<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-02 15:46:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544534" ref_strand="+" ref_description="SGN-E544534 [TUS-66-O17](-)">
      <seq>tgctcccttatattcgtaatgctgtcttccatttacatcactgattaaaaagaatgatgttttctccttacatagttctcatacctctaataagtacgtagtcgtacaagtcgagttgaatatttttcatcatccaattcttcttgaactaggtagttgcttatacattaatttctcatgtgatgttagaatggcatcccaaggatcattagaggtgccttcagaggagtttcctactaggatcaattaccgtccaaatggcaagccccggattgtaattgaacactacatgcctgaactggaagcttatatgccaagagatgctgaaccaattgatttaaatgtgctacgagaaatcaatgatcgattgacagctatgctagaagatgtgagattgatgaagaaacgactcacacgtatcatgattttacagttgctatgcctctttgttgcattttcaggtctctttgtgaagttgattcgtaagtaagtactgttacttttgtgagccatttaaccttctatcagtgctgctcagaaatatgtgataggaaaatggagtgttaatagttctttgaagttttgtgctttgagtctgtactttctacagcctttgtgcctcatcagcttgtgctgttgtaaataagttcttgtaatcaagttttttggcttttgttcattgaaaagaaagagttttggtcttcctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="1463" stop="157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1163" g_stop="458" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="719"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E544534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1163" e_stop="458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCCTTATATTCGTAATGCTGTCTTCCATTTACATCACTGATTAAAAAGAATGATGTTTTCTCCTTACATAGTTCTCATACCTCTAATAAGTACGTAGTCGTACAAGTCGAGTTGAATATTTTTCATCATCCAATTCTTCTTGAACTAGGTAGTTGCTTATACATTAATTTCTCATGTGATGTTAGAATGGCATCCCAAGGATCATTAGAGGTGCCTTCAGAGGAGTTTCCTACTAGGATCAATTACCGTCCAAATGGCAAGCCCCGGATTGTAATTGAACACTACATGCCTGAACTGGAAGCTTATATGCCAAGAGATGCTGAACCAATTGATTTAAATGTGCTACGAGAAATCAATGATCGATTGACAGCTATGCTAGAAGATGTGAGATTGATGAAGAAACGACTCACACGTATCATGATTTTACAGTTGCTATGCCTCTTTGTTGCATTTTCAGGTCTCTTTGTGAAGTTGATTCGTAAGTAAGTACTGTTACTTTTGTGAGCCATTTAACCTTCTATCAGTGCTGCTCAGAAATATGTGATAGGAAAATGGAGTGTTAATAGTTCTTTGAAGTTTTGTGCTTTGAGTCTGTACTTTCTACAGCCTTTGTGCCTCATCAGCTTGTGCTGTTGTAAATAAGTTCTTGTAATCAAGTTTTTTGGCTTTTGTTCATTGAAAAGAAAGAGTTTTGGTCTTCCT</genome_strand>
        <mrna_strand>TGCTCCCTTATATTCGTAATGCTGTCTTCCATTTACATCACTGATTAAAAAGAATGATGTTTTCTCCTTACATAGTTCTCATACCTCTAATAAGTACGTAGTCGTACAAGTCGAGTTGAATATTTTTCATCATCCAATTCTTCTTGAACTAGGTAGTTGCTTATACATTAATTTCTCATGTGATGTTAGAATGGCATCCCAAGGATCATTAGAGGTGCCTTCAGAGGAGTTTCCTACTAGGATCAATTACCGTCCAAATGGCAAGCCCCGGATTGTAATTGAACACTACATGCCTGAACTGGAAGCTTATATGCCAAGAGATGCTGAACCAATTGATTTAAATGTGCTACGAGAAATCAATGATCGATTGACAGCTATGCTAGAAGATGTGAGATTGATGAAGAAACGACTCACACGTATCATGATTTTACAGTTGCTATGCCTCTTTGTTGCATTTTCAGGTCTCTTTGTGAAGTTGATTCGTAAGTAAGTACTGTTACTTTTGTGAGCCATTTAACCTTCTATCAGTGCTGCTCAGAAATATGTGATAGGAAAATGGAGTGTTAATAGTTCTTTGAAGTTTTGTGCTTTGAGTCTGTACTTTCTACAGCCTTTGTGCCTCATCAGCTTGTGCTGTTGTAAATAAGTTCTTGTAATCAAGTTTTTTGGCTTTTGTTCATTGAAAAGAAAGAGTTTTGGTCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544535" ref_strand="+" ref_description="SGN-E544535 [TUS-66-O17]">
      <seq>gaaattttgttctatattttgttgaaagatctttctgaaattgctaaaattactgctctctactctcattcctctaattctcagtaagtttccatacccattttcttcttttttttcacttggaaatccctgttgttatgattctttgttcttttttttgaattttagtactgtttcttgatttttttctgattttgttgatgtttaagggaaatgttgaagaaaaacattgaaattttaatgggtctgtttacttttatcttgtttgaattccccttttacttttatctggtactggttgctggtgggagttagtagaaatagagaggcatgcaaaagctgaatggatattggttataataaaaaaagaagaaaactttggctgaatttggtgattattttttaataaaattatcttagtggattttttaacctttcgggaatagtttgtctacctccacgagctagtgaaacactctcaactttcatagacctcacttgtgggatttcactcgatatattgttgttgttgttatccaattcgaccttttttttgggtttggtatgcatttgtggggaggaggtactttctttggtatgttaagagtgaagttttacttgttattgcttttggttttggttgcataagactagaaagtatctgaggctgttaattcaatgtgaacaatccaaggtgtaggtggagaaaggcttagaattttacaatcacaaagcaaaaactgagatgttgaataagagcatgtataagagtatctaaagaaaaaatgttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="2622" stop="1227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2322" g_stop="1527" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="794" r_length="794" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E544535" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2322" e_stop="1527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTTTGTTCTATATTTTGTTGAAAGATCTTTCTGAAATTGCTAAAATTACTGCTCTCTACTCTCATTCCTCTAATTCTCAGTAAGTTTCCATACCCATTTTCTTCTTTTTTTTCACTTGGAAATCCCTGTTGTTATGATTCTTTGTTCTTTTTTTTGAATTTTAGTACTGTTTCTTGATTTTTTTCTGATTTTGTTGATGTTTAAGGGAAATGTTGAAGAAAAACATTGAAATTTTAATGGGTCTGTTTACTTTTATCTTGTTTGAATTCCCCTTTTACTTTTATCTGGTACTGGTTGCTGGTGGGAGTTAGTAGAAATAGAGAGGCATGCAAAAGCTGAATGGATATTGGTTATAATAAAAAAAGAAGAAAACTTTGGCTGAATTTGGTGATTATTTTTTAATAAAATTATCTTAGTGGATTTTTTAACCTTTCGGGAATAGTTTGTCTACCTCCACGAGCTAGTGAAACACTCTCAACTTTCATAGACCTCACTTGTGGGATTTCACTCGATATATTGTTGTTGTTGTTATCCAATTCGACCTTTTTTTTGGGTTTGGTATGCATTTGTGGGGAGGAGGTACTTTCTTTGGTATGTTAAGAGTGAAGTTTTACTTGTTATTGCTTTTGGTTTTGGTTGCATAAGACTAGAAAGTATCTGAGGCTGTTAATTCCAATGTGAACAATCCAAGGTGTAGGTGGAGAAAGGCTTAGAATTTTACAATCACAAAGCAAAAACTGAAATGTTGAATAAGAGCATGTATAAGAGTATCTAAAGAAAAAAATGTTTTTA</genome_strand>
        <mrna_strand>GAAATTTTGTTCTATATTTTGTTGAAAGATCTTTCTGAAATTGCTAAAATTACTGCTCTCTACTCTCATTCCTCTAATTCTCAGTAAGTTTCCATACCCATTTTCTTCTTTTTTTTCACTTGGAAATCCCTGTTGTTATGATTCTTTGTTCTTTTTTTTGAATTTTAGTACTGTTTCTTGATTTTTTTCTGATTTTGTTGATGTTTAAGGGAAATGTTGAAGAAAAACATTGAAATTTTAATGGGTCTGTTTACTTTTATCTTGTTTGAATTCCCCTTTTACTTTTATCTGGTACTGGTTGCTGGTGGGAGTTAGTAGAAATAGAGAGGCATGCAAAAGCTGAATGGATATTGGTTATAATAAAAAAAGAAGAAAACTTTGGCTGAATTTGGTGATTATTTTTTAATAAAATTATCTTAGTGGATTTTTTAACCTTTCGGGAATAGTTTGTCTACCTCCACGAGCTAGTGAAACACTCTCAACTTTCATAGACCTCACTTGTGGGATTTCACTCGATATATTGTTGTTGTTGTTATCCAATTCGACCTTTTTTTTGGGTTTGGTATGCATTTGTGGGGAGGAGGTACTTTCTTTGGTATGTTAAGAGTGAAGTTTTACTTGTTATTGCTTTTGGTTTTGGTTGCATAAGACTAGAAAGTATCTGAGGCTGTTAATT-CAATGTGAACAATCCAAGGTGTAGGTGGAGAAAGGCTTAGAATTTTACAATCACAAAGCAAAAACTGAGATGTTGAATAAGAGCATGTATAAGAGTATCTAAAG-AAAAAATGTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307572" ref_strand="+" ref_description="SGN-E307572 [cLEY-16-C17]">
      <seq>aaattttgttctatattttgttgagggatctttctgaaattgctaaaattactgctctctactctcattcctctaattctcagtaagtttccatacccattttcttcttttttttcacttggaaatccctgttgttatgattctttgttcttttttttgaattttagtactgtttcttgatttttttctgattttgttgatgtttaagggaaatgttgaagaaaaacattgaaattttaatgggtctgtttacttttatcttgtttgaattccccttttacttttatctggtactggttgctggtgggagttagtagaaatagagaggcatgcaaaagctgaatggatattggttataataaaaaaagaagaaaactttggctgaatttggtgattattttttaataaaattatcttagtggattttttaacctttcgggaatagtttgtctacctccacgagctagtgaaacactctcaactttcatagacctcacttgtgggatttcactcgatatattgntgttgttgttatccaattcgaccttttttttgggtttggtatgcatttgtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="2621" stop="1445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2321" g_stop="1745" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E307572" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2321" e_stop="1745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTTGTTCTATATTTTGTTGAAAGATCTTTCTGAAATTGCTAAAATTACTGCTCTCTACTCTCATTCCTCTAATTCTCAGTAAGTTTCCATACCCATTTTCTTCTTTTTTTTCACTTGGAAATCCCTGTTGTTATGATTCTTTGTTCTTTTTTTTGAATTTTAGTACTGTTTCTTGATTTTTTTCTGATTTTGTTGATGTTTAAGGGAAATGTTGAAGAAAAACATTGAAATTTTAATGGGTCTGTTTACTTTTATCTTGTTTGAATTCCCCTTTTACTTTTATCTGGTACTGGTTGCTGGTGGGAGTTAGTAGAAATAGAGAGGCATGCAAAAGCTGAATGGATATTGGTTATAATAAAAAAAGAAGAAAACTTTGGCTGAATTTGGTGATTATTTTTTAATAAAATTATCTTAGTGGATTTTTTAACCTTTCGGGAATAGTTTGTCTACCTCCACGAGCTAGTGAAACACTCTCAACTTTCATAGACCTCACTTGTGGGATTTCACTCGATATATTGTTGTTGTTGTTATCCAATTCGACCTTTTTTTTGGGTTTGGTATGCATTTGTGGGG</genome_strand>
        <mrna_strand>AAATTTTGTTCTATATTTTGTTGAGGGATCTTTCTGAAATTGCTAAAATTACTGCTCTCTACTCTCATTCCTCTAATTCTCAGTAAGTTTCCATACCCATTTTCTTCTTTTTTTTCACTTGGAAATCCCTGTTGTTATGATTCTTTGTTCTTTTTTTTGAATTTTAGTACTGTTTCTTGATTTTTTTCTGATTTTGTTGATGTTTAAGGGAAATGTTGAAGAAAAACATTGAAATTTTAATGGGTCTGTTTACTTTTATCTTGTTTGAATTCCCCTTTTACTTTTATCTGGTACTGGTTGCTGGTGGGAGTTAGTAGAAATAGAGAGGCATGCAAAAGCTGAATGGATATTGGTTATAATAAAAAAAGAAGAAAACTTTGGCTGAATTTGGTGATTATTTTTTAATAAAATTATCTTAGTGGATTTTTTAACCTTTCGGGAATAGTTTGTCTACCTCCACGAGCTAGTGAAACACTCTCAACTTTCATAGACCTCACTTGTGGGATTTCACTCGATATATTGNTGTTGTTGTTATCCAATTCGACCTTTTTTTTGGGTTTGGTATGCATTTGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698213" ref_strand="+" ref_description="SGN-E698213 [FA05CD11]">
      <seq>ggaaagaagagaggtcaaagtaaaaggacgagaaaatatagaagggtagggagagtcgtcgttgattcgttctattcttacagacgcaaaagagaatctgattttgatgaggatccattactgactaaatgatcattctgctgcttcaagaaatttgttcatgtcctagtcccaagaggaaatgacaacgagagtggacgactcatgaccagtctctggtacttagtagaactcatctattggttcttgtcaagttacaatgatgcagtttgtttctcggatcatctctgaactttcaagagacgtatcttttactcgagcagattgaagaaggacggtgtagccttatcccacgttgtgtaaaactgttgagttgcggagaggcaagagagatagtcttttcaagatctcctccccactggtagttctcactgatcagagacttgtttcgagtaggatccctcgcgctctattccttttgtagatgatggcagcttctcagtttgtgggaggtttgagaaaaatgacaatccagagcaactatcctgacttgaggagtactatttctgcaatggaaggttacctttagttccatagagcttgtctaaaggaaaagaagcaaacaaaagtgagccatgattttgagctcaaaaaggtattgcaacatttggtgatttcttttcatctgttaagcgttgacagcagagttacttgatatttgtgctggcggaagatagtatgtcctgaaatagttgagttgaggtgtgcgtaagttggttgatatttgtgctggcggaagatagtatgtcctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="4200" stop="2786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3900" g_stop="3086" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E698213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3900" e_stop="3086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGAAGAGAGGTCAAAGTAAAAGGACGAGAAAATATAGAAGGGTAGGGAGAGTCGTCGTTGATTCGTTCTATTCTTACAGACGCAAAAGAGAATCTGATTTTGATGAGGATCCATTACTGACTAAATGATCATTCTGCTGCTTCAAGAAATTTGTTCATGTCCTAGTCCCAAGAGGAAATGACAACGAGAGTGGACGACTCATGACCAGTCTCTGGTACTTAGTAGAACTCATCTATTGGTTCTTGTCAAGTTACAATGATGCAGTTTGTTTCTCGGATCATCTCTGAACTTTCAAGAGACGTATCTTTTACTCGAGCAGATTGAAGAAGGACGGTGTAGCCTTATCCCACGTTGTGTAAAACTGTTGAGTTGCGGAGAGGCAAGAGAGATAGTCTTTTCAAGATCTCCTCCCCACTGGTAGTTCTCACTGATCAGAGACTTGTTTCGAGTAGGATCCCTCGCGCTCTATTCCTTTTGTAGATGATGGCAGCTTCTCAGTTTGTGGGAGGTTTGAGAAAAATGACAATCCAGAGCAACTATCCTGACTTGAGGAGTACTATTTCTGCAATGGAAGGTTACCTTTAGTTCCATAGAGCTTGTCTAAAGGAAAAGAAGCAAACAAAAGTGAGCCATGATTTTGAGCTCAAAAAGGTATTGCAACATTTGGTGATTTCTTTTCATCTGTTAAGCGTTGACAGCAGAGTTACTTGATATTTGTGCTGGCGGAAGATAGTATGTCCTGAAATAGTTGAGTTGAGGTGTGCGTAAGTTGGTTGATATTTGTGCTGGCGGAAGATAGTATGTCCTGAAA</genome_strand>
        <mrna_strand>GGAAAGAAGAGAGGTCAAAGTAAAAGGACGAGAAAATATAGAAGGGTAGGGAGAGTCGTCGTTGATTCGTTCTATTCTTACAGACGCAAAAGAGAATCTGATTTTGATGAGGATCCATTACTGACTAAATGATCATTCTGCTGCTTCAAGAAATTTGTTCATGTCCTAGTCCCAAGAGGAAATGACAACGAGAGTGGACGACTCATGACCAGTCTCTGGTACTTAGTAGAACTCATCTATTGGTTCTTGTCAAGTTACAATGATGCAGTTTGTTTCTCGGATCATCTCTGAACTTTCAAGAGACGTATCTTTTACTCGAGCAGATTGAAGAAGGACGGTGTAGCCTTATCCCACGTTGTGTAAAACTGTTGAGTTGCGGAGAGGCAAGAGAGATAGTCTTTTCAAGATCTCCTCCCCACTGGTAGTTCTCACTGATCAGAGACTTGTTTCGAGTAGGATCCCTCGCGCTCTATTCCTTTTGTAGATGATGGCAGCTTCTCAGTTTGTGGGAGGTTTGAGAAAAATGACAATCCAGAGCAACTATCCTGACTTGAGGAGTACTATTTCTGCAATGGAAGGTTACCTTTAGTTCCATAGAGCTTGTCTAAAGGAAAAGAAGCAAACAAAAGTGAGCCATGATTTTGAGCTCAAAAAGGTATTGCAACATTTGGTGATTTCTTTTCATCTGTTAAGCGTTGACAGCAGAGTTACTTGATATTTGTGCTGGCGGAAGATAGTATGTCCTGAAATAGTTGAGTTGAGGTGTGCGTAAGTTGGTTGATATTTGTGCTGGCGGAAGATAGTATGTCCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581932" ref_strand="+" ref_description="SGN-E581932 [7565]">
      <seq>gatcttatggtagcagttacagacgaaagtattgctcgtcctcttatatgggttgttatgtcaattttagcagtcccggtcctctccggatctatcttttgttatcagacacaatgcctaaatcttgatccatcagttatagggatgtcaaaggtgataggccaattgctgcttctttctttgacagtcttttatgactggtttggcaaaaggattccaatgagaaaactgattggtattgtgcagataacatatgctgcttctcttcttcttgaccttgtacttgttaagcagcttaatctcaaattgggaatttcgaatgaatggtttgctctttgcttctcgggtctagcagaaactattgcagtatttaagctcttaccattccatgtgctgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="4833" stop="3834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4533" g_stop="4134" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E581932" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4533" e_stop="4134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTTATGGTAGCAGCTACAGGCGAAAGCATTGCTCGTCCTCTTATATGGATTGTTATGTCAATTCTAGCAGTCCCGGTCCTCTCCGGATCTATCTTTTGTTATCAGACACAATACTTAAATCTTGATCCATCAGTTATAGGGATGTCAAAGGTGATAGGCCAATTGCTGCTTCTTTCTTTGACAGTCTTTTATGACCGGTACGGCAAAAGGATTCCAATGAGAAAACTGATTGGTATTGTGCAGATAACATATGCTGCTTCTCTTCTTCTTGACCTTGTACTTGTCAAGCAGCTTAATCTCAAATTGGGAATTTCGAATGAATGGTTTGCTCTTTGCTTCTCGGGTCTAGCAGAAACTATTGCAATATTTAAGCTCTTACCATTCCATGTGCTGTTTG</genome_strand>
        <mrna_strand>GATCTTATGGTAGCAGTTACAGACGAAAGTATTGCTCGTCCTCTTATATGGGTTGTTATGTCAATTTTAGCAGTCCCGGTCCTCTCCGGATCTATCTTTTGTTATCAGACACAATGCCTAAATCTTGATCCATCAGTTATAGGGATGTCAAAGGTGATAGGCCAATTGCTGCTTCTTTCTTTGACAGTCTTTTATGACTGGTTTGGCAAAAGGATTCCAATGAGAAAACTGATTGGTATTGTGCAGATAACATATGCTGCTTCTCTTCTTCTTGACCTTGTACTTGTTAAGCAGCTTAATCTCAAATTGGGAATTTCGAATGAATGGTTTGCTCTTTGCTTCTCGGGTCTAGCAGAAACTATTGCAGTATTTAAGCTCTTACCATTCCATGTGCTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379145" ref_strand="+" ref_description="SGN-E379145 [TUS-3-L5](-)">
      <seq>tgaagtaatgatgattggcgacagccttaaagatgatgttgcttgtggcaaacgagctggagcttttacttgctgnctcgacgaaagaggaaggtatgatgccccagaatatgcaaacgttcaacacaaaccagactataaggtgtcttctcttgttgaggttcagtcactactagaaagagatttcgagctgacatcttgatttttgcaaatctttggaacccctcctggcctggctgagcaacgagacatggtttaccctcgtaagcctccacgtagcattcctgcatacacgtttcttttggtttctgcaagatcataggaattagattgcagctttgctcaagtgagatgatcataattcatttttcaagccagaaatggggaatatgagttgtttttgttcactcttggtggtgaaactggtgatttacagagactttgtatcgatttagcctggttcgttgtgggtgacatagtcacgagaccatgactgtgttttcgtatgaagtgttcttgtcatctctttgctcgtaatggaagctctagctcagctcttccacgcgaatagtagctaagatttcttagaaataattgtacttgttagtgcaatgattttcacaagctagtctcagtttttgttctctttttttggtatctcgagacgactcacaacctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="11941" stop="10277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11641" g_stop="11605" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11604" i_stop="11221" i_length="384">
            <donor d_prob="0.551" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11220" g_stop="10577" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="681" r_length="644" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E379145" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11641" e_stop="11605"/>
          <exon e_start="11220" e_stop="10577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTAATGATGATTGGCGACAGCCTTAAAGATGATGTGAGTTTCCTCTCAAGCTGACCGCCTTCTTCTCTTTCACGTCCACTCTTTGCAATAGGTGACTCAATGCATCGCTGTGAAAGATGTGACATTTTCCTTCGACTAAGTTCTTAACTAATTCATATAGGTAGTAATTGTGCTTGGCATATGATACTCAAAGCAATTTTCTGCTCGATCTAACTTTTGCTTGATCGTTAGCAGTTCTTAGCATACGAGCTTTGGCTCCCACCTCTAAGTTGTTAGTTTTATGATTTCTTGAGCCTTGTGAACTCTTTTTTTCGTTCATGCATGTCAGTCGTCATGCCATTTAGGAAGTCATGGTAAAATTCTAAGATATGTGTTGTTACTTACTTCCAATGAATATTTTTCGAGTTTGATATACAGGTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACATCTTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAGCCTCCACGTAGCATTCCTGCATACACGTTTCTTTTGGTTTCTGCAAGATCATAGGAATTAGATTGCAGCTTTGCTCAAGTGAGATGATCATAATTCATTTTTCAAGCCAGAAATGGGGAATATGAGTTGTTTTTGTTCACTCTTGGTGGTGAAACTGGTGATTTACAGAGACTTTGTATCGATTTAGCCTGGTTCGTTGTGGGTGACATAGTCACGAGACCATGACTGTGTTTTCGTATGAAGTGTTCTTGTCATCTCTTTGCTCGTAATGGAAGCTCTAGCTCAGCTCTTCCACGCGAATAGTAGCTAAGATTTCTTAGAAATAATTGTACTTGTTAGTGCAATGATTTTCACAAGCTAGTCTCAGTTTTTGTTCTCTTTTTTTGGTATCTCGAGACGACTCACAACCTCTG</genome_strand>
        <mrna_strand>TGAAGTAATGATGATTGGCGACAGCCTTAAAGATGAT................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTGNCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACATCTTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAGCCTCCACGTAGCATTCCTGCATACACGTTTCTTTTGGTTTCTGCAAGATCATAGGAATTAGATTGCAGCTTTGCTCAAGTGAGATGATCATAATTCATTTTTCAAGCCAGAAATGGGGAATATGAGTTGTTTTTGTTCACTCTTGGTGGTGAAACTGGTGATTTACAGAGACTTTGTATCGATTTAGCCTGGTTCGTTGTGGGTGACATAGTCACGAGACCATGACTGTGTTTTCGTATGAAGTGTTCTTGTCATCTCTTTGCTCGTAATGGAAGCTCTAGCTCAGCTCTTCCACGCGAATAGTAGCTAAGATTTCTTAGAAATAATTGTACTTGTTAGTGCAATGATTTTCACAAGCTAGTCTCAGTTTTTGTTCTCTTTTTTTGGTATCTCGAGACGACTCACAACCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379532" ref_strand="+" ref_description="SGN-E379532 [TUS-3-L5]">
      <seq>tcgactccagattatgcctggtgctgctgaactttgtagttttcttgattctaggaatattagaaggggattaatcactagaaatgtcaaagatgcagttgacttgtttcatgaacgctttggagtgaaattttctcctgcactgagcagagaatatcgtccatacaaaccagatccagctccattgctgcacatttgttcaacttgggaagttcaatctaatgaagtaatgatgattggcgacagccttaaagatgatgttgcttgtggcaaacgagctggagcttttacttgcttgctcgacgaaagaggaaggtatgatgccccagaatatgcaaacgttcaacacaaaccagactataaggtgtcttctcttgttgaggttcagtcactactagaaagagatttcgagctgacatcttgatttttgcaaatctttggaacccctcctggcctggctgagcaacgagacatggtttaccctcgtaagcctccacgtagcattcctgcatacacgtttcttttggtttctgcaagatcataggaattagattgcagctttgctcaagtgagatgatcataattcatttttcaagccagaaatggggaatatgagttgtttttgttcactcttggtggtgaaactggtgatttacagagactttgtatcgatttagcctggttcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="15954" stop="10492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15654" g_stop="15635" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15634" i_stop="15550" i_length="85">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15549" g_stop="15507" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="63" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15506" i_stop="14009" i_length="1498">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14008" g_stop="13948" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="124" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13947" i_stop="11740" i_length="2208">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11739" g_stop="11605" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="259" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11604" i_stop="11221" i_length="384">
            <donor d_prob="0.551" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11220" g_stop="10792" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="688" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E379532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15654" e_stop="15635"/>
          <exon e_start="15549" e_stop="15507"/>
          <exon e_start="14008" e_stop="13948"/>
          <exon e_start="11739" e_stop="11605"/>
          <exon e_start="11220" e_stop="10792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTCCAGATTATGCCTGGTGAGGTTTTTTGTGTTTGGGGGTAAAAATTGAGTCTTTTTTTTTTAGTTTGTGGGTGTTTTTGACATTTTGATTTTGGTTTCAGGTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAGGTAAGACTGACTTATGGAATGTAGATTTTTGTCATTAGTTTTTAGTAAGTTACAGAGTTTGGTATCTCAAGCATTTCTAAAGGTTATTTGAGCATCTCTATTAGTTGCTATGTCTCCTTTACTGTATTTTCGAACTGCTTTGATATGCATTACTTGAGTTGAGGGTCTTTCGGGAGCAGTCTCTCTACCTCGTCGAGGTAAGGGCACTTTGTCGTCCTTAGTCCTCACATGTGCGATTACATTGAGTATGTTGTTGTTGGACTCAAATAGATCCAAAAGATATGGAGGATTCATATAGCTGAACTCAAGTACTTAATTCATTGCTCTTTTGTTTTCATGTGGAGGGGGTAATGGTATATAGTTGGGGAATGGAAAGGGAGAGTTGGGGTGAGAATTAAGCTTGTAGCTTAAGGATGGAAAGGAAGCTCCCACTTAAATTTTATTTACGATGTAATGTTTCTTGTGAGCTATGTGAGCTTTTCTCTTTGTTCAGTTCCACGATGACCAGTTTGAGCATTTTCCTACATCAAAGTAGTTATGGTTCCTGTCTGTCTCTCTCTTGACTTTGCCATCTGTTTTATAGTGTCCATTTCATGGCCTAAGATCTAATGTGCCTAATCTTTCTTTATCAATCCTTAACTTTGCTTATTCTTTGAAAAGTTTCCATCTTGAGGTGTGGTTGAGAGTTAAATTGCTTCATGCGATGAGGACACAGGGTATGCAGATCGGCCAGTTCTTTTAAACCAAGAAATCCAGTGTTCTCAAATCTCAACACCAACTGGAAGATCATGGACCTGCTTCTCTACCCATTTCTACTCAAATACGAGACCTCGTTCACTAGTCTGGATGTACGGTTACTGCACATTCCTCTTTGTACTACCTTCGGCTTCGCTAGTGAACCAAAGCCCTGATATGCAAATTGGCCAGATATTTTTTCCATTCTTTTGAGTACTTACTACAATATAATTCCCTGGCAATTTCTTGACATTCCTCTCATGTGTAAAACTTTTCTCTCAATTTAGTGGTCTTTTACTATTAGACTTCTGTTTTGTACTGTCTAAGGATGTATCACTTACTGTTTTACTCCTTTTTGACTGTCATGAGGATGTATCCAAATTATATTCAAATTGGTGTTGGAAAACTTCTCAAACTTAACTCTCTTGCGACAAAATTGTATACTTGTGAGTTAAATTTGCTTATATCTGTTAGAGGCATCTTACGTTATTTCATGCCCTTCCACCTTCAATCTCATTATTTTATGCCCTTCACTGCGGATGGATTCCCTTGGACCACACTTCTGATTCAATGAGAGAGATGACATATTTAAGGAAATGCTTCACATTTATGTGTTTGTGGTACTGGACAGATTTGATAAATGCTTCCCTCTTGTTAAGAAATACTGATATTGACTAAATGTAAAAGAAGAAGAAGGTTGTTATTTCATGTTTCTGGCTCTTCGTAAGAGAATAATTTAATTGTTTTGTGAATTCTATTACAGAAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGAGTAAGTATTTTTCCTTTCAGTTAAATATATGAAACAATTATTTTGGCATGAATTATATGTTGATATTGTATGCTGAAGTAAGTGAACAGGGGTAATTGGACTTTCCAAAAATAAAAGCCCATCCTAGTTCTATATAGGGATGAAACAAGAATCATCACTGCATAGGAGAAGGAAGAATATATCTTCTTTCTTATGCTTAAGTTTCTTTAGTTTGTGAAGTAAAGACAAATAGGAAAACCGAATGGATATTCAATATTAAAATAAATCTTCTCCACTCATTACCAGTCAGAGGATCACGAGCTGCTAAAGGTCGTGATGGCCTAAGATATTTGCGCAAATAGTGTGGTGGAGAATCTATACTTTTGTTATAGTCAAATAGAGAAGGGTAGCTCAACTAGAGGATGTATGGTTTCCATCACTAGTATGTTGCTCTAAGCTCCATTGTCATTTAGGGGAAGAAGGTATAGACAGTTCTGAGCTTATGAGAAGCAGATAACATGCTCAATTCATCTCTTTACAGGATCCGCCTTGTGGCTGAACAAGGATTTAAAAGATAATCTAAGACGCTTTTGTAACATTATGTAGAATTTCATGTAGCTGACACATGTAACACGGCCTCTTTCTGCTTTGTTAGCAAAATTAAAGGAAAGATAAGACTAAATCTGTAAATGATATTTAAAAGAAAAATAAGAGACTTTTTTCATGAAAAGAAACATGCAAACCTAGTAATAAGCAGAGATATGGGTGAAGTTGCAGTGAATTCATCTTCTCACTAAAAGTGAGAAAAAATCCCTGAGAGATTAAATTTTCTTGATCTTCTATCTACTTGGGTCCCGCTGTAGGTAGCTCACAAGTTATAAAACCAATGCAAAATCGTTCTGAATAGTCACAAGGAACTGTTCACTCCAGCTCTTAAATCCAATTGTTTGCTTGCTTTTTAGTAGTTTGCAACTGCAAAACTTTCTAGGATGCTCATGCATTTCTTTTGAGATAACACTTCTTTCAGCATTTAGGTAGCCAGCCATGTACTTTCTAAGATATTGTTATAGTTGGTTGATTCAACTGAGCTTAATGTGGCTGGTCAACCTCAACTTCAGTTCTGTGTCTGAGTAGATAATTACTGTGCCGTGTGAAATCCTGACAAATAATAGGAAGCATTGCGCGCCAGTTATCAGTGCCAGTATGGATGTGCTCAAAGAAGGGTCCACTCATGAATGATATTGTAGAGTAGTTTGCATTCTGGATAAGAATTTTGGAAAGAAAACACCCTATGCGCAAAAATTGCACTAATTCAAAGGTAAAAAAAGAGTGGAAATAATGCTGAAACAGTGCCGAGCCTGCAATACCTAGGCTTTAATACTTCAATAAATTTGTCCCCCCCCCCCCCGATTTATGTGTGGTATTTTTGCTCATCTTTTTGTATTCAGAAGTAGGCCCCCATGGCTTTGGTCTAGTGGTATGAATGCAAAATGTGATTATATGATGTCATGTGTGGGTGCACGTGACAAGTTTGAACTAACCCCAAACAAAAGATCGGTATTTAAATGGATAAGGGTAGAGAGTTAGGCACATTATCCACTGAGTTTCAAACTGTGTGCCACTGGCAGTCGAGGATTTCTCGTTTATAAAAAAAATCAGAAGAATCTAAAAAGGACAAGCCTCCTAATCTTTTCTGTTTTCCATCTGCGCAGGCACTATCTGCAGTTATTGAATCTCATTATTTGGAAATTAAAGATGGTGTTTGGATTGGGAAACAGTTTAGGGAGAATAGTCTTTTGGTTAGGTTTCCAGAGAACAGTTTTCTGAAGTGAACATATCCAAGAGGAGGAAATCTAATATGCATAGTAGTGTCTGAGTCCAAGAATGAGTGGACAAACTTCCCTTTCCCATCCTATTATTTAGTATCTTTCAGAATGAAAGAATAAGAGGTCATTTGCTTTAATTTTCTGGCCCCTTAGAATCTTGAATTCTAACTTCTAGAAAAAAAGGTAGCTTGAAATTTGAGTGGATTCTCCAGGTGTCTAAGGAAGCTTGATCTCTGAGTGGAGTCTCCAGGTGTTCCACTTATGGTTAATCGCCTGAGAAAAGAAATCTCTCCATTTCTGCTATAATATACCTCTCACCTCAGCTCAAGCTGTACGTTTAGTTCAATAGTCTTTATTACGTATACCATATAAAGCTCAAGTATAGAATCTCTTTTTGATACAGGTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGATGTGAGTTTCCTCTCAAGCTGACCGCCTTCTTCTCTTTCACGTCCACTCTTTGCAATAGGTGACTCAATGCATCGCTGTGAAAGATGTGACATTTTCCTTCGACTAAGTTCTTAACTAATTCATATAGGTAGTAATTGTGCTTGGCATATGATACTCAAAGCAATTTTCTGCTCGATCTAACTTTTGCTTGATCGTTAGCAGTTCTTAGCATACGAGCTTTGGCTCCCACCTCTAAGTTGTTAGTTTTATGATTTCTTGAGCCTTGTGAACTCTTTTTTTCGTTCATGCATGTCAGTCGTCATGCCATTTAGGAAGTCATGGTAAAATTCTAAGATATGTGTTGTTACTTACTTCCAATGAATATTTTTCGAGTTTGATATACAGGTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACATCTTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAGCCTCCACGTAGCATTCCTGCATACACGTTTCTTTTGGTTTCTGCAAGATCATAGGAATTAGATTGCAGCTTTGCTCAAGTGAGATGATCATAATTCATTTTTCAAGCCAGAAATGGGGAATATGAGTTGTTTTTGTTCACTCTTGGTGGTGAAACTGGTGATTTACAGAGACTTTGTATCGATTTAGCCTGGTTCGTT</genome_strand>
        <mrna_strand>TCGACTCCAGATTATGCCTG.....................................................................................GTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGAT................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACATCTTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAGCCTCCACGTAGCATTCCTGCATACACGTTTCTTTTGGTTTCTGCAAGATCATAGGAATTAGATTGCAGCTTTGCTCAAGTGAGATGATCATAATTCATTTTTCAAGCCAGAAATGGGGAATATGAGTTGTTTTTGTTCACTCTTGGTGGTGAAACTGGTGATTTACAGAGACTTTGTATCGATTTAGCCTGGTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393270" ref_strand="+" ref_description="SGN-E393270 [TUS-38-I22]">
      <seq>atcgactccagattatgcctggtgctgctgaactttgtagttttcttgattctaggaatattagaaggggattaatcactagaaatgtcaaagatgcagttgacttgtttcatgaacgctttggagtgaaattttctcctgcactgagcagagaatatcgtccatacaaaccagatccagctccattgctgcacatttgttcaacttgggaagttcaatctaatgaagtaatgatgattggcgacagccttaaagatgatgttgcttgtggcaaacgagctggagcttttacttgcttgctcgacgaaagaggaaggtatgatgccccagaatatgcaaacgttcaacacaaaccagactataaggtgtcttctcttgttgaggttcagtcactactagaaagagatttcgagctgacgtcgtgatttttgcaaatctttggaacccctcctggcctggctgagcaacgagacatggtttaccctcgtaaacctccacgtaacattcctgcatacacgtttctttttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="15955" stop="10650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15655" g_stop="15635" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15634" i_stop="15550" i_length="85">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15549" g_stop="15507" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="64" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15506" i_stop="14009" i_length="1498">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14008" g_stop="13948" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="125" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13947" i_stop="11740" i_length="2208">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11739" g_stop="11605" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="260" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11604" i_stop="11221" i_length="384">
            <donor d_prob="0.551" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11220" g_stop="10950" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="532" r_length="272" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E393270" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15655" e_stop="15635"/>
          <exon e_start="15549" e_stop="15507"/>
          <exon e_start="14008" e_stop="13948"/>
          <exon e_start="11739" e_stop="11605"/>
          <exon e_start="11220" e_stop="10950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACTCCAGATTATGCCTGGTGAGGTTTTTTGTGTTTGGGGGTAAAAATTGAGTCTTTTTTTTTTAGTTTGTGGGTGTTTTTGACATTTTGATTTTGGTTTCAGGTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAGGTAAGACTGACTTATGGAATGTAGATTTTTGTCATTAGTTTTTAGTAAGTTACAGAGTTTGGTATCTCAAGCATTTCTAAAGGTTATTTGAGCATCTCTATTAGTTGCTATGTCTCCTTTACTGTATTTTCGAACTGCTTTGATATGCATTACTTGAGTTGAGGGTCTTTCGGGAGCAGTCTCTCTACCTCGTCGAGGTAAGGGCACTTTGTCGTCCTTAGTCCTCACATGTGCGATTACATTGAGTATGTTGTTGTTGGACTCAAATAGATCCAAAAGATATGGAGGATTCATATAGCTGAACTCAAGTACTTAATTCATTGCTCTTTTGTTTTCATGTGGAGGGGGTAATGGTATATAGTTGGGGAATGGAAAGGGAGAGTTGGGGTGAGAATTAAGCTTGTAGCTTAAGGATGGAAAGGAAGCTCCCACTTAAATTTTATTTACGATGTAATGTTTCTTGTGAGCTATGTGAGCTTTTCTCTTTGTTCAGTTCCACGATGACCAGTTTGAGCATTTTCCTACATCAAAGTAGTTATGGTTCCTGTCTGTCTCTCTCTTGACTTTGCCATCTGTTTTATAGTGTCCATTTCATGGCCTAAGATCTAATGTGCCTAATCTTTCTTTATCAATCCTTAACTTTGCTTATTCTTTGAAAAGTTTCCATCTTGAGGTGTGGTTGAGAGTTAAATTGCTTCATGCGATGAGGACACAGGGTATGCAGATCGGCCAGTTCTTTTAAACCAAGAAATCCAGTGTTCTCAAATCTCAACACCAACTGGAAGATCATGGACCTGCTTCTCTACCCATTTCTACTCAAATACGAGACCTCGTTCACTAGTCTGGATGTACGGTTACTGCACATTCCTCTTTGTACTACCTTCGGCTTCGCTAGTGAACCAAAGCCCTGATATGCAAATTGGCCAGATATTTTTTCCATTCTTTTGAGTACTTACTACAATATAATTCCCTGGCAATTTCTTGACATTCCTCTCATGTGTAAAACTTTTCTCTCAATTTAGTGGTCTTTTACTATTAGACTTCTGTTTTGTACTGTCTAAGGATGTATCACTTACTGTTTTACTCCTTTTTGACTGTCATGAGGATGTATCCAAATTATATTCAAATTGGTGTTGGAAAACTTCTCAAACTTAACTCTCTTGCGACAAAATTGTATACTTGTGAGTTAAATTTGCTTATATCTGTTAGAGGCATCTTACGTTATTTCATGCCCTTCCACCTTCAATCTCATTATTTTATGCCCTTCACTGCGGATGGATTCCCTTGGACCACACTTCTGATTCAATGAGAGAGATGACATATTTAAGGAAATGCTTCACATTTATGTGTTTGTGGTACTGGACAGATTTGATAAATGCTTCCCTCTTGTTAAGAAATACTGATATTGACTAAATGTAAAAGAAGAAGAAGGTTGTTATTTCATGTTTCTGGCTCTTCGTAAGAGAATAATTTAATTGTTTTGTGAATTCTATTACAGAAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGAGTAAGTATTTTTCCTTTCAGTTAAATATATGAAACAATTATTTTGGCATGAATTATATGTTGATATTGTATGCTGAAGTAAGTGAACAGGGGTAATTGGACTTTCCAAAAATAAAAGCCCATCCTAGTTCTATATAGGGATGAAACAAGAATCATCACTGCATAGGAGAAGGAAGAATATATCTTCTTTCTTATGCTTAAGTTTCTTTAGTTTGTGAAGTAAAGACAAATAGGAAAACCGAATGGATATTCAATATTAAAATAAATCTTCTCCACTCATTACCAGTCAGAGGATCACGAGCTGCTAAAGGTCGTGATGGCCTAAGATATTTGCGCAAATAGTGTGGTGGAGAATCTATACTTTTGTTATAGTCAAATAGAGAAGGGTAGCTCAACTAGAGGATGTATGGTTTCCATCACTAGTATGTTGCTCTAAGCTCCATTGTCATTTAGGGGAAGAAGGTATAGACAGTTCTGAGCTTATGAGAAGCAGATAACATGCTCAATTCATCTCTTTACAGGATCCGCCTTGTGGCTGAACAAGGATTTAAAAGATAATCTAAGACGCTTTTGTAACATTATGTAGAATTTCATGTAGCTGACACATGTAACACGGCCTCTTTCTGCTTTGTTAGCAAAATTAAAGGAAAGATAAGACTAAATCTGTAAATGATATTTAAAAGAAAAATAAGAGACTTTTTTCATGAAAAGAAACATGCAAACCTAGTAATAAGCAGAGATATGGGTGAAGTTGCAGTGAATTCATCTTCTCACTAAAAGTGAGAAAAAATCCCTGAGAGATTAAATTTTCTTGATCTTCTATCTACTTGGGTCCCGCTGTAGGTAGCTCACAAGTTATAAAACCAATGCAAAATCGTTCTGAATAGTCACAAGGAACTGTTCACTCCAGCTCTTAAATCCAATTGTTTGCTTGCTTTTTAGTAGTTTGCAACTGCAAAACTTTCTAGGATGCTCATGCATTTCTTTTGAGATAACACTTCTTTCAGCATTTAGGTAGCCAGCCATGTACTTTCTAAGATATTGTTATAGTTGGTTGATTCAACTGAGCTTAATGTGGCTGGTCAACCTCAACTTCAGTTCTGTGTCTGAGTAGATAATTACTGTGCCGTGTGAAATCCTGACAAATAATAGGAAGCATTGCGCGCCAGTTATCAGTGCCAGTATGGATGTGCTCAAAGAAGGGTCCACTCATGAATGATATTGTAGAGTAGTTTGCATTCTGGATAAGAATTTTGGAAAGAAAACACCCTATGCGCAAAAATTGCACTAATTCAAAGGTAAAAAAAGAGTGGAAATAATGCTGAAACAGTGCCGAGCCTGCAATACCTAGGCTTTAATACTTCAATAAATTTGTCCCCCCCCCCCCCGATTTATGTGTGGTATTTTTGCTCATCTTTTTGTATTCAGAAGTAGGCCCCCATGGCTTTGGTCTAGTGGTATGAATGCAAAATGTGATTATATGATGTCATGTGTGGGTGCACGTGACAAGTTTGAACTAACCCCAAACAAAAGATCGGTATTTAAATGGATAAGGGTAGAGAGTTAGGCACATTATCCACTGAGTTTCAAACTGTGTGCCACTGGCAGTCGAGGATTTCTCGTTTATAAAAAAAATCAGAAGAATCTAAAAAGGACAAGCCTCCTAATCTTTTCTGTTTTCCATCTGCGCAGGCACTATCTGCAGTTATTGAATCTCATTATTTGGAAATTAAAGATGGTGTTTGGATTGGGAAACAGTTTAGGGAGAATAGTCTTTTGGTTAGGTTTCCAGAGAACAGTTTTCTGAAGTGAACATATCCAAGAGGAGGAAATCTAATATGCATAGTAGTGTCTGAGTCCAAGAATGAGTGGACAAACTTCCCTTTCCCATCCTATTATTTAGTATCTTTCAGAATGAAAGAATAAGAGGTCATTTGCTTTAATTTTCTGGCCCCTTAGAATCTTGAATTCTAACTTCTAGAAAAAAAGGTAGCTTGAAATTTGAGTGGATTCTCCAGGTGTCTAAGGAAGCTTGATCTCTGAGTGGAGTCTCCAGGTGTTCCACTTATGGTTAATCGCCTGAGAAAAGAAATCTCTCCATTTCTGCTATAATATACCTCTCACCTCAGCTCAAGCTGTACGTTTAGTTCAATAGTCTTTATTACGTATACCATATAAAGCTCAAGTATAGAATCTCTTTTTGATACAGGTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGATGTGAGTTTCCTCTCAAGCTGACCGCCTTCTTCTCTTTCACGTCCACTCTTTGCAATAGGTGACTCAATGCATCGCTGTGAAAGATGTGACATTTTCCTTCGACTAAGTTCTTAACTAATTCATATAGGTAGTAATTGTGCTTGGCATATGATACTCAAAGCAATTTTCTGCTCGATCTAACTTTTGCTTGATCGTTAGCAGTTCTTAGCATACGAGCTTTGGCTCCCACCTCTAAGTTGTTAGTTTTATGATTTCTTGAGCCTTGTGAACTCTTTTTTTCGTTCATGCATGTCAGTCGTCATGCCATTTAGGAAGTCATGGTAAAATTCTAAGATATGTGTTGTTACTTACTTCCAATGAATATTTTTCGAGTTTGATATACAGGTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACATCTTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAGCCTCCACGTAGCATTCCTGCATACACGTTTC-TTTTGGTTT</genome_strand>
        <mrna_strand>ATCGACTCCAGATTATGCCTG.....................................................................................GTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGAT................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACGTCGTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAACCTCCACGTAACATTCCTGCATACACGTTTCTTTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345701" ref_strand="+" ref_description="SGN-E345701 [cTOF-18-L21]">
      <seq>actgatcagtgccacttgtttttctttgctaaaatacacagcccattgaaacctctcaccattcattatctgcagaataaataaatgcatcttcttctgtcaaaagcttccctttttttcaatccaagagttattttttcttcttcaacaacaatggctacatctacttcaatttctgtttcttcaaaaccccgtttaaagggtattgtatttgacatggacggaaccctaacggtccctgttattgattttcaggccatgtacagggctgttctgggtcatgatgaataccttgctgttaaatctaagaacccttctgggattgatattttgcaccacattgaaagttggagccctgataagcaacgtagggcatatgaggttattgctgattatgaaaaacagggtcttgatcgactccagattatgcctggtgctgctgaactttgtagttttcttgattctaggaatattagaaggggattaatcactagaaatgtcaaagatgcagttgacttgtttcatgaacgctttggagtgaaattttctcctgcactgagcagagaatatcgtccatacaaaccagatccagctccattgctgcacatttgttcaacttgggaagttcaatctaatgaagtaatgatgattggcgacagccttaaagatgatgttgcttgtggcaaacgagctggagcttttacttgcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="16368" stop="10880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16068" g_stop="15635" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15634" i_stop="15550" i_length="85">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15549" g_stop="15507" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="476" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15506" i_stop="14009" i_length="1498">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14008" g_stop="13948" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="537" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13947" i_stop="11740" i_length="2208">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11739" g_stop="11605" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="672" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11604" i_stop="11221" i_length="384">
            <donor d_prob="0.551" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11220" g_stop="11180" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="713" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E345701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16068" e_stop="15635"/>
          <exon e_start="15549" e_stop="15507"/>
          <exon e_start="14008" e_stop="13948"/>
          <exon e_start="11739" e_stop="11605"/>
          <exon e_start="11220" e_stop="11180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCAGTGCCACTTGTTTTTCTTTGCTAAAATCACACAGCCCATTGAAACCTCTCACCATTCATTATCTGCAGAATAAATAAATGCATCTTCTTCTGTCAAAAGCTTCCCTTTTTTTCAATCCAAGAGTTATTTTTTCTTCTTCAACAACAATGGCTACATCTACTTCAATTTCTGTTTCTTCAAAACCCCGTTTAAAGGGTATTGTATTTGACATGGACGGAACCCTAACGGTCCCTGTTATTGATTTTCAGGCCATGTACAGGGCTGTTCTGGGTCATGATGAATACCTTGCTGTTAAATCTAAGAACCCTTCTGGGATTGATATTTTGCACCACATTGAAAGTTGGAGCCCTGATAAGCAACGTAGGGCATATGAGGTTATTGCTGATTATGAAAAACAGGGTCTTGATCGACTCCAGATTATGCCTGGTGAGGTTTTTTGTGTTTGGGGGTAAAAATTGAGTCTTTTTTTTTTAGTTTGTGGGTGTTTTTGACATTTTGATTTTGGTTTCAGGTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAGGTAAGACTGACTTATGGAATGTAGATTTTTGTCATTAGTTTTTAGTAAGTTACAGAGTTTGGTATCTCAAGCATTTCTAAAGGTTATTTGAGCATCTCTATTAGTTGCTATGTCTCCTTTACTGTATTTTCGAACTGCTTTGATATGCATTACTTGAGTTGAGGGTCTTTCGGGAGCAGTCTCTCTACCTCGTCGAGGTAAGGGCACTTTGTCGTCCTTAGTCCTCACATGTGCGATTACATTGAGTATGTTGTTGTTGGACTCAAATAGATCCAAAAGATATGGAGGATTCATATAGCTGAACTCAAGTACTTAATTCATTGCTCTTTTGTTTTCATGTGGAGGGGGTAATGGTATATAGTTGGGGAATGGAAAGGGAGAGTTGGGGTGAGAATTAAGCTTGTAGCTTAAGGATGGAAAGGAAGCTCCCACTTAAATTTTATTTACGATGTAATGTTTCTTGTGAGCTATGTGAGCTTTTCTCTTTGTTCAGTTCCACGATGACCAGTTTGAGCATTTTCCTACATCAAAGTAGTTATGGTTCCTGTCTGTCTCTCTCTTGACTTTGCCATCTGTTTTATAGTGTCCATTTCATGGCCTAAGATCTAATGTGCCTAATCTTTCTTTATCAATCCTTAACTTTGCTTATTCTTTGAAAAGTTTCCATCTTGAGGTGTGGTTGAGAGTTAAATTGCTTCATGCGATGAGGACACAGGGTATGCAGATCGGCCAGTTCTTTTAAACCAAGAAATCCAGTGTTCTCAAATCTCAACACCAACTGGAAGATCATGGACCTGCTTCTCTACCCATTTCTACTCAAATACGAGACCTCGTTCACTAGTCTGGATGTACGGTTACTGCACATTCCTCTTTGTACTACCTTCGGCTTCGCTAGTGAACCAAAGCCCTGATATGCAAATTGGCCAGATATTTTTTCCATTCTTTTGAGTACTTACTACAATATAATTCCCTGGCAATTTCTTGACATTCCTCTCATGTGTAAAACTTTTCTCTCAATTTAGTGGTCTTTTACTATTAGACTTCTGTTTTGTACTGTCTAAGGATGTATCACTTACTGTTTTACTCCTTTTTGACTGTCATGAGGATGTATCCAAATTATATTCAAATTGGTGTTGGAAAACTTCTCAAACTTAACTCTCTTGCGACAAAATTGTATACTTGTGAGTTAAATTTGCTTATATCTGTTAGAGGCATCTTACGTTATTTCATGCCCTTCCACCTTCAATCTCATTATTTTATGCCCTTCACTGCGGATGGATTCCCTTGGACCACACTTCTGATTCAATGAGAGAGATGACATATTTAAGGAAATGCTTCACATTTATGTGTTTGTGGTACTGGACAGATTTGATAAATGCTTCCCTCTTGTTAAGAAATACTGATATTGACTAAATGTAAAAGAAGAAGAAGGTTGTTATTTCATGTTTCTGGCTCTTCGTAAGAGAATAATTTAATTGTTTTGTGAATTCTATTACAGAAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGAGTAAGTATTTTTCCTTTCAGTTAAATATATGAAACAATTATTTTGGCATGAATTATATGTTGATATTGTATGCTGAAGTAAGTGAACAGGGGTAATTGGACTTTCCAAAAATAAAAGCCCATCCTAGTTCTATATAGGGATGAAACAAGAATCATCACTGCATAGGAGAAGGAAGAATATATCTTCTTTCTTATGCTTAAGTTTCTTTAGTTTGTGAAGTAAAGACAAATAGGAAAACCGAATGGATATTCAATATTAAAATAAATCTTCTCCACTCATTACCAGTCAGAGGATCACGAGCTGCTAAAGGTCGTGATGGCCTAAGATATTTGCGCAAATAGTGTGGTGGAGAATCTATACTTTTGTTATAGTCAAATAGAGAAGGGTAGCTCAACTAGAGGATGTATGGTTTCCATCACTAGTATGTTGCTCTAAGCTCCATTGTCATTTAGGGGAAGAAGGTATAGACAGTTCTGAGCTTATGAGAAGCAGATAACATGCTCAATTCATCTCTTTACAGGATCCGCCTTGTGGCTGAACAAGGATTTAAAAGATAATCTAAGACGCTTTTGTAACATTATGTAGAATTTCATGTAGCTGACACATGTAACACGGCCTCTTTCTGCTTTGTTAGCAAAATTAAAGGAAAGATAAGACTAAATCTGTAAATGATATTTAAAAGAAAAATAAGAGACTTTTTTCATGAAAAGAAACATGCAAACCTAGTAATAAGCAGAGATATGGGTGAAGTTGCAGTGAATTCATCTTCTCACTAAAAGTGAGAAAAAATCCCTGAGAGATTAAATTTTCTTGATCTTCTATCTACTTGGGTCCCGCTGTAGGTAGCTCACAAGTTATAAAACCAATGCAAAATCGTTCTGAATAGTCACAAGGAACTGTTCACTCCAGCTCTTAAATCCAATTGTTTGCTTGCTTTTTAGTAGTTTGCAACTGCAAAACTTTCTAGGATGCTCATGCATTTCTTTTGAGATAACACTTCTTTCAGCATTTAGGTAGCCAGCCATGTACTTTCTAAGATATTGTTATAGTTGGTTGATTCAACTGAGCTTAATGTGGCTGGTCAACCTCAACTTCAGTTCTGTGTCTGAGTAGATAATTACTGTGCCGTGTGAAATCCTGACAAATAATAGGAAGCATTGCGCGCCAGTTATCAGTGCCAGTATGGATGTGCTCAAAGAAGGGTCCACTCATGAATGATATTGTAGAGTAGTTTGCATTCTGGATAAGAATTTTGGAAAGAAAACACCCTATGCGCAAAAATTGCACTAATTCAAAGGTAAAAAAAGAGTGGAAATAATGCTGAAACAGTGCCGAGCCTGCAATACCTAGGCTTTAATACTTCAATAAATTTGTCCCCCCCCCCCCCGATTTATGTGTGGTATTTTTGCTCATCTTTTTGTATTCAGAAGTAGGCCCCCATGGCTTTGGTCTAGTGGTATGAATGCAAAATGTGATTATATGATGTCATGTGTGGGTGCACGTGACAAGTTTGAACTAACCCCAAACAAAAGATCGGTATTTAAATGGATAAGGGTAGAGAGTTAGGCACATTATCCACTGAGTTTCAAACTGTGTGCCACTGGCAGTCGAGGATTTCTCGTTTATAAAAAAAATCAGAAGAATCTAAAAAGGACAAGCCTCCTAATCTTTTCTGTTTTCCATCTGCGCAGGCACTATCTGCAGTTATTGAATCTCATTATTTGGAAATTAAAGATGGTGTTTGGATTGGGAAACAGTTTAGGGAGAATAGTCTTTTGGTTAGGTTTCCAGAGAACAGTTTTCTGAAGTGAACATATCCAAGAGGAGGAAATCTAATATGCATAGTAGTGTCTGAGTCCAAGAATGAGTGGACAAACTTCCCTTTCCCATCCTATTATTTAGTATCTTTCAGAATGAAAGAATAAGAGGTCATTTGCTTTAATTTTCTGGCCCCTTAGAATCTTGAATTCTAACTTCTAGAAAAAAAGGTAGCTTGAAATTTGAGTGGATTCTCCAGGTGTCTAAGGAAGCTTGATCTCTGAGTGGAGTCTCCAGGTGTTCCACTTATGGTTAATCGCCTGAGAAAAGAAATCTCTCCATTTCTGCTATAATATACCTCTCACCTCAGCTCAAGCTGTACGTTTAGTTCAATAGTCTTTATTACGTATACCATATAAAGCTCAAGTATAGAATCTCTTTTTGATACAGGTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGATGTGAGTTTCCTCTCAAGCTGACCGCCTTCTTCTCTTTCACGTCCACTCTTTGCAATAGGTGACTCAATGCATCGCTGTGAAAGATGTGACATTTTCCTTCGACTAAGTTCTTAACTAATTCATATAGGTAGTAATTGTGCTTGGCATATGATACTCAAAGCAATTTTCTGCTCGATCTAACTTTTGCTTGATCGTTAGCAGTTCTTAGCATACGAGCTTTGGCTCCCACCTCTAAGTTGTTAGTTTTATGATTTCTTGAGCCTTGTGAACTCTTTTTTTCGTTCATGCATGTCAGTCGTCATGCCATTTAGGAAGTCATGGTAAAATTCTAAGATATGTGTTGTTACTTACTTCCAATGAATATTTTTCGAGTTTGATATACAGGTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCT</genome_strand>
        <mrna_strand>ACTGATCAGTGCCACTTGTTTTTCTTTGCTAAAAT-ACACAGCCCATTGAAACCTCTCACCATTCATTATCTGCAGAATAAATAAATGCATCTTCTTCTGTCAAAAGCTTCCCTTTTTTTCAATCCAAGAGTTATTTTTTCTTCTTCAACAACAATGGCTACATCTACTTCAATTTCTGTTTCTTCAAAACCCCGTTTAAAGGGTATTGTATTTGACATGGACGGAACCCTAACGGTCCCTGTTATTGATTTTCAGGCCATGTACAGGGCTGTTCTGGGTCATGATGAATACCTTGCTGTTAAATCTAAGAACCCTTCTGGGATTGATATTTTGCACCACATTGAAAGTTGGAGCCCTGATAAGCAACGTAGGGCATATGAGGTTATTGCTGATTATGAAAAACAGGGTCTTGATCGACTCCAGATTATGCCTG.....................................................................................GTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGAT................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323043" ref_strand="+" ref_description="SGN-E323043 [cTOB-28-I13]">
      <seq>atctttgtcatcttctccaacaaaccaaatctttaaaaaaaatccctttttttttctctttccactgatcagtgccacttgtttttctttgctaaaatcacacagcccattgaaacctctcaccattcattatctgcagaataaataaatgcatcttcttctgtcaaaagcttccctttttttcaatccaagagttattttttcttcttcaacaacaatggctacatctacttcaatttctgtttcttcaaaaccccgtttaaagggtattgtatttgacatggacggaaccctaacggtccctgttattgattttcaggccatgtacagggctgttctgggtcatgatgaataccttgctgttaaatctaagaacccttctgggattgatattttgcaccacattgaaagttggagccctgataagcaacgtagggcatatgaggttattgctgattatgaaaaacagggtcttgatcgactccagattatgcctggtgctgctgaactttgtagttttcttgattctangaatattagaaggggattaatcactagaaatgtcaaagatgcagttgacttgtttcatgaacgctttggagtgaaattttctcctgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="16431" stop="11419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16131" g_stop="15635" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15634" i_stop="15550" i_length="85">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15549" g_stop="15507" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="540" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15506" i_stop="14009" i_length="1498">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14008" g_stop="13948" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="601" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13947" i_stop="11740" i_length="2208">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11739" g_stop="11719" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="622" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E323043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16131" e_stop="15635"/>
          <exon e_start="15549" e_stop="15507"/>
          <exon e_start="14008" e_stop="13948"/>
          <exon e_start="11739" e_stop="11719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTCATCTTCTCCAACAAACCAAATCTTTAAAAAAAATCCCTTTTTTTTTCTCTTTCCACTGATCAGTGCCACTTGTTTTTCTTTGCTAAAATCACACAGCCCATTGAAACCTCTCACCATTCATTATCTGCAGAATAAATAAATGCATCTTCTTCTGTCAAAAGCTTCCCTTTTTTTCAATCCAAGAGTTATTTTTTCTTCTTCAACAACAATGGCTACATCTACTTCAATTTCTGTTTCTTCAAAACCCCGTTTAAAGGGTATTGTATTTGACATGGACGGAACCCTAACGGTCCCTGTTATTGATTTTCAGGCCATGTACAGGGCTGTTCTGGGTCATGATGAATACCTTGCTGTTAAATCTAAGAACCCTTCTGGGATTGATATTTTGCACCACATTGAAAGTTGGAGCCCTGATAAGCAACGTAGGGCATATGAGGTTATTGCTGATTATGAAAAACAGGGTCTTGATCGACTCCAGATTATGCCTGGTGAGGTTTTTTGTGTTTGGGGGTAAAAATTGAGTCTTTTTTTTTTAGTTTGTGGGTGTTTTTGACATTTTGATTTTGGTTTCAGGTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAGGTAAGACTGACTTATGGAATGTAGATTTTTGTCATTAGTTTTTAGTAAGTTACAGAGTTTGGTATCTCAAGCATTTCTAAAGGTTATTTGAGCATCTCTATTAGTTGCTATGTCTCCTTTACTGTATTTTCGAACTGCTTTGATATGCATTACTTGAGTTGAGGGTCTTTCGGGAGCAGTCTCTCTACCTCGTCGAGGTAAGGGCACTTTGTCGTCCTTAGTCCTCACATGTGCGATTACATTGAGTATGTTGTTGTTGGACTCAAATAGATCCAAAAGATATGGAGGATTCATATAGCTGAACTCAAGTACTTAATTCATTGCTCTTTTGTTTTCATGTGGAGGGGGTAATGGTATATAGTTGGGGAATGGAAAGGGAGAGTTGGGGTGAGAATTAAGCTTGTAGCTTAAGGATGGAAAGGAAGCTCCCACTTAAATTTTATTTACGATGTAATGTTTCTTGTGAGCTATGTGAGCTTTTCTCTTTGTTCAGTTCCACGATGACCAGTTTGAGCATTTTCCTACATCAAAGTAGTTATGGTTCCTGTCTGTCTCTCTCTTGACTTTGCCATCTGTTTTATAGTGTCCATTTCATGGCCTAAGATCTAATGTGCCTAATCTTTCTTTATCAATCCTTAACTTTGCTTATTCTTTGAAAAGTTTCCATCTTGAGGTGTGGTTGAGAGTTAAATTGCTTCATGCGATGAGGACACAGGGTATGCAGATCGGCCAGTTCTTTTAAACCAAGAAATCCAGTGTTCTCAAATCTCAACACCAACTGGAAGATCATGGACCTGCTTCTCTACCCATTTCTACTCAAATACGAGACCTCGTTCACTAGTCTGGATGTACGGTTACTGCACATTCCTCTTTGTACTACCTTCGGCTTCGCTAGTGAACCAAAGCCCTGATATGCAAATTGGCCAGATATTTTTTCCATTCTTTTGAGTACTTACTACAATATAATTCCCTGGCAATTTCTTGACATTCCTCTCATGTGTAAAACTTTTCTCTCAATTTAGTGGTCTTTTACTATTAGACTTCTGTTTTGTACTGTCTAAGGATGTATCACTTACTGTTTTACTCCTTTTTGACTGTCATGAGGATGTATCCAAATTATATTCAAATTGGTGTTGGAAAACTTCTCAAACTTAACTCTCTTGCGACAAAATTGTATACTTGTGAGTTAAATTTGCTTATATCTGTTAGAGGCATCTTACGTTATTTCATGCCCTTCCACCTTCAATCTCATTATTTTATGCCCTTCACTGCGGATGGATTCCCTTGGACCACACTTCTGATTCAATGAGAGAGATGACATATTTAAGGAAATGCTTCACATTTATGTGTTTGTGGTACTGGACAGATTTGATAAATGCTTCCCTCTTGTTAAGAAATACTGATATTGACTAAATGTAAAAGAAGAAGAAGGTTGTTATTTCATGTTTCTGGCTCTTCGTAAGAGAATAATTTAATTGTTTTGTGAATTCTATTACAGAAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGAGTAAGTATTTTTCCTTTCAGTTAAATATATGAAACAATTATTTTGGCATGAATTATATGTTGATATTGTATGCTGAAGTAAGTGAACAGGGGTAATTGGACTTTCCAAAAATAAAAGCCCATCCTAGTTCTATATAGGGATGAAACAAGAATCATCACTGCATAGGAGAAGGAAGAATATATCTTCTTTCTTATGCTTAAGTTTCTTTAGTTTGTGAAGTAAAGACAAATAGGAAAACCGAATGGATATTCAATATTAAAATAAATCTTCTCCACTCATTACCAGTCAGAGGATCACGAGCTGCTAAAGGTCGTGATGGCCTAAGATATTTGCGCAAATAGTGTGGTGGAGAATCTATACTTTTGTTATAGTCAAATAGAGAAGGGTAGCTCAACTAGAGGATGTATGGTTTCCATCACTAGTATGTTGCTCTAAGCTCCATTGTCATTTAGGGGAAGAAGGTATAGACAGTTCTGAGCTTATGAGAAGCAGATAACATGCTCAATTCATCTCTTTACAGGATCCGCCTTGTGGCTGAACAAGGATTTAAAAGATAATCTAAGACGCTTTTGTAACATTATGTAGAATTTCATGTAGCTGACACATGTAACACGGCCTCTTTCTGCTTTGTTAGCAAAATTAAAGGAAAGATAAGACTAAATCTGTAAATGATATTTAAAAGAAAAATAAGAGACTTTTTTCATGAAAAGAAACATGCAAACCTAGTAATAAGCAGAGATATGGGTGAAGTTGCAGTGAATTCATCTTCTCACTAAAAGTGAGAAAAAATCCCTGAGAGATTAAATTTTCTTGATCTTCTATCTACTTGGGTCCCGCTGTAGGTAGCTCACAAGTTATAAAACCAATGCAAAATCGTTCTGAATAGTCACAAGGAACTGTTCACTCCAGCTCTTAAATCCAATTGTTTGCTTGCTTTTTAGTAGTTTGCAACTGCAAAACTTTCTAGGATGCTCATGCATTTCTTTTGAGATAACACTTCTTTCAGCATTTAGGTAGCCAGCCATGTACTTTCTAAGATATTGTTATAGTTGGTTGATTCAACTGAGCTTAATGTGGCTGGTCAACCTCAACTTCAGTTCTGTGTCTGAGTAGATAATTACTGTGCCGTGTGAAATCCTGACAAATAATAGGAAGCATTGCGCGCCAGTTATCAGTGCCAGTATGGATGTGCTCAAAGAAGGGTCCACTCATGAATGATATTGTAGAGTAGTTTGCATTCTGGATAAGAATTTTGGAAAGAAAACACCCTATGCGCAAAAATTGCACTAATTCAAAGGTAAAAAAAGAGTGGAAATAATGCTGAAACAGTGCCGAGCCTGCAATACCTAGGCTTTAATACTTCAATAAATTTGTCCCCCCCCCCCCCGATTTATGTGTGGTATTTTTGCTCATCTTTTTGTATTCAGAAGTAGGCCCCCATGGCTTTGGTCTAGTGGTATGAATGCAAAATGTGATTATATGATGTCATGTGTGGGTGCACGTGACAAGTTTGAACTAACCCCAAACAAAAGATCGGTATTTAAATGGATAAGGGTAGAGAGTTAGGCACATTATCCACTGAGTTTCAAACTGTGTGCCACTGGCAGTCGAGGATTTCTCGTTTATAAAAAAAATCAGAAGAATCTAAAAAGGACAAGCCTCCTAATCTTTTCTGTTTTCCATCTGCGCAGGCACTATCTGCAGTTATTGAATCTCATTATTTGGAAATTAAAGATGGTGTTTGGATTGGGAAACAGTTTAGGGAGAATAGTCTTTTGGTTAGGTTTCCAGAGAACAGTTTTCTGAAGTGAACATATCCAAGAGGAGGAAATCTAATATGCATAGTAGTGTCTGAGTCCAAGAATGAGTGGACAAACTTCCCTTTCCCATCCTATTATTTAGTATCTTTCAGAATGAAAGAATAAGAGGTCATTTGCTTTAATTTTCTGGCCCCTTAGAATCTTGAATTCTAACTTCTAGAAAAAAAGGTAGCTTGAAATTTGAGTGGATTCTCCAGGTGTCTAAGGAAGCTTGATCTCTGAGTGGAGTCTCCAGGTGTTCCACTTATGGTTAATCGCCTGAGAAAAGAAATCTCTCCATTTCTGCTATAATATACCTCTCACCTCAGCTCAAGCTGTACGTTTAGTTCAATAGTCTTTATTACGTATACCATATAAAGCTCAAGTATAGAATCTCTTTTTGATACAGGTGAAATTTTCTCCTGCACTG</genome_strand>
        <mrna_strand>ATCTTTGTCATCTTCTCCAACAAACCAAATCTTTAAAAAAAATCCCTTTTTTTTTCTCTTTCCACTGATCAGTGCCACTTGTTTTTCTTTGCTAAAATCACACAGCCCATTGAAACCTCTCACCATTCATTATCTGCAGAATAAATAAATGCATCTTCTTCTGTCAAAAGCTTCCCTTTTTTTCAATCCAAGAGTTATTTTTTCTTCTTCAACAACAATGGCTACATCTACTTCAATTTCTGTTTCTTCAAAACCCCGTTTAAAGGGTATTGTATTTGACATGGACGGAACCCTAACGGTCCCTGTTATTGATTTTCAGGCCATGTACAGGGCTGTTCTGGGTCATGATGAATACCTTGCTGTTAAATCTAAGAACCCTTCTGGGATTGATATTTTGCACCACATTGAAAGTTGGAGCCCTGATAAGCAACGTAGGGCATATGAGGTTATTGCTGATTATGAAAAACAGGGTCTTGATCGACTCCAGATTATGCCTG.....................................................................................GTGCTGCTGAACTTTGTAGTTTTCTTGATTCTANGAATATTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTTCTCCTGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441620" ref_strand="+" ref_description="SGN-E441620 [cSTA-31-C19]">
      <seq>gccaaagaggagattgaggaggtgggaaaggaaacgaaacaaaagaagaaaaagaagaagaagaaaaagaaagagaagatcaataaaaatgctgtaaatgaagctgaaggaaatgaagagtcaccagctgtcactgatggaaatgatgatcaagaacaagattcagtagatgaaactgaatattatgcatggaatgaactgagacttcatccactgctcatgaaatcgatatacgcgctcaagttcaaagaacctacaccaatacagaaagcgtgcattcctgcaggtgctcaccaaggaaaggatgttgtgggtgctgcagagacaggttcagggaaaacactggcatttggtctgcccattcttcaacgtctgcttgaggagcgagaaaaggccgaaaggcagctcccagaaaatggagaattggatgaaaaagttgcctcggcaggtctcctccgcgctctaattattactcccacaagagagcttgcccttcaggtcactgatcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="19071" stop="21099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19369" g_stop="19501" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20332" g_stop="20504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="303" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20590" g_stop="20784" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="498" r_length="195" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E441620" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19369" e_stop="19501"/>
          <exon e_start="20332" e_stop="20504"/>
          <exon e_start="20590" e_stop="20784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTGGTTAGTGTTGCATTAAAATCTGATATTTTCCTTTTTGTAAAGGCTTCTCAATTTTTAAGTTTAGTATAATGCTAACTTGTTCTTTCATTGAGTCTCTGGATGTTTTCATAATTCCTGAAATTCTGGTATCAGTCGGTCAATTTCAAGTGAATGTCTATGGGTAACAACCTTTAATCACATTGGCGAATCTTTCAACAATTTTATTGTTAGTTAGGTATTTACTGGATGTCAATTCTTTAATATCTTGACCTATTGTTTCACTAAGCTATGTTCTGTGTTTTGGGTTCTTGAAATGGCTTTGTAAGTGATATATATTGTGTCAGTTGAATTCAGTTCCAGTAATAAAATAGAAATTTTACCTCTGCTTGAATGTTGGAAGAATGCAAGGTAAATGCAAGGAGTTAGACCAGAAGGATATGTGATTCTTTCCCTCAATTTATTGGCCATTCATCAGGTTTCTAATTGTTATAAATATAAAAGAAAAAAGAAAAACAGTAGGCATACTTTCATATACTTGCTATTCCTACAAGTTCTTCTAAATATTCTATTGCTGCGAGTGGTGCTCACTAGAAAGCTTTTGACCTACTTCCGTTTAACTGTTTTTATATATAGACAATGTTAACTTGCACGAATTTGGAGTAGACTAATATGTTTATTTGGAAAAGAAACTGGTGTGAGTTAATGTTGCAGTCAATAGAGTCCTTAATTACTCTTTCTGAACGACTGACTAGGATCTCGTCCATTGGTTTTATCATTGCAACATGATCTCACGTTGAAGACTTCTCTTATGATTTGGTATTAATTCTCGTTTTGAAATCTGACTCGAACAGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAGGTTGGTTATGTGATAAAAATCAAGGTATCTCACTGGAGATGATGTCATATACCATGATATTTATGCTGGTTGTTTTGTGTGCCAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAG</genome_strand>
        <mrna_strand>GCCAAAGAGGAGATTGAGGAGGTGGGAAAGGAAACGAAACAAAAGAAGAAAAAG-A-A-GAAGAAGAAAAAGAAAGAGAAGATCAATAAAAATGCTGTAAATGAAGCTGAAGGAAATGAAGAGTCACCAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGATGGAAATGATGATCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAGAAAGCGTGCATTCCTGCAGGTGCTCACCAAGGAAAG.....................................................................................GATGTTGTGGGTGCTGCAGAGACAGGTTCAGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTCCCAGAAAATGGAGAATTGGATGAAAAAGTTGCCTCGGCAGGTCTCCTCCGCGCTCTAATTATTACTCCCACAAGAGAGCTTGCCCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441619" ref_strand="+" ref_description="SGN-E441619 [cSTA-31-C19]">
      <seq>gcaaagaggagattgaggaggtgggaaaggaaacgaaacaaaagaagaaaaagaagaagaagaaaaagaaagagaagatcaataaaaatgctgtaaatgaagctgaaggaaatgaagagtcaccagctgtcactgatggaaatgatgatcaagaacaagattcagtagatgaaactgaatattatgcatggaatgaactgagacttcatccactgctcatgaaatcgatatacgcgctcaagttcaaagaacctacaccaatacagaaagcgtgcattcctgcaggtgctcaccaaggaaaggatgttgtgggtgctgcagagacaggttcagggaaaacactggcatttggtctgcccattcttcaacgtctgcttgaggagcgagaaaaggccgaaaggcagctcccagaaaatggagaattggatgaaaaagttgcctcggcaggtctcctccgcgctctaattattactcccacaagagagcttgcccttcaggtcactgatcatctgaaggaagcagcaagacattccaattttagggttgtccctattgttggtggaatgtcaagtgaaaaacaagaaagacttttgaaacaaggcctgaaattgttgtcggaactccggggaggctttgggagcttatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="19070" stop="21965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19370" g_stop="19501" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20332" g_stop="20504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="302" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20590" g_stop="20784" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="497" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20785" i_stop="21513" i_length="729">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21514" g_stop="21665" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="648" r_length="151" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E441619" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19370" e_stop="19501"/>
          <exon e_start="20332" e_stop="20504"/>
          <exon e_start="20590" e_stop="20784"/>
          <exon e_start="21514" e_stop="21665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTGGTTAGTGTTGCATTAAAATCTGATATTTTCCTTTTTGTAAAGGCTTCTCAATTTTTAAGTTTAGTATAATGCTAACTTGTTCTTTCATTGAGTCTCTGGATGTTTTCATAATTCCTGAAATTCTGGTATCAGTCGGTCAATTTCAAGTGAATGTCTATGGGTAACAACCTTTAATCACATTGGCGAATCTTTCAACAATTTTATTGTTAGTTAGGTATTTACTGGATGTCAATTCTTTAATATCTTGACCTATTGTTTCACTAAGCTATGTTCTGTGTTTTGGGTTCTTGAAATGGCTTTGTAAGTGATATATATTGTGTCAGTTGAATTCAGTTCCAGTAATAAAATAGAAATTTTACCTCTGCTTGAATGTTGGAAGAATGCAAGGTAAATGCAAGGAGTTAGACCAGAAGGATATGTGATTCTTTCCCTCAATTTATTGGCCATTCATCAGGTTTCTAATTGTTATAAATATAAAAGAAAAAAGAAAAACAGTAGGCATACTTTCATATACTTGCTATTCCTACAAGTTCTTCTAAATATTCTATTGCTGCGAGTGGTGCTCACTAGAAAGCTTTTGACCTACTTCCGTTTAACTGTTTTTATATATAGACAATGTTAACTTGCACGAATTTGGAGTAGACTAATATGTTTATTTGGAAAAGAAACTGGTGTGAGTTAATGTTGCAGTCAATAGAGTCCTTAATTACTCTTTCTGAACGACTGACTAGGATCTCGTCCATTGGTTTTATCATTGCAACATGATCTCACGTTGAAGACTTCTCTTATGATTTGGTATTAATTCTCGTTTTGAAATCTGACTCGAACAGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAGGTTGGTTATGTGATAAAAATCAAGGTATCTCACTGGAGATGATGTCATATACCATGATATTTATGCTGGTTGTTTTGTGTGCCAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAGGTGATAATTCTCATGTTACAACTGTTTTCGTATATTATTTCAAAATAATAAGCTGATATCTTGACATCACACACACACACACACATTTATATTTGTACGTCGCTTCATAAAAAAATAAAAATATATGTATGCATGTCTCTGGCCCCAAATGCTTGTTCAAAATATGTATAGTAGTAGAAAAACAGCAGTTTGACAAGTTTTTCCTTCTGGGTTTCACGCCGTTGGCGCCAAGCATTGCTAAGTAATCACCCAGGAATCTCTTTCGATCAAGATGAAGGTGATAATGTCACAGTAACTAAAATTTATTGATGCTGAGGCTTACTATGTGTTGCATCAAGTTCAGGATATTATTTCCTGTAGTCCCCCTTATCCAACCAACACTAGGGAAAAAACAGAAAAAAGAGGAAAAGAATATATGCTTAACTTATGGTTTATTATGTCAAGTTTGGGTGTTCCTATTTGCTGCTACTATCCTGTTTAAGTCCTTCAGAATGGAATGTGGACTTCATGTTTTATTTGCACTGCAGTTCTTGTTAACCTAGTTGGATTTTCCTTTTGTTATTCGATATTTTTGCCCGGCCAGTGCTATTTATATCTGTAGACTTGGCTATGGTGCTGGGTTAGTTTACTGCAACTCATTTTGATTGCACATTGTGAGGGGCTTCTCATTTGCAGTTTCTTGCTCATCATTTTATTTTTTTTTAATTTCTAATTATTTCTTCTCTCCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTGAAAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTC</genome_strand>
        <mrna_strand>GCAAAGAGGAGATTGAGGAGGTGGGAAAGGAAACGAAACAAAAGAAGAAAAAG-A-A-GAAGAAGAAAAAGAAAGAGAAGATCAATAAAAATGCTGTAAATGAAGCTGAAGGAAATGAAGAGTCACCAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGATGGAAATGATGATCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAGAAAGCGTGCATTCCTGCAGGTGCTCACCAAGGAAAG.....................................................................................GATGTTGTGGGTGCTGCAGAGACAGGTTCAGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTCCCAGAAAATGGAGAATTGGATGAAAAAGTTGCCTCGGCAGGTCTCCTCCGCGCTCTAATTATTACTCCCACAAGAGAGCTTGCCCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGATCATCTGAAGGAAGCAGCAAGACATTCCAATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTG-AAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442132" ref_strand="+" ref_description="SGN-E442132 [cSTA-32-E21]">
      <seq>gcaaagaggagattgaggaggtgggaaaggaaacgaaacaaaagaagaaaaagaagaagaagaaaaagaaagagaagatcaataaaaatgctgtaaatgaagctgaaggaaatgaagagtcaccagctgtcactgatggaaatgatgatcaagaacaagattcagtagatgaaactgaatattatgcatggaatgaactgagacttcatccactgctcatgaaatcgatatacgcgctcaagttcaaagaacctacaccaatacagaaagcgtgcattcctgcaggtgctcaccaaggaaaggatgttgtgggtgctgcagagacaggttcagggaaaacactggcatttggtctgcccattcttcaacgtctgcttgaggagcgagaaaaggccgaaaggcagctcccagaaaatggagaattggatgaaaaagttgcctcggcaggtctcctccgcgctctaattattactcccacaagagagcttgcccttcaggtcactgatcatctgaaggaagcaacaagacattccaattttagggttgtccctattgttggtggaatgtcaagtgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="19070" stop="21894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19370" g_stop="19501" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20332" g_stop="20504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="302" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20590" g_stop="20784" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="497" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20785" i_stop="21513" i_length="729">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21514" g_stop="21594" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="578" r_length="81" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E442132" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19370" e_stop="19501"/>
          <exon e_start="20332" e_stop="20504"/>
          <exon e_start="20590" e_stop="20784"/>
          <exon e_start="21514" e_stop="21594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTGGTTAGTGTTGCATTAAAATCTGATATTTTCCTTTTTGTAAAGGCTTCTCAATTTTTAAGTTTAGTATAATGCTAACTTGTTCTTTCATTGAGTCTCTGGATGTTTTCATAATTCCTGAAATTCTGGTATCAGTCGGTCAATTTCAAGTGAATGTCTATGGGTAACAACCTTTAATCACATTGGCGAATCTTTCAACAATTTTATTGTTAGTTAGGTATTTACTGGATGTCAATTCTTTAATATCTTGACCTATTGTTTCACTAAGCTATGTTCTGTGTTTTGGGTTCTTGAAATGGCTTTGTAAGTGATATATATTGTGTCAGTTGAATTCAGTTCCAGTAATAAAATAGAAATTTTACCTCTGCTTGAATGTTGGAAGAATGCAAGGTAAATGCAAGGAGTTAGACCAGAAGGATATGTGATTCTTTCCCTCAATTTATTGGCCATTCATCAGGTTTCTAATTGTTATAAATATAAAAGAAAAAAGAAAAACAGTAGGCATACTTTCATATACTTGCTATTCCTACAAGTTCTTCTAAATATTCTATTGCTGCGAGTGGTGCTCACTAGAAAGCTTTTGACCTACTTCCGTTTAACTGTTTTTATATATAGACAATGTTAACTTGCACGAATTTGGAGTAGACTAATATGTTTATTTGGAAAAGAAACTGGTGTGAGTTAATGTTGCAGTCAATAGAGTCCTTAATTACTCTTTCTGAACGACTGACTAGGATCTCGTCCATTGGTTTTATCATTGCAACATGATCTCACGTTGAAGACTTCTCTTATGATTTGGTATTAATTCTCGTTTTGAAATCTGACTCGAACAGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAGGTTGGTTATGTGATAAAAATCAAGGTATCTCACTGGAGATGATGTCATATACCATGATATTTATGCTGGTTGTTTTGTGTGCCAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAGGTGATAATTCTCATGTTACAACTGTTTTCGTATATTATTTCAAAATAATAAGCTGATATCTTGACATCACACACACACACACACATTTATATTTGTACGTCGCTTCATAAAAAAATAAAAATATATGTATGCATGTCTCTGGCCCCAAATGCTTGTTCAAAATATGTATAGTAGTAGAAAAACAGCAGTTTGACAAGTTTTTCCTTCTGGGTTTCACGCCGTTGGCGCCAAGCATTGCTAAGTAATCACCCAGGAATCTCTTTCGATCAAGATGAAGGTGATAATGTCACAGTAACTAAAATTTATTGATGCTGAGGCTTACTATGTGTTGCATCAAGTTCAGGATATTATTTCCTGTAGTCCCCCTTATCCAACCAACACTAGGGAAAAAACAGAAAAAAGAGGAAAAGAATATATGCTTAACTTATGGTTTATTATGTCAAGTTTGGGTGTTCCTATTTGCTGCTACTATCCTGTTTAAGTCCTTCAGAATGGAATGTGGACTTCATGTTTTATTTGCACTGCAGTTCTTGTTAACCTAGTTGGATTTTCCTTTTGTTATTCGATATTTTTGCCCGGCCAGTGCTATTTATATCTGTAGACTTGGCTATGGTGCTGGGTTAGTTTACTGCAACTCATTTTGATTGCACATTGTGAGGGGCTTCTCATTTGCAGTTTCTTGCTCATCATTTTATTTTTTTTTAATTTCTAATTATTTCTTCTCTCCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAA</genome_strand>
        <mrna_strand>GCAAAGAGGAGATTGAGGAGGTGGGAAAGGAAACGAAACAAAAGAAGAAAAAG-A-A-GAAGAAGAAAAAGAAAGAGAAGATCAATAAAAATGCTGTAAATGAAGCTGAAGGAAATGAAGAGTCACCAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGATGGAAATGATGATCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAGAAAGCGTGCATTCCTGCAGGTGCTCACCAAGGAAAG.....................................................................................GATGTTGTGGGTGCTGCAGAGACAGGTTCAGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTCCCAGAAAATGGAGAATTGGATGAAAAAGTTGCCTCGGCAGGTCTCCTCCGCGCTCTAATTATTACTCCCACAAGAGAGCTTGCCCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGATCATCTGAAGGAAGCAACAAGACATTCCAATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442142" ref_strand="+" ref_description="SGN-E442142 [cSTA-32-G21]">
      <seq>gcaaagaggagattgaggaggtgggaaaggaaacgaaacaaaagaagaaaaagaagaagaagaaaaagaaagagaagatcaataaaaatgctgtaaatgaagctgaaggaaatgaagagtcaccagctgtcactgatggaaatgatgatcaagaacaagattcagtagatgaaactgaatattatgcatggaatgaactgagacttcatccactgctcatgaaatcgatatacgcgctcaagttcaaagaacctacaccaatacagaaagcgtgcattcctgcaggtgctcaccaaggaaaggatgttgtgggtgctgcagagacaggttcagggaaaacactggcatttggtctgcccattcttcaacgtctgcttgaggagcgagaaaaggccgaaaggcagctcccagaaaatggagaattggatgaaaaagttgcctcggcaggtctcctccgcgctctaattattactcccacaagagagcttgcccttcaggtcactgatcatctgaaggaagcagcaagacattccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="19070" stop="21853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19370" g_stop="19501" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20332" g_stop="20504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="302" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20590" g_stop="20784" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="497" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20785" i_stop="21513" i_length="729">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21514" g_stop="21553" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="537" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E442142" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19370" e_stop="19501"/>
          <exon e_start="20332" e_stop="20504"/>
          <exon e_start="20590" e_stop="20784"/>
          <exon e_start="21514" e_stop="21553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTGGTTAGTGTTGCATTAAAATCTGATATTTTCCTTTTTGTAAAGGCTTCTCAATTTTTAAGTTTAGTATAATGCTAACTTGTTCTTTCATTGAGTCTCTGGATGTTTTCATAATTCCTGAAATTCTGGTATCAGTCGGTCAATTTCAAGTGAATGTCTATGGGTAACAACCTTTAATCACATTGGCGAATCTTTCAACAATTTTATTGTTAGTTAGGTATTTACTGGATGTCAATTCTTTAATATCTTGACCTATTGTTTCACTAAGCTATGTTCTGTGTTTTGGGTTCTTGAAATGGCTTTGTAAGTGATATATATTGTGTCAGTTGAATTCAGTTCCAGTAATAAAATAGAAATTTTACCTCTGCTTGAATGTTGGAAGAATGCAAGGTAAATGCAAGGAGTTAGACCAGAAGGATATGTGATTCTTTCCCTCAATTTATTGGCCATTCATCAGGTTTCTAATTGTTATAAATATAAAAGAAAAAAGAAAAACAGTAGGCATACTTTCATATACTTGCTATTCCTACAAGTTCTTCTAAATATTCTATTGCTGCGAGTGGTGCTCACTAGAAAGCTTTTGACCTACTTCCGTTTAACTGTTTTTATATATAGACAATGTTAACTTGCACGAATTTGGAGTAGACTAATATGTTTATTTGGAAAAGAAACTGGTGTGAGTTAATGTTGCAGTCAATAGAGTCCTTAATTACTCTTTCTGAACGACTGACTAGGATCTCGTCCATTGGTTTTATCATTGCAACATGATCTCACGTTGAAGACTTCTCTTATGATTTGGTATTAATTCTCGTTTTGAAATCTGACTCGAACAGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAGGTTGGTTATGTGATAAAAATCAAGGTATCTCACTGGAGATGATGTCATATACCATGATATTTATGCTGGTTGTTTTGTGTGCCAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAGGTGATAATTCTCATGTTACAACTGTTTTCGTATATTATTTCAAAATAATAAGCTGATATCTTGACATCACACACACACACACACATTTATATTTGTACGTCGCTTCATAAAAAAATAAAAATATATGTATGCATGTCTCTGGCCCCAAATGCTTGTTCAAAATATGTATAGTAGTAGAAAAACAGCAGTTTGACAAGTTTTTCCTTCTGGGTTTCACGCCGTTGGCGCCAAGCATTGCTAAGTAATCACCCAGGAATCTCTTTCGATCAAGATGAAGGTGATAATGTCACAGTAACTAAAATTTATTGATGCTGAGGCTTACTATGTGTTGCATCAAGTTCAGGATATTATTTCCTGTAGTCCCCCTTATCCAACCAACACTAGGGAAAAAACAGAAAAAAGAGGAAAAGAATATATGCTTAACTTATGGTTTATTATGTCAAGTTTGGGTGTTCCTATTTGCTGCTACTATCCTGTTTAAGTCCTTCAGAATGGAATGTGGACTTCATGTTTTATTTGCACTGCAGTTCTTGTTAACCTAGTTGGATTTTCCTTTTGTTATTCGATATTTTTGCCCGGCCAGTGCTATTTATATCTGTAGACTTGGCTATGGTGCTGGGTTAGTTTACTGCAACTCATTTTGATTGCACATTGTGAGGGGCTTCTCATTTGCAGTTTCTTGCTCATCATTTTATTTTTTTTTAATTTCTAATTATTTCTTCTCTCCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATT</genome_strand>
        <mrna_strand>GCAAAGAGGAGATTGAGGAGGTGGGAAAGGAAACGAAACAAAAGAAGAAAAAG-A-A-GAAGAAGAAAAAGAAAGAGAAGATCAATAAAAATGCTGTAAATGAAGCTGAAGGAAATGAAGAGTCACCAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGATGGAAATGATGATCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAGAAAGCGTGCATTCCTGCAGGTGCTCACCAAGGAAAG.....................................................................................GATGTTGTGGGTGCTGCAGAGACAGGTTCAGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTCCCAGAAAATGGAGAATTGGATGAAAAAGTTGCCTCGGCAGGTCTCCTCCGCGCTCTAATTATTACTCCCACAAGAGAGCTTGCCCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGATCATCTGAAGGAAGCAGCAAGACATTCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603854" ref_strand="+" ref_description="SGN-E603854 [67043]">
      <seq>ggaaaaggaaacgaaacaaaagaagaaaaagaagaagaagaaaaagaaagataagatcaataaagatgctgtaaatgaagctgaaggaaatgaagagtcgccagctgtcactgatggaaatgatgatcaagaacaagattcagtagatgaaactgaatattatgcatggaatgaactgagacttcatccactgctcatgaaatcgatatacgcgctcaagttcaaagaacctacaccaatacagaaagtgtgcattcctgcaggtgctcaccaaggaaaggatgttgtgggtgctgcagagacaggttcagggaaaacactggcatttggtctccccattcttcaacgtctgcttgaggagcgagaaaaggccgaaaggcagcttccagaaaatggagaattggatgaaaaagttgcctcggcaggtctcctccgcgctctaattattactcccacaagagagcttgcccttcaggtcgctgatcatctgaaggaagcagcaagacattccaattttagggttgtccctatcgttggtggaatgtcaagtgaaaaacaagaaagacttttgaaaacaaggcctgaaattgttgtcggaactccggggaggctttgggagcttatgtctggtggtgatactcatctcgtggagttgcactcactgtcatttcctgtgctggatgaggccgatcggatgatagaaacatggccatttccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="19092" stop="22606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19392" g_stop="19501" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20332" g_stop="20504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="280" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85">
            <donor d_prob="0.941" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20590" g_stop="20784" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="475" r_length="195" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20785" i_stop="21513" i_length="729">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21514" g_stop="21690" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="652" r_length="177" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21691" i_stop="22240" i_length="550">
            <donor d_prob="0.576" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22241" g_stop="22306" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="719" r_length="67" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E603854" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19392" e_stop="19501"/>
          <exon e_start="20332" e_stop="20504"/>
          <exon e_start="20590" e_stop="20784"/>
          <exon e_start="21514" e_stop="21690"/>
          <exon e_start="22241" e_stop="22306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTGGTTAGTGTTGCATTAAAATCTGATATTTTCCTTTTTGTAAAGGCTTCTCAATTTTTAAGTTTAGTATAATGCTAACTTGTTCTTTCATTGAGTCTCTGGATGTTTTCATAATTCCTGAAATTCTGGTATCAGTCGGTCAATTTCAAGTGAATGTCTATGGGTAACAACCTTTAATCACATTGGCGAATCTTTCAACAATTTTATTGTTAGTTAGGTATTTACTGGATGTCAATTCTTTAATATCTTGACCTATTGTTTCACTAAGCTATGTTCTGTGTTTTGGGTTCTTGAAATGGCTTTGTAAGTGATATATATTGTGTCAGTTGAATTCAGTTCCAGTAATAAAATAGAAATTTTACCTCTGCTTGAATGTTGGAAGAATGCAAGGTAAATGCAAGGAGTTAGACCAGAAGGATATGTGATTCTTTCCCTCAATTTATTGGCCATTCATCAGGTTTCTAATTGTTATAAATATAAAAGAAAAAAGAAAAACAGTAGGCATACTTTCATATACTTGCTATTCCTACAAGTTCTTCTAAATATTCTATTGCTGCGAGTGGTGCTCACTAGAAAGCTTTTGACCTACTTCCGTTTAACTGTTTTTATATATAGACAATGTTAACTTGCACGAATTTGGAGTAGACTAATATGTTTATTTGGAAAAGAAACTGGTGTGAGTTAATGTTGCAGTCAATAGAGTCCTTAATTACTCTTTCTGAACGACTGACTAGGATCTCGTCCATTGGTTTTATCATTGCAACATGATCTCACGTTGAAGACTTCTCTTATGATTTGGTATTAATTCTCGTTTTGAAATCTGACTCGAACAGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAGGTTGGTTATGTGATAAAAATCAAGGTATCTCACTGGAGATGATGTCATATACCATGATATTTATGCTGGTTGTTTTGTGTGCCAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAGGTGATAATTCTCATGTTACAACTGTTTTCGTATATTATTTCAAAATAATAAGCTGATATCTTGACATCACACACACACACACACATTTATATTTGTACGTCGCTTCATAAAAAAATAAAAATATATGTATGCATGTCTCTGGCCCCAAATGCTTGTTCAAAATATGTATAGTAGTAGAAAAACAGCAGTTTGACAAGTTTTTCCTTCTGGGTTTCACGCCGTTGGCGCCAAGCATTGCTAAGTAATCACCCAGGAATCTCTTTCGATCAAGATGAAGGTGATAATGTCACAGTAACTAAAATTTATTGATGCTGAGGCTTACTATGTGTTGCATCAAGTTCAGGATATTATTTCCTGTAGTCCCCCTTATCCAACCAACACTAGGGAAAAAACAGAAAAAAGAGGAAAAGAATATATGCTTAACTTATGGTTTATTATGTCAAGTTTGGGTGTTCCTATTTGCTGCTACTATCCTGTTTAAGTCCTTCAGAATGGAATGTGGACTTCATGTTTTATTTGCACTGCAGTTCTTGTTAACCTAGTTGGATTTTCCTTTTGTTATTCGATATTTTTGCCCGGCCAGTGCTATTTATATCTGTAGACTTGGCTATGGTGCTGGGTTAGTTTACTGCAACTCATTTTGATTGCACATTGTGAGGGGCTTCTCATTTGCAGTTTCTTGCTCATCATTTTATTTTTTTTTAATTTCTAATTATTTCTTCTCTCCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTGAAAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTCTGGTGGTGAAACTCATCTCGTGGAGGTTAGTGGCAATTTATGACACGTGATAGGATTGTTTCACAAGGTGACTCTTCATATGTCTCCCTTCTTCCAGCCTAAAAGAAAAAGGAGGGAGAAAGGAAAAAAGACAACGATCTTTTGGCTAAGCTGGCAAAAGATAGAGAGAGTTGATTCTGCCTCTTAATCTATGAAATAGATTTTTGTATGAACTGTTCTTTTCATGATATAAAATTATTTATGTTAGTGTACCCCTCAAAATCCTCTGTTTCAACTGGTTGAAGGTTTACTCTAACGTAGAATGCGAGTCCTAGTAAGATTGTTCACTGGGGGTGTCTGTTACCTGGTTTTTGCTTAATAATTGCAACTCAATTGTGAATAACTTCAAACTACGGATTGTGATGCTTAAGACTAGCTGTCCATCAATTATTGGTTGTCGCTTCTCATGACACCTGATAATCTGAATGGTCCTTTTCAGTTATTCCACATTTGTTATAGTAGGTTGAAACATGCATTCCCATGTTTCTATCCGTTCTATAGAGTGGATGATATTAGTTTCTTTTTTGCTTCTGCAGTTGCACTCACTGTCATTTTTTGTGCTGGATGAGGCCGATCGGATGATAGAAA-ATGGCCATTTCCAC</genome_strand>
        <mrna_strand>GGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAG---AAGAAGAAAAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGTCGCCAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGATGGAAATGATGATCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAGAAAGTGTGCATTCCTGCAGGTGCTCACCAAGGAAAG.....................................................................................GATGTTGTGGGTGCTGCAGAGACAGGTTCAGGGAAAACACTGGCATTTGGTCTCCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGAAAAAGTTGCCTCGGCAGGTCTCCTCCGCGCTCTAATTATTACTCCCACAAGAGAGCTTGCCCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGATCATCTGAAGGAAGCAGCAAGACATTCCAATTTTAGGGTTGTCCCTATCGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTGAAAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTCTGGTGGTGATACTCATCTCGTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCACTCACTGTCATTTCCTGTGCTGGATGAGGCCGATCGGATGATAGAAACATGGCCATTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213513" ref_strand="+" ref_description="SGN-E213513 [cLEC-71-E5]">
      <seq>aaaaggaaacgaaacaaaagaagaaaaagaagatgaagaagaagaagaaagataagatcaataaagatgctgtaaatgaagctgaaggaaatgaagagccgccagctgtcactgatggaaatgatgaccaagaacaagattcagtagatgaaactgaatattatgcatggaatgaactgagacttcatccactgctcatgaaatcgatatacgcgctcaagttcaaagaacctacaccaatacaacaagcgtgcattcctgcaggttctcaccaaggaaaggatgttgtgggtgctgcagagacaggttctgggaaaacactggcatttggtctgcccattcttcaacgtctgcttgaggagcgagaaaaggccgaaaggcagcttccagaaaatggagaattggatgataaagttgcctccgcaggtctcctccgcgctctaattattactcctacaagagagcttgcccttcaggtcactgatcatctgaaggaagcagcaaaacattcaaattttagggttgtccctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="19094" stop="21870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19394" g_stop="19501" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20332" g_stop="20504" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="281" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20590" g_stop="20784" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="476" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20785" i_stop="21513" i_length="729">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21514" g_stop="21570" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="533" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E213513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19394" e_stop="19501"/>
          <exon e_start="20332" e_stop="20504"/>
          <exon e_start="20590" e_stop="20784"/>
          <exon e_start="21514" e_stop="21570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTGGTTAGTGTTGCATTAAAATCTGATATTTTCCTTTTTGTAAAGGCTTCTCAATTTTTAAGTTTAGTATAATGCTAACTTGTTCTTTCATTGAGTCTCTGGATGTTTTCATAATTCCTGAAATTCTGGTATCAGTCGGTCAATTTCAAGTGAATGTCTATGGGTAACAACCTTTAATCACATTGGCGAATCTTTCAACAATTTTATTGTTAGTTAGGTATTTACTGGATGTCAATTCTTTAATATCTTGACCTATTGTTTCACTAAGCTATGTTCTGTGTTTTGGGTTCTTGAAATGGCTTTGTAAGTGATATATATTGTGTCAGTTGAATTCAGTTCCAGTAATAAAATAGAAATTTTACCTCTGCTTGAATGTTGGAAGAATGCAAGGTAAATGCAAGGAGTTAGACCAGAAGGATATGTGATTCTTTCCCTCAATTTATTGGCCATTCATCAGGTTTCTAATTGTTATAAATATAAAAGAAAAAAGAAAAACAGTAGGCATACTTTCATATACTTGCTATTCCTACAAGTTCTTCTAAATATTCTATTGCTGCGAGTGGTGCTCACTAGAAAGCTTTTGACCTACTTCCGTTTAACTGTTTTTATATATAGACAATGTTAACTTGCACGAATTTGGAGTAGACTAATATGTTTATTTGGAAAAGAAACTGGTGTGAGTTAATGTTGCAGTCAATAGAGTCCTTAATTACTCTTTCTGAACGACTGACTAGGATCTCGTCCATTGGTTTTATCATTGCAACATGATCTCACGTTGAAGACTTCTCTTATGATTTGGTATTAATTCTCGTTTTGAAATCTGACTCGAACAGTCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAGGTTGGTTATGTGATAAAAATCAAGGTATCTCACTGGAGATGATGTCATATACCATGATATTTATGCTGGTTGTTTTGTGTGCCAGGATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAGGTGATAATTCTCATGTTACAACTGTTTTCGTATATTATTTCAAAATAATAAGCTGATATCTTGACATCACACACACACACACACATTTATATTTGTACGTCGCTTCATAAAAAAATAAAAATATATGTATGCATGTCTCTGGCCCCAAATGCTTGTTCAAAATATGTATAGTAGTAGAAAAACAGCAGTTTGACAAGTTTTTCCTTCTGGGTTTCACGCCGTTGGCGCCAAGCATTGCTAAGTAATCACCCAGGAATCTCTTTCGATCAAGATGAAGGTGATAATGTCACAGTAACTAAAATTTATTGATGCTGAGGCTTACTATGTGTTGCATCAAGTTCAGGATATTATTTCCTGTAGTCCCCCTTATCCAACCAACACTAGGGAAAAAACAGAAAAAAGAGGAAAAGAATATATGCTTAACTTATGGTTTATTATGTCAAGTTTGGGTGTTCCTATTTGCTGCTACTATCCTGTTTAAGTCCTTCAGAATGGAATGTGGACTTCATGTTTTATTTGCACTGCAGTTCTTGTTAACCTAGTTGGATTTTCCTTTTGTTATTCGATATTTTTGCCCGGCCAGTGCTATTTATATCTGTAGACTTGGCTATGGTGCTGGGTTAGTTTACTGCAACTCATTTTGATTGCACATTGTGAGGGGCTTCTCATTTGCAGTTTCTTGCTCATCATTTTATTTTTTTTTAATTTCTAATTATTTCTTCTCTCCAGGTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATTTTAGGGTTGTCCCTATT</genome_strand>
        <mrna_strand>AAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAG.....................................................................................GATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATTTTAGGGTTGTCCCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412421" ref_strand="+" ref_description="SGN-E412421 [STM-16-C4]">
