *  H  L  S  R  H  I  S  I  C  I  G  K  T  S  F  K  W  I  C  C  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72036" stop="71776"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVWYVKETLVGYLLGIIIIHSVSHLYGKDQEEVIQFNIIIMHLSHAYLSFMVQNLMLSFVHPESETPNILGQKPIFEKFIGIVETG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72082" stop="71843"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAKRPGNVIVCLSTVSSLVCEGNTCRLFAWNHYNSFSVSLIWKGPRGSNTVQHYHYAFESCLSKFYGAESHAQFCSSRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="72498" e_stop="72414"/>
            <exon e_start="71203" e_stop="71072"/>
            <exon e_start="70984" e_stop="70871"/>
            <exon e_start="70759" e_stop="70712"/>
            <exon e_start="69938" e_stop="69697"/>
            <exon e_start="68888" e_stop="68712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.497" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.827" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72498" e_stop="72414" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72413" i_stop="71204" i_length="1210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="71072" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.497" acc_prob="0.953">
            <gDNA_intron_boundary i_start="71071" i_stop="70985" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70984" e_stop="70871" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70870" i_stop="70760" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70759" e_stop="70712" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70711" i_stop="69939" i_length="773"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69938" e_stop="69697" e_length="242"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69696" i_stop="68889" i_length="808"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68888" e_stop="68712" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72498" stop="72414"/>
              <exon start="71203" stop="71072"/>
              <exon start="70984" stop="70871"/>
              <exon start="70759" stop="70712"/>
              <exon start="69938" stop="69697"/>
              <exon start="68888" stop="68712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316388" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGTCACTTGGTGCGATCATGTATGAAATGCTCGTGGGGTACCCACCGTTCTATTCTGATGAACCTATGTCCACCTGTAGAAAG : ATAGTAAATTGGCGGACTCATCTTAAATTTCCTGAAGAGGCAAAACTGTCTCCAGAAGCAAAAGATCTCATATGTAAACTCTTGTGTAATGTGGAGCAGAGACTTGGGACCAGAGGTGCTGATGAAATAAAG : GCTCACCCATGGTTCAAAGGTGTTGAATGGGATAAACTTTATCAAATGAAAGCTGCATTTATTCCAGAAGTTAATGGCGAGTTGGATACTCAGAATTTTGAGAAGTTTGAAGAG : GGCGACAATCAAATTCCAACTGCAGCAAAATCAGGTCCATGGAGGAAG : ATGCTCTCCTCAAAGGATGTCAACTTTATGGGTTACACTTACAAAAACTTTGAGATTGTGAATGATAACGATGTTTCTCAAATGGGTACTTATTCTGTCCTTGCAGTAGATTATAATCATTCGATTTATCTTGTTTGTCTTTTTCAGTTTGTGTTTGTTTTGAAATGTTTATTTCTGTTTTTCAGCTGAATTGAAGAAGAAGAGCAACAAAGCTAAGAGGCCTACTGTGAAGTCGCTTTTCA : GTGAGGATTCAGAAGCCACCGACTCTCAACAGGCTCATGGAAGTTTCCTTAATCTTTTACCTCCACACTTGGAATCCTCAAAGCAGGCTGAACAACTATAGCTACATCCAAAACTAATCTGTTAATAACTTCATGACCATAGCCAAACCAAAGTAAACAGGGGCAGCGCCAACCCCT</gDNA_template>
            <first_frame> V  V  T  W  C  D  H  V  *  N  A  R  G  V  P  T  V  L  F  *  *  T  Y  V  H  L  *  K   : D  S  K  L  A  D  S  S  *  I  S  *  R  G  K  T  V  S  R  S  K  R  S  H  M  *  T  L  V  *  C  G  A  E  T  W  D  Q  R  C  *  *  N  K   : G  S  P  M  V  Q  R  C  *  M  G  *  T  L  S  N  E  S  C  I  Y  S  R  S  *  W  R  V  G  Y  S  E  F  *  E  V  *  R   : G  R  Q  S  N  S  N  C  S  K  I  R  S  M  E  E   : D  A  L  L  K  G  C  Q  L  Y  G  L  H  L  Q  K  L  *  D  C  E  *  *  R  C  F  S  N  G  Y  L  F  C  P  C  S  R  L  *  S  F  D  L  S  C  L  S  F  S  V  C  V  C  F  E  M  F  I  S  V  F  Q  L  N  *  R  R  R  A  T  K  L  R  G  L  L  *  S  R  F  S  :  V  R  I  Q  K  P  P  T  L  N  R  L  M  E  V  S  L  I  F  Y  L  H  T  W  N  P  Q  S  R  L  N  N  Y  S  Y  I  Q  N  *  S  V  N  N  F  M  T  I  A  K  P  K  *  T  G  A  A  P  T  P </first_frame>
