<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 12:56:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325664" ref_strand="+" ref_description="SGN-U325664        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family, contains Pfam PF04432: Coenzyme F420 hydrogenase/dehydrogenase, beta domain; similar to Coenzyme F420 hydrogenase beta subunit (SP:Q00391) {Methanobacterium thermoautotrophicum} | chr1:1282744-1286583 REVERSE | Aliases: T1G11.13, T1G11_13(evalue: 7e-136, score=479) genbank/nr: gi|30678943|ref|NP_171956.2| expressed protein [Arabidopsis thaliana] gi|25083091|gb|AAN72040.1| unknown protein [Arabidopsis thaliana] gi|26451024|dbj|BAC42618.1| unknown protein [Arabidopsis thaliana] gi|30387563|gb|AAP31947.1| At1g04620 [Arabidopsis thaliana](evalue: 5e-134, score=479)">
      <seq>gcgtttcttactggaaaaatctctactttacccttcaaattttacactgtttcatcttcttcacaacaacaagatgcaaaccaaaacctgaaatcagtgaaaattagagaagattggaggaaaaaatctcgacctattcctcctggtgggacttatccagctaaagaccactgcagccactgtggtttgtgtgacacttactacattgctcatgtgaataatgcatgtgctttcttgggggatggcatgtctagagttgaagctttggaacctattgtccatggacgaggacggaaagaagattccttggatgagatttatatgggggtgtatgagaatctattgtatgctcgtaaaactaagcctgtggaaggagctcaatggacggggatagtgacaactattgccgtggagatgctaaaagctgggatggtggaagctgttatttgtgttcagagtgatccagaagatcgatttgctcctcgacctgtcctggcaaggactccagaggaagttatagcagctaaaggtgttaagccgacactgtctcctaatctaaatactcttgccttagttgaggcagctggtgtaaagcgccttctcttctgcggggttggctgccaagttcaagctttaagatcagtggagcaatatttgaatctggaaaaactttatgttctaggcactaactgtgtggataatggaccacgagaaggtttagataaatttctgaaggctgctagcagtgaacctgaaacagttctccactatgagtttatgcaagactacaaggtccatctgaagcatttggatggccatattgaagaggttccctatttctgtttaccagcaaatgacttggttgatgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="8509" stop="1605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8209" g_stop="8137" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7988" g_stop="7886" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="176" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6691" g_stop="6607" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="261" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5305" g_stop="5194" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="373" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5050" g_stop="4966" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="458" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4808" g_stop="4767" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="500" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4665" g_stop="4587" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="579" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4586" i_stop="3901" i_length="686">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3900" g_stop="3849" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="631" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3848" i_stop="3747" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.803" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="3746" g_stop="3684" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="694" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="3683" i_stop="3010" i_length="674">
            <donor d_prob="0.079" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="3009" g_stop="2912" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="792" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="2911" i_stop="2061" i_length="851">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="2060" g_stop="2025" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="828" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="2024" i_stop="1948" i_length="77">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="1947" g_stop="1905" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="871" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U325664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8209" e_stop="8137"/>
          <exon e_start="7988" e_stop="7886"/>
          <exon e_start="6691" e_stop="6607"/>
          <exon e_start="5305" e_stop="5194"/>
          <exon e_start="5050" e_stop="4966"/>
          <exon e_start="4808" e_stop="4767"/>
          <exon e_start="4665" e_stop="4587"/>
          <exon e_start="3900" e_stop="3849"/>
          <exon e_start="3746" e_stop="3684"/>
          <exon e_start="3009" e_stop="2912"/>
          <exon e_start="2060" e_stop="2025"/>
          <exon e_start="1947" e_stop="1905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAGGTTTTGTTTCTCTCCATTTCTACATTCACTGAACAAAATCCTCTTAGAGGAACTTTTTTTTACAAAAAATGACAAACTTTTGCTATGAGTTTTTTTTTTAAAAAAAATTGAAACTTTGTGTGTTGATGTTGTTTGAATTACTCAACAGATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAGGTTCATAATTCTGCTTTTTTTTTTCTTAATATAATTGAAATTTTAGCTTTTAATGCTGTAATGGGAGGTAAATTGCGTAGCTTGATCATTTTTCTATGTATTTTTTTTTTGAAGTTTTTAGTTTTTGTAAGTTAGACTAGTGAAAAAGTTGTTATTTTTATTTGTTATCTTTAAACTATGACATAAATACATAGATAGATATCTTAGGTTGGGCTCAATTGGCAACTGAACACTCAAAGTGTGCATCTTAACTGGTCTTGGCTGTGTGAGTTAAACACTCCCAACGTACAAAATGATCATCTAGACATATAGTGCCGGGTGTCTCGGAGACCGTCTAGATGTGCATTCTTAAAGTTGGAGTATTTAGTTGTTAGTTAAGCAAAGTTAAGGTGTCTATTTATGAATCACTCCCTCTCCGTCCAATATTGTTTGTCATGTTGTGTTTTTTGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAAATCACATTAATTCGATATTTTAAACAAAATAATTAGATATTTTAAAACTATATGAAAAGTACTATAAATTGCAATTTTTTGCATATTAATACGATGAAAAAATACACCTTAAAATGTTAGTCAAAGTTTTTATAGTTTGACTCTATGAATAGACACCATGACAAACAATACCGGACGGAGAGAGTGTCTTAAACTAATATGTGTTTGAAGAGTTCTCCCTTTTCGGAAACTATAATGGTTCAATTTTCATAGTAAATGTGAAAGAACTATAAATATGAGGGAGATTGGGCATTAATTTGGCATGAAGTATAAAAAAGAACCTGAAGTATTCAATTTGAAATGGAGGAAGCATTTCATTGGGTCTTTGAAGCATCGTAGCTTTCCATATCAATTCGTCCTAAGTTGGGTCAAATTTTGTAGAATGGAAAAAAAAGGAGCTTGAATGATGAAGTATTGTTTGGAAGACTGAAATATAAGTTTTGACGTTCACAAGAATATCATATATATTAATTAGCATTTTTTTTGAAATTGGTAAATAATAATTAACATTATTTATATACTAATTCAATGTTTTTGAGGATTATAAGTTAGTATCATTTAATCACTCATCTTCATACTTATTTAAATTAATTTCTTGTATATTTTGTGACTATTTCGTAATCATTATAGTAGTTTTTTGTCTGATGGTAGTTTTTGTTTCTGGTTTGCAGCCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAAGTGAGTCTTTCTCTACTTTAGTACATGTAGATACTGTTGCTTTTAGTTGCAGTTCTTATTGTTTATGCCTAGTTTTTGTTCCTTAAGTTTGTCATAAATGACCTACTGGAGTTTGATTATTGCATGCTTTCATTGTCACATGCAGATTTTCCCTGTGAATTTTGTTTTGTCTTTTGTGTCCTTTGAAAAGCTATCTCATCCATATGGATTTACATCTTATGAATATGTACAGTGTATGCAGTGAAACAAGACTTGGCTGTGATATTGCAGTGTGTTGTGGAAGTCATAAGAAAAGTTTGCAAGCTAGAAAGATGCTCAGAGAGAGTACTGGTTCATGTTCTCTGAGACCGTGTAATCCACTATTAGCTCGTGTGCAATTGAATTCATCTTTCTTTGGTCACTCCACTTCCATTAAAATCCCTTCTGTTGGGAGCATGAGAGTTTTTAACACTTTGTTATTAGGAAAAGTTGCATACTAGAACTTGATGGGTTCACTGGTCCTCGCCTCCGACCCCAACTAGTTCTTTTGACAAGCATGTTTGAATTTTATATTTCTGTTTCACTCTCTTGGGTAAAAGGTATGCTGCTTTGAATGTTGACAAGATATGGAATAAATGAAGTTTTAGGCATTATTATAGAGCTATAAATTACACAAGGTACAAGACACGTATAGTGGATCTTCATAAGAATGATTTCTCTAGTTGTTAACATAATCTCGACATACTGAAATTTATGGGGTTGATAATGTTATACTGAAACACAGTATGGTCGGACTCTAATCAGACTCCTCATAGGGCGATGGGAAAACATTCATAGACCTCCATCAAAGTCTTCGCTATGGTGTACATCTGTCCTCTTCTCTTTTCTCTTTTCTTTGTTTTTTCTACCTTCTGTTTAATAATTTCATACAGCTTAGCATAGTTTACAGGTACAACGTAATCTCGTGACAGGTCAAACTTTTTTCCCCAATTCTATACAATTTTTTTTTTTTTTTGGTTATTGTCCAAAGGAACTTGGTAAAGTTTGAAAATTATTCCGTCTTTAGTTTGACTGGTGGGTGGAGGGTGACAGGGGGTGCATGTAAGTTCTTTTATGAGAAAGAATGATTTGATTACTCACTAAAAAACTTCAGTGCTTGCTACGAGTAGCAGTTCCTTGGAATGCGTTCTCAACTCAGTCATGCTATGCTATTAGGACCTTCTCTTTTGGTCAAATTTATATGAAGTAGCTCAAAGTACAGATAGTATTTCTTATGGTAAAGTGACCAGATGATGTTGACTGTTCCTTATCATCTTCTTTAGGCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAGGTACAACTTTGGATGCTCTTATGTAGTATTCTAGTTCAATTTACTGTTGCTTGTTTTCTTGTGCTCTCTAGATCACTAAAAGAATGTGCCAATTTCTATGAATCATCTGGTCATATTCCTATCTTTTTCTTTCTGGCATTCAGGAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAGGTATGGCTTGCATCCAATTTGGTTAAAAATAATTTAGTTCTCCCTCCTGGTTAATTTCACTGTACATGAGTTATGCACTTGAAATTTTGGTTTCTTTCTTCTACTTATTACCCAGCAATTCATGGACTCTTTACCTTCTTTTTTTTATGTTGTTTAGTGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAGGTTTGTGACTGGGAATTCCTGAGCTATTTGTATTCATGTTGATTTTTTACCTGTTAATTTAACCATTTCGATCTTCAACTTTAATTTTATGTTTCTAATAGGACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTCTTGCCTTAGTTGAGGTTTCTTCTTTCACTTCCATTATCATCAGAATCTTTGATTGTTCTGTTGTCATCAATGCATTTATAATCTGTGTAACTCTATTGAATTCTTAATGGAGCATGTTGTCATGGATTGAAGATGCCATATCTCTCCTCAATAGGTAATTGGAACTTGTGTAGCTATGCTTTCTTATTCTTCACCACACCACCAAATTAGCTTTACTATCACCCCCCCTCCCCCCGTCAGACCACCACAATCTAATACTGTAATTGCCCCAATCGGGGATTTTATTAAGATAAGCTCTTTTGATTTTCTGATTTGTTCCATATTATGGTTCGAGCTGAATTCCTTTCCTGACAATTTCAGAGTCTTTTTGCCAAATTTTTCCTCTCTATCCATTTGAAGGTCGTAGGTTATTTTTTGACTTTATTTTAACTATTTGAGCTTATTTCTCCCCAAATGCTTTCTCCCTTTCTTTTGGTAAGCATCAACCATCTGCATATCACACTTGTAAGGGTAGGCTTCTTGTTATTTCTTTTCATAACAATGCAATCATGGAATTTCACACTTTCTAGTCGTGCATGCTCTAATGCATTAAAAACTGGGCTTTAAGAGATTCCAGTTTTCACTGAGGATTGTCACACAAGTGTATAGTATAACTTGTAGTTCAAATGTTGAAGTAAGCAGTATTGTTTCCTGGAAACAGGCAGCTGGTGTAAAGCGCCTTCTCTTCTGCGGGGTTGGCTGCCAAGTTCAAGGTATCCAAGTTGTTATGATCTCTTCATCTCTGCTTCAAACTTGATGTTGTCATTACAATTTACATCTCTGTATTTTAAGCAGAACAATTTCCTAACTTGCAGCTTTAAGATCAGTGGAGCAATATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTGGTGAGTAGTCGGTGGTATTCATAGACTCCTTTCCTACATCTTTGATCAATTCTAATATAACTACCAACTGCTTGAAATTTGATTATGTTTGTAATTACGTGTGTTTGGAGATCTAATTTTGATCTTTTTTTAAATTAAATAACAAAAAGTTTGATCTATTAACATCACCAGTAGGAGTACTTGTTTGTTGTTAGTATCTCAAAAAAGAGTCAACTTAATTTTTTCAGTTTGTCCACCACAGAAGCAGGGAGAGAAAATAAGACATATAGTAAGTGGACAAACTGGACAAAGATTCAATGGAATCTTTTATGATACTCCCTCTGTTTCAACTTGTTTGTGTGGTTTTTACTTGTCACAAAGTTTAAGAAAGTAAAGAAAACTTTTTGAATTTCGTGGTCTTAACTCTTAAACTATAAATATGTAGAATGTACCAAAATACCTCTTAACTCGTGGTTTCAAACAGGCTATGTGGAAAGTTGGAATTATAGAGTTTCAGGAAAGGGAAAGAAATATTTTTTTCGAAACGGACTGAAAAGGAATAAGACAATTAATTGAAATGGAGGGAGTATATAGTAAGAGGGATGCTCTATAAACTGCTTTTTATTAGAATCTCCTTTCCCCTCTTAGATATTTTTAGTCAATATAGACCTATACTAACTGTCATTTCTCAACAGTGGATAATGGACCACGAGAAGGTTTAGATAAATTTCTGAAGGCTGCTAGCAGTGAACCTGAAACAGTTCTCCACTATGAGTTTATGCAAGACTACAAGGTGTGCTACTGTTATATTTCTTCCATAAAGAAAAAAAAGTAAGCTCCTGTTACTCTTTTATGACAAGCTGAGCTTCATTGTGAGACAACTTATGCATAACCTCTGTGATCTTGGAATTCTATCCATTCAAGTATAAGAACAAGGAAACCAACTTCTACATTCTGTGTTTGTCATGACGATATGTTTTCTGCTTCTGTTGTATTCTAAAACATCAGTAAACAGCCTTTCTTAGTCTGATAACTAGGGTGCTTTTCTAGAATATGTTTTCATTTGGTTGGTGAGGTAAGTTCACTCATGAAGATGCACTTCAATATATCATATTGTCTCCATCCTGATAAATTTTATATGACACATCTTTATTTTGGGCGTACAAAAATCTTTGACACCATCTTACTAACAATATAACTTTATACAACTTCATCAGTTTCTCAAATTTTAATATGTTTGAATAGTCAAATTATTAAGGTTTGATTTGGCATTTCTATGTCAACCTAATTTCGTTTACAAAAATATTTTAAAATTTTCCTCAACTACTACCTATAAAATACACAAATCAAATTAATATCTCAAGTACCATGCCTCGTCCGCTGGTGTCGTGTTGAATTTGATGGAGGGTTACTATCCTTTGTTGGATCAGAAATTTACCAATAAGTAGGATCTTGCAAATGAGAAAGACTAAATTAAGCTCACATGTGCTTCATCACCTTATAGATGAAAACATTTGACAGTTAATCCTGTAAACCATATTATAGCTTTCTTCTTTTACTATGATTTAAAGGATATACTATTGAATTGCATGTGATAGTTTTCTAATCAGTTGAAGCATCTGTCTAAGCTCTACATTTCAACAGGTCCATCTGAAGCATTTGGATGGCCATATTGAAGAGGTAAAATAGCATCTTCTTTTTCGTATCTTTTGTTTTATTTGAATGCTGTTTATTCAGATCTATATTTCACTAAGCAGGTTCCCTATTTCTGTTTACCAGCAAATGACTTGGTTGATGTTA</genome_strand>
        <mrna_strand>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAG....................................................................................................................................................ATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG...............................................................................................................................................GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG.............................................................................................................................................................TGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG.....................................................................................................GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTCTTGCCTTAGTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGGTGTAAAGCGCCTTCTCTTCTGCGGGGTTGGCTGCCAAGTTCAAG......................................................................................................CTTTAAGATCAGTGGAGCAATATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATAATGGACCACGAGAAGGTTTAGATAAATTTCTGAAGGCTGCTAGCAGTGAACCTGAAACAGTTCTCCACTATGAGTTTATGCAAGACTACAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTGAAGCATTTGGATGGCCATATTGAAGAG.............................................................................GTTCCCTATTTCTGTTTACCAGCAAATGACTTGGTTGATGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336946" ref_strand="+" ref_description="SGN-U336946        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gccgagcttagtaatgtgggcttgtaacccaaatgggggcattaatgtggtggaatgttgggctgtaccagatggttgggcttggtgggctaatttctggcctgccctatccaagcacagagttggatcatgtggtccaattgaaagaatgggctactagattcctaaagtggggtggaccgcgtgaggctggtttcacagagcaacgaaaaacttccgctttgtgcagtggaaggataacggaccggtgccttccaagttccattaatgcctgatgggctgctccaattaaaccaccactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="9638" stop="8735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9338" g_stop="9035" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U336946" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9338" e_stop="9035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTT</genome_strand>
        <mrna_strand>GCCGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTACCAGATGGTTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319858" ref_strand="+" ref_description="SGN-U319858        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cgagcttagtaacgtgggcttgtaacccaagtggggatgttaaggtggtggaatattgggctgtcccagatggctgggcttggtgggctaatttctggcctgccctatccaagcacagagttggatcatgtggtccaattgaaagaatgggctactagattcctaaagtggggtggaccgcgtgaggctggtttcacagagcaacgaaaaacttccgctttgtgcagtggaaggataacggaccggtgccttccaagttccattaatgcctgatgggctgctccaattaaaccaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="9636" stop="8739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9336" g_stop="9039" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U319858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9336" e_stop="9039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCAC</genome_strand>
        <mrna_strand>CGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320794" ref_strand="+" ref_description="SGN-U320794        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Dentin sialophosphoprotein precursor (Swiss-Prot:Q9NZW4) (Homo sapiens) | chr3:8662442-8667740 REVERSE | Aliases: F14O13.17(evalue: 5e-25, score=112) genbank/nr: gi|29371977|gb|AAO72706.1| heavy meromyosin-like protein [Oryza sativa (japonica cultivar-group)](evalue: 9e-25, score=117)">
      <seq>tccctctaattttgtcccatcatctttgttcccttaaaaatcaaggcatatttattaactaataactaaaatattgcactacttggaatgactacagttagccttggagaaagacgaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggtaacttgaactcatgtgctagacagcaacatcattctaatcggcttcactttttttgtgtgtagttaagatcttcacctggaactttggatttctttctgtttccctttgtatctttgagtaaactacaaatgcatagttggacatggtttctttggtcatatatggatgtctaatttctaaatagccatcccctacaacatgctcagacattcttcttaatatccggccagctttgttgtagtgttagcaatagaagtctccttgcataagttttcttgatcttcacagctagtttgaaggcggatactaatagttcttctctctttataattgacttgggcaaaagcctttctgttgaatcatctctgtgctctatattgaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaaggagatgaggtggtggaacgggtattgggatggatcatgaaactatttcctggagggccaccaagacgacgaactagcaagcttctttaatctccatggcaagcgaacaatgatgagttatccctgcgaaaagctggtctttttcttctctccagccctgcatttttgtagccaaacggagtctggattttgtacattatccatggtttatacacacacattgcattcttttcccccagaagaagcaaattgtatctaagaggcattttggaagatggaatagctgttctcgacagttttggcaataaaacatgaccgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcaagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgtattccttgtgttgtatttgttgaaagctggggcttaagaaaagcccaatatatcaaaaagatgattttggctgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="12990" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12690" g_stop="11972" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11551" g_stop="11032" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="1249" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1252" polyA_stop="1270"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U320794" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1239</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12690" e_stop="11972"/>
          <exon e_start="11551" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTG-T---TCAT-T-T-TG-GGTATA---AAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAGGTAATTTGACATATCTTGCTCTGTAAGGCTTTAACTGATATGGCTTCTAATTTACTGCTTTTGGAGTGCTAATAAAATGCCAACCTTTTAAAAATCTTTTGTTGCCTTTCTACTTACAAATTAATAGTTCTGCACTTCTGCTGTTACCTTTTTTTAGCAAATGGAACTTCAAGTTTCAGTAAGAGGGGACACAATAAATGACAAGGCCTTTATTCTCTAGGCTGCTCTACGCAAAGGCTATTTTGTTCACTTGAAACTGTAACTATTGCACTAGATCTGCTCATATGCGCTGACCTAGTATGGCCCTGCTTGCACGGTGGTGCATATTGCCAAGCTGATAGTATCCAGTTTGATTAGTTTGGTGATTGTTGTAATCTCTCCTTCTGTTCATTTTTCTCTTTTGCTTCTCGTTTTGATCAGGTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</genome_strand>
        <mrna_strand>TCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGACTT-GGGCAAAAGCCTTTCTGTTGAATCATCTCTGTGCTCTATATTGAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337220" ref_strand="-" ref_description="SGN-U337220        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agttttggcaataatacatgaacgtgttgtttacaagagaattcgtttatcaaacattgtaatgaagatcgagatgtgttttagttgtcaatcatgagagaaaaaaacttcaaatgtttcttacttttcatgtggaaatgatgtttagatcttttgacattgtattccttgtgttgtatttgttgaaagctggggcttaagaaaagcccaacatatcccaaagatgattttggctgtaaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="11566" stop="10730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11266" g_stop="11032" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="238" polyA_stop="256"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U337220" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337220" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11266" e_stop="11032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</genome_strand>
        <mrna_strand>AGTTTTGGCAATAATACATGAACGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCGAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAACATATCCCAAAGATGATTTTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320793" ref_strand="+" ref_description="SGN-U320793        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Dentin sialophosphoprotein precursor (Swiss-Prot:Q9NZW4) (Homo sapiens) | chr3:8662442-8667740 REVERSE | Aliases: F14O13.17(evalue: 1e-59, score=226) genbank/nr: gi|9294667|dbj|BAB03016.1| gene_id:F14O13.17~unknown protein [Arabidopsis thaliana](evalue: 1e-60, score=235)">
      <seq>atgcgaatgtacaattggaatgtaatgctgctgatgagcgtgccaagttattggcttctgaagtgattggcttggaagagaaggcacttcgtctaagatctaatgagcttaagctggagaaagaattggagaagtcacaagctgaaatgtcttcttacaaaaagaaaatcgcaagccttgaaaaagatcgtcaagatctgcaatcaacaatcgatgctttaaaggaagaaaagaagctcttgcaatccaaattcctaatagcttctgctaatggaaagtcagttgatcctagcaggaatatgcctacaaaaatagatgtatcaacttctacagaggatctccgtgaagataatattgcaagtggcaccataaatgatactaatttggttggtattgatggccccaccacatcttccctgcccgattttggacagtttagtctcggaagtttgtcaccagccattcctccagatcagattaggatgatccaaaacattaatacattaatttctgagttagccttggagaaagacgaattaacaaaagccctgtcagttgaatcatctcagtgctctacattgaaggagttaaacaaggacttaactcggaagcttgaagttcaaacacaaagattggagcttttaactgctcaaagcatggcaaatgataacagccaagcaagacaaccagatgcggtatctgtacatgacaatatgccatattctgatgagaatatgccatatgctgatgaggagatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="14927" stop="11672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14627" g_stop="14545" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14544" i_stop="13968" i_length="577">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13967" g_stop="13891" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="160" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13890" i_stop="13392" i_length="499">
            <donor d_prob="0.382" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13391" g_stop="13324" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="228" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13323" i_stop="13124" i_length="200">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13123" g_stop="13010" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="342" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13009" i_stop="12899" i_length="111">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12898" g_stop="12726" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="515" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12725" i_stop="12594" i_length="132">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12593" g_stop="12525" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="584" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12524" i_stop="12149" i_length="376">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.855" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="12148" g_stop="11972" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="760" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U320793" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14627" e_stop="14545"/>
          <exon e_start="13967" e_stop="13891"/>
          <exon e_start="13391" e_stop="13324"/>
          <exon e_start="13123" e_stop="13010"/>
          <exon e_start="12898" e_stop="12726"/>
          <exon e_start="12593" e_stop="12525"/>
          <exon e_start="12148" e_stop="11972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAGGTAATTAAATGCAGTATTCTCGTCTGTTGACCAAAATAATTTCGTAGGAATGTCTATACCAGAATAATTGTCAGGCATGTAGTGAGTTTATTAATTTTAATCCTACATGTAGTTATCCTCTTTGTTACTGGTTTCACATTTAAATTTGAAAGTTGTTCAACTTGATTACCATATATCATAGATTGAATCAGTGTAATGTCATTTACATTTTAAAATTATAAGTTAGTGAGAGTCGAGTGTATAAATAAGTTAACCAGATTGATCCGTGAGATAAGGAATTATAGACTCTGTATTCACCATCAGTTGTTTGGTTTTGAGCTATAAGTCGGATTTGAGATGTCAAACCAGTGTTTTCCTGTTCCTTTTGGGTAAGTGGATGTTGGTTCTTTTTTTCGTTTTTCCTTTTTCGTGTTGCCAGCAAAATATGAACAGTCACTTTTGTGCCTGTTCTTTCTTTTTATTTTTCCCATTCTGTTTGAGACTCTTTTATCGGTCAGATCTTTTTTCTTTTTTAAATTTGTTAATGAGATAGATTATCTTTTCTGCTCTTTATATTTTTGTTTAAAATATTTTGTAGGCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAAGTATGTTTGAGGCTAGACTGTAAATTAATCAAGGCTGTCATGTGCCCATGCAACTCTGTTCTGGTTATAGTTGTCCTTTTATTCTATATTCTGTTTTTCTCCTTCCTGTCCTTTTGACATCACACCCTTTTAGAGTGGGCATGACTCTTTTCTTTTTGGTTTAAGAGGGAGGTGACTTGTGTGGCTTAATTGCTTCTTGGAGATGTAAGTACAAATAGTTTTATGAATATGAAAAGGATGTGCCAAATGGCAGCAGAATGTATTGCTTTTAGTTATGATACCTTTAAAAGATTTGTGGCTCTGAAAGTAAGTAGTTGGGAATCATATTGAGTAGTTGCATGTACACAAGCTCATACTAATTTGGCATAAAAGTTTTAGCATTGATGTAATGTGCGTGAATGAATATCAGAATAAAAAAATTAAATCTTATTCTCGTTAAACTGCAGATTTCTGTTGGGATGTGTTTTTATCTCATCCAACTTTCTCTATCTTCTTGCAGAAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAGGTAAGATATGGTTATATCTGCTTGTGCCTAGAGAAAAGGGTGGTTTGCGTTTTTCATGAGATGTGTCATTTTTGCAATTTTTCCATTTTCACTGCCTTAAAGTTTCTTAAATAAGCATCCCAGGCTTGATAAAAACATCCAACTATCAGAAATGAAATCAATGATTCCTCTCTGTTTCTCTATTGTCTTCTTCTAAACAGAAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCCGTATGTATTTCAGATTTCTCAAATTACTGCGACATATTGTTTTTCAGTTTTTTTTTAAAAATTATCTTTTGCTTTATATATATTCATAGAATTCAATTTGTGTCCATTCAGGTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAGGTAGCATGATATCCTTGAGACTGATCATTTTCTGCTCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG</genome_strand>
        <mrna_strand>ATGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAG........................................................................................................................................................................................................AAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCC...............................................................................................................GTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG....................................................................................................................................TTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAG........................................................................................................................................................................................................................................................................................................................................................................................GAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATG-AGGAGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343010" ref_strand="+" ref_description="SGN-U343010        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Dentin sialophosphoprotein precursor (Swiss-Prot:Q9NZW4) (Homo sapiens) | chr3:8662442-8667740 REVERSE | Aliases: F14O13.17(evalue: 2e-11, score=66.6) genbank/nr: gi|9294667|dbj|BAB03016.1| gene_id:F14O13.17~unknown protein [Arabidopsis thaliana](evalue: 1e-09, score=66.6)">