      <seq>cagaggtacaaaattgtgaaacagtttccagtgtccaaagaaagaaaaggcaaacatttgtgttttctgcaaccattgctttgtctgccgatttcaggaagaagctaaagcgtggatcacaaaaatcaaaagcaaacgatgagttgaattcaatagaaactctgtctgagagagcaggaatgagggcagatgcggcaatcattgatctgactaatgcatcaattctagccaacaagctcgaggagtcgtttatagactgcagggaagaagataaagatgggtatttgtattacattttgagtgttcatggacaaggtcggacaattgttttctgtacgtccattgcagctttacgccatatttcctccctcttgcgcatccttggcgtcaatgtctggacacttcatgcccagatgcagcagagagctcgacttaaggcaattgaccggtttcggggacatgagcatggtatactcattgctacagatgttgcagccagaggtttggatattcctggtgttcgaactgtcattcactatcagctacctcattcagctgaagtaagtttgtaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="22067" stop="23962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22367" g_stop="22623" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22624" i_stop="22935" i_length="312">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22936" g_stop="23116" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="437" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23117" i_stop="23524" i_length="408">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23525" g_stop="23662" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="575" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E412421" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22367" e_stop="22623"/>
          <exon e_start="22936" e_stop="23116"/>
          <exon e_start="23525" e_stop="23662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCACAAAATTGTGAAACAGTTTCCAGTGTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGAGTAAGTTGGTATTTCTTGTTTTTTCTTTTGAGAATGATTTGTGCCAACTTTATCGCCATTGGCCTAACATCACCTCATCTTTCTATATACATGTTTCCAATATAATTTGTGCTTATGTGCTTGTGAAGTTTAATCTTTGCCTAGAGTTTGCAAATTTTGTATATATTTCGTCTGAGATACCTTTCCTTTAAATTGCTATAGTTTATATTAAACTGAAGCTTCATACATATTTCTGCTGCTGTAAATATGTACTCGTTTTCACCATGCATGCTACCCTGGTGTGAAACTGATCATTCCATTGTTGGGTCGCAGCTGCAGGGATGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTCTGTACGTCCATTGCAGCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAGGTCACTTTTATGATTTCTTTCCCATTTTAGGTTATGCTCCATTTTCTTTACTTTCAAATTCTATAGTAATTCTTTCGCGGAGAAAAGGAGGAGATGTTCAATCTAGTGGCTCTTGATTGGTACACCAATGATCTGTTCTGGAATTATTTAGAGCCTGTTTAGATGAGCTTATAACTTATGGCTATAAGCCAAAAGTCAGTAGTTAGGATTTCTATGTCTACAGTCTTGACATTTTATCCACTTGCTATGAGATTGTTTCATTCTCTAATTGAGAAGACAGAAGATGTCAATTTATTCCATCTTGTCCAATTGTCGCATCAATGAGCTTTTCCTTCTCACAAACATGGAACTACTAAACATGTTCTATATTCTGTTGCCTTCTCTTCTTAGCCATTTTGTTCAATGCAGGCAATTGACCGGTTTCGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATTCCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAAGTAAGTTCGTAATGT</genome_strand>
        <mrna_strand>CAGAGGT-ACAAAATTGTGAAACAGTTTCCAGTGTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGA........................................................................................................................................................................................................................................................................................................................CTGCAGGGAAGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTTTTCTGTACGTCCATTGCAGCTTTACGCCATATTTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAGCAGAGAGCTCGACTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGACCGGTTTCGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATTCCTGGTGTTCGAACTGTCATTCACTATCAGCTACCTCATTCAGCTGAAGTAAGTTTGTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470589" ref_strand="+" ref_description="SGN-E470589 [cSTB-19-B24]">
      <seq>cagaaatcacaaaattgtgaaacagtttccagtgtccaaagaaagaaaaggcaaacatttgtgttttctgcaaccattgctttgtctgccgatttcaggaagaagctaaagcgtggatcacaaaaatcaaaagcaaacgatgagttgaattcaatagaaactctgtctgagagagcaggaatgagggcagatgcggcaatcattgatctgactaatgcatcaattctagccaacaagctcgaggagtcgtttatagactgcagggaagaagataaagatgggtatttgtattacattttgagtgttcatggacaaggtcggacaattgttttctgtacgtccattgcagctttacgccatatttcctccctcttgcgcatccttggcgtcaatgtctggacacttcatgcccagatgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="22067" stop="23400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22367" g_stop="22623" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22624" i_stop="22935" i_length="312">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22936" g_stop="23100" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="422" r_length="165" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E470589" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22367" e_stop="22623"/>
          <exon e_start="22936" e_stop="23100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCACAAAATTGTGAAACAGTTTCCAGTGTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGAGTAAGTTGGTATTTCTTGTTTTTTCTTTTGAGAATGATTTGTGCCAACTTTATCGCCATTGGCCTAACATCACCTCATCTTTCTATATACATGTTTCCAATATAATTTGTGCTTATGTGCTTGTGAAGTTTAATCTTTGCCTAGAGTTTGCAAATTTTGTATATATTTCGTCTGAGATACCTTTCCTTTAAATTGCTATAGTTTATATTAAACTGAAGCTTCATACATATTTCTGCTGCTGTAAATATGTACTCGTTTTCACCATGCATGCTACCCTGGTGTGAAACTGATCATTCCATTGTTGGGTCGCAGCTGCAGGGATGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTCTGTACGTCCATTGCAGCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAACA</genome_strand>
        <mrna_strand>CAGAAATCACAAAATTGTGAAACAGTTTCCAGTGTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGA........................................................................................................................................................................................................................................................................................................................CTGCAGGGAAGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTTTTCTGTACGTCCATTGCAGCTTTACGCCATATTTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307930" ref_strand="+" ref_description="SGN-E307930 [cLEY-20-P18]">
      <seq>ccaaagaaagaaaaggcaatacatttgtgttttctgcaaccattgctttgtctgccgatttcaggaagaagctaaagcgtggatcacaaaaatcaaaagcaaacgatgagttgaattcaatagaaactctgtctgagagagcaggaatgagggcagatgcggcaatcattgatctgactaatgcatcaattctagccaacaagctcgaggagtcgtttatagactgcagggatgaagataaagatgggtatttgtattacattttgagtgttcatggacaaggtcggacaattgtcttctgtacgtccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="22102" stop="23325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22402" g_stop="22623" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22624" i_stop="22935" i_length="312">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22936" g_stop="23025" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="313" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E307930" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22402" e_stop="22623"/>
          <exon e_start="22936" e_stop="23025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGAAAGAAAAGGCAA-ACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGAGTAAGTTGGTATTTCTTGTTTTTTCTTTTGAGAATGATTTGTGCCAACTTTATCGCCATTGGCCTAACATCACCTCATCTTTCTATATACATGTTTCCAATATAATTTGTGCTTATGTGCTTGTGAAGTTTAATCTTTGCCTAGAGTTTGCAAATTTTGTATATATTTCGTCTGAGATACCTTTCCTTTAAATTGCTATAGTTTATATTAAACTGAAGCTTCATACATATTTCTGCTGCTGTAAATATGTACTCGTTTTCACCATGCATGCTACCCTGGTGTGAAACTGATCATTCCATTGTTGGGTCGCAGCTGCAGGGATGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTCTGTACGTCCATTGC</genome_strand>
        <mrna_strand>CCAAAGAAAGAAAAGGCAATACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGA........................................................................................................................................................................................................................................................................................................................CTGCAGGGATGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTCTGTACGTCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701973" ref_strand="+" ref_description="SGN-E701973 [FA17BH01]">
      <seq>gctttacgccatatctcctccctcttgcgcatccttggcgtcaatgtctggacacttcatgcccagatgcaacagagagctcgacttaaggcaattgaccggtttcggggacatgagcatggtatactcattgctacagatgttgcagccagaggtttggatattcctggtgttcgaaccgtcattcactatcagctacctcattcagctgaagtttacgttcatagaagtggaagaactgctagggctcattctgatggatgtagcattgctctaatcacaccaaatgatacctcaaagtttgctgctttatgcaggtcgttttcaaaggataacttccagcggtttcccttagaaatgtcatacatgcctgaagttatgaagcgattatcccttgcacgtcaaatagacaagatttcccgaaaggactctcaggacaaggccaagaaaaattggcttgagcgaagtgctgaattaatggaactagatttggaagataatgatagtgaggaggaaagagtgaacaatcataagcgaaagaaagccacatctgctcaactaactaatctacaagaggaactaaaaagtcttctttcacggccattgcaacccaaaacattctcaaaacgctacttggctggggctggtgtttcacctctccttcagaaccagctggaggaattagctagacagaaaaattcaaataattccggagatgttaaaaggaagaaaatgatcgtcattggtcaggattgtgtcgagcccctccaggcacttangagtgctggtccagagactaagttgaatctgaaggatatggctgaaaaacggagagaatataccgagttnaggagaaagaggagagaaaccaaaaaacgtttgcgcgaaacacgacgaaaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="22727" stop="26746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23027" g_stop="23116" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23117" i_stop="23524" i_length="408">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23525" g_stop="23647" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="213" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23648" i_stop="23724" i_length="77">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23725" g_stop="23841" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="330" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23842" i_stop="24282" i_length="441">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24283" g_stop="24387" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="435" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24388" i_stop="25527" i_length="1140">
            <donor d_prob="0.360" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25528" g_stop="25668" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="576" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25669" i_stop="25824" i_length="156">
            <donor d_prob="0.603" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25825" g_stop="25890" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="642" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25891" i_stop="26096" i_length="206">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26097" g_stop="26249" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="795" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26250" i_stop="26355" i_length="106">
            <donor d_prob="0.878" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26356" g_stop="26437" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="796" r_stop="877" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="26438" i_stop="26541" i_length="104">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="26542" g_stop="26568" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="904" r_length="27" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E701973" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23027" e_stop="23116"/>
          <exon e_start="23525" e_stop="23647"/>
          <exon e_start="23725" e_stop="23841"/>
          <exon e_start="24283" e_stop="24387"/>
          <exon e_start="25528" e_stop="25668"/>
          <exon e_start="25825" e_stop="25890"/>
          <exon e_start="26097" e_stop="26249"/>
          <exon e_start="26356" e_stop="26437"/>
          <exon e_start="26542" e_stop="26568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAGGTCACTTTTATGATTTCTTTCCCATTTTAGGTTATGCTCCATTTTCTTTACTTTCAAATTCTATAGTAATTCTTTCGCGGAGAAAAGGAGGAGATGTTCAATCTAGTGGCTCTTGATTGGTACACCAATGATCTGTTCTGGAATTATTTAGAGCCTGTTTAGATGAGCTTATAACTTATGGCTATAAGCCAAAAGTCAGTAGTTAGGATTTCTATGTCTACAGTCTTGACATTTTATCCACTTGCTATGAGATTGTTTCATTCTCTAATTGAGAAGACAGAAGATGTCAATTTATTCCATCTTGTCCAATTGTCGCATCAATGAGCTTTTCCTTCTCACAAACATGGAACTACTAAACATGTTCTATATTCTGTTGCCTTCTCTTCTTAGCCATTTTGTTCAATGCAGGCAATTGACCGGTTTCGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATTCCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAAGTAAGTTCGTAATGTGCCTTCTTATTGGTAGCTTGTTACCACGTACACAATTTCAATCTATGAAAATTGTTGTGCAGGTTTACGTTCATAGAAGTGGAAGAACTGCTAGGGCTCATTCTGATGGATGTAGCATTGCTCTAATCACACCAAATGATACCTCAAAGTTTGCTGCTTTATGCAGGTCGTTTTCAAAGGTAATCTTCGAATAGCCACTGGAATGAGCAAATACTCTTTTTATAGATACATATCCTCTGTAAATGAGCGCAAGGGAGAAAACCATTCAGTTTGGAGGTTGACTCGATACATATTGATTTTTTAGCTTACGAGTACTTCCTTTTAGATTTTCAACTTTTGTGATTATTTCGTATTATATACAAAATGATTAGATGGAGCAGTGACATTATTTCCCTCTAAGCAGACTGCTTCTGGCTTCTCTTTCCTGATGTTGTAGAGTTTCTTGCTTCTATCTTTCTCGGTTGGTCAATTGTAGCTGTATGCTTGTCTTGGTTGACACTCATTCAAGACATTATTTTTTCTCCCTCTTGTCTTTACATTTAACCCTCTTTTTTATTTTTTGTGAAAGCTCTATTCGAGTAGCAATGTTTTGCACTAATGGATATTGTTGCTATTTCCAGGATAACTTCCAGCGGTTTCCCTTAGAAATGTCATACATGCCTGAAGTTATGAAGCGATTATCCCTTGCACGTCAAATAGACAAGATTTCCCGAAAGGACTCTCAGGTGATCTTCTGGTCCCACGTATCTCTGAGTGTTAAAATGCTTCTTCCTATGCTATGGTCATGAGTCTCTCTGACCAATCTAACTATGATGATTGAAATGCATTTTTCTTGATAATGCCATTTACTTTATACTTCAGAAGCCTCTTTTGTTCTTAAGCAGCTAATGTTCTTCACTATAGTCTGCTGAATCAAAAAACGTAGCTTTTGACAAGTGAAAGATTTCATCTTGTTTTCCATATACTTCTTGTTAGCCTCACTTTATTGAACATTGAATTCCTTCACATTTTTGGACATACCAACTTGGTTACTAGACAATTAGTAATTTCTTTTTTAGGAAGAATGCTGTATACTGTTTTGAATTATCAATGAAGGGATAAAGATGTGTAAATGTTTTCCGTGGATACAAAATAGTGAAGATACGATGATTCTTGTTTTGCTAAGAAGAATCTAACACAATAAGTTGAAAACTTCCACCTTATTGGTTTATCTTTTTTTTTTGGGACAAATTAACATGGTTATGATACAATAAGTGGTTTTCCTTTCAGAAATCTTATTCTATTCTGCTTTAAATTCCATAAAGAGCTTAAAAGAAGGATTTTTGCTAGTGTTTAGTGAGATATTTTTTCTTTCTTTTGGGATTTGTACCGTATATGTTAGGTATAAAAGAACTCTTAATTGATCTTCCTTTAGTAAGAAAGAATCTGCTGGAAGTAGTTGGAAACTTCTCCCTTATTGGGTTCCTTGCAAAAATGTTTACTAACTTATCTGCATTAACCCAAAACAAGGAATAGCTTCGTGGTAACTGGTAAGGAAATTTCGTGTTACCGAGGGAGCAAAGTAGGAAATAGCCACTGATGGGCCCTGCCCTTGGGTTTTGGTTTTCAGAAGGTGTTTGCTTTAAGCAACATCCACCACTACGCTTCGCCAAGCTAGTTGGGGATCGGCTAATACAAATTTGTCCTATTTGATGGGTGGTATTCACAATCTAAAGGAAAATAACCTATTTAGCAAACTGTTTTCTCTGTATCCACTGAGTAACTTGATCTTAAAGTTCCAGAATATTGTTTCCTCCTATTGCCGCCGGTAACTTGTATTCACGTTTATACATTTCGTTCATGGTTAGTTTCCTTTTTTTTTCCAGGACAAGGCCAAGAAAAATTGGCTTGAGCGAAGTGCTGAATTAATGGAACTAGATTTGGAAGATAATGATAGTGAGGAGGAAAGAGTGAACAATCATAAGCGAAAGAAAGCCACATCTGCTCAACTAACTAATCTACAAGAGGTCATTCTGATTATGAAATTTTCTGATATTAATATCTAAAAAGAGGGCAGCCTGGTGCACTAAGCTCCTACAATGTGCAGGGTCCAGAAAGCGTCGGACCACAAAGGGTCTTAAGACTGATGTATACTGAAATATTTAACTTTTTTTAAACTGCAGGAACTAAAAAGTCTTCTTTCACGGCCATTGCAACCCAAAACATTCTCAAAACGCTACTTGGCTGGGGTAAGTTCTCACAGTAATGTGATGTTTCTCGGAATGGCTGCTATTTCTTCCAAACCCATCCTTATATAGCTATTGTTTCTTCCTAAGCTATGTGGTTCAAGTAATAAATAACACAATCGTTTTCTTTGGGGGGGTTCGATGACATTTATTTAGGACGCACGCATCTCTTCGTGTGTTAGTCTAAAATGATTTGATTTTCTTTTCAGGCTGGTGTTTCACCTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAATAATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCCCTCCAGGCACTTAGGAGTGCTGGTCCAGAGGTAATATAGAAGTAGTCGTTTGTATACGTACTATATCTCAACAAAACAGACGTTAATGCTACTTTGTTCCTAAACTCTGCCTACTCTGCCCCTTTTACACTCGCAGACTAAGTTGAATCTGAAGGATATGGCTGAAAAACGGAGAGATATAACCGAGTTAAGGAGAAAGAGGAGAGAAACCAAAAAACGTATTCCCCTCTCCGCTCTCTGATCATTATCATCGACATCTTCTGTTTCCGTTTTATCTTCCAACCTCAATTCTTATCATCTCTGTCCTGTTTCCTTTTCACAGGTTTGCGCGAACAACGACGAAAACAGA</genome_strand>
        <mrna_strand>GCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGACCGGTTTCGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATTCCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAA.............................................................................GTTTACGTTCATAGAAGTGGAAGAACTGCTAGGGCTCATTCTGATGGATGTAGCATTGCTCTAATCACACCAAATGATACCTCAAAGTTTGCTGCTTTATGCAGGTCGTTTTCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAACTTCCAGCGGTTTCCCTTAGAAATGTCATACATGCCTGAAGTTATGAAGCGATTATCCCTTGCACGTCAAATAGACAAGATTTCCCGAAAGGACTCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAGGCCAAGAAAAATTGGCTTGAGCGAAGTGCTGAATTAATGGAACTAGATTTGGAAGATAATGATAGTGAGGAGGAAAGAGTGAACAATCATAAGCGAAAGAAAGCCACATCTGCTCAACTAACTAATCTACAAGAG............................................................................................................................................................GAACTAAAAAGTCTTCTTTCACGGCCATTGCAACCCAAAACATTCTCAAAACGCTACTTGGCTGGG..............................................................................................................................................................................................................GCTGGTGTTTCACCTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAATAATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCCCTCCAGGCACTTANGAGTGCTGGTCCAGAG..........................................................................................................ACTAAGTTGAATCTGAAGGATATGGCTGAAAAACGGAGAGAATATACCGAGTTNAGGAGAAAGAGGAGAGAAACCAAAAAAC........................................................................................................GTTTGCGCGAAACACGACGAAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337932" ref_strand="+" ref_description="SGN-E337932 [cTOE-14-L14]">
      <seq>ctctccttcagaaccagctggaggaattagctagacagaaaaattcaaataattccggagatgttaaaaggaagaaaatgatcgtcattggtcaggattgtgtcgagcccctccaggcacttaggagtgctggtccagagactaagttgaatctgaaggatatggctgaaaaacggagagatataaccgagttaaggagaaagaggagagaaaccaaaaaacgtttgcgcgaacaacgacgaaaacagaagaaaaaacttcaaggaaaagagtgagtctttgtctattctcttagaggattcgaactcgggtatagattctctatgctcatgtaaacgactatgatgaaattcgataactatatatcactcagccaattttgtagtttacagttttaagttaaaaaaaggccaaatcatgttgtaaaaactatatatttatatctgataattggttttgaaatcaaatattcagtgagatgtacaagaagaatttcttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="25810" stop="27121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26110" g_stop="26249" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26250" i_stop="26355" i_length="106">
            <donor d_prob="0.878" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26356" g_stop="26437" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="222" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26438" i_stop="26541" i_length="104">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26542" g_stop="26821" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="502" r_length="280" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="519"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E337932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26110" e_stop="26249"/>
          <exon e_start="26356" e_stop="26437"/>
          <exon e_start="26542" e_stop="26821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAATAATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCCCTCCAGGCACTTAGGAGTGCTGGTCCAGAGGTAATATAGAAGTAGTCGTTTGTATACGTACTATATCTCAACAAAACAGACGTTAATGCTACTTTGTTCCTAAACTCTGCCTACTCTGCCCCTTTTACACTCGCAGACTAAGTTGAATCTGAAGGATATGGCTGAAAAACGGAGAGATATAACCGAGTTAAGGAGAAAGAGGAGAGAAACCAAAAAACGTATTCCCCTCTCCGCTCTCTGATCATTATCATCGACATCTTCTGTTTCCGTTTTATCTTCCAACCTCAATTCTTATCATCTCTGTCCTGTTTCCTTTTCACAGGTTTGCGCGAACAACGACGAAAACAGAAGAAAAAACTTCAAGGAAAAGAGTGAGTCTTTGTCTATTCTCTTAGAGGATTCGAACTCGGGTATAGATTCTCTATGCTCATGTAAACGACTATGATGAAATTCGATAACTATATATCACTCAGCCAATTTTGTAGTTTACAGTTTTAAGTTAAAAAAAGGCCAAATCATGTTGTAAAAACTATATATTTATATCTGATAATTGGTTTTGAAATCAAATATTCAGTGAGATGTACAAGAGGAATTTCTTGAAA</genome_strand>
        <mrna_strand>CTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAATAATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCCCTCCAGGCACTTAGGAGTGCTGGTCCAGAG..........................................................................................................ACTAAGTTGAATCTGAAGGATATGGCTGAAAAACGGAGAGATATAACCGAGTTAAGGAGAAAGAGGAGAGAAACCAAAAAAC........................................................................................................GTTTGCGCGAACAACGACGAAAACAGAAGAAAAAACTTCAAGGAAAAGAGTGAGTCTTTGTCTATTCTCTTAGAGGATTCGAACTCGGGTATAGATTCTCTATGCTCATGTAAACGACTATGATGAAATTCGATAACTATATATCACTCAGCCAATTTTGTAGTTTACAGTTTTAAGTTAAAAAAAGGCCAAATCATGTTGTAAAAACTATATATTTATATCTGATAATTGGTTTTGAAATCAAATATTCAGTGAGATGTACAAGAAGAATTTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731287" ref_strand="+" ref_description="SGN-E731287 [LA26CG06]">
      <seq>ttttaataagactctccccttcatcttcttcgcacccacccacccctctaccccacccccaccccaccaatggcttgttccgtcgatactctcgctccgttcctcggtcctaacaccaccaacgccgtcgccgccgcttcatacatctgcaaccaattttcaggtgtatcggacagattcatcgataccggttatgcaatcgattctacatatctcctcttctctgcttatctcgttttctccatgcagcttggtttcgctatgctttgcgcgggctctgtccgcgcaaaaaatacaatgaacattatgctcacgaacgtcctcgatgccgccgccggtggacttttttactatctattcggattcgcttttgcttggggtggtccgtctaatggattcatcggccgacattttttcgggcttaaagagatcccgtcaaattcattcgattacagtaatttcctctatcaatgggctttcgccatcgccgccgccggtatcaccagcggttcaatcgccgaacgaacccaatttgttgcctatttgatttattcctcttttctaacgggtttcgtttacccggttgtttctcattggttttggaccccagatgggtgggctagcccgactaattcaaatctattattcggatccggtgtaatcgatttcgccgggtcgggtgtagttcatatggtaggtggaatcgccgggttttacggagctatgattgaangtccacgaatcgggcggtacgatcatacgggtcgatccgttgcgcttcgaggacatagcgcgtcactcgtggttctaggcacctttttattatgggtcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="30511" stop="31943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30811" g_stop="31643" g_length="833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="833" r_length="833" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E731287" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30811" e_stop="31643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATAAGACTCTCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGG</genome_strand>
        <mrna_strand>TTTTAATAAGACTCTCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCATCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTATGATTGAANGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGAGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGGTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330064" ref_strand="+" ref_description="SGN-E330064 [cTOD-5-O17]">
      <seq>actctccccttcatcttcttcgcacccacccacccctctaccccaccctcaccccaccaatggcttgatccgtcgatactctcgctccgttcctcggacctaacaccaccaacgccgtcgccgccgcttcatacatgtgcaaccaattttcaggtgtatctgacagattcgccgataccggctatgcaatcgattctacatatatcctcttctctgcttatgtcgatgtctccatgcagcttggtttcgctatgctttgcgcgggctctgtccgcgcaaaaaatacaatgaacattatgctcacgaacgttctcgatgccgccgccggtggacttttatactatctattcagattcgcttgtgcttgcggtggtccgtctaatggattcatcagccgacattttctccggcttaaagagatcccgtccaattcattcggttacaggaattttctctatcaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="30521" stop="31586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30821" g_stop="31286" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E330064" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30821" e_stop="31286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGC</genome_strand>
        <mrna_strand>ACTCTCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCTCACCCCACCAATGGCTTGATCCGTCGATACTCTCGCTCCGTTCCTCGGACCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATGTGCAACCAATTTTCAGGTGTATCTGACAGATTCGCCGATACCGGCTATGCAATCGATTCTACATATATCCTCTTCTCTGCTTATGTCGATGTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTTCTCGATGCCGCCGCCGGTGGACTTTTATACTATCTATTCAGATTCGCTTGTGCTTGCGGTGGTCCGTCTAATGGATTCATCAGCCGACATTTTCTCCGGCTTAAAGAGATCCCGTCCAATTCATTCGGTTACAGGAATTTTCTCTATCAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744969" ref_strand="+" ref_description="SGN-E744969 [GI|1552336]">
      <seq>tccccttcatcttcttcgcacccacccacccctctaccccacccccaccccaccaatggcttgttccgtcgatactctcgctccgttcctcggtcctaacaccaccaacgccgtcgccgccgcttcatacatctgcaaccaattttcaggtgtatcggacagattcgtcgataccggttatgcaatcgattctacatatctcctcttctctgcttatctcgttttctccatgcagcttggtttcgctatgcttttggcgggctctgtgcgaaatacaatgaatattatgctcacgaacgtcctcgatgccgccgccggtggacttttttactatctattcggattcgcttttgctttgggtggtccgtctaatggattcatcggccgacattttttcgggcttaaagagatcccgtcaaattcattcgattacatgaatttcctctatcaatgggctttcgccatcgccgccgccggtatcaccagcggttcaatcgccgaacgaacccaatttgttgcctatttgatttattcctcttttctaacgggtttcgtttacccggttgtttctcattggttttggaccccagatgggtgggctagcccgactaattcaaatctattattcggatccggtgtaatcgatttcgccgggtcgggtgtagttcatatggtaggtggaatcgccgggttttacggagctttgattgaaggtccacgaatcgggcggtacgatcatacgggtcgatcggttgcgcttcgtggacatagcgcgtcactcgtggttctaggcacctttttattatggttcggatggtacggatttaaccccggttcatttaataaaatcctagttacttacggtgcatccggagggtattatggtcaatggagcgctgtaggacgtaccgcggttacaactaccctagccggttgcaccgcagccctaacgactcttttcggtaaacgtatcctttcgggtcattggaacgtaaccgatgtatgtaacggtttactaggcggatttgcagcgatcacggctgggtgctcggtcgtcgagccgtgggccgcgattatatgtgggttcgtagcggctttagttttaattggttttaacatgttagcggaaaaatttaaatacgacgatccacttgaagcagcacaattacatgggggttgtggtgcatgggggataatttttaccgggttattcgctaaaggggagtttgtggatcaagtatacccgggtaaaccgggtcgacctcacgggttatttatgggtggtggagggaaactactcggggcgcatataatccagatactcgtaataatcgggtgggtcagcgcgacaatgggtccgcttttttatatacttcataaattcaagttgcttcggatatcgtccgaagacgaaatggcgggtatggatctgacccgacatggtgggtttgcttattatcatgaagaggatccgaaattaggaatgcaaatgagaagaattgaaccaacaacctcaacttagaaaaaaaaataaaaaaaaaaattatctttttatttatgtatctttgaattgtctagtttatatttttataaaattaatattagggtgtttgtgaaaagaaaaaaaaaatagtggatttttttaatggtaaaaatgagtggttgtgtatgaagataatgtgaacatgtcctcttttattattttctactagttatcctatatttgactattaatatccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="30525" stop="32870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30825" g_stop="32569" g_length="1745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1740" r_length="1740" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1741" polyA_stop="1751"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E744969" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1745</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30825" e_stop="32569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAATTGGTTTTAACATGTTAGCGGAAAAATTTAAATACGACGATCCACTTGAAGCAGCACAATTACATGGGGGTTGTGGTGCATGGGGGATAATTTTTACCGGGTTATTCGCTAAAGGGGAGTTTGTGGATCAAGTATACCCGGGTAAACCGGGTCGACCTCACGGGTTATTTATGGGTGGTGGAGGGAAACTACTCGGGGCGCATATAATCCAGATACTCGTTATAATCGGGTGGGTCAGCGCGACAATGGGTCCGCTTTTTTATATACTTCATAAATTCAAGTTGCTTCGGATATCGTCCGAAGACGAAATGGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATTATCATGAAGAGGATCCGAAATTAGGAATGCAAATGAGAAGAATTGAACCAACAACCTCAACTTAGAAAAAAAAATAAAAAAAAAAATTATCTTTTTATTTATGTATCTTTGAATTGTCTAGTTTATATTTTTATAAAATTAATATTAGGGTGTTTGTGAAAAGAAAAAAAAAATAGTGGATTTTTTTAATGGTAAAAATGAGTGGTTGTGTATGAAGATAATGTGAACATGTCCTCTTTTATTATTTTCTACTAGTTAT-CTATATTTGACTATTAATATCCA</genome_strand>
        <mrna_strand>TCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTTGGCGGGCTCTGT--GCG----AAATACAATGAATATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTTGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACATGAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCGGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAATTGGTTTTAACATGTTAGCGGAAAAATTTAAATACGACGATCCACTTGAAGCAGCACAATTACATGGGGGTTGTGGTGCATGGGGGATAATTTTTACCGGGTTATTCGCTAAAGGGGAGTTTGTGGATCAAGTATACCCGGGTAAACCGGGTCGACCTCACGGGTTATTTATGGGTGGTGGAGGGAAACTACTCGGGGCGCATATAATCCAGATACTCGTAATAATCGGGTGGGTCAGCGCGACAATGGGTCCGCTTTTTTATATACTTCATAAATTCAAGTTGCTTCGGATATCGTCCGAAGACGAAATGGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATTATCATGAAGAGGATCCGAAATTAGGAATGCAAATGAGAAGAATTGAACCAACAACCTCAACTTAGAAAAAAAAATAAAAAAAAAAATTATCTTTTTATTTATGTATCTTTGAATTGTCTAGTTTATATTTTTATAAAATTAATATTAGGGTGTTTGTGAAAAGAAAAAAAAAATAGTGGATTTTTTTAATGGTAAAAATGAGTGGTTGTGTATGAAGATAATGTGAACATGTCCTCTTTTATTATTTTCTACTAGTTATCCTATATTTGACTATTAATATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571352" ref_strand="+" ref_description="SGN-E571352 [12799]">
      <seq>cccccaccccaccccagcagcccaatggcttgttccgtcgatacactcgctccgttcctcggtcccaacaccaccaacgccgtcgccgccgcctcatacatctgcaaccaattttccggtgtatcggacagattcgtcgataccggttatgcaatcgataccacatatctcctcttctcagcttatctcgttttctctatgcagctcggtttcgctatgctttgcgcgggctctgtccgtgcaaagaatacaatgaacatcatgcttacaaatgtcctcgatgctgccgccggtggacttttctattacctattcggattcgctttcgcttggggcggtccgtctaatggattcatcggccgacatttcttcgggcttaaagagatcccgtcaaattcattcgattacagtaatttcctctatcaatgggctttcgccatcgccgccgccggtatcaccagcggttcaatcgccgaacgcacccaatttgtggcgtattcgatttattcctcttttctaacgggtttcgtttacccggttgtatctcattggtttcggtccccagatgggtgggctagcccgggtaattcaaatcttttattcggatccggtgttatcgatttcgccgggtcgcgtgtagttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="30555" stop="31802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30855" g_stop="31502" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E571352" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30855" e_stop="31502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATAT</genome_strand>
        <mrna_strand>CCCCCACCCCA-CCCCAGCAGCCCAATGGCTTGTTCCGTCGATACACTCGCTCCGTTCCTCGGTCCCAACACCACCAACGCCGTCGCCGCCGCCTCATACATCTGCAACCAATTTTCCGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATACCACATATCTCCTCTTCTCAGCTTATCTCGTTTTCTCTATGCAGCTCGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGTGCAAAGAATACAATGAACATCATGCTTACAAATGTCCTCGATGCTGCCGCCGGTGGACTTTTCTATTACCTATTCGGATTCGCTTTCGCTTGGGGCGGTCCGTCTAATGGATTCATCGGCCGACATTTCTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGCACCCAATTTGTGGCGTATTCGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTATCTCATTGGTTTCGGTCCCCAGATGGGTGGGCTAGCCCGGGTAATTCAAATCTTTTATTCGGATCCGGTGTTATCGATTTCGCCGGGTCGCGTGTAGTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542684" ref_strand="+" ref_description="SGN-E542684 [TUS-64-B19]">
      <seq>tctaccccacccccaccccaccaatggcttgttccgtcgatactctcgctccgttcctcggtcctaacaccaccaacgccgtcgccgccgcttcatacatctgcaaccaattttcaggtgtatcggacagattcgtcgataccggttatgcaatcgattctacatatctcctcttctctgcttatctcgttttctccatgcagcttggtttcgctatgctttgcgcgggctctgtccgcgcaaaaaatacaatgaacattatgctcacgaacgtcctcgatgccgccgccggtggacttttttactatctattcggattcgcttttgcttggggtggtccgtctaatggattcatcggccgacattttttcgggcttaaagagatcccgtcaaattcattcgattacagtaatttcctctatcaatgggctttcgccatcgccgccgccggtatcaccagcggttcaatcgccgaacgaacccaatttgttgcctatttgatttattcctcttttctaacgggtttcgtttacccggttgtttctcattggttttggaccccagatgggtgggctagcccgactaattcaaatctattattcggatccggtgtaatcgatttcgccgggtcgggtgtagttcatatggtaggtggaatcgccgggttttacggagctttgattgaaggtccacgaatcgggcggtacgatcatacgggtcgatccgttgcgcttcgtggacatagcgcgtcactcgtggttctaggcacctttttattatggttcggatggtacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="30557" stop="31953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30857" g_stop="31653" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E542684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30857" e_stop="31653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGA</genome_strand>
        <mrna_strand>TCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301497" ref_strand="+" ref_description="SGN-E301497 [cLEW-23-I15]">
      <seq>ctaccccacccccaccccaccaatggcttgttccgtcgatactctcgctccgttcctcggtcctaacaccaccaacgccgtcgccgccgcttcatacatctgcaaccaattttcaagtgtatcggacagattcgtcgataccggttatgcaatcgattctacatatctcctcttctctgcttatctcgttttctccatgcagcttggtttcgctatgctttgcgcgggctctgtccgcgcaaaaaatacaatgaacattatgctcacgaacgtcctcgatgccgccgccggtggacttttttactatctattcggattcgcttttgcttggggtggtccgtctaatggattcatcggccgacattttttcgggcttaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="30558" stop="31539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30858" g_stop="31239" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E301497" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30858" e_stop="31239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAG</genome_strand>
        <mrna_strand>CTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAAGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299968" ref_strand="+" ref_description="SGN-E299968 [cLEW-11-C14]">
      <seq>ttcgtttacccggttgtttctcattggttttggaccccagatgggtgggctagcccgactaattcaaatctattattcggatccggtgtaatcgatttcgccgggtcgggtgtagttcatatggtaggtggaatcgccgggttttacggagctttgattgaaggtccacgaatcgggcggtacgatcatacgggtcgatccgttgcgcttcgtggacatagcgcgtcactcgtggttctaggcacctttttattatggttcggatggtacggatttaaccccggttcatttaataaaatcctagttacttacggtgcatccggagggtattatggtcaatggagcgctgtaggacgtaccgcggttacaactaccctagccggttgcaccgcagccctaacgactcttttcggtaaacgtatcctttcgggtcattggaacgtaaccgatgtatgtaacggtttactaggcggatttgcagcgatcacggctgggtgctcggtcgtcgagccgtgggccgcgattatatgtgggttcgtagcggctttagttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="31081" stop="32237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31381" g_stop="31937" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E299968" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31381" e_stop="31937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAAT</genome_strand>
        <mrna_strand>TTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608201" ref_strand="+" ref_description="SGN-E608201 [24182]">
      <seq>cccagatgggtggctagcccgggtaatcacatctgttattcggatccggtgttatcgatttcgccgggtcgggtgtagttcacatggtaggtggaattgccgggttttatggagctttaattgaaggtccgagaatcgggcggttcgatcatacgggtcgatccgctgcactccgtggacatagcgcgtcactcgtggttctaggcacctttttattatggttcggatggtacgggtttaacccgggttcatttaataaaatcctagttacttacggtgcaaccggagggtattatggtcaatggagcgctgtagccgtaccgcggtaaccactaccctagccggttgcaccgcagccctaacaacccttttcggtaaaaggatcctttcaggtcattggaacgtaaccgatgtatgtaacggtttactaggcggatttgcagcaatcacggctggatgctcggtcgtaagagccatggggccgcgattatactgtgggttcgtggcgggctttagtttgaatcggttgtaacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="31116" stop="32186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31416" g_stop="31951" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E608201" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31416" e_stop="31951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGT-CGAGCCGT-GGGCCGCGATTATA-TGTGGGTTCGTAGC-GGCTTTAGTTTTAATTGGTTTTAACATGT</genome_strand>
        <mrna_strand>CCCAGATGGGT-GGCTAGCCCGGGTAA-TCACATCTGTTATTCGGATCCGGTGTTATCGATTTCGCCGGGTCGGGTGTAGTTCACATGGTAGGTGGAATTGCCGGGTTTTATGGAGCTTTAATTGAAGGTCCGAGAATCGGGCGGTTCGATCATACGGGTCGATCCGCTGCACTCCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGGTTTAACCCGGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCAACCGGAGGGTATTATGGTCAATGGAGCGCTGTA-GCCGTACCGCGGTAACCACTACCCTAGCCGGTTGCACCGCAGCCCTAACAACCCTTTTCGGTAAAAGGATCCTTTCAGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCAATCACGGCTGGATGCTCGGTCGTAAGAGCCATGGGGCCGCGATTATACTGTGGGTTCGTGGCGGGCTTTAGTTTGAATCGGTTGTAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286382" ref_strand="+" ref_description="SGN-E286382 [cLES-11-J23]">
      <seq>actaattcaaatctattattcggatccggtgtaatcgatttcgccgggtcgggtgtagttcatatggtaggtggaatcgccgggttttacggagctttgattgaaggtccacgaatcgggcggtacgatcatacgggtcgatccgttgcgcttcgtggacatagcgcgtcactcgtggttctaggcacctttttattatggttcggatggtacggatttaaccccggttcatttaataaaatcctagttacttacggtgcatccggagggtattatggtcaatggagcgctgcaggacgtaccgcggttacatctaccctagccggttgcaccgcagccctaacgactcttttcggtcaacgtatactttcgggtcattggaacgtaaccgatgtatgtaacggtttactaggcggattggcagcgatcacggctgggtgctcggtcgtcgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="31138" stop="32192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31438" g_stop="31892" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E286382" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31438" e_stop="31892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCC</genome_strand>
        <mrna_strand>ACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGCAGGACGTACCGCGGTTACATCTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTCAACGTATACTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTGGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542683" ref_strand="+" ref_description="SGN-E542683 [TUS-64-B19](-)">
      <seq>cggttttacggagctttgatgaaggtccacgaatcggccggtacgatcatacgggtcgatccgttgcgcttcgtggacatagcgcgtcactcgtggttctaggcactttttattatggttcggatggtacggatttaaccccggttcatttaataaaatcctagttacttacggtgcatccggagggtattatggtcaatggagcgctgtaggacgtaccgcggttacaactaccctagccggttgcaccgcagccctaacgactcttttcggtaaacgtatcctttcgggtcattggaacgtaaccgatgtatgtaacggtttactaggcggatttgcagcgatcacggctgggtgctcggtcgtcgagccgtgggccgcgattatatgtgggttcgtagcggctttagttttaattggttttaacatgttagcggaaaaatttaaatacgacgatccacttgaagcagcacaattacatgggggttgtggtgcatgggggataatttttaccgggttattcgctaaaggggagtttgtggatcaagtatacccgggtaaaccgggtcgacctcacgggttatttatgggtggtggagggaaactactcggggcgcatataatccagatactcgttataatcgggtgggtcagcgcgacaatgggtccgcttttttatatacttcataaattcaagttgcttcggatatcgtccgaagacgaaatggcgggtatggatctgacccgacatggtgggtttgcttattatcatgaagaggatccgaaattaggaatgcaaatgagaagaattgaaccaacaacctcaacttagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="31220" stop="32661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31519" g_stop="32362" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E542683" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31519" e_stop="32362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAATTGGTTTTAACATGTTAGCGGAAAAATTTAAATACGACGATCCACTTGAAGCAGCACAATTACATGGGGGTTGTGGTGCATGGGGGATAATTTTTACCGGGTTATTCGCTAAAGGGGAGTTTGTGGATCAAGTATACCCGGGTAAACCGGGTCGACCTCACGGGTTATTTATGGGTGGTGGAGGGAAACTACTCGGGGCGCATATAATCCAGATACTCGTTATAATCGGGTGGGTCAGCGCGACAATGGGTCCGCTTTTTTATATACTTCATAAATTCAAGTTGCTTCGGATATCGTCCGAAGACGAAATGGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATTATCATGAAGAGGATCCGAAATTAGGAATGCAAATGAGAAGAATTGAACCAACAACCTCAACTTAGAAAAAAAAAT</genome_strand>
        <mrna_strand>CGGTTTTACGGAGCTTTGA-TGAAGGTCCACGAATCGGCCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCA-CTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAATTGGTTTTAACATGTTAGCGGAAAAATTTAAATACGACGATCCACTTGAAGCAGCACAATTACATGGGGGTTGTGGTGCATGGGGGATAATTTTTACCGGGTTATTCGCTAAAGGGGAGTTTGTGGATCAAGTATACCCGGGTAAACCGGGTCGACCTCACGGGTTATTTATGGGTGGTGGAGGGAAACTACTCGGGGCGCATATAATCCAGATACTCGTTATAATCGGGTGGGTCAGCGCGACAATGGGTCCGCTTTTTTATATACTTCATAAATTCAAGTTGCTTCGGATATCGTCCGAAGACGAAATGGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATTATCATGAAGAGGATCCGAAATTAGGAATGCAAATGAGAAGAATTGAACCAACAACCTCAACTTAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611730" ref_strand="+" ref_description="SGN-E611730 [61485]">
      <seq>cttttcggtaaaaggatcctttcaggtcattggaacgtaaccgatgtatgtaacggtttactaggcggatttgcagcaatcacggctggatgctcggtcgtagagccatgggccgcgattatatgtgggttcgtggcggctttagttttaatcggttgtaacatgttagcggagaaatttaaatacgacgatccgcttgaagcagcacaattacatggtggttgtggtgcatgggggataattttcactgcattatttgctaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="31486" stop="32351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31786" g_stop="32051" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E611730" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31786" e_stop="32051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAATTGGTTTTAACATGTTAGCGGAAAAATTTAAATACGACGATCCACTTGAAGCAGCACAATTACATGGGGGTTGTGGTGCATGGGGGATAATTTTTACCGGGTTATTCGCTAAAGG</genome_strand>
        <mrna_strand>CTTTTCGGTAAAAGGATCCTTTCAGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCAATCACGGCTGGATGCTCGGTCGTAGAGCCATGGGCCGCGATTATATGTGGGTTCGTGGCGGCTTTAGTTTTAATCGGTTGTAACATGTTAGCGGAGAAATTTAAATACGACGATCCGCTTGAAGCAGCACAATTACATGGTGGTTGTGGTGCATGGGGGATAATTTTCACTGCATTATTTGCTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698996" ref_strand="+" ref_description="SGN-E698996 [FA08AH12]">
      <seq>atttttttagaacttcttgtttctttcttcatcgtcttcatcaagagagagattttttcgaacactgaatcagccatggcggctctacagtatttggaatcgctacgcaatgatcatccagagctttctgattggtacacgacgcttgcagatctgtaccaacgcaagctctggcaccagctctctctcaagctcgaacagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggaagtgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39629" stop="43842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39929" g_stop="40153" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="672" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="753" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43542" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="754" r_stop="797" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E698996" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39929" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTTAGAACTTCTTGTTTCTTTCTTCATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATAT</genome_strand>
        <mrna_strand>ATTTTTTTAGAACTTCTTGTTTCTTTCTTCATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAAGTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719359" ref_strand="+" ref_description="SGN-E719359 [FC07CE02]">
      <seq>cggccgaattggtttctttcttcaccctcttcatcaagagagagattttttcgaacactgaatcagccatggcggctctacagtatttggaatcgctacgcaatgatcatccagagctttctgattggtacacgacgcttgcagatctgtaccaacgcaagctctggcaccagctctctctcaagctcgaacagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcaaagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39645" stop="43857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39939" g_stop="40153" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="218" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="665" r_length="447" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="746" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43557" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="805" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E719359" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39939" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCTTGTTTCTTTCTTCATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAA</genome_strand>
        <mrna_strand>AA--T-TGGTTTCTTTCTTCACCCTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAAAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699249" ref_strand="+" ref_description="SGN-E699249 [FA09BB01]">
      <seq>cgcgtttctttcttcatcgtcttcatcaagagagagattttttccaacactgaatcagccatggcggctctacagtatttggaatcgctacgcaatgatcatccagagctttctgattggtacacgacgcttgcagatctgtaccaacgcaagctctggcaccagctctctctcaagctcgaacagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtcccttgcctgctttactgggagacaacgtatacaattttggggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39647" stop="42523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39944" g_stop="40153" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="657" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42223" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="723" r_length="66" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E699249" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39944" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTTCTTTCTTCATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGT-CCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTT</genome_strand>
        <mrna_strand>CGCGTTTCTTTCTTCATCGTCTTCATCAAGAGAGAGATTTTTTCCAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCCTTGCCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705577" ref_strand="+" ref_description="SGN-E705577 [FA27CB12]">
      <seq>agggtcttcatcaagagagagattttttcgaacactgaatcagccatggcggctctacagtatttggaatcgctacgcaatgatcatccagagctttctgattggtacacgacgcttgcagatctgtaccaacgcaagctctggcaccagctctctctcaagctcgaacagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39662" stop="41838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39959" g_stop="40153" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41538" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="621" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E705577" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39959" e_stop="40153"/>
          <exon e_start="41113" e_stop="41538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCT</genome_strand>
        <mrna_strand>AGGGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581919" ref_strand="+" ref_description="SGN-E581919 [7551]">
      <seq>atcatcttcatcgagagagaggatttttcgaacactgaatcagctatggcggctctacagtacttgggaatcgttacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctatatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattgcggagaaagatgctgcaataggttatctggaaggagtggcagagaaactccaaaatactaaagagacacggatcagaggagccaatactttatattaaagttgcagattgccctatttaaggctttgaaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39659" stop="41642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39959" g_stop="40153" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41339" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="426" r_length="230" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E581919" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39959" e_stop="40153"/>
          <exon e_start="41113" e_stop="41339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTA-TTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATT-CGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGAT-AGAGGAACCAATACTTTATATT-AAGTTGCAGATTGCCCTATTTAA</genome_strand>
        <mrna_strand>ATCATCTTCATCGAGAGAGAGGATTTTTCGAACACTGAATCAGCTATGGCGGCTCTACAGTACTTGGGAATCGTTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTATATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTGCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTGGCAGAGAAACTCCAAAATACTAAAGAGACACGGATCAGAGGAGCCAATACTTTATATTAAAGTTGCAGATTGCCCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616134" ref_strand="+" ref_description="SGN-E616134 [65940]">
      <seq>cttcatcgagagagaggatttttcgaacactgaatcagctatggcggctctacagtacttggaatcgttacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctatatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtggcagagaaactccaaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39664" stop="41580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39964" g_stop="40153" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41280" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="358" r_length="168" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E616134" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39964" e_stop="40153"/>
          <exon e_start="41113" e_stop="41280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACT</genome_strand>
        <mrna_strand>CTTCATCGAGAGAGAGGATTTTTCGAACACTGAATCAGCTATGGCGGCTCTACAGTACTTGGAATCGTTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTATATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTGGCAGAGAAACTCCAAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468332" ref_strand="+" ref_description="SGN-E468332 [cSTB-3-G12]">
      <seq>cgagagagagaatttttcgaacactgaatcagctatggcggctctacagtacttggaatcgctacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaagctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatancttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39670" stop="41716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39970" g_stop="40153" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41416" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="488" r_length="304" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E468332" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39970" e_stop="40153"/>
          <exon e_start="41113" e_stop="41416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATG</genome_strand>
        <mrna_strand>CGAGAGAGAGAATTTTTCGAACACTGAATCAGCTATGGCGGCTCTACAGTACTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATANCTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697685" ref_strand="+" ref_description="SGN-E697685 [FA03DC06]">
      <seq>agagattttttcgaacactgaatcagccatggcggctctacagtatttggaatcgctacgcaatgatcatccagagctttctgattggtacacgacgcttgcagatctgtaccaacgcaagctctggcaccagctctctctcaagctcgaacagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggaaacaagttgaatggctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39676" stop="43835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39976" g_stop="40153" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="625" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="706" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43535" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="743" r_length="37" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E697685" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39976" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTAT</genome_strand>
        <mrna_strand>AGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGAAACAAGTTGAATGGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567026" ref_strand="+" ref_description="SGN-E567026 [11086]">
      <seq>agaatttttcgaacactgaatcagctatggcggctctacagtacttggaatcgctacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgccacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgccatacatttcagtggattctctttcagagtcattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39678" stop="41856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39978" g_stop="40153" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41556" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="622" r_length="446" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E567026" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39978" e_stop="40153"/>
          <exon e_start="41113" e_stop="41556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTG-CACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTG-CATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAG</genome_strand>
        <mrna_strand>AGAATTTTTCGAACACTGAATCAGCTATGGCGGCTCTACAGTACTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470127" ref_strand="+" ref_description="SGN-E470127 [cSTB-17-G1]">
      <seq>atttttcgaacactgaatcatctatggcggctctacagtacttggaatcgctacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39682" stop="41825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39981" g_stop="40153" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41525" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="586" r_length="413" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E470127" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39981" e_stop="40153"/>
          <exon e_start="41113" e_stop="41525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGT</genome_strand>
        <mrna_strand>ATTTTTCGAACACTGAATCATCTATGGCGGCTCTACAGTACTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348834" ref_strand="+" ref_description="SGN-E348834 [cTOF-29-N17]">
      <seq>tttttcgaacactgaatcagccatggcggctctacagtatttggaatcgctacgcaatgatcatccagagctttctgattggtacacgacgcttgcagatctgtaccaacgcaagctctggcaccagctctctctcaagctcgaacagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactatttgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgttttcagtggattctcttttcggagtcattcaagctggattttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaatttggggggagttgcttgctcatcctatattaaagagtttggtagggacacaagttgaatggctatatcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39682" stop="43843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39982" g_stop="40153" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="622" r_length="450" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="705" r_length="83" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43543" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="750" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E348834" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39982" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTA-TTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACG-TTTCAGTGGATTCTC-TTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGA-TTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTT-TGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATC</genome_strand>
        <mrna_strand>TTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTTCAGTGGATTCTCTTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTGGGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437635" ref_strand="+" ref_description="SGN-E437635 [cSTA-4-B21]">
      <seq>cgaacactgtaacaaacattggggctctacagtacttggaatcgctacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaatgggatcaaaaagagtgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39687" stop="41671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39987" g_stop="40153" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41371" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="426" r_length="259" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E437635" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39987" e_stop="40153"/>
          <exon e_start="41113" e_stop="41371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGA</genome_strand>
        <mrna_strand>CGAACACTGTAACAAACATTGGGGCTCTACAGTACTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAATGGGATCAAAAAGAGTGCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408317" ref_strand="+" ref_description="SGN-E408317 [PPI-10-D6]">
      <seq>gaacactgaatcagctatggcggctctacagtacttggaatcgctacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatactttcagtggattctctttcagagtcattcaagctggatttggncgtttgatttgtccttatcagcattattgggagacaacgtatacaattttgggggagctgcttgctcatcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39688" stop="42538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39988" g_stop="40153" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="612" r_length="446" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42238" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="694" r_length="82" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E408317" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39988" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGG-CGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTT-GGGGAGTTGCTTGCTCATCCTAT</genome_strand>
        <mrna_strand>GAACACTGAATCAGCTATGGCGGCTCTACAGTACTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATAC-TTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGNCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGGAGCTGCTTGCTCATCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573020" ref_strand="+" ref_description="SGN-E573020 [32265]">
      <seq>ctgaatcagctatggcggtctacagtacttggaatcgnacgcaatgatcatccagagcttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctatatcacaatttcttcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtggcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttttagaacaggggaatgctacacttgacagcatgaccgatgttgacccctctgtgtatgccagttactattgggtttcatctcagtatcataaaacacggtaggagtttgcagagttttacaaaagtgccctcctctatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39733" stop="41816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39993" g_stop="40153" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41516" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="562" r_length="404" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E573020" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39993" e_stop="40153"/>
          <exon e_start="41113" e_stop="41516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCT</genome_strand>
        <mrna_strand>CTGAATCAGCTATGGCGG-TCTACAGTACTTGGAATCG-NACGCAATGATCATCCAGAGC-TTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTATATCACAATTTCTTCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTGGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTTTAGAACAGGGGAATGCTACACTTGACAGCATGACCGATGTTGACCCCTCTGTGTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACACGGTAGGAGTTTGCAGAGTTTTACAAAAGTGCCCTCCTCTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403377" ref_strand="+" ref_description="SGN-E403377 [PPC-10-M24]">
      <seq>cggctctacagtacttggaatcgctacgcaatgatcatccagagctttctgattggtacaccacgcttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtcagcattattgggagacaacatatacaattttggggagctacttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcatttcacactggtgatttagttcattatcaagaattttgtgcgtgtcatcaagctgctttaagtgctcaaccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39708" stop="43927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40008" g_stop="40153" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="593" r_length="447" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="674" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43627" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="803" r_length="129" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E403377" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40008" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTG-CCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCA</genome_strand>
        <mrna_strand>CGGCTCTACAGTACTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACCACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCAGCATTATTGGGAGACAACATATACAATTTTGGGGAGCTACTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTTCACACTGGTGATTTAGTTCATTATCAAGAATTTTGTGCGTGT-CATCAAGCTGCTTTAAGTGCTCAACCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453982" ref_strand="+" ref_description="SGN-E453982 [cSTS-21-D12]">
      <seq>agtacttggaatcgttacgcaatgatcacccagagctttctgattggtacaccacgccttgcagatctgtaccaacgcaagctctggcatcagctctctctcaagctcgaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctatatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtggcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttttagaacaggggaatgctacacttgacagcatgaccgatgttgacccctctgtgtatgccagttactattgggtttcatctcagtatcataaaacacggcaggagtttgcagagttttacaaaagtgccctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcatttgatttgtccttgtcagcattactgggagacaacgtatacaattttggggagctgcttgctcatcctataataaagagtttggtagggacacaagtcgaatggctatatcatatccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39717" stop="43847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40017" g_stop="40153" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="585" r_length="447" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="666" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43547" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="715" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E453982" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40017" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACG-CTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTG</genome_strand>
        <mrna_strand>AGTACTTGGAATCGTTACGCAATGATCACCCAGAGCTTTCTGATTGGTACACCACGCCTTGCAGATCTGTACCAACGCAAGCTCTGGCATCAGCTCTCTCTCAAGCTCGAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTATATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTGGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTTTAGAACAGGGGAATGCTACACTTGACAGCATGACCGATGTTGACCCCTCTGTGTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACACGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCCCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCATTTGATTTGTCCTTGTCAGCATTACTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTCGAATGGCTATATCATATCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479414" ref_strand="+" ref_description="SGN-E479414 [cSTD-9-F12]">
      <seq>tggtaccacccacgcttgcagatctgtaccaaccgccaagctctggcatcagctctctctcaagcctcgaacaagttcgttgctctcgctgtttttcaggctggtgaaaccgttgataccagctgtatcacaatttcattactgattttgagaccaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagaatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtcagcattattgggagacaacatatacaattttggggagctacttgctcatcctattatnaagaggtttggttgggacacaagttgaatggctatatcatatccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39761" stop="43847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40061" g_stop="40153" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="550" r_length="451" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="631" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43547" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="681" r_length="50" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E479414" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40061" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTA-CA-CGACGCTTGCAGATCTGTACCAA-CG-CAAGCTCTGGCACCAGCTCTCTCTCAAG-CTCGAAC-AGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACA-CGTTGATA-CAGCTGTATCACAATTTCATCACTGATTTTGAGA-CAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAG-ATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGA-GTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTG</genome_strand>
        <mrna_strand>TGGTACCACCCACGCTTGCAGATCTGTACCAACCGCCAAGCTCTGGCATCAGCTCTCTCTCAAGCCTCGAACAAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGAAACCGTTGATACCAGCTGTATCACAATTTCATTACTGATTTTGAGACCAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGAATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCAGCATTATTGGGAGACAACATATACAATTTTGGGGAGCTACTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATNAAGAGGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578894" ref_strand="+" ref_description="SGN-E578894 [86016]">
      <seq>gaacagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39824" stop="41772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40124" g_stop="40153" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41472" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="390" r_length="360" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E578894" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40124" e_stop="40153"/>
          <exon e_start="41113" e_stop="41472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACG</genome_strand>
        <mrna_strand>GAACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542646" ref_strand="+" ref_description="SGN-E542646 [TUS-64-A21]">
      <seq>acagtttgtcgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcacattctgtgcttgatggaaatcatcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39826" stop="43995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40126" g_stop="40153" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="475" r_length="447" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="556" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="752" r_length="196" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E542646" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40126" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG</genome_strand>
        <mrna_strand>ACAGTTTGTCGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATC-ACATTCTGTGCTTGATGGAAATCATCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561637" ref_strand="+" ref_description="SGN-E561637 [17874]">
      <seq>acagttcgttgctctcgctgtttttcaggctggtgacacgttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcagagtcattcaagctggatttggcgtttgatttgtccttatcagcattattgggagacaacgtatacaattttggggagctgcttgctcatcctattataaagagtttggttgggacacaagttgaatgggctatatcatatcccttgaaggcattcaaccactggtgatttagctcgttatcaagaattgtgcccggtcccatcaagctgctttaagtgctcaaccagcatgggtgcaaaaacgagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39826" stop="43928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40126" g_stop="40153" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="476" r_length="448" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="557" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43499" g_stop="43648" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="713" r_length="156" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E561637" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40126" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAG-AACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAAT-GGCTATATCATAT-CCTTGAA-GCATTCAA-CACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGT-CCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGC-AGAACGAGAAAAAG</genome_strand>
        <mrna_strand>ACAGTTCGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGGCTATATCATATCCCTTGAAGGCATTCAACCACTGGTGATTTAGCTCGTTATCAAGAATTGTGCCCGGTCCCATCAAGCTGCTTTAAGTGCTCAACCAGCATGGGTGCAAAAACGAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301615" ref_strand="+" ref_description="SGN-E301615 [cLEW-23-E1]">
      <seq>cagtttgttgctctcgctgtttttcaggctggtgacacggtgatacagctgtatcacaatttcatcactgattttgagacaaagatcaatcttctgaagcttgcacatttcgctgtaatcgtctctcggcaatattcggagaaagatgctggaataggttatctggaaagagtagcagagaagctccaaaatacttaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaagggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactatggggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtgcgatttgtccttgtctgctttactgggagacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="39827" stop="42503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40127" g_stop="40153" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41113" g_stop="41559" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="474" r_length="447" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42159" g_stop="42203" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="519" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E301615" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40127" e_stop="40153"/>
          <exon e_start="41113" e_stop="41559"/>
          <exon e_start="42159" e_stop="42203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTGTCGCTCTCGCTGTTTTTCAGGTATTTTATCGTATATCTCCCCGTTTTATACTTATTTTGTTGTTTTTAGGGACTTCTTGTGATAAATTAGGGGTTTTGCGTGATTTGAGTTTTGGAGTTGTAGTGATTGATGATAAAGTTAGGGGTGTTTGGTTTAATAAGCTGAAGCCTTAAAAAAGAAGGAGTTTTGATTATGAAAGGTTGGGAATTGTATTGAAAAAGAGATTTTTTTTTGTTGTTGTTGAGTTAGGGATTTGTAATTTAGGTTTTTGTGTTGGGAATTGGGGTTTATGAATATTCTAGGGTTTCGGGGAGTTGGAAAGGTGGCATCTTGGAGATAAGAGAAGTGAATTGAAGAACAAGAGAGCTTTAGTTGTGTAGCTTTTATTGTTATGATTTTAGGTGGTGATGTGTTGAACTTGAAATATAAGAGCGTGGAGTAAGCTTAGTTATGAGTGCTAATGAGAATTGCTCTGGAATTATGGTTATTGCCGTCTACCTCATTTTATGTGCATTTGGAGTTATGTGTCTGCATTTCGATGTTGCTTGCCAGTGGTATTTCACAAGTGGGGTTTGAAGAGGGTAGATCTTATCCCTACCTTGGGAGGTAGAGAGGTTTCCGATAGACAGTACAAAAAAAAAAGATATACAGTTCATCAAGTTTAAATCATCTGATTCATAATTCTTCAAATAATTCTAAAATTCGGTTTGACTTGTCCTTTGAACACAACTTCTTGTAGGATAAATTGAGTTCTCTGAGTAGGTGCATGGTCAGGGTTCTAGATGTTCTTGAATCTTGCAATGTAGTCATGGAAATATGTGTCCATATAGCATAGTAAATGTGGTGTTTTTATTCTGTTCCTCATTATCTAACTGCAGCTTAAATTGCATATGCTTGATTTTCAGTTATCGTAGTTGTTTTTTATTGTATTGTATGCAGATCTAATGCCTTCCGTTTTGTTTCCTTATTTTGTTCTTAGGCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAAC</genome_strand>
        <mrna_strand>CAGTTTGTTGCTCTCGCTGTTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGACACGGTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAAGAGTAGCAGAGAAGCTCCAAAATACTTAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAAGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATGGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTGCGATTTGTCCTTGTCTGCTTTACTGGGAGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411999" ref_strand="+" ref_description="SGN-E411999 [STM-15-H17]">
      <seq>gttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcagagtcattcaagctggatttggcgtttgatttgtccttatcagcattattgggagacaacgtatacaattttggggagctgcttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagctcgttatcaagaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgntgcaaaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="40824" stop="43995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41124" g_stop="41559" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="517" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="714" r_length="197" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43781" g_stop="43789" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="723" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E411999" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E411999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41124" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
          <exon e_start="43781" e_stop="43789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGC</genome_strand>
        <mrna_strand>GTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGCTCGTTATCAAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGNTGCAAAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469917" ref_strand="+" ref_description="SGN-E469917 [cSTB-15-J3]">
      <seq>gttgatacagctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcaataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtatcatctcagtaccataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcagagtcattcaagctggatttggcgtttgatttgtccttatcagcattattgggagacaacgtatacaattttggggagctgcttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagctcgttatcaagaattgtgccgtgtccatcaagctgctttaagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="40824" stop="43918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41124" g_stop="41559" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="517" r_length="81" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43499" g_stop="43618" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="637" r_length="120" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E469917" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41124" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCT</genome_strand>
        <mrna_strand>GTTGATACAGCTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCAATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTATCATCTCAGTACCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCAGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTATCAGCATTATTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGCTCGTTATCAAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561140" ref_strand="+" ref_description="SGN-E561140 [17085]">
      <seq>ctgtatcacaatttcattactgattttgagacaaagatcaatcttctgaagcttgcacattttgctgtaatcgtctctcggcaatattcggagaaagatgctgcgataggttatctggaaggagtagcagagaaactccaaaatactaaagagacacggatagaggagccaatactttatattaagttgcagattgccctatttaagcttgaacaaggggatcaaaaagagtgcaagaagcttctagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggagtttgcagagttttacaaaagtgctctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtcagcattattgggagacaacatatacaattttggggagctacttgctcatcctattataaagagtttggttgggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcattatcaagaattgtgccgtgtccatcaagctgctttaagttgctcaaacaagcattgttgcagaacgaagaaaaatcttctcgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="40834" stop="43959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41134" g_stop="41559" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="507" r_length="81" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43499" g_stop="43659" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="671" r_length="164" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E561140" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41134" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAG-TGCTC-AACCAGCATTATTGCAGAACG-AGAAAAAGCTTCTCGAGAA</genome_strand>
        <mrna_strand>CTGTATCACAATTTCATTACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTTGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGCGATAGGTTATCTGGAAGGAGTAGCAGAGAAACTCCAAAATACTAAAGAGACACGGATAGAGGAGCCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTTGAACAAGGGGATCAAAAAGAGTGCAAGAAGCTTCTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAGTTTGCAGAGTTTTACAAAAGTGCTCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCAGCATTATTGGGAGACAACATATACAATTTTGGGGAGCTACTTGCTCATCCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTTGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCATTATCAAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTTGCTCAAACAAGCATTGTTGCAGAACGAAGAAAAATCTTCTCGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339828" ref_strand="+" ref_description="SGN-E339828 [cTOF-3-E1]">
      <seq>ctcgtgccgatctggaaggagtagcagagaagctccaaaatactaaagagacacggatagaggaaccaatactttatattaagttgcagattgccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="40946" stop="44124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41237" g_stop="41559" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="404" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="601" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43781" g_stop="43824" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="645" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E339828" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41237" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