            <second_frame>  W  S  L  G  A  I  M  Y  E  M  L  V  G  Y  P  P  F  Y  S  D  E  P  M  S  T  C  R  K  :  I  V  N  W  R  T  H  L  K  F  P  E  E  A  K  L  S  P  E  A  K  D  L  I  C  K  L  L  C  N  V  E  Q  R  L  G  T  R  G  A  D  E  I  K  :  A  H  P  W  F  K  G  V  E  W  D  K  L  Y  Q  M  K  A  A  F  I  P  E  V  N  G  E  L  D  T  Q  N  F  E  K  F  E  E  :  G  D  N  Q  I  P  T  A  A  K  S  G  P  W  R  K  :  M  L  S  S  K  D  V  N  F  M  G  Y  T  Y  K  N  F  E  I  V  N  D  N  D  V  S  Q  M  G  T  Y  S  V  L  A  V  D  Y  N  H  S  I  Y  L  V  C  L  F  Q  F  V  F  V  L  K  C  L  F  L  F  F  S  *  I  E  E  E  E  Q  Q  S  *  E  A  Y  C  E  V  A  F  Q :   *  G  F  R  S  H  R  L  S  T  G  S  W  K  F  P  *  S  F  T  S  T  L  G  I  L  K  A  G  *  T  T  I  A  T  S  K  T  N  L  L  I  T  S  *  P  *  P  N  Q  S  K  Q  G  Q  R  Q  P   </second_frame>
            <third_frame>   G  H  L  V  R  S  C  M  K  C  S  W  G  T  H  R  S  I  L  M  N  L  C  P  P  V  E  R :   *  *  I  G  G  L  I  L  N  F  L  K  R  Q  N  C  L  Q  K  Q  K  I  S  Y  V  N  S  C  V  M  W  S  R  D  L  G  P  E  V  L  M  K  *  R :   L  T  H  G  S  K  V  L  N  G  I  N  F  I  K  *  K  L  H  L  F  Q  K  L  M  A  S  W  I  L  R  I  L  R  S  L  K  R :   A  T  I  K  F  Q  L  Q  Q  N  Q  V  H  G  G  R :   C  S  P  Q  R  M  S  T  L  W  V  T  L  T  K  T  L  R  L  *  M  I  T  M  F  L  K  W  V  L  I  L  S  L  Q  *  I  I  I  I  R  F  I  L  F  V  F  F  S  L  C  L  F  *  N  V  Y  F  C  F  S  A  E  L  K  K  K  S  N  K  A  K  R  P  T  V  K  S  L  F   : S  E  D  S  E  A  T  D  S  Q  Q  A  H  G  S  F  L  N  L  L  P  P  H  L  E  S  S  K  Q  A  E  Q  L  *  L  H  P  K  L  I  C  *  *  L  H  D  H  S  Q  T  K  V  N  R  G  S  A  N  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72497" stop="72414"/>
                    <exon start="71203" stop="71072"/>
                    <exon start="70984" stop="70871"/>
                    <exon start="70759" stop="70712"/>
                    <exon start="69938" stop="69750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLICKLLCNVEQRLGTRGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNGELDTQNFEKFEEGDNQIPTAAKSGPWRKMLSSKDVNFMGYTYKNFEIVNDNDVSQMGTYSVLAVDYNHSIYLVCLFQFVFVLKCLFLFFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="90232" PGL_stop="83727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90232" e_stop="90100"/>
            <exon e_start="88065" e_stop="87637"/>
            <exon e_start="87451" e_stop="87287"/>
            <exon e_start="87163" e_stop="86981"/>
            <exon e_start="86849" e_stop="86255"/>
            <exon e_start="85672" e_stop="85560"/>
            <exon e_start="85428" e_stop="85208"/>
            <exon e_start="84686" e_stop="84028"/>
            <exon e_start="83740" e_stop="83727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.786"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90232" e_stop="90100" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="90099" i_stop="88066" i_length="2034"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88065" e_stop="87637" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="87636" i_stop="87452" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87451" e_stop="87287" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87286" i_stop="87164" i_length="123"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87163" e_stop="86981" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.927">