      <seq>tcctgaagttgggagaaatgttgctggtgtgggatctaataattttgtagtgcctgataaaggatacagccagttaaacagctctgctcttcactcaactaaaacttcttcttggacatcggactccaagtatgatggttttagttttgatgctagaagttcttctagttactcacagatgtccccgcccacagctggggcgactgggaggagaactccctctttccttgattccatgaacatttcaaaagtctctgctgcatcccctccctcaatcggatcagttactacagacacatatgactcaatggcttaccctagggacactctgggtttatcaagttctgagaacttaacaaattcttcaaaaaattctggtaatgggactgttctgtacaagcatgctgttgagaaagatatgggcaatttggacaacagacatccattttattcacagaagcaaaatgaagattttgctgcgttagaacagcatattgaagatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="19271" stop="16797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18971" g_stop="18482" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18481" i_stop="17114" i_length="1368">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17113" g_stop="17097" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="507" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U343010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18971" e_stop="18482"/>
          <exon e_start="17113" e_stop="17097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGAAGTTGGGAGAAATGTTGCTGGTGTGGGATCTAATAATTTTGTAGTGCCTGATAAAGGATACAGCCAGTTAAACAGCTCTGCTCTTCACTCAACTAAAACTTCTTCTTGGACATCGGACTCCAAGTATGATGGTTTTAGTTTTGATGCTAGAAGTTCTTCTAGTTACTCACAGATGTCCCCGCCCACAGCTGGGGCGACTGGGAGGAGAACTCCCTCTTTCCTTGATTCCATGAACATTTCAAAAGTCTCTGCTGCATCCCCTCCCTCAATCGGATCAGTTACTACAGACACATATGACTCAATGGCTTACCCTAGGGACACTCTGGGTTTATCAAGTTCTGAGAACTTAACAAATTCTTCAAAAAATTCTGGTAATGGGACTGTTCTGTACAAGCATGCTGTTGAGAAAGATATGGGCAATTTGGACAACAGACATCCATTTTATTCACAGAAGCAAAATGAAGATTTTGCTGCGTTAGAACAGGTATTTTTACATCTTCTGCAGAGTATGCACAGTGTTGTCTTAAGCCCTGAAGCAAGGCACGGAACTTGTTGAGCACTTCGCCTCGCTTTGTGGGCACTTCAGTGTTGTCATCAATGCTCTATGGCATGCTTTTCCATGCCCAAGTAGTGTAATCCTGAAGATGTGACACTAATCAATTGATATTTCTCTTTATCTAGTTTTTTCAATTTCTTTGTCCATAGATTTATTATTCATGCTTGTTGGACTACACATGCATATTTGTACTTTTTCTTCATTTGTGCCTTTTTCCAATGAAGCCCCCAAAGGACCTTAGAGTTTTTTTGGGCTTTTCGATTTTGATAACACTGGGTATACACTATACAATTGTGGAACGCCCATTTAACTACAAAAATTCAGTCTGCTATTGATGGAAGAAAGAAACAAATAAGACTGACGTCTGGTTTTTTTCCTTAGATTAAAAAATTTATGAAAACACAAAAACAATATACGTTATTCTCAAGGTTGTCTTTTGGAGTAATAAACATATGATCTCTATTTAATAGAAGACTTAAAGTTTTAGAGAATTTTCTAAAATAGCTTACACTCTCTAACGTGTGTAAATAATCCAGCCACTTCAAGAGATTCATTGTCTAGATCTTTGTTAATTTGTACCTTGTCATATATGTGGTAGGTGCAAGTAGCAAATTTGGGTCCTGCTACGAAACCAGGTTGGTATTCAAGTGGGGAAGGCTGGAGGAGTGAGGCCATTACCTATCGAACTTTCTAAATTAAATACGACGGTTTTGTCGATTATTTTAAAAATATATGCATACATATTTAGTCTGTGCATGTACAATTTAAGCTGAAAAAAGAGAAATGATATCGGTATGTTCAATGTCTTGAAAAGGTAACTTGATGTGAACTGAACGCTGCCCAATTGTTTCTCTTCTTTGATTGTGAAATATAGAATGTCCTGTGTGTTTATAAAGGTAAAAGAGTTTTTTGTACACTGATCAGTTACAAATAATAAAAGGACATCTTTGTCACTTCATTCAGATAATACTGTCAAGATTTATGAAAATCCCACATATTTGTTTAATTTTTGTTCCAGATGGAGAATGGTCCCATGCATTTGTACATGTCTAGCGGTTATGGAGCTAAAAAAAAAGAGAGGATAGTCATTTATGATGTATACTAATAATTAGAGCACACTTATCTTCATCTTTCAGATGATATCCTAAATCACAAATGGTATCCTCCATTTCCATAGAGGGGTGGGCTGCCTATCAAAATACTGGGACATGCATAACACATATTTGTCAGGATGTAGATTGTGTAATAGGATCTTTAGTGGTACACACTAACATGCTTTATGCTTATTTTCCACAGCATATTGAAGATTTAAC</genome_strand>
        <mrna_strand>TCCTGAAGTTGGGAGAAATGTTGCTGGTGTGGGATCTAATAATTTTGTAGTGCCTGATAAAGGATACAGCCAGTTAAACAGCTCTGCTCTTCACTCAACTAAAACTTCTTCTTGGACATCGGACTCCAAGTATGATGGTTTTAGTTTTGATGCTAGAAGTTCTTCTAGTTACTCACAGATGTCCCCGCCCACAGCTGGGGCGACTGGGAGGAGAACTCCCTCTTTCCTTGATTCCATGAACATTTCAAAAGTCTCTGCTGCATCCCCTCCCTCAATCGGATCAGTTACTACAGACACATATGACTCAATGGCTTACCCTAGGGACACTCTGGGTTTATCAAGTTCTGAGAACTTAACAAATTCTTCAAAAAATTCTGGTAATGGGACTGTTCTGTACAAGCATGCTGTTGAGAAAGATATGGGCAATTTGGACAACAGACATCCATTTTATTCACAGAAGCAAAATGAAGATTTTGCTGCGTTAGAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGAAGATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331057" ref_strand="-" ref_description="SGN-U331057        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: gi|13016738|emb|CAC29426.1| S-protein homologue [Lycopersicon esculentum](evalue: 6e-06, score=53.5)">
      <seq>agggcgattggcggccaatcggccgaattgataataaaaaaattgattataagaatttgagttctctttcaatggaaattagtttttcttccttattgtttttatcatttttgttattttttcatcaaacaaatgctattactgtccatatagttgatggtattgcaaaaaatgatccccaattgatatttcgctgtaaatctcataaagacgatctcggaacgcatcatcccaaattcaacgatgattttcatttctcgttcaaaaaagatttttttttcgagacggtgttcttttgtcatttctggtggggtaaaaaaaatatctcatttgaagtgtataaagaaactggagcttgtgggcatgaaacaggaggatctaacaaaggaatatgttattggttagttaaagaagacggtttttattttgctatcaatgacaatcctcctccatcttcttttgttaaacaatttggttggtaaaaaaattaatgtaatttaatatttgttatctaattacattatgaaatgaaaaaagaaatttattatgactatgacacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="29393" stop="27565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29088" g_stop="28561" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="558" r_length="528" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28560" i_stop="28012" i_length="549">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28011" g_stop="27983" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="587" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27982" i_stop="27916" i_length="67">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27915" g_stop="27863" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="640" r_length="53" r_score="0.811"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U331057" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331057" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29088" e_stop="28561"/>
          <exon e_start="28011" e_stop="27983"/>
          <exon e_start="27915" e_stop="27863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAAAAAAATTGATTATAAGAATTTGAGTTCTCTTTCAATGGAAATTAGTTTTTCTTCCTTATTGTTTTTATCATTTTTGTTATTTTTTCATCAAACAAATGCTATTACTGTCCATATAGTTGATGGTATTGCAAAAAATGATCCCCAATTGATATTTCGCTGTAAATCTCATAAAGACGATCTCGGAACGCATCATCCCAAATTCAACGATGATTTTCATTTCTCGTTCAAAAAAGATTTTTTTTTCGAGACGGTGTTCTTTTGTCATTTCTGGTGGGGTAAAAAAAATATCTCATTTGAAGTGTATAGAGAAACTGGAGCTTGTGGGCATGAAACAGGAGGATCTAACAAAGGAATATGTTATTGGTTAGTTAAAGAAGACGGTTTTTATTTTGCTATCAATGACAATCCTCCTCCATCTTCTTTTGTTAGACAATTTGGTTGGTAAAAAAATTAATGTAATTTAATATTTGTTATCTAATTACATTATGAAATGAAAAAAGAAATTTATTATGACTATGACAATTCTTATAGTGGCTCTATTTCATTTTAATTAATTAAATATGTTTTGCGATTCATCAAAATGATCGAGAGATTGAAATTTTGATATTATGAATATAGTTGAGTTATTAAGGAAAAAATTAATTTATAATTGAGATGCGGTTCTCCTCGTCGCATCATCTCCTCTTACTCAATCAACTAAAAATTAAATTAGGTCGAATGAATTTCTTTTTTATTTTTTCCCCCCGTCTTAAAAGGGCTTTTTCTTTGCCAATTAAAGAAAACCTTCCAGGGAATTTTTTTTTTTGCTAATTACCCCACTTCTTTTTTTACACCAAGACAAAAATTCCACAAAATTTTTGAAACCCCCATTTTCCTCATAAAATGGTCCCTCCTTTCCCCAAATCAAACCAAACAAATTAATAACGAAAACCAAAATTTTTAAAACAAAGCCCCTTTCGTTTTATTTAAATTTTTTTTGTTTTTGTTATAGAAAGGCGTTTTTTTAAAAAAATGCACCACCAAAAAAAAAACAGCTGTGTTTGTTTATTTTAAGTTCCGCCCCCCCCCCCCAAAAAAAAAATAAAAAAAAAAAAAAAAATTTCCCATTTTCCCCTTATACCCCCTGGCGACTTTGTGTTGTGTAGAGGTTATTTTTCTCCCCCTGTAAAAACAAAAAAAAAAAAAAAAAACAAAAGAACAAAAAAAAAATATATATATT</genome_strand>
        <mrna_strand>ATAATAAAAAAATTGATTATAAGAATTTGAGTTCTCTTTCAATGGAAATTAGTTTTTCTTCCTTATTGTTTTTATCATTTTTGTTATTTTTTCATCAAACAAATGCTATTACTGTCCATATAGTTGATGGTATTGCAAAAAATGATCCCCAATTGATATTTCGCTGTAAATCTCATAAAGACGATCTCGGAACGCATCATCCCAAATTCAACGATGATTTTCATTTCTCGTTCAAAAAAGATTTTTTTTTCGAGACGGTGTTCTTTTGTCATTTCTGGTGGGGTAAAAAAAATATCTCATTTGAAGTGTATAAAGAAACTGGAGCTTGTGGGCATGAAACAGGAGGATCTAACAAAGGAATATGTTATTGGTTAGTTAAAGAAGACGGTTTTTATTTTGCTATCAATGACAATCCTCCTCCATCTTCTTTTGTTAAACAATTTGGTTGGTAAAAAAATTAATGTAATTTAATATTTGTTATCTAATTACATTATGAAATGAAAAAAGAAATTTATTATGACTATGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346974" ref_strand="+" ref_description="SGN-U346974        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tggacacccttttactaatcacctccaatgacagaaaccagaacctgcgagtttggtcatataaagaagaccaccatgagtagtgaagatggggtttctgggttgccctgttttggggttgaagatgataaaggtggaatcttggaagatcggtttgcagaaaaagggaagaagaaaaggagaatttgtgaaatgggttggttgagtgatccattagttgttcttgggacagatgttatgttgatgattttgagctgtctagacgcacgcagcgtggcactgtgtctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="39215" stop="40104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39515" g_stop="39804" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U346974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39515" e_stop="39804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACACCCTTTTACTAATCACCTCCAATGACAGAAACCAGAACCTGCGAGTTTGGTCATATAAAGAAGACCACCATGAGTAGTGAAGATGGGGTTTCTGGGTTGCCCTGTTTTGGGGTTGAAGATGATAAAGGTGGAATCTTGGAAGATCGGTTTGCAGAAAAAGGGAAGAAGAAAAGGAGAATTTGTGAAATGGGTTGGTTGAGTGATCCATTAGTTGTTCTTGGGACAGATGTTATGTTGATGATTTTGAGCTGTCTAGACGCACGCAGCGTGGCACTGTGTCTCCT</genome_strand>
        <mrna_strand>TGGACACCCTTTTACTAATCACCTCCAATGACAGAAACCAGAACCTGCGAGTTTGGTCATATAAAGAAGACCACCATGAGTAGTGAAGATGGGGTTTCTGGGTTGCCCTGTTTTGGGGTTGAAGATGATAAAGGTGGAATCTTGGAAGATCGGTTTGCAGAAAAAGGGAAGAAGAAAAGGAGAATTTGTGAAATGGGTTGGTTGAGTGATCCATTAGTTGTTCTTGGGACAGATGTTATGTTGATGATTTTGAGCTGTCTAGACGCACGCAGCGTGGCACTGTGTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327218" ref_strand="+" ref_description="SGN-U327218        Tomato 200607 #1 [4 ESTs aligned] genbank/nr: gi|50934463|ref|XP_476759.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|50509321|dbj|BAD30779.1| unknown protein [Oryza sativa (japonica cultivar-group)] >gi|50509747|dbj|BAD31799.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-37, score=159)">
      <seq>gcattatccacccatataaatcatgcatggctgcagctcgcaccaaattgagtagatatagtttgtacgtgcttgagaaaacttaaatctgtacgattgaagttaaaacgtccgtttgagggtcggtctttgtgtagctttgcaagtagttggtaagactgcataataccttcatttcttgttcattatgtttaactttttgttcttcactggtcagtttcatagagcttttgccaaaattgaaaacggtttgcatggttctgtatcctgtaagtgctatttgaaccacttctgctgctgcctttgattgctatttcttcacagtttaatgcatctggattcaataaagctttgattggaaactagaggaaggaagagaagttttttggtttgacaagagagtgaaaaaaacgaagtgaagcagatttccctctttcctttcgctagtttccgtcataggataacaaagataaaacataatccttgtataactacaacctatactacttgtgtggacgaatccttaggcggctcctgagtactggcgaatgctcgatccctacaggaatggaactggacgtcccctgcgccgttattttcttccagatggaagtcagactgcagaaccagatgacaagatatggggtggtcatgaatcttgctactccatagtaactagcttgcttgcagatggaaatataagagaacactacgtgaggataaaccgttggccgcctatgtatgtgacaaggaaggaagattggagctgggagatctctaacaacttttgtacctacaagagcataccagatgctgataaaaaagatggcactggacctttgtttctacttcactaggcctctacagtagtttctactttgaagccaaactatggagatgtttgtttgaataattgtaaggccttttgtaaagtatattttgttgatattaataagttttgcaagttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="42508" stop="44078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42808" g_stop="43777" g_length="970"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="970" r_length="970" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="971" polyA_stop="983"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U327218" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>970</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42808" e_stop="43777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGACAAGGAAGGAAGATTGGAGCTGGGAGATCTCTAACAACTTTTGTACCTACAAGAGCATACCAGATGCTGATAAAAAAGATGGCACTGGACCTTTGTTTCTACTTCACTAGGCCTCTACAGTAGTTTCTACTTTGAAGCCAAACTATGGAGATGTTTGTTTGAATAATTGTAAGGCCTTTTGTAAAGTATATTTTGTTGATATTAATAAGTTTTGCAAGTTTTA</genome_strand>
        <mrna_strand>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGACAAGGAAGGAAGATTGGAGCTGGGAGATCTCTAACAACTTTTGTACCTACAAGAGCATACCAGATGCTGATAAAAAAGATGGCACTGGACCTTTGTTTCTACTTCACTAGGCCTCTACAGTAGTTTCTACTTTGAAGCCAAACTATGGAGATGTTTGTTTGAATAATTGTAAGGCCTTTTGTAAAGTATATTTTGTTGATATTAATAAGTTTTGCAAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317394" ref_strand="+" ref_description="SGN-U317394        Tomato 200607 #1 [21 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:14085948-14087213 FORWARD | Aliases: F25I18.4, F25I18_4(evalue: 4e-71, score=265) genbank/nr: gi|18403216|ref|NP_565761.1| expressed protein [Arabidopsis thaliana] gi|25408250|pir||G84742 hypothetical protein At2g33220 [imported] - Arabidopsis thaliana gi|2924772|gb|AAC04901.1| expressed protein [Arabidopsis thaliana] gi|17529030|gb|AAL38725.1| unknown protein [Arabidopsis thaliana] gi|20259081|gb|AAM14256.1| unknown protein [Arabidopsis thaliana] gi|21618056|gb|AAM67106.1| unknown [Arabidopsis thaliana](evalue: 3e-69, score=265)">
      <seq>ggcgattggcggccaatcggccgaattgctccattgaatcgccatcactgtagccctgtaaagcagctcaaaattacagtgttccggcacagagggaaaatcacactgtaggaaaaatgacggaggcaatgataaggaagaaagccggaatggctagcgtgaaagacatgcccttattgcaagatggtccaccaccaggcggttttgcaccggttcgattcgctcgccggatccctaacactggtccaagtgctatggctattttccttactgcttttggtgttttctcatggggtatgtaccaagtcggcgtaggaaataagaagcgaagggtgataaaggaagaaaaatatgctgcccgaagggctatattacccatgcttcaagctgaagaagatgaaagatttgttaaagagtggaagaagtatcttgaagaagaggcgagaatcatgaaggatgttcccggttggaaagttggtgaaagtgtttacaactctgggaaatggatgcctccagcaactggagagcttcgtcctgatgtctggtaagagatgctggtaaagcttccaggacatgcagcacgaaaaactggttcatgtcagtggaggtcatactttctttcggatttctttcctcattggaataaaattgtatctgcaaaatctgtgcaacatgtttaagatgattgctttaacgctattagcattacgagttgggatcataagagacaatgcaacttcatgtttctcttatagttgattcagatcgttttttaatgaataggcgtccttcatcatccatcttctcaatgtgttttcatccaattacaatatggaagtggcttttccagttgcctcaaaacactagagaagccaaatctagcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="48713" stop="43758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48418" g_stop="48109" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="331" r_length="309" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44716" g_stop="44645" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="403" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103">
            <donor d_prob="0.071" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44541" g_stop="44058" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="887" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U317394" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48418" e_stop="48109"/>
          <exon e_start="44716" e_stop="44645"/>
          <exon e_start="44541" e_stop="44058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAGGTATGAATCGAGTTTTTTTTTTTAAGTTTGTGAGAAGAAAATTCATTTGGGTGTGTTTATTTTGGCTTGATTTGATCTGGGTATGTGTTAATTTTTGTTGTTTGTGAAAAAGTTTGTTCCTTTTCTTTTTTTTGGGTTATGTGGGTGATAGCTGATTGTGGTTCTTGGTAAACCCTAAAAATGTTAGCTGAATTTGTGTGCTATGGTTGAGTTGAGCTGATTAAGAATCGAGCTTCTTGTTGTTTTTCTTTTCAGTTTATTTGATTAAGGTAGGTGGAATTTGACAATTCATCTGAATTGGTAAGTGGAATTAGATTGAAGAAAAGGTTTTTAAAATGTGTGGATTCCGATTAAAGAGAAGTATTAGGCTGTGACTCATGATGAGCATACGCCCGAGTTTTGAGTTAAGAATGGAAAGTGGTAGATTTGAAACCAGTCCTTGAGCAAGGGTGTTGATCTGTGGTGATGGGTGTACACTTCAGCAGAAATGTGATGACTCTGTGAAAAATTATATCTTGAGTAGGTTACTTTTACGTGCTAGTACAAATTGGTCTTGATTTTTTACTTTCTATTAAGATTTGTGTGCATCATTGATAATCTTGTCATTTGTTGACTTGAAGCAAGTGATTGCTACTCTAAGAAGTTGTTTCTTTGCACAGCAGAACTGCTCCAGTTAGAGGAGAACCAGAATGTCTAGTTTGCTGGTTTGTCTGATTGTGAAATAAAAGCTAGTACCCAATGTGGCATGCTGGCTGTGGTTATTTCTCATACTTCCAAAATCATCGAAATCAGGATCCTTTCACAGTAGATAGAAAAGTTTGCTCCAAATGGAAGGGGCATTCTGGATTTTGGACTATTGAGTTGTTTTCATTAAGTTAAATAGAATGTATTATCCCCTTAACAGTTAACATACTCCAGTGCTTATAAAGCTTCTTGAGATGGAAACACCAGTTAACAGATTTGTATCTGGTAAGCAATAATAGATCATCAAAATAAATGTGTTCCATCCTTTCTATGGGACAGACTCCAGCAATTGTCCTGGTGCTTCCAGTGACTGTAGATCTTATAGATATGAATGAATTTTAATGAAGATTCCTCTGCTAACAGGAAAGCCTTTAAGGTATTGCATATGTCAGATTTCATGTTATGGCCCTTTTGAGTTGTGTATCTTCTGAAGAAGGATATTATAAACTTCATAGAGTAGTCAGAAATCTGATGAATCATCTTTTTGAATGATAGGTTCTCTCGAAAAATGGAATTTAAGATGGAGTGAAAGATAACGGAGTTTCTAGTTAGCAGGATATTTAAGCAGGTTGGAGGGTAGACTGTAGATGGGTGGGGACACATAGTCCCTGGAATTTTAAACCTGTTGGCCAACAAAGTCGGGATGGAATCCCAAAGGACATTTCTCTGACGTAGGAAAAAAGAAGAAATAGTGCGAGATATTATTTTCAGATCTAGCCAATTGTGACTGTCTTGATGCTCTGGTGAACTGTCATCGTGTGGTTATTGCAAACCCTTGGATGGAGATATTGGAATGTATAATCCTAAGAGAAGTTTTCATTAACAATAAAAAAAATGAATTTGTTATCTTATCCAAAAAAAAATAAAAATGAAGTTGTCTTCATTAGTTATCTCTTTCTTATAATTCATTTGGCAACACCAAAAAGATTTATCTCGTGGAGATGATAAATCCTTTAAATTCAATGGCTTGAAAGTGAGGATAGTCGTCATCGAGAATCCGATTTCCAAAGCCAGAGCTTTACTGTTTCTCATGTCCAACCTGAAAGTTTTTCTCACGCATAAAATCTGAACTCAGATCATGAAGAAGAGAGTACGAGAGCTGCCAGTTTTTTCTCATCTGCTTGAAAATTTATTTGTCTGCATTGTTTTGGTTTGGGGGTGGGGGATAGGTGTCACCAGTTTACAAATCTTCAACTTTAGAGGGTTTCAACTGTAGAGGCTTGTGATTGTCACCAATAACTACAATACTAGTGAGTCTTCTTATGTGCTCCCCCCTGGGTTATCTTTCTATACTTTGAAAATAAATTAGTAAATTTATGATCTTAATCTCCTTCAAATACAATAGATAATCTCTTAGCATAGTGTCATACTTCCCATATTGAAGTTAGCTTTTAGCTATGATCAATTTTGCAGTTGATATTCCATCAAAACACATGTAGTCTCTTTCATTTCAAACAACCTGAAAAATGACTGCGGGAATCATTTTCCAGATCTTTTTTGATGGCTTTGTCAACTGTCTAAAAATTGCAGTTGATATAGGCTTCCTTGATGGACTGGGGCATGATCCAAAACAAGCCAAAATGGAGAGGGATTAAACTACACAATTTATTTGGAATTCACATGCTTTCTTTTTTATTTGGGTAAATCACGTAAAGTTGGGGTGTTCCATAAGAACATAGAATAACCAGCTGGGGCAGTTCTTCTTAGATATTATTTTCAGCTAAGATATTCACATCTCTGGTTAGCCAAAACTATCAATTGGATCAATGGAATTGGCTTTATCACTGCGTCACAATGAACAATTCACCTATGATATTGTTAGTGATTCAAATCAGCATGCATCTCATTCCTTCTACATGTTTGAAAATCTATTTTGTGTTGCCAGCTTTTTCTCTTTATGTAAAACTCATGTTTAAGCATTTATCATATGATTAACTAATAGGGGGATGAAGTTCTACTGCTTGTGGGACTCTGGATGTTGTTTATTTACATTAGTCATCAATTGTTTGGGTTGAAGACCTAATACAAATAAATAAAGGTGCCTTCACTCTAATAATTTTGAAGTTTTAAGATAAGGTAGTCACACAATTCAACTTGGTATTTAGAGCCAAACCTATCCTGGTGTTTAATTACCTAATGTTAAACTGCCATGTTATTTCATCTATGCTCTAAATGGAGCATGCCCGTGTTAAGCCCCACATGGTTTGGGGGTCTCTGTTCTAATATCTATATGTTGTCTTGGTCACTTCTCACCTTACGCATACATTGGTTTGAGGGTGTGGACTCTTGTCTTTCTATATGGTAGTGGAGTATTTTCAATTCATGAGCTAACTCTTGGATTTGAAATAGTCCCAAGGTCCATTTTCATTCGAGCATAATATCAGGGCTAGATGCATCATTGATGTTATTTTAATCAATATTGGGTCATCATTTGTTATCCATGCTCTGAAAACATAGGAGTCAGAGCTCTCTGATATCGGGGTTCTTGGAGGAGCTTGGAGAAGTTGTTTGATCTGAGGACATACCTAAAACTCCCTTCTTATGTTTTGGAATATGTGCACTGGTTGACACCTCCTCCATAGTTCCCAAAACCACCGTCAATCTCAAACTTCTTTAGAAGAAGTTCTGATAATATTTTCACTATGTAGGGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAGGCGAGCCTCCTTGAATTTGTTTCCATTCCATGCCCTGTTTATTTATCGTACTCTGGAACTCGTTATAACTTATCCTACTTTTTTTTTTTTTTTGCTTATTTAGATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAA</genome_strand>
        <mrna_strand>GAAT-TGCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG.......................................................................................................ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315721" ref_strand="+" ref_description="SGN-U315721        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperonin (CPN60) (HSP60), identical to SWISS-PROT:P29197- chaperonin CPN60, mitochondrial precursor (HSP60) (Arabidopsis thaliana) | chr3:8668935-8672585 FORWARD | Aliases: F14O13.1(evalue: 0, score=958) genbank/nr: gi|12546|emb|CAA50218.1| chaperonin 60 [Cucurbita cv. Kurokawa Amakuri] >gi|461736|sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) >gi|478786|pir||S29316 chaperonin 60 - cucurbit (evalue: 0, score=964)">
      <seq>ggggatcttctaggcccttctttactaaattaaatacctttgaagcttcttcttcatccccacttctctctttgtacttcaaaatccctttccactttcactttcagcagcatttctcagcttcaaaatgtatcgttttgcagcaaatcttgcttctaaagccagtgttgcaagaaccagttcccaaaagattggtgggaggttgaattggagtagaaactatgctgcaaaggatatcagatttggagttgaagctagagctttgatgcttcaaggtgttgagcagcttgctgatgctgttaaagtcactatgggtccaaaggggcgtaatgtggtgattgaacaaagttggggtgcacccaaagtgacaaaagatggcgtgactgttgcaaaaagtattgaattcaaggacaagatacaaaatgttggtgctagccttgtaaaacaagtcgccaatgcaacaaatgatgttgctggtgatggtaccacttgtgcaacagttctcacccgagcaatatttgctgaaggatgcaagtcagtggcagctggtatgaatgcaatggaccttagacggggtattaccatggctgtagattctgttgtgacaaacctgaaaagcagagcacggatgatcagtacatctgaggaaattgcacaggttgggactatctctgcaaacggagaaagagtaattggcgacctcattgcaagggcaatggagaaagtaggcaaggagggagtcatcactattcaagacgggaagacattgctcaatgagttggatgttgttgaagggatgaagttggatagaggttacatatcaccatacttcatcacaaatcagaagaatcagaaatgtgaactggataacccactaattctgattcatgagaaaaagatctcaagcattaatgctgttgtgaaagcattggagttagctctgaagagacaaaggcccctcttaattgtggctgaagatgtggacaatgaagcactcgccactcttattttgaacaaactccgtgctggaatcaaggtttgtgccatcaaagcaccaggctttggtgaaaacaggaaagcttatttgcaagatcttgctattttaactggaggccaagtcataacagaagagcttggactgaacattgaaaatttggagttcgagatgctgggaacaagtaaagaggcaactatctctaaggatgatactgtcattcttgatggtgctggtgagaagaagtccatcgaggaacgatgcgaactgattagatcaaccattgaacagagcacatctgactatgacaaggagaagttgcaggaaagactagctaagctttcagggggtgttgctgtgttaaagattggaggagccagtgaagctgaggttggtgaaaagaaagatagagtaactgatgctttgaacgccacaaaggctgcagtggaggaaggaattgttccaggtggtggtgttgctcttctttatgcagcaagagaattggataatttgacaacagccaactttgaccagaagattggtgtacaaattattcagaatgctctgaagacgccagtacatacaatagcctctaacgcaggagtagagggtgctgtcgtggttggcaaattgttggatcaggacaaccttgatcttggatatgatgcggccaagggtgaatatgtagatatgataaaggcaggaatcatcgatccagtgaaagtgatcaggacagctttggtcgatgctgccagtgtctcgtctcttttgaccacaactgaagcagttgttgtcgagcttcctaaggacgagaaggaatctcctgcaatgggtggcggtatgggtggtggtatgggtggcatggacttctgattgaaaagccaaaaacagtaattgcagctgcttgacacatttggtttatagaacaaagcaaaaaaataaatttagatttatttcctattttgatgaatctttttacgatagaaaacgcgcctattgtatcaatagcaagagagacaagaccattgtgaattcatgtttttgtaggttcaaaatttgtagtcttcatttgaaaaagaaaaaaaaaaaanctgagaatagttctctctccctgcagcccggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="49479" stop="74717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49778" g_stop="49942" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50050" g_stop="50074" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="190" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84">
            <donor d_prob="0.310" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50159" g_stop="50290" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="322" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51432" g_stop="51591" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="482" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51718" g_stop="51893" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="658" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52235" g_stop="52330" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="754" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52704" g_stop="52808" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="859" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52931" g_stop="53017" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="946" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53111" g_stop="53200" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="947" r_stop="1036" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="53289" g_stop="53369" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1037" r_stop="1117" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="53460" g_stop="53528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1118" r_stop="1186" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="53724" g_stop="53801" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1187" r_stop="1264" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="53893" g_stop="53988" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1265" r_stop="1360" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="54128" g_stop="54227" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1361" r_stop="1460" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="54308" g_stop="54411" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1461" r_stop="1564" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="54530" g_stop="54714" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1565" r_stop="1749" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="54819" g_stop="55155" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1750" r_stop="2085" r_length="336" r_score="0.970"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="55156" i_stop="55493" i_length="338">
            <donor d_prob="0.000" d_score="0.80"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="55494" g_stop="55528" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="2086" r_stop="2119" r_length="34" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U315721" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>2121</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49778" e_stop="49942"/>
          <exon e_start="50050" e_stop="50074"/>
          <exon e_start="50159" e_stop="50290"/>
          <exon e_start="51432" e_stop="51591"/>
          <exon e_start="51718" e_stop="51893"/>
          <exon e_start="52235" e_stop="52330"/>
          <exon e_start="52704" e_stop="52808"/>
          <exon e_start="52931" e_stop="53017"/>
          <exon e_start="53111" e_stop="53200"/>
          <exon e_start="53289" e_stop="53369"/>
          <exon e_start="53460" e_stop="53528"/>
          <exon e_start="53724" e_stop="53801"/>
          <exon e_start="53893" e_stop="53988"/>
          <exon e_start="54128" e_stop="54227"/>
          <exon e_start="54308" e_stop="54411"/>
          <exon e_start="54530" e_stop="54714"/>
          <exon e_start="54819" e_stop="55155"/>