          <exon e_start="43781" e_stop="43824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAG</genome_strand>
        <mrna_strand>CTCGTGCCGATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700977" ref_strand="+" ref_description="SGN-E700977 [FA14CG07]">
      <seq>ccctatttaagctagaacaaggggatcaaaaagagtgcaagaggcttttagaacaggggaatgctacaattgacagcatgaccgatgttgacccctctgtttatgccagttactattgggtttcatctcagtatcataaaacgcggcaggaatttgcagagttttacaaaagcgctctcctctatcttgcatacgtttcagtggattctctttcggagtcattcaagctggatttggcgtttgatttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagtatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtgttcctcagatcaagtcactgcgagatcggctagacaattgggtggataaagtacacactgccttgttatctgtggaagctgaaactcctgatttggtttcatcataatcttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="41030" stop="45150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41330" g_stop="41559" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="311" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="508" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43781" g_stop="43880" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="608" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44596" g_stop="44850" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="863" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E700977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41330" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
          <exon e_start="43781" e_stop="43880"/>
          <exon e_start="44596" e_stop="44850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCT</genome_strand>
        <mrna_strand>CCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590127" ref_strand="-" ref_description="SGN-E590127 [43716]">
      <seq>aggagtttgcagagttttacaaaagtgccctcctctatcttgcatacatttcagtggattctctttcggagtcattcaagctggatttggcatttgatttgtccttgtcagcattactgggagacaacgtatacaattttggggagctgcttgctcatcctataataaagagtttggtagggacacaagtcgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaggaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgttgcagaacgagaaaaagcttcttgagaagatcaacattctatgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagcatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagataattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcgtaatctttagtttcccagtttgcacttcctggtccctgcaacactccgatttcttcgtcctctcttttttgctgtccttattagagcttgtaacacaagcagaggaagtagggagacatttgtttagtttctcatgcctacactctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="41177" stop="45226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41477" g_stop="41559" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.974" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42159" g_stop="42239" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="164" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="361" r_length="197" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43781" g_stop="43880" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="461" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715">
            <donor d_prob="0.682" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44596" g_stop="44924" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="790" r_length="329" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E590127" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590127" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41477" e_stop="41559"/>
          <exon e_start="42159" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
          <exon e_start="43781" e_stop="43880"/>
          <exon e_start="44596" e_stop="44924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTGGTATGTTGCCATTTTATTTTCTGCCTTTTATCCAAAGAACGATCTATTTATTGTCCGTGTCTAGCAGATCTCTGACCTCTATATGTTGGTTTCTCTTGCCTTAGTGCTGTTGGTAATATATCTCTTTGCTCAAAGTACTAACATTGAATAAGGTCTAAAATGGGGTGTACTGTTGGCGTCATGAAGAAGGTTGCTAAGACATGTTGCTAGTAGATATCCGTGATATACTTGTAGAGTACCATTTTAAATTTATTTATGCTCCTTACATTTTATACTACTTGGTACCCAAAGAGAATTGAATCTTTGACATAAAGTCTGTATAAGCTGTTGATTTTTTTAATTTGTGCGCATTTCATTGTGACAAATTATTTAGTATTAGAGAAATTGGCCTGAAAATCTGAATAGAGCAAACTGGATTATGGGGGATTCTTTTCACGCTTTGGGTAGGATTTTTTCATACCTGGAGATCTGGAGATTCTTTCTGTAACCTCAGTCTTTTAAGAAAATGCATCTGAAATTGGTTGAATGTCAATATATTTGAGGTTTTCTATTCTATGTAACTGTCTCTTCTATGTAATTGTTTCTTCTATCTTGTCTAGGATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAA-CAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCT</genome_strand>
        <mrna_strand>AGGAGTTTGCAGAGTTTTACAAAAGTGCCCTCCTCTATCTTGCATACATTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGCATTTGATTTGTCCTTGTCAGCATTACTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTCGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAGGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGTTGCAGAACGAGAAAAAGCTTCTTGAGAAGATCAACATTCTATGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGCATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGATAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCGTAATCTTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAACACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTCCTTATTAGAGCTTGTAACACAAGCAGAGGAA-GTAGGGAGACATTTGTTTAG-TTTCTCATGCCTACACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542645" ref_strand="+" ref_description="SGN-E542645 [TUS-64-A21](-)">
      <seq>atttgtccttgtctgctttactgggagacaacgtatacaattttggggagttgcttgctcatcctataataaagagtttggtagggacacaagttgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagtatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtgttcctcagatcaagtcactgcgagatcggctagacaattgggtggataaagtacacactgccttgttatctgtggaagctgaaactcctgatttggtttcatcataatcttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgctgtgcttacgagagcttgtaacacaacagaggaattttgtgagacatttgtttagttttctcaggcctacactctgtactgtggcttatatcccaaatcattgatctgtcactgttttctggaaaaaaaaaaaaataagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="41872" stop="45272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42172" g_stop="42239" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="265" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43781" g_stop="43880" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="365" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44596" g_stop="44971" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="741" r_length="376" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="757"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E542645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42172" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
          <exon e_start="43781" e_stop="43880"/>
          <exon e_start="44596" e_stop="44971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGG</genome_strand>
        <mrna_strand>ATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449002" ref_strand="+" ref_description="SGN-E449002 [cSTS-5-G7]">
      <seq>atttgtccttgtcagcattactgggagacaacgtatacaattttggggagctgcttgctcatcctataataaagagtttggtagggacacaagtcgaatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaggaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgttgcagaacgagaaaaagcttcttgagaagatcaacattctatgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagcatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgngttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagataattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcgtaatctttagtttcccagtttgcactttctggtccctgcaacactnncgattcttcgtcctctcttttttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="41872" stop="45150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42172" g_stop="42239" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43499" g_stop="43695" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="265" r_length="197" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43781" g_stop="43880" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="365" r_length="100" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715">
            <donor d_prob="0.682" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44596" g_stop="44850" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="621" r_length="256" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E449002" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42172" e_stop="42239"/>
          <exon e_start="43499" e_stop="43695"/>
          <exon e_start="43781" e_stop="43880"/>
          <exon e_start="44596" e_stop="44850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATAGTAAGTTCTTTATTTTTCTTTTATTTGGATTAATCAAAATCTTCTATTGAATGTCACATGAAGTTGATGTCATGCATATAAGAAATTTCCATGGAAGTCATCCATCTATGGATGTTCCTTTACACACAGTAATACTACTGAAACTAAAGTTTGGTTAAAATTTCCACAGTGGACTCTCTACTATTCTCAAAAATTGTAGGTTGTAATACAATTGTTGTTTTCTTTGCTGGCTAAGCTGTCCATTGTAGGAATTAGCGTTGCTGTCTTCCTAGTTGCTAGATTTGTATAGACTTATCTTGCGTTGTCATTTTTGCTGGAATGAGATCTTGTTAGGTTTATAGTAGCAAGCTTTCCCTGTTAATGTAGTCCCACCAATTCCCTTCCATTCCAGGCTGTCCATGACTTGGGTATGCACTGTCGCTTGCTTTAATTGCCCAGCAATTTTATATTTTTTTAGTTAGCAGTCTTTACAGTTTCCTCCAAGGACGATGTTCCTGCAGTTCCACTTACCATAAAAAATAAAGAAAGATTTTAGCAGTTTCTATCTCTATATTGAGCCTTTTTTTTGTGTCAGACACAGCAGCTATATGGTATACATCAGAGGATACTCTTTTATAGAAAGTTGGCCCAACCATCTGTCATGCCAAAAACACATGTTTTCTCCATTTCCTAGTGTGTGGGCTTCTCTTGTACCAAATTTATCCCACAGCTTCCTCATGAACTTTCACAGACCATCCCATAAGGATAGGTGTTTGCTTGTTTACACCATCTAATCCATTTTCCATATTGGCATCTGCCACTCTTTTCCAAAGTATATCATCTTCACAGTTGCATCTTAACAGTTGCATCTTCACTACCGTTTCAGCAGCAGGTTTTGGTTGTGTAGATGAAGGTCTTTCATTCCAAGCCACCCATTTGATTTGGTTTGATGAGTTCTTCCTGTTTGGCAAGGTGGTATTTATGTTGACCACTTGAGCTTCGCCAAGGGAACTTATCTCATCTACTCCAACAGGTGCTTTTGCTAAAAAAGTATCAAAAAAATCTTTAGAAGAAACTAGTATAAAGTATCTACAGTGTACCCATAGCACAAAGCTGTGTGAAATCTCATAAATTCAGTTTCGACTATCAAATAGGCTTCAGAGTTCATAAGTGGTGGAATTGATTGGAGGATTATATTAGAGAGCCATAGGGTGATCTTATGTTGGTTTCTTTGGCAACATTATGTAGAACTCATTATGGCTTTATCTTTTTTTTAACAGATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCT</genome_strand>
        <mrna_strand>ATTTGTCCTTGTCAGCATTACTGGGAGACAACGTATACAATTTTGGGGAGCTGCTTGCTCATCCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGAGTTTGGTAGGGACACAAGTCGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAGGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGTTGCAGAACGAGAAAAAGCTTCTTGAGAAGATCAACATTCTATGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGCATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGNGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGATAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCGTAATCTTTAGTTTCCCAGTTTGCACTTTCTGGTCCCTGCAACACTNNCGATTCTTCGTCCTCTCTTTTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352152" ref_strand="+" ref_description="SGN-E352152 [cTOS-13-O13]">
      <seq>aatggctatatcatatccttgaagcattcaacactggtgatttagttcgttatcaagaattgtgccgtgtccataaagctgctttaagtgctcaaccagcattattgcagaacgagaaaaagcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccagcagaggatagaactattccattgagtgccattgcagagcgcactaaacttagcgtggaagatgtagagtatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtgttcctcagatcaagtcactgcgagatcggctagacaattgggtggataaagtacacactgccttgttatctgtggaagctgaaactcctgatttggtttcatcataatcttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgctgtgcttacgagagcttgtaacacaacagaggaattttgtgagacatttgtttagttttctcaggcctacactctgtactgtggcttatatcccaaatcattgatctgtcactgttttctggatttaggtgcttgttcagtcaccactttgtagtctatagactactatagcgacgacatcgtcttaacggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="43227" stop="45343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43527" g_stop="43695" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43781" g_stop="43880" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="269" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715">
            <donor d_prob="0.682" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44596" g_stop="45043" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="717" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E352152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43527" e_stop="43695"/>
          <exon e_start="43781" e_stop="43880"/>
          <exon e_start="44596" e_stop="45043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCACCACTTTGTAGTCTATAGACTACTATAGCGACGACATCGTCTTAACGGTTT</genome_strand>
        <mrna_strand>AATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCACCACTTTGTAGTCTATAGACTACTATAGCGACGACATCGTCTTAACGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603141" ref_strand="-" ref_description="SGN-E603141 [56223]">
      <seq>gatttaggtcattatccagaattgtgccgtgtccatcaagctgctttaagtgctcaaccagcattgtttgcagaacgagaaaaatcttctcgagaagatcaacattctgtgcttgatggaaatcatcttcagtcgcccggcagaggatagaactattccattgagtgccattgcagagcgcactaagcttagtgtggaagatgtagagcatctcttaatgaagagtctctctgtacatctgatagagggaataatcgatcaagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagacaattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcataatctttagtttcccagtttgcacttcctggtgcctgcaacactccgatttcttcgtcctctcttttttgctgtccttatgagagcttgtaacacaacagaggaagtagggagacatttgtttagtttctcaggcgtacactctatgctgtggcttttatcccaaatcattgatctgtcactgttttctggatttaggtgcttgttctttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="43265" stop="45292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43565" g_stop="43695" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43781" g_stop="43880" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="232" r_length="100" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715">
            <donor d_prob="0.682" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44596" g_stop="44993" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="629" r_length="397" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E603141" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603141" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43565" e_stop="43695"/>
          <exon e_start="43781" e_stop="43880"/>
          <exon e_start="44596" e_stop="44993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATT-ATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAGGTTTTGCAGACATTTTGCATATAGTGGTACCTCTGTAATTTATTTTTGTTAAACTGTAACTTATAGAGAAAGCATTTGCGTGCAGTCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCTGTGAGTGAATTATTGTTTGTTTAATTAAGATATAAATCTATCCTCTGTAACTAGCTTCCACGCACCATGACATGCATAAGAACGAAATGCTCATCTTTGTAATGTTATTGGATGGTCAATTGTACCGGGATGTCATATGGCAACATATTTTTTCCTCTATGTTCTCAAGTCATGCATATGCTCCACACCTAATTTATGCGTTTTCTCAACTTATAATTTAAGTGGGCTTCCAAAATGCTTTGGATAGAGGAAGTATAATAACCATGATCAGCTTCATTGCTTAGTATATCAAATCATCAAAAGTAGGACAGCTCCTTCTATAAGAAGGATAACCTTATAAAAAAAATCATTTGATTCAAGTGAATGGTCAATTTCTTACCTCTTAAGTTGTGGCATCGGTCGAGTTTTTTTGCTGTGCAGTTTATATATCCCTACAGTCAATTGGAAGTAATTCTCATTATTACATTATGCCCCCACCAAAAGCTCCTCCACATGAGCAGTATGTAATGTTGCAACCAATAAGTTTTTATATGTTCTCTTATGCGTTTTAGGTTCCTGCGTTTCTCATTCTGTTCCCCTTTCTATTTTTCTCGTCATGAATGTTTACTTTTCCAACATCCCATGAAGTTTTCCTGTGATATATGGTGATGTTTTACATGTCGGAAATTAGGCTAATGAACCATTTTTCTCCGGTATGATGTTGTGTTTACTGTAGGTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCAC</genome_strand>
        <mrna_strand>GATTTAGGTCATTATCCAGAATTGTGCCGTGTCCATCAAGCTGCTTTAAGTGCTCAACCAGCATTGTTTGCAGAACGAGAAAAATCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG.....................................................................................TCGCCCGGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAGCTTAGTGTGGAAGATGTAGAGCATCTCTTAATGAAGAGTCTCTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTTAGTTTCCCAGTTTGCACTTCCTGGTGCCTGCAACACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTCCTTATGAGAGCTTGTAACACAACAGAGGAA-GTAGGGAGACATTTGTTTAG-TTTCTCAGGCGTACACTCTATGCTGTGGCTTTTATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584421" ref_strand="+" ref_description="SGN-E584421 [10247]">
      <seq>tctgataagggaataatcgatcagtggaagggactgttcacgtgtcctgggttcaaccaagagttttgggtattcctcagatcaagtcattgcgggatcggctagataattgggtggataaagtacacactgcattgttatccgtggaagctgaaactcctgatttggtttcatcgtaatctttagtttcccagtttgcacttcctggtccctgcagcactccgatttcttcgtcctctcttttttgctgtccttatgagagcttgtaacacaacagaggaagtagggagacatttatttagtttctcaggcgtacactctatactgtggcttatatcccaaatcattgatctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="44301" stop="45259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44601" g_stop="44959" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E584421" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44601" e_stop="44959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATC-TTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTC</genome_strand>
        <mrna_strand>TCTGATA-AGGGAATAATCGATC-AGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTATTCCTCAGATCAAGTCATTGCGGGATCGGCTAGATAATTGGGTGGATAAAGTACACACTGCATTGTTATCCGTGGAAGCTGAAACTCCTGATTTGGTTTCATCGTAATCTTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTCCTTATGAGAGCTTGTAACACAACAGAGGAA-GTAGGGAGACATTTATTTAG-TTTCTCAGGCGTACACTCTATACTGTGGCTTATATCCCAAATCATTGATCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426543" ref_strand="-" ref_description="SGN-E426543 [STM-46-B22]">
      <seq>gctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaggggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgatttctcttcttcagatgattctcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatgggcttccatcatcgagagggagaacgaaggaaaataaccaaaccatttttggtggaagcaaaacaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgaccaaatgataagcacgaggagcaagacgaaagcagaagtagtttcagacttgaagaatcacaattcatgtcaaaacagacatcatatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacatgtggaaataagggctcaaaagagacggatgatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatccaagtcgaagaacacaccttcaagaaggcgatcaacatcctgttcgttcaaaagtaaaacagtaagcagggctaagtagtcagcccattctagcctgcatatactaattcgaaaagtttgtgagtgatgctactctagttgacaaaagttataactaaacttgaaaactcttcaaagagaaaccttattgagtttgattgactcatcctcggtagtgaaaaattctgcatttccccatttagttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="50771" stop="46977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50471" g_stop="50432" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50322" g_stop="50206" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="157" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48752" g_stop="48672" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="238" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48671" i_stop="48597" i_length="75">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48596" g_stop="48498" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47731" g_stop="47319" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="747" r_length="410" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E426543" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="50471" e_stop="50432"/>
          <exon e_start="50322" e_stop="50206"/>
          <exon e_start="48752" e_stop="48672"/>
          <exon e_start="48596" e_stop="48498"/>
          <exon e_start="47731" e_stop="47319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGTCGAAGAACACACCTTCAAGAAGACGATCAACATCCTGTTCGTTCAAAAGTAAAACAGTAAGCAGGGGTATGTAGTCAACTCATACTAGCCTGCATATTATAGTAATTCGAAAAGTTTGTGAGGTGATGCTACTCTACTTGACCAAAGTTATAACTTAACTTG-AAACTCTTTAAACAGAAACCTTATTAA</genome_strand>
        <mrna_strand>GCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAGGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGATTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCTCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGGCTTCCATCATCGAGAG...........................................................................GGAGAACGAAGGAAAATAACCAAACCATTTTTGGTGGAAGCAAAACAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGACCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGTAGTTTCAGACTTGAAGAATCACAATTCATGTCAAAACAGACATCATATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACATGTGGAAATAAGGGCTCAAAAGAGACGGATGATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGTCGAAGAACACACCTTCAAGAAGGCGATCAACATCCTGTTCGTTCAAAAGTAAAACAGTAAGCAGGGCTAAGTAGTCAGCCCATTCTAGCCTGC--A-TATACTAATTCGAAAAGTTTGTGA-GTGATGCTACTCTAGTTGACAAAAGTTATAACTAAACTTGAAAACTCTTCAAAGAGAAACCTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711074" ref_strand="+" ref_description="SGN-E711074 [FA57DG05]">
      <seq>gacctctcatacaaacaatattgttaaaagaataggaaaagaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgcattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataatcaaagcatttttggtggaagcaaaccaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagacttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacaagtggaaataagtgctcaaaagagaccgataatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51138" stop="47208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50838" g_stop="50591" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50482" g_stop="50432" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="299" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50322" g_stop="50206" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="416" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48752" g_stop="48672" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="497" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48671" i_stop="48597" i_length="75">
            <donor d_prob="0.892" d_score="0.98"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48596" g_stop="48498" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="596" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47731" g_stop="47508" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="820" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E711074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50838" e_stop="50591"/>
          <exon e_start="50482" e_stop="50432"/>
          <exon e_start="50322" e_stop="50206"/>
          <exon e_start="48752" e_stop="48672"/>
          <exon e_start="48596" e_stop="48498"/>
          <exon e_start="47731" e_stop="47508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGT</genome_strand>
        <mrna_strand>GACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGCATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAATCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688076" ref_strand="+" ref_description="SGN-E688076 [T3_tus_85_I05]">
      <seq>cacaatttggcccttttgacctctcatacaaacaatattgttaaaagaataggaaaagaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataaccaaagcatttttggtggaagcaaaccaaatacaagggccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagacttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacaagtggaaataagtgctcaaaagagaccgataatgggaaacttgatcctcgagcaagagcaaggctagtgaaaggtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51155" stop="47212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50855" g_stop="50591" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50482" g_stop="50432" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50322" g_stop="50206" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="433" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48752" g_stop="48672" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="514" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48671" i_stop="48597" i_length="75">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48596" g_stop="48498" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="613" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47731" g_stop="47512" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="833" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E688076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50855" e_stop="50591"/>
          <exon e_start="50482" e_stop="50432"/>
          <exon e_start="50322" e_stop="50206"/>
          <exon e_start="48752" e_stop="48672"/>
          <exon e_start="48596" e_stop="48498"/>
          <exon e_start="47731" e_stop="47512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</genome_strand>
        <mrna_strand>CACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601861" ref_strand="+" ref_description="SGN-E601861 [54910]">
      <seq>gatgattctcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatgggcttccatcatcgagaggttacatacttctttaacaactttttgttaccactcactttgcaagtggattgactttcactcggttgattggcagggagaacgaaggaaaataaccaaaccatttttggtggaagcaaaacaaatacaagggccacttcagtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaaggtgaaagcagaagtagtttcagacttgaagaatcacaattcatgtcaaaacagacatcatatcaagtgcaaaacttttccaaaatcaattcaagattcacatcatacatgtggaaataagggctcaaaagagacggatgatgggaaacttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="49053" stop="47246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48753" g_stop="48498" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47731" g_stop="47546" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="443" r_length="186" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E601861" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48753" e_stop="48498"/>
          <exon e_start="47731" e_stop="47546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAAC-TTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATC</genome_strand>
        <mrna_strand>GATGATTCTCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGGCTTCCATCATCGAGAGGTTACATACTTCTTTAACAACTTTTTGTTACCACTCACTTTGCAAGTGGATTGACTTTCACTCGGTTGATTGGCAGGGAGAACGAAGGAAAATAACCAAACCATTTTTGGTGGAAGCAAAACAAATACAAGGGCCACTTCAGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGGTGAAAGCAGAAGTAGTTTCAGACTTGAAGAATCACAATTCATGTCAAAACAGACATCATATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACATGTGGAAATAAGGGCTCAAAAGAGACGGATGATGGGAAACTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334847" ref_strand="+" ref_description="SGN-E334847 [cTOE-3-I18]">
      <seq>acaatttggcccttttgacctctcatacaaacaatattgttaaaagaacaggaaaagaaaagcaaccccttttaatgatttgtttccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagacatctaaagccaaacaggaggaggaggtggagagttttgagctatttgtatagttctaaagcatattctaagttaggactcaggaaaagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatggacttccatcattgagagggagaatgaaggaaaataaccaaagcatttttggtggaagcaaaccaaatacaagggcccacttctgtccctcgaccacgtgcagtcttatcaagccctgttaatgatcaaatgataagcacgaggagcaagacgaaagcagaagcagtttcagccttgaagaatcacaatacatgtcaaaacagacatcacatcaagtgcaaaacttttccaaaatcaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51154" stop="47308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50854" g_stop="50591" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50482" g_stop="50432" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="316" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50322" g_stop="50206" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="433" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48752" g_stop="48672" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="514" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48671" i_stop="48597" i_length="75">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48596" g_stop="48498" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="614" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766">
            <donor d_prob="0.960" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47731" g_stop="47608" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="738" r_length="124" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E334847" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50854" e_stop="50591"/>
          <exon e_start="50482" e_stop="50432"/>
          <exon e_start="50322" e_stop="50206"/>
          <exon e_start="48752" e_stop="48672"/>
          <exon e_start="48596" e_stop="48498"/>
          <exon e_start="47731" e_stop="47608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAG-AAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGG-CCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTGGTAATCCCTAACGAACTTTGCATTCTAGAATTAATTCCTTCGTGGGGAAACACAAACTTGGACTTCTAAATACTGAATTGTGTAGCAAAACCATATCTTTTCATGAACGAAGTGTGATGGAAAAAACCTGGAAATGCACTTGAGGAACAATGATTTAATAGCATTTTTTGTGATTATTGTTGACTTTAACATGTAAATATTACATGTCTTGTCTTTGCACAGTTCCTTTTCTGATACTTTAATCTTGTTAATTCGGGGCCAGTTAATGTGGCCGTGTGTAAGAGAAGGAAATCCATAATAGGTATGTAGAATAGCTTCGTCTTCATTGTGAGTGACTACATGCCAAATCATACCCTCGCGTAGATCGCTGGTGCATAGGATATATACTTCTGCTATGGCTATGCACATAATCCACATTTACGTACTGGTTGTCAGTGAGACATCATGGGTAGTTCTCTGTATTTGATTAAGCACGGGTGATCTGATTATCCTCACATCAGAATGGACATACCAACACATCTGACAAATTTGTTTAGAAGAGAAACAGGAGTGTAGGAGTGTAGTTGTTCTTGATTCTGCACTATTTTGTGAAACTTGTTCATGGGTTTTACATGTTTAGCACGTTAATTAACCGTGAATCAGTGGTAGATTGAGATCATCGAATACAGTACCTCTTGTAAATTTATAACTGTTGTGCGGTTTACAAAGATAAAACACACTATACATGGTGTATCTCTTGCTGAAAGTATTGTATATTTATTTACAGTTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCA</genome_strand>
        <mrna_strand>ACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAACAGGAAAAGAAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGACATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG...........................................................................GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGCCTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482873" ref_strand="+" ref_description="SGN-E482873 [cSTE-5-L8]">
      <seq>gaaacttgaaagcaacctgcaattagttgaccatatgatctttcttccattacctaccgtacatgcttgtaaaaagcatcagattctgtcaactttgccgaaagtgcttcaaaaaaggacccttactatatagtcccctcaatttgcccccttttgacctctcatacaaacaatattttaaaaaataggcaaagaaagccccttttaatgatttgtgtccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacagcaggaagaggagagttttgagctatttgtaaagtgctgaagcatattctaagttaggagtcagggacagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgatttctcttcttcagatgattctcctacatcagttgtgaggataccccgagcatgtattttaagcccagacagacatgggcttccatcatcgagagggagaacgaanganaataaccaaaccatttttggtggaagcaaaacaaatacagggccacttctgtccctcnaccacgtgcagtcttatcaagcccctgttatgaccaaatgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51295" stop="48187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50995" g_stop="50591" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50482" g_stop="50432" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="446" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="0.96"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50322" g_stop="50206" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="563" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48752" g_stop="48672" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="644" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48671" i_stop="48597" i_length="75">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.933" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48596" g_stop="48504" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="736" r_length="92" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E482873" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50995" e_stop="50591"/>
          <exon e_start="50482" e_stop="50432"/>
          <exon e_start="50322" e_stop="50206"/>
          <exon e_start="48752" e_stop="48672"/>
          <exon e_start="48596" e_stop="48504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATGATATCTTTCTTCGATTACCTACCGTACATGCTTGTGAATAAGCATCAGATTCTGTCAAATTTGCCGAAAGTGCTTCAAAAATGGACCCTTTCTGTATAGTCCCCACAATTTG-GCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAA</genome_strand>
        <mrna_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATG--ATCTTTCTTCCATTACCTACCGTACATGCTTGT-AAAAAGCATCAGATTCTGTCAACTTTGCCGAAAGTGCTTCAAAAAAGGACCCTTACTATATAGTCCCCTCAATTTGCCCCCTTTTGACCTCTCATACAAACAATATT-TTAAAA-AATAGGCAAAGAAAG---CCCCTTTTAATGATTTGTGTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGCAGGA--A-GAGGAGAGTTTTGAGCTATTTGTAAAGTGCTGAAGCATATTCTAAGTTAGGAGTCAG............................................................................................................GGACAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGATTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCTCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGGCTTCCATCATCGAGAG...........................................................................GGAGAACGAANGANAATAACCAAACCATTTTTGGTGGAAGCAAAACAAATAC-AGGGCCACTTCTGTCCCTCNACCACGTGCAGTCTTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322936" ref_strand="+" ref_description="SGN-E322936 [cTOB-30-I2]">
      <seq>tttgagctatttgtatagttctaaagcatattctaagttaggactcaggaatagagatagctggttgactcttgatagcttctgcaagttaaaagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttccataagtgacttctcttcttcagatgattcgcctacatcagttgtgaggataccccgagcatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="50938" stop="48408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50638" g_stop="50591" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50482" g_stop="50432" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="99" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50322" g_stop="50206" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="216" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48752" g_stop="48708" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="261" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E322936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50638" e_stop="50591"/>
          <exon e_start="50482" e_stop="50432"/>
          <exon e_start="50322" e_stop="50206"/>
          <exon e_start="48752" e_stop="48708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAGGTACACTTTTGTTTGTGAGGAACCCCATCTTTCTTCATCCTTGTATGATATTTCATTTTTGCTAATATAGCTGAGTATAGTTGTTATATCATAAAGTTTGTACCTTTGTCGAAGAAAGGTGATTTTCCAAGATGATAACTATTAGTTGAGTGATCATCTCAGAAATCATCCCAACATAACTTGATCTTTTGGTTGATTCTTTATAATCATGCGATTAACTTGTGTTATTTTTTTTTCTTTTTTTGTTGATTGACTAGTTTTGGGTTGCTCTTTTATCATGCTAGATTATTTGTAAATGAGGTATCTTGATCAGAATCATATCTTTCTATGGCTTTAGTCCAACAGCAAGCTTTCTGGAGAGTAGAATTTTTTGCCATTTAGATTTGTATGTCAGTATAGGGACAAATGCGAGGTTTTGAGAACCTCTAATGATGGAGAAATTTTAAATTGCCTTAAAAGACAAACTATTTGCCAATATTGGGATGAAACTAAGTGAAATGGATGTAGAAGTTTATATAGCCAACATCATCTTTGGGGTTTAGGTGTAGTTGAATTGAGCAGGCTTTGACTTTTGAGTAGATATAAATGTAAAGGATCATTTTTGCTTTAAATTTTCTCTTGTAAAGGGATTTCAACATGGCAGCATTGTTTTGGATTGCTTTTTAGTTCTTGAAATGATGTATAGATTGTTATACACAGTTTACCTAACTAATTGTAGTTCGCTTAGTTGTATTAGTAGTAATATTTTTCTTTTGCTTGTCTTCTTACTTTCCTTAAACTGGAGAGATTTTATATGTGGATTTTATTGTAATATACTGATGCAAGCAAAATGAAAAGTGCACGACATCACATTCTCTTTCACCTCCTAAGGATTTGCTACTTGTAAAGAATCCTGACATTAGAGCATTTCCATTTTGTGTCTGTTGTTCCTGAACCTCATCTATTTTAAGCAGAATCCCAATGTCGCGCTGGATTGGAAATCCTTCAAGTACTCTCTAGTGTGTGATGATCCTATTCAAAAGTTTTAGGCTGCAGCTTTCTACGATATATAGTCGATAGGCTAAGTTAGCTTCAGCAGATGCATATCCACTTCTATCTCATTACTACGAGACTGTTTTCTTGACATATACAAATTCCTTTCGTTCTTTCTTTGTTGTCACATTTGCTGTCTTGCATAGTGCTCGTTGAAGTCTTTGATTCATTGGTTTTATTCACTGTATGCTATTTCCAAAACCATGACACAGAGTATAGATGGTTGGATTTAAGCAAAAGATGGGAGTTTGCATATTAACATCCAGCAATAACTCAACTGAACTATTGTAGTAAACTTATTCCGTCAATACGTCATTGCCTTTCCATATCCATCATTTTATTTGTTCTCAGCTCTGATGGTGTCTGACTAGTTCATTGTTGTTTTCTTCTCTCCTCTGCTTCTTTCTGATGGTGTATAAAGATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTT</genome_strand>
        <mrna_strand>TTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG............................................................................................................GAATAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426542" ref_strand="+" ref_description="SGN-E426542 [STM-46-B22]">
      <seq>gaaacttgaaagcaacctgcaattagttgaccatatgatctttcttccattacctaccgtacatgcttgtaaaaagcatcagattctgtcaactttgccgaaagtgcttcaaaaaaggacccttactatatagtcccctcaatttgcccccttttgacctctcatacaaacaatattttaaaaaataggcaaagaaagccccttttaatgatttgtgtccattttcaagaatcattcatagtttttggttgaatattcacaggtttccactcctttttgtcactttcattaccaaagatttcacctttttaaagatatctaaagccaaacagcaggaagaggagagttttgagctatttgtaaagtgctgaagcatattctaagttaggagtcagggacagagatagctggttgactcttgatagcttctgcaagttannagacaatgtatccaagggttaaggtgagggtacagaaagaagaagatgatcagtatgcttatcagtctttgccatctttgaaggcttttgaatccctttcataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51295" stop="49922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50995" g_stop="50591" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50482" g_stop="50432" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="446" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109">
            <donor d_prob="0.333" d_score="0.92"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50322" g_stop="50222" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="546" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E426542" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50995" e_stop="50591"/>
          <exon e_start="50482" e_stop="50432"/>
          <exon e_start="50322" e_stop="50222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATGATATCTTTCTTCGATTACCTACCGTACATGCTTGTGAATAAGCATCAGATTCTGTCAAATTTGCCGAAAGTGCTTCAAAAATGGACCCTTTCTGTATAGTCCCCACAATTTG-GCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAGGTGGGGTTTTTGGGTTTTGGGGTTTTGTGTTTTCTTGATTTTTTTGAATATGGTTATTATTTTGCTGTTTTGATCTTATTTGCTGATATGGGTTTTCATTTTTTTCAGGAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAAGTAGGTTTCAATTTTGGTTTTTTAATGGTTTGAGTATATTGGATTCTGATTTTGGTGCCTTTGCTGAAAAGGGTATTTTGATTTTGTTTATTTTTTGAATTTTGTTAAGTGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGT</genome_strand>
        <mrna_strand>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATG--ATCTTTCTTCCATTACCTACCGTACATGCTTGT-AAAAAGCATCAGATTCTGTCAACTTTGCCGAAAGTGCTTCAAAAAAGGACCCTTACTATATAGTCCCCTCAATTTGCCCCCTTTTGACCTCTCATACAAACAATATT-TTAAAA-AATAGGCAAAGAAAG---CCCCTTTTAATGATTTGTGTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGCAGGA--A-GAGGAGAGTTTTGAGCTATTTGTAAAGTGCTGAAGCATATTCTAAGTTAGGAGTCAG............................................................................................................GGACAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTANNAGACAA.............................................................................................................TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTT-CATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746005" ref_strand="+" ref_description="SGN-E746005 [GI|47105397]">
      <seq>ggatatatagtttgcgttgactactattgaggtagtaggtagcatctattatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51827" stop="55016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52125" g_stop="52239" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="54712" g_length="1709"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="1824" r_length="1709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1825" polyA_stop="1838"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E746005" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1824</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52125" e_stop="52239"/>
          <exon e_start="53004" e_stop="54712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>GGATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447317" ref_strand="+" ref_description="SGN-E447317 [cSTA-26-C5]">
      <seq>tattgaggtagtaggtagcatctatctcttttagggttccatcgcccacacacactcttcactctggggtagatctccaaattctccgacggaaaaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcacatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaggttttattgagttctcaactgaagagggtaagcgtatatatggtgacatcattccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51849" stop="53856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52149" g_stop="52239" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.791"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="0.63"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53556" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="535" r_length="438" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E447317" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52149" e_stop="52239"/>
          <exon e_start="53119" e_stop="53556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTC-T--C-C-G--GTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCAT</genome_strand>
        <mrna_strand>TATTGAGGTAGTAGGTAGCATCTA-TCTCTTTTAGGGTTCCATCGCCCACACACACTCTTCACTCTGGGGTAGATCTCCAAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCACATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAGGTTTTATTGAGTTCTCAACTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739065" ref_strand="+" ref_description="SGN-E739065 [LC16AA07]">
      <seq>cttatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggtttcaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctangcggtaatgcaccttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51873" stop="54248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52172" g_stop="52239" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53948" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="898" r_length="830" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E739065" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52172" e_stop="52239"/>
          <exon e_start="53119" e_stop="53948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATC</genome_strand>
        <mrna_strand>CTTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTTCACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTANGCGGTAATGCACCTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328850" ref_strand="+" ref_description="SGN-E328850 [cTOC-24-M21]">
      <seq>tatcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatgggattttcccttggctatgattaccccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccatttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51874" stop="54055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52174" g_stop="52239" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53755" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="704" r_length="638" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E328850" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52174" e_stop="52239"/>
          <exon e_start="53119" e_stop="53755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTA-CCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGC</genome_strand>
        <mrna_strand>TATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGGATTTTCCCTTGGCTATGATTACCCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272807" ref_strand="+" ref_description="SGN-E272807 [cLEM-21-P20]">
      <seq>tcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51876" stop="53861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52176" g_stop="52239" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53561" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="622" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E272807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52176" e_stop="52239"/>
          <exon e_start="53004" e_stop="53561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCA</genome_strand>
        <mrna_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272540" ref_strand="+" ref_description="SGN-E272540 [cLEM-21-C24]">
      <seq>tcttttagggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51876" stop="53806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52176" g_stop="52239" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53506" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="567" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E272540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52176" e_stop="52239"/>
          <exon e_start="53004" e_stop="53506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTAT</genome_strand>
        <mrna_strand>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698982" ref_strand="+" ref_description="SGN-E698982 [FA08AG10]">
      <seq>cttttaggttccatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggctatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51877" stop="53981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52177" g_stop="52239" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53681" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="740" r_length="678" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E698982" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52177" e_stop="52239"/>
          <exon e_start="53004" e_stop="53681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGT</genome_strand>
        <mrna_strand>CTTTTA-GGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGCTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365579" ref_strand="+" ref_description="SGN-E365579 [cLPT-12-L16]">
      <seq>ttttagggttccattgctcacacacactctccggtagatctcccagattcttcgacggaaaaggtcctgtgccactgatgacgacagacacacaaagtgttgctgctaagctgagcagctttggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagactaaccatgcaatatcttctgcctatgatgcatttagttcatggagcggacttactgccgctgaaaggagcacatatttaaggaagtggtgctatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51878" stop="53795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52178" g_stop="52239" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53495" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="440" r_length="377" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E365579" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52178" e_stop="52239"/>
          <exon e_start="53119" e_stop="53495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCA-ATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGG</genome_strand>
        <mrna_strand>TTTTAGGGTTCCATTGCTCACACACACTCTCCGGTAGATCTCCCAGATTCTTCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCCACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTTTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACTAACCATGCAATATCTTCTGCCTATGATGCATTTAGTTCATGGAGCGGACTTACTGCCGCTGAAAGGAGCACATATTTAAGGAAGTGGTGCTATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313653" ref_strand="+" ref_description="SGN-E313653 [cTOA-12-N13]">
      <seq>ttttagggtttcatcgctcacgcacactctccggtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggttataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51878" stop="53720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52178" g_stop="52239" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53420" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="479" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E313653" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52178" e_stop="52239"/>
          <exon e_start="53004" e_stop="53420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAA</genome_strand>
        <mrna_strand>TTTTAGGGTTTCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTTATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454696" ref_strand="+" ref_description="SGN-E454696 [cSTS-24-I5]">
      <seq>ccatcgctcacacacactctcttcactctccggtagatctccaaattctccgacgaaaaaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagaactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagacgaatgatgcaatttcttctgcctatgatgcatttagctcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattacgccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaaataccaccgggcgtagtgaatgttgatatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaatacattcacaggttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51902" stop="54162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52239" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="61" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53862" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="806" r_length="745" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E454696" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52239"/>
          <exon e_start="53119" e_stop="53862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAG-ACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGG-AATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAA</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGAACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAAATACCACCGGGCGTAGTGAATGTTGATATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAA-TACATTCACAGGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478758" ref_strand="+" ref_description="SGN-E478758 [cSTD-6-L12]">
      <seq>cttttagggttccatcgctcacacacactctcttcactctccggtagatctccaaattctccgacgaaaaaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagacgaatgatgcaatttcttctgcctatgatgcatttagctcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttggtggtgcaattacgccatggaattttcccttggctatgattacccgaaagggttgccctgctcttgcttgtggttggacagggggtggataaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51877" stop="54137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52239" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="72" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53834" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="788" r_length="716" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E478758" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52239"/>
          <exon e_start="53119" e_stop="53834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACA-GTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAG</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGAAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGGTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGGTTGCCCTGCTCTTGCTTGTGGTTGGACAGGGGGTGGATAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACC-CCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E592048" ref_strand="+" ref_description="SGN-E592048 [45773]">
      <seq>ctcacacacactcttcactctccggtagatctccaaattctccgacggaaaaggtcctgtgcgactgatgacgacagccacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51902" stop="54055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52239" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="53" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53755" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="690" r_length="637" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E592048" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52239"/>
          <exon e_start="53119" e_stop="53755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGC</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGCCACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443018" ref_strand="+" ref_description="SGN-E443018 [cSTA-35-L4]">
      <seq>cttttagggttccatcgcccacacacactcttcactctccggtagatctccaaattctccgacggaaaaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaggttttattgagttctcagctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggctatttgttttaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51877" stop="53892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52239" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="70" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53119" g_stop="53592" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="544" r_length="474" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E443018" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52239"/>
          <exon e_start="53119" e_stop="53592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGC</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGGAAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAGGTTTTATTGAGTTCTCAGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGCTATTTGTTTTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590922" ref_strand="+" ref_description="SGN-E590922 [44528]">
      <seq>ctcttttagggttccatcgctcacacactctcttcactctccggtagatctccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51876" stop="53821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52203" g_stop="52239" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="72" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53521" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="590" r_length="518" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E590922" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52203" e_stop="52239"/>
          <exon e_start="53004" e_stop="53521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGA</genome_strand>
        <mrna_strand>ACTCTCCGGTAGATCTCCAAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548853" ref_strand="+" ref_description="SGN-E548853 [TUS-65-A10]">
      <seq>gtagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcagatatttaaggaagtggtacgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggaaggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttattttgtttaaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51911" stop="53895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52211" g_stop="52239" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53595" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="621" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E548853" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52211" e_stop="52239"/>
          <exon e_start="53004" e_stop="53595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAAC</genome_strand>
        <mrna_strand>GTAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAAGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTTGTTTAAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303144" ref_strand="+" ref_description="SGN-E303144 [cLEX-5-D17]">
      <seq>tagatctcccaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgctctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtccagtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="51912" stop="53661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52212" g_stop="52239" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53004" g_stop="53361" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="386" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E303144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52212" e_stop="52239"/>
          <exon e_start="53004" e_stop="53361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCTCCCAATTCTCCGACGGAAAAGGTGAGTACTTTCTATTCGTATTTTCATTGTATATAAACTGAATATTCATTGTTGTAAAAGTTGAATTTTGTGTTTGTGTTTGAGAATTTCACTCATCGTTGCATTTTGAAATTTAGTTTAGGTAATTTATGGGTTGATTTCACATTTGGGTCACTAAACTGTTGGAAAATTGACTTTCTGATGAGTTAATGTAAATGCTTATGATTCAGTATTAGGAGAAAACCGAAGCAAAAGAAATTGGAAGTATATGCTTTAGGTGAAACGTATATCTATGTCTGTAGAGAAGGTGAGAAGAGACGGAGTGTAATTGATCGAATTCGCGACATTATTATGAGGAACCGCGTTATTTTGTAGCTTGTGAACTAAGTCAATCCGAACAGGCTCTAAATTATAGTTAAGTGAGTGATTTTAATGATACAATAAATAGTTTTGTGATTATTTTGATGTATAATGTGTAAACTTTAGTGACTATGTGTGGAATTAACTCCAGTAATTTGTTTTACCCTCGTGTATGATATACTTTTGGCATTGGATTTATATATGATGAGTGTATTGTTTTGTTCTGAGTATTGGTTGAGGAGCTGGATTTGTGTATGTTGATGGATATTTTGATTCGAACCTGTAATAGTCTGGTGAATTTACAACTCTATTGATTGCTGTCTCCCTGTTTTTTGAATTTTGAAAAAGAAAGCATAGAAGTGGGACGAGTGATATGAATTTGTTAAAACATCTTTTCTTCTTTTTTTTCCGTTTAATTTTCTCAGTTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTA</genome_strand>
        <mrna_strand>TAGATCTCCCAATTCTCCGACGGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445007" ref_strand="+" ref_description="SGN-E445007 [cSTA-44-O10]">
      <seq>tccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaggttttattgagttctcagctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggctatttgttttaaagcaccagttgggtgttgttggtgcaattactccgtggaattttcccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53639" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="658" r_length="636" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E445007" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTT-GGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTG</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAGGTTTTATTGAGTTCTCAGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGCTATTTGTTTTAAAGC-ACCAGTTGGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417164" ref_strand="+" ref_description="SGN-E417164 [STM-24-L6]">
      <seq>tccgacggaaaaggttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53608" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="618" r_length="605" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E417164" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGT</genome_strand>
        <mrna_strand>GTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444522" ref_strand="+" ref_description="SGN-E444522 [cSTA-43-A4]">
      <seq>tccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggcaagttttattgagttctcagctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53571" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="590" r_length="568" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E444522" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCAAGTTTTATTGAGTTCTCAGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474442" ref_strand="+" ref_description="SGN-E474442 [cSTB-36-F11]">
      <seq>ccaaattctccgactaaaaagtttattcatttggatgcttgaagttggaattggggtgccctgatgcaaatgattcgtgtgcgtaccaaaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcatctctggattgctgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagaccaatgatgcaatttcttctgcctatgatgcatttagcttatggagcaaacttactgccgatgaaaggagcaaatatttaaggaagtggtgtgatttcgataatggcccataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53419" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="438" r_length="417" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E474442" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTT-GATAATGGCCCATAA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTGGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAAAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCATCTCTGGATTGCTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACCAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTTATGGAGCAAACTTACTGCCGATGAAAGGAGCAAATATTTAAGGAAGTGGTGTGATTTCGATAATGGCCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445718" ref_strand="+" ref_description="SGN-E445718 [cSTA-18-E20]">
      <seq>tccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53406" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="416" r_length="403" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E445718" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414769" ref_strand="+" ref_description="SGN-E414769 [STM-20-I17]">
      <seq>ccaaattctccgacgaaaaagtttattcatttggatgcttgaagttggaatttgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacggatgttccatgcatgggagggagggagacgaatgatgcaatttcttctgcctatgatgcatttagctcatggagcaaacnnttactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53366" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="386" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E414769" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAAC--TTACTGCC</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTTGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACGGATGTTCCATGCATGGGAGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACNNTTACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445008" ref_strand="+" ref_description="SGN-E445008 [cSTA-44-O10]">
      <seq>tccaaattctccgacggaaaagtttattcatttggatgcttgaagttggaattcgggtgccctgatgcaaatgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttatatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtgttgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52702" stop="53545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53004" g_stop="53245" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="264" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E445008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53004" e_stop="53245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAA</genome_strand>
        <mrna_strand>TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCCCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474444" ref_strand="+" ref_description="SGN-E474444 [cSTB-36-F17]">
      <seq>cctgatgcacatgattcccgtgcgtaccataatggctctttctgcttgtgcgatgttacataggtcctcaattacaagtcctgtgccactgatgacgacagacacacaaagtattgctgataagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggatggtgcatatgatgggaagactataaaggtgcacaatcctgcaacaggggaggtgataacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52743" stop="53580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53042" g_stop="53280" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E474444" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53042" e_stop="53280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAG</genome_strand>
        <mrna_strand>CCTGATGCACATGATTCCCGTGCGTACCATAATGGCTCTTTCTGCTTGTGCGATGTTACATAGGTCCTCAATTACAAGTCCTGTGCCACTGATGACGACAGACACACAAAGTATTGCTGATAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGATGGTGCATATGATGGGAAGACTATAAAGGTGCACAATCCTGCAACAGGGGAGGTGATAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561323" ref_strand="+" ref_description="SGN-E561323 [17296]">
      <seq>tgattcgtgtgcgtaccagaatggctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagccacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggcctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52753" stop="53971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53053" g_stop="53671" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E561323" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53053" e_stop="53671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCT</genome_strand>
        <mrna_strand>TGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGCCACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGG-CCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454224" ref_strand="+" ref_description="SGN-E454224 [cSTS-22-H11]">
      <seq>gctctttctgcttgtgcgatgttacatcgttcctcaatttcaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaaagtggccctgctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52776" stop="53956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53076" g_stop="53674" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E454224" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53076" e_stop="53674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGC</genome_strand>
        <mrna_strand>GCTCTTTCTGCTTGTGCGATGTTACATCGTTCCTCAATTTCAGGTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAAGTGGCCCTGCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449381" ref_strand="+" ref_description="SGN-E449381 [cSTS-6-E18]">
      <seq>ctccgacggaaaaggtcctgtgcgactgatgacgacagacacacaaagtattgctgctaagctgagcagctctggattgttgcggagtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacaaatgtgccatgcatgggagggagggagacgaacgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52817" stop="54054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53119" g_stop="53754" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="650" r_length="636" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E449381" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53119" e_stop="53754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAG</genome_strand>
        <mrna_strand>GTCCTGTGCGACTGATGACGACAGACACACAAAGTATTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAAATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542576" ref_strand="-" ref_description="SGN-E542576 [TUS-63-P7]">
      <seq>tcaagagacacctttttagcggtggcagcagcacattccatcaattttttcccaaccttggttgaacctgtgaatgtaatttttcttacgtgtgggcttgcaagcagtgcgtctccaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaagggtgtgagttcagacggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtaatcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacactttgtgtgtctgtcgtcatcagtcgcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="54223" stop="52821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53923" g_stop="53621" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53345" i_length="276">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53344" g_stop="53121" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="527" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E542576" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542576" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53923" e_stop="53621"/>
          <exon e_start="53344" e_stop="53121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</genome_strand>
        <mrna_strand>TCAAGAGACACCTTTTTAGCGGTGGCAGCAGCACATTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACGTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542569" ref_strand="-" ref_description="SGN-E542569 [TUS-63-P3]">
      <seq>atttttcttagccgcgggcttgcaagcagtaagtctccaaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaaggagtgtgagttccgccggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtagtcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacacttcgtgtgtctgtcgtcatcagtcgcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="54145" stop="52821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53845" g_stop="53621" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53345" i_length="276">
            <donor d_prob="0.729" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53344" g_stop="53121" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="451" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E542569" ref_strand="-">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542569" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53845" e_stop="53621"/>
          <exon e_start="53344" e_stop="53121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCC-AATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGG-GTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</genome_strand>
        <mrna_strand>ATTTTTCTTAGCCGCGGGCTTGCAAGCAGTAAGTCTCCAAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGAGTGTGAGTTCCGCCGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAGTCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTCGTGTGTCTGTCGTCATCAGTCGCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301175" ref_strand="-" ref_description="SGN-E301175 [cLEW-22-H3]">
      <seq>taaagctacttcaagatctgcgtcatcaaagatgatgcaaggtgcattaccgcctagctcaagagacacctttttaacggtggcagcagcaccttccatcaattttttcccaaccttggttgaacctgtgaatgtaatttttcttacctgtgggcttgcaagcagtgcgtctccaatatcaggtgcatttcccataacaacattcactacgcccggtggtattccagcttgaatggagagttcagctgctgctaaagcagtcaagggtgtgagttcagacggtttaatcaccactgtgcaaccacaagcaagagcagggccaacctttcgggtaatcatagccaagggaaaattccatgaactaaatgcatcataggcagaagaaattgcatcgttcgtctccctccctcccatgcatggcacatctgttattacctcccctgttgcaggattgtggacctttatagtcttcccatcatatgcatcaacccatttccctccaataagagcctgactccgcaacaatccagagctgctcagcttagcagcaacactttgtgtgtctgtcgtcatcagtcgcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="54281" stop="52822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53981" g_stop="53621" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53620" i_stop="53345" i_length="276">
            <donor d_prob="0.729" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53344" g_stop="53122" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="584" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E301175" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="53981" e_stop="53621"/>
          <exon e_start="53344" e_stop="53122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGGGTAATTGCACCAACAACACCAACTGGTTGCTTTAAAACAAATAACCGCCTATCTGCTAATGGTGATGGAATGATGTCACCATATATACGTTTACCCTCCTCAGCGGAGAACTCAATAAAACCAGCCCCATAACTAACTTCACCAATAGCCTCTTTTAGAGGTTTCCCTTGCTCTAGTGTCATAAGCTGTCCAAGTTCTTCTTTATGGGCCATTATCAAATCGTACCACTTCCTTAAATATCTGCTCCTTTCAGCGGCAGTAAGTTTGCTCCATGAACTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTG</genome_strand>
        <mrna_strand>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGAA....................................................................................................................................................................................................................................................................................CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591981" ref_strand="+" ref_description="SGN-E591981 [45704]">
      <seq>gcggagtcaggctcttattcgagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggccctggctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52886" stop="54136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53186" g_stop="53834" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E591981" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53186" e_stop="53834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCT-GCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAG</genome_strand>
        <mrna_strand>GCGGAGTCAGGCTCTTATTCGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480588" ref_strand="+" ref_description="SGN-E480588 [cSTD-14-B21]">
      <seq>gtcaggctcttattggagggaaatgggttgatgcatatgatgggaagactataaaggtccacaatcctgcaacaggggaggtaataacagatgtgccatgcatgggcgggagggagacgaatgatgcaatttcttctgcctatgatgcatttagttcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaagcctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaattttcccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="52891" stop="54102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53191" g_stop="53803" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E480588" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53191" e_stop="53803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGA</genome_strand>
        <mrna_strand>GTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGCGGGAGGGAGACGAATGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAGCCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTTCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463210" ref_strand="+" ref_description="SGN-E463210 [cPRO-13-N18]">
      <seq>tcttctgcctatgatgcatttagctcatggagcaaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattacgccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaagttccgtaacaccggacaaacatgtgtatgcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53022" stop="54335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53322" g_stop="54035" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="713" r_length="713" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E463210" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53322" e_stop="54035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCG</genome_strand>
        <mrna_strand>TCTTCTGCCTATGATGCATTTAGCTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAAC-AAGTTCCGTAACACCGGACAAACATGTGTATGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457944" ref_strand="+" ref_description="SGN-E457944 [cPRO-4-O9]">
      <seq>aaacttactgccgctgaaaggagcaaatatttaaggaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacactagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgatnaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatggtgttatgggaaatgcacctgctattggagacgcactgcttgncagcccacaggtaagaaaattacattcacaggttcaaccaaggttgggaaaaaatgatggaagtgctgctgccaccgttaaaaagtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaggagctctggcgancaagtccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaatttcgcaatgcttttgcaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53055" stop="54397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53355" g_stop="54097" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E457944" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53355" e_stop="54097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGT</genome_strand>