            <gDNA_intron_boundary i_start="86980" i_stop="86850" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="86849" e_stop="86255" e_length="595"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86254" i_stop="85673" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="85672" e_stop="85560" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.964">
            <gDNA_intron_boundary i_start="85559" i_stop="85429" i_length="131"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="85428" e_stop="85208" e_length="221"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="85207" i_stop="84687" i_length="521"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="84686" e_stop="84028" e_length="659"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="84027" i_stop="83741" i_length="287"/>
          </intron>
          <exon e_serial="9" e_score="0.786">
            <gDNA_exon_boundary e_start="83740" e_stop="83727" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90232" stop="90100"/>
              <exon start="88065" stop="87637"/>
              <exon start="87451" stop="87287"/>
              <exon start="87163" stop="86981"/>
              <exon start="86849" stop="86255"/>
              <exon start="85672" stop="85560"/>
              <exon start="85428" stop="85208"/>
              <exon start="84686" stop="84028"/>
              <exon start="83740" stop="83727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCCATTCTCTTTCTCTCCATCATACACTTAACTATTTTCTTGTTTTTCTTGACACGTCCTATTATTCTCGATTTGTAAAACTTACTCATTTCTCCAATTTCAGATCTGCACCTATTCTGCTCAAATACT : GTTATTTCACCAATAGAAGAAATCCATCTTCCTTCAGAATCTAATTTCTGAAATCTGTTACGTTCGGGATCTTGGAGCTAACTGGTCCACCTAAGCAATGACTTCTAAGAATTGAAGGGGAAAGGGTGAAGGTGAAGCTTTTTTGAAGATTCTAAAACTACACAAATGATGCGAGGGAGATCAGATGGAGCGCAGAAGAAGCGCTTGTTGACTTCTGTAGCTGTTGTTGCACTCTTTGTTGTTGTCCTGTATTTTTATTTTGGCTCTAAGAGCAACGGTGAGTCTGCTTTAGAGTATGGAAGCCGATCATTGAGGAAACTGGGATCCTCGTATTTGGGTGGAGATGATGACTCTGATCTTAGCAGCAAGCAAGATGAGAAGTTTGGGCTGGAAGATGGTGAAGATGGCATCGTTTCTAAGAGCTTCCCA : GTTTGCGATGATCGACATTCGGAGTTAATTCCCTGTCTGGACAGGCATCTCATATACCAAATGAGATTGAAGCTGGATCTAACATTAATGGAGCACTATGAAAGACATTGTCCATTGCCTGAAAGACGTTTCAATTGCTTGATTCCTCCTCCAGCTGGATACAAG : GTACCGATTAAGTGGCCAAGAAGTAGAGATGAGGTTTGGAAGGCAAACATACCACATACTCACCTTGCACATGAGAAATCTGACCAAAACTGGATGGTTGTTAAGGGTGAAAAGATCATATTTCCTGGTGGAGGCACTCACTTTCACTATGGAGCTGATAAGTACATTGCTTTAATTGCAAAT : ATGCTGAAATTTCCGAACAATAACTTGAACAATGGAGGAAGGATACGCACAGTTTTTGACGTTGGTTGTGGTGTGGCTAGTTTTGGTGGTTATCTTCTATCCTCTGATATCATAGCAATGTCGTTGGCGCCGAATGATGTGCATCAGAATCAGATCCAATTTGCCTTAGAGAGAGGAATTCCTGCATATCTTGGTGTTCTTGGGACAAAAAGGCTTCCTTATCCAAGCAGATCATTTGAATTTGCTCACTGTTCCCGTTGTAGGATCGATTGGCTTCAGAGGGATGGCATCCTTCTTCTCGAGCTTGATAGGGTGCTTAGACCTGGAGGCTATTTTGCCTATTCATCTCCCGAAGCATATGCACAGGATGAAGAGGATCTCAGAATATGGAAACAGATGAGCACACTTGTTGAACGCATGTGCTGGAGAATAGCAGAAAAAAAGAACCAAACAGTGATTTGGGTCAAGCCTCTAAACAACGACTGTTACATGGAAAGACCAGCTGGTACTCAACCACCACTTTGTCGGTCCAATGATGATCCTGATGCTGTTTGGGGTGTGAACATGGAAGCATGCATAACACCTTATTCTGATC : ATGACCACAAAGTTGGCGGAAGCGGGCTGGCTCCTTGGCCAGCAAGGCTATCCACTCCTCCTCCTCGTCTTGCTGATTTTGGGTATTCAAGTGAAATGTTTGAGAAGGACATG : GAGCTTTGGCAGCGAAGAGTTGAACATTACTGGAATATTTTAAGTTCAAAGATTTCTTCAGACACACTGAGAAATATCATGGACATGAAGGCCAATATGGGGTCATTTGCTGCTGCTTTGAAGGACAAAGATGTTTGGGTCATGAACGTTGTACCCAAAGATGGACCTAACACTCTCAAGATTGTATATGACCGTGGTTTGATTGGCACAACTCATGACTG : GTGTGAAGCATTTTCAACATATCCTAGGACCTATGATTTGCTCCATGCATGGAATATATTCTCCGACATTGAAAAGAAAGGCTGCAGTGGTGAGGATCTGTTACTCGAGATAGATCGCATAGTAAGGCCTAGTGGTTTTGTCATCTTCCGCGACAAACAACATGTTATTGACTTTGTAAAGAAGTATTTATCTCCGTTGCACTGGGAAGCGGTAGCTGATCCAACGCCAGATCAAGACCAGGAAGGGGATGAGATTGTTTTCATCATCCAAAAGAAGTTGTGGCTCACAAGTGAAAGCATCAGAGATACAGAGTAAATGAAGTTTGCTACACTAAAGCACCACTTCATCTTGATTCATTTTTCTCCTAACTTTTGAGATAAATTAAGAACAACACACCTCAAAGGTCAAAGGAGATATCAGTTTGATTTTGTAGTATTTATGATATTTATTTCTTACTTTTCATCATTTAACTTAATTTCCAGTTGTTGTTTCTTTTAGTGACAAACTCATAGACTACATATTATATGCATTTATAGGCTCTATTCTTAAATTTTGGCATTAGTAAAAGCTTACTTTATGCATTACATGTAATGTAAAATTATGTGTTAAACATGTTGCTGAAATGAAGAAGATTCAAAAAGTCTCATAGAAGGAGTTG : AAATTAAAAAAGAA</gDNA_template>