          <exon e_start="55494" e_stop="55528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCTTCTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAGGTATTTTTCATATTATGTGACTTGCTTTTTTTTTTTTTTTGGTGTTTTATGTGTTGGAAGAGTGAAAGATTTGATTTTGACAAATACCCATTTATTTGTTTGTACAGTGTTGCAAGAACCAGTTCCCAAAAGGTGTGTTTTGTATGTTTGTTTTTTTATGTATAGATTAAAGATGTGGTATGTTTTGGATTGTTGTTTTAAATGGGGTTGTTGTAGATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAGGTGAAATGCTTTATCAACCCCATTTGTGGATATACTCTGTTTGCTCTGTTGAATTGTATGTGGCATTATTGCTATTTGGGGTTGTGTAGTTTGTTTCGTATGTTGTTCTTATAGATAAATATGGTTAGTTATAACTTGTTACCTAGCATTTTTGTTGAAGGCGCCCTTGAAGCCCATGAGTGAGGCTCAAAACACATTGAGCACTTCTCGTTGGATAATGTGTGCTTTAATGTCGTCGTCCATACTCATTAAGATTTTTTTCGTTAGCAAGCTGTATTTTTTGTGCATTTTGCTTTTGATAATATTTTTACCTTGTTTCCAAATATGTGAAGTCAATTGTGTGTTGTCCAAAAATTCAATTGTTTGAACCTTGGAGGGGTTACTTGTTACTCAAGATTGTAGCAGAATTCATTACCCATGGAAAAAAAACAAAAGATAGTAGTGAAACTCATGCTACGAATCTGAATTTTGGTGAAAGAATCTTGTTTTTAGCAAATTATAGACATCTATTTTCCTATTCGTGTACATTGAATATTATGTTGATCTGATGGGGCTTTTCTCTTTCATTTGACTTGTTCATTTGTTGGATCTAATGGTTCAAGTTCATACAAAAATTGCAAAATTATCGCATACGCACATGCTTAATCTTTTGGAAATTGATAACATGAATTCAGTTATGTAGACATGTAAATGGGTTCCATCAAACATTAAATTATTGCCATTTTCAGATGCTCACATGCTTCTTATTGTGTTCTGGGAAGTACTCGTTAGGATTTGGGGCATATGCAACTTAAATGACATTTAGAGGAACTCCTCTGTTTTGGTCCCTACTAAGAAGAATTTGTTGTCCCAGCTGAAAATTATGTCTAACTGTCTATAAGCTTCTTTCTCTGGTTGGCCAAACTTCCTACATTTTGGGACAACTCGTTCTGTTGAAGCAAAAGTGAAATAGTTGCTTTTTTTCCTCATTGCTCCTTGCTTCTGCTGTTTGAGCTTGGAGAACACTAAGGCAGCAATACTTTCTCTGCCGACATACTTGTTGGAGATGAGAATTATTATTCATTACGTTTGTCTCCTATGTTCTGGTGGTAACAGATTCATCATCAACGGTGACAAATGATACTAGATGCCTATTTTGTAGGGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATGGTAAGTCTTTAGGCGTCCAGTATTGCCTCCAGTGCTGGAGTTTGATGTCTCTTTCTTTGTTGGACTGAATTTATGAATTTCCAGCCTAATATAATTGGTGATTCTGTCTCTTCTCTATTTTTTCAGGTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAGGTATCTTTGCAAGTTTTTGAACTTGCACATTAAAAATACTGCTTTTCTGGTACATACAATTCTCTATCTTTTGCAGGCAACCTCCTCCCTCCCTAGAAGCCTCTAAGCCTGACCCCTCCCAACCTAACGCCAAAAAAAAAAAGAGAAAGAAAAGAAAATAAACAGTGAAAAGGAACTCATAGGGAAGCAGTACTACTAGTAGAAGGAGAAAAAGGCAGAAGTAAAAGATTTCCCGTGAAAGTAGATTTAATAATGCACTGAAGAGTTCTGTGTAACTTCTTCTTTGCTTAAGTGATACTCTTCTTCTTCCCATAAGATTTTGATATTGTAACTATTGATAGGTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAAGTAAGTAATCGTATTGTCTATCTATTTATGCATTCTCTGTATGCATCTTTTGGTCACTGTGGTCCTTACTTATCTCTGTGAGCTTCAAAATGAAGCTTCTGATTTCAATATGCTCTTGGGATGTGGGTGGAGCTGGAGTAGAAGATATATTTGCCGAGTTTAACTAATTGATACCTGATGAATATTAGTGTTATATGGGAGAATTTGGGCTAGAAATCAAGCATATAGGATTTTGATAAGTTATTTGTTGCCCAGTTATGAGAAACATCTTTTCATAGTCCAATTTGTATCTATTTGTTATACACTTCGGCTAATTTGTGGGAGACTTGTTACTTTAATGATGTGTAGCTAACTCATTTCTACTATCACACAGGACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGTGTATGTTTTTGGCTTGCTAATCTTAGTTAAGCTCACATGAGTTTGCTCGCTGTGCCAACATTCTTTACATATTTTGCACCATTCTCTTGTTTAAAATTCACTATTCTCCTGATGTCTGGCAGGAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAGGTGATCCTCTTACTGAGATTATCAGTTTGGTGTCTATGAGATTGATCATGTTGCTGTCTATCTTACTCTTGCAGTCTTATTTCATCTATGCAGAGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAGGTATACTGATGAGTGATCGGTATTTCCTGTTCTGTGGTTCGACTTTTCCTCAGTCTGGTGATTATGTATTGTCTGTAAATGTCTACAGGTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAAGTGAGAACTGTTGAACTGTGCTAATGTATGAGATAGTTGATATTTGTCTTAATGATACCTAACCAACGTGTATTACTGCTTGTTTGGTAGGTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAGGTATTTTTGCTGCGTGATTTGGCTGTAGTTGTTTCTTTTACTATGTATGTTTTCTTTTGAATATATATAAGTGCATGAAAAATTGTGCATAATGTGATACATGTTTGGTATTTCTAGTGAGTTATACGCTGGGTAGGGGGGGTCGACTTTATATATGTGTCTCCTACTGTTTTACTCATGCTTTCCTTTCCCTAGGCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTGGTTCGTTTTGCTTACTTTTTCACCAATATCAGTAAAAGCACTGTACTTCTGCATGAGGTTGAGCATATACTCGTGCTCTTTGTATTTGCAGATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAGGTATGCCTCTGTTAGCAACCTGTGTAAATTAAGTTTCTAAAGAAGAATTCAAACTTTTTTATTAGAGGGAAATAGTTGCAACTGTTAATTCAGACTCGTTATTATAACATGCCATCACAGAATGTGTATTAATTTTCAGATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAGGTTTAATACATGTCCGTGAGTTTGTAGCAAAATGGGAAGATCCAATAGTCCGAGATTATTGATCCTCTTTTGTCTTGCAGGTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAGGTTTGCTATGCTCCCTTCTAACCCTGCTAATTAGCTTCTTAGTAATAAAGTAGTTTCACTCCGAGTACTATCTTGTGTTGTGAATGACTTGTGACTTGGTTGAACTTTGTGTTTGCAGACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAGGTTAGCATATAACCCCCTTCCTATTTTCTTGTTCTTCCATCGTTAAGACTTGAGACATTGGCCTCACATTCTTGCCAACGTAACGCCCCTTGTGTTCTATGCAGTGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAGGTCCATTTCAGTGTTCCTTTCTGGTTTTACTATTATATTGAGGTGTGATGAATTCATTTATACTTGTTCTACTGTTCTTTTTTCGAAACTTTTTGACTATGGAGATTGAATCTCTCCAAGCAACGTTTTTCAGTAGCAAGCTATGGTTAAACTTTTTCCGCAGTTGAAATCGACAAATGAAACAATTAGACTCAATAGGTGCACCCCTGACCAAAATTTAGGAGCATCAGATTAAGGTGTCCAAATACAAGAGTGGTTGATTATAAATTGGACCCTATTATTGTTGAAGAATTCTGAATATTCCTAATATATTGTATATGAACATTTTTGAACGATAGCTTAAGAAAACTTCTGGCTCGTGGAATTAGGGGTG</genome_strand>
        <mrna_strand>GGGGATCTTCTAGGCCCTTCTTTACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG...........................................................................................................TGTTGCAAGAACCAGTTCCCAAAAG....................................................................................ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG..............................................................................................................................GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG.....................................................................................................................................................................................................................................................................................................................................................GTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA.....................................................................................................................................................................................................................................................................................................................................................................................GACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT..........................................................................................................................GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG.............................................................................................AGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAG........................................................................................GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA..........................................................................................GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG...................................................................................................................................................................................................GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG...........................................................................................ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG...........................................................................................................................................ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG................................................................................GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG......................................................................................................................ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG........................................................................................................TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAAAAAG-AAAAAAAAAAAAN..................................................................................................................................................................................................................................................................................................................................................C-TGAGAATAGTTCTCTCTCCCTGCAGCCCGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333323" ref_strand="+" ref_description="SGN-U333323        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | PHD finger family protein, contains Pfam profile: PF00628 PHD-finger | chr3:8675965-8678227 REVERSE | Aliases: F14O13.20(evalue: 4e-76, score=281) genbank/nr: gi|18404002|ref|NP_566742.1| PHD-finger protein -related [Arabidopsis thaliana] gi|9294670|dbj|BAB03019.1| gene_id:F14O13.20~unknown protein [Arabidopsis thaliana] gi|21618065|gb|AAM67115.1| PHD-finger protein, putative [Arabidopsis thaliana](evalue: 3e-74, score=281)">
      <seq>atcggccgaattgaacttttaaaagtaaaaatatgttgagctaattctaatcgaagcccatattagggcttcaaactcaaaatcaataattcatcgttagctgtttaaaattctcagaaaaatgtcattcatcgaagaatttcaagccaatatcgaagctcttccgaaccatttgcggaggaagtatgcgttgctgcgtgatttggataaaagtctgcaaggagtccagacccaaaatgaacaacgttgtgacaaagaaatagaggatatgatacagcgtattaaggctggtaatgtgacaccagactcttcactaatcaaattctctgacgatgcattggatgagcaaaagcatgcaatcaggattgctgatgaaaaagttgcactagcttctcaggcatatgatctggtagatgctcatattcagcagcttgatcagtacttgaaaaagtttgacgaagatctccggagagaacgggatactgctgttgttactggagctcctgctaccactgttgaaaataatgtcaaatctggaaggtctggtgagggtaagggagggcgtaaaaaaacacgtcttgctacagcagctgcagctacagccactgcagcaacaccaagtggaatggatttggatctgcctgttgatccaaacgaaccaacatactgtttctgcaatcaagttagctatggtgaaatggttgcttgcgacaatcctaattgcaaaatagagtggttccactacggctgcgttggcctcaaagaacagcccaaggggaaatggttttgcgcagattgtgcaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="63165" stop="57986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62866" g_stop="62729" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="149" r_length="137" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62728" i_stop="62035" i_length="694">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62034" g_stop="61963" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="221" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61962" i_stop="61449" i_length="514">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61448" g_stop="61261" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="409" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61260" i_stop="60392" i_length="869">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60391" g_stop="60328" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="473" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60327" i_stop="60235" i_length="93">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="60234" g_stop="60138" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="570" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="60137" i_stop="58610" i_length="1528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58609" g_stop="58459" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="721" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58458" i_stop="58372" i_length="87">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58371" g_stop="58286" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="807" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U333323" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62866" e_stop="62729"/>
          <exon e_start="62034" e_stop="61963"/>
          <exon e_start="61448" e_stop="61261"/>
          <exon e_start="60391" e_stop="60328"/>
          <exon e_start="60234" e_stop="60138"/>
          <exon e_start="58609" e_stop="58459"/>
          <exon e_start="58371" e_stop="58286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTTAAAAAGTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCAGTAAGTTTCAATTTTTATTTTTTTTTGAATTTTTTTGAATCCGTTTCAGTTTCTGTTCTATAGATTCATGTAAAGATTGAATTTTTGTTTCGAATTCATAAGCCTGAAATTGAGAAAAAATAAATTCAGTACAATTCTAAGGATGCTGTGTACTTTATATGTGTTAAAATAGTTGTCATGTTTCGCTTCGCGAGGAAAAAGGGGATTTTTTGTTAATAGAAAAAAAAAGAAACAAGTGTTTATAGCTATAATGATATAAATAAATATACTCATCCGAGCTGGAATACGAGAATTTCCACCTTGTTGAAGATCTAGTGGTGCTACCCGAAGACTTAAATGAATAGCCAATGAGAATTTGTGTGTAGCTTTTGGTCAATATGACTAATTTTTTCGAGCTAAATTGGATTAGATTAAGTCGATTTTAGTGATTAAGTGAAATAGTTATTGTTTAGTGATGAGTTCATGGTAGAAACGATTAGCGATAAGATGCACGGTTTTTATTGTTCTGGTCCCTGAATTGAAGCGCTGCCTAAGTGACGTGGAACACTCGAGAGTGATTTTTAGTATTCGAGTGTGATTTTTAGTATTGTCTGTGTAAGAGTGATGTGTGATTAATTATATAGGAATTAGTTATTCCTCTGTGCAATCATGGTTTGATTTTTAACAAGTTGCTATGTTGATGATATTATCTCAGATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAGGTATTACTTAATAGTTCAAACTTTATATATTATTGGACTAATAATGTTCTCTTAGCGAGTTAGTTTCTTTCTGACTTTCCATTTTGATGTGCTTATTAAGAACATTTGTACATTGTTGAGTCGATTGATAATTTTCTGAGTGTGGAAATGTTATGTATTTTGAGTCCCATTGCATTATATCTAATGAAATGTCTACTAATGCAATTAGCTTAGTGGAACTGTAGAAGATTCACTGGTATATCCTCATTAAATTGCTGAAACAGAACAGTAATGCTTTGGTCTTCTGGTTGCCACTGGCTCCTTTGTTTTTTTTTTAGAATGCAAAAAACGATGTTGATAAATATACTCCTGATTGGCTAAAAGAAGATAGGGTAATTTTCTAAGATTCTCAATAGCATTTATTATTGCTGTGTTTGTAGCTCGACACAAGCACATCAGGTTTAATGTGTATGCTGTTTCTTCGTTTCTTAGTTTGTGGCATTATTACCAAATAAGTGCTTTTTTTTCTGAACAGGAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTGGTAGGGATTTTGGAAACTGCATCTTCTTTCTACATCAAGCAAACTGTTTCGTTCAATGTTCACAGTTCCTTCACTTCAATCTATTCTAGGTGCATTTGCTATAAGCTTAGTTGTTCAGACTCCTTATTTTAGCTTTCTTTGTAAGTTGGATTATGATGATCGTCGTGAAGTTACTTAGTCTTATTCACTTGATACTTGAATGGGATAGAATATAGAAATGTTTATGAGTTAATCTTTGAAGAAGAGTGTTAATCCTTGACCTTTAGAAGAAAGTATTTGTCTAAATTCCCTTTGTTCCTGAATTACAGAAGAGAAAACTTACGGCATTACTTAGAGGCTGGTTTTGAATGACAATTATTACCAAGTTCCTGTTTGAATATATGGTGGATAGGTAAGTTTTCCAATTTTATTTCAAGGACACAAAAATGATCATGATTGTGAATTGTGATCATAAAATCATGTCCCGAAAAGTTGTATAAATTCCTAAAGGCCACTAACTAAGGAGCTTCTGTAAGATTTTTATTTGAGCAACCCAGACATGAACTTAGTTTTGGTTGCTGAATCCCTTATTAAACTAAATTTTAGGTGTGAACTTCCTTGAAAATATGCTCCAAGATGCACTTAGACGAGATCTGCCAGGTGTTAACTGAATGAATATCATGCATAAATACAAACTGATACAATGAGGAGGAGTAAATGATTGGTTGTACACATTGCTTCACTGGTATATACTTTTGTTTTTATTCCTTCTCAGATAAGTAATAATTGTGTGGTTTGAAATTGAGGTTTGGTAAGGGTAGTAGGTTTTGTTTATTATTGGATCATTAATCTACTCTTTATGGCAATCAGTGAGAAAATTCTTGCAACAGGTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAGGTATGTCTGTATCAGCTTCCTCATCTTTTCACCAAGAACAGTGGCATAACTTATGCATTCTCTGACTGTAGAACAACTTTCTCTTTTATGCAGAACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAAGTAAGTGCTATATTTTTTTCCTGAATATAAAGCCATCATAGTAATCACTGAATGGTCTTTTCGTAGGAAACTTGCTTTAGCCGCACCTTTCCTTATTTTTTTCAGTTAAATTTTTTCTTATAGGGAGCTTTTAGTTGTGTTATTCACCAACCTATTCTAGACAAGTTCCATTTTTTTTATATGGTATCAGGGCTTCTATGACGTCAGTAAAGACCAGTGTAACACCGGCCTACTGTTGGCCTGCTTCTGATGTCTACTTTGCCAAAGCTGCTTCTTCTTTGTATAAGTTTGATATTCCTTTTCTTTTTCCTATGACTATTATGTGTCTTTTTTGGTTATCCTTTTGGTGGCACCTAGAGGCAGAGGTGGGTCCAGGAGTTGAATTTTATGGGTTCTTTCGACGACTTCTGATACACGATAATACTAGTTCACAAAAAGTATAAATAGTTAGGGAATATTTTAAGACATGTGTAGGATTTCAGCAAAAGCTACTGGTTCCCAGAAACCTGCACCCAACATGTTGCATCCACCCTTGGTGGCACCATCTCTCTAGACCACTATTCCATCTATTCCTCCAACAATTTTCAAGTAAAAATATTCCTCCAAACTCCTTTACATATTTTATTAATTGTGCAAGTGTACGAGTATTTAGTTCCTTCTTTAAACATTGAATTCTGCTCATTGTCTTAGAGATCTTCTCTTCTTTCTTCATGGTAATAGAGTTTGTGCACTGAGGCCCTTGTTTGAGTTTTATTTTCAATTGTGCCGAGAGTTTTCTTCTCTTGTTTTTTCCTCTTACAAGATTTTGGATGTTAATCTCCCTTGAACATTGAATTTTTCGCCATTGTTTGATCACTTTTTCCAGTTACTCTTTAGCGGCCTATTCAAGCTAATATGAAATTCAACAGGCTATTGAAGTTATGTTTATGTATTAAAAGTATGTAAGGTTCTAAATGGTACTGATACAATTTGGAGTTTTGGGTATTTAGGAAAGTTTCCCTTTGTAAGGGAGGAATTGGATTTTTCATATTTACTAGTTTGAATTCCCACGGCACCAAAAAATGTTCGTCTTCTTACTCGCCTGAAGATTTACATAAATAATAAGGTATATCATGTTGCTTTGCCTTGTACGTTTGCCCCCAAATATTTTACCCTAGGTTGCTATTCTTTATCGGCAATGTAGTCGCCCTGTAATTTCTGAACAAACATTTTATCCTTTTCCTTTATGACCCACAAAAAGTTTCATCAAGTGTAAGCAGAACAACTTGCTTGATCCATGAGTTTGGTAAGAAGTGGCTTCCCTTGGAAACTGAACCAGCTTAATTTTCTAGTGGTGTTAGTTTTCCAAGTCCCAACGTTTTTTTTCGCCATTCTGTCGGCTTCTGTGGCCAAGGGAAGCCACTTGGGGGAATAGTTGTTATCTGTCGGTTTCTGTGGCCCAACTGATGAACGCTTGTGTGAATGTATATATCTGTCCTTACGTGGTATTATATTGAACTTGTTGTGAAGAGAATAATTTGTTCTGCAGAACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCAAGTGGAATGGATTTGGATCTGCCTGTTGATCCAAACGAACCAACATACTGTTTCTGCAATCAAGTTAGCTATGGTGAAATGGTTGCTTGCGACAATCCTAATGTACGTACTCAGCTCAGTCTTACCAATCATCTCCTTAAAACTTTAGTACATTGAACAATTGCTAAAATTTACTATTCCCTTCAACAGTGCAAAATAGAGTGGTTCCACTACGGCTGCGTTGGCCTCAAAGAACAGCCCAAGGGGAAATGGTTTTGCGCAGATTGTGCAGGAAC</genome_strand>
        <mrna_strand>GAACTTTTAAAA-GTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAG.............................................................................................AACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCAAGTGGAATGGATTTGGATCTGCCTGTTGATCCAAACGAACCAACATACTGTTTCTGCAATCAAGTTAGCTATGGTGAAATGGTTGCTTGCGACAATCCTAAT.......................................................................................TGCAAAATAGAGTGGTTCCACTACGGCTGCGTTGGCCTCAAAGAACAGCCCAAGGGGAAATGGTTTTGCGCAGATTGTGCAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321320" ref_strand="+" ref_description="SGN-U321320        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance-responsive family protein, contains similarity to disease resistance response protein 206-d (Pisum sativum) gi:508844:gb:AAB18669 | chr3:8678745-8679663 FORWARD | Aliases: F14O13.21(evalue: 1e-92, score=336) genbank/nr: gi|15229564|ref|NP_189044.1| disease resistance response protein-related [Arabidopsis thaliana] gi|30725346|gb|AAP37695.1| At3g24020 [Arabidopsis thaliana](evalue: 9e-91, score=336)">
      <seq>aaacatctcaatcaaaaatcccaaaagaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctcctgaattaggtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcatttacagctatgtttgaaggaggtgaatatggtgatagtctaaatttctttggagtttttagaattggaagtacaatgtcaagaatttcagtaacaggaggaactggtaaatttaaaaacgcgcgtggattcgcggaaatacgttcacttataccagctggtcaacatgttgctaatggtgctgagacattgttgaggattgttgttcatcttacttactgaattttcattaatttgatgtaattttgtgtgtgtgtatgtattctgttttgtttgatcaatatgaatattaattgtcttgtttcattgtggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="76799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75534" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76506" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="864" r_length="397" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U321320" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75534"/>
          <exon e_start="76110" e_stop="76506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTGATGTAATTTTGTGTGTGTGTATGTATTCTGTTTTGTTTGATCAATATGAATATTAATTGTCTTGTTTCATTGTGGCAAAGTGAATA</genome_strand>
        <mrna_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTGATGTAATTTTGTGTGTGTGTATGTATTCTGTTTTGTTTGATCAATATGAATATTAATTGTCTTGTTTCATTGTGGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337353" ref_strand="+" ref_description="SGN-U337353        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance-responsive family protein, contains similarity to disease resistance response protein 206-d (Pisum sativum) gi:508844:gb:AAB18669 | chr3:8678745-8679663 FORWARD | Aliases: F14O13.21(evalue: 3e-82, score=301) genbank/nr: gi|15229564|ref|NP_189044.1| disease resistance response protein-related [Arabidopsis thaliana] gi|30725346|gb|AAP37695.1| At3g24020 [Arabidopsis thaliana](evalue: 2e-80, score=301)">
      <seq>aaacatcttaatcaaaaatcccaagggaaaaatgtttatcaaatttgcaattttatttgtatttgtaccatttgtagttgcaattgatcatgtaagtacaagtacaccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaggcaatatttatagtggacaaataccatttgctacaccacttggttttgaacctccagaagatggtgttgcaattccaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctacggctagggttcgggacaatcacggttatcgatgacttcttgacctcgtctactgaattaagtacacaaaaacttggaaaagcacaaggagtatatgtagcaagttcagcagacggaagtactcaaatgatggcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="76487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75534" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76110" g_stop="76187" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="545" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U337353" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75534"/>
          <exon e_start="76110" e_stop="76187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAGGTACTGTAGACACGTAATTCTTGACCCTCCTCTTCTTTCTTACTTTACTAGTTTCAAGTTTAAATATTTCTTCTATGTGTCACTTTAATACCTAAGTTTGGATTTCATTTTGAGGATATCAAAAAGTGCATAAATGTGTCTTTTAACTTGACCTCATTTCACATATATATCCTCCAACTTTAGGAGTACATCAATAGGTACTTAAACTTGCATAAAGCTGATCCAGTATACACATGAGTCCTACGTGGCATAATATACACCACGTAGGATGCAAATTGTCATGTAGGATGTCACATAAGACACGTCTCTCTATTTATTCATACCTAAAGTTGGAGAGCATAACTGTGAGTTGAGGGGCATGTTGATGTATTGTGCCTATCGAAAAGTGCAAAAAATAGTACATAAACAGAAACTCAAACTTGGCCTGACCTGGCAAGTAAACACGTCAACTTTGAGTATGCACGTCGAGATACCTCATCTCTGAGTCTTTATATCTCGACTCCTCTTAGTGAAAACAAATCCTAGCTCCGCGCCTACGCTACGTATTGAATGAACTTTTTACATTTTTTTAACAGGTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTA</genome_strand>
        <mrna_strand>AAACATCTTAATCAAAAATCCCAAGGGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTACGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTACTGAATTAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337354" ref_strand="+" ref_description="SGN-U337354        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | disease resistance-responsive family protein, contains similarity to pathogenesis-related protein (Pisum sativum) gi:4585273:gb:AAD25355 | chr4:7900370-7901262 FORWARD | Aliases: T6G15.130, T6G15_130(evalue: 2e-58, score=222) genbank/nr: gi|15236315|ref|NP_193094.1| disease resistance response protein-related [Arabidopsis thaliana] gi|7487742|pir||T06660 hypothetical protein T6G15.130 - Arabidopsis thaliana gi|4678384|emb|CAB41116.1| putative protein [Arabidopsis thaliana] gi|7268061|emb|CAB78400.1| putative protein [Arabidopsis thaliana] gi|19698841|gb|AAL91156.1| putative protein [Arabidopsis thaliana] gi|21386937|gb|AAM47872.1| unknown protein [Arabidopsis thaliana](evalue: 1e-56, score=222)">
      <seq>aaacatctcaatcaaaaatcccaaaagaaaaatgtttatcaaatgtgcaattttatttgtgggggtaccagttgggggtgcgagtggtcatgtaagtacaagtgcgccacaagaaccggttcttgaattgtacatgcacgatatcttgggaggaaataatccaacagctcgaccaataacgggtttattaagcaatatttatagtggacaaataccatttgctacaccacttggttttgaaccttcagaaaaaggtgttgcaatttcaaatgctaatggtgcaatgccaacattcaatatcaatggtgttccattaggaacaggtctagcaggcacaatatttgctggaggaaataataataataatggacaaaatgtgaatactcaattaggccctgatggtctagggctagggttcgggacaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="74768" stop="75795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75068" g_stop="75495" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U337354" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75068" e_stop="75495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCA</genome_strand>
        <mrna_strand>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATGTGCAATTTTATTTGTGGGGGTACCAGTTGGGGGTGCGAGTGGTCATGTAAGTACAAGTGCGCCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAAGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTTCAGAAAAAGGTGTTGCAATTTCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345564" ref_strand="+" ref_description="SGN-U345564        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 5e-05, score=51.2)">
      <seq>aaactatttcaagaatctgtttgtaaatcccaagaaaatgcaccaccaccaccaccctcctccaccaaccaccacccccaccaaaatctcaacaccctttatcattcttgccaccactatcttctcacttctccttattcttaccttctccttcacttnccctncaccccacccccaccccaaccaaccccaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="78824" stop="79620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79124" g_stop="79320" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U345564" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79124" e_stop="79320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATTTCAAGAATCTGTTTGTAAATCCCAAGAAAATGCACCACCACCACCACCCTCCTCCACCAACCACCACCCCCACCAAAATCTCAACACCCTTTATCATTCTTGCCACCACTATCTTCTCACTTCTCCTTATTCTTACCTTCTCCTTCACTTCCCCTCCACCCCACCCCCACCCCAACCAACCCCACCCTT</genome_strand>
        <mrna_strand>AAACTATTTCAAGAATCTGTTTGTAAATCCCAAGAAAATGCACCACCACCACCACCCTCCTCCACCAACCACCACCCCCACCAAAATCTCAACACCCTTTATCATTCTTGCCACCACTATCTTCTCACTTCTCCTTATTCTTACCTTCTCCTTCACTTNCCCTNCACCCCACCCCCACCCCAACCAACCCCACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U347097" ref_strand="+" ref_description="SGN-U347097        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G24040.1 | Symbol: None | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein, contains Pfam profile: PF02485 Core-2/I-Branching enzyme | chr3:8680914-8683280 REVERSE | Aliases: F14O13.23 (evalue: 8e-74, score=274) genbank/nr: gi|46518433|gb|AAS99698.1| At3g24040 [Arabidopsis thaliana] (evalue: 2e-72, score=276)">
      <seq>cacttgttactcaagatgatcttctacacattctgtcatatcttcccaaggatcttaattttgtcaaccacacaagctacatagggtggagagagtcaaggaagttgaaaccaatagttgttgatcctgggctctatcttgaagaagaagatgaagtattttatgcaactcagaagagggaactgcctgatgcttatcgattattttcagggtcttcatctagtatcttgagtcggaagtttatcgagttctgcatcttgggcacggataacctacccaggactctgctaatgtacttgtcaaattcaccatcctcgtcatctgtgtatttcccgaccattctgtgcaattcaaggaaattcaatagaacaacaatcaaccacaacttgcggtatgcttcatttaactcaagaaaagaggcccttccactcaataccagtaacttcaatgacctggtgatgagtggagcagtgtttgctgcaccattcgaggcaaacaatccgattcttgaccagatcgacagtgaacttctccaccacaagtacgatgaaccagtccctggcggatggtgtttaggtgaaaatgaaactgataaatgtactgtctggggagacgcagaagttctaagaccaggtccaggagcacagagactggaagaaagatttgtccagattttcagtaatggtacatttcgttctagtcgatgtgtctacgaatagagctccctcaagatgagaacatacagaagagacaaacactcgaaaaatgttttctatcgaaaaccacctctctacctcccaaggtagggttgaggtttgtgtatacactaccttccccagactcacacactgggtatgttgttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="79426" stop="83143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79726" g_stop="79743" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79744" i_stop="81059" i_length="1316">