        <mrna_strand>AAACTTACTGCCGCTGAAAGGAGCAAATATTTAAGGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATNAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGGTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGNCAGCCCACAGGTAAG-AAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAA-TGATGGAA-GTGCTGCTGCCACCGTTAAAAA-GTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTT-AAAGGAGCTCTGGCGANCAAG-TCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTTCGCAATGCTTTTGC-AAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474824" ref_strand="+" ref_description="SGN-E474824 [cSTB-38-G17]">
      <seq>gctgaaaggagcaaatatttaaagaagtggtatgatttgataatggcccataaagaagaacttggacagcttatgacacttgagcaagggaaacctctgaaagatgccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaagcgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattactccgtggaatttccccctggctatgattacccgaaaagttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaagttcaaccaaagttgggaaaaaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53067" stop="54185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53367" g_stop="53885" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E474824" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53367" e_stop="53885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATG</genome_strand>
        <mrna_strand>GCTGAAAGGAGCAAATATTTAAAGAAGTGGTATGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTTGAGCAAGGGAAACCTCTGAAAGATGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAGCGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACTCCGTGGAATTTCCCCCTGGCTATGATTACCCGAAAAGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAAGTTCAACCAAAGTTGGGAAAAAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701355" ref_strand="+" ref_description="SGN-E701355 [FA15DA01]">
      <seq>aagaagaacttggacagcttatgacactagagcaagggaaacctctaaaagaggctattggtgaagttagttatggggctggttttattgagttctccgctgaggagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaaaggagccaaagtccttgttggtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53119" stop="54532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53419" g_stop="54232" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E701355" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53419" e_stop="54232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGG</genome_strand>
        <mrna_strand>AAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAAGGAGCCAAAGTCCTTGTTGGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456756" ref_strand="+" ref_description="SGN-E456756 [cSTS-30-O8]">
      <seq>ctagagcaagggaaacctctgaaagaggccattggtgaagttagttatggggctggttttattgagttctccgctgaagagggtaaacgtatatatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattacgccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53145" stop="54298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53445" g_stop="53998" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E456756" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53445" e_stop="53998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAAC</genome_strand>
        <mrna_strand>CTAGAGCAAGGGAAACCTCTGAAAGAGGCCATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAAGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACGCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGTACAGTGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706150" ref_strand="+" ref_description="SGN-E706150 [FA29AF05]">
      <seq>atatggtgacatcattccatcaccattagcagataggcggttatttgttttaaagcaaccagttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53237" stop="54770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53537" g_stop="53867" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53868" i_stop="53940" i_length="73">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53941" g_stop="54470" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="861" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E706150" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53537" e_stop="53867"/>
          <exon e_start="53941" e_stop="54470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</genome_strand>
        <mrna_strand>ATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAG.........................................................................GTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706826" ref_strand="+" ref_description="SGN-E706826 [FA31AB09]">
      <seq>gttggtgttgttggtgcaattaccccatggaattttcccttggctatgattacccgaaaggttggccctgctcttgcttgtggttgcacagtggtgattaaaccgtctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggcccatcgcccctcttttgaagttcaaaacagacgaagaaccaatccaaatggctaacgacactaatgctgggtttacctgcttatatattctcaacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53298" stop="54725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53598" g_stop="54425" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E706826" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53598" e_stop="54425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCT-GGTTTAGCTGCTTATATATTCTCAACAAAC</genome_strand>
        <mrna_strand>GTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCCATCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAACCAATCCAAATGGCTAACGACACTAATGCTGGGTTTACCTGCTTATATATTCTCAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690239" ref_strand="+" ref_description="SGN-E690239 [LH_Ea02P21]">
      <seq>cgtttgctcttgcttgtggttgcacagtggtgattaaaccttctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccggtgcgtattgaatgttgtcatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcacaaatgcttttgcgaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatcttttgtagaagaagctacatctaagggagccaaagtcctcgttggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagaccaataagcaatccaaatggctaacgacaccaatgctggtttagctgcttatatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53366" stop="54717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53662" g_stop="54417" g_length="756"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E690239" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53662" e_stop="54417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGG-GCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCT</genome_strand>
        <mrna_strand>CGTTTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCTTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGTGCGTATTGAATGTTGTCATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCACAAATGCTTTTGCGAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATCTTTTGTAGAAGAAGCTACATCTAAGGGAGCCAAAGTCCTCGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACCAATAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTATATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557605" ref_strand="+" ref_description="SGN-E557605 [16429]">
      <seq>cccgggctgcaggatccggcacgagggttgtacagtggtgataaaaccatctgaactcacacccttgactgctttacagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaagttgaatcttttgtagaagaagctacttcgaagggagccaaagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53379" stop="54521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53689" g_stop="54222" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="567" r_length="532" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E557605" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53689" e_stop="54222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCC</genome_strand>
        <mrna_strand>TGGTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTA-CAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAA-GTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450615" ref_strand="+" ref_description="SGN-E450615 [cSTS-9-J22]">
      <seq>gtgataaaaccatctgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatcttttgtagaagaagctacttcgaagggagccaaagtcctcattggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgagatgctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53391" stop="54606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53691" g_stop="54306" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E450615" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53691" e_stop="54306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGG</genome_strand>
        <mrna_strand>GTGATAAAACCATCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCCTCATTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583349" ref_strand="+" ref_description="SGN-E583349 [9170]">
      <seq>tgaactcacacccttgactgctttagcagcagctgaactctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgctattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccactgttaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagcaaggttgaatcttttgtagaagaagctacttcgaagggagccaaagtcctcattggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53405" stop="54596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53705" g_stop="54296" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E583349" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53705" e_stop="54296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAG-AAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAG</genome_strand>
        <mrna_strand>TGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGCTATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACTGTTAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGCAAGGTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCCTCATTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710227" ref_strand="+" ref_description="SGN-E710227 [FA54CH06]">
      <seq>cgatctctccattcaagctggaataccaccgggcgtagtgaatgttgttatgggaaatgcacctgatattggagacgcactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaataccggatggatgaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53439" stop="54876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53738" g_stop="54576" g_length="839"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E710227" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53738" e_stop="54576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATT</genome_strand>
        <mrna_strand>CGATCTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACCGGATGGATGAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439926" ref_strand="+" ref_description="SGN-E439926 [cSTA-14-K15]">
      <seq>cactgcttgcaagcccacaggtaagaaaaattacattcacaggttcaaccaaggttgggaaaaaattgatggaaggtgctgctgccaccgttaaaaaggtgtctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctcgcaacaaagttccgtaacaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53515" stop="54731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53815" g_stop="54431" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E439926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53815" e_stop="54431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAA</genome_strand>
        <mrna_strand>CACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451796" ref_strand="+" ref_description="SGN-E451796 [cSTS-14-A22]">
      <seq>ggttgggaaaaaattgatggaaggtgctgctgccaccgtcaaaaaggtatctcttgagctaggcggtaatgcaccttgcatcatctttgatgacgcagatcttgaagtagctttaaaaggagctctggcaacaaagttccgtaacaccggacaaacatgtgtatgcgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaaggttgagtcttttgtagaagaagctacttcaaagggagccaaagtcctcgttggtgggaagagacacagccttggcatgactttctacgagcctacagtcgtaactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacaccaatgctggtttagctgcttacatattctcaacaaacattaaaagagcttggcgtgttactgaagctctcgaaatggaattgtcggagttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53567" stop="54783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53867" g_stop="54483" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E451796" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53867" e_stop="54483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATG</genome_strand>
        <mrna_strand>GGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTCAAAAAGGTATCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTGGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGCGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAGTCTTTTGTAGAAGAAGCTACTTCAAAGGGAGCCAAAGTCCTCGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTACATATTCTCAACAAACATTAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAA-ATGGAATTGTCGGAGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542567" ref_strand="+" ref_description="SGN-E542567 [TUS-63-P3](-)">
      <seq>gtagcttaaaaggagctctcgcaacaaagttccgtaccaccggacaaacatgtgtatgtgcgaacagaatacttgtgcaagaagggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53673" stop="55016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53973" g_stop="54712" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="753"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E542567" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53973" e_stop="54712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>GTAGC-TTAAAAGGAGCTCTCGCAACAAAGTTCCGTACCACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E590209" ref_strand="+" ref_description="SGN-E590209 [43800]">
      <seq>attcataaagacgtgaaaactgcattaaacccaaaatgagactggcaccattgtgtctcttattagtgagaaaaaaaaattacataggtgatttagctcatacttcccaagcacacatatttcatctctaaatattcatccatcccgtatttagaaccttcgcggccaagacctgattgtttcacgcctccgaatggagctacctcggttgaaactagtccttcattaactccgacaattccatattcgagagcttcagtaacacgccaagctcttttaatgtttgttgagaatatgtaagcagctaaaccagcattggtgtcgttagccatttggattgcttcttcgtctgttttgaacttcaaaagaggggcgactggcccaaatacttcctctttcgccaagagcatctcactgttaactccagttacgactgtaggctcgtagaaagtcatgccaaggctgtgtctcttcccaccaacgaggactttggctccctttgaagtagcttcttctacaaaagactcaaccttctgtactgctgcttcattgattagagggccttggctccacaccttcaggtgaaaccatctccaactttcatgttttggacagcttttgcaaaagcatttgcgaatttatcatatatcccttcttgcacaagtattctgttcgcgcatacacatgtttgtccggtgttacggaactttgttgccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="55009" stop="53689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54709" g_stop="53989" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E590209" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E590209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54709" e_stop="53989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAGCATCTCACTGTTAACTCCAGTAACAACTGTAGGCTCGTAGAAAGTCATGCCAAGGCTGTGTCTCTTCCCACCAACAAGGACTTTGGCTCCCTTTGAAGTAGCTTCATCCACAAAATATTCAACCTTCTGTACTGCTGCTTCATTGATTAGAGGGCCTT-GCTCTACACCTTCA-GTGAAACCATCTCCAACTTTCATGTTTTGGACAGCTTTAGCAAAAGCATTTGCGAATTTATCATATATCCCTTCTTGCACAAGTATTCTGTTCGCACATACACATGTTTGTCCGGTGTTACGGAACTTTGTTGCGAGAG</genome_strand>
        <mrna_strand>ATTCATAAAGACGTG-AAAACTGCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTAGTGAGAAA--AAAAAATTACATAGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACGCCTCCGAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTAATGTTTGTTGAGAATATGTAAGCAGCTAAACCAGCATTGGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAGCATCTCACTGTTAACTCCAGTTACGACTGTAGGCTCGTAGAAAGTCATGCCAAGGCTGTGTCTCTTCCCACCAACGAGGACTTTGGCTCCCTTTGAAGTAGCTTCTTCTACAAAAGACTCAACCTTCTGTACTGCTGCTTCATTGATTAGAGGGCCTTGGCTCCACACCTTCAGGTGAAACCATCTCCAACTTTCATGTTTTGGACAGCTTTTGCAAAAGCATTTGCGAATTTATCATATATCCCTTCTTGCACAAGTATTCTGTTCGCGCATACACATGTTTGTCCGGTGTTACGGAACTTTGTTGCCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414770" ref_strand="-" ref_description="SGN-E414770 [STM-20-I17]">
      <seq>gtgcaagaagggatatatgataaattcgcaaatgcttttgcaaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtggagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatcttttgtagaagaagctacttcgaagggagccaaagtcctcattggtgggaagagacacagccttggcatgactttttacgagcctacagtcgtaactggagttaacagtgagatgctattggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacaccaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccattcggaggcgtgaaacaatcaggttttggccgcgaaggttttaaatacgggatggatgaatatttagagatgaaatatgtgtgcttggggagtatgagctaaatcccctgtgtaatttttttttttctcactaataagggacacaatggtgccagtctcattttgggtttaatgcagttttcacgtctttatgaatgaacacatttttagtgtctttattgcctctcttctttacaaaaaaaaaaaaaaaaaaaaaaaaaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53748" stop="55049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54048" g_stop="54748" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="702" polyA_stop="727"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E414770" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414770" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54048" e_stop="54748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACA-TTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</genome_strand>
        <mrna_strand>GTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCAAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTGGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATCTTTTGTAGAAGAAGCTACTTCGAAGGGAGCCAAAGTCCTCATTGGTGGGAAGAGACACAGCCTTGGCATGACTTTTTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTATTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTCGGAGGCGTGAAACAATCAGGTTTTGGCCGCGAAGGTTTTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGGAGTATGAGCTAAATCCCCTGTGTAATTTTTTTTTTTCTCACTAATAAGGGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGCAG-TTTTCACGTCTTTATGAATGAACACATTTTTAGTGTCTTTATTGCCTCTCTTCTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555773" ref_strand="-" ref_description="SGN-E555773 [cTSD-1-F6]">
      <seq>gaagggatatatgataaatttgcaaatgcttttgctaaagctgtccaaaacctgaaagttggggatggtttccctgaaggtgtagagcaaggcccttttatcaatgaagcagccgtacagaaggttgaatattttgtgggtgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgacttttttcgagcctacagttgtttctggagttaaccgtgagatgcttttggcgaaagaggaagtatttgggcccgtcgccccttttttgaagttcaaaaccggcgaagaagcaatccaaatggctaacggccctaatgctggtttagctgcttatatattttcaacaaacatcaaaagagcttggggtgttactgaagctcttgaatatggaattgttggagttaatgaagggctagtttcaaccggggtagctccctttgggggtgtgaaacaatcaggttttggccgcgaaggttttaaatacgggatgggtgaatttttagggatgaaatatgtgtgcttgggaagtatgagctaaatcccccctgtaaaaaaaaaatttttcaataataagagacccaatggtgcccgtctcattttgggtttaatgaagtttttcacgtctttatgaatgaacccattttagtgttttataaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53754" stop="55031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54054" g_stop="54723" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="696"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E555773" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555773" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54054" e_stop="54723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGT</genome_strand>
        <mrna_strand>GAAGGGATATATGATAAATTTGCAAATGCTTTTGCTAAAGCTGTCCAAAACCTGAAAGTTGGGGATGGTTTCCCTGAAGGTGTAGAGCAAGGCCCTTTTATCAATGAAGCAGCCGTACAGAAGGTTGAATATTTTGTGGGTGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTTTTCGAGCCTACAGTTGTTTCTGGAGTTAACCGTGAGATGCTTTTGGCGAAAGAGGAAGTATTTGGGCCCGTCGCCCCTTTTTTGAAGTTCAAAACCGGCGAAGAAGCAATCCAAATGGCTAACGGCCCTAATGCTGGTTTAGCTGCTTATATATTTTCAACAAACATCAAAAGAGCTTGGGGTGTTACTGAAGCTCTTGAATATGGAATTGTTGGAGTTAATGAAGGGCTAGTTTCAACCGGGGTAGCTCCCTTTGGGGGTGTGAAACAATCAGGTTTTGGCCGCGAAGGTTTTAAATACGGGATGGGTGAATTTTTAGGGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCCCCCCTGTAAAAAAAAAATTTTTCAATAATAAGAGACCCAATGGTGCCCGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACCCATTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716168" ref_strand="+" ref_description="SGN-E716168 [FB16BC01]">
      <seq>gggatatatgataaattcgcaaatgcttttgctaaagctgtccaaaacatgaaagttggagatggtttcactgaaggtgtagagcaaggccctctaatcaatgaagcagcagtacagaaggttgaatattttgtggatgaagctacttcaaagggagccaaagtccttgttggtgggaagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53757" stop="54988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54057" g_stop="54678" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="643"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E716168" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54057" e_stop="54678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGG</genome_strand>
        <mrna_strand>GGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542574" ref_strand="+" ref_description="SGN-E542574 [TUS-63-P7](-)">
      <seq>tgggaagagacacagccttggcatgactttttacgagcctaccagtttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53930" stop="55010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54230" g_stop="54710" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E542574" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54230" e_stop="54710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTA-CAG-TTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATG</genome_strand>
        <mrna_strand>TGGGAAGAGACACAGCCTTGGCATGACTTTTTACGAGCCTACCAGTTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266340" ref_strand="-" ref_description="SGN-E266340 [cLEI-3-E21]">
      <seq>aagagacacagccttggcatgactttctacgagcctacagttgttactggagttaacagtgatatgctcttggcgaaagagaaagtatttgggccagtagcccctcttttgaagttcaaaacagacgaagaagcaatcccaatggctaacgacactaatgctggtttagcaggttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtaggtccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttgtaaattcgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatctcccctgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagttcctcacgtctttatgaatgcacacattttagtgaaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53934" stop="55024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54234" g_stop="54723" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="512"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E266340" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266340" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54234" e_stop="54723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGT</genome_strand>
        <mrna_strand>AAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGATATGCTCTTGGCGAAAGAGAAAGTATTTGGGCCAGTAGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCCAATGGCTAACGACACTAATGCTGGTTTAGCAGGTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGGTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTGTAAATTCGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCTCCCCTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTCCTCACGTCTTTATGAATGCACACATTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219562" ref_strand="+" ref_description="SGN-E219562 [cLEL-11-I16](-)">
      <seq>gcatgactttctacgagcctacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53950" stop="55016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54250" g_stop="54715" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="467" polyA_stop="481"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E219562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54250" e_stop="54715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACAC</genome_strand>
        <mrna_strand>GCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587396" ref_strand="+" ref_description="SGN-E587396 [78512]">
      <seq>ctacgagcctacagtcgtaactggagttaacagtgagatgctattggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacaccaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccattcggaggcgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttggggagtatgagctaaatcacctgtgtaattttttttttctcactaataagggacacaatggtgccagtctcattttgggtttaatgcagttttcacgtctttatgaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53960" stop="55016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54260" g_stop="54712" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="452" polyA_stop="469"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E587396" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54260" e_stop="54712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>CTACGAGCCTACAGTCGTAACTGGAGTTAACAGTGAGATGCTATTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACCAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTCGGAGGCGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGGAGTATGAGCTAAATCACCTGTGT-AATTTTTTTTTTCTCACTAATAAGGGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGCAG-TTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215604" ref_strand="+" ref_description="SGN-E215604 [cLEL-15-G15](-)">
      <seq>tacagttgttactggagttaacagtgagatgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacagacgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcaccactgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgancaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53969" stop="55016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54269" g_stop="54715" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="462"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E215604" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54269" e_stop="54715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACAC</genome_strand>
        <mrna_strand>TACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGANCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226208" ref_strand="+" ref_description="SGN-E226208 [cLEL-31-E4](-)">
      <seq>tgctcttggcgaaagaggaagtatttgggccagtcgcccctcttttgaagttcaaaacaggcgaagaagcaatccaaatggctaacgacactaatgctggtttagctgcttatatattctcaacaaacatcaaaagagcttggcgtgttactgaagctctcgaatatggaattgtcggagttaatgaaggactagtttcaaccgaggtagctccatttgggggtgtgaaacaatcaggtcttggccgcgaaggttctaaatacgggatggatgaatatttagagatgaaatatgtgtgcttgggaagtatgagctaaatcacccctgtaaaaaaaaaatttctcaataataagagacacaatggtgccagtctcattttgggtttaatgaagtttttcacgtctttatgaatgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="53998" stop="55016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54298" g_stop="54712" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="434"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E226208" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54298" e_stop="54712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</genome_strand>
        <mrna_strand>TGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGGCGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCCCTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208535" ref_strand="+" ref_description="SGN-E208535 [cLEC-39-H17]">
      <seq>ttcataaagacgtgaaaaacttcattaaacccaaaatgagactggcaccattgtgtctcttattattgagaaattttttttttacagtggtgatttagctcatacttcccaagcacacatatttcatctctaaatattcatccatcccgtatttagaaccttcgcggccaagacctgattgtttcacacccccaaatggagctacctcggttgaaactagtccttcattaactccgacaattccatattcgagagcttcagtaacacgccaagctcttttgatgtttgttgagaatatataagcagctaaaccagcattagtgtcgttagccatttggattgcttcttcgtctgttttgaacttcaaaagaggggcgactggcccaaattctttctttttcgccaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="55008" stop="54000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54708" g_stop="54300" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E208535" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54708" e_stop="54300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAG</genome_strand>
        <mrna_strand>TTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATTCTTTCTTTTTCGCCAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538153" ref_strand="+" ref_description="SGN-E538153 [TUS-57-C8]">
      <seq>ttagagagggtttttggtggaaatatgttgaagttgcctaaacggaatttgccatggctgcagctgagacgattatcaacggcgattcgacaaactgtagaagatgaaggcgactggttttattcatcggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccaaaccagaaaactgttattgggggaaaacagagaattggcttcaaaagaggtatgaaaagatgtatccaagagatgaacaggaagggaatttcaggattcttggttaccaatggcggaatcttcactttaatgaggagactcgtcaaagcacagttaaaataatggctgcttatagggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggctaccattgcatcttgtagattcgatcttgaaagtgcagtttgtgggagaaaaccaatgaaaattttatgcattgggcatggcggaggaagcataccgttgtttttggctagtaaaatccaaggtgctgaagtgcacatagctgaaatcgaccctgtggtaatctcagcctcagttcaagcaatggggttcccatcttactcagttatgactccatctggtagccgtgcacactcaactcctgatcttatccaagaagttcaatggaaaggcattcatgagaggattncattacatgaatcagatgctgagaaattcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="55117" stop="58116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55417" g_stop="55650" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55651" i_stop="55745" i_length="95">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55746" g_stop="55974" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="463" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55975" i_stop="56507" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56508" g_stop="56660" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="616" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56661" i_stop="57619" i_length="959">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57620" g_stop="57816" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="813" r_length="197" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E538153" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55417" e_stop="55650"/>
          <exon e_start="55746" e_stop="55974"/>
          <exon e_start="56508" e_stop="56660"/>
          <exon e_start="57620" e_stop="57816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAGGTTTGAACTGAGTGCTGTTTTTCCTGCCTTTGCTGCTCTTTAAGTCTCTGAATTTGAGCATTTTTTTGGGTGACATTGTGTATTTGACAAAGTATGAACGGGAAATCATTATCCAATCCTTCTTTTCACTGGATGTGATATTAAAGACACATACTTTCTCCCTTTTATGTAAAATCTTATCTTGAATGTAAATTTTGGGGAGGTAATCTGACATGAGATGATGCAGAAAACTCAAGATTATGTATTTCTTCAACTATAGTTGATATCCTCTGGATGACCTCAAATACAATATTGACTGAATTTCTTTCAAGTTTCTGAGGGAACTTCCATTTTCTCATAGATTATGTACAGGATGTGAGGTCTGCTGGAAGAACAAATAATAAAAATGAGTGTTTTTTTAACTACAGAAATTTCATTACTGTATGCTTGGATCGCTAGGACAAGGGGCTTAAATAATGAAAGATTGTGTGTATCATACCACAAATTCATCCCTGTAGTTCTTGTTTGGTTCACATAGATGTGGTAAATTTGGATATGCTGTTGTTCGTAGTAGTAGAATTTGAAGCACTGCTACTCCAAATATTACAAAGTTCTGAAGCTCACTCTTGGCTTTTTGGATAAAGTTGTAAAATGAACACCTTGGATAGCTTGTATTCTTGCATTGCATATCTCCCAGTCAGTGTTTCCTTACTATCCACTTGGATATATTTACGAATTTCAGTGATAATAGTCATAGTACTTCTGTCCAACATTTTCTCGGAGAAAAGATATGAATATCAGATTACCTAGAATTGGAACTACTTTGTTCTCTGCTTTTTGAATCCCTTCAATGGCATTGCAACTTCAATTTCTAGTTTGACAGACTTGACACTCGTTCCGAAACTAACTGTTGCTTGTCTTAATTTGTTGTACCAATTTGCGAAATGTCTGTTTTGGAATTAACCTCTTCGATGTATCAGGTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTC</genome_strand>
        <mrna_strand>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA...............................................................................................GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTNCATTACATGAATCAGATGCTGAGAAATTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268129" ref_strand="+" ref_description="SGN-E268129 [cLEI-15-C24]">
      <seq>tagagagggtttttggtggaaatatgttgaagttgcctaaacggaatttgccatggctgcagctgagacgattatcaacggcgattcgacaaactgtagaagatgaaggcgactggttttattcatcggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccgaaccagaaaactgttattgtgggaaaacagagaattggcttccaaagaggtatgaaaagatgtatccaagagatgaacatgaagggaatttcaggattcttggttaccaatggcggaatcttcactctaatgaggagactcgtcaaagcacagttaaaataatggctgcttatacggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggcttccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="55118" stop="56847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55418" g_stop="55650" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55651" i_stop="55745" i_length="95">
            <donor d_prob="0.863" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55746" g_stop="55974" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="462" r_length="229" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55975" i_stop="56507" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56508" g_stop="56547" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="502" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E268129" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55418" e_stop="55650"/>
          <exon e_start="55746" e_stop="55974"/>
          <exon e_start="56508" e_stop="56547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGC</genome_strand>
        <mrna_strand>TAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCGAACCA...............................................................................................GAAAACTGTTATTGTGGGAAAACAGAGAATTGGCTTCCAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACATGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTCTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATACGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTTCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203698" ref_strand="+" ref_description="SGN-E203698 [cLEC-15-F10]">
      <seq>cggaatggtggggcacaacttccggtggtggcgacacagttttccgatcaatttccgataaaggaaacggcgtcgtttctgtcgtagcttacccttcttccaaaccagaaaactgttattgggggaaaacagagaattggcttcaaaagaggtatgaaaagatgtatccaagagatgaacaggaagggaatttcaggattcttggttaccaatggcggaatcttcactttaatgaggagactcgtcaaagcacagttaaaataatggctgcttatagggattcagctcctggttctatatacttgatgcagcaggcagagtgtctcgctgttccatatgtgaagagcatggtctctgctgggttggctaccattgcatcttgtagattcgatcttgaaagtgcagtttgtgggagaaaaccaatgaaaattttatgcattgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="55244" stop="56916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55544" g_stop="55650" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55651" i_stop="55745" i_length="95">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55746" g_stop="55974" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="336" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55975" i_stop="56507" i_length="533">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56508" g_stop="56616" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="445" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E203698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55544" e_stop="55650"/>
          <exon e_start="55746" e_stop="55974"/>
          <exon e_start="56508" e_stop="56616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCAGTTCAGTCTTTCTTTCTCTCCCTTCTTTCGATTGAAATGTTGTTGTTTTTGTTATTGGATGTGAATATTTCCTCTAAAAATGTTATTTTTAATAGGAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCATGTATGTATCGCGTTATTTACAGCTCTTATGCAATAGTATGATCATGTAAATGGAATATATGATTCTCTAGGAGTATAGTTCATTACTTGTACATTTAGTGTCTACATTAGAAAAGAAAAACAAGTCATGCTCTAACAATAAACTGGGATGAATGATACTATTGTTGCCTTATTCTTTTCAATAGCTGGTTAATCCTCTTAAAAATGTACTTTTGTTCCTAGTTTTGTATTTGGTTCTTGAGTTGGTTGGTCGTCGTTATCAAGTATTAATTTTGCTGTATTACTATGAACAAGGTCCAGTGTATTTGATAAGAAAAAGATGTGTCGATTTAGTACAGAATTTATGGACGTTGAAGGTCCAATGTAATTTGTTTTACAAGATCCTTTCTGACATGACCTTAGAGTAAATCGTGCTTATACAGTATTTAATTATTGGAAGTTAAGGTATCGTACTTATGCCAGTTCTCCTCAATCATCAATGATGATCATACTTTCACATTTTTAATGCAGCATCTTTTCATGTTTTCTCTACAGATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCA</genome_strand>
        <mrna_strand>CGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA...............................................................................................GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548009" ref_strand="+" ref_description="SGN-E548009 [TUS-57-C8](-)">
      <seq>agttatgactccatctggtagccgtgcacactcaactcctgatcttatccaagaagttcaatggaaaggcattcatgagaggattcaattacatgaatcagatgctgagaaattcctcctcgagaacaaaaatctttatgatcttgttttcatagacgcatatgacggggaagatatctttcctcacaccctatgggatccacactctccattcctcaatgctctcgcagaccaacttcaccctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="57399" stop="58619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57699" g_stop="58319" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="655"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E548009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57699" e_stop="58319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</genome_strand>
        <mrna_strand>AGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236806" ref_strand="+" ref_description="SGN-E236806 [cLEL-7-H1](-)">
      <seq>attcctcaatgctctcgcagaccaacttcaccctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="57609" stop="58619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57909" g_stop="58335" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E236806" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57909" e_stop="58335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</genome_strand>
        <mrna_strand>ATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236944" ref_strand="+" ref_description="SGN-E236944 [cLEL-7-H1](-)">
      <seq>caatgctctcgcagaccaacttcacctgagcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="57615" stop="58619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57915" g_stop="58335" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E236944" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57915" e_stop="58335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</genome_strand>
        <mrna_strand>CAATGCTCTCGCAGACCAACTTCA-CCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236727" ref_strand="+" ref_description="SGN-E236727 [cLEL-7-J17](-)">
      <seq>atgctctcgcagaccaacttcaccctgagcatggaactgttgttgaaaccttcactcagnatgtagacttcagggatcatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaagaagctctattaggcagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggttttactctggttaattaatatgaattaaaagtattttgccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="57617" stop="58619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57917" g_stop="58335" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E236727" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57917" e_stop="58335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAG-ATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</genome_strand>
        <mrna_strand>ATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTTG-AAACCTTCACTCAGNATGTAGACTTCAGGGATCATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGCAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237167" ref_strand="+" ref_description="SGN-E237167 [cLEL-7-J17](-)">
      <seq>agcatggaactgttgtcgtaaaccttcactcagatgtagacttcagggatgatgatttcattccacctggttctcaccttttgccaatgggaaagtatatttcgaaagtgtgccgatcatataaaaaagctctattagggagtaagagttcctataatggtctggcttatgtagtttctgtgccttgggtatgtaatacatctcttgttgtgagcagaggtttagagaaatctaatagagatatggttatgaggaatatcatgtcaaaatccctagttgttgagaatactcttgacttgccattttcttgtatgcaatatctgaaaagaggtttttctctggttaattaatatgaattaaaagtatttccccttcaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="57644" stop="58619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57944" g_stop="58319" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="392"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E237167" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57944" e_stop="58319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCA</genome_strand>
        <mrna_strand>AGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAAAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTTCTCTGGTTAATTAATATGAATTAAAAGTATTTCCCCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="62061" stop="91128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62361" g_stop="62682" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62361" e_stop="62682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAACTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGGAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="62061" stop="62956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62361" g_stop="62665" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62361" e_stop="62665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGA-AAAATTGTATTTCACTGCAACTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGGAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354530" ref_strand="+" ref_description="SGN-E354530 [cTOS-17-O17]">
      <seq>tccaaaaagctcaggttgaatgtggtagctcaatttctggccaaatatttcttcataagtgctttgttagttataattattatccaaatggggctcccacaaaatcatcatcatcatcatcttcatactggtctccatctccttcagcagggacaggccaaaacacagggaaaacagtggctataatactaggaggagcagcaggagttggttttctagtcatttgcatgctctttgcaaggaaccaaatgaagaaacatgatgattattgaagggatcagctgtgtattattattataaaaggctggcaaaagctttttatgaggtggattctttccttgtcaagattttctacctagaaggaaaatatattttcttggaaattcctgaaaaaaagtgagggagtttgtgagctgtaattcttggaattattaggtaaaaagagaaaaacaaaaatactattttggggacataaatttttggagaaatgatgtaacaatacatgttttttttgtcaactatgaagaagattggcaagagcattataatgtttttttggcctttttctcctatggccatgtgcatgttgtatcttttctctttgtctctgaataattgtttcacccttttttttcttcttctaaagttttttactttttaaaaacnaaaaaaaaaaaaaaaaaaaaaagaaaggggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="68059" stop="66027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67759" g_stop="67610" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67609" i_stop="67058" i_length="552">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67057" g_stop="66944" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="264" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66943" i_stop="66726" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66725" g_stop="66327" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="663" r_length="399" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="667" polyA_stop="692"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E354530" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67759" e_stop="67610"/>
          <exon e_start="67057" e_stop="66944"/>
          <exon e_start="66725" e_stop="66327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAGGTACTTTTCCTTGAATTGACTGCTTAGCTAGCGCTTAGTCATAAATTTCAAAAATTAATCTTTGAATATCTGTTTGACCATATATTTTGGATCAGATTTTGAAAATCTGTCTTAAAAAGATTTTCAAGTTCCAAAAACTGCTCCAGACCATATTTGTTTAGTCCTAGTCAAAAAATTCATGCTTAAGCACAAAAAGAGTTTCAGAAACTTAACTTGTCGAGTTTCAACTTCAAAATTTATGATCAAGAGCTAAACATGCTAAGACTGTGACAATGGTTTCTGGTTTGGTTTGCTAGTGTTAACACTCTAATCAAGATTTTGTCTTTCTTAGAACTTTTGAGCTGTCTACCTCATTTAATTAGTTGTATACTTCAATAAAAAATGGATCTTGGAATAAACAAACAAGGAGCATGATAAAATGTGTTTTTTTAAATAATATGTCTCTGTTAACAAGATGTTTGTCTAGCTTAGATTTGTGTGCTCTCATTTCATATTTTTGTTATAAAAAAGTTGTATAGTAATGAGAGTTGTGTATGTTCAATGAATGTGTAGGGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATGGTAAGTGTGAAAAATATATTTTCGATCTCTCGATTATTGGTAAATTATGATTTTGATCCTCGTGATATATGACTCAGACTTGTGTGTCTAACCTTTGGTTAGGACTAGAATTAGAATTTCTCAATAACTGAGGGACTAAAAATATTATGAACTCTAAATTTTTACCATGGTTTAAAATATTGCCACTTGCTTATGTATGATTTAAATATTTGTTGCAGATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTAGAAA</genome_strand>
        <mrna_strand>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG..........................................................................................................................................................................................................................ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219924" ref_strand="+" ref_description="SGN-E219924 [cLEL-24-C12](-)">
      <seq>atttctggccaaatatttcttcataagtgctttgttagttataattattatccaaatggggctcccacaaaatcatcatcatcatcatcttcatactggtctccatctccttcagcagggacaggccaaaacacaagggaaaacagtggctataatactaggaggagcagcaggagttggttttctagtcatttgcatgctctttgcaaggaaccaaatgaagaaacatgatgattattgaagggatcagctgtgtattattattataaaaggctggcaaaagctttttatgaggtggattctttccttgtcaagagtttctacctagaaggaaaatatattttcttggaaattcctgaaaaaaagtgagggagtttgtgagctgtaattcttggaattattgggtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="68027" stop="66234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67727" g_stop="67610" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67609" i_stop="67058" i_length="552">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67057" g_stop="66944" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="233" r_length="115" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66943" i_stop="66726" i_length="218">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66725" g_stop="66535" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="424" r_length="191" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E219924" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67727" e_stop="67610"/>
          <exon e_start="67057" e_stop="66944"/>
          <exon e_start="66725" e_stop="66535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAGGTACTTTTCCTTGAATTGACTGCTTAGCTAGCGCTTAGTCATAAATTTCAAAAATTAATCTTTGAATATCTGTTTGACCATATATTTTGGATCAGATTTTGAAAATCTGTCTTAAAAAGATTTTCAAGTTCCAAAAACTGCTCCAGACCATATTTGTTTAGTCCTAGTCAAAAAATTCATGCTTAAGCACAAAAAGAGTTTCAGAAACTTAACTTGTCGAGTTTCAACTTCAAAATTTATGATCAAGAGCTAAACATGCTAAGACTGTGACAATGGTTTCTGGTTTGGTTTGCTAGTGTTAACACTCTAATCAAGATTTTGTCTTTCTTAGAACTTTTGAGCTGTCTACCTCATTTAATTAGTTGTATACTTCAATAAAAAATGGATCTTGGAATAAACAAACAAGGAGCATGATAAAATGTGTTTTTTTAAATAATATGTCTCTGTTAACAAGATGTTTGTCTAGCTTAGATTTGTGTGCTCTCATTTCATATTTTTGTTATAAAAAAGTTGTATAGTAATGAGAGTTGTGTATGTTCAATGAATGTGTAGGGACAGGCCAAAACAC-AGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATGGTAAGTGTGAAAAATATATTTTCGATCTCTCGATTATTGGTAAATTATGATTTTGATCCTCGTGATATATGACTCAGACTTGTGTGTCTAACCTTTGGTTAGGACTAGAATTAGAATTTCTCAATAACTGAGGGACTAAAAATATTATGAACTCTAAATTTTTACCATGGTTTAAAATATTGCCACTTGCTTATGTATGATTTAAATATTTGTTGCAGATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAA</genome_strand>
        <mrna_strand>ATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGGCCAAAACACAAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG..........................................................................................................................................................................................................................ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGAGTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTGGGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268033" ref_strand="+" ref_description="SGN-E268033 [cLEI-15-F15]">
      <seq>tgaatctgcatctggaaacactaatttagtgtacaaaggttgtgcaaaacaggcattatcagatccatctggtgtttactcacaagccctttcaaccctttttggcactcttgtttcacaatcttcaaaatccaagttctacaaaactacaactggtactggccaaactacaataactggtctttttcagtgtagaggtgaccttactaatattgattgttacaactgtgtaaatggtttgccaatactgattgacaagctctgtggcacccctgttgctgcaagaatccagcttttaagctgttacatgctgtatgaagtctcaagcttcccacaaatctcaggaatggagatgttgtacaagacttgtagtggaaaaaatgcaccagggagtggatttgaggagaagagggatactgctttttcaacactggaaaatggaatgtctagtgctaataatggattttacacttcaaattatgagtctgtttttgttttgggacaatgtgaaagggatgtaagctcttctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="68616" stop="67484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68316" g_stop="67784" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E268033" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68316" e_stop="67784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAGGGGATGTAGGCTCTTCTGATT</genome_strand>
        <mrna_strand>TGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAAGCTGTTACATGCTGTATGAAGTCTCAAGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAAGGGATGTAAGCTCTTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607451" ref_strand="+" ref_description="SGN-E607451 [23416]">
      <seq>ctttttcctctcaaaatctacaaaacagcaaaaaaacaacaaccatggtatacatatttcaagaatctccaaaaaatggtaatggggttgtccaagaaaccatttttattcattttcttggccattctagctattttcaagaatctcccaaaaatggggttgtccaagaaaccatttttttgcattctctctgtttatttagtcattctagccattttccagaatgtagcaccagctgaatctgcatctggaaacactaatttagtgtacaaaggttgtgcaaaacaggcattatcagatccatctggtgtttactcacaagccctttcaaccctttttggcactcttgtttcacaatcttcaaaatccaagttttacaaaactacaactggtactggccaaactacaataactggtctttttcagtgtacaggtgacctctctaatattgattgttataactgtgtaaatggtttgccaatactgattgacaagctctgtggcacccctgttgctgcaagaatccagctttaaggctgttacatgctctatgaagtctctggtttcccacaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="68849" stop="67676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68549" g_stop="67976" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E607451" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68549" e_stop="67976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCTCTCAAAATCTACAAAACAGCAAAAA-ACAACCACCAT-GTATA-GTTTTTCAAGAATCTCTAAAAAATGGTAATGGGGTTGTCCAAGAAACCATTTTTATGCATTTTCTTGGCCATTCTAGCCATTTTCAAGAATCTCCCAAAAATGGGGTTGTCCAAGAAACCATTTTTTTGCATTTTCTGTGTTTATTTAGCCATTCTAGCAATTTTCAAGAATGTAGCACCAGCTGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCT</genome_strand>
        <mrna_strand>CTTTTTCCTCTCAAAATCTACAAAACAGCAAAAAAACAACAACCATGGTATACATATTTCAAGAATCTCCAAAAAATGGTAATGGGGTTGTCCAAGAAACCATTTTTATTCATTTTCTTGGCCATTCTAGCTATTTTCAAGAATCTCCCAAAAATGGGGTTGTCCAAGAAACCATTTTTTTGCATTCTCTCTGTTTATTTAGTCATTCTAGCCATTTTCCAGAATGTAGCACCAGCTGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTTTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTACAGGTGACCTCTCTAATATTGATTGTTATAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTAAGGCTGTTACATGCTCTATGAAGTCTCTGGTTTCCCACAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709383" ref_strand="+" ref_description="SGN-E709383 [FA51DA02]">
      <seq>catattttgtgaatgtaagagatcgaagagaggtccaaccacttcaatcaaattcttttacgtggagaagtaaaagtttctcgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagagataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgcccagcggttctgaaacttttgaagatgctcctgatagacaccagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacggccagacacggtatatcactccgcactcttattcgcaagagtgctgatatttctggtccttgcttgctgattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="73601" stop="74790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73901" g_stop="74318" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74319" i_stop="74415" i_length="97">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.548" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74416" g_stop="74488" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="493" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74489" i_stop="74608" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74609" g_stop="74614" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="499" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E709383" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73901" e_stop="74318"/>
          <exon e_start="74416" e_stop="74488"/>
          <exon e_start="74609" e_stop="74614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCAAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTG-CCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACA-CAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAGGTAACCTTGATTTTAAAATAGTTTCTGCTATGACGTATATTATAACTTCAGTATCCTGAATACTAATATCTATCCTGTTCATTCTAATGAAGGGCAGTACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTGGTATGTTCACCTAAATTGCTGCAAATATTTGTCGTGCATACATTCCTGACTTCTATAGCAATTTTTAAAGGATCTCATCTTTCTTTTGAAGATGAATTTTCTTTATAATGTTTGTGTCAGATTACT</genome_strand>
        <mrna_strand>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCCAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACCAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG.................................................................................................TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG........................................................................................................................ATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256488" ref_strand="+" ref_description="SGN-E256488 [cLEG-38-N21]">
      <seq>cgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagagataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgccagcggttctgaaacttttgaagatgctcctgatagacacagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacggccagacacggtatatcactccgcactcttattcgcaagagtgctgatatttctggtccttgcttgctgattactggtgataagaagggtgctgtgtttggtgggttgctcgaggcaccgttaaagcctactgcaaagaggaaataccaaggaacaaatcaatcatttgtattcacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="73682" stop="75268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73982" g_stop="74318" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74319" i_stop="74415" i_length="97">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.548" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74416" g_stop="74488" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="410" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74489" i_stop="74608" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74609" g_stop="74689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="491" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74690" i_stop="74937" i_length="248">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74938" g_stop="74968" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="522" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E256488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73982" e_stop="74318"/>
          <exon e_start="74416" e_stop="74488"/>
          <exon e_start="74609" e_stop="74689"/>
          <exon e_start="74938" e_stop="74968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAGGTAACCTTGATTTTAAAATAGTTTCTGCTATGACGTATATTATAACTTCAGTATCCTGAATACTAATATCTATCCTGTTCATTCTAATGAAGGGCAGTACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTGGTATGTTCACCTAAATTGCTGCAAATATTTGTCGTGCATACATTCCTGACTTCTATAGCAATTTTTAAAGGATCTCATCTTTCTTTTGAAGATGAATTTTCTTTATAATGTTTGTGTCAGATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAAGTAAGGAAGCAAATACATGCAGTATTTAATTTTCTTTTAACTGATACAACCTAATGTTCGAAGAGAAAACCACCAGTTTCTGGTCTAATCTTACTCTTGGTAATTGACTTGGTGCGAGTAAAGCATTTCAAACCCCCTTTACTTCAAATGAAGAGTTAAAAAGCAATTGCCTATGTCTGCATTCTCCATTCTCACTGAGCATTGGTTTTATTTCTAATGCTTATGTGGTTATTGTATTATTGTGACAGGGAACAAATCAATCATTTGTATTCACAACTC</genome_strand>
        <mrna_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG.................................................................................................TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG........................................................................................................................ATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAA........................................................................................................................................................................................................................................................GGAACAAATCAATCATTTGTATTCACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262088" ref_strand="+" ref_description="SGN-E262088 [cLEG-58-I7]">
      <seq>cgttgcgcgataaacctctggatgagtttgaggttcacaatgattataaagttataccagatattcatccagaagaaggtgaaaatggttccatcaggagttcagtctgtgtgaaggagacggtaaatgcagacaacgataatggagagcctacttctgctgggagcattgccagcggttctgaaacttttgaagatgctcctgatagacacagctttgagcagtcactggcctatctcactactgattctgttttcattactccaaatttgtatgattttttccagtcttcccttcctaatatagtgaaaggttgtcaatgggtcttgttatatagtacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="73682" stop="74621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73982" g_stop="74318" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E262088" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73982" e_stop="74318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG</genome_strand>
        <mrna_strand>CGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGTTATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224311" ref_strand="-" ref_description="SGN-E224311 [cLEL-19-I1](-)">
      <seq>tttttttttttttttttgtaacagcgtacaaagtgcattttatatcgactataactaaacatgaaatatcgatgtactgtaactgatcactatccattcagagttttgcttccaggaagggcaatatggttacacaagaatgatacaacagaatactaataacccaaggctggttttgggatgaccgaataaactctgcacttcagatgttatctcaagttgggggctatgtctattagcctgcccacccccaaaatttagcaaaaaccagaagtacatattaaagaacaggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="68267" stop="77291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76412" g_stop="76428" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76429" i_stop="76712" i_length="284">
            <donor d_prob="0.020" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76713" g_stop="76991" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="296" r_length="279" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E224311" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224311" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="76412" e_stop="76428"/>
          <exon e_start="76713" e_stop="76991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTTTTGTTAGCTGTACTTTTGAATACTTCTATTCATTCTTTCGTGTCCATGAAGCAGTTGTCTGTATAATCTGCCGGACATGGGCCGATTGTAGCGTAGGGACGAAAGTCTAGCAATTGTGAGTTGATATTCATGTAGATGATATTTTTGGTTCTGAATCCTTCAAGCCAGGGAAGGCTTTATTTGTTGTGATTTTATGTAATAGCAAACTACAAGTTAAATTTACTATTTTTACTTTGAGCCTTTCATGATGTACACAACAATGAATTCAGATCAACTCTTGAACATGAAAAAAAATAATAGCGTACAAAGTGCATTTTATATCGACTATAACTAAACATGAAATATCGATGTACTGTAACTGATCACTATCCATTCAGAGTTTTGCTTCCAGGAAGGGCAATATGGTTACACAAGAATGATACAACAGAATACTAATAACCCAAGGCTGGTTTTGGGATGACCGAATAAACTCTGCACTTCAGATGTTATCTCAAGTTTGTGGTTATGTCTATTAGCTTGCCCACCCCCAAAATTTAGCAAAAACCAGAAGTACATATTAAAGAACAGGACTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................GTAACAGCGTACAAAGTGCATTTTATATCGACTATAACTAAACATGAAATATCGATGTACTGTAACTGATCACTATCCATTCAGAGTTTTGCTTCCAGGAAGGGCAATATGGTTACACAAGAATGATACAACAGAATACTAATAACCCAAGGCTGGTTTTGGGATGACCGAATAAACTCTGCACTTCAGATGTTATCTCAAGTTGGGGGCTATGTCTATTAGCCTGCCCACCCCCAAAATTTAGCAAAAACCAGAAGTACATATTAAAGAACAGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378589" ref_strand="+" ref_description="SGN-E378589 [TUS-36-G23]">
      <seq>aaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcatgttcaagagttgatctgaattcattgttgtgtacatcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77628" stop="76318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77328" g_stop="77280" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77191" g_stop="76618" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="623" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E378589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77328" e_stop="77280"/>
          <exon e_start="77191" e_stop="76618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</genome_strand>
        <mrna_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375090" ref_strand="+" ref_description="SGN-E375090 [TUS-36-G23](-)">
      <seq>gcccgtaattttaaaaatattgggggcggcctggtagggatcaaatggaggattaggctcatttccagcgttaaaacaaacagctttttcctttgcatttgctgcaagatcccagtgttatttcaagggtaggaggtcgatgaaagccctgttctttaatatgtactttgggtttttggtaaattttgggggtgggcaagctaatagacataaccccaaacttgagataacatttgaagtgcaaagtttattcggtcatcccaaaaccacccttgggttattagtattctgttggatcattcttgggtaaccatattgcccttcctggaagcaaaactttgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgccctttgtacgctattattttttttcatgttcaaaagttgatttgaattcattgttgtgtacctcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttgctttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77432" stop="76295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77132" g_stop="76620" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="550"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E375090" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77132" e_stop="76620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGTAA-TCTAAGAATATTCG-GGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</genome_strand>
        <mrna_strand>GCCCGTAATTTTAAAAATATTGGGGGCGGCCTGGTAGGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAACAAACAGCTTTTTCCTTTGCATTTGCTGCAAGATCCCAGTGTTATTTCAAGGGTAGGAGGTCGATGAAAGCCCTGTTCTTTAATATGTACTTTGGGTTTTTGGTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCCCAAACTTGAGATAACATTTGAAGTGCAAAGTTTATTCGGTCATCCCAAAACCACCCTTGGGTTATTAGTATTCTGTTGGATCATTCTTGGGTAACCATATTGCCCTTCCTGGAAGCAAAACTTTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCCCTTTGTACGCTATTATTTTTTTTCATGTTCAAAAGTTGATTTGAATTCATTGTTGTGTACCTCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375091" ref_strand="+" ref_description="SGN-E375091 [TUS-36-G23]">
      <seq>aaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcatgttcaagagttgatctgaattcattgttgtgtacatcatgaaaggctcaaagtaaaaatagtaaatttaacttgtagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77628" stop="76322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77328" g_stop="77280" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77191" g_stop="76622" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="619" r_length="570" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E375091" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77328" e_stop="77280"/>
          <exon e_start="77191" e_stop="76622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTG</genome_strand>
        <mrna_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230968" ref_strand="+" ref_description="SGN-E230968 [cLED-5-I21]">
      <seq>aaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctggtgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattattttttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77628" stop="76403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77328" g_stop="77280" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77191" g_stop="76703" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="538" r_length="489" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E230968" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77328" e_stop="77280"/>
          <exon e_start="77191" e_stop="76703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCAT</genome_strand>
        <mrna_strand>AAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGGTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223927" ref_strand="+" ref_description="SGN-E223927 [cLEL-19-I1](-)">
      <seq>agcaacatgtctaaatttggtccagatgcagcatatatagctgtcggatctattggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagcttttttcctttgcatctgctgcaagatcacatgtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77487" stop="76414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77187" g_stop="76715" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="496"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E223927" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77187" e_stop="76715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTA-TGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGC-TTTTTCCTTTGCATCTGCTGCAAGATCACA-GTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATT</genome_strand>
        <mrna_strand>AGCAACATGTCT-AAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATTGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTTCCTTTGCATCTGCTGCAAGATCACATGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712900" ref_strand="+" ref_description="SGN-E712900 [FB06AE09]">
      <seq>ccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattgcccttcctggaagcaaaactctgaatggatagtgatcagttacagtacatcgatatttcatgtttagttatagtcgatataaaatgcactttgtacgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77430" stop="76417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77130" g_stop="76718" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="431"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E712900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77130" e_stop="76718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCT</genome_strand>
        <mrna_strand>CCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571926" ref_strand="+" ref_description="SGN-E571926 [30999]">
      <seq>agtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttatgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccaaggctgattggaatcacatcaaaaccttccctgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcatcgtacatagctgtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggagggttaggctcatttccagcgttaaagcaaacagcttcttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagtcctgttctttaatatgtaggttcttctggtttttgctaaattttggggtgggcaggctaatagacatataaccacaaacttgggataacatctgaggtgcagagtttattcagtcaatcccaaaaccagccttgggttagtattgtgttgtatcattcttgtgtaaccgtatcgtccttcctggaagcaaaactctgaatggataatgatcagttacagtacattgagatgttatgtttgtagccatagtaatattgcattaaaggattttccatgatggttactaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="79032" stop="76449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78841" g_stop="78836" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="84" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="181" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="233" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77882" i_stop="77351" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77350" g_stop="77280" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="298" r_length="65" r_score="0.859"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77191" g_stop="76773" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="718" r_length="420" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E571926" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78841" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
          <exon e_start="77350" e_stop="77280"/>
          <exon e_start="77191" e_stop="76773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTA----CTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGAC--ATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTC-ATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACA</genome_strand>
        <mrna_strand>AGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTATGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGT---C-GC--CAAGGCTGATTGGAATCACATCAAAACCTTCCCTGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCATCGTACATAGCTGTCGGATCTATGGACCGCAATTTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGGTTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTCTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGAT--GAGTCCTGTTCTTTAATATGTAGGTTCTTCTGGTTTTTGCTAAATTTT-GGGGTGGGCAGGCTAATAGACATATAACCACAAACTTGGGATAACATCTGAGGTGCAGAGTTTATTCAGTCAATCCCAAAACCAGCCTTGGG---TTAGTATTGTGTTGTATCATTCTTGTGTAACCGTATCGTCCTTCCTGGAAGCAAAACTCTGAATGGATAATGATCAGTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556371" ref_strand="+" ref_description="SGN-E556371 [cTSD-3-E19]">
      <seq>gcaggattcggcacgagggggacttcagggtctttggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaaggtgatggccatgttgggtctgtaactgccatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaacttcaaaactttcgctccttacgatgataacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccagcgtcaaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatagacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtatcctgttgtatcattcttgtgtaacccatattgcccttcctggaagcaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="79180" stop="76497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78897" g_stop="78836" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.790"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="238" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="290" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77882" i_stop="77351" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77350" g_stop="77280" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="361" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77191" g_stop="76797" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="757" r_length="396" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E556371" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78897" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
          <exon e_start="77350" e_stop="77280"/>
          <exon e_start="77191" e_stop="76797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGATCCT-TGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAA-CCATATTGCCCTTCCTGGAAGCAAAACT</genome_strand>
        <mrna_strand>GCAGGATTCGGCACGAGGGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAAGGTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATCCTGTTGTATCATTCTTGTGTAACCCATATTGCCCTTCCTGGAAGCAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586159" ref_strand="+" ref_description="SGN-E586159 [60210]">
      <seq>cggcacgaggatcaaaaccttccctgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcatcgtacatagctgtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggagggttaggctcatttccagcgttaaagcaaacagcttcttcctttgcatctgctgcaagatcacagagtactatctcgagggtaggaggtcgatgagtcctgttctttaatatgtaggttcttctggtttttgctaaattttggggtgggcaggctaatagacatataaccacaaacttgggataacatctgaggtgcagagtttattcagtcatcccaaaaccagccttgggttagtattctgttgtatcattcttgtgtaaccatatcgtccttcctggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77610" stop="76502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77320" g_stop="77280" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.780"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="0.78"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77191" g_stop="76802" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="433" r_length="392" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E586159" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77320" e_stop="77280"/>
          <exon e_start="77191" e_stop="76802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCAC--AGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTA----CTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGAC--ATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCA</genome_strand>
        <mrna_strand>CGGCACGAGGATCAAAACCTTCCCTGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCATCGTACATAGCTGTCGGATCTATGGACCGCAATTTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGGTTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTCTTCCTTTGCATCTGCTGCAAGATCACAGAGTACTATCTCGAGGGTAGGAGGTCGAT--GAGTCCTGTTCTTTAATATGTAGGTTCTTCTGGTTTTTGCTAAATTTT-GGGGTGGGCAGGCTAATAGACATATAACCACAAACTTGGGATAACATCTGAGGTGCAGAGTTTATTCAGTCATCCCAAAACCAGCCTTGGG---TTAGTATTCTGTTGTATCATTCTTGTGTAACCATATCGTCCTTCCTGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398559" ref_strand="+" ref_description="SGN-E398559 [TUS-19-I3]">
      <seq>caaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatatacataaccacaaacttgagataacatctgaagtgcagagtttattcggtcatcccaaaaccagccttgggttattagtattctgttgtatcattcttgtgtaaccatattggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77629" stop="76517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77329" g_stop="77280" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77191" g_stop="76818" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="424" r_length="374" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E398559" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77329" e_stop="77280"/>
          <exon e_start="77191" e_stop="76818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATT</genome_strand>
        <mrna_strand>CAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATATACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237598" ref_strand="+" ref_description="SGN-E237598 [cLED-19-A5]">
      <seq>cagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgctatctcgagggtaggaggtcgatgagagtcctgttctttaatatgtacttctggtttttgctaaattttgggggtgggcaagctaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="77464" stop="76628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77164" g_stop="76928" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E237598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77164" e_stop="76928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAG</genome_strand>
        <mrna_strand>CAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408175" ref_strand="+" ref_description="SGN-E408175 [PPI-10-G10]">