            <first_frame> V  F  H  S  L  S  L  H  H  T  L  N  Y  F  L  V  F  L  D  T  S  Y  Y  S  R  F  V  K  L  T  H  F  S  N  F  R  S  A  P  I  L  L  K  Y   : C  Y  F  T  N  R  R  N  P  S  S  F  R  I  *  F  L  K  S  V  T  F  G  I  L  E  L  T  G  P  P  K  Q  *  L  L  R  I  E  G  E  R  V  K  V  K  L  F  *  R  F  *  N  Y  T  N  D  A  R  E  I  R  W  S  A  E  E  A  L  V  D  F  C  S  C  C  C  T  L  C  C  C  P  V  F  L  F  W  L  *  E  Q  R  *  V  C  F  R  V  W  K  P  I  I  E  E  T  G  I  L  V  F  G  W  R  *  *  L  *  S  *  Q  Q  A  R  *  E  V  W  A  G  R  W  *  R  W  H  R  F  *  E  L  P   : S  L  R  *  S  T  F  G  V  N  S  L  S  G  Q  A  S  H  I  P  N  E  I  E  A  G  S  N  I  N  G  A  L  *  K  T  L  S  I  A  *  K  T  F  Q  L  L  D  S  S  S  S  W  I  Q   : G  T  D  *  V  A  K  K  *  R  *  G  L  E  G  K  H  T  T  Y  S  P  C  T  *  E  I  *  P  K  L  D  G  C  *  G  *  K  D  H  I  S  W  W  R  H  S  L  S  L  W  S  *  *  V  H  C  F  N  C  K   : Y  A  E  I  S  E  Q  *  L  E  Q  W  R  K  D  T  H  S  F  *  R  W  L  W  C  G  *  F  W  W  L  S  S  I  L  *  Y  H  S  N  V  V  G  A  E  *  C  A  S  E  S  D  P  I  C  L  R  E  R  N  S  C  I  S  W  C  S  W  D  K  K  A  S  L  S  K  Q  I  I  *  I  C  S  L  F  P  L  *  D  R  L  A  S  E  G  W  H  P  S  S  R  A  *  *  G  A  *  T  W  R  L  F  C  L  F  I  S  R  S  I  C  T  G  *  R  G  S  Q  N  M  E  T  D  E  H  T  C  *  T  H  V  L  E  N  S  R  K  K  E  P  N  S  D  L  G  Q  A  S  K  Q  R  L  L  H  G  K  T  S  W  Y  S  T  T  T  L  S  V  Q  *  *  S  *  C  C  L  G  C  E  H  G  S  M  H  N  T  L  F  *  S :   *  P  Q  S  W  R  K  R  A  G  S  L  A  S  K  A  I  H  S  S  S  S  S  C  *  F  W  V  F  K  *  N  V  *  E  G  H   : G  A  L  A  A  K  S  *  T  L  L  E  Y  F  K  F  K  D  F  F  R  H  T  E  K  Y  H  G  H  E  G  Q  Y  G  V  I  C  C  C  F  E  G  Q  R  C  L  G  H  E  R  C  T  Q  R  W  T  *  H  S  Q  D  C  I  *  P  W  F  D  W  H  N  S  *  L  :  V  *  S  I  F  N  I  S  *  D  L  *  F  A  P  C  M  E  Y  I  L  R  H  *  K  E  R  L  Q  W  *  G  S  V  T  R  D  R  S  H  S  K  A  *  W  F  C  H  L  P  R  Q  T  T  C  Y  *  L  C  K  E  V  F  I  S  V  A  L  G  S  G  S  *  S  N  A  R  S  R  P  G  R  G  *  D  C  F  H  H  P  K  E  V  V  A  H  K  *  K  H  Q  R  Y  R  V  N  E  V  C  Y  T  K  A  P  L  H  L  D  S  F  F  S  *  L  L  R  *  I  K  N  N  T  P  Q  R  S  K  E  I  S  V  *  F  C  S  I  Y  D  I  Y  F  L  L  F  I  I  *  L  N  F  Q  L  L  F  L  L  V  T  N  S  *  T  T  Y  Y  M  H  L  *  A  L  F  L  N  F  G  I  S  K  S  L  L  Y  A  L  H  V  M  *  N  Y  V  L  N  M  L  L  K  *  R  R  F  K  K  S  H  R  R  S  * :   N  *  K  R  </first_frame>
            <second_frame>  F  S  I  L  F  L  S  I  I  H  L  T  I  F  L  F  F  L  T  R  P  I  I  L  D  L  *  N  L  L  I  S  P  I  S  D  L  H  L  F  C  S  N  T  :  V  I  S  P  I  E  E  I  H  L  P  S  E  S  N  F  *  N  L  L  R  S  G  S  W  S  *  L  V  H  L  S  N  D  F  *  E  L  K  G  K  G  *  R  *  S  F  F  E  D  S  K  T  T  Q  M  M  R  G  R  S  D  G  A  Q  K  K  R  L  L  T  S  V  A  V  V  A  L  F  V  V  V  L  Y  F  Y  F  G  S  K  S  N  G  E  S  A  L  E  Y  G  S  R  S  L  R  K  L  G  S  S  Y  L  G  G  D  D  D  S  D  L  S  S  K  Q  D  E  K  F  G  L  E  D  G  E  D  G  I  V  S  K  S  F  P  :  V  C  D  D  R  H  S  E  L  I  P  C  L  D  R  H  L  I  Y  Q  M  R  L  K  L  D  L  T  L  M  E  H  Y  E  R  H  C  P  L  P  E  R  R  F  N  C  L  I  P  P  P  A  G  Y  K  :  V  P  I  K  W  P  R  S  R  D  E  V  W  K  A  N  I  P  H  T  H  L  A  H  E  K  S  D  Q  N  