            <donor d_prob="0.778" d_score="0.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81060" g_stop="81135" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="94" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81136" i_stop="81236" i_length="101">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81237" g_stop="81352" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="210" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81353" i_stop="82187" i_length="835">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.826" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82188" g_stop="82843" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="866" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U347097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U347097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79726" e_stop="79743"/>
          <exon e_start="81060" e_stop="81135"/>
          <exon e_start="81237" e_stop="81352"/>
          <exon e_start="82188" e_stop="82843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTGTTACTCAAGATGGTATGAATTATGTGTAAAGATGTAATCTTTTTGATGTTTTTACTGGATTTAGTGTGTGTTGATTGCCCATTTGTTTGTCAAAACTCAATATGCATGATGGGTAATGTTGAAGATATGTTCTGTTTAGTGTAAAAATTGGGTCTTTTTTGTTTACAAGTATGTGTAAAGATTTAATCTATTGGTGGTTTTACTGGATTTAGTGTCTGCTGATTAGTCAAAACTCTATATGCATGTTGGGTAATGTTGAAGATATGCTCTGTTCAGTGTGAAAATTGAGTCTTTATTTGAGAAGTATGTACAAAGATTTGATCTTTTTGATGTTTTTACTGGATTTAGTGTGTTTATTGTCCAGTTGCTAGTCAAAAACTCTATATGCATATTGGATAATGTTCAAGATTTGCGTAATTGGGGAGATAAGATTAAGAATAAGGATATCCGGGACAAGGTGGGAAAAGGCTTCTATGGTGGACATGATGCGGGAAGCAAGGTCAAGATGGTTTGGATATGTGAAGAGGAGATGTGCACGTGCTCGATTAAGGAGGCGTGTGAGATTGGATATGGTGGGTATGAGGAGGGCTAGAGGAAGCTAAAGCAGTGTTGGGGAAGAGGTGATTAGATAGGACATGGTGTAACTTTAGCTTACGGAGGGCATGATCTTAGATAGGAGGGTATGGAGGTTGCGGATTAGGTAGAATGTTAGTAGGTTGTTGAGCTTTGACTCACTTCTCGACGGGTTTAGGCTCCGTGGGAGTCTGAGAGAACTGTGTTATTTGTAGTATTAGCCTTGTGCATGTATTTTCTTTTCAGTTAACACATTGTTTCACAAATATTACTATTTCTATTCTCGTAATATTTTGTAATGCTTTCCTTATTAATTGACATGTTTTCTTCACAATCATATTCCCTTTTTTCGGGAATACTTTCGTTTACTGTTTTTGAGTCGGGGTTCTTTTGGAAAAAACCTCTCTACCTCCATGTGGTAGTGGTAAGACTAAAATCGGAGTACACTCTACCCTTCCCAGACACCACTTGTGGGATAATACTAGGTATGTTTGTTGTTTGTTGTTTGTTGTTTTAAACTGTTTGTTATTGGATTTAGTGTGTGCTGATTATCCAGTTATTGGATGTATTAACCGTGCTGTTGAACATGAACAGATATATTTTCCTTTTCCATTACTGTTTATCACTTCGATTCAGGCATTGAAATTCTATCGAATGGATCTAATTATGCCATCGGACTCATTTCTCATTACAACACACTTTCACTTAGGTAATGACTGATGAGTAATCTGATGCTGTTTTCTGTTGATTTTCAGATCTTCTACACATTCTGTCATATCTTCCCAAGGATCTTAATTTTGTCAACCACACAAGCTACATAGGGTGGAGAGAGTATGGCCATATCCTTTTCGTATTATAAGTTTCTATATTTCTGTCTAAGCAAGTAATGTATGGTTTTAGATCTTATTATATGAGCGTTTTGGATGTTCCAGGTCAAGGAAGTTGAAACCAATAGTTGTTGATCCTGGGCTCTATCTTGAAGAAGAAGATGAAGTATTTTATGCAACTCAGAAGAGGGAACTGCCTGATGCTTATCGATTATTTTCAGGTCAGATGCTTGGTAGCCATATTTTTGGCATTATGAATGATGAAAGGATGAATATATTTGTGTTAAGTAATCCCCTTGAGTGTATGATTGAGAAAAATAGTTTTGATATGAAGTGGACAACCATAACATTGAGTCACAACCTTTTTTCGTGCTAAAAAAAATAGAATGAAAAATAAAGTACAGCATAGACATTTTAAAAGCAACTTTGAGTTGAAGTAGCCCAGTGCACAATGCATCCCAAGACTTATAAGGGTCCTCTGAAGAACCGCACACTAAGGGGTGTGATATAGACAGCTACCCTAATGCAAGCATTAATGACTGCTTCCAGGGCTCGAACATGTGACCTATACGACCACACGGAGACAACTTTACCGTTGCTCCAAATCTCCCCTTCTGGTATTCGATGAAGCAGATGACCAGAAAGTTTAAAGTAGTTAAGTGGGCAGAATTTTGTTTCAAGTGTTCTGTTAGAAAGCACAAGCATCTGAGTACGTCTAAATGTCCATCCTTCTCCGAATCTTAATGCAAAAAATGCTACAATAGATGGCCATGACTCTACACATTTTAGCTACATTGTACGCAGAAAATCGATTTCAGTTTAGAATCAAAATCTTTCAGTCTACAAAGCATCGCCCATGTTCCAAGTGTCTACTATTTTATCCTTCACCTTGAAAAGGCCCCAATGTTTTTTTGGAATTTAAAACTTTTTGGATATGCGACAACTAGGGCAAGGGTGTGTAGTAGTAGTAAAGCAACCATCCTATTGTGTTACTGGTTCGGTATGTGTTTAAATTATTGAAGTCTAATACTAACAAGCATGTCCTCTTGGCTACAGGGTCTTCATCTAGTATCTTGAGTCGGAAGTTTATCGAGTTCTGCATCTTGGGCACGGATAACCTACCCAGGACTCTGCTAATGTACTTGTCAAATTCACCATCCTCGTCATCTGTGTATTTCCCGACCATTCTGTGCAATTCAAGGAAATTCAATAGAACAACAATCAACCACAACTTGCGGTATGCTTCATTTAACTCAAGAAAAGAGGCCCTTCCACTCAATACCAGTAACTTCAATGACCTGGTGATGAGTGGAGCAGTGTTTGCTGCACCATTCGAGGCAAACAATCCGATTCTTGACCAGATCGACAGTGAACTTCTCCACCACAAGTACGATGAACCAGTCCCTGGCGGATGGTGTTTAGGTGAAAATGAAACTGATAAATGTACTGTCTGGGGAGACGCAGAAGTTCTAAGACCAGGTCCAGGAGCACAGAGACTGGAAGAAAGATTTGTCCAGATTTTCAGTAATGGTACATTTCGTTCTAGTCGATGTGTCTACGAATAGAGCTCCCTCAAGATGAGAACATACAGAAGAGACAAACACTCGAAAAATGTTTTCTATCGAAAACCACCTCTCTACCTCCCAAGGTAGGGTTGAGGTTTGTGTATACACTACCTTCCCCAGACTCACACACTGGGTATGTTGTTGACT</genome_strand>
        <mrna_strand>CACTTGTTACTCAAGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTACACATTCTGTCATATCTTCCCAAGGATCTTAATTTTGTCAACCACACAAGCTACATAGGGTGGAGAGA.....................................................................................................GTCAAGGAAGTTGAAACCAATAGTTGTTGATCCTGGGCTCTATCTTGAAGAAGAAGATGAAGTATTTTATGCAACTCAGAAGAGGGAACTGCCTGATGCTTATCGATTATTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTCATCTAGTATCTTGAGTCGGAAGTTTATCGAGTTCTGCATCTTGGGCACGGATAACCTACCCAGGACTCTGCTAATGTACTTGTCAAATTCACCATCCTCGTCATCTGTGTATTTCCCGACCATTCTGTGCAATTCAAGGAAATTCAATAGAACAACAATCAACCACAACTTGCGGTATGCTTCATTTAACTCAAGAAAAGAGGCCCTTCCACTCAATACCAGTAACTTCAATGACCTGGTGATGAGTGGAGCAGTGTTTGCTGCACCATTCGAGGCAAACAATCCGATTCTTGACCAGATCGACAGTGAACTTCTCCACCACAAGTACGATGAACCAGTCCCTGGCGGATGGTGTTTAGGTGAAAATGAAACTGATAAATGTACTGTCTGGGGAGACGCAGAAGTTCTAAGACCAGGTCCAGGAGCACAGAGACTGGAAGAAAGATTTGTCCAGATTTTCAGTAATGGTACATTTCGTTCTAGTCGATGTGTCTACGAATAGAGCTCCCTCAAGATGAGAACATACAGAAGAGACAAACACTCGAAAAATGTTTTCTATCGAAAACCACCTCTCTACCTCCCAAGGTAGGGTTGAGGTTTGTGTATACACTACCTTCCCCAGACTCACACACTGGGTATGTTGTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329385" ref_strand="+" ref_description="SGN-U329385        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF01169: Uncharacterized protein family UPF0016 | chr4:7900370-7903940 REVERSE | Aliases: T6G15.140, T6G15_140(evalue: 2e-23, score=105) genbank/nr: gi|42566759|ref|NP_193095.2| expressed protein [Arabidopsis thaliana](evalue: 9e-22, score=105)">
      <seq>agcactcggtgcagctcagtctccatggggcgtggcaagtggtgccattgccggacacctggttgctacatctattgcaattctaggaggcgggtttcttgccaattacatttctgagaaactggttggctacttgggcggagttctattcttaatatttgctgttgctactttgtttggagtcttttaaccaagctctacagaaaagaagacaatgtcgataagttctaagacgcctatttagactggatagatacgcgagaaatgccaatggtagagggcaagaaactcctgatggtaccatggatcagtaacatgatttggcataaaacaatgacattcttgtactactgtagaagaagtagaagaaactatattagtggttcttaggcaacacaagagagctgtgtgtatgtgtaatactatggcccccatcagaaaatttttctgacagttgatgcttttccatgattgttgtacaagttttgtatatgtgaaagaatcaagatttctgttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="84148" stop="82961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83981" g_stop="83963" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83843" g_stop="83739" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="124" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83652" g_stop="83264" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="513" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="528"/>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U329385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83981" e_stop="83963"/>
          <exon e_start="83843" e_stop="83739"/>
          <exon e_start="83652" e_stop="83264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTCGGTGCAGCTCAGGTACAGTTTCTATGAAATTCAATACTAACAATATATTTTCCGAGCTTGCCATAAAAACAAGTTCCAAAACCTCCAACTTCCATTTATTTCCTCACTGCCATACTGCCTCTATTTCGCAGTCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTGGTAAGCTAGCGCCTATTTTTTCCCCCGAATCTGCCCTGAACAATTATATTTTGAATTATAAGCATTTTATCTTGGTTCTACTACAGGTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</genome_strand>
        <mrna_strand>AGCACTCGGTGCAGCTCAG.......................................................................................................................TCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTG......................................................................................GTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339369" ref_strand="-" ref_description="SGN-U339369        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF01169: Uncharacterized protein family UPF0016 | chr4:7900370-7903940 REVERSE | Aliases: T6G15.140, T6G15_140(evalue: 2e-42, score=169) genbank/nr: gi|7268062|emb|CAB78401.1| putative protein [Arabidopsis thaliana] >gi|4678385|emb|CAB41117.1| putative protein [Arabidopsis thaliana] (evalue: 2e-40, score=169)">
      <seq>aaggaaaaggcatcaaaacgggtcccaaatccccttgaaattttgtggaagttttttagcctcgtattttttgctgaatggggagatcgatcaatgcttgcaacaatagccctcggggcaggtcagtttccatggggggtggcaagtggtgccattgccggacacctggttgggacatttattgcaatattagggggggggttttttgccaattacatttttgggaaactggttgggtacttggggggagttttatttttaatatttggcgttggttctttgtttggggttttttaaccaagttttacagaaaagaagacaatgtcgataagttttaagacccctatttagactggatagatacgggggaaacgttaatggtagggggcaagaaactcctgatggttccatggatcagtaacatgatttggcataaaacaatgacatttttgttcttctgttgaattagtagaagaaaatattttagtggtttttaggcaacccaagagagctgtgtgtatgggtaatactatggcccccatcagaaaaattttttgacagttgatgcttttccaagattgttgttcaagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="84725" stop="82989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84619" g_stop="84611" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84610" i_stop="84424" i_length="187">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.709" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84423" g_stop="84358" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="75" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84357" i_stop="84014" i_length="344">
            <donor d_prob="0.894" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84013" g_stop="83963" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="126" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83843" g_stop="83739" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="231" r_length="105" r_score="0.886"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86">
            <donor d_prob="0.995" d_score="0.86"/>
            <acceptor a_prob="0.984" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83652" g_stop="83289" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="595" r_length="364" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U339369" ref_strand="-">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339369" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="84619" e_stop="84611"/>
          <exon e_start="84423" e_stop="84358"/>
          <exon e_start="84013" e_stop="83963"/>
          <exon e_start="83843" e_stop="83739"/>
          <exon e_start="83652" e_stop="83289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAAAGGTGAAAAAGCTGCTGAATGCCACTCATAAATGCTGTTTTATTCTCTGAGATTTCTGCGCTTCCTAATGTCTTTAACACCAGAACATGTATTTATGAGGATGACTTCTATCTCTTTCCTGTCTCCATATTTGCATCACTTGCATCTTCAAAAATCTGGTTCTAACGATTTTATAGATGGATATTTCAGGCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCTGTAAGTATCTTCATCCGGTTGCAGCATTGTTTCTTTTGTACTTTCTTCTTCCAATAAAGAGCCAATGCAAACAGGGACAGATGTCGTGTAGATGGTAGATAGAGTGCAAGCTTCCATGACGCCAACATATATTTAATTACAAAAAATAGTTATTTGTATCATTTTTATAGTGTTCATGTAAGTTGTTTGAGTGTGACATGGAAGACTAGAACTGGTTTCTGTGGTTTTGCATTCACAACATCAAAGTCTAGAAAGTGTTATGTAACTATATCCAGTTGCTAAAGAACATCGAGGCCTGTTGTAGTTTTCAAGTTAGGAATCTTAATACTTTTTTTGCCTCCTAGGAATGGGGAGATCGATCAATGCTTGCAACAATAGCACTCGGTGCAGCTCAGGTACAGTTTCTATGAAATTCAATACTAACAATATATTTTCCGAGCTTGCCATAAAAACAAGTTCCAAAACCTCCAACTTCCATTTATTTCCTCACTGCCATACTGCCTCTATTTCGCAGTCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTGGTAAGCTAGCGCCTATTTTTTCCCCCGAATCTGCCCTGAACAATTATATTTTGAATTATAAGCATTTTATCTTGGTTCTACTACAGGTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTG</genome_strand>
        <mrna_strand>AAGGAAAAG...........................................................................................................................................................................................GCATCAAAACGGGTCCCAAATCCCCTTGAAATTTTGTGGAAGTTTTTTAGCCTCGTATTTTTTGCT........................................................................................................................................................................................................................................................................................................................................................GAATGGGGAGATCGATCAATGCTTGCAACAATAGCCCTCGGGGCAGGTCAG.......................................................................................................................TTTCCATGGGGGGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGGGACATTTATTGCAATATTAGGGGGGGGGTTTTTTGCCAATTACATTTTTGGGAAACTG......................................................................................GTTGGGTACTTGGGGGGAGTTTTATTTTTAATATTTGGCGTTGGTTCTTTGTTTGGGGTTTTTTAACCAAGTTTTACAGAAAAGAAGACAATGTCGATAAGTTTTAAGACCCCTATTTAGACTGGATAGATACGGGGGAAACGTTAATGGTAGGGGGCAAGAAACTCCTGATGGTTCCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTTTTGTTCTTCTGTTGAATTAGTAGAAGAAAATATTTTAGTGGTTTTTAGGCAACCCAAGAGAGCTGTGTGTATGGGTAATACTATGGCCCCCATCAGAAAAATTTTTTGACAGTTGATGCTTTTCCAAGATTGTTGTTCAAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322148" ref_strand="+" ref_description="SGN-U322148        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile PF01169: Uncharacterized protein family UPF0016 | chr4:7900370-7903940 REVERSE | Aliases: T6G15.140, T6G15_140(evalue: 4e-90, score=328) genbank/nr: gi|42566759|ref|NP_193095.2| expressed protein [Arabidopsis thaliana](evalue: 3e-88, score=328)">
      <seq>gaactccacactctctaatcagttcttcagcttcttggttacaactaacttcctgaaaaagtgtagagaatccaaatattttttattaaattttttgttcacaaatgactttatagtaaaaaaaaagctatcttttatagtttttagtatattgaattaagaaaaaaatgcaggggttggctcttcaaacatctaattctatagcatcaagttatggtgggaagaaaaagttttcatttttgaatgttttggattcattgcctagcaaaaaatcaatacccacaaggagaatttcccctttttcagctggaatttcatctttattaagatgtagagcgctccctaagttgcagcgaaggcatagcagaattataccctatgcatctaatgttggtgtcggatctggaagttttgaagaaagtcaaggaaatgaaagccacaatgtttcagtcaatcagccgtctactgatggttcatcgaaaattgaggcacttccaagtaaaattccttatcctctcgctatagctcttgtgctatgtggatgttcgttagtattttcggtgattgccttcacgaaaggaggaccgtcatcactcattgcagcattttcgaaatcagggttcactgctgcattctcattgatatttgtttctgagattggagacaagacatttttcatcgctgccctcctggccatgcaatataagagaatactggtccttttgggatcaatgggtgctctttcacttatgacggtcttctctgtcataataggaaggatctttcattcagtacctgctcagtttcaaacaaccttgcctattggagaatacgcggctgttgccctcttgttcttttttggcctcaaatcaattaaagatgcatgggaacttccaagcaatgatgttgagactggtgaaaagactagccaggaacttgatgaatttgcagaagctgaggagcttgtgaaggaaaaggcatcaaaacggctcacaaatccacttgaaattttgtggaagtcttttagcctcgtattttttgctgaagggggagatcgatcaatgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="-" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="90108" stop="83689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89808" g_stop="89485" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743">
            <donor d_prob="0.791" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87741" g_stop="87582" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="484" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86697" g_stop="86514" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="668" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86084" g_stop="86037" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="716" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85475" g_stop="85379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="813" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="85378" i_stop="84775" i_length="604">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="84774" g_stop="84611" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="977" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="84610" i_stop="84424" i_length="187">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="84423" g_stop="84358" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="978" r_stop="1043" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="84357" i_stop="84014" i_length="344">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="84013" g_stop="83989" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1044" r_stop="1068" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="-" ref_id="SGN-U322148" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1068</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89808" e_stop="89485"/>
          <exon e_start="87741" e_stop="87582"/>
          <exon e_start="86697" e_stop="86514"/>
          <exon e_start="86084" e_stop="86037"/>
          <exon e_start="85475" e_stop="85379"/>
          <exon e_start="84774" e_stop="84611"/>
          <exon e_start="84423" e_stop="84358"/>
          <exon e_start="84013" e_stop="83989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTATGTAAGTTTTTTTATGAATACCCTTTTTGATTTTGAGTTCAAGAATTTGATTTGATTGAGTGATTTGTGGGTATGTTAGTAGTTAAGTGAATTTAGAGATGCCCCATTTTGAATTTATGAGAAATTTTGGTATAAGTTTTATTGAAATGTTGTTCTTTGCCCCCATTGTAATGATTTCACTATTGTTTGATATGTCTGCTTTGCATCTGTGTGTTATTTTTAACATTGCTTTGTTATGAGTTACTTGAGTCTGAGGGTCTTTTGGAAACAACCTGTCTACTTTCACAAGGTAGAAGTAAGGTGTGTGTACGCCTTGTCCTCTCTAGACTCCACCTATTGGGATTACACTGGGTATGTTGTCGTTGTTGTTATGTTTACTGATTGAGGAGTTGGATGGTATCTTATTGCTCCAGTTGGATGTTTGCTATTTTGGATTTTTATTGAGATAATATGATACTCTCTTATGAGGAAGCTTATTTGGGCTAGTCATAGTGGTTTAGCTCAACAACCATCATTCATGTAAAAACAATGGAAAAATATTCAATGAGCACCCAAGAGGGTAGCCTAGCGGTTAATGCTGTGTGTGAAAACCAAGGGAGACCCGAAAGCCCTTGCCATCAAAAGCAAGAGATTTGCCATCTGGTTTGAGCTCGTCGCACCGGGCTTGCCTAGTGCGGGTTACCTGTATGGTTTGTGAGCTATTGCATAGGAGTGTGGGTTTTACCTTGTGCGCATCCAAAGCATAGCGACTGTGGTTTCCCTTGTCATTAAAAAAAATCAAGGAAGACCAAGGTTCAAATCCTAGGAGAGATAATAAAACGGTTGGTGATTTCTTCACTTTCCCCTAAATCTTAGTGGGCCTAGTTACTTGGTAGTTGTGCTGGTGGGTGGTAGTTAGTACCCAGTGGAAGAGGTTAAGGTGAGCGCAAGCTGGAGTGTAGCCTAGTGGTTAATGTTGTGTTTGAAAACCATGGGAGATGAGGTATTTAAATACTATCAGAGACAATAAAGCGGTTGATGATTTCTTCACTTCTGCCTATATCTTAGCGGGTAGAGTTGCTCGGTAGTTGTGCTGGTGGGTTGTAGTAGGTACCCGATTGAATAGTTCAAGGTGTGTGCAAGTTGGACATCATTGTTATCACATTTGAAAAAATAACACTAAATGAATCTATATTAAATTAGAAGCTTTAGGCCTTTTCTGGCGTTCCTCTTTTGGTTTGGGGGAAGGTGGCTAATTTGAAGTTATTCCAATTTTGTGCTGTTGGTGTATTCAGTTGGATTTATTGCTTTTTCATGCACTCAGTTAGAAAAATGTTTGAACATATCATGGTCAAAGATAGTGTAGCTTGACTTATAGTCGCTAGGGATCTAATTCAGGAAAAAGGACTATTAGTGTATCAGATATATTTATGGCTTAAGATGATTTTTTACATTACGATACATGACAATTGCTACTTAATACATATATGAGGGCTTTTGAACTCTATATTACTTCAATCCTGCAAGTAATTTAGTTTATAGAATGAAAGTCCTTAAGATGGTAAATAAATTCACTTTATATTAGATGCGAGATGCCACTTTCCTGTCAGATGACTTTCTTACTCCCCACCAAGATCATTTCTGGATTTTTGATCCGCCACTTTTTAATATTCCTAGTAGAATTAGATTCTTATATTTCTTTCCTTCTGACTACTACATCTTGTTGCTCTATTTCGTTACTGACTCATGCCTTTATTACTTTTAGTAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAATGTATGCTATATAACTTGGCAATTAAATAACGAGAATTTCTATCCAAATACAAAATTGTGAAAGGTTTGGTGAATACTTTAAACTTCTTTTCTGCATAAAGAGCATGTTGTTAACAAGTATATGGGGAGAGGAAGATAGGCTGTTAAATCTTTGTAAAGGGTCCCTAGAGTTAGAGTGCATTTGGTTTGTGGGATAACTATTATCCAGCCAATGGCTGGATTTATCAAGAGTGCATGTTTAAGTACTTGATCCTGTTAAACCTCACATCACAAGGATGATTGGATGATAAAGTTTAATGGCTTATGAAAGTTTGTTGGGGATGGATTAATATGATGTGAACAATATACATTATACTTAAGAAATTGTCTTGTAGTGCTGGTAATTTGGTGTCAAGAAACAAAGAAGTAGTGTTCCCTGATTCTTCCAATGCAAAAATTTTCACATTTAAATTCTCAATATGACAAGTATATCACCTTAATGCAGCTTGATCAAAAGCATCTGTCAATGTCCAACAGACACCTCTTCTTTCGGCATGTGGCCTATGTTTCGGGAGTTCTGCTTACATAATAAAACTTCAAGAATTCTTTTTAGAAAAACACAAATAGAAAAGAGTATCTATAATGACTTCAACTGTCAGTGCAGTCACAATTACAGATGGCTTTGATTACATTTTCTTTCCTTCAAGAATGAAAGGAAGAGGTTCAGGCTGCAATCATATTTCGTTACACATTTATTAAGTTATATAATCCTAATCTTTGATATATCAAACATGAACTCTTCTGACTTTCTAGGAATCTTCATGCATTTTAATATGGGGAAACATGTTTTAGTTTGATTGCAACTAACTATGAAACTTATGTATGTTTAACTTTCATGAATGGCAGTGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAGGTAAATGGAGAGATTGACACAATATGCTATACTTATTAGCTTTCGTGAACTCATGACTGTTTGTTGCCCTTTCATTTCTTTGGTTCTTAACCTTTTCATTCTCTTTGATACGGATAGTGCTCGTGGTCTCATCTCTGGCTGTTACATAAATACCTTGTAGGTGTAAAAGTGGTGTAACACATAATCATGGCTAAGCATTTATGCATCAATTTGCAAAAAATTCACTATTTGGTGTCTTTTATTGAAAAACTTTGATGCTTTCAGAATGAGCCTTATGACACTGTACATCATTCTACTGATACGAATGTATTCCCAGCTAATTGATTGAGTTATTTAATCTGGGATCTGCTTTTGTGCTATGCTAGTTTGCGATAATTCGTCTTATTCAAAATATCTAACTAATTCTTTCTTTAATATGCAATTCAACAGACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTGGTATGACCTTTAGCGTTCTGTCCCTTACTTCTCCTTTTCTATCTCTTTTGCATCAAATTATCTTAAGTTTTAAGAGAATAAAAGTGAATAATTGTGACTGAACTTAGGTATATCTTTAAAGCATTCTGCTTGAAGGTTTCATACCTTAAACTTTTTTCTTTTTTGTATCTTGTAGCATTCTTTCTTTATAGGCTATCAGTACTGCCTGAAATTTTGAGGATGGGGATCCTAGATTACGATCATTTGGTGATTGCAGGATTTGTTTGTAGAATTATTGATCAAACTGAAAAGGACGCAATCCATTTTTCATTATATAATTATTATTTAGGAGTTATAATCTTGCCTAATTATGTGAAAGCAAATGAAATATAAAAACTCATTGAAATACAAAAATGGGGCTTAATATAGAATGCACACACAAGTTTGTAGATTGAATATTGATATATTGTAAATGCACTTTGGTTTTTAGTGTTTCTTGCTACTGCTATACAGAAATGTAATATTGTGGTCACTTCTGTTCTGTTCAATTCTATATCTTACTTGAATTGCATCAATGACCAGGTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAAGTAAGTTCGACCCGAGGACTGTCATTTGTTTTTATTCTTGGTTTTTTTATTGGCTTCTTGGGATCTTTATATTTGGCACATTTTGCTTAGCATTTGCTTTTGTTGAAGCAAACTTACCCTAAATTGTGTTCATGTTTTCAGAAAGTAAATGATTAATATGCGCATTAGTTGGCAGAAAGCTTACTGATAAATTTTTTTTGGTACATTATGACTGGCTCATCAAGTATGCCGATCATTGGATATTAGAACTTAACATTCTCTTGGCAAGTTTGGTTATGCAGTGCTTCTTACTCTTGCTTGATAATGTCTCTTCCTGCGAAGTATAGACTGTAGTGGTATTTTATAGTGTTCATTTCTCCTAGTGTACCTTTTCTTGCACATGCACACTGGAAAACACACCCTTTTGGCCACCAGAACTACTCGAGTTTCACATAAAATCCAGAGCTTGCAATGACCTATACTTCATACGCGATAGCATTTCCCTCGAAGAATCTAAAGTTTCCCTCTTTCCAAACCATCAAAGATGCATGCTGCAATGGTATCCAAACTATCTTGAGCTTTGTTTGATATTTATTTTAAAATTCCCAATTGTTTTTCATTACAGCCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAGACTGGTGAAAAGAGTAGTCAGGAACTTGATGAATTTGCAGAAGCTGAGGAGCTTGTGAAGGAAAAGGTGAAAAAGCTGCTGAATGCCACTCATAAATGCTGTTTTATTCTCTGAGATTTCTGCGCTTCCTAATGTCTTTAACACCAGAACATGTATTTATGAGGATGACTTCTATCTCTTTCCTGTCTCCATATTTGCATCACTTGCATCTTCAAAAATCTGGTTCTAACGATTTTATAGATGGATATTTCAGGCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCTGTAAGTATCTTCATCCGGTTGCAGCATTGTTTCTTTTGTACTTTCTTCTTCCAATAAAGAGCCAATGCAAACAGGGACAGATGTCGTGTAGATGGTAGATAGAGTGCAAGCTTCCATGACGCCAACATATATTTAATTACAAAAAATAGTTATTTGTATCATTTTTATAGTGTTCATGTAAGTTGTTTGAGTGTGACATGGAAGACTAGAACTGGTTTCTGTGGTTTTGCATTCACAACATCAAAGTCTAGAAAGTGTTATGTAACTATATCCAGTTGCTAAAGAACATCGAGGCCTGTTGTAGTTTTCAAGTTAGGAATCTTAATACTTTTTTTGCCTCCTAGGAATGGGGAGATCGATCAATGCTTG</genome_strand>
        <mrna_strand>GAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAGACTGGTGAAAAGACTAGCCAGGAACTTGATGAATTTGCAGAAGCTGAGGAGCTTGTGAAGGAAAAG...........................................................................................................................................................................................GCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCT........................................................................................................................................................................................................................................................................................................................................................GAAGGGGGAGATCGATCAATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319355" ref_strand="+" ref_description="SGN-U319355        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: AT3G24050.1 | Symbol: None | GATA transcription factor 1 (GATA-1), identical to GATA transcription factor 1 (AtGATA-1) GB:Y13648 (Arabidopsis thaliana) | chr3:8685929-8687684 FORWARD | Aliases: F14O13.7 (evalue: 4e-38, score=155) genbank/nr: gi|37572445|dbj|BAC98492.1| AG-motif binding protein-2 [Nicotiana tabacum](evalue: 1e-103, score=379)">
      <seq>atcggccgaattgctctctaacaaaatcaaaccaaacccttattccatttttttctctttcaatttctcccttttgctctctgtgtgtgaaaaaaacaatgaaaatggaggatttggacccaactgcatgtttcatggtggatgatgaccttctcaacttctctttggaagatgaaactgttgaagaagatgatgaaaaatcaactattactagcaaagacccactttcttattcttcttcgtcttcaacaaaccctcttgttagccttcttccccaccctgagtgtgtagaggaagagttggaatggctgtcaaacaaagatgcatttccagcgatagagtttggcattctttcggagaacccgggtatggtatttgatcaccatagcccggtttcagtgctggagaatagtagcagcactagtcacagcagtggcaatggtgttgttagtggaaatgcttatacgagctgctgcgtcaacttaaaagttccggttaattaccctgttcgtgcacggagcaagagaagacgtagaagacggagaggtggatttgctgacatgccaagcgagcattgtctgccggtgacacaaccgagtttcaagaacgttaagcagcgtgagccattgctttctttaccaatgaattcagctaagagtgctgctagcattgggaggaggtgccaacactgtggagccgataagaccccacaatggcgggcaggccctctggggccaaaaacactgtgtaatgcttgtggtgtgcgctataagtcaggcaggctgttaccagagtatcgcccggctaatagccctactttctcggctgctgcgcattcaaactcccaccggaaggttttggagatgagaaagcataagattggtgtgggaggaatgttgattcatgaagcttgtggatatagggtaggacagtagtgagtcatctgcagcgtcttttcagatatttttcttcatttactatagttagcatagactataggtttttgttgtaatggtcttgatggtcggtgatttgctttggttttccatcaaaatccactaggaattttgaactagtttgttttattatatgcttttaagatagaaatccagaaagaagagctcctaacaaagatttggttgtttttttaatccttccttcttacctctgtcatttgcatggattggaaatgatacatttttgaatcttgagaatgatgtttgtggcagctgctgggaatgtacttgctaagcagttttaacatttgcagaatgtggtgctcgctcgagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0022M02-UCmu7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C09HBa0022M02.1" temp_strand="+" temp_description="C09HBa0022M02.1  EU139067.1 htgs_phase:2 submitted_to_sgn_as:C09HBa0022M02 upload_account_name:spain">