      <seq>gtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttacgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttgggaggctcagatatacgagtttatcaagtcgccagtgtcaaggctgattggaatcacatcaaaaccttccctgacttatcaggcacaggcaaagcaacatgtctgaaatttggtccagatgcatcgtacatagctgtcggatctatggaccgcaatttaagaatattcgggctgcctggtgaggatcaaatggagggttaggctcatttccagcgttaaagcaaacagcttcttcctttgcatctgctgcaagatcacagagtactatctcgagggtaggaggtcgatgagtcctgttctttaatatgtanggtcttctggtttttgctaaattttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="79032" stop="76645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78847" g_stop="78836" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="90" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="187" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="239" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77882" i_stop="77351" i_length="532">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77350" g_stop="77280" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="310" r_length="71" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77191" g_stop="76945" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="561" r_length="251" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E408175" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78847" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
          <exon e_start="77350" e_stop="77280"/>
          <exon e_start="77191" e_stop="76945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACA--GTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTA----CTTCTGGTTTTTGCTAAATTTTGGG</genome_strand>
        <mrna_strand>GTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTACGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTGGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGTGTCAAGGCTGATTGGAATCACATCAAAACCTTCCCTGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCATCGTACATAGCTGTCGGATCTATGGACCGCAATTTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGGTTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTCTTCCTTTGCATCTGCTGCAAGATCACAGAGTACTATCTCGAGGGTAGGAGGTCGAT--GAGTCCTGTTCTTTAATATGTANGGTCTTCTGGTTTTTGCTAAATTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250297" ref_strand="+" ref_description="SGN-E250297 [cLEG-6-K14]">
      <seq>ttttatgatcttgcttctggtttatgccttacacatgtagcagatgcttcagaatctgagggctatacttctgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctttggtcaagatatgggatgtaaaaagtcatgcaaatgttgcaaaatttgatggccatgttgggtctgtaactgccatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaacttcaaaactttcgctccttacgatgataacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttagcgaggccccttccccgatatacgagtttatcaagtcgccagcgtcaaggctgaatggaattccatcaaaaccttccccgacttatcaggcacaggcaaagcaacatgtctgaaatttgggccagatgcagcatatatagctgtcggatctatggaccgtaatctaagaatattcgggctgcctggtgaggatcaaatggaggattaggctcatttccagcgttaaagcaaacagctttttcctttgcatctgctgcaagatcacagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="79403" stop="76717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79103" g_stop="79068" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79067" i_stop="78953" i_length="115">
            <donor d_prob="0.868" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78952" g_stop="78836" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="153" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="231" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="328" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="380" r_length="52" r_score="0.827"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77882" i_stop="77773" i_length="110">
            <donor d_prob="0.996" d_score="0.82"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77772" g_stop="77766" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="387" r_length="7" r_score="0.571"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77765" i_stop="77351" i_length="415">
            <donor d_prob="0.660" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77350" g_stop="77280" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="458" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77191" g_stop="77017" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="633" r_length="175" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E250297" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79103" e_stop="79068"/>
          <exon e_start="78952" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
          <exon e_start="77772" e_stop="77766"/>
          <exon e_start="77350" e_stop="77280"/>
          <exon e_start="77191" e_stop="77017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAG-GAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAGGTATAGTGTTTCCTCTCATTTTAGACTCTCTAAAATGTGCTCTTGATGACATAAGGTAAATAATAGTTATCGTTATCATCTTATGCAGGCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGC</genome_strand>
        <mrna_strand>TTTTATGATCTTGCTTCTGGTTTATGCCTTACACAT...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAT...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGCGAGGC-CCCTTCCCCG..............................................................................................................ATATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG........................................................................................GCAAAGCAACATGTCTGAAATTTGGGCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439538" ref_strand="+" ref_description="SGN-E439538 [cSTA-12-F9]">
      <seq>ctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacagcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttccgcagctttccatcctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttacgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttatcaagtcgccagtgtcaaggctgattggaatcacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="80399" stop="77008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80097" g_stop="80023" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="92" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80022" i_stop="79173" i_length="850">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79172" g_stop="79068" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="197" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79067" i_stop="78953" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78952" g_stop="78836" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="314" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="392" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="489" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="541" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77882" i_stop="77351" i_length="532">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77350" g_stop="77308" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="584" r_length="43" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E439538" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80097" e_stop="80023"/>
          <exon e_start="79172" e_stop="79068"/>
          <exon e_start="78952" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
          <exon e_start="77350" e_stop="77308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACGGTAAGACATCTACACAAATATATAGACCCTGATACCTCTCATTTTTCTTGAACTTAAAAGTAGTTCCCCTTGATGGGTCTCAAAAGACTTCAGCGTAGCTCAATCTTCATATTTTTGGTTTACACGGCCCTTTAGTATCTGTTTCAACTATATACCCTTATTTATCATCTTAAATGATTTAAAATGTTTAAGCTCCTTTTCAATAAATATAAAGAGTGTGAATCTAGCAATCATAATATTGAAATATTTGTATGTGCTCTTCACTTGGATTTTCTATGCTAATTAGTCAATGTTTATTATTTCCAAGAACAATTATTAGTAAGGGGAAAATGGGAAGGATGTACTCAACCATCTATTTATAGCAAGGCCGACAAGGGGTTTGGAGGGAGTTAAAAAAAAAAAGAGAAACCAAGAGCCTTGGTGGATTTATCATTGTACTTAAATTGCCATTATGTATCCCTTGTTAAGTGATCCCTGGAGTAATCTTTTTGACCAATTATCCTTCTTGTCATTTCTTTCTGTGCTGAATCAGAGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATC</genome_strand>
        <mrna_strand>ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACAGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCCGCAGCTTTCCATCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTCTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTACGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATCAAGTCGCCAGTGTCAAGGCTGATTGGAATCACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582682" ref_strand="+" ref_description="SGN-E582682 [8315]">
      <seq>actaagtggtcattcaaagagggttaccagtgttaagtttgcggctgagggtgaactcgtggtctctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacagcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttccgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcacgaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttatgatgaaaacacaccaactcaatcagtggaattgaccatagtggaagttatcttgccttaggaggctcagatatacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="81179" stop="77583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80879" g_stop="80858" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80857" i_stop="80721" i_length="137">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80720" g_stop="80661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="82" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80660" i_stop="80098" i_length="563">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80097" g_stop="80023" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="157" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80022" i_stop="79173" i_length="850">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79172" g_stop="79068" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="262" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79067" i_stop="78953" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78952" g_stop="78836" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="379" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="458" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="555" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="606" r_length="51" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E582682" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80879" e_stop="80858"/>
          <exon e_start="80720" e_stop="80661"/>
          <exon e_start="80097" e_stop="80023"/>
          <exon e_start="79172" e_stop="79068"/>
          <exon e_start="78952" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCA-GAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</genome_strand>
        <mrna_strand>ACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAGTTTGCGGCTGAGGGTGAACTCGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACAGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCCGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTCTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCACGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTATGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAA-TTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453854" ref_strand="+" ref_description="SGN-E453854 [cSTS-21-I12]">
      <seq>ggagaactcgtggtctctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacagcacaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttccgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctctggtcaagatatgggatgtaaaaagtcaggcaaatgttgcaaaatttgatggccatgttgggtctgtaactgctatttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactttgggatttacgcaaattgaagaactttagaactttcgctccttatgatgaaaacacaccaactcaatcagtggaatttgaccatagtggaagttatcttgccttaggaggctcagatatacgagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="80993" stop="77581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80693" g_stop="80661" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80660" i_stop="80098" i_length="563">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80097" g_stop="80023" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="108" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80022" i_stop="79173" i_length="850">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79172" g_stop="79068" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="213" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79067" i_stop="78953" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78952" g_stop="78836" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="330" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107">
            <donor d_prob="0.804" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78728" g_stop="78651" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="408" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108">
            <donor d_prob="0.776" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="78542" g_stop="78446" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="505" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77934" g_stop="77883" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="557" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E453854" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80693" e_stop="80661"/>
          <exon e_start="80097" e_stop="80023"/>
          <exon e_start="79172" e_stop="79068"/>
          <exon e_start="78952" e_stop="78836"/>
          <exon e_start="78728" e_stop="78651"/>
          <exon e_start="78542" e_stop="78446"/>
          <exon e_start="77934" e_stop="77883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAGGTCTGTTTGCTCCAAAGACATCATGATTGCTCATGTCATTTCTCTTCTTCTGTCCTAGTATTCTTACTGTCTGCTTTTTATGTGTTTTTTTTGGTGCTTCTCTTCAGGCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCAGTGAGTATTCCAATACTGAATTAAGCTTTTGATAATCTTTGTTTCCTGGCGTAAAGCTATGTATGATTGAACTTATGACTGATGTTTCCTTTCTACGTTAATAATCAGACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAGGTATACATTAATTGCATTTCCTGAAGCAAGACACTGAATCCATTCAAAGAAAGCTTTGTCAGTTTGTAAATAAAGATATTTTAGTGTCTGCTTGAGTAGTTTTGGAAGGTAAAAACATTTGTTTCATGGATTACTGTATATTACAGCATACTAACTTATGTCTGTCATTTATGGAAATTTCCTTTTTAGTCTGGAAAGTGTTTCACATTAACAAAGTACTGTATGTTTGAAAATGCTATCTCAAGTTCCACTGTTGTTTATGGGCCATTCCCTTTTTAAAGTCTGGTAGCTTTCTAATTCAGAAGTCTACTTCAGAGCTTCTCATTTATACACTGTTTGCATATTGGTTATGACTCAGACTCCTTTCAAGTAGTGTTATAACTACTCCATTGTACCTTCATCTTTTAGGATGTTAATCTAAGCTACTTCTATCATGAATTCATCTTCTTTAGCAATTTTATTTGTCATTAAAAAAAAGATCGTCTAATTCTGCGTCTCCTTTTACTTGCAGTGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</genome_strand>
        <mrna_strand>GGAGAACTCGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACAGCACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCCGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTCTGGTCAAGATATGGGATGTAAAAAGTCAG...........................................................................................................GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCTATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA............................................................................................................ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTTAGAACTTTCGCTCCTTATGATGAAAACACACCAACTCAATCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317821" ref_strand="+" ref_description="SGN-E317821 [cTOA-30-D23]">
      <seq>acaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgctactggtggagtcgattcaaacgctgtggtctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactagtggtctctggttcagcagataagacagttcgtgtgtggcaaagttccgaaaatggaaattatgactgtaggcatgtcttgaaggatcatactgcagaggtgcaagctgtcactgtccatgcaaccaataattattttgttactgcttctcttgatagcacgtggtgcttttatgatcttgcttctggtttatgccttacacaggtagcagatgcttcagaatctgagggctatacttctgcagctttccaccctgatggtctgatccttggaacagggacttcagggtctttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="82491" stop="78560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82191" g_stop="82130" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="184" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81736" g_stop="81620" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81619" i_stop="80954" i_length="666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80953" g_stop="80858" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="397" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80857" i_stop="80721" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80720" g_stop="80661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="457" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80660" i_stop="80098" i_length="563">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80097" g_stop="80023" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="532" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80022" i_stop="79173" i_length="850">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79172" g_stop="79068" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="637" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79067" i_stop="78953" i_length="115">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78952" g_stop="78860" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="730" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E317821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82191" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81620"/>
          <exon e_start="80953" e_stop="80858"/>
          <exon e_start="80720" e_stop="80661"/>
          <exon e_start="80097" e_stop="80023"/>
          <exon e_start="79172" e_stop="79068"/>
          <exon e_start="78952" e_stop="78860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAGGTTGCTTTTCCCTTTCGGCTCTCATTCTCAAAAAACAATGTATAGATGGTTGGAATCATCGATCAACTTTTATAAACTAATTGACTTGTTAAAAAATATTCATATTGTAATTCAGGTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTC</genome_strand>
        <mrna_strand>ACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG...................................................................................................................GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307718" ref_strand="+" ref_description="SGN-E307718 [cLEY-16-C14]">
      <seq>ggttacttgcccaggctgaaagacaaatacccatggcaggcactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgctactggtggagtcgattcaaacgctgtggtctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactactggtctctggttcagcagataagacagttcgtgtgtggcaaagttccgaaaatggaaattatgactgtaggcatgtcttgaaggatcatactgcagaggtgcaagctgtcactgtccatgcaaccaataattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="82513" stop="78834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82213" g_stop="82130" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="206" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81736" g_stop="81620" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="323" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81619" i_stop="80954" i_length="666">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80953" g_stop="80858" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="419" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80857" i_stop="80721" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80720" g_stop="80661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="479" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80660" i_stop="80098" i_length="563">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80097" g_stop="80023" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="554" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80022" i_stop="79173" i_length="850">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79172" g_stop="79134" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="593" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E307718" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82213" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81620"/>
          <exon e_start="80953" e_stop="80858"/>
          <exon e_start="80720" e_stop="80661"/>
          <exon e_start="80097" e_stop="80023"/>
          <exon e_start="79172" e_stop="79134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAGGTAATTTCACATTTACAACTTGATCGATACTGGAAGAACTGATTTTGAAATACCATTTATTATTGAGGGAGACAATGCTGGTAATTGTCCTGCTTGATTGCACAAAACTTGATATTCATTCTATAAAACAAGCTAATGAGTTTTCTGGTCTTGATCATCAATCTTAGTGCCCCATTCACCAGTCCACTTTTTTGGATATTTCCTTTTTAGGCTTAGATATGGGAATGATAAAATAGATCATTAAGAAGTGAAGGATGGAGATGGGACTAATTTTTTTTCTTCTTTTGATTAGGTAGATGAAAATGATCTATTTGGGACTTGTGCTTCGTTGTACTAAAAAAATGTATTTTTCAATATCTACCTATGTAGTAAAAGAGTAGATCCATAGTACAAAAAATTTTGCTCTGAAATTGGTAGATCTTCTTATTTTTCTGACAATAGTAAGGTTGACTTGGGAATATATCTTCTGTTGTATGAACTATCAAATAGAAATAATGTGTTTCTTGTGTCCTTGGAGTTGTCTTTACTTCATGTTAGATTTAGTTCTTTTGTCCCCTAGACTAATTTCATGGTGAGATTCCACTTCTTGAATCAATTACCTGCATGCTTTGAAAATTTTCTCCACATTCTGCTTGAAGGAAAATAAAACAAAGGGAAAAACATTTTGCAGGAGGTAAGGGGCTTGTAGAAATCAATGTTATGTCGTCCTTGCCTTCAAATATTAGCTTTGCAGACCCTTGAAATTGCCTTCACCCTTGATATTTTGACATTACTTCATTTTTAGGTTGTCGCTTTCAACTGATTATAGTTCATTTTCAAACCTTTTAATCAGTAATTTAACATATTGCAGGTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTT</genome_strand>
        <mrna_strand>GGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGGCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTACTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572079" ref_strand="+" ref_description="SGN-E572079 [31176]">
      <seq>tgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacattggcccctgtggatgctttggcgagatatacccaactgaatagttttcctcttcacaaaaccaacaaaccgggcattttgtctttggatattcattatgctaaggacataattgctactggtggagttgattcaaatgctgtgatctttgatcgaccttcaggacagatcatatcaacactaagtggtcattcaaagagggttaccagtgttaaatttgcggctgagggtgaactcgtggtctctggttcagcagataagacggttcgtgtgtggcaaagttctgaaaatggaaattatgactgtaggcatgtcttgaaggatcatacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="83875" stop="79730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83575" g_stop="83539" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="124" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="266" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="388" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81736" g_stop="81620" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="505" r_length="117" r_score="0.949"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81619" i_stop="80954" i_length="666">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80953" g_stop="80858" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="601" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="80857" i_stop="80721" i_length="137">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="80720" g_stop="80661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="661" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="80660" i_stop="80098" i_length="563">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="80097" g_stop="80028" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="731" r_length="70" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E572079" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83575" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81620"/>
          <exon e_start="80953" e_stop="80858"/>
          <exon e_start="80720" e_stop="80661"/>
          <exon e_start="80097" e_stop="80028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGGGTCTGTCATCTTATTGCTACTTACTTTTTTTACTGTCACTTGATGATTTATTAGCTATGTTTCGTTAGCAGAATTTCTGTCTCAATATTTATTTATTTTTTTAAAAAAATCTGTCTCAGTATATTCTGCCTTTATAGGTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAGGTGCACATAATTGTTTCTCTTTAATGCGAGTTGACCATACACTGCTCATTTCATAATCAAAAGTAGCCTTCATCTTCTTGTCTTGTTAAACCTTATACTTTCTTTAGTATGTTATCCCCTTCTATGGCAGGGTATGTGCTCTACTTTTTTGGAATTACTGGAAAGAGTTTACTTGTAAAGAATATCTAATCACGAACCAGTGATGTTAGATGTCTCAGTATGGAGTTTCTTTAAAATTTTGCTGCCAAATTTACTTTTTGCTATGCTTCCAAGAATAGAGTTAATAAAAAAAAAGGAAAATGATTATTTTGATTCAAAATTTGTGTTTTTGATGATTGCTTTGCCTCTTCAGTTCTAGACTTTCTAGGATCAGATTTAGTTAGAAGTAGGATTTGGAAGTTCTTAATATAACAGCAACTTTAGATTCAAAGGTTATTGTCATTTCAGATGATTTTGGCTCCTCCTCTAAGTAGTATAAGTATAAACTGTAACATGCTGTTGCTTAATGCACAGTTGCTTTCTTCCTTTGATATTTTACTAAACTGTGTAGCTGATTTTTGCAGACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTG</genome_strand>
        <mrna_strand>TGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTGCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCGGCAACATTGGCCCCTGTGGATGCTTTGGCGAGATATACCCAACTGAATAGTTTTCCTCTTCACAAAACCAACAAACCGGGCATTTTGTCTTTGGATATTCATTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTTGATTCAAATGCTGTGATCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG.........................................................................................................................................GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTCGTGGTCTCTGGTTCAGCAGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTCGTGTGTGGCAAAGTTCTGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482474" ref_strand="+" ref_description="SGN-E482474 [cSTD-22-G16]">
      <seq>ccagactgagagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacaggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacattggcccctgtggatgctttggcgagatatacccaactgaatagttttcctcttcaacaaaaacaacaaaccgggcattttgtctttggatattcattatgctaaggacataattgctactggtggagttgattccaatgctgtgatctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="82503" stop="80606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82203" g_stop="82130" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="196" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81736" g_stop="81620" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="314" r_length="118" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81619" i_stop="80954" i_length="666">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80953" g_stop="80906" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="362" r_length="48" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E482474" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82203" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81620"/>
          <exon e_start="80953" e_stop="80906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTC-ACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAGGTAAGTTCTTTCTTTTGTTTTCCCTGTGATTTGTTTTTCATTATTTTTCACAAGGCAGATGCAGCCAAAATATTTTTCCTGGACTTGACCATGTGTACTCATCCAATGTGGTTGTATGAATCTGGCACCCGTACTTGCACTTTTCATGCCAACTATTAGTATGATTTGAAGAAGTCGCATGAAATACTGATGTGCATGTCATACCCATTTGACATCTATGTTGACTCAAATGGAAGATCCACTTAACATTGACTAAAATATATTCCTGTTAGCTAATAGAGTCATTTGTTTTGAAACTTCTGCTTTTAGTATAGCTGCATAACTTTACTAGCTATTGCATTAATGGCCTTGCCTCTGAAAGTTGTCTTTATACTATAGCTACATAAATATTGATTGCTTATCTAGATACATGTGATATATTGTCTTAAGGCTCGAGTGGTTCTACAGAAGTATGTTCCTATTTCTATCTACTCGAAATAGGAGCTCGCAAGTTAGATTTAGAGCCTGCTCATCCATCTGCATTATCACATTAGTGCAAAACAACTGAATAATTTTGTGTTATTAAAAGATTCTCTTTATACGATGGAACTTTTTGATTAATGAGAAAGTCAATTGTTGTGGATATTTAATGATCAGCATGTCTAGTTCTAATTTATGTTTTGCCAGGACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGAT</genome_strand>
        <mrna_strand>CCAGACTGAGAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACAGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCGGCAACATTGGCCCCTGTGGATGCTTTGGCGAGATATACCCAACTGAATAGTTTTCCTCTTCAACAAAAACAACAAACCGGGCATTTTGTCTTTGGATATTCATTATGCTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAATTGCTACTGGTGGAGTTGATTCCAATGCTGTGATCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738822" ref_strand="+" ref_description="SGN-E738822 [LC15AD01]">
      <seq>actctttctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgcaacattggcccctgtggatgctgtggcgagatatacccaactgaatagttttccccttcacaaaaccaacaagccgggcattttgtctctggatattcactatgctaaggacataattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85131" stop="81307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84831" g_stop="84760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="79" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="165" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="237" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="300" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="387" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="529" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="651" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81736" g_stop="81620" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="768" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E738822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84831" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG</genome_strand>
        <mrna_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576329" ref_strand="+" ref_description="SGN-E576329 [59529]">
      <seq>tctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaaccaaaggacaaagcgacagataccgggcaacatttggcctctgtggatgcttttggcgacgatatacccaattgaatagtttcctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85147" stop="81617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84847" g_stop="84760" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="174" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="246" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="309" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="396" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="538" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="661" r_length="123" r_score="0.934"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81736" g_stop="81670" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="662" r_stop="731" r_length="70" r_score="0.791"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E576329" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84847" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAA-CAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACC-CGCAACA-TTGGCCCCTGTGGATGC-TGTGGCGA-GATATACCCAACTGAATAGTTTTCCCCTTC</genome_strand>
        <mrna_strand>TCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACCAAAGGACAAAGCGACAG.......................................................................................................................................................................................ATACCGGGCAACATTTGGCCTCTGTGGATGCTTTTGGCGACGATATACCCAATTGAATAG-TTTCCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315580" ref_strand="+" ref_description="SGN-E315580 [cTOA-22-I4]">
      <seq>tcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgangatgtgggccctgatggaaagaaaatcgccctgngatatcacactctgtcattgagactcttactgaaatgtatgctggtctttcacacaaaggaaaaaacgacagatacccgcaacattggccccctgtgatgctgtggcgagatataccaactgaatagttttcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85145" stop="81372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84845" g_stop="84760" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="172" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="244" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="307" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="394" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="536" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="656" r_length="120" r_score="0.943"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.982" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81736" g_stop="81672" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="720" r_length="64" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E315580" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84845" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTG-AATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCT</genome_strand>
        <mrna_strand>TCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGANGATGTGGGCCCTGATGGAAAGAAAA-TCGCCCTGNGATATCACACTCTGTCATTGAGACTCTTACTGAAATGT-ATGCTGGTCTTTCAC-ACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGCAACATTGGCCCCCTGTGATGCTGTGGCGAGATATA-CCAACTGAATAGTTTTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484749" ref_strand="+" ref_description="SGN-E484749 [cSTE-14-J18]">
      <seq>ctctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaagcgacagataccggcaacattggcctctgtggatgctttggcgagatatacccaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85142" stop="81385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84842" g_stop="84760" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="169" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="241" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="304" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="391" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="533" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="655" r_length="122" r_score="0.959"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81736" g_stop="81685" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="707" r_length="52" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E484749" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84842" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGA</genome_strand>
        <mrna_strand>CTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAGCGACAG.......................................................................................................................................................................................ATACCGGCAACATTGGCCTCTGTGGATGCTTTGGCGAGATATACCCAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480339" ref_strand="+" ref_description="SGN-E480339 [cSTD-13-H21]">
      <seq>cctcgctctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaaggggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatgangatacgggccctgatggaaagaaaattcgccctgngatatcacactctgtcattgagactcttactgaatgtnatgctgggtctttcacaacaaagggaaaagcgacagataccgggcacattggcctctgtggatgctttggcgagatataccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85153" stop="81390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84853" g_stop="84760" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="180" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="252" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="315" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="545" r_length="143" r_score="0.958"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="668" r_length="123" r_score="0.910"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81736" g_stop="81690" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="715" r_length="47" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E480339" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84853" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAA-GGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCT-GGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCA</genome_strand>
        <mrna_strand>CCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGANGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGNGATATCACACTCTGTCATTGAGACTCTTACTGAATGTNATGCTGGGTCTTTCACAACAAAGGGAAAAGCGACAG.......................................................................................................................................................................................ATACCGGGCACATTGGCCTCTGTGGATGCTTTGGCGAGATATACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602371" ref_strand="+" ref_description="SGN-E602371 [55350]">
      <seq>ctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaggcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcacaacaaaggaaaaaacgacagatacccgggcaacattggcccctgtgggatgctttggcgagatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85131" stop="81394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84831" g_stop="84760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="158" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="230" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="293" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="380" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="522" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="644" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="81736" g_stop="81694" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="690" r_length="46" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E602371" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84831" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCC--GCAACATTGGCCCCTGT-GGATGCTGTGGCGAGATATA</genome_strand>
        <mrna_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAGGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTGCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCCGGGCAACATTGGCCCCTGTGGGATGCTTTGGCGAGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456300" ref_strand="+" ref_description="SGN-E456300 [cSTS-29-I23]">
      <seq>attgaccggcagatgaacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagccactacagcagttggtactactgctgtaagcaatgggaaaagagctgctgaggatgaggatacgggccctgatggaaagaaaattcgccctgngatatcacactctgtcattgagactcttactgaatgtnaatgctggtctttcacaacaaaggaaaaaacgacagataccggcaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="84059" stop="81617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83759" g_stop="83720" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="105" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="192" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="334" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="82041" g_stop="81920" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="457" r_length="123" r_score="0.943"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="81736" g_stop="81724" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="470" r_length="13" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E456300" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83759" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81920"/>
          <exon e_start="81736" e_stop="81724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGA-CGGCAGATG-ACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGT-AATGCTGGTCTTTCACAACAAAGGAAAAAACGACAGGTAAACTCTACTACACATGTTTGGAGGACTTTATAAGTAGTAATTTCCCTCAATTCTCTTCTGATATTGCATCACTCCTTTCTTTAGACTAATGTAAGTTGGTGTTATATGAGCACTTCTCTTGCTGCCGCTCCTCCCAGCTAGATGAAAATTGATTATTTTTCACTTTCTTTTACCTCCTAGATACCCGCAACAT</genome_strand>
        <mrna_strand>ATTGACCGGCAGATGAACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTGCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATGAGGATACGGGCCCTGATGGAAAGAAAATTCGCCCTGNGATATCACACTCTGTCATTGAGACTCTTACTGAATGTNAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG.......................................................................................................................................................................................ATACCGGCAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339667" ref_strand="+" ref_description="SGN-E339667 [cTOE-16-G21]">
      <seq>tccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtctttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85130" stop="81640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84830" g_stop="84760" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="157" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="229" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="521" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81940" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="623" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E339667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84830" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCAC</genome_strand>
        <mrna_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329103" ref_strand="+" ref_description="SGN-E329103 [cTOC-24-D18]">
      <seq>tccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85130" stop="81643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84830" g_stop="84760" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="157" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="229" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="292" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="379" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="521" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81943" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="620" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E329103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84830" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTT</genome_strand>
        <mrna_strand>TCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721925" ref_strand="+" ref_description="SGN-E721925 [FC15CG09]">
      <seq>tcggccgaattgctcgctctcactctgcctcttctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactactgctgtaagcaacgggaaaagagttgccgaggatgaggatgtgggccctgatggaaagaaaattcgccctgggatatcacactctgtcattgagactcttactgaatgtaatgctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85152" stop="81645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84864" g_stop="84760" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="191" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="263" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="413" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="555" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="81945" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="652" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E721925" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84864" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="81945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCT</genome_strand>
        <mrna_strand>TCGGCCGAATTGCTCGCTCTCACTCTGCCTCTTCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG........................................................................................TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469765" ref_strand="+" ref_description="SGN-E469765 [cSTB-14-K13]">
      <seq>ctcgctctcactctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggtttcttgcccaggctgaaagacaaatacccatggcagccactacagcagctggtactactgctgtaagcaatgggaaaagagctgctgaggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85152" stop="81828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84852" g_stop="84760" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="179" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="251" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="314" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="401" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82130" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="543" r_length="142" r_score="0.972"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="82041" g_stop="82030" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="555" r_length="12" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E469765" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84852" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82130"/>
          <exon e_start="82041" e_stop="82030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAGGTAATTCTTTTTTACGCATTTATATGTACCTTGTACCATCTTCTTTATCCCAACCTTAATTATTCATGTTATCAACTTATATCGATAGTTGCCGAGGATG</genome_strand>
        <mrna_strand>CTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTTCTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGCTGGTACTACTGCTGTAAGCAATGGGAAAAGAG........................................................................................CTGCTGAGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335393" ref_strand="+" ref_description="SGN-E335393 [cTOE-2-G18]">
      <seq>catcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttggcactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85137" stop="81852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84837" g_stop="84760" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="164" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="236" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="299" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82152" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="506" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E335393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84837" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACT</genome_strand>
        <mrna_strand>CATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200582" ref_strand="+" ref_description="SGN-E200582 [cLEB-8-P22]">
      <seq>gcacgagtctgcatcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagggggttacttgcccaggctgaaagacaaatacccatggcagccactacagcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85146" stop="81860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84849" g_stop="84760" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="175" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="247" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="310" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82160" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="509" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E200582" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84849" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTG</genome_strand>
        <mrna_strand>GCAC-GAGTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582029" ref_strand="+" ref_description="SGN-E582029 [7662]">
      <seq>ctccttttgtgctacttaaaccctagctctacctctttgcctttctctctactttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgagagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgattaaaactggcaagatagttaagagccccgacgctgtacaggctgctagcattcctgggatgttgggaatgttccaacatagaatgggatggcctgatgctgtcaagattttgcattggaacaatcaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaacgggatgaggcaagggggttgcttgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85131" stop="81902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84831" g_stop="84760" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="159" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="232" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="299" r_length="67" r_score="0.873"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="388" r_length="89" r_score="0.931"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82202" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="459" r_length="71" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E582029" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E582029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84831" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCT-CTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTG-TTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAA-A-CCCCGAC-CTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAA-ATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAA-ATTTTGCATTGGAACAA-CAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAA-GGGATGAGGCAAGGGGGTTACTTGCCC</genome_strand>
        <mrna_strand>CTCCTTTTGTGCTACTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTACTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAGAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGATTAAAACTGGCAAG......................................................................................................................ATAGTTAAGAGCCCCGACGCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAACATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAGATTTTGCATTGGAACAATCAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAACGGGATGAGGCAAGGGGGTTGCTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561617" ref_strand="+" ref_description="SGN-E561617 [17705]">
      <seq>cacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaggcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="84938" stop="81915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84776" g_stop="84760" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="103" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="175" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="238" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="325" r_length="87" r_score="0.977"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="382" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E561617" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84776" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGG</genome_strand>
        <mrna_strand>CACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAGGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303071" ref_strand="+" ref_description="SGN-E303071 [cLEW-26-L7]">
      <seq>atcagctccttttgtgctgcttaaaccctagctctacctctttgcctttctctctctgtcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattgcatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttgcagggtaattgcaaggctgaaaaaggaaagggatgaggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85136" stop="81917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84836" g_stop="84760" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="163" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="235" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="298" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="385" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="82271" g_stop="82217" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="440" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E303071" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84836" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
          <exon e_start="82271" e_stop="82217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAGGTGAAGGAAGTAGCCTACTACATACTATTAAGCATCTGGAAAACTTTATTCTGGGGAGTTTGTCCTAGAAATCATATTTGATAACGTAGATGCAATGATTAGTTTTATGAAAAATTGAGTGCTTGCTTAGACAGTATGGCCATTAGGGAAGCCTCATATACTATAGATGGAAGAAGAGAGAGGAAGTACAAGTTATAAAATTCTGAAACTAGGTGGTGCAAAGTTAGAAGTTCTCTGCTTGTGCTATTTTTCCATTGTAATGTCATTTTTTGTTTCAAGTTTCCTGTTTTGTTTAACGAGAATCTTTTATTTCTATGGTTAAACCCAACATCCTCTATTCCCTTCGTAGGATCTCAACAGTGGATTTTTTCCGCGCTGGCTCCTTTTGTGACTCCAACTCCAACTTTATATTGGGGATTGGGAGATCCATATTCCTTGCTACCAAGCTCTCTCTCTTTTTTCCTAATGGAAGAAAATATTTAAGCATAGGAAAGAGGCAAGTATTGTCCTATATTGCCTGTAAAGCGACAGGAACTTTTTCTTATGACATGAGTTCTCCTGTAAAGAATAACACAATCAAGACTAGTAAGATTGGTTACACATACTGGTGTCTGTAAGTGTCAAAATTGTAGGAATAAGCATCCTAATATTTGGAATTGGTGCTTATTGAGCCAATAATCAGGTTCTAGATTCACTGTACATTTTGTGTTTGCCATCTCTTCTATTTTTTGTCCTGTCTTTCTATTCCAGAGTTTCTCTTATCAATTTCCAAAGTTGACGTCTGGACAATTTTCTCCCTGTTCTCTCATTGTTCATTCATCTGGTAGCTGCTTGTCCATATTACATTGTTCTGCGTGCTTCATATACTACATGCCTTGCTAATTTCATGTCTTATCTTGGCAGCATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAA</genome_strand>
        <mrna_strand>ATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTGTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445819" ref_strand="+" ref_description="SGN-E445819 [cSTA-18-P7]">
      <seq>cttttgtgctgcttaaaccctagctctacccctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtaatttctaagaagtccggactccttttcgagaagcgttgaattgaaagacatatctctgattatggcaaatgccctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcancatgatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85128" stop="82876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84828" g_stop="84760" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="155" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="227" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="290" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="377" r_length="87" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E445819" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84828" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>CTTTTGTGCTGCTTAAACCCTAGCTCTACCCCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAATTTCTAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTGAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGCCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366447" ref_strand="+" ref_description="SGN-E366447 [cLPT-1-N4]">
      <seq>ttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcancatgatgctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85127" stop="82876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84827" g_stop="84760" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="154" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="226" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="289" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E366447" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84827" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365956" ref_strand="+" ref_description="SGN-E365956 [cLPT-11-E4]">
      <seq>ttttgtgctgcttaaaccctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85127" stop="82875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84827" g_stop="84760" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="154" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="226" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="289" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="376" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E365956" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84827" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>TTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438742" ref_strand="+" ref_description="SGN-E438742 [cSTA-9-M20]">
      <seq>ctagctctacctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgaaaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacattatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagagctgagccatgctttatatcagcatgatgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85109" stop="82875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84809" g_stop="84760" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="136" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="208" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="271" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="358" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E438742" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84809" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>CTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAAAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATTATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACAACAATTACATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447003" ref_strand="+" ref_description="SGN-E447003 [cSTA-24-C19]">
      <seq>tatctctgattatggcaaatgtcctattactggagagccattgacggcagatgaccattatccctgttaaaactggcaagaaagttaaacccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggcctgatgctgtcaaattttgcattggaaccacaattacctactgcaaggcaagagctgagccatgctttatatcagcatgatgctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="84091" stop="82875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="80" r_length="73" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="144" r_length="64" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83261" g_stop="83175" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="231" r_length="87" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E447003" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGA-CATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAA-CCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</genome_strand>
        <mrna_strand>GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACCATTATCCCTGTTAAAACTGGCAAG......................................................................................................................AAAGTTAAACCCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGCCTGATGCTGTCAAATTTTGCATTGGAACCACAATTACCTACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338859" ref_strand="+" ref_description="SGN-E338859 [cTOE-21-K23]">
      <seq>cctctttgcctttctctctctttcaacaatgaactgttcaatttccggcgaggtgccggaggatccagtagtttcgaagaagtccggactccttttcgagaagcgtttaattgaaagacatatctctgattatggcaaatgtcctattactggagagccattgacggcagatgacatcatccctgttaaaactggcaagatagttaaaccccgacctgtacaggctgctagcattcctgggatgttgggaatgttccaaatagaatgggatggtctgatgctgtcaaattttgcattggaacaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="85100" stop="82916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84800" g_stop="84760" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84632" g_stop="84547" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="127" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83791" g_stop="83720" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="199" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83601" g_stop="83539" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="262" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83261" g_stop="83216" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="308" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E338859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84800" e_stop="84760"/>
          <exon e_start="84632" e_stop="84547"/>
          <exon e_start="83791" e_stop="83720"/>
          <exon e_start="83601" e_stop="83539"/>
          <exon e_start="83261" e_stop="83216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAAGTAAGCTTCACTTTCTCTCTCTATATCGCTATTTACTTTTTTTTTCTCTATGCACATTTTTCGTAATATAGATCTTTTTTTTTGCGTCTCTGATCTGTAGTTTTCACTGTTTTTTTTCTCATTGCAGTTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCTGTGAGTCTTTATCTCATTTTGTACTAATTTTGTTATTTACCTTCGTTTGTTAGTTTACTTATCTATGTTTGCTGTGTTATTTCCAATCCGTGTTTGTTATAGAGAGATATCTGTAATTTGTGTTGAATTGAGTAATAGCTTGAAAATTATCTGCATTTCCAGAATTTTAAACTCATTTTTGGTGTGTGCAGTGTGTGTTCTTTTAGCAGTAGGGTTTTTTATTTGATCTGTGTGGTCGATATTGTGGTTAAGTTTGAAGAGAAATGGATTTATGCCCGAGGTTGTTTCACGCGAGATGTAGGAAGGAGAAATTTGGAATAAGTATGGTGTTAAGGCGAACTGTGCAAGCTAGTTAGGGTTGGGTTATATTGATCCTCTACATTGATTTTTTTAATTTGTATGCGTTTCACTAAAAAAATTAGTTGTTTGTCTTTTGTATATTTAAGCCAGTGTAAATTTTGAGTTGCTGGTCTCTATCTTCCCTGTCTACACTCCTCACCTAATGGGTTCATAATAGCTAATAGAAACTTAAGTAGTGTCAACTGTCAACTCAGGCTTTTGTGAAAAGTGTAAAGGTTGAGCAGAAAGAACAGTATTTATGCAGCTTGATTGTAGGAGAATTTTTCAACTTGTCCGGTGGGAGTATTACCGTCATTTTTTGGTTAAGTGGTATTTTTGACCTTTAACTGAAGACAGCAACATGTTCTCAAGTGTATGTGTGTTTCTTAATCGGTTTGTTCTTTTGGTTGGTTCAGGATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAGGTAGTACTGTCTGAAACTTAAAATGTAATTTGCTTCTAATTTTCCCCGTATTAGCTTTACGGTATGATCTCACATGGGTTTACAACGTGAAGCTTACAATTATTGGTGCTTATTGCAGATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATAGTACGTGTTTTTGATCCTTGATTTTCTGCTTCCCATTTCTAAGGTTTGCTTAGTTCTTGAAGATTCCAAATAAAGCCTTATTACATATAATGAACCAAATTCAGCAGCATGATTTTCTAGTTCATTGTTGATCTCTTATTCTTTAGTCTAACTGGTTGTTTATCAAATAGCATTTTCATCACTTAATTCTTTACGTGGTGCGACTGCTAAACGAATTACCATTTATCTTGGAGCATTTGTTACATTGATGCTTCGTCTTAAATTCTTTTTCTCATAGGAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAAT</genome_strand>
        <mrna_strand>CCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA...............................................................................................................................TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG......................................................................................................................ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA.....................................................................................................................................................................................................................................................................................GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327772" ref_strand="+" ref_description="SGN-E327772 [cTOC-20-D21]">
      <seq>ggtttggtattcttcttctagaatcaagattcgtctaaaaacaggtattttgttgttggaggtgaaagtggtggatgaggtttcttccatgtggtatacttttgtagaagtaatttttatttctttaataaccaaagtttcttgcttttctttctctactttgttttaaaatagactttttgaaggactaattgtatatcttatctttgtttagtggggttgtcttgaaattggctaacattaagtatatctttatgtggggtttgttgtttctgaaggggattgaaagagcttatagcttgatctgcaaggtgaatttgaagtggggtttcatatttttttggagtgctggtggatttcggtctctttgtataaccgtgtttatactgtggaacgtgaaggaagaaagatcattttatctgatttctaatgtttaatcagcttggatgtggaatatggacaacagaaacatggactatgatgaacctattattgaacgtttattgcagcttgtgaacaacgaagaacaagcagaggagaatatttgtttgtcgacaagattagtagaagagttagaacctcagcacctacggagattagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="104896" stop="106663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105196" g_stop="105541" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105542" i_stop="106105" i_length="564">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.577" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106106" g_stop="106363" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="604" r_length="258" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E327772" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105196" e_stop="105541"/>
          <exon e_start="106106" e_stop="106363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAGGTGAGTGAGGAAGTTATTGAACTTTTGATTTTACTTCTGATGTTTGATGTTTAGTACTTTGCTTACTATTTATTGAACATGTTATGTTTGTATTTTTTGTGCAATTTGTCTAGGAGTTGTTGCAAACTTGCAATTGTTTATACTGTTTTTGTTGATTCTTGAAATGTAACTAGGATCTGCTTAAGCTTAATGAGATATATATATATAACACTGTTCATTCTTCTTTGTTCTTTCTTTTCACTGTTTGTATCTCTCCCAGCTATTGGGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAGGAGATTTGTTGCCAAAGATTTGATTTTTTTTTCTTCTGTTTTTCAGCTGTTACAGTCTGAGACTTGTTTTGTAGACGGGGAATCTTAGTAGCTAAGTTGATTGGCTACCTGAGTTCGATTCCCCATTTTGTAATCTTGTTCACCTACAAAACACTTGTTTTGTATACCCTCTTGTAGCTCATTATTTGATCAAGTTTTAATCTTTTGAGTAATTTAACTTGTAAAGATTCTGTCTTCTGATTTATGCATAAAAATTCTTGTAGTGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAA</genome_strand>
        <mrna_strand>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGGTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAACCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTATATCTTTATGTGGGGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTATAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAACGTGAAGGAAGAAAGATCATTTTATCTGATTTCTAATGTTTAATCAGCTTGGATGTGGAATATGGACAACAGAAACATGGACTATGATGAACCTATTATTGAACGTTTATTGCAGCTTGTGAACAACGAAGAACAAGCAGAGGAGAATATTTGTTTGTCGACAAGATTAGTAGAAGAGTTAGAACCTCAGCACCTACGGAGATTAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E478921" ref_strand="+" ref_description="SGN-E478921 [cSTD-7-P5]">
      <seq>gttattttgtagttggaggtgaaagtggtggatgaggtttcttccatgtggggattggaagagcataaagcttgatctgagtggtgaatttgaagtggggtttcatttttttggagcctatttccccaaattagaattgggacgatacaagtgctggtggattttggtctctttgtataaaccgtatttatatcgcagaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="104939" stop="106909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105239" g_stop="105288" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105289" i_stop="105473" i_length="185">
            <donor d_prob="0.900" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105474" g_stop="105541" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="116" r_length="66" r_score="0.897"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105542" i_stop="105806" i_length="265">
            <donor d_prob="0.978" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105807" g_stop="105842" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="151" r_length="35" r_score="0.556"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105843" i_stop="106105" i_length="263">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.577" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106106" g_stop="106608" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="654" r_length="503" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E478921" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105239" e_stop="105288"/>
          <exon e_start="105474" e_stop="105541"/>
          <exon e_start="105807" e_stop="105842"/>
          <exon e_start="106106" e_stop="106608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAGGTGAGTGAGGAAGTTATTGAACTTTTGATTTTACTTCTGATGTTTGATGTTTAGTACTTTGCTTACTATTTATTGAACATGTTATGTTTGTATTTTTTGTGCAATTTGTCTAGGAGTTGTTGCAAACTTGCAATTGTTTATACTGTTTTTGTTGATTCTTGAAATGTAACTAGGATCTGCTTAAGCTTAATGAGATATATATATATAACACTGTTCATTCTTCTTTGTTCTTTCTTTTCACTGTTTGTATCTCTCCCAGCTATTGGGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAGGAGATTTGTTGCCAAAGATTTGATTTTTTTTTCTTCTGTTTTTCAGCTGTTACAGTCTGAGACTTGTTTTGTAGACGGGGAATCTTAGTAGCTAAGTTGATTGGCTACCTGAGTTCGATTCCCCATTTTGTAATCTTGTTCACCTACAAAACACTTGTTTTGTATACCCTCTTGTAGCTCATTATTTGATCAAGTTTTAATCTTTTGAGTAATTTAACTTGTAAAGATTCTGTCTTCTGATTTATGCATAAAAATTCTTGTAGTGCTGGTGGATTTCGGTCTCTTTGTAT-AACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTC</genome_strand>
        <mrna_strand>GTTATTTTGTAGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTG.........................................................................................................................................................................................GGGATTGGAAGAGCATAAAGCTTGATCTGAGTGGTGAATTTGAAGTGGGGTTTC--ATTTTTTTGGAG.........................................................................................................................................................................................................................................................................CCTATTTCCCCA-AATTAGAATTGGGACGATACAAG.......................................................................................................................................................................................................................................................................TGCTGGTGGATTTTGGTCTCTTTGTATAAACCGTATTTATATCGCAGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441917" ref_strand="+" ref_description="SGN-E441917 [cSTA-31-F19]">
      <seq>cgaggcgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="105848" stop="106947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106141" g_stop="106647" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E441917" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106141" e_stop="106647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACT</genome_strand>
        <mrna_strand>CGAGGC-GCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441916" ref_strand="+" ref_description="SGN-E441916 [cSTA-31-F19]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgcaataactggtagtaagagtatgctgaacattttaaagagtcctttacttaatcaatttggatctgttaactgtactgttgattctggaaagggaaattacatgacagtgaagaaagcagtttttncgatttcatgagctctcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="105848" stop="107118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106147" g_stop="106818" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E441916" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106147" e_stop="106818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCG</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCAATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCTTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGGAAAT-TACATGACAGTGAAGAAAGCAGTTTTTNCGATTTCATGAGCTCTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418486" ref_strand="+" ref_description="SGN-E418486 [STM-27-L13]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgcaataactggtagtaagagtatgctgaacattgtaaagagtcctttacttaatcaatttggatctgttaactgtactgttgattctggaaaggaaaatatacatgacagtgaagaagcaacgttttccgatttcatgagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="105848" stop="107113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106147" g_stop="106813" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E418486" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106147" e_stop="106813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTC</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCAATAACTGGTAGTAAGAGTATGCTGAACATTGTAAAGAGTCCTTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATACATGACAGTGAAGAAGCAACGTTTTCCGATTTCATGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418427" ref_strand="+" ref_description="SGN-E418427 [STM-27-B9]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatagaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctacgcggagtggattcttggtgcaataactggtagtaagagtatgctgaacattttaaagagttctttacttaataattttggatctggtaactgtactgttgattctggaaaggaaaatatacatgacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="105848" stop="107083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106147" g_stop="106783" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E418427" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106147" e_stop="106783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGA</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATAGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTACGCGGAGTGGATTCTTGGTGCAATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTTCTTTACTTAATAATTTTGGATCTGGTAACTGTACTGTTGATTCTGGAAAGGAAAATATACATGACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418472" ref_strand="+" ref_description="SGN-E418472 [STM-27-J13]">
      <seq>cgcggaaggtgaaggaagaaagttcatttacctgctttctaatgtttaatcaccttggaggtgcaatatggaacgcagaaacatggacaaggatggacctaataaagaaggtttattgcagtttgtgaacaaggaagaacaagcagaggagaatagttgtttgtcgacaagattaatagaagagttagaaccacagcacctacttagattaggaaacccgcgctttacaggaaattgcactcagaaattgttctttcatagttctcttggcttacaaaataagcttccaaagcatataataagttttgacgaaagatacttccttcgctgccttgaattggtacacatacattccacatgtaacttctcttcaaagatgcaaattttatcaaagagttcaggttcaagagaggttagaaatgaaaatctctgcactaatggtaatctggctatcgaatgccctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgcataactggtagtaagagtatgctgaacattttaaagagtcctttacttaatcaatttggatctgttaactgtactgntgattctggaaaggaaaatatacatgacagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="105848" stop="107083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106147" g_stop="106783" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E418472" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106147" e_stop="106783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGA</genome_strand>
        <mrna_strand>CGCGGAAGGTGAAGGAAGAAAGTTCA-TTTACCTGCTTTCTAATGTTTAATCACCTTGGAGGTGCAATATGGAACGCAGAAACATGGACAAGGATGGACCTAATAAAGAAGGTTTATTGCAGTTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACTTAGATTAGGAAACCCGCGCTTTACAGGAAATTGCACTCAGAAATTGTTCTTTCATAGTTCTCTTGGCTTACAAAATAAGCTTCCAAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACATTCCACATGTAACTTCTCTTCAAAGATGCAAATTTTATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCTGCACTAATGGTAATCTGGCTATCGAATGCCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGC-ATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCTTTACTTAATCAATTTGGATCTGTTAACTGTACTGNTGATTCTGGAAAGGAAAATATACATGACAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726439" ref_strand="+" ref_description="SGN-E726439 [LA11DC05]">
      <seq>aagatacttccttcgctgccttgaattggtacacatacactccacatgtaacttctcttcaaagatgcaaattatatcaaagagttcaggttcaagagaggttagaaatgaaaatctccacactaatggtaatctggcgaccgaatgtcctcaaactgtggggattgagtcaagttatgtccctgactcctccgcggagtggattcttggtgctataactggtagtaagagtatgctgaacattttaaagagtcccttacttaatcaatttggatctgttaactgtactgttgattctggaaaggaaaatataaatgacagtgaagaaggaagtttttctgatttcatgagctctcccggtggttttagtgtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="106160" stop="107591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106460" g_stop="107291" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="832" r_length="832" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E726439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106460" e_stop="107291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATC</genome_strand>
        <mrna_strand>AAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728523" ref_strand="+" ref_description="SGN-E728523 [LA18AD08]">
      <seq>gtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacaaaaagttggcaaagaaagtaacagatgtgttcagaactagtcagtcttataagcagagaagcttatccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaaagtaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctaaaacagacatgctgggccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="106530" stop="108025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106830" g_stop="107725" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="895" r_length="895" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E728523" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106830" e_stop="107725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTC</genome_strand>