W  M  V  V  K  G  E  K  I  I  F  P  G  G  G  T  H  F  H  Y  G  A  D  K  Y  I  A  L  I  A  N  :  M  L  K  F  P  N  N  N  L  N  N  G  G  R  I  R  T  V  F  D  V  G  C  G  V  A  S  F  G  G  Y  L  L  S  S  D  I  I  A  M  S  L  A  P  N  D  V  H  Q  N  Q  I  Q  F  A  L  E  R  G  I  P  A  Y  L  G  V  L  G  T  K  R  L  P  Y  P  S  R  S  F  E  F  A  H  C  S  R  C  R  I  D  W  L  Q  R  D  G  I  L  L  L  E  L  D  R  V  L  R  P  G  G  Y  F  A  Y  S  S  P  E  A  Y  A  Q  D  E  E  D  L  R  I  W  K  Q  M  S  T  L  V  E  R  M  C  W  R  I  A  E  K  K  N  Q  T  V  I  W  V  K  P  L  N  N  D  C  Y  M  E  R  P  A  G  T  Q  P  P  L  C  R  S  N  D  D  P  D  A  V  W  G  V  N  M  E  A  C  I  T  P  Y  S  D   : H  D  H  K  V  G  G  S  G  L  A  P  W  P  A  R  L  S  T  P  P  P  R  L  A  D  F  G  Y  S  S  E  M  F  E  K  D  M  :  E  L  W  Q  R  R  V  E  H  Y  W  N  I  L  S  S  K  I  S  S  D  T  L  R  N  I  M  D  M  K  A  N  M  G  S  F  A  A  A  L  K  D  K  D  V  W  V  M  N  V  V  P  K  D  G  P  N  T  L  K  I  V  Y  D  R  G  L  I  G  T  T  H  D  W :   C  E  A  F  S  T  Y  P  R  T  Y  D  L  L  H  A  W  N  I  F  S  D  I  E  K  K  G  C  S  G  E  D  L  L  L  E  I  D  R  I  V  R  P  S  G  F  V  I  F  R  D  K  Q  H  V  I  D  F  V  K  K  Y  L  S  P  L  H  W  E  A  V  A  D  P  T  P  D  Q  D  Q  E  G  D  E  I  V  F  I  I  Q  K  K  L  W  L  T  S  E  S  I  R  D  T  E  *  M  K  F  A  T  L  K  H  H  F  I  L  I  H  F  S  P  N  F  *  D  K  L  R  T  T  H  L  K  G  Q  R  R  Y  Q  F  D  F  V  V  F  M  I  F  I  S  Y  F  S  S  F  N  L  I  S  S  C  C  F  F  *  *  Q  T  H  R  L  H  I  I  C  I  Y  R  L  Y  S  *  I  L  A  L  V  K  A  Y  F  M  H  Y  M  *  C  K  I  M  C  *  T  C  C  *  N  E  E  D  S  K  S  L  I  E  G  V   : E  I  K  K  E </second_frame>
            <third_frame>   F  P  F  S  F  S  P  S  Y  T  *  L  F  S  C  F  S  *  H  V  L  L  F  S  I  C  K  T  Y  S  F  L  Q  F  Q  I  C  T  Y  S  A  Q  I  L :   L  F  H  Q  *  K  K  S  I  F  L  Q  N  L  I  S  E  I  C  Y  V  R  D  L  G  A  N  W  S  T  *  A  M  T  S  K  N  *  R  G  K  G  E  G  E  A  F  L  K  I  L  K  L  H  K  *  C  E  G  D  Q  M  E  R  R  R  S  A  C  *  L  L  *  L  L  L  H  S  L  L  L  S  C  I  F  I  L  A  L  R  A  T  V  S  L  L  *  S  M  E  A  D  H  *  G  N  W  D  P  R  I  W  V  E  M  M  T  L  I  L  A  A  S  K  M  R  S  L  G  W  K  M  V  K  M  A  S  F  L  R  A  S  Q :   F  A  M  I  D  I  R  S  *  F  P  V  W  T  G  I  S  Y  T  K  *  D  *  S  W  I  *  H  *  W  S  T  M  K  D  I  V  H  C  L  K  D  V  S  I  A  *  F  L  L  Q  L  D  T  R :   Y  R  L  S  G  Q  E  V  E  M  R  F  G  R  Q  T  Y  H  I  L  T  L  H  M  R  N  L  T  K  T  G  W  L  L  R  V  K  R  S  Y  F  L  V  E  A  L  T  F  T  M  E  L  I  S  T  L  L  *  L  Q  I :   C  *  N  F  R  T  I  T  *  T  M  E  E  G  Y  A  Q  F  L  T  L  V  V  V  W  L  V  L  V  V  I  F  Y  P  L  I  S  *  Q  C  R  W  R  R  M  M  C  I  R  I  R  S  N  L  P  *  R  E  E  F  L  H  I  L  V  F  L  G  Q  K  G  F  L  I  Q  A  D  H  L  N  L  L  T  V  P  V  V  G  S  I  G  F  R  G  M  A  S  F  F  S  S  L  I  G  C  L  D  L  E  A  I  L  P  I  H  L  P  K  H  M  H  R  M  K  R  I  S  E  Y  G  N  R  *  A  H  L  L  N  A  C  A  G  E  *  Q  K  K  R  T  K  Q  *  F  G  S  S  L  *  T  T  T  V  T  W  K  D  Q  L  V  L  N  H  H  F  V  G  P  M  M  I  L  M  L  F  G  V  *  T  W  K  H  A  *  H  L  I  L  I  :  M  T  T  K  L  A  E  A  G  W  L  L  G  Q  Q  G  Y  P  L  L  L  L  V  L  L  I  L  G  I  Q  V  K  C  L  R  R  T  W :   S  F  G  S  E  E  L  N  I  T  G  I  F  *  V  Q  R  F  L  Q  T  H  *  E  I  S  W  T  *  R  P  I  W  G  H  L  L  L  L  *  R  T  K  M  F  G  S  *  T  L  Y  P  K  M  D  L  T  L  S  R  L  Y  M  T  V  V  *  L  A  Q  L  M  T   : G  V  K  H  F  Q  H  I  L  G  P  M  I  C  S  M  H  G  I  Y  S  P  T  L  K  R  K  A  A  V  V  