        <position start="98794" stop="101756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99096" g_stop="99364" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="281" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100446" g_stop="101456" g_length="1011"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="1292" r_length="1011" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0022M02.1" gen_strand="+" ref_id="SGN-U319355" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1280</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0022M02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99096" e_stop="99364"/>
          <exon e_start="100446" e_stop="101456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTAAACAAAATCAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCTGTAAGTCACTTAAATTTCACTGATTGTTAAGTTTTTTTGTTCGATTTTCACCTTTTATACACTACCCAGAAGTTTTTATGGACCGGAAATGGTGTTTTCCGGTGAGTGAACAAAACTTCCGGGGGTTTGGAGGGTATTTTGTAAATGATGATGAAAAAGGTGGGTGGTTTTGAAACGGTTGTTGAGGGAAGACTGAGAAAGTTGATTGACTGGGTGAAAGTTGAGAGGTGTTTAGAGAGAATTGAATTTTTTTGGACTATTTTGCCCTTGTAACCCTAAGAATCATGGATGAATGACATATGGGGGACTGGTGATTAACAAAAAAAAGTTTTTTTTTTGGAATTTAATTTAATTTTTAATTAAAATTGGGACTTTTTTGTTGTTGAAAGAAATGAAATGTGGGGTTATTTTGGGAATTTTGAAATGTCTACAACATGACTTTATATTGGTTGTCACTATGTTTGAGCTGTACAAATAAATGTGCCATATCAGTTTCAACTTGCATTCCATAATGTACAAAGACATTTTTGCCCCTAACATCAATGATTATTTACACTCCATTTTGTCAAAGTTGTGAATTGTACTAGTTGGAAATATTGACTTTTTGTTTCCTTTTAGTCGAGTCGAGTGTTTATCGGAAATGACCTATCCACCTCACACAAGTACATTCCTTTTGTTGGAAAATTACATTGTGTAACTAGTTAAAAATATATTTTTTTACATTACGTATTGACACCCCTTGACGTCTAGGCGATTTTACTTATCTTTTAGTGGAAATTCGGACTCTACCGGTGCACACACGAGAAAGGTGTAAGGTCGGTGTACAATCCACCCTCTCCAGTCCCCACTTGTGGTGTCTCGCGGTGTATGTTGTTGTTCTTGTACTGTGTACAATGTCTTAAGCCTAGTACATAACTAGATTCCTTCCTAGATATTTTTTATTTTTCGATATAATCTAAATAATACAGTTAATTGATTTTTATTATAAGAAAACTTGTAAATTAAACAATTAAATTGAAAACTTGTTTGAAATAAGTGGCTTAGTTGAGATTATTATGTATTAACATATTGCATTCTGTAGGAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACTTGCTAAGCAGTTTTAACAGTTGCAGAAGGTGGTGTTCGCTCGAGATG</genome_strand>
        <mrna_strand>CTCTCT-AACAAAATCAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGCTGCTGGGAATGTACTTGCTAAGCAGTTTTAACATTTGCAGAATGTGGTGCTCGCTCGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>22</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8209" PGL_stop="1905"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8209" e_stop="8137"/>
            <exon e_start="7988" e_stop="7886"/>
            <exon e_start="6691" e_stop="6607"/>
            <exon e_start="5305" e_stop="5194"/>
            <exon e_start="5050" e_stop="4966"/>
            <exon e_start="4808" e_stop="4767"/>
            <exon e_start="4665" e_stop="4587"/>
            <exon e_start="3900" e_stop="3849"/>
            <exon e_start="3746" e_stop="3684"/>
            <exon e_start="3009" e_stop="2912"/>
            <exon e_start="2060" e_stop="2025"/>
            <exon e_start="1947" e_stop="1905"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.875" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.803" e_score="1.000"/>
          <exon-intron don_prob="0.079" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.909" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8209" e_stop="8137" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.875" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8136" i_stop="7989" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7988" e_stop="7886" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="7885" i_stop="6692" i_length="1194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6691" e_stop="6607" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.998">
            <gDNA_intron_boundary i_start="6606" i_stop="5306" i_length="1301"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5305" e_stop="5194" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.985">
            <gDNA_intron_boundary i_start="5193" i_stop="5051" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5050" e_stop="4966" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.945" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4965" i_stop="4809" i_length="157"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4808" e_stop="4767" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4766" i_stop="4666" i_length="101"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4665" e_stop="4587" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.972" acc_prob="0.862">
            <gDNA_intron_boundary i_start="4586" i_stop="3901" i_length="686"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3900" e_stop="3849" e_length="52"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.803">
            <gDNA_intron_boundary i_start="3848" i_stop="3747" i_length="102"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="3746" e_stop="3684" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.079" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3683" i_stop="3010" i_length="674"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="3009" e_stop="2912" e_length="98"/>
          </exon>
          <intron i_serial="10" don_prob="0.985" acc_prob="0.972">
            <gDNA_intron_boundary i_start="2911" i_stop="2061" i_length="851"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="2060" e_stop="2025" e_length="36"/>
          </exon>
          <intron i_serial="11" don_prob="1.000" acc_prob="0.909">
            <gDNA_intron_boundary i_start="2024" i_stop="1948" i_length="77"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="1947" e_stop="1905" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8209" stop="8137"/>
              <exon start="7988" stop="7886"/>
              <exon start="6691" stop="6607"/>
              <exon start="5305" stop="5194"/>
              <exon start="5050" stop="4966"/>
              <exon start="4808" stop="4767"/>
              <exon start="4665" stop="4587"/>
              <exon start="3900" stop="3849"/>
              <exon start="3746" stop="3684"/>
              <exon start="3009" stop="2912"/>
              <exon start="2060" stop="2025"/>
              <exon start="1947" stop="1905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCGTTTCTTACTGGAAAAATCTCTACTTTACCCTTCAAATTTTACACTGTTTCATCTTCTTCACAACAACAAG : ATGCAAACCAAAACCTGAAATCAGTGAAAATTAGAGAAGATTGGAGGAAAAAATCTCGACCTATTCCTCCTGGTGGGACTTATCCAGCTAAAGACCACTGCAG : CCACTGTGGTTTGTGTGACACTTACTACATTGCTCATGTGAATAATGCATGTGCTTTCTTGGGGGATGGCATGTCTAGAGTTGAA : GCTTTGGAACCTATTGTCCATGGACGAGGACGGAAAGAAGATTCCTTGGATGAGATTTATATGGGGGTGTATGAGAATCTATTGTATGCTCGTAAAACTAAGCCTGTGGAAG : GAGCTCAATGGACGGGGATAGTGACAACTATTGCCGTGGAGATGCTAAAAGCTGGGATGGTGGAAGCTGTTATTTGTGTTCAGAG : TGATCCAGAAGATCGATTTGCTCCTCGACCTGTCCTGGCAAG : GACTCCAGAGGAAGTTATAGCAGCTAAAGGTGTTAAGCCGACACTGTCTCCTAATCTAAATACTCTTGCCTTAGTTGAG : GCAGCTGGTGTAAAGCGCCTTCTCTTCTGCGGGGTTGGCTGCCAAGTTCAAG : CTTTAAGATCAGTGGAGCAATATTTGAATCTGGAAAAACTTTATGTTCTAGGCACTAACTGTG : TGGATAATGGACCACGAGAAGGTTTAGATAAATTTCTGAAGGCTGCTAGCAGTGAACCTGAAACAGTTCTCCACTATGAGTTTATGCAAGACTACAAG : GTCCATCTGAAGCATTTGGATGGCCATATTGAAGAG : GTTCCCTATTTCTGTTTACCAGCAAATGACTTGGTTGATGTTA</gDNA_template>
            <first_frame> A  F  L  T  G  K  I  S  T  L  P  F  K  F  Y  T  V  S  S  S  S  Q  Q  Q   : D  A  N  Q  N  L  K  S  V  K  I  R  E  D  W  R  K  K  S  R  P  I  P  P  G  G  T  Y  P  A  K  D  H  C  S :   H  C  G  L  C  D  T  Y  Y  I  A  H  V  N  N  A  C  A  F  L  G  D  G  M  S  R  V  E  :  A  L  E  P  I  V  H  G  R  G  R  K  E  D  S  L  D  E  I  Y  M  G  V  Y  E  N  L  L  Y  A  R  K  T  K  P  V  E   : G  A  Q  W  T  G  I  V  T  T  I  A  V  E  M  L  K  A  G  M  V  E  A  V  I  C  V  Q  S :   D  P  E  D  R  F  A  P  R  P  V  L  A  R :   T  P  E  E  V  I  A  A  K  G  V  K  P  T  L  S  P  N  L  N  T  L  A  L  V  E  :  A  A  G  V  K  R  L  L  F  C  G  V  G  C  Q  V  Q   : A  L  R  S  V  E  Q  Y  L  N  L  E  K  L  Y  V  L  G  T  N  C   : V  D  N  G  P  R  E  G  L  D  K  F  L  K  A  A  S  S  E  P  E  T  V  L  H  Y  E  F  M  Q  D  Y  K  :  V  H  L  K  H  L  D  G  H  I  E  E  :  V  P  Y  F  C  L  P  A  N  D  L  V  D  V  </first_frame>
            <second_frame>  R  F  L  L  E  K  S  L  L  Y  P  S  N  F  T  L  F  H  L  L  H  N  N  K  :  M  Q  T  K  T  *  N  Q  *  K  L  E  K  I  G  G  K  N  L  D  L  F  L  L  V  G  L  I  Q  L  K  T  T  A   : A  T  V  V  C  V  T  L  T  T  L  L  M  *  I  M  H  V  L  S  W  G  M  A  C  L  E  L  K :   L  W  N  L  L  S  M  D  E  D  G  K  K  I  P  W  M  R  F  I  W  G  C  M  R  I  Y  C  M  L  V  K  L  S  L  W  K  :  E  L  N  G  R  G  *  *  Q  L  L  P  W  R  C  *  K  L  G  W  W  K  L  L  F  V  F  R   : V  I  Q  K  I  D  L  L  L  D  L  S  W  Q   : G  L  Q  R  K  L  *  Q  L  K  V  L  S  R  H  C  L  L  I  *  I  L  L  P  *  L  R :   Q  L  V  *  S  A  F  S  S  A  G  L  A  A  K  F  K  :  L  *  D  Q  W  S  N  I  *  I  W  K  N  F  M  F  *  A  L  T  V  :  W  I  M  D  H  E  K  V  *  I  N  F  *  R  L  L  A  V  N  L  K  Q  F  S  T  M  S  L  C  K  T  T  R :   S  I  *  S  I  W  M  A  I  L  K  R :   F  P  I  S  V  Y  Q  Q  M  T  W  L  M  L </second_frame>
            <third_frame>   V  S  Y  W  K  N  L  Y  F  T  L  Q  I  L  H  C  F  I  F  F  T  T  T  R :   C  K  P  K  P  E  I  S  E  N  *  R  R  L  E  E  K  I  S  T  Y  S  S  W  W  D  L  S  S  *  R  P  L  Q  :  P  L  W  F  V  *  H  L  L  H  C  S  C  E  *  C  M  C  F  L  G  G  W  H  V  *  S  *   : S  F  G  T  Y  C  P  W  T  R  T  E  R  R  F  L  G  *  D  L  Y  G  G  V  *  E  S  I  V  C  S  *  N  *  A  C  G  R :   S  S  M  D  G  D  S  D  N  Y  C  R  G  D  A  K  S  W  D  G  G  S  C  Y  L  C  S  E  :  *  S  R  R  S  I  C  S  S  T  C  P  G  K  :  D  S  R  G  S  Y  S  S  *  R  C  *  A  D  T  V  S  *  S  K  Y  S  C  L  S  *   : G  S  W  C  K  A  P  S  L  L  R  G  W  L  P  S  S  S :   F  K  I  S  G  A  I  F  E  S  G  K  T  L  C  S  R  H  *  L  C :   G  *  W  T  T  R  R  F  R  *  I  S  E  G  C  *  Q  *  T  *  N  S  S  P  L  *  V  Y  A  R  L  Q   : G  P  S  E  A  F  G  W  P  Y  *  R   : G  S  L  F  L  F  T  S  K  *  L  G  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8209" stop="8137"/>
                    <exon start="7988" stop="7886"/>
                    <exon start="6691" stop="6607"/>
                    <exon start="5305" stop="5194"/>
                    <exon start="5050" stop="4966"/>
                    <exon start="4808" stop="4767"/>
                    <exon start="4665" stop="4587"/>
                    <exon start="3900" stop="3849"/>
                    <exon start="3746" stop="3684"/>
                    <exon start="3009" stop="2912"/>
                    <exon start="2060" stop="2025"/>
                    <exon start="1947" stop="1906"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFLTGKISTLPFKFYTVSSSSQQQDANQNLKSVKIREDWRKKSRPIPPGGTYPAKDHCSHCGLCDTYYIAHVNNACAFLGDGMSRVEALEPIVHGRGRKEDSLDEIYMGVYENLLYARKTKPVEGAQWTGIVTTIAVEMLKAGMVEAVICVQSDPEDRFAPRPVLARTPEEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEQYLNLEKLYVLGTNCVDNGPREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9338" PGL_stop="9035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9338" e_stop="9035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9338" e_stop="9035" e_length="304"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9338" stop="9035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9336" stop="9039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGAGCTTAGTAACGTGGGCTTGTAACCCAAGTGGGGATGTTAAGGTGGTGGAATATTGGGCTGTCCCAGATGGCTGGGCTTGGTGGGCTAATTTCTGGCCTGCCCTATCCAAGCACAGAGTTGGATCATGTGGTCCAATTGAAAGAATGGGCTACTAGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAAACTTCCGCTTTGTGCAGTGGAAGGATAACGGACCGGTGCCTTCCAAGTTCCATTAATGCCTGATGGGCTGCTCCAATTAAACCACCACTTTT</gDNA_template>
            <first_frame> V  E  L  S  N  V  G  L  *  P  K  W  G  C  *  G  G  G  I  L  G  C  P  R  W  L  G  L  V  G  *  F  L  A  C  P  I  Q  A  Q  S  W  I  M  W  S  N  *  K  N  G  L  L  D  S  *  S  G  V  D  R  V  R  L  V  S  Q  S  N  E  K  L  P  L  C  A  V  E  G  *  R  T  G  A  F  Q  V  P  L  M  P  D  G  L  L  Q  L  N  H  H  F  </first_frame>
            <second_frame>  S  S  L  V  T  W  A  C  N  P  S  G  D  V  K  V  V  E  Y  W  A  V  P  D  G  W  A  W  W  A  N  F  W  P  A  L  S  K  H  R  V  G  S  C  G  P  I  E  R  M  G  Y  *  I  P  K  V  G  W  T  A  *  G  W  F  H  R  A  T  K  N  F  R  F  V  Q  W  K  D  N  G  P  V  P  S  K  F  H  *  C  L  M  G  C  S  N  *  T  T  T  F </second_frame>
            <third_frame>   R  A  *  *  R  G  L  V  T  Q  V  G  M  L  R  W  W  N  I  G  L  S  Q  M  A  G  L  G  G  L  I  S  G  L  P  Y  P  S  T  E  L  D  H  V  V  Q  L  K  E  W  A  T  R  F  L  K  W  G  G  P  R  E  A  G  F  T  E  Q  R  K  T  S  A  L  C  S  G  R  I  T  D  R  C  L  P  S  S  I  N  A  *  W  A  A  P  I  K  P  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9324" stop="9064"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGLVTQVGMLRWWNIGLSQMAGLGGLISGLPYPSTELDHVVQLKEWATRFLKWGGPREAGFTEQRKTSALCSGRITDRCLPSSINA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14627" PGL_stop="11032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12690" e_stop="11972"/>
            <exon e_start="11551" e_stop="11032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.958"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="12690" e_stop="11972" e_length="719"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11971" i_stop="11552" i_length="420"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11551" e_stop="11032" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12690" stop="11972"/>
              <exon start="11551" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11266" stop="11032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337220" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCTCTAATTTTGTCCCATCATCTTTGTTCCCTTAAAAATCAAGGCATATTTATTAACTAATAACTAAAATATTGCACTACTTGGAATGACTACAGTTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAGGTAACTTGAACTCATGTGCTAGACAGCAACATCATTCTAATCGGCTTCACTTTTTTTGTGTGTAGTTAAGATCTTCACCTGGAACTTTGGATTTCTTTCTGTTTCCCTTTGTATCTTTGAGTAAACTACAAATGCATAGTTGGACATGGTTTCTTTGGTCATATATGGATGTCTAATTTCTAAATAGCCATCCCCTACAACATGCTCAGACATTCTTCTTAATATCCGGCCAGCTTTGTTGTAGTGTTAGCAATAGAAGTCTCCTTGCATAAGTTTTCTTGATCTTCACAGCTAGTTTGAAGGCGGATACTAATAGTTCTTCTCTCTTTATAATTGTCTTGGGGGATTTGCCTTTCTGTTCATTTTGGGTATAAAGGAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG : GTGGTGGAACGGGTATTGGGATGGATCATGAAACTATTTCCTGGAGGGCCACCAAGACGACGAACTAGCAAGCTTCTTTAATCTCCATGGCAAGCGAACAATGATGAGTTATCCCTGCGAAAAGCTGGTCTTTTTCTTCTCTCCAGCCCTGCATTTTTGTAGCCAAACGGAGTCTGGATTTTGTACATTATCCATGGTTTATACACACACATTGCATTCTTTTCCCCCAGAAGAAGCAAATTGTATCTAAGAGGCATTTTGGAAGATGGAATAGCTGTTCTCGACAGTTTTGGCAATAAAACATGACCGTGTTGTTTACAAGAGAATTCGTTTATCAAACATTGTAATGAAGATCAAGATGTGTTTTAGTTGTCAATCATGAGAGAAAAAAACTTCAAATGTTTCTTACTTTTCATGTGGAAATGATGTTTAGATCTTTTGACATTGTATTCCTTGTGTTGTATTTGTTGAAAGCTGGGGCTTAAGAAAAGCCCAATATATCAAAAAGATGATTTTGGCT</gDNA_template>
            <first_frame> S  L  *  F  C  P  I  I  F  V  P  L  K  I  K  A  Y  L  L  T  N  N  *  N  I  A  L  L  G  M  T  T  V  S  L  G  E  R  R  I  N  K  S  P  V  S  *  I  I  S  V  L  Y  I  E  G  N  L  N  S  C  A  R  Q  Q  H  H  S  N  R  L  H  F  F  C  V  *  L  R  S  S  P  G  T  L  D  F  F  L  F  P  F  V  S  L  S  K  L  Q  M  H  S  W  T  W  F  L  W  S  Y  M  D  V  *  F  L  N  S  H  P  L  Q  H  A  Q  T  F  F  L  I  S  G  Q  L  C  C  S  V  S  N  R  S  L  L  A  *  V  F  L  I  F  T  A  S  L  K  A  D  T  N  S  S  S  L  F  I  I  V  L  G  D  L  P  F  C  S  F  W  V  *  R  S  *  T  R  T  *  L  G  S  L  K  F  K  H  K  D  W  S  F  *  L  L  K  A  W  Q  M  I  T  A  K  Q  D  N  Q  M  R  Y  L  Y  M  T  I  C  H  I  L  M  R  I  C  H  M  L  M  K  E  M  R :   W  W  N  G  Y  W  D  G  S  *  N  Y  F  L  E  G  H  Q  D  D  E  L  A  S  F  F  N  L  H  G  K  R  T  M  M  S  Y  P  C  E  K  L  V  F  F  F  S  P  A  L  H  F  C  S  Q  T  E  S  G  F  C  T  L  S  M  V  Y  T  H  T  L  H  S  F  P  P  E  E  A  N  C  I  *  E  A  F  W  K  M  E  *  L  F  S  T  V  L  A  I  K  H  D  R  V  V  Y  K  R  I  R  L  S  N  I  V  M  K  I  K  M  C  F  S  C  Q  S  *  E  K  K  T  S  N  V  S  Y  F  S  C  G  N  D  V  *  I  F  *  H  C  I  P  C  V  V  F  V  E  S  W  G  L  R  K  A  Q  Y  I  K  K  M  I  L  A </first_frame>
            <second_frame>  P  S  N  F  V  P  S  S  L  F  P  *  K  S  R  H  I  Y  *  L  I  T  K  I  L  H  Y  L  E  *  L  Q  L  A  L  E  K  D  E  L  T  K  A  L  S  V  E  S  S  Q  C  S  T  L  K  V  T  *  T  H  V  L  D  S  N  I  I  L  I  G  F  T  F  F  V  C  S  *  D  L  H  L  E  L  W  I  S  F  C  F  P  L  Y  L  *  V  N  Y  K  C  I  V  G  H  G  F  F  G  H  I  W  M  S  N  F  *  I  A  I  P  Y  N  M  L  R  H  S  S  *  Y  P  A  S  F  V  V  V  L  A  I  E  V  S  L  H  K  F  S  *  S  S  Q  L  V  *  R  R  I  L  I  V  L  L  S  L  *  L  S  W  G  I  C  L  S  V  H  F  G  Y  K  G  V  K  Q  G  L  N  S  E  A  *  S  S  N  T  K  I  G  A  F  N  C  S  K  H  G  K  *  *  Q  P  S  K  T  T  R  C  G  I  C  T  *  Q  Y  A  I  F  *  *  E  Y  A  I  C  *  *  R  R  *   : G  G  G  T  G  I  G  M  D  H  E  T  I  S  W  R  A  T  K  T  T  N  *  Q  A  S  L  I  S  M  A  S  E  Q  *  *  V  I  P  A  K  S  W  S  F  S  S  L  Q  P  C  I  F  V  A  K  R  S  L  D  F  V  H  Y  P  W  F  I  H  T  H  C  I  L  F  P  Q  K  K  Q  I  V  S  K  R  H  F  G  R  W  N  S  C  S  R  Q  F  W  Q  *  N  M  T  V  L  F  T  R  E  F  V  Y  Q  T  L  *  *  R  S  R  C  V  L  V  V  N  H  E  R  K  K  L  Q  M  F  L  T  F  H  V  E  M  M  F  R  S  F  D  I  V  F  L  V  L  Y  L  L  K  A  G  A  *  E  K  P  N  I  S  K  R  *  F  W   </second_frame>
            <third_frame>   P  L  I  L  S  H  H  L  C  S  L  K  N  Q  G  I  F  I  N  *  *  L  K  Y  C  T  T  W  N  D  Y  S  *  P  W  R  K  T  N  *  Q  K  P  C  Q  L  N  H  L  S  A  L  H  *  R  *  L  E  L  M  C  *  T  A  T  S  F  *  S  A  S  L  F  L  C  V  V  K  I  F  T  W  N  F  G  F  L  S  V  S  L  C  I  F  E  *  T  T  N  A  *  L  D  M  V  S  L  V  I  Y  G  C  L  I  S  K  *  P  S  P  T  T  C  S  D  I  L  L  N  I  R  P  A  L  L  *  C  *  Q  *  K  S  P  C  I  S  F  L  D  L  H  S  *  F  E  G  G  Y  *  *  F  F  S  L  Y  N  C  L  G  G  F  A  F  L  F  I  L  G  I  K  E  L  N  K  D  L  T  R  K  L  E  V  Q  T  Q  R  L  E  L  L  T  A  Q  S  M  A  N  D  N  S  Q  A  R  Q  P  D  A  V  S  V  H  D  N  M  P  Y  S  D  E  N  M  P  Y  A  D  E  G  D  E  :  V  V  E  R  V  L  G  W  I  M  K  L  F  P  G  G  P  P  R  R  R  T  S  K  L  L  *  S  P  W  Q  A  N  N  D  E  L  S  L  R  K  A  G  L  F  L  L  S  S  P  A  F  L  *  P  N  G  V  W  I  L  Y  I  I  H  G  L  Y  T  H  I  A  F  F  S  P  R  R  S  K  L  Y  L  R  G  I  L  E  D  G  I  A  V  L  D  S  F  G  N  K  T  *  P  C  C  L  Q  E  N  S  F  I  K  H  C  N  E  D  Q  D  V  F  *  L  S  I  M  R  E  K  N  F  K  C  F  L  L  F  M  W  K  *  C  L  D  L  L  T  L  Y  S  L  C  C  I  C  *  K  L  G  L  K  K  S  P  I  Y  Q  K  D  D  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12208" stop="11972"/>
                    <exon start="11551" stop="11471"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLYNCLGGFAFLFILGIKELNKDLTRKLEVQTQRLELLTAQSMANDNSQARQPDAVSVHDNMPYSDENMPYADEGDEVVERVLGWIMKLFPGGPPRRRTSKLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14627" e_stop="14545"/>
            <exon e_start="13967" e_stop="13891"/>
            <exon e_start="13391" e_stop="13324"/>
            <exon e_start="13123" e_stop="13010"/>
            <exon e_start="12898" e_stop="12726"/>
            <exon e_start="12593" e_stop="12525"/>
            <exon e_start="12148" e_stop="11972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.382" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.855" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14627" e_stop="14545" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14544" i_stop="13968" i_length="577"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13967" e_stop="13891" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.382" acc_prob="0.978">
            <gDNA_intron_boundary i_start="13890" i_stop="13392" i_length="499"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13391" e_stop="13324" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.892">
            <gDNA_intron_boundary i_start="13323" i_stop="13124" i_length="200"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13123" e_stop="13010" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.993">
            <gDNA_intron_boundary i_start="13009" i_stop="12899" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12898" e_stop="12726" e_length="173"/>
          </exon>
          <intron i_serial="5" don_prob="0.921" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12725" i_stop="12594" i_length="132"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12593" e_stop="12525" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.918" acc_prob="0.855">
            <gDNA_intron_boundary i_start="12524" i_stop="12149" i_length="376"/>
          </intron>
          <exon e_serial="7" e_score="0.994">
            <gDNA_exon_boundary e_start="12148" e_stop="11972" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14627" stop="14545"/>
              <exon start="13967" stop="13891"/>
              <exon start="13391" stop="13324"/>
              <exon start="13123" stop="13010"/>
              <exon start="12898" stop="12726"/>
              <exon start="12593" stop="12525"/>
              <exon start="12148" stop="11972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCGAATGTACAATTGGAATGTAATGCTGCTGATGAGCGTGCCAAGTTATTGGCTTCTGAAGTGATTGGCTTGGAAGAGAAG : GCACTTCGTCTAAGATCTAATGAGCTTAAGCTGGAGAAAGAATTGGAGAAGTCACAAGCTGAAATGTCTTCTTACAA : AAAGAAAATCGCAAGCCTTGAAAAAGATCGTCAAGATCTGCAATCAACAATCGATGCTTTAAAGGAAG : AAAAGAAGCTCTTGCAATCCAAATTCCTAATAGCTTCTGCTAATGGAAAGTCAGTTGATCCTAGCAGGAATATGCCTACAAAAATAGATGTATCAACTTCTACAGAGGATCTCC : GTGAAGATAATATTGCAAGTGGCACCATAAATGATACTAATTTGGTTGGTATTGATGGCCCCACCACATCTTCCCTGCCCGATTTTGGACAGTTTAGTCTCGGAAGTTTGTCACCAGCCATTCCTCCAGATCAGATTAGGATGATCCAAAACATTAATACATTAATTTCTGAG : TTAGCCTTGGAGAAAGACGAATTAACAAAAGCCCTGTCAGTTGAATCATCTCAGTGCTCTACATTGAAG : GAGTTAAACAAGGACTTAACTCGGAAGCTTGAAGTTCAAACACAAAGATTGGAGCTTTTAACTGCTCAAAGCATGGCAAATGATAACAGCCAAGCAAGACAACCAGATGCGGTATCTGTACATGACAATATGCCATATTCTGATGAGAATATGCCATATGCTGATGAAGGAGATGAG</gDNA_template>
            <first_frame> M  R  M  Y  N  W  N  V  M  L  L  M  S  V  P  S  Y  W  L  L  K  *  L  A  W  K  R  R :   H  F  V  *  D  L  M  S  L  S  W  R  K  N  W  R  S  H  K  L  K  C  L  L  T   : K  R  K  S  Q  A  L  K  K  I  V  K  I  C  N  Q  Q  S  M  L  *  R  K  :  K  R  S  S  C  N  P  N  S  *  *  L  L  L  M  E  S  Q  L  I  L  A  G  I  C  L  Q  K  *  M  Y  Q  L  L  Q  R  I  S  :  V  K  I  I  L  Q  V  A  P  *  M  I  L  I  W  L  V  L  M  A  P  P  H  L  P  C  P  I  L  D  S  L  V  S  E  V  C  H  Q  P  F  L  Q  I  R  L  G  *  S  K  T  L  I  H  *  F  L  S :   *  P  W  R  K  T  N  *  Q  K  P  C  Q  L  N  H  L  S  A  L  H  *  R :   S  *  T  R  T  *  L  G  S  L  K  F  K  H  K  D  W  S  F  *  L  L  K  A  W  Q  M  I  T  A  K  Q  D  N  Q  M  R  Y  L  Y  M  T  I  C  H  I  L  M  R  I  C  H  M  L  M  K  E  M   </first_frame>
            <second_frame>  C  E  C  T  I  G  M  *  C  C  *  *  A  C  Q  V  I  G  F  *  S  D  W  L  G  R  E   : G  T  S  S  K  I  *  *  A  *  A  G  E  R  I  G  E  V  T  S  *  N  V  F  L  Q  :  K  E  N  R  K  P  *  K  R  S  S  R  S  A  I  N  N  R  C  F  K  G  R :   K  E  A  L  A  I  Q  I  P  N  S  F  C  *  W  K  V  S  *  S  *  Q  E  Y  A  Y  K  N  R  C  I  N  F  Y  R  G  S  P :   *  R  *  Y  C  K  W  H  H  K  *  Y  *  F  G  W  Y  *  W  P  H  H  I  F  P  A  R  F  W  T  V  *  S  R  K  F  V  T  S  H  S  S  R  S  D  *  D  D  P  K  H  *  Y  I  N  F  *   : V  S  L  G  E  R  R  I  N  K  S  P  V  S  *  I  I  S  V  L  Y  I  E   : G  V  K  Q  G  L  N  S  E  A  *  S  S  N  T  K  I  G  A  F  N  C  S  K  H  G  K  *  *  Q  P  S  K  T  T  R  C  G  I  C  T  *  Q  Y  A  I  F  *  *  E  Y  A  I  C  *  *  R  R  *  </second_frame>
            <third_frame>   A  N  V  Q  L  E  C  N  A  A  D  E  R  A  K  L  L  A  S  E  V  I  G  L  E  E  K  :  A  L  R  L  R  S  N  E  L  K  L  E  K  E  L  E  K  S  Q  A  E  M  S  S  Y  K :   K  K  I  A  S  L  E  K  D  R  Q  D  L  Q  S  T  I  D  A  L  K  E   : E  K  K  L  L  Q  S  K  F  L  I  A  S  A  N  G  K  S  V  D  P  S  R  N  M  P  T  K  I  D  V  S  T  S  T  E  D  L   : R  E  D  N  I  A  S  G  T  I  N  D  T  N  L  V  G  I  D  G  P  T  T  S  S  L  P  D  F  G  Q  F  S  L  G  S  L  S  P  A  I  P  P  D  Q  I  R  M  I  Q  N  I  N  T  L  I  S  E  :  L  A  L  E  K  D  E  L  T  K  A  L  S  V  E  S  S  Q  C  S  T  L  K  :  E  L  N  K  D  L  T  R  K  L  E  V  Q  T  Q  R  L  E  L  L  T  A  Q  S  M  A  N  D  N  S  Q  A  R  Q  P  D  A  V  S  V  H  D  N  M  P  Y  S  D  E  N  M  P  Y  A  D  E  G  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14625" stop="14545"/>