        <mrna_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAAGTAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTA-AAACAGACATGCTGGGCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725867" ref_strand="+" ref_description="SGN-E725867 [LA08CC07]">
      <seq>gtcagttcagcacagaagctacagaaggagatgacagatcatggatctgagcatgtacacagaagggttctttctgtatctagtacagcttcgacatgctcagatcaatcatgtctttcagcagctgcccctatttctcaaggaatgttccagaggagatggaaaaatggtttaccacattatgtcttttccatagatggtaaaaaggaagtttatgtagctgatctgctggagattgactcacctgatgataagtttctcgattatgtttacacatttcattcaagacaagaaagcaaaaaggaatgcgccttctctgcaagggaatcacaacttgtaggtaaaatgactgtgtcaacttcagtgacactcagcccaaccaagttggagattatggagacgcgatttgttgtgtttggttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacanaaagttggcaaagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="106530" stop="107623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106830" g_stop="107323" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E725867" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106830" e_stop="107323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGT</genome_strand>
        <mrna_strand>GTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACANAAAGTTGGCAAAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702829" ref_strand="+" ref_description="SGN-E702829 [FA19DC05]">
      <seq>gttccatggatcaatatatggatgagatacaaacaagtcatatcctcaggaagaacaaaaagttggcaaagaaagtaacagatgtgttcagaactagtcagtcttataagcagagaagcttatccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacctttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagtaagatgacaccaagtatggtatctgttgttatagctctctttctttaaagaagtcagacaaatcgaccattagaaatggntcaaagatataacatatgattgtctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="106948" stop="108562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107248" g_stop="107873" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107984" g_stop="108262" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="904" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E702829" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107248" e_stop="107873"/>
          <exon e_start="107984" e_stop="108262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTT</genome_strand>
        <mrna_strand>GTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACCTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTT-AAAGAAGTCAGACAAATCGACCATTAGAAATGGNTCAAAGATATAACATATGATTGTCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688899" ref_strand="+" ref_description="SGN-E688899 [t3_tus_55_E15]">
      <seq>tcccagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgcccaattttgagctggctgccgttgttaccagagatcctcttaatgacagctcccaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="107070" stop="108422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107370" g_stop="107873" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107984" g_stop="108122" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="643" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E688899" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107370" e_stop="107873"/>
          <exon e_start="107984" e_stop="108122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCC</genome_strand>
        <mrna_strand>TCCCAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCCAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCCAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551101" ref_strand="+" ref_description="SGN-E551101 [TUS-55-E15]">
      <seq>tcccagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgcccaattttgagctggctgccgttgttaccagagatcctcttaatgacagctcccaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="107070" stop="108403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107370" g_stop="107873" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107984" g_stop="108103" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="624" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E551101" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107370" e_stop="107873"/>
          <exon e_start="107984" e_stop="108103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATT</genome_strand>
        <mrna_strand>TCCCAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCCAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCCAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260774" ref_strand="+" ref_description="SGN-E260774 [cLEG-55-M5]">
      <seq>ccaagttcgggggaacaagcgccattcttgaagatgcttcgtggacgccatccatagatatgtatgatgattattattcatgcggcaatgctcttttagatcagcagattccgccaaattttgagctggctgccgttgttaccagagatcctcttaatgacagctccaaggaggcagagaagggtggctggggtatgaagtttctcaagaaatctccgactggaagtaaaaatgcacctcctgagatatcggtggaatgtcgttcacgtggcaccagtgattgctcaacaagcacagatgttataattccaagtggttttcatggtggacctagaagcagacatgctgggccgtcaagcctgttggagcggtggagctctggtgggcactgtgattgtggaggctgggatctcgggtgccccctcacagttcttaaaactgggaatgaagcttcatcacaaactacatccggggactgtcaaacttttgatctctatatacagggtttgaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtctttcgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="107071" stop="108452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107371" g_stop="107873" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107984" g_stop="108152" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="672" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E260774" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107371" e_stop="107873"/>
          <exon e_start="107984" e_stop="108152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTA</genome_strand>
        <mrna_strand>CCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613184" ref_strand="+" ref_description="SGN-E613184 [62955]">
      <seq>tgattgtggaggctgggatctcgggtgccccctcacagttcttaacactggaaatgaagcttcatcacagactacatctggagactgtcaaacttttgatctctatatacagggttcaaaacaaagtgcaccagtcatgaaaatgtcgaatattcatgatggtttgtattacatccattttcattcgactctatcagctttgcagtcttttgccatagctgctgctttcattcatagacatagtcctttcctacgaccgaaactgtacaggaagtgaagtaagatgacacaaagtatggtatctgttgttatagttctctacttttaaaagaagtcagacaaatcgaccattagaaatggttcgaagatataacatctgattgtctctcatgttcattaatttatcttagctgctagattattagataggaaattcgtttgttagctcagattattattttgttagtgtaatgaatgatacagtttagaagcagcggtcagtgtacaaatcgtctattggatggggggacatccatttgtaccgttgattaagttactgaaagtcgaaacacattgatttttgagtggtttgttgatcctttgatctttagtgcaactttcaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="107462" stop="108781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107762" g_stop="107873" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110">
            <donor d_prob="0.963" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107984" g_stop="108481" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="627" r_length="515" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E613184" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107762" e_stop="107873"/>
          <exon e_start="107984" e_stop="108481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAGGTCTATCTCATTATAAGTTTTTGTTCTCTATGTTCTTCAAGCAACTATGCATTTAAATATGTGGAATGTTGAAATGTCACTAACCGATTTTCTTTTCCACGATTTTGCAGGGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTG--TCTC----TC------TTAGC-T-G--G-TAGAGTATTAGATAGGAGATTCGTTTGTTAGCTCACATTATCATTTTGTTAGTGTAATGAATGATACACTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTAATGAAAGTCGAAACATATTGATTCTTGAGTGGTTTGTTGATCCTTTGATCTCTAGTGCAACTTTCAGGCAT</genome_strand>
        <mrna_strand>TGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAACACTGGAAATGAAGCTTCATCACAGACTACATCTGGAGACTGTCAAACTTTTGATCTCTATATACAG..............................................................................................................GGTTCAAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTTGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACAAAGTATGGTATCTGTTGTTATAGTTCTCTACTTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCGAAGATATAACATCTGATTGTCTCTCATGTTCATTAATTTATCTTAGCTGCTAGATTATTAGATAGGAAATTCGTTTGTTAGCTCAGATTATTATTTTGTTAGTGTAATGAATGATACAGTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTACTGAAAGTCGAAACACATTGATTTTTGAGTGGTTTGTTGATCCTTTGATCTTTAGTGCAACTTTCAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338495" ref_strand="+" ref_description="SGN-E338495 [cTOE-15-D24]">
      <seq>taatgtaccgtactttcaggatccaaaaatgtcgaagcgagggcgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121642" stop="124718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121942" g_stop="121982" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121983" i_stop="122073" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122074" g_stop="122358" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="326" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="368" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124286" g_stop="124418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="501" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E338495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121942" e_stop="121982"/>
          <exon e_start="122074" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTG</genome_strand>
        <mrna_strand>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAG...........................................................................................GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462918" ref_strand="+" ref_description="SGN-E462918 [cPRO-13-G17]">
      <seq>caaaaatgtcgaagcgagggcgtggagggtctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaattgtgctgataacactggggcgaagaacctttacattatctcagtgaagggtataaagggtaggttgaatcggttgccatctgcttgtgtaggtgatatggtgatggctactgtcaagaaagggaaacctgatttaaggaagaaagtgatgcctgctgtcattgttagacaacgcaaaccttggcgacgaaaggatggtgttttcatgtactttgaggataatgctggtgtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactctgaactactaagagttaacctgcagattttgataccttgtatttgtaagtgctgttattgtcacatatataaacaaatgcagcaatgttgtattgctctgagatttaaaagttcatataatacccacttatttgctactaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121665" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121965" g_stop="121982" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121983" i_stop="122073" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122074" g_stop="122358" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="303" r_length="285" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="345" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124286" g_stop="124509" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="573" r_length="228" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="584"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E462918" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121965" e_stop="121982"/>
          <exon e_start="122074" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATGTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAA-GAGT--TAGTTAACCTGCAG-TTTTGATACCTTTTATTTG-GAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CAAAAATGTCGAAGCGAG...........................................................................................GGCGTGGAGGGTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAATTGTGCTGATAACACTGGGGCGAAGAACCTTTACATTATCTCAGTGAAGGGTATAAAGGGTAGGTTGAATCGGTTGCCATCTGCTTGTGTAGGTGATATGGTGATGGCTACTGTCAAGAAAGGGAAACCTGATTTAAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGCAAACCTTGGCGACGAAAGGATGGTGTTTTCATGTACTTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTCTGAACTACTAAGAGTTAACCTGCAGATTTTGATACCTTGTATTTGTAAGTGCTGTTATTGTCACATATATAAACAAATGCAGCAATGTTGTATTGCTCTGAGATTTAAAAGTTCATATAATACCCACTTA-TTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404348" ref_strand="+" ref_description="SGN-E404348 [PPC-13-M12]">
      <seq>gtcgaagcgagggcgtggagggtctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaattgtgctgataacactggggcgaagaacctttacattatctcagtgaagggtataaagggtaggttgaatcggttgccatctgcttgtgtaggtgatatggtgatggctactgtcaagaaagggaaacctgatttaaggaagaaagtgatgcctgctgtcattgttagacaacgcaaaccttggcgacgaaaggatggtgttttcatgtactttgaggataatgctggtgtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactctgaactactaagagttaacctgcagattttgataccttgtatttgtaagtgctgttattgtcacatatataaacaaatgcagcaatgttgtattgctctgagatttaaaagttcatataatacccacttatttgctactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121772" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121972" g_stop="121982" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121983" i_stop="122073" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122074" g_stop="122358" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="296" r_length="285" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="338" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124286" g_stop="124509" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="566" r_length="228" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="579"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E404348" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E404348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121972" e_stop="121982"/>
          <exon e_start="122074" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAA-GAGT--TAGTTAACCTGCAG-TTTTGATACCTTTTATTTG-GAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>GTCGAAGCGAG...........................................................................................GGCGTGGAGGGTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAATTGTGCTGATAACACTGGGGCGAAGAACCTTTACATTATCTCAGTGAAGGGTATAAAGGGTAGGTTGAATCGGTTGCCATCTGCTTGTGTAGGTGATATGGTGATGGCTACTGTCAAGAAAGGGAAACCTGATTTAAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGCAAACCTTGGCGACGAAAGGATGGTGTTTTCATGTACTTTGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTCTGAACTACTAAGAGTTAACCTGCAGATTTTGATACCTTGTATTTGTAAGTGCTGTTATTGTCACATATATAAACAAATGCAGCAATGTTGTATTGCTCTGAGATTTAAAAGTTCATATAATACCCACTTA-TTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614721" ref_strand="+" ref_description="SGN-E614721 [64512]">
      <seq>tgagcgagggcgtggagggtctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaattgtgctgataacactggggcgaagaacctttacattatctcagtgaagggtataaagggtaggttgaatcggttgccatctgcttgtgtaggtgatatggtgatggctactgtcaagaaagggaaacctgaattgaggaagaaagtgatgcctgctgtcattgttagacaacgcaaaccttggcgacgaaaggatggtgttttcatgtactttgaagataatgctggtgtgattgtgaatcccaaaggtgaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttaacctggagattttgataacttttatttggaagtgctgttattgtcacatatacaaacaaatgcagcaatgttgtattgctctgagattcaaanattcatataatacccacttatttgctacttaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121772" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121975" g_stop="121982" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121983" i_stop="122073" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122074" g_stop="122358" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="293" r_length="285" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="335" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124286" g_stop="124512" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="559" r_length="224" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E614721" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121975" e_stop="121982"/>
          <exon e_start="122074" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAG-TTTTGATACCTTTTATTTGG-AGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATA</genome_strand>
        <mrna_strand>TGAGCGAG...........................................................................................GGCGTGGAGGGTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAATTGTGCTGATAACACTGGGGCGAAGAACCTTTACATTATCTCAGTGAAGGGTATAAAGGGTAGGTTGAATCGGTTGCCATCTGCTTGTGTAGGTGATATGGTGATGGCTACTGTCAAGAAAGGGAAACCTGAATTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGCAAACCTTGGCGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTGTGATTGTGAATCCCAAAGGTGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACT-A-AG--AGTTAACCTGGAGATTTTGATAACTTTTATTTGGAAGTGCTGTTATTGTCACATATACAAACAAATGCAGCAATGTTGTATTGCTCTGAGATTCAAANATTCATATAATACCCACTTA-TTTGCTACTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735157" ref_strand="+" ref_description="SGN-E735157 [LB14CD04]">
      <seq>agcgagggcgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121772" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121977" g_stop="121982" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121983" i_stop="122073" i_length="91">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122074" g_stop="122358" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="291" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="333" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124286" g_stop="124509" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="557" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="592"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E735157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121977" e_stop="121982"/>
          <exon e_start="122074" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAGGTCAGTATACTTTATGTTGCTTTCAAATTCAGATGATTGTTCTTAATTATCTTCAATTTTCCCTAATTTTTTTTTGAAAAATAATGTTTAGGGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>AGCGAG...........................................................................................GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549903" ref_strand="+" ref_description="SGN-E549903 [TUS-6-G23]">
      <seq>cccgggctgcaggattccgcccagggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121766" stop="124804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122074" g_stop="122358" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="304" r_length="285" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="346" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124286" g_stop="124504" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="565" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E549903" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122074" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCT</genome_strand>
        <mrna_strand>CCCAGGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320827" ref_strand="+" ref_description="SGN-E320827 [cTOB-27-B3]">
      <seq>cgtggaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgcaagtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagactacgtcaaccttggagactaaaggatggtgttttcatgtactttgaacataatgctggagtgattgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121776" stop="124399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122076" g_stop="122358" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124099" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="305" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E320827" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122076" e_stop="122358"/>
          <exon e_start="124078" e_stop="124099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAA</genome_strand>
        <mrna_strand>CGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGCAAGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACTACGTCAACCTTGGAGACTAAAGGATGGTGTTTTCATGTACTTTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549865" ref_strand="+" ref_description="SGN-E549865 [TUS-6-G22](-)">
      <seq>gaggttctgccggaaacaaattccggatgtcactgggtttaccggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtaggctctaagattttaagtcatatatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121780" stop="124759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122080" g_stop="122358" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="321" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124286" g_stop="124491" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="523" r_length="202" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E549865" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122080" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACC</genome_strand>
        <mrna_strand>GAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTA-GGCTCTAAGATTT-TAAG-TCATAT-ATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243802" ref_strand="+" ref_description="SGN-E243802 [cLED-35-B12]">
      <seq>aggttctgccggaaacaaattccggatgtcactgggtttaccggcggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaagtgatatgggaatggctactgnaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121781" stop="124394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122081" g_stop="122358" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124094" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="295" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E243802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122081" e_stop="122358"/>
          <exon e_start="124078" e_stop="124094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATT</genome_strand>
        <mrna_strand>AGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGCGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAAGTGATATGGGAATGGCTACTGNAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349217" ref_strand="+" ref_description="SGN-E349217 [cTOS-2-O8]">
      <seq>cggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121822" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122122" g_stop="122358" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="279" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124286" g_stop="124509" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="503" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E349217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122122" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349960" ref_strand="+" ref_description="SGN-E349960 [cTOS-4-A7]">
      <seq>cggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121822" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122122" g_stop="122358" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="279" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124286" g_stop="124509" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="503" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E349960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122122" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352487" ref_strand="+" ref_description="SGN-E352487 [cTOS-9-M9]">
      <seq>cggtggcggcgacggtgaactgtgctgataacactggagcgaagaacctttacatcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121822" stop="124812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122122" g_stop="122358" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="279" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124286" g_stop="124509" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="503" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="514"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E352487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122122" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</genome_strand>
        <mrna_strand>CGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713720" ref_strand="+" ref_description="SGN-E713720 [FB09BH01]">
      <seq>catcatttcagtaaagggtataaagggtaggttgaatcggttaccatctgcttgtgtaggtgatatggtaatggctactgtaaagaaaggtaaacctgatttgaggaagaaagtgatgcctgctgtcattgttagacaacgtaaaccttggagacgaaaggatggtgttttcatgtactttgaagataatgctggagtgattgtgaatcccaaaggagaaatgaaaggttctgctatcactggtccaattggaaaggagtgtgctgatctatggccaaggattgctagtgcagctaatgcaattgtctgaactactaagagttagttaacctgcagttttgataccttttatttggagtgctgttattgtcatatatacaaacaaatgcagcaatgttgtattgctctaagatttataagttcatataatacccacttattttgctactaaatatcactgtcatttacttttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="121874" stop="124832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122174" g_stop="122358" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124078" g_stop="124119" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="227" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124286" g_stop="124531" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="473" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="485"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E713720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122174" e_stop="122358"/>
          <exon e_start="124078" e_stop="124119"/>
          <exon e_start="124286" e_stop="124531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAGGTAAATATTTTTCTGCTAGCTTAAGGATTTGAGCTGAGATTTTTGGTTGTTATGTGATTTGAGCTGCTTGTTATTGTGTTCTTAGCTCGCGTTTTTAATTTATATGAATTATGTGAATCAACAACAGATTTGGTGTCATTTGATTTTATAGTAGTATGTTGTGAAGTATCTATATGAAATGATTATAAAAATGTGATCTTTTGAGAAAATTAACATTAGTTGGTGTACACATTGAGGTTTTGTGGATATCAATCTATCAGAGTTACTCTAGGGTGATTGGATTTCCTTGCTAATATAGTTATTCATACATTTAGCTTTGTTCATTTCCCTGAATTTGAAGCAGTGAGTAGTTATTCCATAAGTTTTGCTGGTTAGGGTGTGGTGCAATTATCCAGTGATCTGTTTCTGGACTTGGTATTCGTTCTTGTTTTAGTAGAAGTAGTGTGCGAATGTGAGCTGGTTTGACAGTATAATCATCCAATTTTTACCTTGTGCATGTGTCAAGTCATAAGGGTGAGTTGGTCTTTTGGATACGAGCTTATCTGCACTTGTATGGACAGTTATAGTCTAACCAATCACATTATCTTGGTTCATAATCGAATTAGATTACCTCAAATGAGCCTCATTTTTGTGATTTCTCACTTTGAGATGATCACTACCCAGAGATAGCAGAGAAAAATTGAACTTTTGAAGCATATGATCTTAGTAAGTGAATTCTTCAGTTAAAAGAATGTTCCGATTAAGTGTGTTAGGGGACAAATTTGTATCTTTTGATTGCAAGTTTTATTACCATAGGTCTTTCTTTATCTTGTTTTTGTTGAGAGTAGGTATCAAGGTAGGATATCTGCTTGTGCAGCTGTTTCTGATGAATTAAGAAACATGTGTTTGTATTTTTATTAATTTTGAAAACCAGACTTAGTCAGGTGTTAACATTTCATATCGTGGTTAATACAGTTACTAGTCTGGGAAATTAATGTTGTCTATCGTTACAGATGTGCTTATACTATTCAAGCACTTTCTGCTCCATATGGGCCCAACATGAAGTAATCTATTTTCTTCCATTCTGGAACACGTATATGTGGGATATGTCGACTTGGGCTATTGTTTTCTTAGTTGTTTGGTTGTATATTAAATGATGTCCTTGCAAAAACTGATTTCAAAATTATCTTGCTATTTCAATGTCTAACTTTTAAATATCCATGCATTAGTCAAGTAACAACCTTCTGATACCGTGGTTGATACAGTTACATGCTTGGAAAATGTATGTGTCCATCGTTACAGATTTGTTAATTCCTGTTGTGCTCATATCTGCTCCATTTGGACTCTACATATGTTTTCAATTTGTAGCATTGTTAAGTATACACAGTGTCTTTACTTTAATTGAGTTCAATGTTATCTTCTTGTTGTGTAGAATTTTAAACATATCCAGACATTAGTCAGGTTACAACCTTATTATACTGTGGTTGATACAGTTACATGGCTGGAAAATAGATGTGTCCATCGTTACAGATGTGTTGATTCCTTTTTAAGCTTACATCTGCTCCATTTGGACTCTATATATGTACTCCTCGAGTTGTAGCATGTATCCGCTAGTTATATAATTTGCATAGAAGTTTGCTATTTGGGTGGAGTGTGTATCAATAGTTATGTTTTCTACTTCTCAAGCACGAAAATCATTGCTTTTGCTGAGCTTATAACACGTCTTGTATGCTTCTGCAGATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAGGTGAGGTCTTATGCTTAATCTCCATCAAGTGTATCTATCTAAACTATATGCCATTAAAGCTTTGAAAATGATATCATCTACTTAATATATCAAGAATTTAAACTGTTTAGTTTTCACAATTTTGTCGATGTACGAATTGTTCATGAGCTGCATTTGGTTGTTGTAGGTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATATCACTGTCATTTACTTTTC</genome_strand>
        <mrna_strand>CATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG......................................................................................................................................................................GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATATCACTGTCATTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304545" ref_strand="+" ref_description="SGN-E304545 [cLEX-11-M20]">
      <seq>aaatctcaaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="126498" stop="128154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126798" g_stop="127194" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127813" g_stop="127854" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="439" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E304545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126798" e_stop="127194"/>
          <exon e_start="127813" e_stop="127854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAG</genome_strand>
        <mrna_strand>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355391" ref_strand="+" ref_description="SGN-E355391 [cTOS-25-M11]">
      <seq>aaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttaaagttgttcaatcatcttaaagaactaggagttcaaatctttcttgtttcttcgagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgcacagacattcaaggcagagataagaagtaaacttataagtcaaggttatagaattgttggcattattgggagaccatggagtagcattaatgggtcttccagtgcaaaaagatcattcaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="126505" stop="128551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126805" g_stop="127194" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127813" g_stop="128022" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="600" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128023" i_stop="128101" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128102" g_stop="128251" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="750" r_length="150" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E355391" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126805" e_stop="127194"/>
          <exon e_start="127813" e_stop="128022"/>
          <exon e_start="128102" e_stop="128251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATT-GGAGACCAATGGAGTAGCATTAAT-GGTCTTCCAAGTGCAAAAAGATCATTCAAACT</genome_strand>
        <mrna_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGGAGACC-ATGGAGTAGCATTAATGGGTCTTCC-AGTGCAAAAAGATCATTCAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356620" ref_strand="+" ref_description="SGN-E356620 [cTOS-21-P3]">
      <seq>aaaaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttcaacttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="126505" stop="128140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126805" g_stop="127194" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127813" g_stop="127840" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="418" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E356620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126805" e_stop="127194"/>
          <exon e_start="127813" e_stop="127840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTG</genome_strand>
        <mrna_strand>AAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357344" ref_strand="+" ref_description="SGN-E357344 [cTOS-23-M24]">
      <seq>aaaaaatggcaagaaaatttggaattttctttacaattttttgtattctttctatttcatgtcttggagattggaacattttgtcacaacacaaaaccaatagtggtctccaaattagcctaaaaaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgttcctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattttgaaagaactattaatgaatgtatactttatattagtactaattgtattttggaaaatgatggaaaagatgcttggatttttgatattgatgatactcttctttcctcagttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttaaagttgttcaatcatcttaaagaactaggagttcaaatctttcttgtttcttcgagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgcacagacattcaaggcagagataagaagtaaacttataagtcaagggtatagaattgttggcattattggagaccaatggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="126507" stop="128510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126807" g_stop="127194" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127813" g_stop="128022" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="598" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128023" i_stop="128101" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128102" g_stop="128210" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="707" r_length="109" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E357344" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126807" e_stop="127194"/>
          <exon e_start="127813" e_stop="128022"/>
          <exon e_start="128102" e_stop="128210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGT</genome_strand>
        <mrna_strand>AAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCTATTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGGTATAGAATTGTTGGCATTATTGGAGACCAATGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435736" ref_strand="+" ref_description="SGN-E435736 [STM-62-C9]">
      <seq>ggagattggaacattttgtcacaacacaaaaccaatagtggtctcaaaattagcctcaagaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgtccctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattctgaaagaactattaatgaatgtatactttatcttagtactaattgtattttggaaaatgaggggaaagatgcttggatttttgatattgatgatactcttctttcctctgttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttgaagttgttcaatcatcttaaaggactaggagttaaaatctttcttgtttcttcaagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatggatggaatagcctcatactaagagatcaagaagatgaatgcaagaatgctcaaagcttcaaggcagaaataagaagtaaacttataagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="126572" stop="128467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126872" g_stop="127194" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127813" g_stop="128022" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="533" r_length="210" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128023" i_stop="128101" i_length="79">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128102" g_stop="128168" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="600" r_length="67" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E435736" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126872" e_stop="127194"/>
          <exon e_start="127813" e_stop="128022"/>
          <exon e_start="128102" e_stop="128168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAGGTTTGAATATATTTTTTTAAAATCATTTTTTTATTTTTATGTTTACAATTGGTACTTATATTTTAAGTAAATATTTTAGAGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGT</genome_strand>
        <mrna_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCAAAATTAGCCTCAAGAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTCCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTCTGAAAGAACTATTAATGAATGTATACTTTATCTTAGTACTAATTGTATTTTGGAAAATGAGGGGAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCTGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTGAAGTTGTTCAATCATCTTAAAGGACTAGGAGTTAAAATCTTTCTTGTTTCTTCAAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG...............................................................................AGATCAAGAAGATGAATGCAAGAATGCTCAAAGCTTCAAGGCAGAAATAAGAAGTAAACTTATAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466982" ref_strand="+" ref_description="SGN-E466982 [cPRO-26-P1]">
      <seq>ggagattggaacattttgtcacaacacaaaaccaatagtggtctcaaaattagcctcaagaattattgtgagagttggagaatgaatgttgagttacacaacattagagattatgttgttgtccctcaagaatgtgttgcatatattggaaaatatatgacttctactcaatataaagttgattctgaaagaactattaatgaatgtatactttatcttagtactaattgtattttggaaaatgaggggaaagatgcttggatttttgatattgatgatactcttctttcctctgttccttactacaagaaaaatggttttgggggaaataagctaaatgtgacatctttggaggattggatgagccaagggaaaggaacagcattggaacattctttgaagttgttcaatcatcttaaaggactaggagttaaaatctttcttgttttcttcagaagagaacatcttagatccgccactgtcgacaatcttgtcaaagttgatttctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="126572" stop="128302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126872" g_stop="127194" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127813" g_stop="128002" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="513" r_length="190" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E466982" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126872" e_stop="127194"/>
          <exon e_start="127813" e_stop="128002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGGGTAAGTTTTGTTTTGTCATTTTTTTTCCTTTTTTTGGGTGATATTTTACGTTTTGTACACTGACAATATATATTCAGATCGACCTCTTATACTATCTATTGAGAAAAAGAGTGATAATTTACGTTTTTTACGCTAACAATGTATATTATGATCGACCTCTTATACTATCTGTTGAGTTTTTTTTATGACTTGTGAGATAGAGATTTAATAAATGATCTTAGACGATCCTTGTCACCTTATGAATTAACTTTTCAAGTTGAGAATTATGGATTTCTCTTTACTAGTAAGATGTAAGGATCATAATCTTTTAGTCATATATACAGCTACATACTCTTTTTGCAAAAGATTCATTTGTTATCATGATATTAGAGCTAGACTCATCCAAATTCTAGTGTACCTGATGTTGAGTTTCATATTATGTTATCCACTATTAAGTTGACAGACCATGTCGAGTCTAGCATGGGGGATGTTGAATTTGTCCCACGATGATTGTGGGATCGATGGGTATTTGATCTATTAAATAATCCTCAGATCGTGAACTAGCTTTTATGATTGAGTTAAGGCTCGATATTCATCGATTGTTGCTTATGCTTTTTTGTTTTGCTGTTGGTGGAATAGGGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGA</genome_strand>
        <mrna_strand>GGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCAAAATTAGCCTCAAGAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTCCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTCTGAAAGAACTATTAATGAATGTATACTTTATCTTAGTACTAATTGTATTTTGGAAAATGAGGGGAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCTGTTCCTTACTACAAGAAAAATGGTTTTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTGAAGTTGTTCAATCATCTTAAAGGACTAGGAGTTAAAATCTTTCTTGTTTTCTTCAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718743" ref_strand="+" ref_description="SGN-E718743 [FC05CF09]">
      <seq>gggcgattggcggccaatcggccgaattgaattcctttacgcctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131439" stop="135322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131739" g_stop="132000" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="291" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="460" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="586" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="649" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135022" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="850" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E718743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131739" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAA</genome_strand>
        <mrna_strand>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745152" ref_strand="+" ref_description="SGN-E745152 [GI|47105976]">
      <seq>gacgcctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131448" stop="135336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131747" g_stop="132000" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="423" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="549" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="612" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135035" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="826" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="827" polyA_stop="840"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E745152" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131747" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTG</genome_strand>
        <mrna_strand>GACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565426" ref_strand="+" ref_description="SGN-E565426 [3867]">
      <seq>cgcctctccgtcgtgaaaaagctaacacaaaggagaggattttgacgtaaaactatggccaccgaagcaccggtagaggcgacggagattccgcggtcgccgcggagagtcggtggagaagcaaccgataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccggcttggggaagttctcttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131449" stop="132261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131749" g_stop="131961" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E565426" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131749" e_stop="131961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTC-GCTTGGGGAAGTTCTCTTCG</genome_strand>
        <mrna_strand>CGCCTCTCCGTCGTGAAAAAGCTAACACAAAGGAGAGGATTTTGAC-GTAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCG-CGGTCGCCGC-GGAGAGTCGGTGGAGAAGCAACCG-ATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGGCTTGGGGAAGTTCTCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733310" ref_strand="+" ref_description="SGN-E733310 [LB04CB06]">
      <seq>ctctccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccgccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctatcagaggaagtggacgttcatggttcgataaccagtctaaaccgaaacgaggcgtcgcttggggaagttctcttcaaagagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccgatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcatatgggcattggtaggaagtggaaggagatcgttgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131452" stop="135349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131752" g_stop="132000" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="420" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="546" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="609" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135048" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="836" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="837" polyA_stop="852"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E733310" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131752" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTA-GAGAGGAAGTGGACGTTC-TGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTT</genome_strand>
        <mrna_strand>CTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCGCCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTATCAGAGGAAGTGGACGTTCATGGTTCGATAACCAGTCTAAACCGAAACGAGGCGTCGCTTGGGGAAGTTCTCTTCAAAGAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCGATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCGTTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714060" ref_strand="+" ref_description="SGN-E714060 [FB10BF06]">
      <seq>ccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgtttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131456" stop="135344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131756" g_stop="132000" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="414" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="540" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135044" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="826" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="828" polyA_stop="849"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E714060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131756" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</genome_strand>
        <mrna_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372798" ref_strand="+" ref_description="SGN-E372798 [TUS-32-P18]">
      <seq>ccgtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattacaccacttcttaagctctttaccatactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131456" stop="135225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131756" g_stop="132000" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="414" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="540" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="603" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="134925" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="705" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E372798" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131756" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="134925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAA</genome_strand>
        <mrna_strand>CCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATT-ACACCACTTCTTAAGCTCTTTACC-ATACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543486" ref_strand="+" ref_description="SGN-E543486 [TUS-65-F6]">
      <seq>gtcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaagagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtgggattaacaccactccttaagctctttaccatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaatttattcgaacttgatgtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131458" stop="135304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131758" g_stop="132000" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="412" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="538" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="601" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135004" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="782" r_length="181" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E543486" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131758" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGT</genome_strand>
        <mrna_strand>GTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAGAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGGATTAACACCACTCCTTAAGCTCTTTACC-ATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTG-AATTTATTCGAACTTGATGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327299" ref_strand="+" ref_description="SGN-E327299 [cTOC-19-L19]">
      <seq>tcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaataacaccactcccttagctctttaccatactgaaattgtacgattagcacttttttgcgcttgtctgctgcnaattttgatctttattgaatttattcgaactttgatgtatgttggatgtattgcattaaagattttgttctgatgtttgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131459" stop="135345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131759" g_stop="132000" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="411" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="537" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="600" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135044" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="821" r_length="221" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E327299" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131759" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAAC-TTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</genome_strand>
        <mrna_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAA-TAACACCACTCCCTTAGCTCTTTACC-ATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCNAATTTTGATCTTTATTGAATTTATTCGAACTTTGATGTATG-TTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328221" ref_strand="+" ref_description="SGN-E328221 [cTOC-21-O4]">
      <seq>tcgtgaaaaagctatacaaaaggagaggattttgacgggaatttaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaagagtcacgataaactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131459" stop="133343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131759" g_stop="132000" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="411" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133043" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E328221" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131759" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTC</genome_strand>
        <mrna_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAATTTAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAAGAGTCACGATAAACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305002" ref_strand="+" ref_description="SGN-E305002 [cLEX-10-C1]">
      <seq>tcgtgaaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131459" stop="133322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131759" g_stop="132000" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="411" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133022" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="479" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E305002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131759" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCG</genome_strand>
        <mrna_strand>TCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598718" ref_strand="-" ref_description="SGN-E598718 [51690]">
      <seq>taggcgaaattgggtaccgggccccccgaaaaagctaacacaaaggagaggattttgacgtaaaaactatggccaccgaagcaccggtagaggcgacggagattccgccggtcgcggcggaggagtcggtggagaagcaaccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgattctaaaagggagaggtcagctaagagccgatatactgtgtgaatttctttatcgtgtgggattaacaccattccttaagctctaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcgttaaagattttgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131463" stop="135333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131763" g_stop="132000" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="265" r_length="238" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="434" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="560" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="623" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135033" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="832" r_length="209" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E598718" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598718" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="131763" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTC</genome_strand>
        <mrna_strand>GAAAAAGCTAACACAAAGGAGAGGATTTTGACGTAAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGCCGGTCGCGGCGGAGGAGTCGGTGGAGAAGCAACCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGGGAGAGGTCAGCTAAGAGCCGATATACTGTGTG-AATTTCTTTATCGTGTGGGATTAACACCATTCCTTAAGCTC--TACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCGTTAAAGATTTTGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454281" ref_strand="+" ref_description="SGN-E454281 [cSTS-22-D10]">
      <seq>gaaaaagctaacacaaaggagaggattttgacggaaaaactatggccaccgaagcaccggtagaggcgacggagattccgccggtcgcggcggcggcggcggagtcggtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131463" stop="135019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131763" g_stop="132000" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="413" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="539" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="602" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="134827" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="608" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E454281" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131763" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="134827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATT---CC-GT--CGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGAT</genome_strand>
        <mrna_strand>GAAAAAGCTAACACAAAGGAGAGGATTTTGACGGAAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGCCGGTCGCGGCGGCGGCGGCGGAGTCGGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565280" ref_strand="+" ref_description="SGN-E565280 [3720]">
      <seq>gaaaaagctaacacaaaggagaggattttgacgtaaaaactatggccaccgaagcaccggctagaggcgacggagcattccgccggtcgcggcggaggagtcggtggagaagcaaccgcataagctaagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagtgtctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtagagtcaggataaactttccttggtggactaagactgccaccaatgaagcagctcaatgggcattggtaagaagtggaaggagatcattgataaccgaaaagatatctatagtttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131463" stop="135015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131763" g_stop="132000" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="409" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="534" r_length="125" r_score="0.952"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="597" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E565280" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131763" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGG-TAGAGGCGACGGAG-ATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGT-TCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTT-GTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGAT-GCCGAAAAGATATCCTATAGTTTCCAT</genome_strand>
        <mrna_strand>GAAAAAGCTAACACAAAGGAGAGGATTTTGACGTAAAAACTATGGCCACCGAAGCACCGGCTAGAGGCGACGGAGCATTCCGCCGGTCGCGGCGGAGGAGTCGGTGGAGAAGCAACCGCATAAGCTA-AGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTGTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTA-GAGTCAGGATAAACTTTCCTTGGTGGACTAAGACTGCCACCAATGAAGCAGCTCA-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAAGAAGTGGAAGGAGATCATTGATAACCGAAAAGATAT-CTATAGTTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308504" ref_strand="+" ref_description="SGN-E308504 [cLEY-21-D7]">
      <seq>aaaaagctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131464" stop="133328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131764" g_stop="132000" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="406" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133028" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="480" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E308504" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131764" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133028"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAG</genome_strand>
        <mrna_strand>AAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325551" ref_strand="+" ref_description="SGN-E325551 [cTOC-15-E10]">
      <seq>agctatacaaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgcccgaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttagctctttacaatactgaattgtacgattagcactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131468" stop="135247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131768" g_stop="132000" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="402" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="528" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="591" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="134947" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="714" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E325551" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131768" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="134947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTT</genome_strand>
        <mrna_strand>AGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCCGAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTT-AGCTCTTTA-CAATACTG-AATTGTACGATTAGCACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573175" ref_strand="+" ref_description="SGN-E573175 [32445]">
      <seq>ctacacaaaggagaggatttgacgtaaaaactatggccatcgaagcacgggtagaggcgacggagattcccgcgggtcgcggggcggaggagtcggtggagaagcaaacgcataagctagagaggaagtggacgtnctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatacgatcagatattcaagcccagcaagttgactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagcagaaaggctaatctcgagactatgtggcttgaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgattctaaaagggagaggtcagctaagagccgatatactgtgtgaatttctttatcgtgtgggattaacaccattccttaagctctaccaatactgaaatttgtacgattagcacttttttgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131473" stop="135251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131770" g_stop="132000" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="401" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="527" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="590" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="134951" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="718" r_length="128" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E573175" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131770" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="134951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATT-CCGTCGGTAGC--GGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAA-TTGTACGATTAGCACTTTTTTGCGC</genome_strand>
        <mrna_strand>CTACACAA-AGGAGAGGA-TTTGACGTAAAAACTATGGCCATCGAAGCACGGGTAGAGGCGACGGAGATTCCCGCGGGTCGCGGGGCGGAGGAGTCGGTGGAGAAGCAAACGCATAAGCTAGAGAGGAAGTGGACGTNCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGGGAGAGGTCAGCTAAGAGCCGATATACTGTGTG-AATTTCTTTATCGTGTGGGATTAACACCATTCCTTAAGCTC--TACCAATACTGAAATTTGTACGATTAGCACTTTTTTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577954" ref_strand="+" ref_description="SGN-E577954 [LE08BH12]">
      <seq>caaaaggagaggattttgacgggaaaacaatggccaccgaagcaccggtagaggcgacggagattccgtcggtagcggcagcggagactgtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaanagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattggaatttattcgaacttgatgtatgtttggatgtattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131475" stop="135318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131775" g_stop="132000" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="395" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="521" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="584" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135018" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="781" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E577954" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131775" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCA</genome_strand>
        <mrna_strand>CAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAANAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGGAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456996" ref_strand="+" ref_description="SGN-E456996 [cPRO-2-E19]">
      <seq>attttgacgtaaaaactatggccaccgaagcaccggtagaggcgacggagattccgccggtcgcggcggcggagtcggtggagaagcagccgcataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgccgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcagatattcaagcccagcaagttgactgttaatgcggattttcatttgttcaaaactgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctacgagcagccgaaaggctaatctcgagactatgtggcttgaaacattgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggagtggttgctagtgtgcgtaggagtcaggataaactttccttgtggaccaagactgccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgataccgaaaagatatcctatagtttccatgatgattctaaaagggagaggtcagctaagagccgatatactgtgtgaatttctttatcgtgtgggattaacaccattccttaagctctaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131487" stop="135262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131787" g_stop="132000" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="383" r_length="169" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="509" r_length="126" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="572" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="134962" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="710" r_length="138" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E456996" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131787" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="134962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGC</genome_strand>
        <mrna_strand>ATTTTGACGTAAAAACTATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGCCGGTCGCGGCGGCGGAGTCGGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGCCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAGATATTCAAGCCCAGCAAGTTGACTGTTAATGCGGATTTTCATTTGTTCAAAACTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACGAGCAGCCGAAAGGCTAATCTCGAGACTATGTGGCTTGAAACA....................................................................................................................................TTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGAGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACCAAGACTGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATACCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGGGAGAGGTCAGCTAAGAGCCGATATACTGTGTG-AATTTCTTTATCGTGTGGGATTAACACCATTCCTTAAGCTC--TACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543485" ref_strand="+" ref_description="SGN-E543485 [TUS-65-F6](-)">
      <seq>cataagctagagaggaagtggacgttctggttcgataaccagtctaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttatgtggtatcactttatatctcaagtagactctatgggagaaagcttagtcgattcattgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131579" stop="135413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131879" g_stop="132000" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="291" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="417" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="480" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135109" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="768" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="771" polyA_stop="783"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E543485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131879" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</genome_strand>
        <mrna_strand>CATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372797" ref_strand="+" ref_description="SGN-E372797 [TUS-32-P18](-)">
      <seq>ggacgttttggttcgataaccagtttaaaccgaaacaaggcgtcgcttggggaagttctcttcgaaaagcttatacttttgaaactgttgaggaattctggagtttatatgatcaaatattcaagcccagcaaggttactgttaatgcggactttcatttgttcaaagctgggattgagcccaaatgggaagatcctgagtgtgccaatggtggcaagtggactgctactagcagcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagatatatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtttgctgcaaattttgattttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttttgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="131598" stop="135338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131898" g_stop="132000" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132654" g_stop="132822" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="272" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="398" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="461" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="134822" g_stop="135037" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="677" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="679" polyA_stop="693"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E372797" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131898" e_stop="132000"/>
          <exon e_start="132654" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAGGTAAAATATGTCGTTTATGTATAATAGGAACGAGATATTTTTATAGATTCTTCATGTTATGTTTATTCAGATTTGTGCTCGTAAATTGTGGAAACCCTATCTATGGCTTGTATTACAAATTGATATTCATATTTCTGATGAAATCATTTTTTCTAATATAACTGAACCTAAATTTGCCCGGATTTGGATTTTTAATGTGATTAATTGATTGCGTTTGAGGATTTTTTTGTTTTTTAACTGTCAATTAAGATAGCTTTGATGTATGTTGATCTAATAGTATATGTGATCTTCACCAGAGAGCTCTTTCTGCTGATTACTGATTGAATTTGTGCCTCCTAGCAGGTTTATGACCCTGTCTCTATTTTGTGATGTTGAAAAAGTTTGTTCCTTTAGAGAATAATATTAGTATCTGCAATGTTCTATTTCTAATATTCTTCAACTACTACTACTGTAATTATAAGTGAAATTGGCTTCTTAAAATCACTGTCCATGAAAGCAGTGCACTATTAACGAAATGAAGTGCTTGTTTATATTAAATTTCATAAATTTCCTATATGTTGTATGGATTGATTTTGATTGATTAATGAGGTATTATGGTCTAGAAAGAATGGTGGGTAGAAGCTTATCTTAAATGTGGATTGTCCTCGTTGCAGTTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGAT</genome_strand>
        <mrna_strand>GGACGTTTTGGTTCGATAACCAGTTTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTTTGCTGCAAATTTTGATTTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356250" ref_strand="+" ref_description="SGN-E356250 [cTOS-20-H4]">
      <seq>agcagaaaggctaatctcgagactatgtggctagaaacactgatggcattggtcggcgagcaatttgatgagtcagaagattatgtggggtggttgctagtgtgcgtaggagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttccttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttatgtggtatcactttatatctcaagtagactctatgggagaaagcttagtcgattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="132484" stop="135405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132784" g_stop="132822" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132">
            <donor d_prob="0.977" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="132955" g_stop="133080" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="164" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="227" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="134822" g_stop="135109" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="515" r_length="288" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E356250" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132784" e_stop="132822"/>
          <exon e_start="132955" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACAGTAATAGTTCTTCTTTACCATTTGGTGTCCGTTCTGTATTTAGTATGTTATATCATATAAAGTGATGTTTTGATTAGTTTTCTTGCTAAAGATGCTCATGTATTGTTTGTTGGATGTGCTTCTTTTAAACAGCTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</genome_strand>
        <mrna_strand>AGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA....................................................................................................................................CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGAT-TATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCCTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220227" ref_strand="+" ref_description="SGN-E220227 [cLEL-12-A11](-)">
      <seq>agtcagaagatatatgtggggtggttgctagtgtgcgtagaagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttaaaaaaaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="132686" stop="135345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132986" g_stop="133080" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="158" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134822" g_stop="135044" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="381" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="407"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E220227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132986" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</genome_strand>
        <mrna_strand>AGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGAAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283839" ref_strand="-" ref_description="SGN-E283839 [cLES-1-N8]">
      <seq>tatgtggggtggttgctagtgtgcgtagaagtcaggataaactttccttgtggactaagacagccaccaatgaagcagctcagatgggcattggtaggaagtggaaggagatcattgatgccgaaaagatatcctatagtttccatgatgattctaaaagagagaggtcagctaagagccgatatactgtgtgaaatttctttatcgtgtggaattaacaccactccttaagctctttaccaatactgaaattgtacgattagcacttttttgcgcttgtctgctgcaaattttgatcttattgaaatttattcgaacttgatgtatgtttggatgtattgcattaaagattttgttctgatgtttgttatttacaaaaaaaaaaaaaaaattaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="+" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="132698" stop="135349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132998" g_stop="133080" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134653" g_stop="134715" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="146" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134822" g_stop="135048" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="373" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="391"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="+" ref_id="SGN-E283839" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="132998" e_stop="133080"/>
          <exon e_start="134653" e_stop="134715"/>
          <exon e_start="134822" e_stop="135048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAGGTGTTTTTTTTTATCTCTGGTGTTATATAGCTTCAGAACTGAAATCTGTGTTATTGTTCCACTATCTCTGAAATGTGATAAGAAATATTCTTTAAGATGGTCCAGATGACAGATCTATGTTTAGTTTCTCAAAAACCTTGGCTATTTATTTATTAATATTATTTAAGAAAATGATATACCAGAGTACTTGAAACACATACATTTGCAGGAATTTTGATGACTTTTCTCTTTAATTTCAATTTATATGTTCTTGTGCTGCGTTAAATTTTTTCTTAATGCTGATATGACCTATCTCCATTTTTTTAATTTATTTTTTTTGTTAAGAGCTGGAAAAGCGACTTTATTTGAGCACCAAATTTGAGATCAAGAGAAAATGCCTTTTCCCATTCCGTCCTATGGACGAAACACTGGTGTTGATTATTAAATATATAATTTAAATTACCCGATCAGAAGCTTTTATTCTTTTTCCTGGCATGGAAGTCCTTAATATATTTCTCTTCGCTTGTTCTTTAACCATTCCGGCAGATGTTTTTTTTTGCTTGTTGTAGTGGTACCTCCTTTCTCTATGGCTTTGTTCATGTTATTTATCGCTGATTTCTGTTCTGTCTTTAGGCATTCTGATAAAAAACACTTTGCTCTGGGCACTTGTCCCTTGCACTGCTCTATGGATGTATATGCATCTAGATCTGCTTCATATTCAACTTGCTGCTTTGAGCTCTTCTTTAAACCCCTTAAAATGTGTCTTGAAATCTAAATTATTGTGTGGTCATGTTTTATAGCGCGTATATGATTCAAAGGATCTTTAAATTCTTAAGTCGAAGCATGAAGATTTAGCTATGGGTGATGTAGCTAAAGATTTTATAATTTTCTTTCTAATTTACTTCCCATGTGAAACACTATTAACACTGCACCATCTGATGTACAAGAGTGAGATATGAGTTTTGTGAAGGTTAAGTTTTGATACCATGTCAAACAATTTGAGTATCCAACCATAAACTCTTTAGGTCATTTGTGAAGTAGCCCAAGATCAAAGAAATGACTAAAGTAGCTCATGTCTTTCATTTAACCCTTTGAATGCCCTCCCATGATCCATGTAAGAACTATATAACTCAACAGCCTGGATTACTGTGGTGAAACCGGTATCATCTGATGATAGTAAACTGAGGAAGGGACAACATTCTGATTGCTTAAGTACCAAATTGTGCTGTGATAGTTTTGCTATGCATTAACTTCTCTTGATGTATGAAATTAGCACATTGATACTAAACCCAAGATGGTATAATTTGAATGTTTTCCCCAAGTATTCGTCATTCTCCGTTTAGTAATCCTATGTACATGTTCATCTTACAGCATTGTAATACACAAGTTGTGAATTGAAATTCTTTTACATTGCTCAACTAGGGGTTTTTCAGGTCTCTTTAGTATATTATTCCCTTGTATTGTCTGTAATCACGTATGTATGCCTTTTTTTGGTCTTCTAACATCTCTGTAGTCTGAAGAACTGTTTTGCCTCCTGGCGTGATGCTCCATGGTTTTGCATTTTATAAATAACTGGTTTGTTCTATGTTGTAGATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCATGTAACTTCCCTCTCATCACTTACAATTATTGCAAATTCAATGGTCTTTTATCTTTCCTCTTGATGTTCGTTCTTTCTTAATCAACGTATTATTTTGGTCATTGCAGGATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTT</genome_strand>
        <mrna_strand>TATGTGGGGTGGTTGCTAGTGTGCGTAGAAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT..........................................................................................................GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278601" ref_strand="+" ref_description="SGN-E278601 [cLER-10-D2]">
      <seq>ttgcaagtcaataggagcagatcagaagcaaaggcaaggattaattcgattggcaaagaagaatggtgaaaaacttggatttcttgcttgatggatggcacaaaattaatcattattgccaatgtgttatgatcaaatagctatagcctcttttgtgtaattgagacaaatcaatcagatacaactttaattttatgtattattcaaacatatatatatgtgctttgtagtctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C09HBa0026F17-9Q8cg/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C09HBa0026F17.1" temp_strand="-" temp_description="C09HBa0026F17.1  AC234402.1 htgs_phase:2 submitted_to_sgn_as:gnl|gbrgsp|C09HBa0026F17 upload_account_name:spain (1 - 136545)">
        <position start="136040" stop="135202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135740" g_stop="135503" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="239" polyA_stop="255"/>
      <MATCH_line gen_id="C09HBa0026F17.1" gen_strand="-" ref_id="SGN-E278601" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C09HBa0026F17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135740" e_stop="135503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</genome_strand>
        <mrna_strand>TTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>248</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1163" PGL_stop="458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1163" e_stop="458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1163" e_stop="458" e_length="706"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1163" stop="458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCCCTTATATTCGTAATGCTGTCTTCCATTTACATCACTGATTAAAAAGAATGATGTTTTCTCCTTACATAGTTCTCATACCTCTAATAAGTACGTAGTCGTACAAGTCGAGTTGAATATTTTTCATCATCCAATTCTTCTTGAACTAGGTAGTTGCTTATACATTAATTTCTCATGTGATGTTAGAATGGCATCCCAAGGATCATTAGAGGTGCCTTCAGAGGAGTTTCCTACTAGGATCAATTACCGTCCAAATGGCAAGCCCCGGATTGTAATTGAACACTACATGCCTGAACTGGAAGCTTATATGCCAAGAGATGCTGAACCAATTGATTTAAATGTGCTACGAGAAATCAATGATCGATTGACAGCTATGCTAGAAGATGTGAGATTGATGAAGAAACGACTCACACGTATCATGATTTTACAGTTGCTATGCCTCTTTGTTGCATTTTCAGGTCTCTTTGTGAAGTTGATTCGTAAGTAAGTACTGTTACTTTTGTGAGCCATTTAACCTTCTATCAGTGCTGCTCAGAAATATGTGATAGGAAAATGGAGTGTTAATAGTTCTTTGAAGTTTTGTGCTTTGAGTCTGTACTTTCTACAGCCTTTGTGCCTCATCAGCTTGTGCTGTTGTAAATAAGTTCTTGTAATCAAGTTTTTTGGCTTTTGTTCATTGAAAAGAAAGAGTTTTGGTCTTCCT</gDNA_template>
            <first_frame> C  S  L  I  F  V  M  L  S  S  I  Y  I  T  D  *  K  E  *  C  F  L  L  T  *  F  S  Y  L  *  *  V  R  S  R  T  S  R  V  E  Y  F  S  S  S  N  S  S  *  T  R  *  L  L  I  H  *  F  L  M  *  C  *  N  G  I  P  R  I  I  R  G  A  F  R  G  V  S  Y  *  D  Q  L  P  S  K  W  Q  A  P  D  C  N  *  T  L  H  A  *  T  G  S  L  Y  A  K  R  C  *  T  N  *  F  K  C  A  T  R  N  Q  *  S  I  D  S  Y  A  R  R  C  E  I  D  E  E  T  T  H  T  Y  H  D  F  T  V  A  M  P  L  C  C  I  F  R  S  L  C  E  V  D  S  *  V  S  T  V  T  F  V  S  H  L  T  F  Y  Q  C  C  S  E  I  C  D  R  K  M  E  C  *  *  F  F  E  V  L  C  F  E  S  V  L  S  T  A  F  V  P  H  Q  L  V  L  L  *  I  S  S  C  N  Q  V  F  W  L  L  F  I  E  K  K  E  F  W  S  S  </first_frame>