R  I  C  Y  S  R  *  I  A  *  *  G  L  V  V  L  S  S  S  A  T  N  N  M  L  L  T  L  *  R  S  I  Y  L  R  C  T  G  K  R  *  L  I  Q  R  Q  I  K  T  R  K  G  M  R  L  F  S  S  S  K  R  S  C  G  S  Q  V  K  A  S  E  I  Q  S  K  *  S  L  L  H  *  S  T  T  S  S  *  F  I  F  L  L  T  F  E  I  N  *  E  Q  H  T  S  K  V  K  G  D  I  S  L  I  L  *  Y  L  *  Y  L  F  L  T  F  H  H  L  T  *  F  P  V  V  V  S  F  S  D  K  L  I  D  Y  I  L  Y  A  F  I  G  S  I  L  K  F  W  H  *  *  K  L  T  L  C  I  T  C  N  V  K  L  C  V  K  H  V  A  E  M  K  K  I  Q  K  V  S  *  K  E  L  :  K  L  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87930" stop="87637"/>
                    <exon start="87451" stop="87287"/>
                    <exon start="87163" stop="86981"/>
                    <exon start="86849" stop="86255"/>
                    <exon start="85672" stop="85560"/>
                    <exon start="85428" stop="85208"/>
                    <exon start="84686" stop="84371"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1884</number_coding_nucleotides>
                  <number_encoded_amino_acids>628</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFEDSKTTQMMRGRSDGAQKKRLLTSVAVVALFVVVLYFYFGSKSNGESALEYGSRSLRKLGSSYLGGDDDSDLSSKQDEKFGLEDGEDGIVSKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLTLMEHYERHCPLPERRFNCLIPPPAGYKVPIKWPRSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIIFPGGGTHFHYGADKYIALIANMLKFPNNNLNNGGRIRTVFDVGCGVASFGGYLLSSDIIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRVLRPGGYFAYSSPEAYAQDEEDLRIWKQMSTLVERMCWRIAEKKNQTVIWVKPLNNDCYMERPAGTQPPLCRSNDDPDAVWGVNMEACITPYSDHDHKVGGSGLAPWPARLSTPPPRLADFGYSSEMFEKDMELWQRRVEHYWNILSSKISSDTLRNIMDMKANMGSFAAALKDKDVWVMNVVPKDGPNTLKIVYDRGLIGTTHDWCEAFSTYPRTYDLLHAWNIFSDIEKKGCSGEDLLLEIDRIVRPSGFVIFRDKQHVIDFVKKYLSPLHWEAVADPTPDQDQEGDEIVFIIQKKLWLTSESIRDTE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="99321" PGL_stop="99497"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99321" e_stop="99497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="99321" e_stop="99497" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99321" stop="99497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATTACACACGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  T  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  Y  T  R  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0007I05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="100802" PGL_stop="102073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100802" e_stop="102073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="100802" e_stop="102073" e_length="1272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100802" stop="101513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101373" stop="102073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAACTCCTTATTTCTGACACATAAGTAGGTCTTACCCAATTATTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTCCTCCTTACTTTTAGAGTACATCAGTATGTCATCAATAAATACGATCACAAAGAGATTCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAAAGCAGTAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAACACTTTGTAACTAATCGAACAAGTATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCCCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTAGTGGCATACCAAGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACGATTCAAGATCACAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCCGAAATCCGTAGTTCTAACCTCAACCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTAGCATACCTTGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTGC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  T  P  Y  F  *  H  I  S  R  S  Y  P  I  I  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  L  L  T  F  R  V  H  Q  Y  V  I  N  K  