                    <exon start="13967" stop="13891"/>
                    <exon start="13391" stop="13324"/>
                    <exon start="13123" stop="13010"/>
                    <exon start="12898" stop="12726"/>
                    <exon start="12593" stop="12525"/>
                    <exon start="12148" stop="11972"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANVQLECNAADERAKLLASEVIGLEEKALRLRSNELKLEKELEKSQAEMSSYKKKIASLEKDRQDLQSTIDALKEEKKLLQSKFLIASANGKSVDPSRNMPTKIDVSTSTEDLREDNIASGTINDTNLVGIDGPTTSSLPDFGQFSLGSLSPAIPPDQIRMIQNINTLISELALEKDELTKALSVESSQCSTLKELNKDLTRKLEVQTQRLELLTAQSMANDNSQARQPDAVSVHDNMPYSDENMPYADEGDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="18971" PGL_stop="17097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18971" e_stop="18482"/>
            <exon e_start="17113" e_stop="17097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18971" e_stop="18482" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.947">
            <gDNA_intron_boundary i_start="18481" i_stop="17114" i_length="1368"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17113" e_stop="17097" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18971" stop="18482"/>
              <exon start="17113" stop="17097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTGAAGTTGGGAGAAATGTTGCTGGTGTGGGATCTAATAATTTTGTAGTGCCTGATAAAGGATACAGCCAGTTAAACAGCTCTGCTCTTCACTCAACTAAAACTTCTTCTTGGACATCGGACTCCAAGTATGATGGTTTTAGTTTTGATGCTAGAAGTTCTTCTAGTTACTCACAGATGTCCCCGCCCACAGCTGGGGCGACTGGGAGGAGAACTCCCTCTTTCCTTGATTCCATGAACATTTCAAAAGTCTCTGCTGCATCCCCTCCCTCAATCGGATCAGTTACTACAGACACATATGACTCAATGGCTTACCCTAGGGACACTCTGGGTTTATCAAGTTCTGAGAACTTAACAAATTCTTCAAAAAATTCTGGTAATGGGACTGTTCTGTACAAGCATGCTGTTGAGAAAGATATGGGCAATTTGGACAACAGACATCCATTTTATTCACAGAAGCAAAATGAAGATTTTGCTGCGTTAGAACAG : CATATTGAAGATTTAAC</gDNA_template>
            <first_frame> S  *  S  W  E  K  C  C  W  C  G  I  *  *  F  C  S  A  *  *  R  I  Q  P  V  K  Q  L  C  S  S  L  N  *  N  F  F  L  D  I  G  L  Q  V  *  W  F  *  F  *  C  *  K  F  F  *  L  L  T  D  V  P  A  H  S  W  G  D  W  E  E  N  S  L  F  P  *  F  H  E  H  F  K  S  L  C  C  I  P  S  L  N  R  I  S  Y  Y  R  H  I  *  L  N  G  L  P  *  G  H  S  G  F  I  K  F  *  E  L  N  K  F  F  K  K  F  W  *  W  D  C  S  V  Q  A  C  C  *  E  R  Y  G  Q  F  G  Q  Q  T  S  I  L  F  T  E  A  K  *  R  F  C  C  V  R  T   : A  Y  *  R  F  N </first_frame>
            <second_frame>  P  E  V  G  R  N  V  A  G  V  G  S  N  N  F  V  V  P  D  K  G  Y  S  Q  L  N  S  S  A  L  H  S  T  K  T  S  S  W  T  S  D  S  K  Y  D  G  F  S  F  D  A  R  S  S  S  S  Y  S  Q  M  S  P  P  T  A  G  A  T  G  R  R  T  P  S  F  L  D  S  M  N  I  S  K  V  S  A  A  S  P  P  S  I  G  S  V  T  T  D  T  Y  D  S  M  A  Y  P  R  D  T  L  G  L  S  S  S  E  N  L  T  N  S  S  K  N  S  G  N  G  T  V  L  Y  K  H  A  V  E  K  D  M  G  N  L  D  N  R  H  P  F  Y  S  Q  K  Q  N  E  D  F  A  A  L  E  Q  :  H  I  E  D  L   </second_frame>
            <third_frame>   L  K  L  G  E  M  L  L  V  W  D  L  I  I  L  *  C  L  I  K  D  T  A  S  *  T  A  L  L  F  T  Q  L  K  L  L  L  G  H  R  T  P  S  M  M  V  L  V  L  M  L  E  V  L  L  V  T  H  R  C  P  R  P  Q  L  G  R  L  G  G  E  L  P  L  S  L  I  P  *  T  F  Q  K  S  L  L  H  P  L  P  Q  S  D  Q  L  L  Q  T  H  M  T  Q  W  L  T  L  G  T  L  W  V  Y  Q  V  L  R  T  *  Q  I  L  Q  K  I  L  V  M  G  L  F  C  T  S  M  L  L  R  K  I  W  A  I  W  T  T  D  I  H  F  I  H  R  S  K  M  K  I  L  L  R  *  N  S :   I  L  K  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18970" stop="18482"/>
                    <exon start="17113" stop="17099"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEVGRNVAGVGSNNFVVPDKGYSQLNSSALHSTKTSSWTSDSKYDGFSFDARSSSSYSQMSPPTAGATGRRTPSFLDSMNISKVSAASPPSIGSVTTDTYDSMAYPRDTLGLSSSENLTNSSKNSGNGTVLYKHAVEKDMGNLDNRHPFYSQKQNEDFAALEQHIEDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="29088" PGL_stop="27863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29088" e_stop="28561"/>
            <exon e_start="28011" e_stop="27983"/>
            <exon e_start="27915" e_stop="27863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.966"/>
          <exon-only e_score="0.811"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29088" e_stop="28561" e_length="528"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28560" i_stop="28012" i_length="549"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="28011" e_stop="27983" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27982" i_stop="27916" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="0.811">
            <gDNA_exon_boundary e_start="27915" e_stop="27863" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29088" stop="28561"/>
              <exon start="28011" stop="27983"/>
              <exon start="27915" stop="27863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331057" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATAAAAAAATTGATTATAAGAATTTGAGTTCTCTTTCAATGGAAATTAGTTTTTCTTCCTTATTGTTTTTATCATTTTTGTTATTTTTTCATCAAACAAATGCTATTACTGTCCATATAGTTGATGGTATTGCAAAAAATGATCCCCAATTGATATTTCGCTGTAAATCTCATAAAGACGATCTCGGAACGCATCATCCCAAATTCAACGATGATTTTCATTTCTCGTTCAAAAAAGATTTTTTTTTCGAGACGGTGTTCTTTTGTCATTTCTGGTGGGGTAAAAAAAATATCTCATTTGAAGTGTATAGAGAAACTGGAGCTTGTGGGCATGAAACAGGAGGATCTAACAAAGGAATATGTTATTGGTTAGTTAAAGAAGACGGTTTTTATTTTGCTATCAATGACAATCCTCCTCCATCTTCTTTTGTTAGACAATTTGGTTGGTAAAAAAATTAATGTAATTTAATATTTGTTATCTAATTACATTATGAAATGAAAAAAGAAATTTATTATGACTATGACA : CAAAAAAAAAATAAAAAAAAAAAAAAAAA : AAAAACAAAAAAAAAAAAAAAAAACAAAAGAACAAAAAAAAAATATATATATT</gDNA_template>
            <first_frame> I  I  K  K  L  I  I  R  I  *  V  L  F  Q  W  K  L  V  F  L  P  Y  C  F  Y  H  F  C  Y  F  F  I  K  Q  M  L  L  L  S  I  *  L  M  V  L  Q  K  M  I  P  N  *  Y  F  A  V  N  L  I  K  T  I  S  E  R  I  I  P  N  S  T  M  I  F  I  S  R  S  K  K  I  F  F  S  R  R  C  S  F  V  I  S  G  G  V  K  K  I  S  H  L  K  C  I  E  K  L  E  L  V  G  M  K  Q  E  D  L  T  K  E  Y  V  I  G  *  L  K  K  T  V  F  I  L  L  S  M  T  I  L  L  H  L  L  L  L  D  N  L  V  G  K  K  I  N  V  I  *  Y  L  L  S  N  Y  I  M  K  *  K  K  K  F  I  M  T  M  T  :  Q  K  K  N  K  K  K  K  K  K :   K  T  K  K  K  K  K  N  K  R  T  K  K  K  Y  I  Y  </first_frame>
            <second_frame>  *  *  K  N  *  L  *  E  F  E  F  S  F  N  G  N  *  F  F  F  L  I  V  F  I  I  F  V  I  F  S  S  N  K  C  Y  Y  C  P  Y  S  *  W  Y  C  K  K  *  S  P  I  D  I  S  L  *  I  S  *  R  R  S  R  N  A  S  S  Q  I  Q  R  *  F  S  F  L  V  Q  K  R  F  F  F  R  D  G  V  L  L  S  F  L  V  G  *  K  K  Y  L  I  *  S  V  *  R  N  W  S  L  W  A  *  N  R  R  I  *  Q  R  N  M  L  L  V  S  *  R  R  R  F  L  F  C  Y  Q  *  Q  S  S  S  I  F  F  C  *  T  I  W  L  V  K  K  L  M  *  F  N  I  C  Y  L  I  T  L  *  N  E  K  R  N  L  L  *  L  *  H :   K  K  K  I  K  K  K  K  K   : K  K  Q  K  K  K  K  K  T  K  E  Q  K  K  N  I  Y  I </second_frame>
            <third_frame>   N  K  K  I  D  Y  K  N  L  S  S  L  S  M  E  I  S  F  S  S  L  L  F  L  S  F  L  L  F  F  H  Q  T  N  A  I  T  V  H  I  V  D  G  I  A  K  N  D  P  Q  L  I  F  R  C  K  S  H  K  D  D  L  G  T  H  H  P  K  F  N  D  D  F  H  F  S  F  K  K  D  F  F  F  E  T  V  F  F  C  H  F  W  W  G  K  K  N  I  S  F  E  V  Y  R  E  T  G  A  C  G  H  E  T  G  G  S  N  K  G  I  C  Y  W  L  V  K  E  D  G  F  Y  F  A  I  N  D  N  P  P  P  S  S  F  V  R  Q  F  G  W  *  K  N  *  C  N  L  I  F  V  I  *  L  H  Y  E  M  K  K  E  I  Y  Y  D  Y  D   : T  K  K  K  *  K  K  K  K  K  :  K  N  K  K  K  K  K  K  Q  K  N  K  K  K  I  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29086" stop="28637"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKKIDYKNLSSLSMEISFSSLLFLSFLLFFHQTNAITVHIVDGIAKNDPQLIFRCKSHKDDLGTHHPKFNDDFHFSFKKDFFFETVFFCHFWWGKKNISFEVYRETGACGHETGGSNKGICYWLVKEDGFYFAINDNPPPSSFVRQFGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39515" PGL_stop="39804"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39515" e_stop="39804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39515" e_stop="39804" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39515" stop="39804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACACCCTTTTACTAATCACCTCCAATGACAGAAACCAGAACCTGCGAGTTTGGTCATATAAAGAAGACCACCATGAGTAGTGAAGATGGGGTTTCTGGGTTGCCCTGTTTTGGGGTTGAAGATGATAAAGGTGGAATCTTGGAAGATCGGTTTGCAGAAAAAGGGAAGAAGAAAAGGAGAATTTGTGAAATGGGTTGGTTGAGTGATCCATTAGTTGTTCTTGGGACAGATGTTATGTTGATGATTTTGAGCTGTCTAGACGCACGCAGCGTGGCACTGTGTCTCCT</gDNA_template>
            <first_frame> W  T  P  F  Y  *  S  P  P  M  T  E  T  R  T  C  E  F  G  H  I  K  K  T  T  M  S  S  E  D  G  V  S  G  L  P  C  F  G  V  E  D  D  K  G  G  I  L  E  D  R  F  A  E  K  G  K  K  K  R  R  I  C  E  M  G  W  L  S  D  P  L  V  V  L  G  T  D  V  M  L  M  I  L  S  C  L  D  A  R  S  V  A  L  C  L   </first_frame>
            <second_frame>  G  H  P  F  T  N  H  L  Q  *  Q  K  P  E  P  A  S  L  V  I  *  R  R  P  P  *  V  V  K  M  G  F  L  G  C  P  V  L  G  L  K  M  I  K  V  E  S  W  K  I  G  L  Q  K  K  G  R  R  K  G  E  F  V  K  W  V  G  *  V  I  H  *  L  F  L  G  Q  M  L  C  *  *  F  *  A  V  *  T  H  A  A  W  H  C  V  S  </second_frame>
            <third_frame>   D  T  L  L  L  I  T  S  N  D  R  N  Q  N  L  R  V  W  S  Y  K  E  D  H  H  E  *  *  R  W  G  F  W  V  A  L  F  W  G  *  R  *  *  R  W  N  L  G  R  S  V  C  R  K  R  E  E  E  K  E  N  L  *  N  G  L  V  E  *  S  I  S  C  S  W  D  R  C  Y  V  D  D  F  E  L  S  R  R  T  Q  R  G  T  V  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39533" stop="39802"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPPMTETRTCEFGHIKKTTMSSEDGVSGLPCFGVEDDKGGILEDRFAEKGKKKRRICEMGWLSDPLVVLGTDVMLMILSCLDARSVALCL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42808" PGL_stop="43777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42808" e_stop="43777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42808" e_stop="43777" e_length="970"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42808" stop="43777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327218" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTATCCACCCATATAAATCATGCATGGCTGCAGCTCGCACCAAATTGAGTAGATATAGTTTGTACGTGCTTGAGAAAACTTAAATCTGTACGATTGAAGTTAAAACGTCCGTTTGAGGGTCGGTCTTTGTGTAGCTTTGCAAGTAGTTGGTAAGACTGCATAATACCTTCATTTCTTGTTCATTATGTTTAACTTTTTGTTCTTCACTGGTCAGTTTCATAGAGCTTTTGCCAAAATTGAAAACGGTTTGCATGGTTCTGTATCCTGTAAGTGCTATTTGAACCACTTCTGCTGCTGCCTTTGATTGCTATTTCTTCACAGTTTAATGCATCTGGATTCAATAAAGCTTTGATTGGAAACTAGAGGAAGGAAGAGAAGTTTTTTGGTTTGACAAGAGAGTGAAAAAAACGAAGTGAAGCAGATTTCCCTCTTTCCTTTCGCTAGTTTCCGTCATAGGATAACAAAGATAAAACATAATCCTTGTATAACTACAACCTATACTACTTGTGTGGACGAATCCTTAGGCGGCTCCTGAGTACTGGCGAATGCTCGATCCCTACAGGAATGGAACTGGACGTCCCCTGCGCCGTTATTTTCTTCCAGATGGAAGTCAGACTGCAGAACCAGATGACAAGATATGGGGTGGTCATGAATCTTGCTACTCCATAGTAACTAGCTTGCTTGCAGATGGAAATATAAGAGAACACTACGTGAGGATAAACCGTTGGCCGCCTATGTATGTGACAAGGAAGGAAGATTGGAGCTGGGAGATCTCTAACAACTTTTGTACCTACAAGAGCATACCAGATGCTGATAAAAAAGATGGCACTGGACCTTTGTTTCTACTTCACTAGGCCTCTACAGTAGTTTCTACTTTGAAGCCAAACTATGGAGATGTTTGTTTGAATAATTGTAAGGCCTTTTGTAAAGTATATTTTGTTGATATTAATAAGTTTTGCAAGTTTTA</gDNA_template>
            <first_frame> A  L  S  T  H  I  N  H  A  W  L  Q  L  A  P  N  *  V  D  I  V  C  T  C  L  R  K  L  K  S  V  R  L  K  L  K  R  P  F  E  G  R  S  L  C  S  F  A  S  S  W  *  D  C  I  I  P  S  F  L  V  H  Y  V  *  L  F  V  L  H  W  S  V  S  *  S  F  C  Q  N  *  K  R  F  A  W  F  C  I  L  *  V  L  F  E  P  L  L  L  L  P  L  I  A  I  S  S  Q  F  N  A  S  G  F  N  K  A  L  I  G  N  *  R  K  E  E  K  F  F  G  L  T  R  E  *  K  K  R  S  E  A  D  F  P  L  S  F  R  *  F  P  S  *  D  N  K  D  K  T  *  S  L  Y  N  Y  N  L  Y  Y  L  C  G  R  I  L  R  R  L  L  S  T  G  E  C  S  I  P  T  G  M  E  L  D  V  P  C  A  V  I  F  F  Q  M  E  V  R  L  Q  N  Q  M  T  R  Y  G  V  V  M  N  L  A  T  P  *  *  L  A  C  L  Q  M  E  I  *  E  N  T  T  *  G  *  T  V  G  R  L  C  M  *  Q  G  R  K  I  G  A  G  R  S  L  T  T  F  V  P  T  R  A  Y  Q  M  L  I  K  K  M  A  L  D  L  C  F  Y  F  T  R  P  L  Q  *  F  L  L  *  S  Q  T  M  E  M  F  V  *  I  I  V  R  P  F  V  K  Y  I  L  L  I  L  I  S  F  A  S  F  </first_frame>
            <second_frame>  H  Y  P  P  I  *  I  M  H  G  C  S  S  H  Q  I  E  *  I  *  F  V  R  A  *  E  N  L  N  L  Y  D  *  S  *  N  V  R  L  R  V  G  L  C  V  A  L  Q  V  V  G  K  T  A  *  Y  L  H  F  L  F  I  M  F  N  F  L  F  F  T  G  Q  F  H  R  A  F  A  K  I  E  N  G  L  H  G  S  V  S  C  K  C  Y  L  N  H  F  C  C  C  L  *  L  L  F  L  H  S  L  M  H  L  D  S  I  K  L  *  L  E  T  R  G  R  K  R  S  F  L  V  *  Q  E  S  E  K  N  E  V  K  Q  I  S  L  F  P  F  A  S  F  R  H  R  I  T  K  I  K  H  N  P  C  I  T  T  T  Y  T  T  C  V  D  E  S  L  G  G  S  *  V  L  A  N  A  R  S  L  Q  E  W  N  W  T  S  P  A  P  L  F  S  S  R  W  K  S  D  C  R  T  R  *  Q  D  M  G  W  S  *  I  L  L  L  H  S  N  *  L  A  C  R  W  K  Y  K  R  T  L  R  E  D  K  P  L  A  A  Y  V  C  D  K  E  G  R  L  E  L  G  D  L  *  Q  L  L  Y  L  Q  E  H  T  R  C  *  *  K  R  W  H  W  T  F  V  S  T  S  L  G  L  Y  S  S  F  Y  F  E  A  K  L  W  R  C  L  F  E  *  L  *  G  L  L  *  S  I  F  C  *  Y  *  *  V  L  Q  V  L </second_frame>
            <third_frame>   I  I  H  P  Y  K  S  C  M  A  A  A  R  T  K  L  S  R  Y  S  L  Y  V  L  E  K  T  *  I  C  T  I  E  V  K  T  S  V  *  G  S  V  F  V  *  L  C  K  *  L  V  R  L  H  N  T  F  I  S  C  S  L  C  L  T  F  C  S  S  L  V  S  F  I  E  L  L  P  K  L  K  T  V  C  M  V  L  Y  P  V  S  A  I  *  T  T  S  A  A  A  F  D  C  Y  F  F  T  V  *  C  I  W  I  Q  *  S  F  D  W  K  L  E  E  G  R  E  V  F  W  F  D  K  R  V  K  K  T  K  *  S  R  F  P  S  F  L  S  L  V  S  V  I  G  *  Q  R  *  N  I  I  L  V  *  L  Q  P  I  L  L  V  W  T  N  P  *  A  A  P  E  Y  W  R  M  L  D  P  Y  R  N  G  T  G  R  P  L  R  R  Y  F  L  P  D  G  S  Q  T  A  E  P  D  D  K  I  W  G  G  H  E  S  C  Y  S  I  V  T  S  L  L  A  D  G  N  I  R  E  H  Y  V  R  I  N  R  W  P  P  M  Y  V  T  R  K  E  D  W  S  W  E  I  S  N  N  F  C  T  Y  K  S  I  P  D  A  D  K  K  D  G  T  G  P  L  F  L  L  H  *  A  S  T  V  V  S  T  L  K  P  N  Y  G  D  V  C  L  N  N  C  K  A  F  C  K  V  Y  F  V  D  I  N  K  F  C  K  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43335" stop="43664"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAPEYWRMLDPYRNGTGRPLRRYFLPDGSQTAEPDDKIWGGHESCYSIVTSLLADGNIREHYVRINRWPPMYVTRKEDWSWEISNNFCTYKSIPDADKKDGTGPLFLLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="48418" PGL_stop="44058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48418" e_stop="48109"/>
            <exon e_start="44716" e_stop="44645"/>
            <exon e_start="44541" e_stop="44058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.965" e_score="0.984"/>
          <exon-intron don_prob="0.071" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="48418" e_stop="48109" e_length="310"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.965">
            <gDNA_intron_boundary i_start="48108" i_stop="44717" i_length="3392"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44716" e_stop="44645" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.071" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44644" i_stop="44542" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44541" e_stop="44058" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48418" stop="48109"/>
              <exon start="44716" stop="44645"/>
              <exon start="44541" stop="44058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTCTCCATTGAATCGCCATCACTGTAGCCCTGTAAAGCAGCTCAAAATTACAGTGTTCCGGCACAGAGGGAAAATCACACTGTAGGAAAAATGACGGAGGCAATGATAAGGAAGAAAGCCGGAATGGCTAGCGTGAAAGACATGCCCTTATTGCAAGATGGTCCACCACCAGGCGGTTTTGCACCGGTTCGATTCGCTCGCCGGATCCCTAACACTGGTCCAAGTGCTATGGCTATTTTCCTTACTGCTTTTGGTGTTTTCTCATGGGGTATGTACCAAGTCGGCGTAGGAAATAAGAAGCGAAG : GGTGATAAAGGAAGAAAAATATGCTGCCCGAAGGGCTATATTACCCATGCTTCAAGCTGAAGAAGATGAAAG : ATTTGTTAAAGAGTGGAAGAAGTATCTTGAAGAAGAGGCGAGAATCATGAAGGATGTTCCCGGTTGGAAAGTTGGTGAAAGTGTTTACAACTCTGGGAAATGGATGCCTCCAGCAACTGGAGAGCTTCGTCCTGATGTCTGGTAAGAGATGCTGGTAAAGCTTCCAGGACATGCAGCACGAAAAACTGGTTCATGTCAGTGGAGGTCATACTTTCTTTCGGATTTCTTTCCTCATTGGAATAAAATTGTATCTGCAAAATCTGTGCAACATGTTTAAGATGATTGCTTTAACGCTATTAGCATTACGAGTTGGGATCATAAGAGACAATGCAACTTCATGTTTCTCTTATAGTTGATTCAGATCGTTTTTTAATGAATAGGCGTCCTTCATCATCCATCTTCTCAATGTGTTTTCATCCAATTACAATATGGAAGTGGCTTTTCCAGTTGCCTCAAAACACTAGAGAAGCCAAATCTAGCAGAA</gDNA_template>
            <first_frame> F  S  S  P  L  N  R  H  H  C  S  P  V  K  Q  L  K  I  T  V  F  R  H  R  G  K  I  T  L  *  E  K  *  R  R  Q  *  *  G  R  K  P  E  W  L  A  *  K  T  C  P  Y  C  K  M  V  H  H  Q  A  V  L  H  R  F  D  S  L  A  G  S  L  T  L  V  Q  V  L  W  L  F  S  L  L  L  L  V  F  S  H  G  V  C  T  K  S  A  *  E  I  R  S  E   : G  *  *  R  K  K  N  M  L  P  E  G  L  Y  Y  P  C  F  K  L  K  K  M  K   : D  L  L  K  S  G  R  S  I  L  K  K  R  R  E  S  *  R  M  F  P  V  G  K  L  V  K  V  F  T  T  L  G  N  G  C  L  Q  Q  L  E  S  F  V  L  M  S  G  K  R  C  W  *  S  F  Q  D  M  Q  H  E  K  L  V  H  V  S  G  G  H  T  F  F  R  I  S  F  L  I  G  I  K  L  Y  L  Q  N  L  C  N  M  F  K  M  I  A  L  T  L  L  A  L  R  V  G  I  I  R  D  N  A  T  S  C  F  S  Y  S  *  F  R  S  F  F  N  E  *  A  S  F  I  I  H  L  L  N  V  F  S  S  N  Y  N  M  E  V  A  F  P  V  A  S  K  H  *  R  S  Q  I  *  Q   </first_frame>
            <second_frame>  F  L  L  H  *  I  A  I  T  V  A  L  *  S  S  S  K  L  Q  C  S  G  T  E  G  K  S  H  C  R  K  N  D  G  G  N  D  K  E  E  S  R  N  G  *  R  E  R  H  A  L  I  A  R  W  S  T  T  R  R  F  C  T  G  S  I  R  S  P  D  P  *  H  W  S  K  C  Y  G  Y  F  P  Y  C  F  W  C  F  L  M  G  Y  V  P  S  R  R  R  K  *  E  A  K  :  G  D  K  G  R  K  I  C  C  P  K  G  Y  I  T  H  A  S  S  *  R  R  *  K  :  I  C  *  R  V  E  E  V  S  *  R  R  G  E  N  H  E  G  C  S  R  L  E  S  W  *  K  C  L  Q  L  W  E  M  D  A  S  S  N  W  R  A  S  S  *  C  L  V  R  D  A  G  K  A  S  R  T  C  S  T  K  N  W  F  M  S  V  E  V  I  L  S  F  G  F  L  S  S  L  E  *  N  C  I  C  K  I  C  A  T  C  L  R  *  L  L  *  R  Y  *  H  Y  E  L  G  S  *  E  T  M  Q  L  H  V  S  L  I  V  D  S  D  R  F  L  M  N  R  R  P  S  S  S  I  F  S  M  C  F  H  P  I  T  I  W  K  W  L  F  Q  L  P  Q  N  T  R  E  A  K  S  S  R  </second_frame>
            <third_frame>   F  F  S  I  E  S  P  S  L  *  P  C  K  A  A  Q  N  Y  S  V  P  A  Q  R  E  N  H  T  V  G  K  M  T  E  A  M  I  R  K  K  A  G  M  A  S  V  K  D  M  P  L  L  Q  D  G  P  P  P  G  G  F  A  P  V  R  F  A  R  R  I  P  N  T  G  P  S  A  M  A  I  F  L  T  A  F  G  V  F  S  W  G  M  Y  Q  V  G  V  G  N  K  K  R  R :   V  I  K  E  E  K  Y  A  A  R  R  A  I  L  P  M  L  Q  A  E  E  D  E  R :   F  V  K  E  W  K  K  Y  L  E  E  E  A  R  I  M  K  D  V  P  G  W  K  V  G  E  S  V  Y  N  S  G  K  W  M  P  P  A  T  G  E  L  R  P  D  V  W  *  E  M  L  V  K  L  P  G  H  A  A  R  K  T  G  S  C  Q  W  R  S  Y  F  L  S  D  F  F  P  H  W  N  K  I  V  S  A  K  S  V  Q  H  V  *  D  D  C  F  N  A  I  S  I  T  S  W  D  H  K  R  Q  C  N  F  M  F  L  L  *  L  I  Q  I  V  F  *  *  I  G  V  L  H  H  P  S  S  Q  C  V  F  I  Q  L  Q  Y  G  S  G  F  S  S  C  L  K  T  L  E  K  P  N  L  A  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48386" stop="48109"/>
                    <exon start="44716" stop="44645"/>
                    <exon start="44541" stop="44397"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCKAAQNYSVPAQRENHTVGKMTEAMIRKKAGMASVKDMPLLQDGPPPGGFAPVRFARRIPNTGPSAMAIFLTAFGVFSWGMYQVGVGNKKRRVIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVGESVYNSGKWMPPATGELRPDVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44383" stop="44186"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQDMQHEKLVHVSGGHTFFRISFLIGIKLYLQNLCNMFKMIALTLLALRVGIIRDNATSCFSYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49778" PGL_stop="55528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49778" e_stop="49942"/>
            <exon e_start="50050" e_stop="50074"/>
            <exon e_start="50159" e_stop="50290"/>
            <exon e_start="51432" e_stop="51591"/>
            <exon e_start="51718" e_stop="51893"/>
            <exon e_start="52235" e_stop="52330"/>
            <exon e_start="52704" e_stop="52808"/>
            <exon e_start="52931" e_stop="53017"/>
            <exon e_start="53111" e_stop="53200"/>
            <exon e_start="53289" e_stop="53369"/>
            <exon e_start="53460" e_stop="53528"/>
            <exon e_start="53724" e_stop="53801"/>
            <exon e_start="53893" e_stop="53988"/>
            <exon e_start="54128" e_stop="54227"/>
            <exon e_start="54308" e_stop="54411"/>
            <exon e_start="54530" e_stop="54714"/>
            <exon e_start="54819" e_stop="55155"/>
            <exon e_start="55494" e_stop="55528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.988"/>
          <exon-intron don_prob="0.310" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.418" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.632" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.335" e_score="0.970"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="49778" e_stop="49942" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49943" i_stop="50049" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50050" e_stop="50074" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.310" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50075" i_stop="50158" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50159" e_stop="50290" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="50291" i_stop="51431" i_length="1141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51432" e_stop="51591" e_length="160"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="51592" i_stop="51717" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51718" e_stop="51893" e_length="176"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="51894" i_stop="52234" i_length="341"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52235" e_stop="52330" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="52331" i_stop="52703" i_length="373"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="52704" e_stop="52808" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.418" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52809" i_stop="52930" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52931" e_stop="53017" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53018" i_stop="53110" i_length="93"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53111" e_stop="53200" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53201" i_stop="53288" i_length="88"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="53289" e_stop="53369" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.796" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53370" i_stop="53459" i_length="90"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="53460" e_stop="53528" e_length="69"/>
          </exon>
          <intron i_serial="11" don_prob="0.956" acc_prob="0.997">
            <gDNA_intron_boundary i_start="53529" i_stop="53723" i_length="195"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="53724" e_stop="53801" e_length="78"/>
          </exon>
          <intron i_serial="12" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53802" i_stop="53892" i_length="91"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="53893" e_stop="53988" e_length="96"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53989" i_stop="54127" i_length="139"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="54128" e_stop="54227" e_length="100"/>
          </exon>
          <intron i_serial="14" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="54228" i_stop="54307" i_length="80"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="54308" e_stop="54411" e_length="104"/>
          </exon>
          <intron i_serial="15" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54412" i_stop="54529" i_length="118"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="54530" e_stop="54714" e_length="185"/>
          </exon>
          <intron i_serial="16" don_prob="0.999" acc_prob="0.632">
            <gDNA_intron_boundary i_start="54715" i_stop="54818" i_length="104"/>
          </intron>
          <exon e_serial="17" e_score="0.970">
            <gDNA_exon_boundary e_start="54819" e_stop="55155" e_length="337"/>
          </exon>
          <intron i_serial="17" don_prob="0.000" acc_prob="0.335">
            <gDNA_intron_boundary i_start="55156" i_stop="55493" i_length="338"/>