            <second_frame>  A  P  L  Y  S  *  C  C  L  P  F  T  S  L  I  K  K  N  D  V  F  S  L  H  S  S  H  T  S  N  K  Y  V  V  V  Q  V  E  L  N  I  F  H  H  P  I  L  L  E  L  G  S  C  L  Y  I  N  F  S  C  D  V  R  M  A  S  Q  G  S  L  E  V  P  S  E  E  F  P  T  R  I  N  Y  R  P  N  G  K  P  R  I  V  I  E  H  Y  M  P  E  L  E  A  Y  M  P  R  D  A  E  P  I  D  L  N  V  L  R  E  I  N  D  R  L  T  A  M  L  E  D  V  R  L  M  K  K  R  L  T  R  I  M  I  L  Q  L  L  C  L  F  V  A  F  S  G  L  F  V  K  L  I  R  K  *  V  L  L  L  L  *  A  I  *  P  S  I  S  A  A  Q  K  Y  V  I  G  K  W  S  V  N  S  S  L  K  F  C  A  L  S  L  Y  F  L  Q  P  L  C  L  I  S  L  C  C  C  K  *  V  L  V  I  K  F  F  G  F  C  S  L  K  R  K  S  F  G  L  P </second_frame>
            <third_frame>   L  P  Y  I  R  N  A  V  F  H  L  H  H  *  L  K  R  M  M  F  S  P  Y  I  V  L  I  P  L  I  S  T  *  S  Y  K  S  S  *  I  F  F  I  I  Q  F  F  L  N  *  V  V  A  Y  T  L  I  S  H  V  M  L  E  W  H  P  K  D  H  *  R  C  L  Q  R  S  F  L  L  G  S  I  T  V  Q  M  A  S  P  G  L  *  L  N  T  T  C  L  N  W  K  L  I  C  Q  E  M  L  N  Q  L  I  *  M  C  Y  E  K  S  M  I  D  *  Q  L  C  *  K  M  *  D  *  *  R  N  D  S  H  V  S  *  F  Y  S  C  Y  A  S  L  L  H  F  Q  V  S  L  *  S  *  F  V  S  K  Y  C  Y  F  C  E  P  F  N  L  L  S  V  L  L  R  N  M  *  *  E  N  G  V  L  I  V  L  *  S  F  V  L  *  V  C  T  F  Y  S  L  C  A  S  S  A  C  A  V  V  N  K  F  L  *  S  S  F  L  A  F  V  H  *  K  E  R  V  L  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1144" stop="674"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCLPFTSLIKKNDVFSLHSSHTSNKYVVVQVELNIFHHPILLELGSCLYINFSCDVRMASQGSLEVPSEEFPTRINYRPNGKPRIVIEHYMPELEAYMPRDAEPIDLNVLREINDRLTAMLEDVRLMKKRLTRIMILQLLCLFVAFSGLFVKLIRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2322" PGL_stop="1527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2322" e_stop="1527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="2322" e_stop="1527" e_length="796"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2322" stop="1527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2321" stop="1745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATTTTGTTCTATATTTTGTTGAAAGATCTTTCTGAAATTGCTAAAATTACTGCTCTCTACTCTCATTCCTCTAATTCTCAGTAAGTTTCCATACCCATTTTCTTCTTTTTTTTCACTTGGAAATCCCTGTTGTTATGATTCTTTGTTCTTTTTTTTGAATTTTAGTACTGTTTCTTGATTTTTTTCTGATTTTGTTGATGTTTAAGGGAAATGTTGAAGAAAAACATTGAAATTTTAATGGGTCTGTTTACTTTTATCTTGTTTGAATTCCCCTTTTACTTTTATCTGGTACTGGTTGCTGGTGGGAGTTAGTAGAAATAGAGAGGCATGCAAAAGCTGAATGGATATTGGTTATAATAAAAAAAGAAGAAAACTTTGGCTGAATTTGGTGATTATTTTTTAATAAAATTATCTTAGTGGATTTTTTAACCTTTCGGGAATAGTTTGTCTACCTCCACGAGCTAGTGAAACACTCTCAACTTTCATAGACCTCACTTGTGGGATTTCACTCGATATATTGTTGTTGTTGTTATCCAATTCGACCTTTTTTTTGGGTTTGGTATGCATTTGTGGGGAGGAGGTACTTTCTTTGGTATGTTAAGAGTGAAGTTTTACTTGTTATTGCTTTTGGTTTTGGTTGCATAAGACTAGAAAGTATCTGAGGCTGTTAATTCCAATGTGAACAATCCAAGGTGTAGGTGGAGAAAGGCTTAGAATTTTACAATCACAAAGCAAAAACTGAAATGTTGAATAAGAGCATGTATAAGAGTATCTAAAGAAAAAAATGTTTTTA</gDNA_template>
            <first_frame> E  I  L  F  Y  I  L  L  K  D  L  S  E  I  A  K  I  T  A  L  Y  S  H  S  S  N  S  Q  *  V  S  I  P  I  F  F  F  F  F  T  W  K  S  L  L  L  *  F  F  V  L  F  F  E  F  *  Y  C  F  L  I  F  F  *  F  C  *  C  L  R  E  M  L  K  K  N  I  E  I  L  M  G  L  F  T  F  I  L  F  E  F  P  F  Y  F  Y  L  V  L  V  A  G  G  S  *  *  K  *  R  G  M  Q  K  L  N  G  Y  W  L  *  *  K  K  K  K  T  L  A  E  F  G  D  Y  F  L  I  K  L  S  *  W  I  F  *  P  F  G  N  S  L  S  T  S  T  S  *  *  N  T  L  N  F  H  R  P  H  L  W  D  F  T  R  Y  I  V  V  V  V  I  Q  F  D  L  F  F  G  F  G  M  H  L  W  G  G  G  T  F  F  G  M  L  R  V  K  F  Y  L  L  L  L  L  V  L  V  A  *  D  *  K  V  S  E  A  V  N  S  N  V  N  N  P  R  C  R  W  R  K  A  *  N  F  T  I  T  K  Q  K  L  K  C  *  I  R  A  C  I  R  V  S  K  E  K  N  V  F  </first_frame>
            <second_frame>  K  F  C  S  I  F  C  *  K  I  F  L  K  L  L  K  L  L  L  S  T  L  I  P  L  I  L  S  K  F  P  Y  P  F  S  S  F  F  S  L  G  N  P  C  C  Y  D  S  L  F  F  F  L  N  F  S  T  V  S  *  F  F  S  D  F  V  D  V  *  G  K  C  *  R  K  T  L  K  F  *  W  V  C  L  L  L  S  C  L  N  S  P  F  T  F  I  W  Y  W  L  L  V  G  V  S  R  N  R  E  A  C  K  S  *  M  D  I  G  Y  N  K  K  R  R  K  L  W  L  N  L  V  I  I  F  *  *  N  Y  L  S  G  F  F  N  L  S  G  I  V  C  L  P  P  R  A  S  E  T  L  S  T  F  I  D  L  T  C  G  I  S  L  D  I  L  L  L  L  L  S  N  S  T  F  F  L  G  L  V  C  I  C  G  E  E  V  L  S  L  V  C  *  E  *  S  F  T  C  Y  C  F  W  F  W  L  H  K  T  R  K  Y  L  R  L  L  I  P  M  *  T  I  Q  G  V  G  G  E  R  L  R  I  L  Q  S  Q  S  K  N  *  N  V  E  *  E  H  V  *  E  Y  L  K  K  K  M  F  L </second_frame>
            <third_frame>   N  F  V  L  Y  F  V  E  R  S  F  *  N  C  *  N  Y  C  S  L  L  S  F  L  *  F  S  V  S  F  H  T  H  F  L  L  F  F  H  L  E  I  P  V  V  M  I  L  C  S  F  F  *  I  L  V  L  F  L  D  F  F  L  I  L  L  M  F  K  G  N  V  E  E  K  H  *  N  F  N  G  S  V  Y  F  Y  L  V  *  I  P  L  L  L  L  S  G  T  G  C  W  W  E  L  V  E  I  E  R  H  A  K  A  E  W  I  L  V  I  I  K  K  E  E  N  F  G  *  I  W  *  L  F  F  N  K  I  I  L  V  D  F  L  T  F  R  E  *  F  V  Y  L  H  E  L  V  K  H  S  Q  L  S  *  T  S  L  V  G  F  H  S  I  Y  C  C  C  C  Y  P  I  R  P  F  F  W  V  W  Y  A  F  V  G  R  R  Y  F  L  W  Y  V  K  S  E  V  L  L  V  I  A  F  G  F  G  C  I  R  L  E  S  I  *  G  C  *  F  Q  C  E  Q  S  K  V  *  V  E  K  G  L  E  F  Y  N  H  K  A  K  T  E  M  L  N  K  S  M  Y  K  S  I  *  R  K  K  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1913" stop="1719"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYLSGFFNLSGIVCLPPRASETLSTFIDLTCGISLDILLLLLSNSTFFLGLVCICGEEVLSLVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="3900" PGL_stop="3086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3900" e_stop="3086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3900" e_stop="3086" e_length="815"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3900" stop="3086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAGAAGAGAGGTCAAAGTAAAAGGACGAGAAAATATAGAAGGGTAGGGAGAGTCGTCGTTGATTCGTTCTATTCTTACAGACGCAAAAGAGAATCTGATTTTGATGAGGATCCATTACTGACTAAATGATCATTCTGCTGCTTCAAGAAATTTGTTCATGTCCTAGTCCCAAGAGGAAATGACAACGAGAGTGGACGACTCATGACCAGTCTCTGGTACTTAGTAGAACTCATCTATTGGTTCTTGTCAAGTTACAATGATGCAGTTTGTTTCTCGGATCATCTCTGAACTTTCAAGAGACGTATCTTTTACTCGAGCAGATTGAAGAAGGACGGTGTAGCCTTATCCCACGTTGTGTAAAACTGTTGAGTTGCGGAGAGGCAAGAGAGATAGTCTTTTCAAGATCTCCTCCCCACTGGTAGTTCTCACTGATCAGAGACTTGTTTCGAGTAGGATCCCTCGCGCTCTATTCCTTTTGTAGATGATGGCAGCTTCTCAGTTTGTGGGAGGTTTGAGAAAAATGACAATCCAGAGCAACTATCCTGACTTGAGGAGTACTATTTCTGCAATGGAAGGTTACCTTTAGTTCCATAGAGCTTGTCTAAAGGAAAAGAAGCAAACAAAAGTGAGCCATGATTTTGAGCTCAAAAAGGTATTGCAACATTTGGTGATTTCTTTTCATCTGTTAAGCGTTGACAGCAGAGTTACTTGATATTTGTGCTGGCGGAAGATAGTATGTCCTGAAATAGTTGAGTTGAGGTGTGCGTAAGTTGGTTGATATTTGTGCTGGCGGAAGATAGTATGTCCTGAAA</gDNA_template>
            <first_frame> G  K  K  R  G  Q  S  K  R  T  R  K  Y  R  R  V  G  R  V  V  V  D  S  F  Y  S  Y  R  R  K  R  E  S  D  F  D  E  D  P  L  L  T  K  *  S  F  C  C  F  K  K  F  V  H  V  L  V  P  R  G  N  D  N  E  S  G  R  L  M  T  S  L  W  Y  L  V  E  L  I  Y  W  F  L  S  S  Y  N  D  A  V  C  F  S  D  H  L  *  T  F  K  R  R  I  F  Y  S  S  R  L  K  K  D  G  V  A  L  S  H  V  V  *  N  C  *  V  A  E  R  Q  E  R  *  S  F  Q  D  L  L  P  T  G  S  S  H  *  S  E  T  C  F  E  *  D  P  S  R  S  I  P  F  V  D  D  G  S  F  S  V  C  G  R  F  E  K  N  D  N  P  E  Q  L  S  *  L  E  E  Y  Y  F  C  N  G  R  L  P  L  V  P  *  S  L  S  K  G  K  E  A  N  K  S  E  P  *  F  *  A  Q  K  G  I  A  T  F  G  D  F  F  S  S  V  K  R  *  Q  Q  S  Y  L  I  F  V  L  A  E  D  S  M  S  *  N  S  *  V  E  V  C  V  S  W  L  I  F  V  L  A  E  D  S  M  S  *   </first_frame>
            <second_frame>  E  R  R  E  V  K  V  K  G  R  E  N  I  E  G  *  G  E  S  S  L  I  R  S  I  L  T  D  A  K  E  N  L  I  L  M  R  I  H  Y  *  L  N  D  H  S  A  A  S  R  N  L  F  M  S  *  S  Q  E  E  M  T  T  R  V  D  D  S  *  P  V  S  G  T  *  *  N  S  S  I  G  S  C  Q  V  T  M  M  Q  F  V  S  R  I  I  S  E  L  S  R  D  V  S  F  T  R  A  D  *  R  R  T  V  *  P  Y  P  T  L  C  K  T  V  E  L  R  R  G  K  R  D  S  L  F  K  I  S  S  P  L  V  V  L  T  D  Q  R  L  V  S  S  R  I  P  R  A  L  F  L  L  *  M  M  A  A  S  Q  F  V  G  G  L  R  K  M  T  I  Q  S  N  Y  P  D  L  R  S  T  I  S  A  M  E  G  Y  L  *  F  H  R  A  C  L  K  E  K  K  Q  T  K  V  S  H  D  F  E  L  K  K  V  L  Q  H  L  V  I  S  F  H  L  L  S  V  D  S  R  V  T  *  Y  L  C  W  R  K  I  V  C  P  E  I  V  E  L  R  C  A  *  V  G  *  Y  L  C  W  R  K  I  V  C  P  E  </second_frame>
            <third_frame>   K  E  E  R  S  K  *  K  D  E  K  I  *  K  G  R  E  S  R  R  *  F  V  L  F  L  Q  T  Q  K  R  I  *  F  *  *  G  S  I  T  D  *  M  I  I  L  L  L  Q  E  I  C  S  C  P  S  P  K  R  K  *  Q  R  E  W  T  T  H  D  Q  S  L  V  L  S  R  T  H  L  L  V  L  V  K  L  Q  *  C  S  L  F  L  G  S  S  L  N  F  Q  E  T  Y  L  L  L  E  Q  I  E  E  G  R  C  S  L  I  P  R  C  V  K  L  L  S  C  G  E  A  R  E  I  V  F  S  R  S  P  P  H  W  *  F  S  L  I  R  D  L  F  R  V  G  S  L  A  L  Y  S  F  C  R  *  W  Q  L  L  S  L  W  E  V  *  E  K  *  Q  S  R  A  T  I  L  T  *  G  V  L  F  L  Q  W  K  V  T  F  S  S  I  E  L  V  *  R  K  R  S  K  Q  K  *  A  M  I  L  S  S  K  R  Y  C  N  I  W  *  F  L  F  I  C  *  A  L  T  A  E  L  L  D  I  C  A  G  G  R  *  Y  V  L  K  *  L  S  *  G  V  R  K  L  V  D  I  C  A  G  G  R  *  Y  V  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="4533" PGL_stop="4134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4533" e_stop="4134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="4533" e_stop="4134" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4533" stop="4134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTTATGGTAGCAGCTACAGGCGAAAGCATTGCTCGTCCTCTTATATGGATTGTTATGTCAATTCTAGCAGTCCCGGTCCTCTCCGGATCTATCTTTTGTTATCAGACACAATACTTAAATCTTGATCCATCAGTTATAGGGATGTCAAAGGTGATAGGCCAATTGCTGCTTCTTTCTTTGACAGTCTTTTATGACCGGTACGGCAAAAGGATTCCAATGAGAAAACTGATTGGTATTGTGCAGATAACATATGCTGCTTCTCTTCTTCTTGACCTTGTACTTGTCAAGCAGCTTAATCTCAAATTGGGAATTTCGAATGAATGGTTTGCTCTTTGCTTCTCGGGTCTAGCAGAAACTATTGCAATATTTAAGCTCTTACCATTCCATGTGCTGTTTG</gDNA_template>
            <first_frame> D  L  M  V  A  A  T  G  E  S  I  A  R  P  L  I  W  I  V  M  S  I  L  A  V  P  V  L  S  G  S  I  F  C  Y  Q  T  Q  Y  L  N  L  D  P  S  V  I  G  M  S  K  V  I  G  Q  L  L  L  L  S  L  T  V  F  Y  D  R  Y  G  K  R  I  P  M  R  K  L  I  G  I  V  Q  I  T  Y  A  A  S  L  L  L  D  L  V  L  V  K  Q  L  N  L  K  L  G  I  S  N  E  W  F  A  L  C  F  S  G  L  A  E  T  I  A  I  F  K  L  L  P  F  H  V  L  F  </first_frame>
            <second_frame>  I  L  W  *  Q  L  Q  A  K  A  L  L  V  L  L  Y  G  L  L  C  Q  F  *  Q  S  R  S  S  P  D  L  S  F  V  I  R  H  N  T  *  I  L  I  H  Q  L  *  G  C  Q  R  *  *  A  N  C  C  F  F  L  *  Q  S  F  M  T  G  T  A  K  G  F  Q  *  E  N  *  L  V  L  C  R  *  H  M  L  L  L  F  F  L  T  L  Y  L  S  S  S  L  I  S  N  W  E  F  R  M  N  G  L  L  F  A  S  R  V  *  Q  K  L  L  Q  Y  L  S  S  Y  H  S  M  C  C  L </second_frame>
            <third_frame>   S  Y  G  S  S  Y  R  R  K  H  C  S  S  S  Y  M  D  C  Y  V  N  S  S  S  P  G  P  L  R  I  Y  L  L  L  S  D  T  I  L  K  S  *  S  I  S  Y  R  D  V  K  G  D  R  P  I  A  A  S  F  F  D  S  L  L  *  P  V  R  Q  K  D  S  N  E  K  T  D  W  Y  C  A  D  N  I  C  C  F  S  S  S  *  P  C  T  C  Q  A  A  *  S  Q  I  G  N  F  E  *  M  V  C  S  L  L  L  G  S  S  R  N  Y  C  N  I  *  A  L  T  I  P  C  A  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4533" stop="4135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLMVAATGESIARPLIWIVMSILAVPVLSGSIFCYQTQYLNLDPSVIGMSKVIGQLLLLSLTVFYDRYGKRIPMRKLIGIVQITYAASLLLDLVLVKQLNLKLGISNEWFALCFSGLAETIAIFKLLPFHVLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="16131" PGL_stop="10577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16131" e_stop="15635"/>
            <exon e_start="15549" e_stop="15507"/>
            <exon e_start="14008" e_stop="13948"/>
            <exon e_start="11739" e_stop="11605"/>
            <exon e_start="11220" e_stop="10577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.551" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16131" e_stop="15635" e_length="497"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15634" i_stop="15550" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15549" e_stop="15507" e_length="43"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.983">
            <gDNA_intron_boundary i_start="15506" i_stop="14009" i_length="1498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14008" e_stop="13948" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="13947" i_stop="11740" i_length="2208"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11739" e_stop="11605" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.551" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11604" i_stop="11221" i_length="384"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="11220" e_stop="10577" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16131" stop="15635"/>
              <exon start="15549" stop="15507"/>
              <exon start="14008" stop="13948"/>
              <exon start="11739" stop="11719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16068" stop="15635"/>
              <exon start="15549" stop="15507"/>
              <exon start="14008" stop="13948"/>
              <exon start="11739" stop="11605"/>
              <exon start="11220" stop="11180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15655" stop="15635"/>
              <exon start="15549" stop="15507"/>
              <exon start="14008" stop="13948"/>
              <exon start="11739" stop="11605"/>
              <exon start="11220" stop="10950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15654" stop="15635"/>
              <exon start="15549" stop="15507"/>
              <exon start="14008" stop="13948"/>
              <exon start="11739" stop="11605"/>
              <exon start="11220" stop="10792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11641" stop="11605"/>
              <exon start="11220" stop="10577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379145" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTGTCATCTTCTCCAACAAACCAAATCTTTAAAAAAAATCCCTTTTTTTTTCTCTTTCCACTGATCAGTGCCACTTGTTTTTCTTTGCTAAAATCACACAGCCCATTGAAACCTCTCACCATTCATTATCTGCAGAATAAATAAATGCATCTTCTTCTGTCAAAAGCTTCCCTTTTTTTCAATCCAAGAGTTATTTTTTCTTCTTCAACAACAATGGCTACATCTACTTCAATTTCTGTTTCTTCAAAACCCCGTTTAAAGGGTATTGTATTTGACATGGACGGAACCCTAACGGTCCCTGTTATTGATTTTCAGGCCATGTACAGGGCTGTTCTGGGTCATGATGAATACCTTGCTGTTAAATCTAAGAACCCTTCTGGGATTGATATTTTGCACCACATTGAAAGTTGGAGCCCTGATAAGCAACGTAGGGCATATGAGGTTATTGCTGATTATGAAAAACAGGGTCTTGATCGACTCCAGATTATGCCTG : GTGCTGCTGAACTTTGTAGTTTTCTTGATTCTAGGAATATTAG : AAGGGGATTAATCACTAGAAATGTCAAAGATGCAGTTGACTTGTTTCATGAACGCTTTGGA : GTGAAATTTTCTCCTGCACTGAGCAGAGAATATCGTCCATACAAACCAGATCCAGCTCCATTGCTGCACATTTGTTCAACTTGGGAAGTTCAATCTAATGAAGTAATGATGATTGGCGACAGCCTTAAAGATGAT : GTTGCTTGTGGCAAACGAGCTGGAGCTTTTACTTGCTTGCTCGACGAAAGAGGAAGGTATGATGCCCCAGAATATGCAAACGTTCAACACAAACCAGACTATAAGGTGTCTTCTCTTGTTGAGGTTCAGTCACTACTAGAAAGAGATTTCGAGCTGACATCTTGATTTTTGCAAATCTTTGGAACCCCTCCTGGCCTGGCTGAGCAACGAGACATGGTTTACCCTCGTAAGCCTCCACGTAGCATTCCTGCATACACGTTTCTTTTGGTTTCTGCAAGATCATAGGAATTAGATTGCAGCTTTGCTCAAGTGAGATGATCATAATTCATTTTTCAAGCCAGAAATGGGGAATATGAGTTGTTTTTGTTCACTCTTGGTGGTGAAACTGGTGATTTACAGAGACTTTGTATCGATTTAGCCTGGTTCGTTGTGGGTGACATAGTCACGAGACCATGACTGTGTTTTCGTATGAAGTGTTCTTGTCATCTCTTTGCTCGTAATGGAAGCTCTAGCTCAGCTCTTCCACGCGAATAGTAGCTAAGATTTCTTAGAAATAATTGTACTTGTTAGTGCAATGATTTTCACAAGCTAGTCTCAGTTTTTGTTCTCTTTTTTTGGTATCTCGAGACGACTCACAACCTCTG</gDNA_template>
            <first_frame> I  F  V  I  F  S  N  K  P  N  L  *  K  K  S  L  F  F  S  L  S  T  D  Q  C  H  L  F  F  F  A  K  I  T  Q  P  I  E  T  S  H  H  S  L  S  A  E  *  I  N  A  S  S  S  V  K  S  F  P  F  F  Q  S  K  S  Y  F  F  F  F  N  N  N  G  Y  I  Y  F  N  F  C  F  F  K  T  P  F  K  G  Y  C  I  *  H  G  R  N  P  N  G  P  C  Y  *  F  S  G  H  V  Q  G  C  S  G  S  *  *  I  P  C  C  *  I  *  E  P  F  W  D  *  Y  F  A  P  H  *  K  L  E  P  *  *  A  T  *  G  I  *  G  Y  C  *  L  *  K  T  G  S  *  S  T  P  D  Y  A  W :   C  C  *  T  L  *  F  S  *  F  *  E  Y  *  :  K  G  I  N  H  *  K  C  Q  R  C  S  *  L  V  S  *  T  L  W   : S  E  I  F  S  C  T  E  Q  R  I  S  S  I  Q  T  R  S  S  S  I  A  A  H  L  F  N  L  G  S  S  I  *  *  S  N  D  D  W  R  Q  P  *  R  *   : C  C  L  W  Q  T  S  W  S  F  Y  L  L  A  R  R  K  R  K  V  *  C  P  R  I  C  K  R  S  T  Q  T  R  L  *  G  V  F  S  C  *  G  S  V  T  T  R  K  R  F  R  A  D  I  L  I  F  A  N  L  W  N  P  S  W  P  G  *  A  T  R  H  G  L  P  S  *  A  S  T  *  H  S  C  I  H  V  S  F  G  F  C  K  I  I  G  I  R  L  Q  L  C  S  S  E  M  I  I  I  H  F  S  S  Q  K  W  G  I  *  V  V  F  V  H  S  W  W  *  N  W  *  F  T  E  T  L  Y  R  F  S  L  V  R  C  G  *  H  S  H  E  T  M  T  V  F  S  Y  E  V  F  L  S  S  L  C  S  *  W  K  L  *  L  S  S  S  T  R  I  V  A  K  I  S  *  K  *  L  Y  L  L  V  Q  *  F  S  Q  A  S  L  S  F  C  S  L  F  L  V  S  R  D  D  S  Q  P  L </first_frame>
            <second_frame>  S  L  S  S  S  P  T  N  Q  I  F  K  K  N  P  F  F  F  L  F  P  L  I  S  A  T  C  F  S  L  L  K  S  H  S  P  L  K  P  L  T  I  H  Y  L  Q  N  K  *  M  H  L  L  L  S  K  A  S  L  F  F  N  P  R  V  I  F  S  S  S  T  T  M  A  T  S  T  S  I  S  V  S  S  K  P  R  L  K  G  I  V  F  D  M  D  G  T  L  T  V  P  V  I  D  F  Q  A  M  Y  R  A  V  L  G  H  D  E  Y  L  A  V  K  S  K  N  P  S  G  I  D  I  L  H  H  I  E  S  W  S  P  D  K  Q  R  R  A  Y  E  V  I  A  D  Y  E  K  Q  G  L  D  R  L  Q  I  M  P   : G  A  A  E  L  C  S  F  L  D  S  R  N  I  R :   R  G  L  I  T  R  N  V  K  D  A  V  D  L  F  H  E  R  F  G  :  V  K  F  S  P  A  L  S  R  E  Y  R  P  Y  K  P  D  P  A  P  L  L  H  I  C  S  T  W  E  V  Q  S  N  E  V  M  M  I  G  D  S  L  K  D  D  :  V  A  C  G  K  R  A  G  A  F  T  C  L  L  D  E  R  G  R  Y  D  A  P  E  Y  A  N  V  Q  H  K  P  D  Y  K  V  S  S  L  V  E  V  Q  S  L  L  E  R  D  F  E  L  T  S  *  F  L  Q  I  F  G  T  P  P  G  L  A  E  Q  R  D  M  V  Y  P  R  K  P  P  R  S  I  P  A  Y  T  F  L  L  V  S  A  R  S  *  E  L  D  C  S  F  A  Q  V  R  *  S  *  F  I  F  Q  A  R  N  G  E  Y  E  L  F  L  F  T  L  G  G  E  T  G  D  L  Q  R  L  C  I  D  L  A  W  F  V  V  G  D  I  V  T  R  P  *  L  C  F  R  M  K  C  S  C  H  L  F  A  R  N  G  S  S  S  S  A  L  P  R  E  *  *  L  R  F  L  R  N  N  C  T  C  *  C  N  D  F  H  K  L  V  S  V  F  V  L  F  F  W  Y  L  E  T  T  H  N  L   </second_frame>
            <third_frame>   L  C  H  L  L  Q  Q  T  K  S  L  K  K  I  P  F  F  F  S  F  H  *  S  V  P  L  V  F  L  C  *  N  H  T  A  H  *  N  L  S  P  F  I  I  C  R  I  N  K  C  I  F  F  C  Q  K  L  P  F  F  S  I  Q  E  L  F  F  L  L  Q  Q  Q  W  L  H  L  L  Q  F  L  F  L  Q  N  P  V  *  R  V  L  Y  L  T  W  T  E  P  *  R  S  L  L  L  I  F  R  P  C  T  G  L  F  W  V  M  M  N  T  L  L  L  N  L  R  T  L  L  G  L  I  F  C  T  T  L  K  V  G  A  L  I  S  N  V  G  H  M  R  L  L  L  I  M  K  N  R  V  L  I  D  S  R  L  C  L  :  V  L  L  N  F  V  V  F  L  I  L  G  I  L   : E  G  D  *  S  L  E  M  S  K  M  Q  L  T  C  F  M  N  A  L  E :   *  N  F  L  L  H  *  A  E  N  I  V  H  T  N  Q  I  Q  L  H  C  C  T  F  V  Q  L  G  K  F  N  L  M  K  *  *  *  L  A  T  A  L  K  M  M :   L  L  V  A  N  E  L  E  L  L  L  A  C  S  T  K  E  E  G  M  M  P  Q  N  M  Q  T  F  N  T  N  Q  T  I  R  C  L  L  L  L  R  F  S  H  Y  *  K  E  I  S  S  *  H  L  D  F  C  K  S  L  E  P  L  L  A  W  L  S  N  E  T  W  F  T  L  V  S  L  H  V  A  F  L  H  T  R  F  F  W  F  L  Q  D  H  R  N  *  I  A  A  L  L  K  *  D  D  H  N  S  F  F  K  P  E  M  G  N  M  S  C  F  C  S  L  L  V  V  K  L  V  I  Y  R  D  F  V  S  I  *  P  G  S  L  W  V  T  *  S  R  D  H  D  C  V  F  V  *  S  V  L  V  I  S  L  L  V  M  E  A  L  A  Q  L  F  H  A  N  S  S  *  D  F  L  E  I  I  V  L  V  S  A  M  I  F  T  S  *  S  Q  F  L  F  S  F  F  G  I  S  R  R  L  T  T  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15983" stop="15635"/>
                    <exon start="15549" stop="15507"/>
                    <exon start="14008" stop="13948"/>
                    <exon start="11739" stop="11605"/>
                    <exon start="11220" stop="11056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHLLLSKASLFFNPRVIFSSSTTMATSTSISVSSKPRLKGIVFDMDGTLTVPVIDFQAMYRAVLGHDEYLAVKSKNPSGIDILHHIESWSPDKQRRAYEVIADYEKQGLDRLQIMPGAAELCSFLDSRNIRRGLITRNVKDAVDLFHERFGVKFSPALSREYRPYKPDPAPLLHICSTWEVQSNEVMMIGDSLKDDVACGKRAGAFTCLLDERGRYDAPEYANVQHKPDYKVSSLVEVQSLLERDFELTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="19369" PGL_stop="22306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19369" e_stop="19501"/>
            <exon e_start="20332" e_stop="20504"/>
            <exon e_start="20590" e_stop="20784"/>
            <exon e_start="21514" e_stop="21690"/>
            <exon e_start="22241" e_stop="22306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.576" acc_prob="0.995" e_score="0.980"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19369" e_stop="19501" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="19502" i_stop="20331" i_length="830"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20332" e_stop="20504" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20505" i_stop="20589" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20590" e_stop="20784" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="20785" i_stop="21513" i_length="729"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="21514" e_stop="21690" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.576" acc_prob="0.995">
            <gDNA_intron_boundary i_start="21691" i_stop="22240" i_length="550"/>
          </intron>
          <exon e_serial="5" e_score="0.939">
            <gDNA_exon_boundary e_start="22241" e_stop="22306" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19369" stop="19501"/>
              <exon start="20332" stop="20504"/>
              <exon start="20590" stop="20784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19370" stop="19501"/>
              <exon start="20332" stop="20504"/>
              <exon start="20590" stop="20784"/>
              <exon start="21514" stop="21665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19370" stop="19501"/>
              <exon start="20332" stop="20504"/>
              <exon start="20590" stop="20784"/>
              <exon start="21514" stop="21594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19370" stop="19501"/>
              <exon start="20332" stop="20504"/>
              <exon start="20590" stop="20784"/>
              <exon start="21514" stop="21553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19392" stop="19501"/>
              <exon start="20332" stop="20504"/>
              <exon start="20590" stop="20784"/>
              <exon start="21514" stop="21690"/>
              <exon start="22241" stop="22306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19394" stop="19501"/>
              <exon start="20332" stop="20504"/>
              <exon start="20590" stop="20784"/>
              <exon start="21514" stop="21570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCAAAGAGGAGATTGAAGAGGTGGAAAAGGAAACGAAACAAAAGAAGAAAAAGAAGATGAAGAAGAAGAAGAAAGATAAGATCAATAAAGATGCTGTAAATGAAGCTGAAGGAAATGAAGAGCCGCCAGCTG : TCACTGATGGAAATGATGACCAAGAACAAGATTCAGTAGATGAAACTGAATATTATGCATGGAATGAACTGAGACTTCATCCACTGCTCATGAAATCGATATACGCGCTCAAGTTCAAAGAACCTACACCAATACAACAAGCGTGCATTCCTGCAGGTTCTCACCAAGGAAAG : GATGTTGTGGGTGCTGCAGAGACAGGTTCTGGGAAAACACTGGCATTTGGTCTGCCCATTCTTCAACGTCTGCTTGAGGAGCGAGAAAAGGCCGAAAGGCAGCTTCCAGAAAATGGAGAATTGGATGATAAAGTTGCCTCCGCAGGTCTCCTCCGCGCTCTAATTATTACTCCTACAAGAGAGCTTGCCCTTCAG : GTCACTGATCATCTGAAGGAAGCAGCAAAACATTCAAATTTTAGGGTTGTCCCTATTGTTGGTGGAATGTCAAGTGAAAAACAAGAAAGACTTTTGAAAACAAGGCCTGAAATTGTTGTCGGAACTCCGGGGAGGCTTTGGGAGCTTATGTCTGGTGGTGAAACTCATCTCGTGGAG : TTGCACTCACTGTCATTTTTTGTGCTGGATGAGGCCGATCGGATGATAGAAAATGGCCATTTCCAC</gDNA_template>
            <first_frame> S  K  E  E  I  E  E  V  E  K  E  T  K  Q  K  K  K  K  K  M  K  K  K  K  K  D  K  I  N  K  D  A  V  N  E  A  E  G  N  E  E  P  P  A   : V  T  D  G  N  D  D  Q  E  Q  D  S  V  D  E  T  E  Y  Y  A  W  N  E  L  R  L  H  P  L  L  M  K  S  I  Y  A  L  K  F  K  E  P  T  P  I  Q  Q  A  C  I  P  A  G  S  H  Q  G  K  :  D  V  V  G  A  A  E  T  G  S  G  K  T  L  A  F  G  L  P  I  L  Q  R  L  L  E  E  R  E  K  A  E  R  Q  L  P  E  N  G  E  L  D  D  K  V  A  S  A  G  L  L  R  A  L  I  I  T  P  T  R  E  L  A  L  Q  :  V  T  D  H  L  K  E  A  A  K  H  S  N  F  R  V  V  P  I  V  G  G  M  S  S  E  K  Q  E  R  L  L  K  T  R  P  E  I  V  V  G  T  P  G  R  L  W  E  L  M  S  G  G  E  T  H  L  V  E  :  L  H  S  L  S  F  F  V  L  D  E  A  D  R  M  I  E  N  G  H  F  H </first_frame>
            <second_frame>  A  K  R  R  L  K  R  W  K  R  K  R  N  K  R  R  K  R  R  *  R  R  R  R  K  I  R  S  I  K  M  L  *  M  K  L  K  E  M  K  S  R  Q  L  :  S  L  M  E  M  M  T  K  N  K  I  Q  *  M  K  L  N  I  M  H  G  M  N  *  D  F  I  H  C  S  *  N  R  Y  T  R  S  S  S  K  N  L  H  Q  Y  N  K  R  A  F  L  Q  V  L  T  K  E  R :   M  L  W  V  L  Q  R  Q  V  L  G  K  H  W  H  L  V  C  P  F  F  N  V  C  L  R  S  E  K  R  P  K  G  S  F  Q  K  M  E  N  W  M  I  K  L  P  P  Q  V  S  S  A  L  *  L  L  L  L  Q  E  S  L  P  F  R :   S  L  I  I  *  R  K  Q  Q  N  I  Q  I  L  G  L  S  L  L  L  V  E  C  Q  V  K  N  K  K  D  F  *  K  Q  G  L  K  L  L  S  E  L  R  G  G  F  G  S  L  C  L  V  V  K  L  I  S  W  S :   C  T  H  C  H  F  L  C  W  M  R  P  I  G  *  *  K  M  A  I  S   </second_frame>
            <third_frame>   Q  R  G  D  *  R  G  G  K  G  N  E  T  K  E  E  K  E  D  E  E  E  E  E  R  *  D  Q  *  R  C  C  K  *  S  *  R  K  *  R  A  A  S  C :   H  *  W  K  *  *  P  R  T  R  F  S  R  *  N  *  I  L  C  M  E  *  T  E  T  S  S  T  A  H  E  I  D  I  R  A  Q  V  Q  R  T  Y  T  N  T  T  S  V  H  S  C  R  F  S  P  R  K   : G  C  C  G  C  C  R  D  R  F  W  E  N  T  G  I  W  S  A  H  S  S  T  S  A  *  G  A  R  K  G  R  K  A  A  S  R  K  W  R  I  G  *  *  S  C  L  R  R  S  P  P  R  S  N  Y  Y  S  Y  K  R  A  C  P  S   : G  H  *  S  S  E  G  S  S  K  T  F  K  F  *  G  C  P  Y  C  W  W  N  V  K  *  K  T  R  K  T  F  E  N  K  A  *  N  C  C  R  N  S  G  E  A  L  G  A  Y  V  W  W  *  N  S  S  R  G   : V  A  L  T  V  I  F  C  A  G  *  G  R  S  D  D  R  K  W  P  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19369" stop="19501"/>
                    <exon start="20332" stop="20504"/>
                    <exon start="20590" stop="20784"/>
                    <exon start="21514" stop="21690"/>
                    <exon start="22241" stop="22306"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKEEIEEVEKETKQKKKKKMKKKKKDKINKDAVNEAEGNEEPPAVTDGNDDQEQDSVDETEYYAWNELRLHPLLMKSIYALKFKEPTPIQQACIPAGSHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKAERQLPENGELDDKVASAGLLRALIITPTRELALQVTDHLKEAAKHSNFRVVPIVGGMSSEKQERLLKTRPEIVVGTPGRLWELMSGGETHLVELHSLSFFVLDEADRMIENGHFH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="22367" PGL_stop="26821"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22367" e_stop="22623"/>
            <exon e_start="22936" e_stop="23116"/>
            <exon e_start="23525" e_stop="23647"/>
            <exon e_start="23725" e_stop="23841"/>
            <exon e_start="24283" e_stop="24387"/>
            <exon e_start="25528" e_stop="25668"/>
            <exon e_start="25825" e_stop="25890"/>
            <exon e_start="26097" e_stop="26249"/>
            <exon e_start="26356" e_stop="26437"/>
            <exon e_start="26542" e_stop="26821"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.976"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.360" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.603" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.878" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22367" e_stop="22623" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.912">
            <gDNA_intron_boundary i_start="22624" i_stop="22935" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="22936" e_stop="23116" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23117" i_stop="23524" i_length="408"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23525" e_stop="23647" e_length="123"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23648" i_stop="23724" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23725" e_stop="23841" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.967">
            <gDNA_intron_boundary i_start="23842" i_stop="24282" i_length="441"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24283" e_stop="24387" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.360" acc_prob="0.990">
            <gDNA_intron_boundary i_start="24388" i_stop="25527" i_length="1140"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25528" e_stop="25668" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.603" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25669" i_stop="25824" i_length="156"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25825" e_stop="25890" e_length="66"/>
          </exon>
          <intron i_serial="7" don_prob="0.926" acc_prob="0.996">
            <gDNA_intron_boundary i_start="25891" i_stop="26096" i_length="206"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="26097" e_stop="26249" e_length="153"/>
          </exon>
          <intron i_serial="8" don_prob="0.878" acc_prob="0.968">
            <gDNA_intron_boundary i_start="26250" i_stop="26355" i_length="106"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="26356" e_stop="26437" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26438" i_stop="26541" i_length="104"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="26542" e_stop="26821" e_length="280"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22367" stop="22623"/>
              <exon start="22936" stop="23100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22402" stop="22623"/>
              <exon start="22936" stop="23025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23027" stop="23116"/>
              <exon start="23525" stop="23647"/>
              <exon start="23725" stop="23841"/>
              <exon start="24283" stop="24387"/>
              <exon start="25528" stop="25668"/>
              <exon start="25825" stop="25890"/>
              <exon start="26097" stop="26249"/>
              <exon start="26356" stop="26437"/>
              <exon start="26542" stop="26568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26110" stop="26249"/>
              <exon start="26356" stop="26437"/>
              <exon start="26542" stop="26821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATCACAAAATTGTGAAACAGTTTCCAGTGTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGA : CTGCAGGGATGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTCTGTACGTCCATTGCAGCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAG : GCAATTGACCGGTTTCGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATTCCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAA : GTTTACGTTCATAGAAGTGGAAGAACTGCTAGGGCTCATTCTGATGGATGTAGCATTGCTCTAATCACACCAAATGATACCTCAAAGTTTGCTGCTTTATGCAGGTCGTTTTCAAAG : GATAACTTCCAGCGGTTTCCCTTAGAAATGTCATACATGCCTGAAGTTATGAAGCGATTATCCCTTGCACGTCAAATAGACAAGATTTCCCGAAAGGACTCTCAG : GACAAGGCCAAGAAAAATTGGCTTGAGCGAAGTGCTGAATTAATGGAACTAGATTTGGAAGATAATGATAGTGAGGAGGAAAGAGTGAACAATCATAAGCGAAAGAAAGCCACATCTGCTCAACTAACTAATCTACAAGAG : GAACTAAAAAGTCTTCTTTCACGGCCATTGCAACCCAAAACATTCTCAAAACGCTACTTGGCTGGG : GCTGGTGTTTCACCTCTCCTTCAGAACCAGCTGGAGGAATTAGCTAGACAGAAAAATTCAAATAATTCCGGAGATGTTAAAAGGAAGAAAATGATCGTCATTGGTCAGGATTGTGTCGAGCCCCTCCAGGCACTTAGGAGTGCTGGTCCAGAG : ACTAAGTTGAATCTGAAGGATATGGCTGAAAAACGGAGAGATATAACCGAGTTAAGGAGAAAGAGGAGAGAAACCAAAAAAC : GTTTGCGCGAACAACGACGAAAACAGAAGAAAAAACTTCAAGGAAAAGAGTGAGTCTTTGTCTATTCTCTTAGAGGATTCGAACTCGGGTATAGATTCTCTATGCTCATGTAAACGACTATGATGAAATTCGATAACTATATATCACTCAGCCAATTTTGTAGTTTACAGTTTTAAGTTAAAAAAAGGCCAAATCATGTTGTAAAAACTATATATTTATATCTGATAATTGGTTTTGAAATCAAATATTCAGTGAGATGTACAAGAGGAATTTCTTGAAA</gDNA_template>
            <first_frame> Q  K  S  Q  N  C  E  T  V  S  S  V  Q  R  K  K  R  Q  T  F  V  F  S  A  T  I  A  L  S  A  D  F  R  K  K  L  K  R  G  S  Q  K  S  K  A  N  D  E  L  N  S  I  E  T  L  S  E  R  A  G  M  R  A  D  A  A  I  I  D  L  T  N  A  S  I  L  A  N  K  L  E  E  S  F  I  D :   C  R  D  E  D  K  D  G  Y  L  Y  Y  I  L  S  V  H  G  Q  G  R  T  I  V  F  C  T  S  I  A  A  L  R  H  I  S  S  L  L  R  I  L  G  V  N  V  W  T  L  H  A  Q  M  Q  Q  R  A  R  L  K  :  A  I  D  R  F  R  G  H  E  H  G  I  L  I  A  T  D  V  A  A  R  G  L  D  I  P  G  V  R  T  V  I  H  Y  Q  L  P  H  S  A  E  :  V  Y  V  H  R  S  G  R  T  A  R  A  H  S  D  G  C  S  I  A  L  I  T  P  N  D  T  S  K  F  A  A  L  C  R  S  F  S  K  :  D  N  F  Q  R  F  P  L  E  M  S  Y  M  P  E  V  M  K  R  L  S  L  A  R  Q  I  D  K  I  S  R  K  D  S  Q  :  D  K  A  K  K  N  W  L  E  R  S  A  E  L  M  E  L  D  L  E  D  N  D  S  E  E  E  R  V  N  N  H  K  R  K  K  A  T  S  A  Q  L  T  N  L  Q  E  :  E  L  K  S  L  L  S  R  P  L  Q  P  K  T  F  S  K  R  Y  L  A  G  :  A  G  V  S  P  L  L  Q  N  Q  L  E  E  L  A  R  Q  K  N  S  N  N  S  G  D  V  K  R  K  K  M  I  V  I  G  Q  D  C  V  E  P  L  Q  A  L  R  S  A  G  P  E  :  T  K  L  N  L  K  D  M  A  E  K  R  R  D  I  T  E  L  R  R  K  R  R  E  T  K  K   : R  L  R  E  Q  R  R  K  Q  K  K  K  L  Q  G  K  E  *  V  F  V  Y  S  L  R  G  F  E  L  G  Y  R  F  S  M  L  M  *  T  T  M  M  K  F  D  N  Y  I  S  L  S  Q  F  C  S  L  Q  F  *  V  K  K  R  P  N  H  V  V  K  T  I  Y  L  Y  L  I  I  G  F  E  I  K  Y  S  V  R  C  T  R  G  I  S  *   </first_frame>
            <second_frame>  R  N  H  K  I  V  K  Q  F  P  V  S  K  E  R  K  G  K  H  L  C  F  L  Q  P  L  L  C  L  P  I  S  G  R  S  *  S  V  D  H  K  N  Q  K  Q  T  M  S  *  I  Q  *  K  L  C  L  R  E  Q  E  *  G  Q  M  R  Q  S  L  I  *  L  M  H  Q  F  *  P  T  S  S  R  S  R  L  *   : T  A  G  M  K  I  K  M  G  I  C  I  T  F  *  V  F  M  D  K  V  G  Q  L  S  S  V  R  P  L  Q  L  Y  A  I  S  P  P  S  C  A  S  L  A  S  M  S  G  H  F  M  P  R  C  N  R  E  L  D  L  R :   Q  L  T  G  F  G  D  M  S  M  V  Y  S  L  L  Q  M  L  Q  P  E  V  W  I  F  L  V  F  E  P  S  F  T  I  S  Y  L  I  Q  L  K :   F  T  F  I  E  V  E  E  L  L  G  L  I  L  M  D  V  A  L  L  *  S  H  Q  M  I  P  Q  S  L  L  L  Y  A  G  R  F  Q  R :   I  T  S  S  G  F  P  *  K  C  H  T  C  L  K  L  *  S  D  Y  P  L  H  V  K  *  T  R  F  P  E  R  T  L  R :   T  R  P  R  K  I  G  L  S  E  V  L  N  *  W  N  *  I  W  K  I  M  I  V  R  R  K  E  *  T  I  I  S  E  R  K  P  H  L  L  N  *  L  I  Y  K  R :   N  *  K  V  F  F  H  G  H  C  N  P  K  H  S  Q  N  A  T  W  L  G :   L  V  F  H  L  S  F  R  T  S  W  R  N  *  L  D  R  K  I  Q  I  I  P  E  M  L  K  G  R  K  *  S  S  L  V  R  I  V  S  S  P  S  R  H  L  G  V  L  V  Q  R :   L  S  *  I  *  R  I  W  L  K  N  G  E  I  *  P  S  *  G  E  R  G  E  K  P  K  N  :  V  C  A  N  N  D  E  N  R  R  K  N  F  K  E  K  S  E  S  L  S  I  L  L  E  D  S  N  S  G  I  D  S  L  C  S  C  K  R  L  *  *  N  S  I  T  I  Y  H  S  A  N  F  V  V  Y  S  F  K  L  K  K  G  Q  I  M  L  *  K  L  Y  I  Y  I  *  *  L  V  L  K  S  N  I  Q  *  D  V  Q  E  E  F  L  E  </second_frame>
            <third_frame>   E  I  T  K  L  *  N  S  F  Q  C  P  K  K  E  K  A  N  I  C  V  F  C  N  H  C  F  V  C  R  F  Q  E  E  A  K  A  W  I  T  K  I  K  S  K  R  *  V  E  F  N  R  N  S  V  *  E  S  R  N  E  G  R  C  G  N  H  *  S  D  *  C  I  N  S  S  Q  Q  A  R  G  V  V  Y  R  :  L  Q  G  *  R  *  R  W  V  F  V  L  H  F  E  C  S  W  T  R  S  D  N  C  L  L  Y  V  H  C  S  F  T  P  Y  L  L  P  L  A  H  P  W  R  Q  C  L  D  T  S  C  P  D  A  T  E  S  S  T  *   : G  N  *  P  V  S  G  T  *  A  W  Y  T  H  C  Y  R  C  C  S  Q  R  F  G  Y  S  W  C  S  N  R  H  S  L  S  A  T  S  F  S  *   : S  L  R  S  *  K  W  K  N  C  *  G  S  F  *  W  M  *  H  C  S  N  H  T  K  *  Y  L  K  V  C  C  F  M  Q  V  V  F  K   : G  *  L  P  A  V  S  L  R  N  V  I  H  A  *  S  Y  E  A  I  I  P  C  T  S  N  R  Q  D  F  P  K  G  L  S   : G  Q  G  Q  E  K  L  A  *  A  K  C  *  I  N  G  T  R  F  G  R  *  *  *  *  G  G  K  S  E  Q  S  *  A  K  E  S  H  I  C  S  T  N  *  S  T  R   : G  T  K  K  S  S  F  T  A  I  A  T  Q  N  I  L  K  T  L  L  G  W   : G  W  C  F  T  S  P  S  E  P  A  G  G  I  S  *  T  E  K  F  K  *  F  R  R  C  *  K  E  E  N  D  R  H  W  S  G  L  C  R  A  P  P  G  T  *  E  C  W  S  R   : D  *  V  E  S  E  G  Y  G  *  K  T  E  R  Y  N  R  V  K  E  K  E  E  R  N  Q  K  T :   F  A  R  T  T  T  K  T  E  E  K  T  S  R  K  R  V  S  L  C  L  F  S  *  R  I  R  T  R  V  *  I  L  Y  A  H  V  N  D  Y  D  E  I  R  *  L  Y  I  T  Q  P  I  L  *  F  T  V  L  S  *  K  K  A  K  S  C  C  K  N  Y  I  F  I  S  D  N  W  F  *  N  Q  I  F  S  E  M  Y  K  R  N  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22367" stop="22623"/>
                    <exon start="22936" stop="23116"/>
                    <exon start="23525" stop="23647"/>
                    <exon start="23725" stop="23841"/>
                    <exon start="24283" stop="24387"/>
                    <exon start="25528" stop="25668"/>
                    <exon start="25825" stop="25890"/>
                    <exon start="26097" stop="26249"/>
                    <exon start="26356" stop="26437"/>
                    <exon start="26542" stop="26594"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1275</number_coding_nucleotides>
                  <number_encoded_amino_acids>425</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKSQNCETVSSVQRKKRQTFVFSATIALSADFRKKLKRGSQKSKANDELNSIETLSERAGMRADAAIIDLTNASILANKLEESFIDCRDEDKDGYLYYILSVHGQGRTIVFCTSIAALRHISSLLRILGVNVWTLHAQMQQRARLKAIDRFRGHEHGILIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARAHSDGCSIALITPNDTSKFAALCRSFSKDNFQRFPLEMSYMPEVMKRLSLARQIDKISRKDSQDKAKKNWLERSAELMELDLEDNDSEEERVNNHKRKKATSAQLTNLQEELKSLLSRPLQPKTFSKRYLAGAGVSPLLQNQLEELARQKNSNNSGDVKRKKMIVIGQDCVEPLQALRSAGPETKLNLKDMAEKRRDITELRRKRRETKKRLREQRRKQKKKLQGKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22367" e_stop="22623"/>
            <exon e_start="22936" e_stop="23116"/>
            <exon e_start="23525" e_stop="23662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22367" e_stop="22623" e_length="257"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.912">
            <gDNA_intron_boundary i_start="22624" i_stop="22935" i_length="312"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="22936" e_stop="23116" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23117" i_stop="23524" i_length="408"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="23525" e_stop="23662" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22367" stop="22623"/>
              <exon start="22936" stop="23116"/>
              <exon start="23525" stop="23662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22367" stop="22623"/>
              <exon start="22936" stop="23100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22402" stop="22623"/>
              <exon start="22936" stop="23025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATCACAAAATTGTGAAACAGTTTCCAGTGTCCAAAGAAAGAAAAGGCAAACATTTGTGTTTTCTGCAACCATTGCTTTGTCTGCCGATTTCAGGAAGAAGCTAAAGCGTGGATCACAAAAATCAAAAGCAAACGATGAGTTGAATTCAATAGAAACTCTGTCTGAGAGAGCAGGAATGAGGGCAGATGCGGCAATCATTGATCTGACTAATGCATCAATTCTAGCCAACAAGCTCGAGGAGTCGTTTATAGA : CTGCAGGGATGAAGATAAAGATGGGTATTTGTATTACATTTTGAGTGTTCATGGACAAGGTCGGACAATTGTCTTCTGTACGTCCATTGCAGCTTTACGCCATATCTCCTCCCTCTTGCGCATCCTTGGCGTCAATGTCTGGACACTTCATGCCCAGATGCAACAGAGAGCTCGACTTAAG : GCAATTGACCGGTTTCGGGGACATGAGCATGGTATACTCATTGCTACAGATGTTGCAGCCAGAGGTTTGGATATTCCTGGTGTTCGAACCGTCATTCACTATCAGCTACCTCATTCAGCTGAAGTAAGTTCGTAATGT</gDNA_template>
            <first_frame> Q  K  S  Q  N  C  E  T  V  S  S  V  Q  R  K  K  R  Q  T  F  V  F  S  A  T  I  A  L  S  A  D  F  R  K  K  L  K  R  G  S  Q  K  S  K  A  N  D  E  L  N  S  I  E  T  L  S  E  R  A  G  M  R  A  D  A  A  I  I  D  L  T  N  A  S  I  L  A  N  K  L  E  E  S  F  I  D :   C  R  D  E  D  K  D  G  Y  L  Y  Y  I  L  S  V  H  G  Q  G  R  T  I  V  F  C  T  S  I  A  A  L  R  H  I  S  S  L  L  R  I  L  G  V  N  V  W  T  L  H  A  Q  M  Q  Q  R  A  R  L  K  :  A  I  D  R  F  R  G  H  E  H  G  I  L  I  A  T  D  V  A  A  R  G  L  D  I  P  G  V  R  T  V  I  H  Y  Q  L  P  H  S  A  E  V  S  S  *  C </first_frame>
            <second_frame>  R  N  H  K  I  V  K  Q  F  P  V  S  K  E  R  K  G  K  H  L  C  F  L  Q  P  L  L  C  L  P  I  S  G  R  S  *  S  V  D  H  K  N  Q  K  Q  T  M  S  *  I  Q  *  K  L  C  L  R  E  Q  E  *  G  Q  M  R  Q  S  L  I  *  L  M  H  Q  F  *  P  T  S  S  R  S  R  L  *   : T  A  G  M  K  I  K  M  G  I  C  I  T  F  *  V  F  M  D  K  V  G  Q  L  S  S  V  R  P  L  Q  L  Y  A  I  S  P  P  S  C  A  S  L  A  S  M  S  G  H  F  M  P  R  C  N  R  E  L  D  L  R :   Q  L  T  G  F  G  D  M  S  M  V  Y  S  L  L  Q  M  L  Q  P  E  V  W  I  F  L  V  F  E  P  S  F  T  I  S  Y  L  I  Q  L  K  *  V  R  N   </second_frame>
            <third_frame>   E  I  T  K  L  *  N  S  F  Q  C  P  K  K  E  K  A  N  I  C  V  F  C  N  H  C  F  V  C  R  F  Q  E  E  A  K  A  W  I  T  K  I  K  S  K  R  *  V  E  F  N  R  N  S  V  *  E  S  R  N  E  G  R  C  G  N  H  *  S  D  *  C  I  N  S  S  Q  Q  A  R  G  V  V  Y  R  :  L  Q  G  *  R  *  R  W  V  F  V  L  H  F  E  C  S  W  T  R  S  D  N  C  L  L  Y  V  H  C  S  F  T  P  Y  L  L  P  L  A  H  P  W  R  Q  C  L  D  T  S  C  P  D  A  T  E  S  S  T  *   : G  N  *  P  V  S  G  T  *  A  W  Y  T  H  C  Y  R  C  C  S  Q  R  F  G  Y  S  W  C  S  N  R  H  S  L  S  A  T  S  F  S  *  S  K  F  V  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22367" stop="22623"/>
                    <exon start="22936" stop="23116"/>
                    <exon start="23525" stop="23659"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKSQNCETVSSVQRKKRQTFVFSATIALSADFRKKLKRGSQKSKANDELNSIETLSERAGMRADAAIIDLTNASILANKLEESFIDCRDEDKDGYLYYILSVHGQGRTIVFCTSIAALRHISSLLRILGVNVWTLHAQMQQRARLKAIDRFRGHEHGILIATDVAARGLDIPGVRTVIHYQLPHSAEVSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="30811" PGL_stop="32569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30811" e_stop="32569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="30811" e_stop="32569" e_length="1759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30811" stop="31643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30821" stop="31286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30825" stop="32569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30855" stop="31502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30857" stop="31653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30858" stop="31239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31381" stop="31937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31416" stop="31951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31438" stop="31892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31519" stop="32362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31786" stop="32051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTAATAAGACTCTCCCCTTCATCTTCTTCGCACCCACCCACCCCTCTACCCCACCCCCACCCCACCAATGGCTTGTTCCGTCGATACTCTCGCTCCGTTCCTCGGTCCTAACACCACCAACGCCGTCGCCGCCGCTTCATACATCTGCAACCAATTTTCAGGTGTATCGGACAGATTCGTCGATACCGGTTATGCAATCGATTCTACATATCTCCTCTTCTCTGCTTATCTCGTTTTCTCCATGCAGCTTGGTTTCGCTATGCTTTGCGCGGGCTCTGTCCGCGCAAAAAATACAATGAACATTATGCTCACGAACGTCCTCGATGCCGCCGCCGGTGGACTTTTTTACTATCTATTCGGATTCGCTTTTGCTTGGGGTGGTCCGTCTAATGGATTCATCGGCCGACATTTTTTCGGGCTTAAAGAGATCCCGTCAAATTCATTCGATTACAGTAATTTCCTCTATCAATGGGCTTTCGCCATCGCCGCCGCCGGTATCACCAGCGGTTCAATCGCCGAACGAACCCAATTTGTTGCCTATTTGATTTATTCCTCTTTTCTAACGGGTTTCGTTTACCCGGTTGTTTCTCATTGGTTTTGGACCCCAGATGGGTGGGCTAGCCCGACTAATTCAAATCTATTATTCGGATCCGGTGTAATCGATTTCGCCGGGTCGGGTGTAGTTCATATGGTAGGTGGAATCGCCGGGTTTTACGGAGCTTTGATTGAAGGTCCACGAATCGGGCGGTACGATCATACGGGTCGATCCGTTGCGCTTCGTGGACATAGCGCGTCACTCGTGGTTCTAGGCACCTTTTTATTATGGTTCGGATGGTACGGATTTAACCCCGGTTCATTTAATAAAATCCTAGTTACTTACGGTGCATCCGGAGGGTATTATGGTCAATGGAGCGCTGTAGGACGTACCGCGGTTACAACTACCCTAGCCGGTTGCACCGCAGCCCTAACGACTCTTTTCGGTAAACGTATCCTTTCGGGTCATTGGAACGTAACCGATGTATGTAACGGTTTACTAGGCGGATTTGCAGCGATCACGGCTGGGTGCTCGGTCGTCGAGCCGTGGGCCGCGATTATATGTGGGTTCGTAGCGGCTTTAGTTTTAATTGGTTTTAACATGTTAGCGGAAAAATTTAAATACGACGATCCACTTGAAGCAGCACAATTACATGGGGGTTGTGGTGCATGGGGGATAATTTTTACCGGGTTATTCGCTAAAGGGGAGTTTGTGGATCAAGTATACCCGGGTAAACCGGGTCGACCTCACGGGTTATTTATGGGTGGTGGAGGGAAACTACTCGGGGCGCATATAATCCAGATACTCGTTATAATCGGGTGGGTCAGCGCGACAATGGGTCCGCTTTTTTATATACTTCATAAATTCAAGTTGCTTCGGATATCGTCCGAAGACGAAATGGCGGGTATGGATCTGACCCGACATGGTGGGTTTGCTTATTATCATGAAGAGGATCCGAAATTAGGAATGCAAATGAGAAGAATTGAACCAACAACCTCAACTTAGAAAAAAAAATAAAAAAAAAAATTATCTTTTTATTTATGTATCTTTGAATTGTCTAGTTTATATTTTTATAAAATTAATATTAGGGTGTTTGTGAAAAGAAAAAAAAAATAGTGGATTTTTTTAATGGTAAAAATGAGTGGTTGTGTATGAAGATAATGTGAACATGTCCTCTTTTATTATTTTCTACTAGTTATCTATATTTGACTATTAATATCCA</gDNA_template>
            <first_frame> F  *  *  D  S  P  L  H  L  L  R  T  H  P  P  L  Y  P  T  P  T  P  P  M  A  C  S  V  D  T  L  A  P  F  L  G  P  N  T  T  N  A  V  A  A  A  S  Y  I  C  N  Q  F  S  G  V  S  D  R  F  V  D  T  G  Y  A  I  D  S  T  Y  L  L  F  S  A  Y  L  V  F  S  M  Q  L  G  F  A  M  L  C  A  G  S  V  R  A  K  N  T  M  N  I  M  L  T  N  V  L  D  A  A  A  G  G  L  F  Y  Y  L  F  G  F  A  F  A  W  G  G  P  S  N  G  F  I  G  R  H  F  F  G  L  K  E  I  P  S  N  S  F  D  Y  S  N  F  L  Y  Q  W  A  F  A  I  A  A  A  G  I  T  S  G  S  I  A  E  R  T  Q  F  V  A  Y  L  I  Y  S  S  F  L  T  G  F  V  Y  P  V  V  S  H  W  F  W  T  P  D  G  W  A  S  P  T  N  S  N  L  L  F  G  S  G  V  I  D  F  A  G  S  G  V  V  H  M  V  G  G  I  A  G  F  Y  G  A  L  I  E  G  P  R  I  G  R  Y  D  H  T  G  R  S  V  A  L  R  G  H  S  A  S  L  V  V  L  G  T  F  L  L  W  F  G  W  Y  G  F  N  P  G  S  F  N  K  I  L  V  T  Y  G  A  S  G  G  Y  Y  G  Q  W  S  A  V  G  R  T  A  V  T  T  T  L  A  G  C  T  A  A  L  T  T  L  F  G  K  R  I  L  S  G  H  W  N  V  T  D  V  C  N  G  L  L  G  G  F  A  A  I  T  A  G  C  S  V  V  E  P  W  A  A  I  I  C  G  F  V  A  A  L  V  L  I  G  F  N  M  L  A  E  K  F  K  Y  D  D  P  L  E  A  A  Q  L  H  G  G  C  G  A  W  G  I  I  F  T  G  L  F  A  K  G  E  F  V  D  Q  V  Y  P  G  K  P  G  R  P  H  G  L  F  M  G  G  G  G  K  L  L  G  A  H  I  I  Q  I  L  V  I  I  G  W  V  S  A  T  M  G  P  L  F  Y  I  L  H  K  F  K  L  L  R  I  S  S  E  D  E  M  A  G  M  D  L  T  R  H  G  G  F  A  Y  Y  H  E  E  D  P  K  L  G  M  Q  M  R  R  I  E  P  T  T  S  T  *  K  K  K  *  K  K  K  L  S  F  Y  L  C  I  F  E  L  S  S  L  Y  F  Y  K  I  N  I  R  V  F  V  K  R  K  K  K  *  W  I  F  L  M  V  K  M  S  G  C  V  *  R  *  C  E  H  V  L  F  Y  Y  F  L  L  V  I  Y  I  *  L  L  I  S  </first_frame>
            <second_frame>  F  N  K  T  L  P  F  I  F  F  A  P  T  H  P  S  T  P  P  P  P  H  Q  W  L  V  P  S  I  L  S  L  R  S  S  V  L  T  P  P  T  P  S  P  P  L  H  T  S  A  T  N  F  Q  V  Y  R  T  D  S  S  I  P  V  M  Q  S  I  L  H  I  S  S  S  L  L  I  S  F  S  P  C  S  L  V  S  L  C  F  A  R  A  L  S  A  Q  K  I  Q  *  T  L  C  S  R  T  S  S  M  P  P  P  V  D  F  F  T  I  Y  S  D  S  L  L  L  G  V  V  R  L  M  D  S  S  A  D  I  F  S  G  L  K  R  S  R  Q  I  H  S  I  T  V  I  S  S  I  N  G  L  S  P  S  P  P  P  V  S  P  A  V  Q  S  P  N  E  P  N  L  L  P  I  *  F  I  P  L  F  *  R  V  S  F  T  R  L  F  L  I  G  F  G  P  Q  M  G  G  L  A  R  L  I  Q  I  Y  Y  S  D  P  V  *  S  I  S  P  G  R  V  *  F  I  W  *  V  E  S  P  G  F  T  E  L  *  L  K  V  H  E  S  G  G  T  I  I  R  V  D  P  L  R  F  V  D  I  A  R  H  S  W  F  *  A  P  F  Y  Y  G  S  D  G  T  D  L  T  P  V  H  L  I  K  S  *  L  L  T  V  H  P  E  G  I  M  V  N  G  A  L  *  D  V  P  R  L  Q  L  P  *  P  V  A  P  Q  P  *  R  L  F  S  V  N  V  S  F  R  V  I  G  T  *  P  M  Y  V  T  V  Y  *  A  D  L  Q  R  S  R  L  G  A  R  S  S  S  R  G  P  R  L  Y  V  G  S  *  R  L  *  F  *  L  V  L  T  C  *  R  K  N  L  N  T  T  I  H  L  K  Q  H  N  Y  M  G  V  V  V  H  G  G  *  F  L  P  G  Y  S  L  K  G  S  L  W  I  K  Y  T  R  V  N  R  V  D  L  T  G  Y  L  W  V  V  E  G  N  Y  S  G  R  I  *  S  R  Y  S  L  *  S  G  G  S  A  R  Q  W  V  R  F  F  I  Y  F  I  N  S  S  C  F  G  Y  R  P  K  T  K  W  R  V  W  I  *  P  D  M  V  G  L  L  I  I  M  K  R  I  R  N  *  E  C  K  *  E  E  L  N  Q  Q  P  Q  L  R  K  K  N  K  K  K  N  Y  L  F  I  Y  V  S  L  N  C  L  V  Y  I  F  I  K  L  I  L  G  C  L  *  K  E  K  K  N  S  G  F  F  *  W  *  K  *  V  V  V  Y  E  D  N  V  N  M  S  S  F  I  I  F  Y  *  L  S  I  F  D  Y  *  Y  P </second_frame>
            <third_frame>   L  I  R  L  S  P  S  S  S  S  H  P  P  T  P  L  P  H  P  H  P  T  N  G  L  F  R  R  Y  S  R  S  V  P  R  S  *  H  H  Q  R  R  R  R  R  F  I  H  L  Q  P  I  F  R  C  I  G  Q  I  R  R  Y  R  L  C  N  R  F  Y  I  S  P  L  L  C  L  S  R  F  L  H  A  A  W  F  R  Y  A  L  R  G  L  C  P  R  K  K  Y  N  E  H  Y  A  H  E  R  P  R  C  R  R  R  W  T  F  L  L  S  I  R  I  R  F  C  L  G  W  S  V  *  W  I  H  R  P  T  F  F  R  A  *  R  D  P  V  K  F  I  R  L  Q  *  F  P  L  S  M  G  F  R  H  R  R  R  R  Y  H  Q  R  F  N  R  R  T  N  P  I  C  C  L  F  D  L  F  L  F  S  N  G  F  R  L  P  G  C  F  S  L  V  L  D  P  R  W  V  G  *  P  D  *  F  K  S  I  I  R  I  R  C  N  R  F  R  R  V  G  C  S  S  Y  G  R  W  N  R  R  V  L  R  S  F  D  *  R  S  T  N  R  A  V  R  S  Y  G  S  I  R  C  A  S  W  T  *  R  V  T  R  G  S  R  H  L  F  I  M  V  R  M  V  R  I  *  P  R  F  I  *  *  N  P  S  Y  L  R  C  I  R  R  V  L  W  S  M  E  R  C  R  T  Y  R  G  Y  N  Y  P  S  R  L  H  R  S  P  N  D  S  F  R  *  T  Y  P  F  G  S  L  E  R  N  R  C  M  *  R  F  T  R  R  I  C  S  D  H  G  W  V  L  G  R  R  A  V  G  R  D  Y  M  W  V  R  S  G  F  S  F  N  W  F  *  H  V  S  G  K  I  *  I  R  R  S  T  *  S  S  T  I  T  W  G  L  W  C  M  G  D  N  F  Y  R  V  I  R  *  R  G  V  C  G  S  S  I  P  G  *  T  G  S  T  S  R  V  I  Y  G  W  W  R  E  T  T  R  G  A  Y  N  P  D  T  R  Y  N  R  V  G  Q  R  D  N  G  S  A  F  L  Y  T  S  *  I  Q  V  A  S  D  I  V  R  R  R  N  G  G  Y  G  S  D  P  T  W  W  V  C  L  L  S  *  R  G  S  E  I  R  N  A  N  E  K  N  *  T  N  N  L  N  L  E  K  K  I  K  K  K  I  I  F  L  F  M  Y  L  *  I  V  *  F  I  F  L  *  N  *  Y  *  G  V  C  E  K  K  K  K  I  V  D  F  F  N  G  K  N  E  W  L  C  M  K  I  M  *  T  C  P  L  L  L  F  S  T  S  Y  L  Y  L  T  I  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30820" stop="32352"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSPLHLLRTHPPLYPTPTPPMACSVDTLAPFLGPNTTNAVAAASYICNQFSGVSDRFVDTGYAIDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAWGGPSNGFIGRHFFGLKEIPSNSFDYSNFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWTPDGWASPTNSNLLFGSGVIDFAGSGVVHMVGGIAGFYGALIEGPRIGRYDHTGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFNKILVTYGASGGYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLIGFNMLAEKFKYDDPLEAAQLHGGCGAWGIIFTGLFAKGEFVDQVYPGKPGRPHGLFMGGGGKLLGAHIIQILVIIGWVSATMGPLFYILHKFKLLRISSEDEMAGMDLTRHGGFAYYHEEDPKLGMQMRRIEPTTST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="39929" PGL_stop="45043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39929" e_stop="40153"/>
            <exon e_start="41113" e_stop="41559"/>
            <exon e_start="42159" e_stop="42239"/>
            <exon e_start="43499" e_stop="43695"/>
            <exon e_start="43781" e_stop="43880"/>
            <exon e_start="44596" e_stop="45043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.682" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39929" e_stop="40153" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="40154" i_stop="41112" i_length="959"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41113" e_stop="41559" e_length="447"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41560" i_stop="42158" i_length="599"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42159" e_stop="42239" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.960">
            <gDNA_intron_boundary i_start="42240" i_stop="43498" i_length="1259"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43499" e_stop="43695" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="43696" i_stop="43780" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43781" e_stop="43880" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.682" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43881" i_stop="44595" i_length="715"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="44596" e_stop="45043" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39929" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39939" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39944" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39959" stop="40153"/>
              <exon start="41113" stop="41538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39959" stop="40153"/>
              <exon start="41113" stop="41339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39964" stop="40153"/>
              <exon start="41113" stop="41280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39970" stop="40153"/>
              <exon start="41113" stop="41416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39976" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39978" stop="40153"/>
              <exon start="41113" stop="41556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39981" stop="40153"/>
              <exon start="41113" stop="41525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39982" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39987" stop="40153"/>
              <exon start="41113" stop="41371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39988" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39993" stop="40153"/>
              <exon start="41113" stop="41516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40008" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40017" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40061" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40124" stop="40153"/>
              <exon start="41113" stop="41472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40126" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40126" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40127" stop="40153"/>
              <exon start="41113" stop="41559"/>
              <exon start="42159" stop="42203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41124" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43695"/>
              <exon start="43781" stop="43789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41124" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41134" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41237" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43695"/>
              <exon start="43781" stop="43824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41330" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43695"/>
              <exon start="43781" stop="43880"/>
              <exon start="44596" stop="44850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41477" stop="41559"/>
              <exon start="42159" stop="42239"/>
              <exon start="43499" stop="43695"/>
              <exon start="43781" stop="43880"/>
              <exon start="44596" stop="44924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42172" stop="42239"/>
              <exon start="43499" stop="43695"/>
              <exon start="43781" stop="43880"/>
              <exon start="44596" stop="44971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42172" stop="42239"/>
              <exon start="43499" stop="43695"/>
              <exon start="43781" stop="43880"/>
              <exon start="44596" stop="44850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43527" stop="43695"/>
              <exon start="43781" stop="43880"/>
              <exon start="44596" stop="45043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43565" stop="43695"/>
              <exon start="43781" stop="43880"/>
              <exon start="44596" stop="44993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603141" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44601" stop="44959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTTTAGAACTTCTTGTTTCTTTCTTCATCGTCTTCATCAAGAGAGAGATTTTTTCGAACACTGAATCAGCCATGGCGGCTCTACAGTATTTGGAATCGCTACGCAATGATCATCCAGAGCTTTCTGATTGGTACACGACGCTTGCAGATCTGTACCAACGCAAGCTCTGGCACCAGCTCTCTCTCAAGCTCGAACAGTTTGTCGCTCTCGCTGTTTTTCAG : GCTGGTGACACGTTGATACAGCTGTATCACAATTTCATCACTGATTTTGAGACAAAGATCAATCTTCTGAAGCTTGCACATTTCGCTGTAATCGTCTCTCGGCAATATTCGGAGAAAGATGCTGGAATAGGTTATCTGGAAGGAGTAGCAGAGAAGCTCCAAAATACTAAAGAGACACGGATAGAGGAACCAATACTTTATATTAAGTTGCAGATTGCCCTATTTAAGCTAGAACAAGGGGATCAAAAAGAGTGCAAGAGGCTTTTAGAACAGGGGAATGCTACAATTGACAGCATGACCGATGTTGACCCCTCTGTTTATGCCAGTTACTATTGGGTTTCATCTCAGTATCATAAAACGCGGCAGGAATTTGCAGAGTTTTACAAAAGCGCTCTCCTCTATCTTGCATACGTTTCAGTGGATTCTCTTTCGGAGTCATTCAAGCTG : GATTTGGCGTTTGATTTGTCCTTGTCTGCTTTACTGGGAGACAACGTATACAATTTTGGGGAGTTGCTTGCTCATCCTATA : ATAAAGAGTTTGGTAGGGACACAAGTTGAATGGCTATATCATATCCTTGAAGCATTCAACACTGGTGATTTAGTTCGTTATCAAGAATTGTGCCGTGTCCATAAAGCTGCTTTAAGTGCTCAACCAGCATTATTGCAGAACGAGAAAAAGCTTCTCGAGAAGATCAACATTCTGTGCTTGATGGAAATCATCTTCAG : TCGCCCAGCAGAGGATAGAACTATTCCATTGAGTGCCATTGCAGAGCGCACTAAACTTAGCGTGGAAGATGTAGAGTATCTCTTAATGAAGAGTCTCTCT : GTACATCTGATAGAGGGAATAATCGATCAAGTGGAAGGGACTGTTCACGTGTCCTGGGTTCAACCAAGAGTTTTGGGTGTTCCTCAGATCAAGTCACTGCGAGATCGGCTAGACAATTGGGTGGATAAAGTACACACTGCCTTGTTATCTGTGGAAGCTGAAACTCCTGATTTGGTTTCATCATAATCTTAGTTTCCCAGTTTGCACTTCCTGGTCCCTGCAGCACTCCGATTTCTTCGTCCTCTCTTTTTTGCTGTGCTTACGAGAGCTTGTAACACAACAGAGGAATTTTGTGAGACATTTGTTTAGTTTTCTCAGGCCTACACTCTGTACTGTGGCTTATATCCCAAATCATTGATCTGTCACTGTTTTCTGGATTTAGGTGCTTGTTCAGTCACCACTTTGTAGTCTATAGACTACTATAGCGACGACATCGTCTTAACGGTTT</gDNA_template>
            <first_frame> I  F  L  E  L  L  V  S  F  F  I  V  F  I  K  R  E  I  F  S  N  T  E  S  A  M  A  A  L  Q  Y  L  E  S  L  R  N  D  H  P  E  L  S  D  W  Y  T  T  L  A  D  L  Y  Q  R  K  L  W  H  Q  L  S  L  K  L  E  Q  F  V  A  L  A  V  F  Q  :  A  G  D  T  L  I  Q  L  Y  H  N  F  I  T  D  F  E  T  K  I  N  L  L  K  L  A  H  F  A  V  I  V  S  R  Q  Y  S  E  K  D  A  G  I  G  Y  L  E  G  V  A  E  K  L  Q  N  T  K  E  T  R  I  E  E  P  I  L  Y  I  K  L  Q  I  A  L  F  K  L  E  Q  G  D  Q  K  E  C  K  R  L  L  E  Q  G  N  A  T  I  D  S  M  T  D  V  D  P  S  V  Y  A  S  Y  Y  W  V  S  S  Q  Y  H  K  T  R  Q  E  F  A  E  F  Y  K  S  A  L  L  Y  L  A  Y  V  S  V  D  S  L  S  E  S  F  K  L  :  D  L  A  F  D  L  S  L  S  A  L  L  G  D  N  V  Y  N  F  G  E  L  L  A  H  P  I  :  I  K  S  L  V  G  T  Q  V  E  W  L  Y  H  I  L  E  A  F  N  T  G  D  L  V  R  Y  Q  E  L  C  R  V  H  K  A  A  L  S  A  Q  P  A  L  L  Q  N  E  K  K  L  L  E  K  I  N  I  L  C  L  M  E  I  I  F  S :   R  P  A  E  D  R  T  I  P  L  S  A  I  A  E  R  T  K  L  S  V  E  D  V  E  Y  L  L  M  K  S  L  S  :  V  H  L  I  E  G  I  I  D  Q  V  E  G  T  V  H  V  S  W  V  Q  P  R  V  L  G  V  P  Q  I  K  S  L  R  D  R  L  D  N  W  V  D  K  V  H  T  A  L  L  S  V  E  A  E  T  P  D  L  V  S  S  *  S  *  F  P  S  L  H  F  L  V  P  A  A  L  R  F  L  R  P  L  F  F  A  V  L  T  R  A  C  N  T  T  E  E  F  C  E  T  F  V  *  F  S  Q  A  Y  T  L  Y  C  G  L  Y  P  K  S  L  I  C  H  C  F  L  D  L  G  A  C  S  V  T  T  L  *  S  I  D  Y  Y  S  D  D  I  V  L  T  V  </first_frame>
            <second_frame>  F  F  *  N  F  L  F  L  S  S  S  S  S  S  R  E  R  F  F  R  T  L  N  Q  P  W  R  L  Y  S  I  W  N  R  Y  A  M  I  I  Q  S  F  L  I  G  T  R  R  L  Q  I  C  T  N  A  S  S  G  T  S  S  L  S  S  S  N  S  L  S  L  S  L  F  F  R :   L  V  T  R  *  Y  S  C  I  T  I  S  S  L  I  L  R  Q  R  S  I  F  *  S  L  H  I  S  L  *  S  S  L  G  N  I  R  R  K  M  L  E  *  V  I  W  K  E  *  Q  R  S  S  K  I  L  K  R  H  G  *  R  N  Q  Y  F  I  L  S  C  R  L  P  Y  L  S  *  N  K  G  I  K  K  S  A  R  G  F  *  N  R  G  M  L  Q  L  T  A  *  P  M  L  T  P  L  F  M  P  V  T  I  G  F  H  L  S  I  I  K  R  G  R  N  L  Q  S  F  T  K  A  L  S  S  I  L  H  T  F  Q  W  I  L  F  R  S  H  S  S  W :   I  W  R  L  I  C  P  C  L  L  Y  W  E  T  T  Y  T  I  L  G  S  C  L  L  I  L  * :   *  R  V  W  *  G  H  K  L  N  G  Y  I  I  S  L  K  H  S  T  L  V  I  *  F  V  I  K  N  C  A  V  S  I  K  L  L  *  V  L  N  Q  H  Y  C  R  T  R  K  S  F  S  R  R  S  T  F  C  A  *  W  K  S  S  S   : V  A  Q  Q  R  I  E  L  F  H  *  V  P  L  Q  S  A  L  N  L  A  W  K  M  *  S  I  S  *  *  R  V  S  L :   Y  I  *  *  R  E  *  S  I  K  W  K  G  L  F  T  C  P  G  F  N  Q  E  F  W  V  F  L  R  S  S  H  C  E  I  G  *  T  I  G  W  I  K  Y  T  L  P  C  Y  L  W  K  L  K  L  L  I  W  F  H  H  N  L  S  F  P  V  C  T  S  W  S  L  Q  H  S  D  F  F  V  L  S  F  L  L  C  L  R  E  L  V  T  Q  Q  R  N  F  V  R  H  L  F  S  F  L  R  P  T  L  C  T  V  A  Y  I  P  N  H  *  S  V  T  V  F  W  I  *  V  L  V  Q  S  P  L  C  S  L  *  T  T  I  A  T  T  S  S  *  R  F </second_frame>
            <third_frame>   F  F  R  T  S  C  F  F  L  H  R  L  H  Q  E  R  D  F  F  E  H  *  I  S  H  G  G  S  T  V  F  G  I  A  T  Q  *  S  S  R  A  F  *  L  V  H  D  A  C  R  S  V  P  T  Q  A  L  A  P  A  L  S  Q  A  R  T  V  C  R  S  R  C  F  S   : G  W  *  H  V  D  T  A  V  S  Q  F  H  H  *  F  *  D  K  D  Q  S  S  E  A  C  T  F  R  C  N  R  L  S  A  I  F  G  E  R  C  W  N  R  L  S  G  R  S  S  R  E  A  P  K  Y  *  R  D  T  D  R  G  T  N  T  L  Y  *  V  A  D  C  P  I  *  A  R  T  R  G  S  K  R  V  Q  E  A  F  R  T  G  E  C  Y  N  *  Q  H  D  R  C  *  P  L  C  L  C  Q  L  L  L  G  F  I  S  V  S  *  N  A  A  G  I  C  R  V  L  Q  K  R  S  P  L  S  C  I  R  F  S  G  F  S  F  G  V  I  Q  A   : G  F  G  V  *  F  V  L  V  C  F  T  G  R  Q  R  I  Q  F  W  G  V  A  C  S  S  Y   : N  K  E  F  G  R  D  T  S  *  M  A  I  S  Y  P  *  S  I  Q  H  W  *  F  S  S  L  S  R  I  V  P  C  P  *  S  C  F  K  C  S  T  S  I  I  A  E  R  E  K  A  S  R  E  D  Q  H  S  V  L  D  G  N  H  L  Q  :  S  P  S  R  G  *  N  Y  S  I  E  C  H  C  R  A  H  *  T  *  R  G  R  C  R  V  S  L  N  E  E  S  L   : C  T  S  D  R  G  N  N  R  S  S  G  R  D  C  S  R  V  L  G  S  T  K  S  F  G  C  S  S  D  Q  V  T  A  R  S  A  R  Q  L  G  G  *  S  T  H  C  L  V  I  C  G  S  *  N  S  *  F  G  F  I  I  I  L  V  S  Q  F  A  L  P  G  P  C  S  T  P  I  S  S  S  S  L  F  C  C  A  Y  E  S  L  *  H  N  R  G  I  L  *  D  I  C  L  V  F  S  G  L  H  S  V  L  W  L  I  S  Q  I  I  D  L  S  L  F  S  G  F  R  C  L  F  S  H  H  F  V  V  Y  R  L  L  *  R  R  H  R  L  N  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39929" stop="40153"/>
                    <exon start="41113" stop="41559"/>
                    <exon start="42159" stop="42239"/>
                    <exon start="43499" stop="43695"/>
                    <exon start="43781" stop="43880"/>
                    <exon start="44596" stop="44781"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1233</number_coding_nucleotides>
                  <number_encoded_amino_acids>411</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLELLVSFFIVFIKREIFSNTESAMAALQYLESLRNDHPELSDWYTTLADLYQRKLWHQLSLKLEQFVALAVFQAGDTLIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKDAGIGYLEGVAEKLQNTKETRIEEPILYIKLQIALFKLEQGDQKECKRLLEQGNATIDSMTDVDPSVYASYYWVSSQYHKTRQEFAEFYKSALLYLAYVSVDSLSESFKLDLAFDLSLSALLGDNVYNFGELLAHPIIKSLVGTQVEWLYHILEAFNTGDLVRYQELCRVHKAALSAQPALLQNEKKLLEKINILCLMEIIFSRPAEDRTIPLSAIAERTKLSVEDVEYLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGVPQIKSLRDRLDNWVDKVHTALLSVEAETPDLVSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="50995" PGL_stop="47319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50995" e_stop="50591"/>
            <exon e_start="50482" e_stop="50432"/>
            <exon e_start="50322" e_stop="50206"/>
            <exon e_start="48752" e_stop="48672"/>
            <exon e_start="48596" e_stop="48498"/>
            <exon e_start="47731" e_stop="47319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.928"/>
          <exon-intron don_prob="0.333" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="50995" e_stop="50591" e_length="405"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50590" i_stop="50483" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50482" e_stop="50432" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.333" acc_prob="0.899">
            <gDNA_intron_boundary i_start="50431" i_stop="50323" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50322" e_stop="50206" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.832">
            <gDNA_intron_boundary i_start="50205" i_stop="48753" i_length="1453"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48752" e_stop="48672" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.892" acc_prob="0.933">
            <gDNA_intron_boundary i_start="48671" i_stop="48597" i_length="75"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48596" e_stop="48498" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766"/>
          </intron>
          <exon e_serial="6" e_score="0.935">
            <gDNA_exon_boundary e_start="47731" e_stop="47319" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50591"/>
              <exon start="50482" stop="50432"/>
              <exon start="50322" stop="50206"/>
              <exon start="48752" stop="48672"/>
              <exon start="48596" stop="48504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50591"/>
              <exon start="50482" stop="50432"/>
              <exon start="50322" stop="50222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50855" stop="50591"/>
              <exon start="50482" stop="50432"/>
              <exon start="50322" stop="50206"/>
              <exon start="48752" stop="48672"/>
              <exon start="48596" stop="48498"/>
              <exon start="47731" stop="47512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50854" stop="50591"/>
              <exon start="50482" stop="50432"/>
              <exon start="50322" stop="50206"/>
              <exon start="48752" stop="48672"/>
              <exon start="48596" stop="48498"/>
              <exon start="47731" stop="47608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50838" stop="50591"/>
              <exon start="50482" stop="50432"/>
              <exon start="50322" stop="50206"/>
              <exon start="48752" stop="48672"/>
              <exon start="48596" stop="48498"/>
              <exon start="47731" stop="47508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50638" stop="50591"/>
              <exon start="50482" stop="50432"/>
              <exon start="50322" stop="50206"/>
              <exon start="48752" stop="48708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50471" stop="50432"/>
              <exon start="50322" stop="50206"/>
              <exon start="48752" stop="48672"/>
              <exon start="48596" stop="48498"/>
              <exon start="47731" stop="47319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426543" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACTTGAAAGCAACCTGCAATTAGTTGACCATATGATATCTTTCTTCGATTACCTACCGTACATGCTTGTGAATAAGCATCAGATTCTGTCAAATTTGCCGAAAGTGCTTCAAAAATGGACCCTTTCTGTATAGTCCCCACAATTTGGCCCTTTTGACCTCTCATACAAACAATATTGTTAAAAGAATAGGAAAAGAAAGCAACCCCTTTTAATGATTTGTTTCCATTTTCAAGAATCATTCATAGTTTTTGGTTGAATATTCACAGGTTTCCACTCCTTTTTGTCACTTTCATTACCAAAGATTTCACCTTTTTAAAGATATCTAAAGCCAAACAGGAGGAGGAGGTGGAGAGTTTTGAGCTATTTGTATAGTTCTAAAGCATATTCTAAGTTAGGACTCAG : GAAAAGAGATAGCTGGTTGACTCTTGATAGCTTCTGCAAGTTAAAAGACAA : TGTATCCAAGGGTTAAGGTGAGGGTACAGAAAGAAGAAGATGATCAGTATGCTTATCAGTCTTTGCCATCTTTGAAGGCTTTTGAATCCCTTTCCATAAGTGACTTCTCTTCTTCAG : ATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAG : GGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG : TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATCCTCGAGCAAGAGCAAGGCTAGTGAAAGGTGATCCAAGTCGAAGAACACACCTTCAAGAAGACGATCAACATCCTGTTCGTTCAAAAGTAAAACAGTAAGCAGGGGTATGTAGTCAACTCATACTAGCCTGCATATTATAGTAATTCGAAAAGTTTGTGAGGTGATGCTACTCTACTTGACCAAAGTTATAACTTAACTTGAAACTCTTTAAACAGAAACCTTATTAA</gDNA_template>
            <first_frame> E  T  *  K  Q  P  A  I  S  *  P  Y  D  I  F  L  R  L  P  T  V  H  A  C  E  *  A  S  D  S  V  K  F  A  E  S  A  S  K  M  D  P  F  C  I  V  P  T  I  W  P  F  *  P  L  I  Q  T  I  L  L  K  E  *  E  K  K  A  T  P  F  N  D  L  F  P  F  S  R  I  I  H  S  F  W  L  N  I  H  R  F  P  L  L  F  V  T  F  I  T  K  D  F  T  F  L  K  I  S  K  A  K  Q  E  E  E  V  E  S  F  E  L  F  V  *  F  *  S  I  F  *  V  R  T  Q  :  E  K  R  *  L  V  D  S  *  *  L  L  Q  V  K  R  Q  :  C  I  Q  G  L  R  *  G  Y  R  K  K  K  M  I  S  M  L  I  S  L  C  H  L  *  R  L  L  N  P  F  P  *  V  T  S  L  L  Q  :  M  I  R  L  H  Q  L  *  G  Y  P  E  H  V  F  *  A  Q  T  D  M  D  F  H  H  *  E  :  G  E  *  R  K  I  T  K  A  F  L  V  E  A  N  Q  I  Q  G  P  L  L  S  L  D  H  V  Q  S  Y  Q  A  L  :  L  M  I  K  *  *  A  R  G  A  R  R  K  Q  K  Q  F  Q  T  *  R  I  T  I  H  V  K  T  D  I  T  S  S  A  K  L  F  Q  N  Q  F  K  I  H  I  I  Q  V  E  I  S  A  Q  K  R  P  I  M  G  N  L  I  L  E  Q  E  Q  G  *  *  K  V  I  Q  V  E  E  H  T  F  K  K  T  I  N  I  L  F  V  Q  K  *  N  S  K  Q  G  Y  V  V  N  S  Y  *  P  A  Y  Y  S  N  S  K  S  L  *  G  D  A  T  L  L  D  Q  S  Y  N  L  T  *  N  S  L  N  R  N  L  I   </first_frame>
            <second_frame>  K  L  E  S  N  L  Q  L  V  D  H  M  I  S  F  F  D  Y  L  P  Y  M  L  V  N  K  H  Q  I  L  S  N  L  P  K  V  L  Q  K  W  T  L  S  V  *  S  P  Q  F  G  P  F  D  L  S  Y  K  Q  Y  C  *  K  N  R  K  R  K  Q  P  L  L  M  I  C  F  H  F  Q  E  S  F  I  V  F  G  *  I  F  T  G  F  H  S  F  L  S  L  S  L  P  K  I  S  P  F  *  R  Y  L  K  P  N  R  R  R  R  W  R  V  L  S  Y  L  Y  S  S  K  A  Y  S  K  L  G  L  R :   K  R  D  S  W  L  T  L  D  S  F  C  K  L  K  D  N :   V  S  K  G  *  G  E  G  T  E  R  R  R  *  S  V  C  L  S  V  F  A  I  F  E  G  F  *  I  P  F  H  K  *  L  L  F  F  R :   *  F  A  Y  I  S  C  E  D  T  P  S  M  Y  F  K  P  R  Q  T  W  T  S  I  I  E  R :   E  N  E  G  K  *  P  K  H  F  W  W  K  Q  T  K  Y  K  G  H  F  C  P  S  T  T  C  S  L  I  K  P  C :   *  *  S  N  D  K  H  E  E  Q  D  E  S  R  S  S  F  R  L  E  E  S  Q  Y  M  S  K  Q  T  S  H  Q  V  Q  N  F  S  K  I  N  S  R  F  T  S  Y  K  W  K  *  V  L  K  R  D  R  *  W  E  T  *  S  S  S  K  S  K  A  S  E  R  *  S  K  S  K  N  T  P  S  R  R  R  S  T  S  C  S  F  K  S  K  T  V  S  R  G  M  *  S  T  H  T  S  L  H  I  I  V  I  R  K  V  C  E  V  M  L  L  Y  L  T  K  V  I  T  *  L  E  T  L  *  T  E  T  L  L  </second_frame>