Y  D  H  K  E  I  Q  I  W  L  K  N  P  V  H  Q  T  H  E  S  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  G  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  N  T  L  *  L  I  E  Q  V  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  I  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  S  G  I  P  R  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  *  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  R  F  K  I  T  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  S  *  K  D  F  A  V  A  A  T  C  K  A  E  I  R  S  S  N  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  R  N  L  A  S  Y  A  V  T  D  I  L  P  C </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  *  V  G  L  T  Q  L  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  S  L  L  L  E  Y  I  S  M  S  S  I  N  T  I  T  K  R  F  K  Y  G  L  K  I  P  F  I  K  L  M  K  A  V  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  L  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  T  L  C  N  *  S  N  K  Y  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  S  T  A  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  S  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  L  L  T  P  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  D  S  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  Q  P  F  L  E  R  I  L  P  *  P  L  P  V  R  P  K  S  V  V  L  T  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  K  V  G  *  H  T  L  I  M  H  E  T  *  P  H  M  Q  *  P  T  S  Y  L   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  N  S  L  F  L  T  H  K  *  V  L  P  N  Y  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  P  P  Y  F  *  S  T  S  V  C  H  Q  *  I  R  S  Q  R  D  S  N  M  A  *  K  S  R  S  S  N  S  *  K  Q  *  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  W  F  *  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  F  V  T  N  R  T  S  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  F  *  L  P  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  *  W  H  T  K  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  M  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  H  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  N  H  F  L  K  G  F  C  R  S  R  Y  L  *  G  R  N  P  *  F  *  P  Q  P  L  H  K  T  A  N  P  L  L  W  T  E  T  K  L  G  S  I  P  *  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100967" stop="101305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKLTLRELGIKLFLPQHFQYHSQMLLMFLLTFRVHQYVINKYDHKEIQIWLKNPVHQTHESSRGIRKTKRHHYKFVMPIPGSKSSLWHIRCPYFQLMITGSQVNLREDTNTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101284" stop="101496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRHKHFVTNRTSINARKRILVLYGYLVQLPVVYAHPKTPILLLHKQNRSTPRRCTWSNEAFAQQLLKLGF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101528" stop="101737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSSGIPRRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="102699" PGL_stop="102146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102699" e_stop="102146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="102699" e_stop="102146" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102699" stop="102146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGACCATCTGATACTAGGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAGAATGAACAAGTGCAAAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTGTCTGATCAGGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAATTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  T  I  *  Y  *  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  E  *  T  S  A  K  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  V  *  S  G  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  S  R  T  V  W  C  *  I  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  R  P  S  D  T  R  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  D  H  L  I  L  G  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  R  M  N  K  C  K  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  L  I  L  V  G  C  L  I  R  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  *  *  N  G  L  V  L  N  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102698" stop="102147"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRPSDTRAVTPPPTEEVIREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="102334" PGL_stop="102766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102334" e_stop="102766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="102334" e_stop="102766" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102334" stop="102766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTTTGCACTTGTTCATTCTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGTCTAGGTGTTTGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  V  C  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  T  L  </first_frame>
            <second_frame>  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  F  A  L  V  H  S  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  V  *  V  F  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  H  L  F  I  L  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  S  R  C  L  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  S  C  R  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102489" stop="102764"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTKISENLIDHLWGRLGWQFLILHLFILPILPFSYYFLSRWRSHCPSIRWSRCLSSSSRGRPPTTSTTASCRYS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102568" stop="102765"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNSSFCTCSFSPSSPSLITSSVGGGVTALVSDGLGVCPLPLEDVLPRPLPRPLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="103058" PGL_stop="102773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103058" e_stop="102773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="103058" e_stop="102773" e_length="286"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103058" stop="102773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTTTTTCGTGCTATTACTTGGATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCGGATGGTTAGAACTAGAGCAACGACTGCGCCAACACCAACATCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGTAG</gDNA_template>
            <first_frame> L  S  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  R  M  V  R  T  R  A  T  T  A  P  T  P  T  S  A  R  Q  E  A  S  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  F  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  G  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  L  * </second_frame>
            <third_frame>   K  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  F  S  C  Y  Y  L  D  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  D  C  A  N  T  N  I  G  K  T  R  S  V  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0007I05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103009" stop="102773"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLFFVLLLGSNWYLGDTNWYLTIFTLFRGWLELEQRLRQHQHRQDKKRLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 50 chains have been computed
$ 
$ memory statistics:
$ 163408 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 9078 bytes was the average size of a spliced alignment
$ 22368 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1597 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 67 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-19 08:38:17
-->