          </intron>
          <exon e_serial="18" e_score="0.571">
            <gDNA_exon_boundary e_start="55494" e_stop="55528" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49778" stop="49942"/>
              <exon start="50050" stop="50074"/>
              <exon start="50159" stop="50290"/>
              <exon start="51432" stop="51591"/>
              <exon start="51718" stop="51893"/>
              <exon start="52235" stop="52330"/>
              <exon start="52704" stop="52808"/>
              <exon start="52931" stop="53017"/>
              <exon start="53111" stop="53200"/>
              <exon start="53289" stop="53369"/>
              <exon start="53460" stop="53528"/>
              <exon start="53724" stop="53801"/>
              <exon start="53893" stop="53988"/>
              <exon start="54128" stop="54227"/>
              <exon start="54308" stop="54411"/>
              <exon start="54530" stop="54714"/>
              <exon start="54819" stop="55155"/>
              <exon start="55494" stop="55528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGGATCTTCTAGGCCCTTCTTCACTAAATTAAATACCTTTGAAGCTTCTTCTTCATCCCCACTTCTCTCTTTGTACTTCAAAATCCCTTTCCACTTTCACTTTCAGCAGCATTTCTCAGCTTCAAAATGTATCGTTTTGCAGCAAATCTTGCTTCTAAAGCCAG : TGTTGCAAGAACCAGTTCCCAAAAG : ATTGGTGGGAGGTTGAATTGGAGTAGAAACTATGCTGCAAAGGATATCAGATTTGGAGTTGAAGCTAGAGCTTTGATGCTTCAAGGTGTTGAGCAGCTTGCTGATGCTGTTAAAGTCACTATGGGTCCAAAG : GGGCGTAATGTGGTGATTGAACAAAGTTGGGGTGCACCCAAAGTGACAAAAGATGGCGTGACTGTTGCAAAAAGTATTGAATTCAAGGACAAGATACAAAATGTTGGTGCTAGCCTTGTAAAACAAGTCGCCAATGCAACAAATGATGTTGCTGGTGATG : GTACCACTTGTGCAACAGTTCTCACCCGAGCAATATTTGCTGAAGGATGCAAGTCAGTGGCAGCTGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCTGTAGATTCTGTTGTGACAAACCTGAAAAGCAGAGCACGGATGATCAGTACATCTGAGGAAATTGCACAG : GTTGGGACTATCTCTGCAAACGGAGAAAGAGTAATTGGCGACCTCATTGCAAGGGCAATGGAGAAAGTAGGCAAGGAGGGAGTCATCACTATTCAA : GACGGGAAGACATTGCTCAATGAGTTGGATGTTGTTGAAGGGATGAAGTTGGATAGAGGTTACATATCACCATACTTCATCACAAATCAGAAGAATCAGAAATGT : GAACTGGATAACCCACTAATTCTGATTCATGAGAAAAAGATCTCAAGCATTAATGCTGTTGTGAAAGCATTGGAGTTAGCTCTGAAG : AGACAAAGGCCCCTCTTAATTGTGGCTGAAGATGTGGACAATGAAGCACTCGCCACTCTTATTTTGAACAAACTCCGTGCTGGAATCAAG : GTTTGTGCCATCAAAGCACCAGGCTTTGGTGAAAACAGGAAAGCTTATTTGCAAGATCTTGCTATTTTAACTGGAGGCCAA : GTCATAACAGAAGAGCTTGGACTGAACATTGAAAATTTGGAGTTCGAGATGCTGGGAACAAGTAAAGAG : GCAACTATCTCTAAGGATGATACTGTCATTCTTGATGGTGCTGGTGAGAAGAAGTCCATCGAGGAACGATGCGAACTG : ATTAGATCAACCATTGAACAGAGCACATCTGACTATGACAAGGAGAAGTTGCAGGAAAGACTAGCTAAGCTTTCAGGGGGTGTTGCTGTGTTAAAG : ATTGGAGGAGCCAGTGAAGCTGAGGTTGGTGAAAAGAAAGATAGAGTAACTGATGCTTTGAACGCCACAAAGGCTGCAGTGGAGGAAGGAATTGTTCCAG : GTGGTGGTGTTGCTCTTCTTTATGCAGCAAGAGAATTGGATAATTTGACAACAGCCAACTTTGACCAGAAGATTGGTGTACAAATTATTCAGAATGCTCTGAAG : ACGCCAGTACATACAATAGCCTCTAACGCAGGAGTAGAGGGTGCTGTCGTGGTTGGCAAATTGTTGGATCAGGACAACCTTGATCTTGGATATGATGCGGCCAAGGGTGAATATGTAGATATGATAAAGGCAGGAATCATCGATCCAGTGAAAGTGATCAGGACAGCTTTGGTCGATGCTGCCAG : TGTCTCGTCTCTTTTGACCACAACTGAAGCAGTTGTTGTCGAGCTTCCTAAGGACGAGAAGGAATCTCCTGCAATGGGTGGCGGTATGGGTGGTGGTATGGGTGGCATGGACTTCTGATTGAAAAGCCAAAAACAGTAATTGCAGCTGCTTGACACATTTGGTTTATAGAACAAAGCAAAAAAATAAATTTAGATTTATTTCCTATTTTGATGAATCTTTTTACGATAGAAAACGCGCCTATTGTATCAATAGCAAGAGAGACAAGACCATTGTGAATTCATGTTTTTGTAGGTTCAAAATTTGTAGTCTTCATTTGAATACGCAGCTTAAATATAG : CTTAAGAAAACTTCTGGCTCGTGGAATTAGGGGTG</gDNA_template>
            <first_frame> W  D  L  L  G  P  S  S  L  N  *  I  P  L  K  L  L  L  H  P  H  F  S  L  C  T  S  K  S  L  S  T  F  T  F  S  S  I  S  Q  L  Q  N  V  S  F  C  S  K  S  C  F  *  S  Q  :  C  C  K  N  Q  F  P  K   : D  W  W  E  V  E  L  E  *  K  L  C  C  K  G  Y  Q  I  W  S  *  S  *  S  F  D  A  S  R  C  *  A  A  C  *  C  C  *  S  H  Y  G  S  K   : G  A  *  C  G  D  *  T  K  L  G  C  T  Q  S  D  K  R  W  R  D  C  C  K  K  Y  *  I  Q  G  Q  D  T  K  C  W  C  *  P  C  K  T  S  R  Q  C  N  K  *  C  C  W  *  W :   Y  H  L  C  N  S  S  H  P  S  N  I  C  *  R  M  Q  V  S  G  S  W  Y  E  C  N  G  P  *  T  G  Y  Y  H  G  C  R  F  C  C  D  K  P  E  K  Q  S  T  D  D  Q  Y  I  *  G  N  C  T   : G  W  D  Y  L  C  K  R  R  K  S  N  W  R  P  H  C  K  G  N  G  E  S  R  Q  G  G  S  H  H  Y  S   : R  R  E  D  I  A  Q  *  V  G  C  C  *  R  D  E  V  G  *  R  L  H  I  T  I  L  H  H  K  S  E  E  S  E  M   : *  T  G  *  P  T  N  S  D  S  *  E  K  D  L  K  H  *  C  C  C  E  S  I  G  V  S  S  E   : E  T  K  A  P  L  N  C  G  *  R  C  G  Q  *  S  T  R  H  S  Y  F  E  Q  T  P  C  W  N  Q   : G  L  C  H  Q  S  T  R  L  W  *  K  Q  E  S  L  F  A  R  S  C  Y  F  N  W  R  P   : S  H  N  R  R  A  W  T  E  H  *  K  F  G  V  R  D  A  G  N  K  *  R   : G  N  Y  L  *  G  *  Y  C  H  S  *  W  C  W  *  E  E  V  H  R  G  T  M  R  T   : D  *  I  N  H  *  T  E  H  I  *  L  *  Q  G  E  V  A  G  K  T  S  *  A  F  R  G  C  C  C  V  K   : D  W  R  S  Q  *  S  *  G  W  *  K  E  R  *  S  N  *  C  F  E  R  H  K  G  C  S  G  G  R  N  C  S  R :   W  W  C  C  S  S  L  C  S  K  R  I  G  *  F  D  N  S  Q  L  *  P  E  D  W  C  T  N  Y  S  E  C  S  E   : D  A  S  T  Y  N  S  L  *  R  R  S  R  G  C  C  R  G  W  Q  I  V  G  S  G  Q  P  *  S  W  I  *  C  G  Q  G  *  I  C  R  Y  D  K  G  R  N  H  R  S  S  E  S  D  Q  D  S  F  G  R  C  C  Q  :  C  L  V  S  F  D  H  N  *  S  S  C  C  R  A  S  *  G  R  E  G  I  S  C  N  G  W  R  Y  G  W  W  Y  G  W  H  G  L  L  I  E  K  P  K  T  V  I  A  A  A  *  H  I  W  F  I  E  Q  S  K  K  I  N  L  D  L  F  P  I  L  M  N  L  F  T  I  E  N  A  P  I  V  S  I  A  R  E  T  R  P  L  *  I  H  V  F  V  G  S  K  F  V  V  F  I  *  I  R  S  L  N  I   : A  *  E  N  F  W  L  V  E  L  G  V </first_frame>
            <second_frame>  G  I  F  *  A  L  L  H  *  I  K  Y  L  *  S  F  F  F  I  P  T  S  L  F  V  L  Q  N  P  F  P  L  S  L  S  A  A  F  L  S  F  K  M  Y  R  F  A  A  N  L  A  S  K  A  S :   V  A  R  T  S  S  Q  K  :  I  G  G  R  L  N  W  S  R  N  Y  A  A  K  D  I  R  F  G  V  E  A  R  A  L  M  L  Q  G  V  E  Q  L  A  D  A  V  K  V  T  M  G  P  K  :  G  R  N  V  V  I  E  Q  S  W  G  A  P  K  V  T  K  D  G  V  T  V  A  K  S  I  E  F  K  D  K  I  Q  N  V  G  A  S  L  V  K  Q  V  A  N  A  T  N  D  V  A  G  D   : G  T  T  C  A  T  V  L  T  R  A  I  F  A  E  G  C  K  S  V  A  A  G  M  N  A  M  D  L  R  R  G  I  T  M  A  V  D  S  V  V  T  N  L  K  S  R  A  R  M  I  S  T  S  E  E  I  A  Q  :  V  G  T  I  S  A  N  G  E  R  V  I  G  D  L  I  A  R  A  M  E  K  V  G  K  E  G  V  I  T  I  Q  :  D  G  K  T  L  L  N  E  L  D  V  V  E  G  M  K  L  D  R  G  Y  I  S  P  Y  F  I  T  N  Q  K  N  Q  K  C  :  E  L  D  N  P  L  I  L  I  H  E  K  K  I  S  S  I  N  A  V  V  K  A  L  E  L  A  L  K  :  R  Q  R  P  L  L  I  V  A  E  D  V  D  N  E  A  L  A  T  L  I  L  N  K  L  R  A  G  I  K  :  V  C  A  I  K  A  P  G  F  G  E  N  R  K  A  Y  L  Q  D  L  A  I  L  T  G  G  Q  :  V  I  T  E  E  L  G  L  N  I  E  N  L  E  F  E  M  L  G  T  S  K  E  :  A  T  I  S  K  D  D  T  V  I  L  D  G  A  G  E  K  K  S  I  E  E  R  C  E  L  :  I  R  S  T  I  E  Q  S  T  S  D  Y  D  K  E  K  L  Q  E  R  L  A  K  L  S  G  G  V  A  V  L  K  :  I  G  G  A  S  E  A  E  V  G  E  K  K  D  R  V  T  D  A  L  N  A  T  K  A  A  V  E  E  G  I  V  P   : G  G  G  V  A  L  L  Y  A  A  R  E  L  D  N  L  T  T  A  N  F  D  Q  K  I  G  V  Q  I  I  Q  N  A  L  K  :  T  P  V  H  T  I  A  S  N  A  G  V  E  G  A  V  V  V  G  K  L  L  D  Q  D  N  L  D  L  G  Y  D  A  A  K  G  E  Y  V  D  M  I  K  A  G  I  I  D  P  V  K  V  I  R  T  A  L  V  D  A  A  S :   V  S  S  L  L  T  T  T  E  A  V  V  V  E  L  P  K  D  E  K  E  S  P  A  M  G  G  G  M  G  G  G  M  G  G  M  D  F  *  L  K  S  Q  K  Q  *  L  Q  L  L  D  T  F  G  L  *  N  K  A  K  K  *  I  *  I  Y  F  L  F  *  *  I  F  L  R  *  K  T  R  L  L  Y  Q  *  Q  E  R  Q  D  H  C  E  F  M  F  L  *  V  Q  N  L  *  S  S  F  E  Y  A  A  *  I  *  :  L  K  K  T  S  G  S  W  N  *  G   </second_frame>
            <third_frame>   G  S  S  R  P  F  F  T  K  L  N  T  F  E  A  S  S  S  S  P  L  L  S  L  Y  F  K  I  P  F  H  F  H  F  Q  Q  H  F  S  A  S  K  C  I  V  L  Q  Q  I  L  L  L  K  P   : V  L  Q  E  P  V  P  K  R :   L  V  G  G  *  I  G  V  E  T  M  L  Q  R  I  S  D  L  E  L  K  L  E  L  *  C  F  K  V  L  S  S  L  L  M  L  L  K  S  L  W  V  Q  R :   G  V  M  W  *  L  N  K  V  G  V  H  P  K  *  Q  K  M  A  *  L  L  Q  K  V  L  N  S  R  T  R  Y  K  M  L  V  L  A  L  *  N  K  S  P  M  Q  Q  M  M  L  L  V  M  :  V  P  L  V  Q  Q  F  S  P  E  Q  Y  L  L  K  D  A  S  Q  W  Q  L  V  *  M  Q  W  T  L  D  G  V  L  P  W  L  *  I  L  L  *  Q  T  *  K  A  E  H  G  *  S  V  H  L  R  K  L  H  R :   L  G  L  S  L  Q  T  E  K  E  *  L  A  T  S  L  Q  G  Q  W  R  K  *  A  R  R  E  S  S  L  F  K :   T  G  R  H  C  S  M  S  W  M  L  L  K  G  *  S  W  I  E  V  T  Y  H  H  T  S  S  Q  I  R  R  I  R  N  V :   N  W  I  T  H  *  F  *  F  M  R  K  R  S  Q  A  L  M  L  L  *  K  H  W  S  *  L  *  R :   D  K  G  P  S  *  L  W  L  K  M  W  T  M  K  H  S  P  L  L  F  *  T  N  S  V  L  E  S  R :   F  V  P  S  K  H  Q  A  L  V  K  T  G  K  L  I  C  K  I  L  L  F  *  L  E  A  K :   S  *  Q  K  S  L  D  *  T  L  K  I  W  S  S  R  C  W  E  Q  V  K  R :   Q  L  S  L  R  M  I  L  S  F  L  M  V  L  V  R  R  S  P  S  R  N  D  A  N  * :   L  D  Q  P  L  N  R  A  H  L  T  M  T  R  R  S  C  R  K  D  *  L  S  F  Q  G  V  L  L  C  *  R :   L  E  E  P  V  K  L  R  L  V  K  R  K  I  E  *  L  M  L  *  T  P  Q  R  L  Q  W  R  K  E  L  F  Q  :  V  V  V  L  L  F  F  M  Q  Q  E  N  W  I  I  *  Q  Q  P  T  L  T  R  R  L  V  Y  K  L  F  R  M  L  *  R :   R  Q  Y  I  Q  *  P  L  T  Q  E  *  R  V  L  S  W  L  A  N  C  W  I  R  T  T  L  I  L  D  M  M  R  P  R  V  N  M  *  I  *  *  R  Q  E  S  S  I  Q  *  K  *  S  G  Q  L  W  S  M  L  P   : V  S  R  L  F  *  P  Q  L  K  Q  L  L  S  S  F  L  R  T  R  R  N  L  L  Q  W  V  A  V  W  V  V  V  W  V  A  W  T  S  D  *  K  A  K  N  S  N  C  S  C  L  T  H  L  V  Y  R  T  K  Q  K  N  K  F  R  F  I  S  Y  F  D  E  S  F  Y  D  R  K  R  A  Y  C  I  N  S  K  R  D  K  T  I  V  N  S  C  F  C  R  F  K  I  C  S  L  H  L  N  T  Q  L  K  Y  S :   L  R  K  L  L  A  R  G  I  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49821" stop="49942"/>
                    <exon start="50050" stop="50074"/>
                    <exon start="50159" stop="50290"/>
                    <exon start="51432" stop="51591"/>
                    <exon start="51718" stop="51893"/>
                    <exon start="52235" stop="52330"/>
                    <exon start="52704" stop="52808"/>
                    <exon start="52931" stop="53017"/>
                    <exon start="53111" stop="53200"/>
                    <exon start="53289" stop="53369"/>
                    <exon start="53460" stop="53528"/>
                    <exon start="53724" stop="53801"/>
                    <exon start="53893" stop="53988"/>
                    <exon start="54128" stop="54227"/>
                    <exon start="54308" stop="54411"/>
                    <exon start="54530" stop="54714"/>
                    <exon start="54819" stop="54936"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1821</number_coding_nucleotides>
                  <number_encoded_amino_acids>607</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFIPTSLFVLQNPFPLSLSAAFLSFKMYRFAANLASKASVARTSSQKIGGRLNWSRNYAAKDIRFGVEARALMLQGVEQLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIQNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDSVVTNLKSRARMISTSEEIAQVGTISANGERVIGDLIARAMEKVGKEGVITIQDGKTLLNELDVVEGMKLDRGYISPYFITNQKNQKCELDNPLILIHEKKISSINAVVKALELALKRQRPLLIVAEDVDNEALATLILNKLRAGIKVCAIKAPGFGENRKAYLQDLAILTGGQVITEELGLNIENLEFEMLGTSKEATISKDDTVILDGAGEKKSIEERCELIRSTIEQSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAARELDNLTTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLDQDNLDLGYDAAKGEYVDMIKAGIIDPVKVIRTALVDAASVSSLLTTTEAVVVELPKDEKESPAMGGGMGGGMGGMDF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54941" stop="55155"/>
                    <exon start="55494" stop="55527"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAKNSNCSCLTHLVYRTKQKNKFRFISYFDESFYDRKRAYCINSKRDKTIVNSCFCRFKICSLHLNTQLKYSLRKLLARGIRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="62866" PGL_stop="58286"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62866" e_stop="62729"/>
            <exon e_start="62034" e_stop="61963"/>
            <exon e_start="61448" e_stop="61261"/>
            <exon e_start="60391" e_stop="60328"/>
            <exon e_start="60234" e_stop="60138"/>
            <exon e_start="58609" e_stop="58459"/>
            <exon e_start="58371" e_stop="58286"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.858" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="62866" e_stop="62729" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62728" i_stop="62035" i_length="694"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62034" e_stop="61963" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61962" i_stop="61449" i_length="514"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61448" e_stop="61261" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="0.858" acc_prob="0.859">
            <gDNA_intron_boundary i_start="61260" i_stop="60392" i_length="869"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="60391" e_stop="60328" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60327" i_stop="60235" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="60234" e_stop="60138" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="60137" i_stop="58610" i_length="1528"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58609" e_stop="58459" e_length="151"/>
          </exon>
          <intron i_serial="6" don_prob="0.978" acc_prob="0.957">
            <gDNA_intron_boundary i_start="58458" i_stop="58372" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="58371" e_stop="58286" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62866" stop="62729"/>
              <exon start="62034" stop="61963"/>
              <exon start="61448" stop="61261"/>
              <exon start="60391" stop="60328"/>
              <exon start="60234" stop="60138"/>
              <exon start="58609" stop="58459"/>
              <exon start="58371" stop="58286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTTTTAAAAAGTAAAAATATGTTGAGCTAATTCTAATCGAAGCCCATATTAGGGCTTCAAACTCAAAATCAATAATTCATCGTTAGCTGTTTAAAATTCTCAGAAAAATGTCATTCATCGAAGAATTTCAAGCCA : ATATCGAAGCTCTTCCGAACCATTTGCGGAGGAAGTATGCGTTGCTGCGTGATTTGGATAAAAGTCTGCAAG : GAGTCCAGACCCAAAATGAACAACGTTGTGACAAAGAAATAGAGGATATGATACAGCGTATTAAGGCTGGTAATGTGACACCAGACTCTTCACTAATCAAATTCTCTGACGATGCATTGGATGAGCAAAAGCATGCAATCAGGATTGCTGATGAAAAAGTTGCACTAGCTTCTCAGGCATATGATCTG : GTAGATGCTCATATTCAGCAGCTTGATCAGTACTTGAAAAAGTTTGACGAAGATCTCCGGAGAG : AACGGGATACTGCTGTTGTTACTGGAGCTCCTGCTACCACTGTTGAAAATAATGTCAAATCTGGAAGGTCTGGTGAGGGTAAGGGAGGGCGTAAAAA : AACACGTCTTGCTACAGCAGCTGCAGCTACAGCCACTGCAGCAACACCAAGTGGAATGGATTTGGATCTGCCTGTTGATCCAAACGAACCAACATACTGTTTCTGCAATCAAGTTAGCTATGGTGAAATGGTTGCTTGCGACAATCCTAAT : TGCAAAATAGAGTGGTTCCACTACGGCTGCGTTGGCCTCAAAGAACAGCCCAAGGGGAAATGGTTTTGCGCAGATTGTGCAGGAAC</gDNA_template>
            <first_frame> K  L  L  K  S  K  N  M  L  S  *  F  *  S  K  P  I  L  G  L  Q  T  Q  N  Q  *  F  I  V  S  C  L  K  F  S  E  K  C  H  S  S  K  N  F  K  P  :  I  S  K  L  F  R  T  I  C  G  G  S  M  R  C  C  V  I  W  I  K  V  C  K  :  E  S  R  P  K  M  N  N  V  V  T  K  K  *  R  I  *  Y  S  V  L  R  L  V  M  *  H  Q  T  L  H  *  S  N  S  L  T  M  H  W  M  S  K  S  M  Q  S  G  L  L  M  K  K  L  H  *  L  L  R  H  M  I  W :   *  M  L  I  F  S  S  L  I  S  T  *  K  S  L  T  K  I  S  G  E  :  N  G  I  L  L  L  L  L  E  L  L  L  P  L  L  K  I  M  S  N  L  E  G  L  V  R  V  R  E  G  V  K   : K  H  V  L  L  Q  Q  L  Q  L  Q  P  L  Q  Q  H  Q  V  E  W  I  W  I  C  L  L  I  Q  T  N  Q  H  T  V  S  A  I  K  L  A  M  V  K  W  L  L  A  T  I  L  I :   A  K  *  S  G  S  T  T  A  A  L  A  S  K  N  S  P  R  G  N  G  F  A  Q  I  V  Q  E  </first_frame>
            <second_frame>  N  F  *  K  V  K  I  C  *  A  N  S  N  R  S  P  Y  *  G  F  K  L  K  I  N  N  S  S  L  A  V  *  N  S  Q  K  N  V  I  H  R  R  I  S  S  Q :   Y  R  S  S  S  E  P  F  A  E  E  V  C  V  A  A  *  F  G  *  K  S  A  R :   S  P  D  P  K  *  T  T  L  *  Q  R  N  R  G  Y  D  T  A  Y  *  G  W  *  C  D  T  R  L  F  T  N  Q  I  L  *  R  C  I  G  *  A  K  A  C  N  Q  D  C  *  *  K  S  C  T  S  F  S  G  I  *  S   : G  R  C  S  Y  S  A  A  *  S  V  L  E  K  V  *  R  R  S  P  E  R :   T  G  Y  C  C  C  Y  W  S  S  C  Y  H  C  *  K  *  C  Q  I  W  K  V  W  *  G  *  G  R  A  *  K  :  N  T  S  C  Y  S  S  C  S  Y  S  H  C  S  N  T  K  W  N  G  F  G  S  A  C  *  S  K  R  T  N  I  L  F  L  Q  S  S  *  L  W  *  N  G  C  L  R  Q  S  *   : L  Q  N  R  V  V  P  L  R  L  R  W  P  Q  R  T  A  Q  G  E  M  V  L  R  R  L  C  R  N </second_frame>
            <third_frame>   T  F  K  K  *  K  Y  V  E  L  I  L  I  E  A  H  I  R  A  S  N  S  K  S  I  I  H  R  *  L  F  K  I  L  R  K  M  S  F  I  E  E  F  Q  A   : N  I  E  A  L  P  N  H  L  R  R  K  Y  A  L  L  R  D  L  D  K  S  L  Q   : G  V  Q  T  Q  N  E  Q  R  C  D  K  E  I  E  D  M  I  Q  R  I  K  A  G  N  V  T  P  D  S  S  L  I  K  F  S  D  D  A  L  D  E  Q  K  H  A  I  R  I  A  D  E  K  V  A  L  A  S  Q  A  Y  D  L  :  V  D  A  H  I  Q  Q  L  D  Q  Y  L  K  K  F  D  E  D  L  R  R   : E  R  D  T  A  V  V  T  G  A  P  A  T  T  V  E  N  N  V  K  S  G  R  S  G  E  G  K  G  G  R  K  K :   T  R  L  A  T  A  A  A  A  T  A  T  A  A  T  P  S  G  M  D  L  D  L  P  V  D  P  N  E  P  T  Y  C  F  C  N  Q  V  S  Y  G  E  M  V  A  C  D  N  P  N  :  C  K  I  E  W  F  H  Y  G  C  V  G  L  K  E  Q  P  K  G  K  W  F  C  A  D  C  A  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62777" stop="62729"/>
                    <exon start="62034" stop="61963"/>
                    <exon start="61448" stop="61261"/>
                    <exon start="60391" stop="60328"/>
                    <exon start="60234" stop="60138"/>
                    <exon start="58609" stop="58459"/>
                    <exon start="58371" stop="58288"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFKILRKMSFIEEFQANIEALPNHLRRKYALLRDLDKSLQGVQTQNEQRCDKEIEDMIQRIKAGNVTPDSSLIKFSDDALDEQKHAIRIADEKVALASQAYDLVDAHIQQLDQYLKKFDEDLRRERDTAVVTGAPATTVENNVKSGRSGEGKGGRKKTRLATAAAATATAATPSGMDLDLPVDPNEPTYCFCNQVSYGEMVACDNPNCKIEWFHYGCVGLKEQPKGKWFCADCAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="75068" PGL_stop="76506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75068" e_stop="75534"/>
            <exon e_start="76110" e_stop="76506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75068" e_stop="75534" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="75535" i_stop="76109" i_length="575"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="76110" e_stop="76506" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75534"/>
              <exon start="76110" stop="76506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75534"/>
              <exon start="76110" stop="76187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75068" stop="75495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATCTCAATCAAAAATCCCAAAAGAAAAATGTTTATCAAATTTGCAATTTTATTTGTATTTGTACCATTTGTAGTTGCAATTGATCATGTAAGTACAAGTACACCACAAGAACCGGTTCTTGAATTGTACATGCACGATATCTTGGGAGGAAATAATCCAACAGCTCGACCAATAACGGGTTTATTAGGCAATATTTATAGTGGACAAATACCATTTGCTACACCACTTGGTTTTGAACCTCCAGAAGATGGTGTTGCAATTCCAAATGCTAATGGTGCAATGCCAACATTCAATATCAATGGTGTTCCATTAGGAACAGGTCTAGCAGGCACAATATTTGCTGGAGGAAATAATAATAATAATGGACAAAATGTGAATACTCAATTAGGCCCTGATGGTCTAGGGCTAGGGTTCGGGACAATCACGGTTATCGATGACTTCTTGACCTCGTCTCCTGAATTAG : GTACACAAAAACTTGGAAAAGCACAAGGAGTATATGTAGCAAGTTCAGCAGACGGAAGTACTCAAATGATGGCATTTACAGCTATGTTTGAAGGAGGTGAATATGGTGATAGTCTAAATTTCTTTGGAGTTTTTAGAATTGGAAGTACAATGTCAAGAATTTCAGTAACAGGAGGAACTGGTAAATTTAAAAACGCGCGTGGATTCGCGGAAATACGTTCACTTATACCAGCTGGTCAACATGTTGCTAATGGTGCTGAGACATTGTTGAGGATTGTTGTTCATCTTACTTACTGAATTTTCATTAATTTGATGTAATTTTGTGTGTGTGTATGTATTCTGTTTTGTTTGATCAATATGAATATTAATTGTCTTGTTTCATTGTGGCAAAGTGAATA</gDNA_template>
            <first_frame> K  H  L  N  Q  K  S  Q  K  K  N  V  Y  Q  I  C  N  F  I  C  I  C  T  I  C  S  C  N  *  S  C  K  Y  K  Y  T  T  R  T  G  S  *  I  V  H  A  R  Y  L  G  R  K  *  S  N  S  S  T  N  N  G  F  I  R  Q  Y  L  *  W  T  N  T  I  C  Y  T  T  W  F  *  T  S  R  R  W  C  C  N  S  K  C  *  W  C  N  A  N  I  Q  Y  Q  W  C  S  I  R  N  R  S  S  R  H  N  I  C  W  R  K  *  *  *  *  W  T  K  C  E  Y  S  I  R  P  *  W  S  R  A  R  V  R  D  N  H  G  Y  R  *  L  L  D  L  V  S  *  I  R :   Y  T  K  T  W  K  S  T  R  S  I  C  S  K  F  S  R  R  K  Y  S  N  D  G  I  Y  S  Y  V  *  R  R  *  I  W  *  *  S  K  F  L  W  S  F  *  N  W  K  Y  N  V  K  N  F  S  N  R  R  N  W  *  I  *  K  R  A  W  I  R  G  N  T  F  T  Y  T  S  W  S  T  C  C  *  W  C  *  D  I  V  E  D  C  C  S  S  Y  L  L  N  F  H  *  F  D  V  I  L  C  V  C  M  Y  S  V  L  F  D  Q  Y  E  Y  *  L  S  C  F  I  V  A  K  *  I </first_frame>
            <second_frame>  N  I  S  I  K  N  P  K  R  K  M  F  I  K  F  A  I  L  F  V  F  V  P  F  V  V  A  I  D  H  V  S  T  S  T  P  Q  E  P  V  L  E  L  Y  M  H  D  I  L  G  G  N  N  P  T  A  R  P  I  T  G  L  L  G  N  I  Y  S  G  Q  I  P  F  A  T  P  L  G  F  E  P  P  E  D  G  V  A  I  P  N  A  N  G  A  M  P  T  F  N  I  N  G  V  P  L  G  T  G  L  A  G  T  I  F  A  G  G  N  N  N  N  N  G  Q  N  V  N  T  Q  L  G  P  D  G  L  G  L  G  F  G  T  I  T  V  I  D  D  F  L  T  S  S  P  E  L   : G  T  Q  K  L  G  K  A  Q  G  V  Y  V  A  S  S  A  D  G  S  T  Q  M  M  A  F  T  A  M  F  E  G  G  E  Y  G  D  S  L  N  F  F  G  V  F  R  I  G  S  T  M  S  R  I  S  V  T  G  G  T  G  K  F  K  N  A  R  G  F  A  E  I  R  S  L  I  P  A  G  Q  H  V  A  N  G  A  E  T  L  L  R  I  V  V  H  L  T  Y  *  I  F  I  N  L  M  *  F  C  V  C  V  C  I  L  F  C  L  I  N  M  N  I  N  C  L  V  S  L  W  Q  S  E   </second_frame>
            <third_frame>   T  S  Q  S  K  I  P  K  E  K  C  L  S  N  L  Q  F  Y  L  Y  L  Y  H  L  *  L  Q  L  I  M  *  V  Q  V  H  H  K  N  R  F  L  N  C  T  C  T  I  S  W  E  E  I  I  Q  Q  L  D  Q  *  R  V  Y  *  A  I  F  I  V  D  K  Y  H  L  L  H  H  L  V  L  N  L  Q  K  M  V  L  Q  F  Q  M  L  M  V  Q  C  Q  H  S  I  S  M  V  F  H  *  E  Q  V  *  Q  A  Q  Y  L  L  E  E  I  I  I  I  M  D  K  M  *  I  L  N  *  A  L  M  V  *  G  *  G  S  G  Q  S  R  L  S  M  T  S  *  P  R  L  L  N  *  :  V  H  K  N  L  E  K  H  K  E  Y  M  *  Q  V  Q  Q  T  E  V  L  K  *  W  H  L  Q  L  C  L  K  E  V  N  M  V  I  V  *  I  S  L  E  F  L  E  L  E  V  Q  C  Q  E  F  Q  *  Q  E  E  L  V  N  L  K  T  R  V  D  S  R  K  Y  V  H  L  Y  Q  L  V  N  M  L  L  M  V  L  R  H  C  *  G  L  L  F  I  L  L  T  E  F  S  L  I  *  C  N  F  V  C  V  Y  V  F  C  F  V  *  S  I  *  I  L  I  V  L  F  H  C  G  K  V  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75069" stop="75534"/>
                    <exon start="76110" stop="76405"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NISIKNPKRKMFIKFAILFVFVPFVVAIDHVSTSTPQEPVLELYMHDILGGNNPTARPITGLLGNIYSGQIPFATPLGFEPPEDGVAIPNANGAMPTFNINGVPLGTGLAGTIFAGGNNNNNGQNVNTQLGPDGLGLGFGTITVIDDFLTSSPELGTQKLGKAQGVYVASSADGSTQMMAFTAMFEGGEYGDSLNFFGVFRIGSTMSRISVTGGTGKFKNARGFAEIRSLIPAGQHVANGAETLLRIVVHLTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="79124" PGL_stop="79320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79124" e_stop="79320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="79124" e_stop="79320" e_length="197"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79124" stop="79320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTATTTCAAGAATCTGTTTGTAAATCCCAAGAAAATGCACCACCACCACCACCCTCCTCCACCAACCACCACCCCCACCAAAATCTCAACACCCTTTATCATTCTTGCCACCACTATCTTCTCACTTCTCCTTATTCTTACCTTCTCCTTCACTTCCCCTCCACCCCACCCCCACCCCAACCAACCCCACCCTT</gDNA_template>
            <first_frame> K  L  F  Q  E  S  V  C  K  S  Q  E  N  A  P  P  P  P  P  S  S  T  N  H  H  P  H  Q  N  L  N  T  L  Y  H  S  C  H  H  Y  L  L  T  S  P  Y  S  Y  L  L  L  H  F  P  S  T  P  P  P  P  Q  P  T  P  P   </first_frame>
            <second_frame>  N  Y  F  K  N  L  F  V  N  P  K  K  M  H  H  H  H  H  P  P  P  P  T  T  T  P  T  K  I  S  T  P  F  I  I  L  A  T  T  I  F  S  L  L  L  I  L  T  F  S  F  T  S  P  P  P  H  P  H  P  N  Q  P  H  P  </second_frame>
            <third_frame>   T  I  S  R  I  C  L  *  I  P  R  K  C  T  T  T  T  T  L  L  H  Q  P  P  P  P  P  K  S  Q  H  P  L  S  F  L  P  P  L  S  S  H  F  S  L  F  L  P  S  P  S  L  P  L  H  P  T  P  T  P  T  N  P  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79124" stop="79318"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFQESVCKSQENAPPPPPSSTNHHPHQNLNTLYHSCHHYLLTSPYSYLLLHFPSTPPPPQPTPP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79125" stop="79319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYFKNLFVNPKKMHHHHHPPPPTTTPTKISTPFIILATTIFSLLLILTFSFTSPPPHPHPNQPHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="79726" PGL_stop="82843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79726" e_stop="79743"/>
            <exon e_start="81060" e_stop="81135"/>
            <exon e_start="81237" e_stop="81352"/>
            <exon e_start="82188" e_stop="82843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.196" acc_prob="0.826" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79726" e_stop="79743" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.913">
            <gDNA_intron_boundary i_start="79744" i_stop="81059" i_length="1316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81060" e_stop="81135" e_length="76"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81136" i_stop="81236" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81237" e_stop="81352" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.196" acc_prob="0.826">
            <gDNA_intron_boundary i_start="81353" i_stop="82187" i_length="835"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82188" e_stop="82843" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79726" stop="79743"/>
              <exon start="81060" stop="81135"/>
              <exon start="81237" stop="81352"/>
              <exon start="82188" stop="82843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347097" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTTGTTACTCAAGATG : ATCTTCTACACATTCTGTCATATCTTCCCAAGGATCTTAATTTTGTCAACCACACAAGCTACATAGGGTGGAGAGA : GTCAAGGAAGTTGAAACCAATAGTTGTTGATCCTGGGCTCTATCTTGAAGAAGAAGATGAAGTATTTTATGCAACTCAGAAGAGGGAACTGCCTGATGCTTATCGATTATTTTCAG : GGTCTTCATCTAGTATCTTGAGTCGGAAGTTTATCGAGTTCTGCATCTTGGGCACGGATAACCTACCCAGGACTCTGCTAATGTACTTGTCAAATTCACCATCCTCGTCATCTGTGTATTTCCCGACCATTCTGTGCAATTCAAGGAAATTCAATAGAACAACAATCAACCACAACTTGCGGTATGCTTCATTTAACTCAAGAAAAGAGGCCCTTCCACTCAATACCAGTAACTTCAATGACCTGGTGATGAGTGGAGCAGTGTTTGCTGCACCATTCGAGGCAAACAATCCGATTCTTGACCAGATCGACAGTGAACTTCTCCACCACAAGTACGATGAACCAGTCCCTGGCGGATGGTGTTTAGGTGAAAATGAAACTGATAAATGTACTGTCTGGGGAGACGCAGAAGTTCTAAGACCAGGTCCAGGAGCACAGAGACTGGAAGAAAGATTTGTCCAGATTTTCAGTAATGGTACATTTCGTTCTAGTCGATGTGTCTACGAATAGAGCTCCCTCAAGATGAGAACATACAGAAGAGACAAACACTCGAAAAATGTTTTCTATCGAAAACCACCTCTCTACCTCCCAAGGTAGGGTTGAGGTTTGTGTATACACTACCTTCCCCAGACTCACACACTGGGTATGTTGTTGACT</gDNA_template>
            <first_frame> H  L  L  L  K  M  :  I  F  Y  T  F  C  H  I  F  P  R  I  L  I  L  S  T  T  Q  A  T  *  G  G  E   : S  Q  G  S  *  N  Q  *  L  L  I  L  G  S  I  L  K  K  K  M  K  Y  F  M  Q  L  R  R  G  N  C  L  M  L  I  D  Y  F  Q  :  G  L  H  L  V  S  *  V  G  S  L  S  S  S  A  S  W  A  R  I  T  Y  P  G  L  C  *  C  T  C  Q  I  H  H  P  R  H  L  C  I  S  R  P  F  C  A  I  Q  G  N  S  I  E  Q  Q  S  T  T  T  C  G  M  L  H  L  T  Q  E  K  R  P  F  H  S  I  P  V  T  S  M  T  W  *  *  V  E  Q  C  L  L  H  H  S  R  Q  T  I  R  F  L  T  R  S  T  V  N  F  S  T  T  S  T  M  N  Q  S  L  A  D  G  V  *  V  K  M  K  L  I  N  V  L  S  G  E  T  Q  K  F  *  D  Q  V  Q  E  H  R  D  W  K  K  D  L  S  R  F  S  V  M  V  H  F  V  L  V  D  V  S  T  N  R  A  P  S  R  *  E  H  T  E  E  T  N  T  R  K  M  F  S  I  E  N  H  L  S  T  S  Q  G  R  V  E  V  C  V  Y  T  T  F  P  R  L  T  H  W  V  C  C  *   </first_frame>
            <second_frame>  T  C  Y  S  R  * :   S  S  T  H  S  V  I  S  S  Q  G  S  *  F  C  Q  P  H  K  L  H  R  V  E  R  :  V  K  E  V  E  T  N  S  C  *  S  W  A  L  S  *  R  R  R  *  S  I  L  C  N  S  E  E  G  T  A  *  C  L  S  I  I  F  R :   V  F  I  *  Y  L  E  S  E  V  Y  R  V  L  H  L  G  H  G  *  P  T  Q  D  S  A  N  V  L  V  K  F  T  I  L  V  I  C  V  F  P  D  H  S  V  Q  F  K  E  I  Q  *  N  N  N  Q  P  Q  L  A  V  C  F  I  *  L  K  K  R  G  P  S  T  Q  Y  Q  *  L  Q  *  P  G  D  E  W  S  S  V  C  C  T  I  R  G  K  Q  S  D  S  *  P  D  R  Q  *  T  S  P  P  Q  V  R  *  T  S  P  W  R  M  V  F  R  *  K  *  N  *  *  M  Y  C  L  G  R  R  R  S  S  K  T  R  S  R  S  T  E  T  G  R  K  I  C  P  D  F  Q  *  W  Y  I  S  F  *  S  M  C  L  R  I  E  L  P  Q  D  E  N  I  Q  K  R  Q  T  L  E  K  C  F  L  S  K  T  T  S  L  P  P  K  V  G  L  R  F  V  Y  T  L  P  S  P  D  S  H  T  G  Y  V  V  D  </second_frame>
            <third_frame>   L  V  T  Q  D   : D  L  L  H  I  L  S  Y  L  P  K  D  L  N  F  V  N  H  T  S  Y  I  G  W  R  E :   S  R  K  L  K  P  I  V  V  D  P  G  L  Y  L  E  E  E  D  E  V  F  Y  A  T  Q  K  R  E  L  P  D  A  Y  R  L  F  S   : G  S  S  S  S  I  L  S  R  K  F  I  E  F  C  I  L  G  T  D  N  L  P  R  T  L  L  M  Y  L  S  N  S  P  S  S  S  S  V  Y  F  P  T  I  L  C  N  S  R  K  F  N  R  T  T  I  N  H  N  L  R  Y  A  S  F  N  S  R  K  E  A  L  P  L  N  T  S  N  F  N  D  L  V  M  S  G  A  V  F  A  A  P  F  E  A  N  N  P  I  L  D  Q  I  D  S  E  L  L  H  H  K  Y  D  E  P  V  P  G  G  W  C  L  G  E  N  E  T  D  K  C  T  V  W  G  D  A  E  V  L  R  P  G  P  G  A  Q  R  L  E  E  R  F  V  Q  I  F  S  N  G  T  F  R  S  S  R  C  V  Y  E  *  S  S  L  K  M  R  T  Y  R  R  D  K  H  S  K  N  V  F  Y  R  K  P  P  L  Y  L  P  R  *  G  *  G  L  C  I  H  Y  L  P  Q  T  H  T  L  G  M  L  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79728" stop="79743"/>
                    <exon start="81060" stop="81135"/>
                    <exon start="81237" stop="81352"/>
                    <exon start="82188" stop="82696"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTQDDLLHILSYLPKDLNFVNHTSYIGWRESRKLKPIVVDPGLYLEEEDEVFYATQKRELPDAYRLFSGSSSSILSRKFIEFCILGTDNLPRTLLMYLSNSPSSSSVYFPTILCNSRKFNRTTINHNLRYASFNSRKEALPLNTSNFNDLVMSGAVFAAPFEANNPILDQIDSELLHHKYDEPVPGGWCLGENETDKCTVWGDAEVLRPGPGAQRLEERFVQIFSNGTFRSSRCVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="89808" PGL_stop="83264"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89808" e_stop="89485"/>
            <exon e_start="87741" e_stop="87582"/>
            <exon e_start="86697" e_stop="86514"/>
            <exon e_start="86084" e_stop="86037"/>
            <exon e_start="85475" e_stop="85379"/>
            <exon e_start="84774" e_stop="84611"/>
            <exon e_start="84423" e_stop="84358"/>
            <exon e_start="84013" e_stop="83963"/>
            <exon e_start="83843" e_stop="83739"/>
            <exon e_start="83652" e_stop="83264"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.791" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.632" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.709" e_score="0.988"/>
          <exon-intron don_prob="0.894" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.840" e_score="0.960"/>
          <exon-intron don_prob="0.995" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89808" e_stop="89485" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.791" acc_prob="0.896">
            <gDNA_intron_boundary i_start="89484" i_stop="87742" i_length="1743"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87741" e_stop="87582" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.632" acc_prob="0.958">
            <gDNA_intron_boundary i_start="87581" i_stop="86698" i_length="884"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86697" e_stop="86514" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.950">
            <gDNA_intron_boundary i_start="86513" i_stop="86085" i_length="429"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="86084" e_stop="86037" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="86036" i_stop="85476" i_length="561"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="85475" e_stop="85379" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.995">
            <gDNA_intron_boundary i_start="85378" i_stop="84775" i_length="604"/>
          </intron>
          <exon e_serial="6" e_score="0.988">
            <gDNA_exon_boundary e_start="84774" e_stop="84611" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.709">
            <gDNA_intron_boundary i_start="84610" i_stop="84424" i_length="187"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="84423" e_stop="84358" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.894" acc_prob="0.995">
            <gDNA_intron_boundary i_start="84357" i_stop="84014" i_length="344"/>
          </intron>
          <exon e_serial="8" e_score="0.960">
            <gDNA_exon_boundary e_start="84013" e_stop="83963" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.840">
            <gDNA_intron_boundary i_start="83962" i_stop="83844" i_length="119"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="83843" e_stop="83739" e_length="105"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.984">
            <gDNA_intron_boundary i_start="83738" i_stop="83653" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="83652" e_stop="83264" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89808" stop="89485"/>
              <exon start="87741" stop="87582"/>
              <exon start="86697" stop="86514"/>
              <exon start="86084" stop="86037"/>
              <exon start="85475" stop="85379"/>
              <exon start="84774" stop="84611"/>
              <exon start="84423" stop="84358"/>
              <exon start="84013" stop="83989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84619" stop="84611"/>
              <exon start="84423" stop="84358"/>
              <exon start="84013" stop="83963"/>
              <exon start="83843" stop="83739"/>
              <exon start="83652" stop="83289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339369" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83981" stop="83963"/>
              <exon start="83843" stop="83739"/>
              <exon start="83652" stop="83264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329385" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACTCCACACTCTCTAATCAGTTCTTCAGCTTCTTGGTTACAACTAACTTCCTGAAAAAGTGTAGAGAATCCAAATATTTTTTATTAAATTTTTTGTTCACAAATGACTTTATAGTAAAAAAAAAGCTATCTTTTATAGTTTTTAGTATATTGAATTAAGAAAAAAATGCAGGGGTTGGCTCTTCAAACATCTAATTCTATAGCATCAAGTTATGGTGGGAAGAAAAAGTTTTCATTTTTGAATGTTTTGGATTCATTGCCTAGCAAAAAATCAATACCCACAAGGAGAATTTCCCCTTTTTCAGCTGGAATTTCATCTTTAT : TAAGATGTAGAGCGCTCCCTAAGTTGCAGCGAAGGCATAGCAGAATTATACCCTATGCATCTAATGTTGGTGTCGGATCTGGAAGTTTTGAAGAAAGTCAAGGAAATGAAAGCCACAATGTTTCAGTCAATCAGCCGTCTACTGATGGTTCATCGAAAAT : TGAGGCACTTCCAAGTAAAATTCCTTATCCTCTCGCTATAGCTCTTGTGCTATGTGGATGTTCGTTAGTATTTTCGGTGATTGCCTTCACGAAAGGAGGACCGTCATCACTCATTGCAGCATTTTCGAAATCAGGGTTCACTGCTGCATTCTCATTGATATTTGTTTCTGAGATTGGAGACAAG : ACATTTTTCATCGCTGCCCTCCTGGCCATGCAATATAAGAGAATACTG : GTCCTTTTGGGATCAATGGGTGCTCTTTCACTTATGACGGTCTTCTCTGTCATAATAGGAAGGATCTTTCATTCAGTACCTGCTCAGTTTCAAACAA : CCTTGCCTATTGGAGAATACGCGGCTGTTGCCCTCTTGTTCTTTTTTGGCCTCAAATCAATTAAAGATGCATGGGAACTTCCAAGCAATGATGTTGAGACTGGTGAAAAGAGTAGTCAGGAACTTGATGAATTTGCAGAAGCTGAGGAGCTTGTGAAGGAAAAG : GCATCAAAACGGCTCACAAATCCACTTGAAATTTTGTGGAAGTCTTTTAGCCTCGTATTTTTTGCT : GAATGGGGAGATCGATCAATGCTTGCAACAATAGCACTCGGTGCAGCTCAG : TCTCCATGGGGCGTGGCAAGTGGTGCCATTGCCGGACACCTGGTTGCTACATCTATTGCAATTCTAGGAGGCGGGTTTCTTGCCAATTACATTTCTGAGAAACTG : GTTGGCTACTTGGGCGGAGTTCTATTCTTAATATTTGCTGTTGCTACTTTGTTTGGAGTCTTTTAACCAAGCTCTACAGAAAAGAAGACAATGTCGATAAGTTCTAAGACGCCTATTTAGACTGGATAGATACGCGAGAAATGCCAATGGTAGAGGGCAAGAAACTCCTGATGGTACCATGGATCAGTAACATGATTTGGCATAAAACAATGACATTCTTGTACTACTGTAGAAGAAGTAGAAGAAACTATATTAGTGGTTCTTAGGCAACACAAGAGAGCTGTGTGTATGTGTAATACTATGGCCCCCATCAGAAAATTTTTCTGACAGTTGATGCTTTTCCATGATTGTTGTACAAGTTTTGTATATGTGAAAGAATCAAGATTTCT</gDNA_template>
            <first_frame> E  L  H  T  L  *  S  V  L  Q  L  L  G  Y  N  *  L  P  E  K  V  *  R  I  Q  I  F  F  I  K  F  F  V  H  K  *  L  Y  S  K  K  K  A  I  F  Y  S  F  *  Y  I  E  L  R  K  K  C  R  G  W  L  F  K  H  L  I  L  *  H  Q  V  M  V  G  R  K  S  F  H  F  *  M  F  W  I  H  C  L  A  K  N  Q  Y  P  Q  G  E  F  P  L  F  Q  L  E  F  H  L  Y  :  *  D  V  E  R  S  L  S  C  S  E  G  I  A  E  L  Y  P  M  H  L  M  L  V  S  D  L  E  V  L  K  K  V  K  E  M  K  A  T  M  F  Q  S  I  S  R  L  L  M  V  H  R  K   : L  R  H  F  Q  V  K  F  L  I  L  S  L  *  L  L  C  Y  V  D  V  R  *  Y  F  R  *  L  P  S  R  K  E  D  R  H  H  S  L  Q  H  F  R  N  Q  G  S  L  L  H  S  H  *  Y  L  F  L  R  L  E  T  R :   H  F  S  S  L  P  S  W  P  C  N  I  R  E  Y  W :   S  F  W  D  Q  W  V  L  F  H  L  *  R  S  S  L  S  *  *  E  G  S  F  I  Q  Y  L  L  S  F  K  Q  :  P  C  L  L  E  N  T  R  L  L  P  S  C  S  F  L  A  S  N  Q  L  K  M  H  G  N  F  Q  A  M  M  L  R  L  V  K  R  V  V  R  N  L  M  N  L  Q  K  L  R  S  L  *  R  K  R :   H  Q  N  G  S  Q  I  H  L  K  F  C  G  S  L  L  A  S  Y  F  L  L :   N  G  E  I  D  Q  C  L  Q  Q  *  H  S  V  Q  L  S :   L  H  G  A  W  Q  V  V  P  L  P  D  T  W  L  L  H  L  L  Q  F  *  E  A  G  F  L  P  I  T  F  L  R  N  W :   L  A  T  W  A  E  F  Y  S  *  Y  L  L  L  L  L  C  L  E  S  F  N  Q  A  L  Q  K  R  R  Q  C  R  *  V  L  R  R  L  F  R  L  D  R  Y  A  R  N  A  N  G  R  G  Q  E  T  P  D  G  T  M  D  Q  *  H  D  L  A  *  N  N  D  I  L  V  L  L  *  K  K  *  K  K  L  Y  *  W  F  L  G  N  T  R  E  L  C  V  C  V  I  L  W  P  P  S  E  N  F  S  D  S  *  C  F  S  M  I  V  V  Q  V  L  Y  M  *  K  N  Q  D  F  </first_frame>
            <second_frame>  N  S  T  L  S  N  Q  F  F  S  F  L  V  T  T  N  F  L  K  K  C  R  E  S  K  Y  F  L  L  N  F  L  F  T  N  D  F  I  V  K  K  K  L  S  F  I  V  F  S  I  L  N  *  E  K  N  A  G  V  G  S  S  N  I  *  F  Y  S  I  K  L  W  W  E  E  K  V  F  I  F  E  C  F  G  F  I  A  *  Q  K  I  N  T  H  K  E  N  F  P  F  F  S  W  N  F  I  F  I :   K  M  *  S  A  P  *  V  A  A  K  A  *  Q  N  Y  T  L  C  I  *  C  W  C  R  I  W  K  F  *  R  K  S  R  K  *  K  P  Q  C  F  S  Q  S  A  V  Y  *  W  F  I  E  N  :  *  G  T  S  K  *  N  S  L  S  S  R  Y  S  S  C  A  M  W  M  F  V  S  I  F  G  D  C  L  H  E  R  R  T  V  I  T  H  C  S  I  F  E  I  R  V  H  C  C  I  L  I  D  I  C  F  *  D  W  R  Q   : D  I  F  H  R  C  P  P  G  H  A  I  *  E  N  T   : G  P  F  G  I  N  G  C  S  F  T  Y  D  G  L  L  C  H  N  R  K  D  L  S  F  S  T  C  S  V  S  N  N :   L  A  Y  W  R  I  R  G  C  C  P  L  V  L  F  W  P  Q  I  N  *  R  C  M  G  T  S  K  Q  *  C  *  D  W  *  K  E  *  S  G  T  *  *  I  C  R  S  *  G  A  C  E  G  K   : G  I  K  T  A  H  K  S  T  *  N  F  V  E  V  F  *  P  R  I  F  C   : *  M  G  R  S  I  N  A  C  N  N  S  T  R  C  S  S   : V  S  M  G  R  G  K  W  C  H  C  R  T  P  G  C  Y  I  Y  C  N  S  R  R  R  V  S  C  Q  L  H  F  *  E  T   : G  W  L  L  G  R  S  S  I  L  N  I  C  C  C  Y  F  V  W  S  L  L  T  K  L  Y  R  K  E  D  N  V  D  K  F  *  D  A  Y  L  D  W  I  D  T  R  E  M  P  M  V  E  G  K  K  L  L  M  V  P  W  I  S  N  M  I  W  H  K  T  M  T  F  L  Y  Y  C  R  R  S  R  R  N  Y  I  S  G  S  *  A  T  Q  E  S  C  V  Y  V  *  Y  Y  G  P  H  Q  K  I  F  L  T  V  D  A  F  P  *  L  L  Y  K  F  C  I  C  E  R  I  K  I  S </second_frame>
            <third_frame>   T  P  H  S  L  I  S  S  S  A  S  W  L  Q  L  T  S  *  K  S  V  E  N  P  N  I  F  Y  *  I  F  C  S  Q  M  T  L  *  *  K  K  S  Y  L  L  *  F  L  V  Y  *  I  K  K  K  M  Q  G  L  A  L  Q  T  S  N  S  I  A  S  S  Y  G  G  K  K  K  F  S  F  L  N  V  L  D  S  L  P  S  K  K  S  I  P  T  R  R  I  S  P  F  S  A  G  I  S  S  L   : L  R  C  R  A  L  P  K  L  Q  R  R  H  S  R  I  I  P  Y  A  S  N  V  G  V  G  S  G  S  F  E  E  S  Q  G  N  E  S  H  N  V  S  V  N  Q  P  S  T  D  G  S  S  K  I :   E  A  L  P  S  K  I  P  Y  P  L  A  I  A  L  V  L  C  G  C  S  L  V  F  S  V  I  A  F  T  K  G  G  P  S  S  L  I  A  A  F  S  K  S  G  F  T  A  A  F  S  L  I  F  V  S  E  I  G  D  K  :  T  F  F  I  A  A  L  L  A  M  Q  Y  K  R  I  L  :  V  L  L  G  S  M  G  A  L  S  L  M  T  V  F  S  V  I  I  G  R  I  F  H  S  V  P  A  Q  F  Q  T   : T  L  P  I  G  E  Y  A  A  V  A  L  L  F  F  F  G  L  K  S  I  K  D  A  W  E  L  P  S  N  D  V  E  T  G  E  K  S  S  Q  E  L  D  E  F  A  E  A  E  E  L  V  K  E  K  :  A  S  K  R  L  T  N  P  L  E  I  L  W  K  S  F  S  L  V  F  F  A  :  E  W  G  D  R  S  M  L  A  T  I  A  L  G  A  A  Q  :  S  P  W  G  V  A  S  G  A  I  A  G  H  L  V  A  T  S  I  A  I  L  G  G  G  F  L  A  N  Y  I  S  E  K  L  :  V  G  Y  L  G  G  V  L  F  L  I  F  A  V  A  T  L  F  G  V  F  *  P  S  S  T  E  K  K  T  M  S  I  S  S  K  T  P  I  *  T  G  *  I  R  E  K  C  Q  W  *  R  A  R  N  S  *  W  Y  H  G  S  V  T  *  F  G  I  K  Q  *  H  S  C  T  T  V  E  E  V  E  E  T  I  L  V  V  L  R  Q  H  K  R  A  V  C  M  C  N  T  M  A  P  I  R  K  F  F  *  Q  L  M  L  F  H  D  C  C  T  S  F  V  Y  V  K  E  S  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89653" stop="89485"/>
                    <exon start="87741" stop="87582"/>
                    <exon start="86697" stop="86514"/>
                    <exon start="86084" stop="86037"/>
                    <exon start="85475" stop="85379"/>
                    <exon start="84774" stop="84611"/>
                    <exon start="84423" stop="84358"/>
                    <exon start="84013" stop="83963"/>
                    <exon start="83843" stop="83739"/>
                    <exon start="83652" stop="83587"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1107</number_coding_nucleotides>
                  <number_encoded_amino_acids>369</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKKKMQGLALQTSNSIASSYGGKKKFSFLNVLDSLPSKKSIPTRRISPFSAGISSLLRCRALPKLQRRHSRIIPYASNVGVGSGSFEESQGNESHNVSVNQPSTDGSSKIEALPSKIPYPLAIALVLCGCSLVFSVIAFTKGGPSSLIAAFSKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKRILVLLGSMGALSLMTVFSVIIGRIFHSVPAQFQTTLPIGEYAAVALLFFFGLKSIKDAWELPSNDVETGEKSSQELDEFAEAEELVKEKASKRLTNPLEILWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLVATSIAILGGGFLANYISEKLVGYLGGVLFLIFAVATLFGVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="99096" PGL_stop="101456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99096" e_stop="99364"/>
            <exon e_start="100446" e_stop="101456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.996"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99096" e_stop="99364" e_length="269"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="99365" i_stop="100445" i_length="1081"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="100446" e_stop="101456" e_length="1011"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99096" stop="99364"/>
              <exon start="100446" stop="101456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTAAACAAAATCAAACCAAACCCTTATTCCATTTTTTTCTCTTTCAATTTCTCCCTTTTGCTCTCTGTGTGTGAAAAAAACAATGAAAATGGAGGATTTGGACCCAACTGCATGTTTCATGGTGGATGATGACCTTCTCAACTTCTCTTTGGAAGATGAAACTGTTGAAGAAGATGATGAAAAATCAACTATTACTAGCAAAGACCCACTTTCTTATTCTTCTTCGTCTTCAACAAACCCTCTTGTTAGCCTTCTTCCCCACCCT : GAGTGTGTAGAGGAAGAGTTGGAATGGCTGTCAAACAAAGATGCATTTCCAGCGATAGAGTTTGGCATTCTTTCGGAGAACCCGGGTATGGTATTTGATCACCATAGCCCGGTTTCAGTGCTGGAGAATAGTAGCAGCACTAGTCACAGCAGTGGCAATGGTGTTGTTAGTGGAAATGCTTATACGAGCTGCTGCGTCAACTTAAAAGTTCCGGTTAATTACCCTGTTCGTGCACGGAGCAAGAGAAGACGTAGAAGACGGAGAGGTGGATTTGCTGACATGCCAAGCGAGCATTGTCTGCCGGTGACACAACCGAGTTTCAAGAACGTTAAGCAGCGTGAGCCATTGCTTTCTTTACCAATGAATTCAGCTAAGAGTGCTGCTAGCATTGGGAGGAGGTGCCAACACTGTGGAGCCGATAAGACCCCACAATGGCGGGCAGGCCCTCTGGGGCCAAAAACACTGTGTAATGCTTGTGGTGTGCGCTATAAGTCAGGCAGGCTGTTACCAGAGTATCGCCCGGCTAATAGCCCTACTTTCTCGGCTGCTGCGCATTCAAACTCCCACCGGAAGGTTTTGGAGATGAGAAAGCATAAGATTGGTGTGGGAGGAATGTTGATTCATGAAGCTTGTGGATATAGGGTAGGACAGTAGTGAGTCATCTGCAGCGTCTTTTCAGATATTTTTCTTCATTTACTATAGTTAGCATAGACTATAGGTTTTTGTTGTAATGGTCTTGATGGTCGGTGATTTGCTTTGGTTTTCCATCAAAATCCACTAGGAATTTTGAACTAGTTTGTTTTATTATATGCTTTTAAGATAGAAATCCAGAAAGAAGAGCTCCTAACAAAGATTTGGTTGTTTTTTTAATCCTTCCTTCTTACCTCTGTCATTTGCATGGATTGGAAATGATACATTTTTGAATCTTGAGAATGATGTTTGTGGCAGTTGCTGGGAATGTACTTGCTAAGCAGTTTTAACAGTTGCAGAAGGTGGTGTTCGCTCGAGATG</gDNA_template>
            <first_frame> L  S  K  Q  N  Q  T  K  P  L  F  H  F  F  L  F  Q  F  L  P  F  A  L  C  V  *  K  K  Q  *  K  W  R  I  W  T  Q  L  H  V  S  W  W  M  M  T  F  S  T  S  L  W  K  M  K  L  L  K  K  M  M  K  N  Q  L  L  L  A  K  T  H  F  L  I  L  L  R  L  Q  Q  T  L  L  L  A  F  F  P  T  L :   S  V  *  R  K  S  W  N  G  C  Q  T  K  M  H  F  Q  R  *  S  L  A  F  F  R  R  T  R  V  W  Y  L  I  T  I  A  R  F  Q  C  W  R  I  V  A  A  L  V  T  A  V  A  M  V  L  L  V  E  M  L  I  R  A  A  A  S  T  *  K  F  R  L  I  T  L  F  V  H  G  A  R  E  D  V  E  D  G  E  V  D  L  L  T  C  Q  A  S  I  V  C  R  *  H  N  R  V  S  R  T  L  S  S  V  S  H  C  F  L  Y  Q  *  I  Q  L  R  V  L  L  A  L  G  G  G  A  N  T  V  E  P  I  R  P  H  N  G  G  Q  A  L  W  G  Q  K  H  C  V  M  L  V  V  C  A  I  S  Q  A  G  C  Y  Q  S  I  A  R  L  I  A  L  L  S  R  L  L  R  I  Q  T  P  T  G  R  F  W  R  *  E  S  I  R  L  V  W  E  E  C  *  F  M  K  L  V  D  I  G  *  D  S  S  E  S  S  A  A  S  F  Q  I  F  F  F  I  Y  Y  S  *  H  R  L  *  V  F  V  V  M  V  L  M  V  G  D  L  L  W  F  S  I  K  I  H  *  E  F  *  T  S  L  F  Y  Y  M  L  L  R  *  K  S  R  K  K  S  S  *  Q  R  F  G  C  F  F  N  P  S  F  L  P  L  S  F  A  W  I  G  N  D  T  F  L  N  L  E  N  D  V  C  G  S  C  W  E  C  T  C  *  A  V  L  T  V  A  E  G  G  V  R  S  R   </first_frame>
            <second_frame>  S  L  N  K  I  K  P  N  P  Y  S  I  F  F  S  F  N  F  S  L  L  L  S  V  C  E  K  N  N  E  N  G  G  F  G  P  N  C  M  F  H  G  G  *  *  P  S  Q  L  L  F  G  R  *  N  C  *  R  R  *  *  K  I  N  Y  Y  *  Q  R  P  T  F  L  F  F  F  V  F  N  K  P  S  C  *  P  S  S  P  P   : *  V  C  R  G  R  V  G  M  A  V  K  Q  R  C  I  S  S  D  R  V  W  H  S  F  G  E  P  G  Y  G  I  *  S  P  *  P  G  F  S  A  G  E  *  *  Q  H  *  S  Q  Q  W  Q  W  C  C  *  W  K  C  L  Y  E  L  L  R  Q  L  K  S  S  G  *  L  P  C  S  C  T  E  Q  E  K  T  *  K  T  E  R  W  I  C  *  H  A  K  R  A  L  S  A  G  D  T  T  E  F  Q  E  R  *  A  A  *  A  I  A  F  F  T  N  E  F  S  *  E  C  C  *  H  W  E  E  V  P  T  L  W  S  R  *  D  P  T  M  A  G  R  P  S  G  A  K  N  T  V  *  C  L  W  C  A  L  *  V  R  Q  A  V  T  R  V  S  P  G  *  *  P  Y  F  L  G  C  C  A  F  K  L  P  P  E  G  F  G  D  E  K  A  *  D  W  C  G  R  N  V  D  S  *  S  L  W  I  *  G  R  T  V  V  S  H  L  Q  R  L  F  R  Y  F  S  S  F  T  I  V  S  I  D  Y  R  F  L  L  *  W  S  *  W  S  V  I  C  F  G  F  P  S  K  S  T  R  N  F  E  L  V  C  F  I  I  C  F  *  D  R  N  P  E  R  R  A  P  N  K  D  L  V  V  F  L  I  L  P  S  Y  L  C  H  L  H  G  L  E  M  I  H  F  *  I  L  R  M  M  F  V  A  V  A  G  N  V  L  A  K  Q  F  *  Q  L  Q  K  V  V  F  A  R  D  </second_frame>
            <third_frame>   L  *  T  K  S  N  Q  T  L  I  P  F  F  S  L  S  I  S  P  F  C  S  L  C  V  K  K  T  M  K  M  E  D  L  D  P  T  A  C  F  M  V  D  D  D  L  L  N  F  S  L  E  D  E  T  V  E  E  D  D  E  K  S  T  I  T  S  K  D  P  L  S  Y  S  S  S  S  S  T  N  P  L  V  S  L  L  P  H  P  :  E  C  V  E  E  E  L  E  W  L  S  N  K  D  A  F  P  A  I  E  F  G  I  L  S  E  N  P  G  M  V  F  D  H  H  S  P  V  S  V  L  E  N  S  S  S  T  S  H  S  S  G  N  G  V  V  S  G  N  A  Y  T  S  C  C  V  N  L  K  V  P  V  N  Y  P  V  R  A  R  S  K  R  R  R  R  R  R  R  G  G  F  A  D  M  P  S  E  H  C  L  P  V  T  Q  P  S  F  K  N  V  K  Q  R  E  P  L  L  S  L  P  M  N  S  A  K  S  A  A  S  I  G  R  R  C  Q  H  C  G  A  D  K  T  P  Q  W  R  A  G  P  L  G  P  K  T  L  C  N  A  C  G  V  R  Y  K  S  G  R  L  L  P  E  Y  R  P  A  N  S  P  T  F  S  A  A  A  H  S  N  S  H  R  K  V  L  E  M  R  K  H  K  I  G  V  G  G  M  L  I  H  E  A  C  G  Y  R  V  G  Q  *  *  V  I  C  S  V  F  S  D  I  F  L  H  L  L  *  L  A  *  T  I  G  F  C  C  N  G  L  D  G  R  *  F  A  L  V  F  H  Q  N  P  L  G  I  L  N  *  F  V  L  L  Y  A  F  K  I  E  I  Q  K  E  E  L  L  T  K  I  W  L  F  F  *  S  F  L  L  T  S  V  I  C  M  D  W  K  *  Y  I  F  E  S  *  E  *  C  L  W  Q  L  L  G  M  Y  L  L  S  S  F  N  S  C  R  R  W  C  S  L  E  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0022M02.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99104" stop="99364"/>
                    <exon start="100446" stop="101099"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKSNQTLIPFFSLSISPFCSLCVKKTMKMEDLDPTACFMVDDDLLNFSLEDETVEEDDEKSTITSKDPLSYSSSSSTNPLVSLLPHPECVEEELEWLSNKDAFPAIEFGILSENPGMVFDHHSPVSVLENSSSTSHSSGNGVVSGNAYTSCCVNLKVPVNYPVRARSKRRRRRRRGGFADMPSEHCLPVTQPSFKNVKQREPLLSLPMNSAKSAASIGRRCQHCGADKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPANSPTFSAAAHSNSHRKVLEMRKHKIGVGGMLIHEACGYRVGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 83296 bytes spliced alignments in total
$ 22 spliced alignments have been stored
$ 3786 bytes was the average size of a spliced alignment
$ 24000 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1600 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 37 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 12:57:23
-->