            <third_frame>   N  L  K  A  T  C  N  *  L  T  I  *  Y  L  S  S  I  T  Y  R  T  C  L  *  I  S  I  R  F  C  Q  I  C  R  K  C  F  K  N  G  P  F  L  Y  S  P  H  N  L  A  L  L  T  S  H  T  N  N  I  V  K  R  I  G  K  E  S  N  P  F  *  *  F  V  S  I  F  K  N  H  S  *  F  L  V  E  Y  S  Q  V  S  T  P  F  C  H  F  H  Y  Q  R  F  H  L  F  K  D  I  *  S  Q  T  G  G  G  G  G  E  F  *  A  I  C  I  V  L  K  H  I  L  S  *  D  S   : G  K  E  I  A  G  *  L  L  I  A  S  A  S  *  K  T   : M  Y  P  R  V  K  V  R  V  Q  K  E  E  D  D  Q  Y  A  Y  Q  S  L  P  S  L  K  A  F  E  S  L  S  I  S  D  F  S  S  S   : D  D  S  P  T  S  V  V  R  I  P  R  A  C  I  L  S  P  D  R  H  G  L  P  S  L  R   : G  R  M  K  E  N  N  Q  S  I  F  G  G  S  K  P  N  T  R  A  T  S  V  P  R  P  R  A  V  L  S  S  P   : V  N  D  Q  M  I  S  T  R  S  K  T  K  A  E  A  V  S  D  L  K  N  H  N  T  C  Q  N  R  H  H  I  K  C  K  T  F  P  K  S  I  Q  D  S  H  H  T  S  G  N  K  C  S  K  E  T  D  N  G  K  L  D  P  R  A  R  A  R  L  V  K  G  D  P  S  R  R  T  H  L  Q  E  D  D  Q  H  P  V  R  S  K  V  K  Q  *  A  G  V  C  S  Q  L  I  L  A  C  I  L  *  *  F  E  K  F  V  R  *  C  Y  S  T  *  P  K  L  *  L  N  L  K  L  F  K  Q  K  P  Y  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50438" stop="50432"/>
                    <exon start="50322" stop="50206"/>
                    <exon start="48752" stop="48672"/>
                    <exon start="48596" stop="48498"/>
                    <exon start="47731" stop="47448"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>585</number_coding_nucleotides>
                  <number_encoded_amino_acids>195</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTMYPRVKVRVQKEEDDQYAYQSLPSLKAFESLSISDFSSSDDSPTSVVRIPRACILSPDRHGLPSLRGRMKENNQSIFGGSKPNTRATSVPRPRAVLSSPVNDQMISTRSKTKAEAVSDLKNHNTCQNRHHIKCKTFPKSIQDSHHTSGNKCSKETDNGKLDPRARARLVKGDPSRRTHLQEDDQHPVRSKVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="48753" e_stop="48498"/>
            <exon e_start="47731" e_stop="47546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.949"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="48753" e_stop="48498" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48497" i_stop="47732" i_length="766"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="47731" e_stop="47546" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48753" stop="48498"/>
              <exon start="47731" stop="47546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATTCGCCTACATCAGTTGTGAGGATACCCCGAGCATGTATTTTAAGCCCAGACAGACATGGACTTCCATCATTGAGAGGTTACATACTTCTTTAGCAACTTTTGTTACCACACACTTTGCAAGTGGGTTGACATTCACTCGGTTGATTGGCAGGGAGAATGAAGGAAAATAACCAAAGCATTTTTGGTGGAAGCAAACCAAATACAAGGGCCACTTCTGTCCCTCGACCACGTGCAGTCTTATCAAGCCCTG : TTAATGATCAAATGATAAGCACGAGGAGCAAGACGAAAGCAGAAGCAGTTTCAGACTTGAAGAATCACAATACATGTCAAAACAGACATCACATCAAGTGCAAAACTTTTCCAAAATCAATTCAAGATTCACATCATACAAGTGGAAATAAGTGCTCAAAAGAGACCGATAATGGGAAACTTGATC</gDNA_template>
            <first_frame> D  D  S  P  T  S  V  V  R  I  P  R  A  C  I  L  S  P  D  R  H  G  L  P  S  L  R  G  Y  I  L  L  *  Q  L  L  L  P  H  T  L  Q  V  G  *  H  S  L  G  *  L  A  G  R  M  K  E  N  N  Q  S  I  F  G  G  S  K  P  N  T  R  A  T  S  V  P  R  P  R  A  V  L  S  S  P   : V  N  D  Q  M  I  S  T  R  S  K  T  K  A  E  A  V  S  D  L  K  N  H  N  T  C  Q  N  R  H  H  I  K  C  K  T  F  P  K  S  I  Q  D  S  H  H  T  S  G  N  K  C  S  K  E  T  D  N  G  K  L  D  </first_frame>
            <second_frame>  M  I  R  L  H  Q  L  *  G  Y  P  E  H  V  F  *  A  Q  T  D  M  D  F  H  H  *  E  V  T  Y  F  F  S  N  F  C  Y  H  T  L  C  K  W  V  D  I  H  S  V  D  W  Q  G  E  *  R  K  I  T  K  A  F  L  V  E  A  N  Q  I  Q  G  P  L  L  S  L  D  H  V  Q  S  Y  Q  A  L  :  L  M  I  K  *  *  A  R  G  A  R  R  K  Q  K  Q  F  Q  T  *  R  I  T  I  H  V  K  T  D  I  T  S  S  A  K  L  F  Q  N  Q  F  K  I  H  I  I  Q  V  E  I  S  A  Q  K  R  P  I  M  G  N  L  I </second_frame>
            <third_frame>   *  F  A  Y  I  S  C  E  D  T  P  S  M  Y  F  K  P  R  Q  T  W  T  S  I  I  E  R  L  H  T  S  L  A  T  F  V  T  T  H  F  A  S  G  L  T  F  T  R  L  I  G  R  E  N  E  G  K  *  P  K  H  F  W  W  K  Q  T  K  Y  K  G  H  F  C  P  S  T  T  C  S  L  I  K  P  C :   *  *  S  N  D  K  H  E  E  Q  D  E  S  R  S  S  F  R  L  E  E  S  Q  Y  M  S  K  Q  T  S  H  Q  V  Q  N  F  S  K  I  N  S  R  F  T  S  Y  K  W  K  *  V  L  K  R  D  R  *  W  E  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48603" stop="48498"/>
                    <exon start="47731" stop="47547"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAGRMKENNQSIFGGSKPNTRATSVPRPRAVLSSPVNDQMISTRSKTKAEAVSDLKNHNTCQNRHHIKCKTFPKSIQDSHHTSGNKCSKETDNGKLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52125" PGL_stop="54748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52125" e_stop="52239"/>
            <exon e_start="53004" e_stop="54748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.920" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="52125" e_stop="52239" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53004" e_stop="54748" e_length="1745"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52125" stop="52239"/>
              <exon start="53004" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52176" stop="52239"/>
              <exon start="53004" stop="53561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52176" stop="52239"/>
              <exon start="53004" stop="53506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52177" stop="52239"/>
              <exon start="53004" stop="53681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52178" stop="52239"/>
              <exon start="53004" stop="53420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52203" stop="52239"/>
              <exon start="53004" stop="53521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52211" stop="52239"/>
              <exon start="53004" stop="53595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52212" stop="52239"/>
              <exon start="53004" stop="53361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="53280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53053" stop="53671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53076" stop="53674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53119" stop="53754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53191" stop="53803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53322" stop="54035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53355" stop="54097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53367" stop="53885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53419" stop="54232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53445" stop="53998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53598" stop="54425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53662" stop="54417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53689" stop="54222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53691" stop="54306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53705" stop="54296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53738" stop="54576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53815" stop="54431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53867" stop="54483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53973" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54048" stop="54748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414770" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54054" stop="54723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54057" stop="54678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54230" stop="54710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54234" stop="54723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54250" stop="54715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54260" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54269" stop="54715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54298" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATATATAGTTTGCGTTGACTACTATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</gDNA_template>
            <first_frame> *  Y  I  V  C  V  D  Y  Y  *  G  S  R  *  H  L  L  S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : V  Y  S  F  G  C  L  K  L  E  F  G  C  S  D  A  N  D  S  C  A  Y  Q  N  G  S  F  C  L  C  D  V  I  S  F  L  N  F  R  S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q  G  W  E  K  I  D  G  R  C  C  C  H  R  *  K  G  V  S  *  A  R  R  *  C  T  L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E  H  I  L  V  S  L  L  A  L  I  F  S </first_frame>
            <second_frame>  N  I  *  F  A  L  T  T  I  E  V  V  G  S  I  Y  Y  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  F  I  H  L  D  A  *  S  W  N  S  G  A  L  M  Q  M  I  R  V  R  T  R  M  A  L  S  A  C  A  M  L  Y  R  S  S  I  S  G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  V  G  K  K  L  M  E  G  A  A  A  T  V  K  K  V  S  L  E  L  G  G  N  A  P  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M  N  T  F  *  C  L  Y  W  L  S  S  F   </second_frame>
            <third_frame>   I  Y  S  L  R  *  L  L  L  R  *  *  V  A  S  I  I  F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  S :   L  F  I  W  M  L  E  V  G  I  R  V  L  *  C  K  *  F  V  C  V  P  E  W  L  F  L  L  V  R  C  Y  I  V  P  Q  F  Q  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  R  L  G  K  N  *  W  K  V  L  L  P  P  L  K  R  C  L  L  S  *  A  V  M  H  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  T  H  F  S  V  F  I  G  S  H  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53025" stop="54614"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWNSGALMQMIRVRTRMALSACAMLYRSSISGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKVGKKLMEGAAATVKKVSLELGGNAPCIIFDDADLEVALKGALATKFRNTGQTCVCANRILVQEGIYDKFANAFAKAVQNMKVGDGFTEGVEQGPLINEAAVQKVEYFVDEATSKGAKVLVGGKRHSLGMTFYEPTVVTGVNSEMLLAKEEVFGPVAPLLKFKTDEEAIQMANDTNAGLAAYIFSTNIKRAWRVTEALEYGIVGVNEGLVSTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCLGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52149" e_stop="52239"/>
            <exon e_start="53119" e_stop="54748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52149" e_stop="52239" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="52240" i_stop="53118" i_length="879"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="53119" e_stop="54748" e_length="1630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52149" stop="52239"/>
              <exon start="53119" stop="53556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52172" stop="52239"/>
              <exon start="53119" stop="53948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52174" stop="52239"/>
              <exon start="53119" stop="53755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52178" stop="52239"/>
              <exon start="53119" stop="53495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52203" stop="52239"/>
              <exon start="53119" stop="53862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52203" stop="52239"/>
              <exon start="53119" stop="53834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52203" stop="52239"/>
              <exon start="53119" stop="53755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52203" stop="52239"/>
              <exon start="53119" stop="53592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53119" stop="53754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53191" stop="53803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53322" stop="54035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53355" stop="54097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53367" stop="53885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53419" stop="54232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53445" stop="53998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53598" stop="54425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53662" stop="54417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53689" stop="54222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53691" stop="54306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53705" stop="54296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53738" stop="54576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53815" stop="54431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53867" stop="54483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53973" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54048" stop="54748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414770" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54054" stop="54723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54057" stop="54678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54230" stop="54710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54234" stop="54723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54250" stop="54715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54260" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54269" stop="54715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54298" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGAGGTAGTAGGTAGCATCTATTATCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : GTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAGGTTGGGAAAAAATTGATGGAAGGTGCTGCTGCCACCGTTAAAAAGGTGTCTCTTGAGCTAGGCGGTAATGCACCTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</gDNA_template>
            <first_frame> Y  *  G  S  R  *  H  L  L  S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  V  G  K  K  L  M  E  G  A  A  A  T  V  K  K  V  S  L  E  L  G  G  N  A  P  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M  N  T  F  *  C  L  Y  W  L  S  S  F   </first_frame>
            <second_frame>  I  E  V  V  G  S  I  Y  Y  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  R  L  G  K  N  *  W  K  V  L  L  P  P  L  K  R  C  L  L  S  *  A  V  M  H  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  T  H  F  S  V  F  I  G  S  H  L  F  </second_frame>
            <third_frame>   L  R  *  *  V  A  S  I  I  F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  R :   S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q  G  W  E  K  I  D  G  R  C  C  C  H  R  *  K  G  V  S  *  A  R  R  *  C  T  L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E  H  I  L  V  S  L  L  A  L  I  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52215" stop="52239"/>
                    <exon start="53119" stop="54614"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1518</number_coding_nucleotides>
                  <number_encoded_amino_acids>506</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISQFSDGKGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKVGKKLMEGAAATVKKVSLELGGNAPCIIFDDADLEVALKGALATKFRNTGQTCVCANRILVQEGIYDKFANAFAKAVQNMKVGDGFTEGVEQGPLINEAAVQKVEYFVDEATSKGAKVLVGGKRHSLGMTFYEPTVVTGVNSEMLLAKEEVFGPVAPLLKFKTDEEAIQMANDTNAGLAAYIFSTNIKRAWRVTEALEYGIVGVNEGLVSTEVAPFGGVKQSGLGREGSKYGMDEYLEMKYVCLGSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52176" e_stop="52239"/>
            <exon e_start="53004" e_stop="53867"/>
            <exon e_start="53941" e_stop="54748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52176" e_stop="52239" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.920">
            <gDNA_intron_boundary i_start="52240" i_stop="53003" i_length="764"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="53004" e_stop="53867" e_length="864"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53868" i_stop="53940" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="53941" e_stop="54748" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52176" stop="52239"/>
              <exon start="53004" stop="53561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52176" stop="52239"/>
              <exon start="53004" stop="53506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52177" stop="52239"/>
              <exon start="53004" stop="53681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52178" stop="52239"/>
              <exon start="53004" stop="53420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52203" stop="52239"/>
              <exon start="53004" stop="53521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52211" stop="52239"/>
              <exon start="53004" stop="53595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52212" stop="52239"/>
              <exon start="53004" stop="53361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53004" stop="53245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53042" stop="53280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53053" stop="53671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53076" stop="53674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53119" stop="53754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53191" stop="53803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53537" stop="53867"/>
              <exon start="53941" stop="54470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53973" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54048" stop="54748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414770" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54054" stop="54723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555773" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54057" stop="54678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54230" stop="54710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54234" stop="54723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266340" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54250" stop="54715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54260" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54269" stop="54715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54298" stop="54712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTAGGGTTCCATCGCTCACGCACACTCTCCGGTAGATCTCCCAATTCTCCGACGGAAAAG : TTTATTCATTTGGATGCTTGAAGTTGGAATTCGGGTGCTCTGATGCAAATGATTCGTGTGCGTACCAGAATGGCTCTTTCTGCTTGTGCGATGTTATATCGTTCCTCAATTTCAGGTCCAGTGCGACTGATGACGACAGACACACAAAGTGTTGCTGCTAAGCTGAGCAGCTCTGGATTGTTGCGGAGTCAGGCTCTTATTGGAGGGAAATGGGTTGATGCATATGATGGGAAGACTATAAAGGTCCACAATCCTGCAACAGGGGAGGTAATAACAGATGTGCCATGCATGGGAGGGAGGGAGACGAACGATGCAATTTCTTCTGCCTATGATGCATTTAGTTCATGGAGCAAACTTACTGCCGCTGAAAGGAGCAGATATTTAAGGAAGTGGTACGATTTGATAATGGCCCATAAAGAAGAACTTGGACAGCTTATGACACTAGAGCAAGGGAAACCTCTAAAAGAGGCTATTGGTGAAGTTAGTTATGGGGCTGGTTTTATTGAGTTCTCCGCTGAGGAGGGTAAACGTATATATGGTGACATCATTCCATCACCATTAGCAGATAGGCGGTTATTTGTTTTAAAGCAACCAGTTGGTGTTGTTGGTGCAATTACCCCATGGAATTTTCCCTTGGCTATGATTACCCGAAAGGTTGGCCCTGCTCTTGCTTGTGGTTGCACAGTGGTGATTAAACCGTCTGAACTCACACCCTTGACTGCTTTAGCAGCAGCTGAACTCTCCATTCAAGCTGGAATACCACCGGGCGTAGTGAATGTTGTTATGGGAAATGCACCTGATATTGGAGACGCACTGCTTGCAAGCCCACAGGTAAGAAAAATTACATTCACAGGTTCAACCAAG : CTTGCATCATCTTTGATGACGCAGATCTTGAAGTAGCTTTAAAAGGAGCTCTCGCAACAAAGTTCCGTAACACCGGACAAACATGTGTATGTGCGAACAGAATACTTGTGCAAGAAGGGATATATGATAAATTCGCAAATGCTTTTGCTAAAGCTGTCCAAAACATGAAAGTTGGAGATGGTTTCACTGAAGGTGTAGAGCAAGGCCCTCTAATCAATGAAGCAGCAGTACAGAAGGTTGAATATTTTGTGGATGAAGCTACTTCAAAGGGAGCCAAAGTCCTTGTTGGTGGGAAGAGACACAGCCTTGGCATGACTTTCTACGAGCCTACAGTTGTTACTGGAGTTAACAGTGAGATGCTCTTGGCGAAAGAGGAAGTATTTGGGCCAGTCGCCCCTCTTTTGAAGTTCAAAACAGACGAAGAAGCAATCCAAATGGCTAACGACACTAATGCTGGTTTAGCTGCTTATATATTCTCAACAAACATCAAAAGAGCTTGGCGTGTTACTGAAGCTCTCGAATATGGAATTGTCGGAGTTAATGAAGGACTAGTTTCAACCGAGGTAGCTCCATTTGGGGGTGTGAAACAATCAGGTCTTGGCCGCGAAGGTTCTAAATACGGGATGGATGAATATTTAGAGATGAAATATGTGTGCTTGGGAAGTATGAGCTAAATCACCACTGTAAAAAAAAAATTTCTCAATAATAAGAGACACAATGGTGCCAGTCTCATTTTGGGTTTAATGAAGTTTTTCACGTCTTTATGAATGAACACATTTTAGTGTCTTTATTGGCTCTCATCTTTTCA</gDNA_template>
            <first_frame> S  F  R  V  P  S  L  T  H  T  L  R  *  I  S  Q  F  S  D  G  K   : V  Y  S  F  G  C  L  K  L  E  F  G  C  S  D  A  N  D  S  C  A  Y  Q  N  G  S  F  C  L  C  D  V  I  S  F  L  N  F  R  S  S  A  T  D  D  D  R  H  T  K  C  C  C  *  A  E  Q  L  W  I  V  A  E  S  G  S  Y  W  R  E  M  G  *  C  I  *  W  E  D  Y  K  G  P  Q  S  C  N  R  G  G  N  N  R  C  A  M  H  G  R  E  G  D  E  R  C  N  F  F  C  L  *  C  I  *  F  M  E  Q  T  Y  C  R  *  K  E  Q  I  F  K  E  V  V  R  F  D  N  G  P  *  R  R  T  W  T  A  Y  D  T  R  A  R  E  T  S  K  R  G  Y  W  *  S  *  L  W  G  W  F  Y  *  V  L  R  *  G  G  *  T  Y  I  W  *  H  H  S  I  T  I  S  R  *  A  V  I  C  F  K  A  T  S  W  C  C  W  C  N  Y  P  M  E  F  S  L  G  Y  D  Y  P  K  G  W  P  C  S  C  L  W  L  H  S  G  D  *  T  V  *  T  H  T  L  D  C  F  S  S  S  *  T  L  H  S  S  W  N  T  T  G  R  S  E  C  C  Y  G  K  C  T  *  Y  W  R  R  T  A  C  K  P  T  G  K  K  N  Y  I  H  R  F  N  Q   : A  C  I  I  F  D  D  A  D  L  E  V  A  L  K  G  A  L  A  T  K  F  R  N  T  G  Q  T  C  V  C  A  N  R  I  L  V  Q  E  G  I  Y  D  K  F  A  N  A  F  A  K  A  V  Q  N  M  K  V  G  D  G  F  T  E  G  V  E  Q  G  P  L  I  N  E  A  A  V  Q  K  V  E  Y  F  V  D  E  A  T  S  K  G  A  K  V  L  V  G  G  K  R  H  S  L  G  M  T  F  Y  E  P  T  V  V  T  G  V  N  S  E  M  L  L  A  K  E  E  V  F  G  P  V  A  P  L  L  K  F  K  T  D  E  E  A  I  Q  M  A  N  D  T  N  A  G  L  A  A  Y  I  F  S  T  N  I  K  R  A  W  R  V  T  E  A  L  E  Y  G  I  V  G  V  N  E  G  L  V  S  T  E  V  A  P  F  G  G  V  K  Q  S  G  L  G  R  E  G  S  K  Y  G  M  D  E  Y  L  E  M  K  Y  V  C  L  G  S  M  S  *  I  T  T  V  K  K  K  F  L  N  N  K  R  H  N  G  A  S  L  I  L  G  L  M  K  F  F  T  S  L  *  M  N  T  F  *  C  L  Y  W  L  S  S  F   </first_frame>
            <second_frame>  L  L  G  F  H  R  S  R  T  L  S  G  R  S  P  N  S  P  T  E  K  :  F  I  H  L  D  A  *  S  W  N  S  G  A  L  M  Q  M  I  R  V  R  T  R  M  A  L  S  A  C  A  M  L  Y  R  S  S  I  S  G  P  V  R  L  M  T  T  D  T  Q  S  V  A  A  K  L  S  S  S  G  L  L  R  S  Q  A  L  I  G  G  K  W  V  D  A  Y  D  G  K  T  I  K  V  H  N  P  A  T  G  E  V  I  T  D  V  P  C  M  G  G  R  E  T  N  D  A  I  S  S  A  Y  D  A  F  S  S  W  S  K  L  T  A  A  E  R  S  R  Y  L  R  K  W  Y  D  L  I  M  A  H  K  E  E  L  G  Q  L  M  T  L  E  Q  G  K  P  L  K  E  A  I  G  E  V  S  Y  G  A  G  F  I  E  F  S  A  E  E  G  K  R  I  Y  G  D  I  I  P  S  P  L  A  D  R  R  L  F  V  L  K  Q  P  V  G  V  V  G  A  I  T  P  W  N  F  P  L  A  M  I  T  R  K  V  G  P  A  L  A  C  G  C  T  V  V  I  K  P  S  E  L  T  P  L  T  A  L  A  A  A  E  L  S  I  Q  A  G  I  P  P  G  V  V  N  V  V  M  G  N  A  P  D  I  G  D  A  L  L  A  S  P  Q  V  R  K  I  T  F  T  G  S  T  K  :  L  A  S  S  L  M  T  Q  I  L  K  *  L  *  K  E  L  S  Q  Q  S  S  V  T  P  D  K  H  V  Y  V  R  T  E  Y  L  C  K  K  G  Y  M  I  N  S  Q  M  L  L  L  K  L  S  K  T  *  K  L  E  M  V  S  L  K  V  *  S  K  A  L  *  S  M  K  Q  Q  Y  R  R  L  N  I  L  W  M  K  L  L  Q  R  E  P  K  S  L  L  V  G  R  D  T  A  L  A  *  L  S  T  S  L  Q  L  L  L  E  L  T  V  R  C  S  W  R  K  R  K  Y  L  G  Q  S  P  L  F  *  S  S  K  Q  T  K  K  Q  S  K  W  L  T  T  L  M  L  V  *  L  L  I  Y  S  Q  Q  T  S  K  E  L  G  V  L  L  K  L  S  N  M  E  L  S  E  L  M  K  D  *  F  Q  P  R  *  L  H  L  G  V  *  N  N  Q  V  L  A  A  K  V  L  N  T  G  W  M  N  I  *  R  *  N  M  C  A  W  E  V  *  A  K  S  P  L  *  K  K  N  F  S  I  I  R  D  T  M  V  P  V  S  F  W  V  *  *  S  F  S  R  L  Y  E  *  T  H  F  S  V  F  I  G  S  H  L  F  </second_frame>
            <third_frame>   F  *  G  S  I  A  H  A  H  S  P  V  D  L  P  I  L  R  R  K  S :   L  F  I  W  M  L  E  V  G  I  R  V  L  *  C  K  *  F  V  C  V  P  E  W  L  F  L  L  V  R  C  Y  I  V  P  Q  F  Q  V  Q  C  D  *  *  R  Q  T  H  K  V  L  L  L  S  *  A  A  L  D  C  C  G  V  R  L  L  L  E  G  N  G  L  M  H  M  M  G  R  L  *  R  S  T  I  L  Q  Q  G  R  *  *  Q  M  C  H  A  W  E  G  G  R  R  T  M  Q  F  L  L  P  M  M  H  L  V  H  G  A  N  L  L  P  L  K  G  A  D  I  *  G  S  G  T  I  *  *  W  P  I  K  K  N  L  D  S  L  *  H  *  S  K  G  N  L  *  K  R  L  L  V  K  L  V  M  G  L  V  L  L  S  S  P  L  R  R  V  N  V  Y  M  V  T  S  F  H  H  H  *  Q  I  G  G  Y  L  F  *  S  N  Q  L  V  L  L  V  Q  L  P  H  G  I  F  P  W  L  *  L  P  E  R  L  A  L  L  L  L  V  V  A  Q  W  *  L  N  R  L  N  S  H  P  *  L  L  *  Q  Q  L  N  S  P  F  K  L  E  Y  H  R  A  *  *  M  L  L  W  E  M  H  L  I  L  E  T  H  C  L  Q  A  H  R  *  E  K  L  H  S  Q  V  Q  P  S :   L  H  H  L  *  *  R  R  S  *  S  S  F  K  R  S  S  R  N  K  V  P  *  H  R  T  N  M  C  M  C  E  Q  N  T  C  A  R  R  D  I  *  *  I  R  K  C  F  C  *  S  C  P  K  H  E  S  W  R  W  F  H  *  R  C  R  A  R  P  S  N  Q  *  S  S  S  T  E  G  *  I  F  C  G  *  S  Y  F  K  G  S  Q  S  P  C  W  W  E  E  T  Q  P  W  H  D  F  L  R  A  Y  S  C  Y  W  S  *  Q  *  D  A  L  G  E  R  G  S  I  W  A  S  R  P  S  F  E  V  Q  N  R  R  R  S  N  P  N  G  *  R  H  *  C  W  F  S  C  L  Y  I  L  N  K  H  Q  K  S  L  A  C  Y  *  S  S  R  I  W  N  C  R  S  *  *  R  T  S  F  N  R  G  S  S  I  W  G  C  E  T  I  R  S  W  P  R  R  F  *  I  R  D  G  *  I  F  R  D  E  I  C  V  L  G  K  Y  E  L  N  H  H  C  K  K  K  I  S  Q  *  *  E  T  Q  W  C  Q  S  H  F  G  F  N  E  V  F  H  V  F  M  N  E  H  I  L  V  S  L  L  A  L  I  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53025" stop="53867"/>
                    <exon start="53941" stop="53976"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWNSGALMQMIRVRTRMALSACAMLYRSSISGPVRLMTTDTQSVAAKLSSSGLLRSQALIGGKWVDAYDGKTIKVHNPATGEVITDVPCMGGRETNDAISSAYDAFSSWSKLTAAERSRYLRKWYDLIMAHKEELGQLMTLEQGKPLKEAIGEVSYGAGFIEFSAEEGKRIYGDIIPSPLADRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPPGVVNVVMGNAPDIGDALLASPQVRKITFTGSTKLASSLMTQILK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="53981" PGL_stop="53121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53981" e_stop="53621"/>
            <exon e_start="53344" e_stop="53121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.729" acc_prob="0.000" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="53981" e_stop="53621" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.729" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53620" i_stop="53345" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53344" e_stop="53121" e_length="224"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53981" stop="53621"/>
              <exon start="53344" stop="53122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53923" stop="53621"/>
              <exon start="53344" stop="53121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542576" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53845" stop="53621"/>
              <exon start="53344" stop="53121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542569" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGCTACTTCAAGATCTGCGTCATCAAAGATGATGCAAGGTGCATTACCGCCTAGCTCAAGAGACACCTTTTTAACGGTGGCAGCAGCACCTTCCATCAATTTTTTCCCAACCTTGGTTGAACCTGTGAATGTAATTTTTCTTACCTGTGGGCTTGCAAGCAGTGCGTCTCCAATATCAGGTGCATTTCCCATAACAACATTCACTACGCCCGGTGGTATTCCAGCTTGAATGGAGAGTTCAGCTGCTGCTAAAGCAGTCAAGGGTGTGAGTTCAGACGGTTTAATCACCACTGTGCAACCACAAGCAAGAGCAGGGCCAACCTTTCGGGTAATCATAGCCAAGGGAAAATTCCATGGG : CTAAATGCATCATAGGCAGAAGAAATTGCATCGTTCGTCTCCCTCCCTCCCATGCATGGCACATCTGTTATTACCTCCCCTGTTGCAGGATTGTGGACCTTTATAGTCTTCCCATCATATGCATCAACCCATTTCCCTCCAATAAGAGCCTGACTCCGCAACAATCCAGAGCTGCTCAGCTTAGCAGCAACACTTTGTGTGTCTGTCGTCATCAGTCGCACTGG</gDNA_template>
            <first_frame> *  S  Y  F  K  I  C  V  I  K  D  D  A  R  C  I  T  A  *  L  K  R  H  L  F  N  G  G  S  S  T  F  H  Q  F  F  P  N  L  G  *  T  C  E  C  N  F  S  Y  L  W  A  C  K  Q  C  V  S  N  I  R  C  I  S  H  N  N  I  H  Y  A  R  W  Y  S  S  L  N  G  E  F  S  C  C  *  S  S  Q  G  C  E  F  R  R  F  N  H  H  C  A  T  T  S  K  S  R  A  N  L  S  G  N  H  S  Q  G  K  I  P  W   : A  K  C  I  I  G  R  R  N  C  I  V  R  L  P  P  S  H  A  W  H  I  C  Y  Y  L  P  C  C  R  I  V  D  L  Y  S  L  P  I  I  C  I  N  P  F  P  S  N  K  S  L  T  P  Q  Q  S  R  A  A  Q  L  S  S  N  T  L  C  V  C  R  H  Q  S  H  W </first_frame>
            <second_frame>  K  A  T  S  R  S  A  S  S  K  M  M  Q  G  A  L  P  P  S  S  R  D  T  F  L  T  V  A  A  A  P  S  I  N  F  F  P  T  L  V  E  P  V  N  V  I  F  L  T  C  G  L  A  S  S  A  S  P  I  S  G  A  F  P  I  T  T  F  T  T  P  G  G  I  P  A  *  M  E  S  S  A  A  A  K  A  V  K  G  V  S  S  D  G  L  I  T  T  V  Q  P  Q  A  R  A  G  P  T  F  R  V  I  I  A  K  G  K  F  H  G  :  L  N  A  S  *  A  E  E  I  A  S  F  V  S  L  P  P  M  H  G  T  S  V  I  T  S  P  V  A  G  L  W  T  F  I  V  F  P  S  Y  A  S  T  H  F  P  P  I  R  A  *  L  R  N  N  P  E  L  L  S  L  A  A  T  L  C  V  S  V  V  I  S  R  T   </second_frame>
            <third_frame>   K  L  L  Q  D  L  R  H  Q  R  *  C  K  V  H  Y  R  L  A  Q  E  T  P  F  *  R  W  Q  Q  H  L  P  S  I  F  S  Q  P  W  L  N  L  *  M  *  F  F  L  P  V  G  L  Q  A  V  R  L  Q  Y  Q  V  H  F  P  *  Q  H  S  L  R  P  V  V  F  Q  L  E  W  R  V  Q  L  L  L  K  Q  S  R  V  *  V  Q  T  V  *  S  P  L  C  N  H  K  Q  E  Q  G  Q  P  F  G  *  S  *  P  R  E  N  S  M  G :   *  M  H  H  R  Q  K  K  L  H  R  S  S  P  S  L  P  C  M  A  H  L  L  L  P  P  L  L  Q  D  C  G  P  L  *  S  S  H  H  M  H  Q  P  I  S  L  Q  *  E  P  D  S  A  T  I  Q  S  C  S  A  *  Q  Q  H  F  V  C  L  S  S  S  V  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53726" stop="53621"/>
                    <exon start="53344" stop="53121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSQGCEFRRFNHHCATTSKSRANLSGNHSQGKIPWAKCIIGRRNCIVRLPPSHAWHICYYLPCCRIVDLYSLPIICINPFPSNKSLTPQQSRAAQLSSNTLCVCRHQSHW</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53980" stop="53750"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KATSRSASSKMMQGALPPSSRDTFLTVAAAPSINFFPTLVEPVNVIFLTCGLASSASPISGAFPITTFTTPGGIPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="54709" PGL_stop="53989"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54709" e_stop="53989"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="54709" e_stop="53989" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54709" stop="53989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54708" stop="54300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATAAAGACGTGAAAAACTTCATTAAACCCAAAATGAGACTGGCACCATTGTGTCTCTTATTATTGAGAAATTTTTTTTTTACAGTGGTGATTTAGCTCATACTTCCCAAGCACACATATTTCATCTCTAAATATTCATCCATCCCGTATTTAGAACCTTCGCGGCCAAGACCTGATTGTTTCACACCCCCAAATGGAGCTACCTCGGTTGAAACTAGTCCTTCATTAACTCCGACAATTCCATATTCGAGAGCTTCAGTAACACGCCAAGCTCTTTTGATGTTTGTTGAGAATATATAAGCAGCTAAACCAGCATTAGTGTCGTTAGCCATTTGGATTGCTTCTTCGTCTGTTTTGAACTTCAAAAGAGGGGCGACTGGCCCAAATACTTCCTCTTTCGCCAAGAGCATCTCACTGTTAACTCCAGTAACAACTGTAGGCTCGTAGAAAGTCATGCCAAGGCTGTGTCTCTTCCCACCAACAAGGACTTTGGCTCCCTTTGAAGTAGCTTCATCCACAAAATATTCAACCTTCTGTACTGCTGCTTCATTGATTAGAGGGCCTTGCTCTACACCTTCAGTGAAACCATCTCCAACTTTCATGTTTTGGACAGCTTTAGCAAAAGCATTTGCGAATTTATCATATATCCCTTCTTGCACAAGTATTCTGTTCGCACATACACATGTTTGTCCGGTGTTACGGAACTTTGTTGCGAGAG</gDNA_template>
            <first_frame> I  H  K  D  V  K  N  F  I  K  P  K  M  R  L  A  P  L  C  L  L  L  L  R  N  F  F  F  T  V  V  I  *  L  I  L  P  K  H  T  Y  F  I  S  K  Y  S  S  I  P  Y  L  E  P  S  R  P  R  P  D  C  F  T  P  P  N  G  A  T  S  V  E  T  S  P  S  L  T  P  T  I  P  Y  S  R  A  S  V  T  R  Q  A  L  L  M  F  V  E  N  I  *  A  A  K  P  A  L  V  S  L  A  I  W  I  A  S  S  S  V  L  N  F  K  R  G  A  T  G  P  N  T  S  S  F  A  K  S  I  S  L  L  T  P  V  T  T  V  G  S  *  K  V  M  P  R  L  C  L  F  P  P  T  R  T  L  A  P  F  E  V  A  S  S  T  K  Y  S  T  F  C  T  A  A  S  L  I  R  G  P  C  S  T  P  S  V  K  P  S  P  T  F  M  F  W  T  A  L  A  K  A  F  A  N  L  S  Y  I  P  S  C  T  S  I  L  F  A  H  T  H  V  C  P  V  L  R  N  F  V  A  R  </first_frame>
            <second_frame>  F  I  K  T  *  K  T  S  L  N  P  K  *  D  W  H  H  C  V  S  Y  Y  *  E  I  F  F  L  Q  W  *  F  S  S  Y  F  P  S  T  H  I  S  S  L  N  I  H  P  S  R  I  *  N  L  R  G  Q  D  L  I  V  S  H  P  Q  M  E  L  P  R  L  K  L  V  L  H  *  L  R  Q  F  H  I  R  E  L  Q  *  H  A  K  L  F  *  C  L  L  R  I  Y  K  Q  L  N  Q  H  *  C  R  *  P  F  G  L  L  L  R  L  F  *  T  S  K  E  G  R  L  A  Q  I  L  P  L  S  P  R  A  S  H  C  *  L  Q  *  Q  L  *  A  R  R  K  S  C  Q  G  C  V  S  S  H  Q  Q  G  L  W  L  P  L  K  *  L  H  P  Q  N  I  Q  P  S  V  L  L  L  H  *  L  E  G  L  A  L  H  L  Q  *  N  H  L  Q  L  S  C  F  G  Q  L  *  Q  K  H  L  R  I  Y  H  I  S  L  L  A  Q  V  F  C  S  H  I  H  M  F  V  R  C  Y  G  T  L  L  R  E </second_frame>
            <third_frame>   S  *  R  R  E  K  L  H  *  T  Q  N  E  T  G  T  I  V  S  L  I  I  E  K  F  F  F  Y  S  G  D  L  A  H  T  S  Q  A  H  I  F  H  L  *  I  F  I  H  P  V  F  R  T  F  A  A  K  T  *  L  F  H  T  P  K  W  S  Y  L  G  *  N  *  S  F  I  N  S  D  N  S  I  F  E  S  F  S  N  T  P  S  S  F  D  V  C  *  E  Y  I  S  S  *  T  S  I  S  V  V  S  H  L  D  C  F  F  V  C  F  E  L  Q  K  R  G  D  W  P  K  Y  F  L  F  R  Q  E  H  L  T  V  N  S  S  N  N  C  R  L  V  E  S  H  A  K  A  V  S  L  P  T  N  K  D  F  G  S  L  *  S  S  F  I  H  K  I  F  N  L  L  Y  C  C  F  I  D  *  R  A  L  L  Y  T  F  S  E  T  I  S  N  F  H  V  L  D  S  F  S  K  S  I  C  E  F  I  I  Y  P  F  L  H  K  Y  S  V  R  T  Y  T  C  L  S  G  V  T  E  L  C  C  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54259" stop="53990"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMPRLCLFPPTRTLAPFEVASSTKYSTFCTAASLIRGPCSTPSVKPSPTFMFWTALAKAFANLSYIPSCTSILFAHTHVCPVLRNFVAR</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54610" stop="54407"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILPKHTYFISKYSSIPYLEPSRPRPDCFTPPNGATSVETSPSLTPTIPYSRASVTRQALLMFVENI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54398" stop="54204"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSISVVSHLDCFFVCFELQKRGDWPKYFLFRQEHLTVNSSNNCRLVESHAKAVSLPTNKDFGSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="55417" PGL_stop="58335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55417" e_stop="55650"/>
            <exon e_start="55746" e_stop="55974"/>
            <exon e_start="56508" e_stop="56660"/>
            <exon e_start="57620" e_stop="58335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.863" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.287" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55417" e_stop="55650" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.863" acc_prob="0.984">
            <gDNA_intron_boundary i_start="55651" i_stop="55745" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55746" e_stop="55974" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.989">
            <gDNA_intron_boundary i_start="55975" i_stop="56507" i_length="533"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56508" e_stop="56660" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.287" acc_prob="0.989">
            <gDNA_intron_boundary i_start="56661" i_stop="57619" i_length="959"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57620" e_stop="58335" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55417" stop="55650"/>
              <exon start="55746" stop="55974"/>
              <exon start="56508" stop="56660"/>
              <exon start="57620" stop="57816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55418" stop="55650"/>
              <exon start="55746" stop="55974"/>
              <exon start="56508" stop="56547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55544" stop="55650"/>
              <exon start="55746" stop="55974"/>
              <exon start="56508" stop="56616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57699" stop="58319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57909" stop="58335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57915" stop="58335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57917" stop="58335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57944" stop="58319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAGAGGGTTTTTGGTGGAAATATGTTGAAGTTGCCTAAACGGAATTTGCCATGGCTGCAGCTGAGACGATTATCAACGGCGATTCGACAAACTGTAGAAGATGAAGGCGACTGGTTTTATTCATCGGAATGGTGGGGCACAACTTCCGGTGGTGGCGACACAGTTTTCCGATCAATTTCCGATAAAGGAAACGGCGTCGTTTCTGTCGTAGCTTACCCTTCTTCCAAACCA : GAAAACTGTTATTGGGGGAAAACAGAGAATTGGCTTCAAAAGAGGTATGAAAAGATGTATCCAAGAGATGAACAGGAAGGGAATTTCAGGATTCTTGGTTACCAATGGCGGAATCTTCACTTTAATGAGGAGACTCGTCAAAGCACAGTTAAAATAATGGCTGCTTATAGGGATTCAGCTCCTGGTTCTATATACTTGATGCAGCAGGCAGAGTGTCTCGCTGTTCCAT : ATGTGAAGAGCATGGTCTCTGCTGGGTTGGCTACCATTGCATCTTGTAGATTCGATCTTGAAAGTGCAGTTTGTGGGAGAAAACCAATGAAAATTTTATGCATTGGGCATGGCGGAGGAAGCATACCGTTGTTTTTGGCTAGTAAAATCCAAG : GTGCTGAAGTGCACATAGCTGAAATCGACCCTGTGGTAATCTCAGCCTCAGTTCAAGCAATGGGGTTCCCATCTTACTCAGTTATGACTCCATCTGGTAGCCGTGCACACTCAACTCCTGATCTTATCCAAGAAGTTCAATGGAAAGGCATTCATGAGAGGATTCAATTACATGAATCAGATGCTGAGAAATTCCTCCTCGAGAACAAAAATCTTTATGATCTTGTTTTCATAGACGCATATGACGGGGAAGATATCTTTCCTCACACCCTATGGGATCCACACTCTCCATTCCTCAATGCTCTCGCAGACCAACTTCACCCTGAGCATGGAACTGTTGTCGTAAACCTTCACTCAGATGTAGACTTCAGGGATGATGATTTCATTCCACCTGGTTCTCACCTTTTGCCAATGGGAAAGTATATTTCGAAAGTGTGCCGATCATATAAAGAAGCTCTATTAGGGAGTAAGAGTTCCTATAATGGTCTGGCTTATGTAGTTTCTGTGCCTTGGGTATGTAATACATCTCTTGTTGTGAGCAGAGGTTTAGAGAAATCTAATAGAGATATGGTTATGAGGAATATCATGTCAAAATCCCTAGTTGTTGAGAATACTCTTGACTTGCCATTTTCTTGTATGCAATATCTGAAAAGAGGTTTTACTCTGGTTAATTAATATGAATTAAAAGTATTTTGCCTTCACTTCAAAGACGTTATA</gDNA_template>
            <first_frame> L  E  R  V  F  G  G  N  M  L  K  L  P  K  R  N  L  P  W  L  Q  L  R  R  L  S  T  A  I  R  Q  T  V  E  D  E  G  D  W  F  Y  S  S  E  W  W  G  T  T  S  G  G  G  D  T  V  F  R  S  I  S  D  K  G  N  G  V  V  S  V  V  A  Y  P  S  S  K  P  :  E  N  C  Y  W  G  K  T  E  N  W  L  Q  K  R  Y  E  K  M  Y  P  R  D  E  Q  E  G  N  F  R  I  L  G  Y  Q  W  R  N  L  H  F  N  E  E  T  R  Q  S  T  V  K  I  M  A  A  Y  R  D  S  A  P  G  S  I  Y  L  M  Q  Q  A  E  C  L  A  V  P   : Y  V  K  S  M  V  S  A  G  L  A  T  I  A  S  C  R  F  D  L  E  S  A  V  C  G  R  K  P  M  K  I  L  C  I  G  H  G  G  G  S  I  P  L  F  L  A  S  K  I  Q   : G  A  E  V  H  I  A  E  I  D  P  V  V  I  S  A  S  V  Q  A  M  G  F  P  S  Y  S  V  M  T  P  S  G  S  R  A  H  S  T  P  D  L  I  Q  E  V  Q  W  K  G  I  H  E  R  I  Q  L  H  E  S  D  A  E  K  F  L  L  E  N  K  N  L  Y  D  L  V  F  I  D  A  Y  D  G  E  D  I  F  P  H  T  L  W  D  P  H  S  P  F  L  N  A  L  A  D  Q  L  H  P  E  H  G  T  V  V  V  N  L  H  S  D  V  D  F  R  D  D  D  F  I  P  P  G  S  H  L  L  P  M  G  K  Y  I  S  K  V  C  R  S  Y  K  E  A  L  L  G  S  K  S  S  Y  N  G  L  A  Y  V  V  S  V  P  W  V  C  N  T  S  L  V  V  S  R  G  L  E  K  S  N  R  D  M  V  M  R  N  I  M  S  K  S  L  V  V  E  N  T  L  D  L  P  F  S  C  M  Q  Y  L  K  R  G  F  T  L  V  N  *  Y  E  L  K  V  F  C  L  H  F  K  D  V  I </first_frame>
            <second_frame>  *  R  G  F  L  V  E  I  C  *  S  C  L  N  G  I  C  H  G  C  S  *  D  D  Y  Q  R  R  F  D  K  L  *  K  M  K  A  T  G  F  I  H  R  N  G  G  A  Q  L  P  V  V  A  T  Q  F  S  D  Q  F  P  I  K  E  T  A  S  F  L  S  *  L  T  L  L  P  N  Q :   K  T  V  I  G  G  K  Q  R  I  G  F  K  R  G  M  K  R  C  I  Q  E  M  N  R  K  G  I  S  G  F  L  V  T  N  G  G  I  F  T  L  M  R  R  L  V  K  A  Q  L  K  *  W  L  L  I  G  I  Q  L  L  V  L  Y  T  *  C  S  R  Q  S  V  S  L  F  H  :  M  *  R  A  W  S  L  L  G  W  L  P  L  H  L  V  D  S  I  L  K  V  Q  F  V  G  E  N  Q  *  K  F  Y  A  L  G  M  A  E  E  A  Y  R  C  F  W  L  V  K  S  K  :  V  L  K  C  T  *  L  K  S  T  L  W  *  S  Q  P  Q  F  K  Q  W  G  S  H  L  T  Q  L  *  L  H  L  V  A  V  H  T  Q  L  L  I  L  S  K  K  F  N  G  K  A  F  M  R  G  F  N  Y  M  N  Q  M  L  R  N  S  S  S  R  T  K  I  F  M  I  L  F  S  *  T  H  M  T  G  K  I  S  F  L  T  P  Y  G  I  H  T  L  H  S  S  M  L  S  Q  T  N  F  T  L  S  M  E  L  L  S  *  T  F  T  Q  M  *  T  S  G  M  M  I  S  F  H  L  V  L  T  F  C  Q  W  E  S  I  F  R  K  C  A  D  H  I  K  K  L  Y  *  G  V  R  V  P  I  M  V  W  L  M  *  F  L  C  L  G  Y  V  I  H  L  L  L  *  A  E  V  *  R  N  L  I  E  I  W  L  *  G  I  S  C  Q  N  P  *  L  L  R  I  L  L  T  C  H  F  L  V  C  N  I  *  K  E  V  L  L  W  L  I  N  M  N  *  K  Y  F  A  F  T  S  K  T  L   </second_frame>
            <third_frame>   R  E  G  F  W  W  K  Y  V  E  V  A  *  T  E  F  A  M  A  A  A  E  T  I  I  N  G  D  S  T  N  C  R  R  *  R  R  L  V  L  F  I  G  M  V  G  H  N  F  R  W  W  R  H  S  F  P  I  N  F  R  *  R  K  R  R  R  F  C  R  S  L  P  F  F  Q  T   : R  K  L  L  L  G  E  N  R  E  L  A  S  K  E  V  *  K  D  V  S  K  R  *  T  G  R  E  F  Q  D  S  W  L  P  M  A  E  S  S  L  *  *  G  D  S  S  K  H  S  *  N  N  G  C  L  *  G  F  S  S  W  F  Y  I  L  D  A  A  G  R  V  S  R  C  S  I :   C  E  E  H  G  L  C  W  V  G  Y  H  C  I  L  *  I  R  S  *  K  C  S  L  W  E  K  T  N  E  N  F  M  H  W  A  W  R  R  K  H  T  V  V  F  G  *  *  N  P  R :   C  *  S  A  H  S  *  N  R  P  C  G  N  L  S  L  S  S  S  N  G  V  P  I  L  L  S  Y  D  S  I  W  *  P  C  T  L  N  S  *  S  Y  P  R  S  S  M  E  R  H  S  *  E  D  S  I  T  *  I  R  C  *  E  I  P  P  R  E  Q  K  S  L  *  S  C  F  H  R  R  I  *  R  G  R  Y  L  S  S  H  P  M  G  S  T  L  S  I  P  Q  C  S  R  R  P  T  S  P  *  A  W  N  C  C  R  K  P  S  L  R  C  R  L  Q  G  *  *  F  H  S  T  W  F  S  P  F  A  N  G  K  V  Y  F  E  S  V  P  I  I  *  R  S  S  I  R  E  *  E  F  L  *  W  S  G  L  C  S  F  C  A  L  G  M  *  Y  I  S  C  C  E  Q  R  F  R  E  I  *  *  R  Y  G  Y  E  E  Y  H  V  K  I  P  S  C  *  E  Y  S  *  L  A  I  F  L  Y  A  I  S  E  K  R  F  Y  S  G  *  L  I  *  I  K  S  I  L  P  S  L  Q  R  R  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55417" stop="55650"/>
                    <exon start="55746" stop="55974"/>
                    <exon start="56508" stop="56660"/>
                    <exon start="57620" stop="58293"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LERVFGGNMLKLPKRNLPWLQLRRLSTAIRQTVEDEGDWFYSSEWWGTTSGGGDTVFRSISDKGNGVVSVVAYPSSKPENCYWGKTENWLQKRYEKMYPRDEQEGNFRILGYQWRNLHFNEETRQSTVKIMAAYRDSAPGSIYLMQQAECLAVPYVKSMVSAGLATIASCRFDLESAVCGRKPMKILCIGHGGGSIPLFLASKIQGAEVHIAEIDPVVISASVQAMGFPSYSVMTPSGSRAHSTPDLIQEVQWKGIHERIQLHESDAEKFLLENKNLYDLVFIDAYDGEDIFPHTLWDPHSPFLNALADQLHPEHGTVVVNLHSDVDFRDDDFIPPGSHLLPMGKYISKVCRSYKEALLGSKSSYNGLAYVVSVPWVCNTSLVVSRGLEKSNRDMVMRNIMSKSLVVENTLDLPFSCMQYLKRGFTLVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="62361" PGL_stop="62682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62361" e_stop="62682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="62361" e_stop="62682" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62361" stop="62682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62361" stop="62665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAAATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAATTGTATTTCACTGCAACTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGGAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  K  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  L  Y  F  T  A  T  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  N  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  G  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  E  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="67759" PGL_stop="66327"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67759" e_stop="67610"/>
            <exon e_start="67057" e_stop="66944"/>
            <exon e_start="66725" e_stop="66327"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67759" e_stop="67610" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67609" i_stop="67058" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67057" e_stop="66944" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66943" i_stop="66726" i_length="218"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="66725" e_stop="66327" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67759" stop="67610"/>
              <exon start="67057" stop="66944"/>
              <exon start="66725" stop="66327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67727" stop="67610"/>
              <exon start="67057" stop="66944"/>
              <exon start="66725" stop="66535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAAAAAGCTCAGGTTGAATGTGGTAGCTCAATTTCTGGCCAAATATTTCTTCATAAGTGCTTTGTTAGTTATAATTATTATCCAAATGGGGCTCCCACAAAATCATCATCATCATCATCTTCATACTGGTCTCCATCTCCTTCAGCAG : GGACAGGCCAAAACACAGGGAAAACAGTGGCTATAATACTAGGAGGAGCAGCAGGAGTTGGTTTTCTAGTCATTTGCATGCTCTTTGCAAGGAACCAAATGAAGAAACATGATG : ATTATTGAAGGGATCAGCTGTGTATTATTATTATAAAAGGCTGGCAAAAGCTTTTTATGAGGTGGATTCTTTCCTTGTCAAGATTTTCTACCTAGAAGGAAAATATATTTTCTTGGAAATTCCTGAAAAAAAGTGAGGGAGTTTGTGAGCTGTAATTCTTGGAATTATTAGGTAAAAAGAGAAAAACAAAAATACTATTTTGGGGACATAAATTTTTGGAGAAATGATGTAACAATACATGTTTTTTTTGTCAACTATGAAGAAGATTGGCAAGAGCATTATAATGTTTTTTTGGCCTTTTTCTCCTATGGCCATGTGCATGTTGTATCTTTTCTCTTTGTCTCTGAATAATTGTTTCACCCTTTTTTTTCTTCTTCTAAAGTTTTTTACTTTTAGAAA</gDNA_template>
            <first_frame> S  K  K  L  R  L  N  V  V  A  Q  F  L  A  K  Y  F  F  I  S  A  L  L  V  I  I  I  I  Q  M  G  L  P  Q  N  H  H  H  H  H  L  H  T  G  L  H  L  L  Q  Q  :  G  Q  A  K  T  Q  G  K  Q  W  L  *  Y  *  E  E  Q  Q  E  L  V  F  *  S  F  A  C  S  L  Q  G  T  K  *  R  N  M  M  :  I  I  E  G  I  S  C  V  L  L  L  *  K  A  G  K  S  F  L  *  G  G  F  F  P  C  Q  D  F  L  P  R  R  K  I  Y  F  L  G  N  S  *  K  K  V  R  E  F  V  S  C  N  S  W  N  Y  *  V  K  R  E  K  Q  K  Y  Y  F  G  D  I  N  F  W  R  N  D  V  T  I  H  V  F  F  V  N  Y  E  E  D  W  Q  E  H  Y  N  V  F  L  A  F  F  S  Y  G  H  V  H  V  V  S  F  L  F  V  S  E  *  L  F  H  P  F  F  S  S  S  K  V  F  Y  F  *  K </first_frame>
            <second_frame>  P  K  S  S  G  *  M  W  *  L  N  F  W  P  N  I  S  S  *  V  L  C  *  L  *  L  L  S  K  W  G  S  H  K  I  I  I  I  I  I  F  I  L  V  S  I  S  F  S  R :   D  R  P  K  H  R  E  N  S  G  Y  N  T  R  R  S  S  R  S  W  F  S  S  H  L  H  A  L  C  K  E  P  N  E  E  T  *  * :   L  L  K  G  S  A  V  Y  Y  Y  Y  K  R  L  A  K  A  F  Y  E  V  D  S  F  L  V  K  I  F  Y  L  E  G  K  Y  I  F  L  E  I  P  E  K  K  *  G  S  L  *  A  V  I  L  G  I  I  R  *  K  E  K  N  K  N  T  I  L  G  T  *  I  F  G  E  M  M  *  Q  Y  M  F  F  L  S  T  M  K  K  I  G  K  S  I  I  M  F  F  W  P  F  S  P  M  A  M  C  M  L  Y  L  F  S  L  S  L  N  N  C  F  T  L  F  F  L  L  L  K  F  F  T  F  R   </second_frame>
            <third_frame>   Q  K  A  Q  V  E  C  G  S  S  I  S  G  Q  I  F  L  H  K  C  F  V  S  Y  N  Y  Y  P  N  G  A  P  T  K  S  S  S  S  S  S  S  Y  W  S  P  S  P  S  A   : G  T  G  Q  N  T  G  K  T  V  A  I  I  L  G  G  A  A  G  V  G  F  L  V  I  C  M  L  F  A  R  N  Q  M  K  K  H  D   : D  Y  *  R  D  Q  L  C  I  I  I  I  K  G  W  Q  K  L  F  M  R  W  I  L  S  L  S  R  F  S  T  *  K  E  N  I  F  S  W  K  F  L  K  K  S  E  G  V  C  E  L  *  F  L  E  L  L  G  K  K  R  K  T  K  I  L  F  W  G  H  K  F  L  E  K  *  C  N  N  T  C  F  F  C  Q  L  *  R  R  L  A  R  A  L  *  C  F  F  G  L  F  L  L  W  P  C  A  C  C  I  F  S  L  C  L  *  I  I  V  S  P  F  F  F  F  F  *  S  F  L  L  L  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67757" stop="67610"/>
                    <exon start="67057" stop="66944"/>
                    <exon start="66725" stop="66718"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKAQVECGSSISGQIFLHKCFVSYNYYPNGAPTKSSSSSSSYWSPSPSAGTGQNTGKTVAIILGGAAGVGFLVICMLFARNQMKKHDDY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="68549" PGL_stop="67784"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68549" e_stop="67784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="68549" e_stop="67784" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68549" stop="67976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68316" stop="67784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCCTCTCAAAATCTACAAAACAGCAAAAAACAACCACCATGTATAGTTTTTCAAGAATCTCTAAAAAATGGTAATGGGGTTGTCCAAGAAACCATTTTTATGCATTTTCTTGGCCATTCTAGCCATTTTCAAGAATCTCCCAAAAATGGGGTTGTCCAAGAAACCATTTTTTTGCATTTTCTGTGTTTATTTAGCCATTCTAGCAATTTTCAAGAATGTAGCACCAGCTGAATCTGCATCTGGAAACACTAATTTAGTGTACAAAGGTTGTGCAAAACAGGCATTATCAGATCCATCTGGTGTTTACTCACAAGCCCTTTCAACCCTTTTTGGCACTCTTGTTTCACAATCTTCAAAATCCAAGTTCTACAAAACTACAACTGGTACTGGCCAAACTACAATAACTGGTCTTTTTCAGTGTAGAGGTGACCTTACTAATATTGATTGTTACAACTGTGTAAATGGTTTGCCAATACTGATTGACAAGCTCTGTGGCACCCCTGTTGCTGCAAGAATCCAGCTTTTAGGCTGTTACATGCTGTATGAAGTCTCAGGCTTCCCACAAATCTCAGGAATGGAGATGTTGTACAAGACTTGTAGTGGAAAAAATGCACCAGGGAGTGGATTTGAGGAGAAGAGGGATACTGCTTTTTCAACACTGGAAAATGGAATGTCTAGTGCTAATAATGGATTTTACACTTCAAATTATGAGTCTGTTTTTGTTTTGGGACAATGTGAAGGGGATGTAGGCTCTTCTGATT</gDNA_template>
            <first_frame> L  F  P  L  K  I  Y  K  T  A  K  N  N  H  H  V  *  F  F  K  N  L  *  K  M  V  M  G  L  S  K  K  P  F  L  C  I  F  L  A  I  L  A  I  F  K  N  L  P  K  M  G  L  S  K  K  P  F  F  C  I  F  C  V  Y  L  A  I  L  A  I  F  K  N  V  A  P  A  E  S  A  S  G  N  T  N  L  V  Y  K  G  C  A  K  Q  A  L  S  D  P  S  G  V  Y  S  Q  A  L  S  T  L  F  G  T  L  V  S  Q  S  S  K  S  K  F  Y  K  T  T  T  G  T  G  Q  T  T  I  T  G  L  F  Q  C  R  G  D  L  T  N  I  D  C  Y  N  C  V  N  G  L  P  I  L  I  D  K  L  C  G  T  P  V  A  A  R  I  Q  L  L  G  C  Y  M  L  Y  E  V  S  G  F  P  Q  I  S  G  M  E  M  L  Y  K  T  C  S  G  K  N  A  P  G  S  G  F  E  E  K  R  D  T  A  F  S  T  L  E  N  G  M  S  S  A  N  N  G  F  Y  T  S  N  Y  E  S  V  F  V  L  G  Q  C  E  G  D  V  G  S  S  D  </first_frame>
            <second_frame>  F  F  L  S  K  S  T  K  Q  Q  K  T  T  T  M  Y  S  F  S  R  I  S  K  K  W  *  W  G  C  P  R  N  H  F  Y  A  F  S  W  P  F  *  P  F  S  R  I  S  Q  K  W  G  C  P  R  N  H  F  F  A  F  S  V  F  I  *  P  F  *  Q  F  S  R  M  *  H  Q  L  N  L  H  L  E  T  L  I  *  C  T  K  V  V  Q  N  R  H  Y  Q  I  H  L  V  F  T  H  K  P  F  Q  P  F  L  A  L  L  F  H  N  L  Q  N  P  S  S  T  K  L  Q  L  V  L  A  K  L  Q  *  L  V  F  F  S  V  E  V  T  L  L  I  L  I  V  T  T  V  *  M  V  C  Q  Y  *  L  T  S  S  V  A  P  L  L  L  Q  E  S  S  F  *  A  V  T  C  C  M  K  S  Q  A  S  H  K  S  Q  E  W  R  C  C  T  R  L  V  V  E  K  M  H  Q  G  V  D  L  R  R  R  G  I  L  L  F  Q  H  W  K  M  E  C  L  V  L  I  M  D  F  T  L  Q  I  M  S  L  F  L  F  W  D  N  V  K  G  M  *  A  L  L  I </second_frame>
            <third_frame>   F  S  S  Q  N  L  Q  N  S  K  K  Q  P  P  C  I  V  F  Q  E  S  L  K  N  G  N  G  V  V  Q  E  T  I  F  M  H  F  L  G  H  S  S  H  F  Q  E  S  P  K  N  G  V  V  Q  E  T  I  F  L  H  F  L  C  L  F  S  H  S  S  N  F  Q  E  C  S  T  S  *  I  C  I  W  K  H  *  F  S  V  Q  R  L  C  K  T  G  I  I  R  S  I  W  C  L  L  T  S  P  F  N  P  F  W  H  S  C  F  T  I  F  K  I  Q  V  L  Q  N  Y  N  W  Y  W  P  N  Y  N  N  W  S  F  S  V  *  R  *  P  Y  *  Y  *  L  L  Q  L  C  K  W  F  A  N  T  D  *  Q  A  L  W  H  P  C  C  C  K  N  P  A  F  R  L  L  H  A  V  *  S  L  R  L  P  T  N  L  R  N  G  D  V  V  Q  D  L  *  W  K  K  C  T  R  E  W  I  *  G  E  E  G  Y  C  F  F  N  T  G  K  W  N  V  *  C  *  *  W  I  L  H  F  K  L  *  V  C  F  C  F  G  T  M  *  R  G  C  R  L  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68480" stop="67785"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVMGLSKKPFLCIFLAILAIFKNLPKMGLSKKPFFCIFCVYLAILAIFKNVAPAESASGNTNLVYKGCAKQALSDPSGVYSQALSTLFGTLVSQSSKSKFYKTTTGTGQTTITGLFQCRGDLTNIDCYNCVNGLPILIDKLCGTPVAARIQLLGCYMLYEVSGFPQISGMEMLYKTCSGKNAPGSGFEEKRDTAFSTLENGMSSANNGFYTSNYESVFVLGQCEGDVGSSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="73901" PGL_stop="74968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73901" e_stop="74318"/>
            <exon e_start="74416" e_stop="74488"/>
            <exon e_start="74609" e_stop="74689"/>
            <exon e_start="74938" e_stop="74968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.548" e_score="0.988"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="73901" e_stop="74318" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.548">
            <gDNA_intron_boundary i_start="74319" i_stop="74415" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74416" e_stop="74488" e_length="73"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74489" i_stop="74608" i_length="120"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74609" e_stop="74689" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.984">
            <gDNA_intron_boundary i_start="74690" i_stop="74937" i_length="248"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74938" e_stop="74968" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73901" stop="74318"/>
              <exon start="74416" stop="74488"/>
              <exon start="74609" stop="74614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73982" stop="74318"/>
              <exon start="74416" stop="74488"/>
              <exon start="74609" stop="74689"/>
              <exon start="74938" stop="74968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73982" stop="74318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATATTTTGTGAATGTAAGAGATCGAAGAGAGGTCAAACCACTTCAATCAAATTCTTTTACGTGGAGAAGTAAAAGTTTCTCGTTGCGCGATAAACCTCTGGATGAGTTTGAGGTTCACAATGATTATAAAGAGATACCAGATATTCATCCAGAAGAAGGTGAAAATGGTTCCATCAGGAGTTCAGTCTGTGTGAAGGAGACGGTAAATGCAGACAACGATAATGGAGAGCCTACTTCTGCTGGGAGCATTGCCAGCGGTTCTGAAACTTTTGAAGATGCTCCTGATAGACACAGCTTTGAGCAGTCACTGGCCTATCTCACTACTGATTCTGTTTTCATTACTCCAAATTTGTATGATTTTTTCCAGTCTTCCCTTCCTAATATAGTGAAAGGTTGTCAATGGGTCTTGTTATATAG : TACGGCCAGACACGGTATATCACTCCGCACTCTTATTCGCAAGAGTGCTGATATTTCTGGTCCTTGCTTGCTG : ATTACTGGTGATAAGAAGGGTGCTGTGTTTGGTGGGTTGCTCGAGGCACCGTTAAAGCCTACTGCAAAGAGGAAATACCAA : GGAACAAATCAATCATTTGTATTCACAACTC</gDNA_template>
            <first_frame> H  I  L  *  M  *  E  I  E  E  R  S  N  H  F  N  Q  I  L  L  R  G  E  V  K  V  S  R  C  A  I  N  L  W  M  S  L  R  F  T  M  I  I  K  R  Y  Q  I  F  I  Q  K  K  V  K  M  V  P  S  G  V  Q  S  V  *  R  R  R  *  M  Q  T  T  I  M  E  S  L  L  L  L  G  A  L  P  A  V  L  K  L  L  K  M  L  L  I  D  T  A  L  S  S  H  W  P  I  S  L  L  I  L  F  S  L  L  Q  I  C  M  I  F  S  S  L  P  F  L  I  *  *  K  V  V  N  G  S  C  Y  I   : V  R  P  D  T  V  Y  H  S  A  L  L  F  A  R  V  L  I  F  L  V  L  A  C  * :   L  L  V  I  R  R  V  L  C  L  V  G  C  S  R  H  R  *  S  L  L  Q  R  G  N  T  K :   E  Q  I  N  H  L  Y  S  Q  L </first_frame>
            <second_frame>  I  F  C  E  C  K  R  S  K  R  G  Q  T  T  S  I  K  F  F  Y  V  E  K  *  K  F  L  V  A  R  *  T  S  G  *  V  *  G  S  Q  *  L  *  R  D  T  R  Y  S  S  R  R  R  *  K  W  F  H  Q  E  F  S  L  C  E  G  D  G  K  C  R  Q  R  *  W  R  A  Y  F  C  W  E  H  C  Q  R  F  *  N  F  *  R  C  S  *  *  T  Q  L  *  A  V  T  G  L  S  H  Y  *  F  C  F  H  Y  S  K  F  V  *  F  F  P  V  F  P  S  *  Y  S  E  R  L  S  M  G  L  V  I  *  :  Y  G  Q  T  R  Y  I  T  P  H  S  Y  S  Q  E  C  *  Y  F  W  S  L  L  A   : D  Y  W  *  *  E  G  C  C  V  W  W  V  A  R  G  T  V  K  A  Y  C  K  E  E  I  P   : R  N  K  S  I  I  C  I  H  N   </second_frame>
            <third_frame>   Y  F  V  N  V  R  D  R  R  E  V  K  P  L  Q  S  N  S  F  T  W  R  S  K  S  F  S  L  R  D  K  P  L  D  E  F  E  V  H  N  D  Y  K  E  I  P  D  I  H  P  E  E  G  E  N  G  S  I  R  S  S  V  C  V  K  E  T  V  N  A  D  N  D  N  G  E  P  T  S  A  G  S  I  A  S  G  S  E  T  F  E  D  A  P  D  R  H  S  F  E  Q  S  L  A  Y  L  T  T  D  S  V  F  I  T  P  N  L  Y  D  F  F  Q  S  S  L  P  N  I  V  K  G  C  Q  W  V  L  L  Y  S :   T  A  R  H  G  I  S  L  R  T  L  I  R  K  S  A  D  I  S  G  P  C  L  L  :  I  T  G  D  K  K  G  A  V  F  G  G  L  L  E  A  P  L  K  P  T  A  K  R  K  Y  Q  :  G  T  N  Q  S  F  V  F  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73903" stop="74318"/>
                    <exon start="74416" stop="74488"/>
                    <exon start="74609" stop="74689"/>
                    <exon start="74938" stop="74967"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFVNVRDRREVKPLQSNSFTWRSKSFSLRDKPLDEFEVHNDYKEIPDIHPEEGENGSIRSSVCVKETVNADNDNGEPTSAGSIASGSETFEDAPDRHSFEQSLAYLTTDSVFITPNLYDFFQSSLPNIVKGCQWVLLYSTARHGISLRTLIRKSADISGPCLLITGDKKGAVFGGLLEAPLKPTAKRKYQGTNQSFVFTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="76412" PGL_stop="76991"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76412" e_stop="76428"/>
            <exon e_start="76713" e_stop="76991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.020" acc_prob="0.000" e_score="0.647"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.647">
            <gDNA_exon_boundary e_start="76412" e_stop="76428" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.020" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76429" i_stop="76712" i_length="284"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="76713" e_stop="76991" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76412" stop="76428"/>
              <exon start="76713" stop="76991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224311" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTTTTTGTTAGCT : ATAATAGCGTACAAAGTGCATTTTATATCGACTATAACTAAACATGAAATATCGATGTACTGTAACTGATCACTATCCATTCAGAGTTTTGCTTCCAGGAAGGGCAATATGGTTACACAAGAATGATACAACAGAATACTAATAACCCAAGGCTGGTTTTGGGATGACCGAATAAACTCTGCACTTCAGATGTTATCTCAAGTTTGTGGTTATGTCTATTAGCTTGCCCACCCCCAAAATTTAGCAAAAACCAGAAGTACATATTAAAGAACAGGACTC</gDNA_template>
            <first_frame> S  F  F  C  *  L :   *  *  R  T  K  C  I  L  Y  R  L  *  L  N  M  K  Y  R  C  T  V  T  D  H  Y  P  F  R  V  L  L  P  G  R  A  I  W  L  H  K  N  D  T  T  E  Y  *  *  P  K  A  G  F  G  M  T  E  *  T  L  H  F  R  C  Y  L  K  F  V  V  M  S  I  S  L  P  T  P  K  I  *  Q  K  P  E  V  H  I  K  E  Q  D   </first_frame>
            <second_frame>  H  F  F  V  S   : Y  N  S  V  Q  S  A  F  Y  I  D  Y  N  *  T  *  N  I  D  V  L  *  L  I  T  I  H  S  E  F  C  F  Q  E  G  Q  Y  G  Y  T  R  M  I  Q  Q  N  T  N  N  P  R  L  V  L  G  *  P  N  K  L  C  T  S  D  V  I  S  S  L  W  L  C  L  L  A  C  P  P  P  K  F  S  K  N  Q  K  Y  I  L  K  N  R  T  </second_frame>
            <third_frame>   I  F  L  L  A  :  I  I  A  Y  K  V  H  F  I  S  T  I  T  K  H  E  I  S  M  Y  C  N  *  S  L  S  I  Q  S  F  A  S  R  K  G  N  M  V  T  Q  E  *  Y  N  R  I  L  I  T  Q  G  W  F  W  D  D  R  I  N  S  A  L  Q  M  L  S  Q  V  C  G  Y  V  Y  *  L  A  H  P  Q  N  L  A  K  T  R  S  T  Y  *  R  T  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="84864" PGL_stop="76618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84864" e_stop="84760"/>
            <exon e_start="84632" e_stop="84547"/>
            <exon e_start="83791" e_stop="83720"/>
            <exon e_start="83601" e_stop="83539"/>
            <exon e_start="83261" e_stop="83175"/>
            <exon e_start="82271" e_stop="82130"/>
            <exon e_start="82041" e_stop="81920"/>
            <exon e_start="81736" e_stop="81620"/>
            <exon e_start="80953" e_stop="80858"/>
            <exon e_start="80720" e_stop="80661"/>
            <exon e_start="80097" e_stop="80023"/>
            <exon e_start="79172" e_stop="79068"/>
            <exon e_start="78952" e_stop="78836"/>
            <exon e_start="78728" e_stop="78651"/>
            <exon e_start="78542" e_stop="78446"/>
            <exon e_start="77934" e_stop="77883"/>
            <exon e_start="77350" e_stop="77280"/>
            <exon e_start="77191" e_stop="76618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.804" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.982" e_score="0.987"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84864" e_stop="84760" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="84759" i_stop="84633" i_length="127"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84632" e_stop="84547" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="84546" i_stop="83792" i_length="755"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83791" e_stop="83720" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="83719" i_stop="83602" i_length="118"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83601" e_stop="83539" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.975">
            <gDNA_intron_boundary i_start="83538" i_stop="83262" i_length="277"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="83261" e_stop="83175" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83174" i_stop="82272" i_length="903"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="82271" e_stop="82130" e_length="142"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="82129" i_stop="82042" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="82041" e_stop="81920" e_length="122"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="81919" i_stop="81737" i_length="183"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="81736" e_stop="81620" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81619" i_stop="80954" i_length="666"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="80953" e_stop="80858" e_length="96"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80857" i_stop="80721" i_length="137"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="80720" e_stop="80661" e_length="60"/>
          </exon>
          <intron i_serial="10" don_prob="0.988" acc_prob="0.990">
            <gDNA_intron_boundary i_start="80660" i_stop="80098" i_length="563"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="80097" e_stop="80023" e_length="75"/>
          </exon>
          <intron i_serial="11" don_prob="0.995" acc_prob="0.979">
            <gDNA_intron_boundary i_start="80022" i_stop="79173" i_length="850"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="79172" e_stop="79068" e_length="105"/>
          </exon>
          <intron i_serial="12" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79067" i_stop="78953" i_length="115"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="78952" e_stop="78836" e_length="117"/>
          </exon>
          <intron i_serial="13" don_prob="0.804" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78835" i_stop="78729" i_length="107"/>
          </intron>
          <exon e_serial="14" e_score="0.987">
            <gDNA_exon_boundary e_start="78728" e_stop="78651" e_length="78"/>
          </exon>
          <intron i_serial="14" don_prob="0.776" acc_prob="0.982">
            <gDNA_intron_boundary i_start="78650" i_stop="78543" i_length="108"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="78542" e_stop="78446" e_length="97"/>
          </exon>
          <intron i_serial="15" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="78445" i_stop="77935" i_length="511"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="77934" e_stop="77883" e_length="52"/>
          </exon>
          <intron i_serial="16" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="77882" i_stop="77351" i_length="532"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="77350" e_stop="77280" e_length="71"/>
          </exon>
          <intron i_serial="17" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77279" i_stop="77192" i_length="88"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="77191" e_stop="76618" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84864" stop="84760"/>
              <exon start="84632" stop="84547"/>
              <exon start="83791" stop="83720"/>
              <exon start="83601" stop="83539"/>
              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82130"/>
              <exon start="82041" stop="81945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84853" stop="84760"/>
              <exon start="84632" stop="84547"/>
              <exon start="83791" stop="83720"/>
              <exon start="83601" stop="83539"/>
              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84852" stop="84760"/>
              <exon start="84632" stop="84547"/>
              <exon start="83791" stop="83720"/>
              <exon start="83601" stop="83539"/>
              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82130"/>
              <exon start="82041" stop="82030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84849" stop="84760"/>
              <exon start="84632" stop="84547"/>
              <exon start="83791" stop="83720"/>
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              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84847" stop="84760"/>
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              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84845" stop="84760"/>
              <exon start="84632" stop="84547"/>
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              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84842" stop="84760"/>
              <exon start="84632" stop="84547"/>
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              <exon start="81736" stop="81685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84837" stop="84760"/>
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              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84836" stop="84760"/>
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              <exon start="82271" stop="82217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84831" stop="84760"/>
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              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84831" stop="84760"/>
              <exon start="84632" stop="84547"/>
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              <exon start="81736" stop="81694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84831" stop="84760"/>
              <exon start="84632" stop="84547"/>
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              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84830" stop="84760"/>
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              <exon start="82271" stop="82130"/>
              <exon start="82041" stop="81940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84830" stop="84760"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84828" stop="84760"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84827" stop="84760"/>
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              <exon start="83261" stop="83175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84827" stop="84760"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84809" stop="84760"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84800" stop="84760"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84776" stop="84760"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82213" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82203" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82191" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80879" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80693" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
              <exon start="77350" stop="77308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78897" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
              <exon start="77350" stop="77280"/>
              <exon start="77191" stop="76797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78847" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
              <exon start="77350" stop="77280"/>
              <exon start="77191" stop="76945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78841" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
              <exon start="77350" stop="77280"/>
              <exon start="77191" stop="76773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77329" stop="77280"/>
              <exon start="77191" stop="76818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77328" stop="77280"/>
              <exon start="77191" stop="76618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77328" stop="77280"/>
              <exon start="77191" stop="76622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77328" stop="77280"/>
              <exon start="77191" stop="76703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77320" stop="77280"/>
              <exon start="77191" stop="76802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77187" stop="76715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77164" stop="76928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77132" stop="76620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77130" stop="76718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA : TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT : GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG : ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA : GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG : CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG : TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG : ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG : GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG : GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG : ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG : GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG : GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG : GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA : ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG : TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG : AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG : GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</gDNA_template>
            <first_frame> S  F  I  S  L  A  L  T  L  H  Q  L  L  L  C  C  L  N  P  S  S  T  S  L  P  F  S  L  F  Q  Q  *  T  V  Q  :  F  P  A  R  C  R  R  I  Q  *  F  R  R  S  P  D  S  F  S  R  S  V  *  L  K  D  I  S  L :   I  M  A  N  V  L  L  L  E  S  H  *  R  Q  M  T  S  S  L  L  K  L  A  R :   *  L  N  P  D  L  Y  R  L  L  A  F  L  G  C  W  E  C  S  K  * :   N  G  M  V  *  C  C  Q  I  L  H  W  N  N  N  C  I  L  Q  G  K  S  *  A  M  L  Y  I  S :   M  M  L  L  A  G  *  L  Q  G  *  K  R  K  G  M  R  Q  G  G  Y  L  P  R  L  K  D  K  Y  P  W  Q  P  L  Q  Q  L  A  L  L  L  *  A  T  G  K  E  :  L  P  R  M  R  M  W  A  L  M  E  R  K  F  A  L  G  Y  H  T  L  S  L  R  L  L  L  N  V  M  L  V  F  H  N  K  G  K  N  D  R :   Y  P  Q  H  W  P  L  W  M  L  W  R  D  I  P  N  *  I  V  F  P  F  T  K  P  T  S  R  A  F  C  L  W  I  F  T  M  L  R :   T  *  L  L  L  V  E  S  I  Q  T  L  W  S  L  I  D  L  Q  D  R  S  Y  Q  H  *  V  V  I  Q  R  G :   L  P  V  L  N  L  R  L  R  V  N  *  W  S  L  V  Q  Q  I  R :   Q  F  V  C  G  K  V  P  K  M  E  I  M  T  V  G  M  S  *  R  I  I  L  Q  R :   C  K  L  S  L  S  M  Q  P  I  I  I  L  L  L  L  L  L  I  A  R  G  A  F  M  I  L  L  L  V  Y  A  L  H  R :   *  Q  M  L  Q  N  L  R  A  I  L  L  Q  L  S  T  L  M  V  *  S  L  E  Q  G  L  Q  G  L  W  S  R  Y  G  M  *  K  V  R :   Q  M  L  Q  N  L  M  A  M  L  G  L  *  L  P  F  P  F  Q  K  M  V  I  S  *  Q :   L  L  L  M  M  V  L  N  F  G  I  Y  A  N  *  R  T  S  K  L  S  L  L  T  M  I  T  H  Q  L  N  Q  :  W  N  L  T  I  V  E  V  I  L  P  *  E  A  Q  I  Y   : E  F  I  K  S  P  A  S  R  L  N  G  I  P  S  K  P  S  P  T  Y  Q  A  Q  :  A  K  Q  H  V  *  N  L  V  Q  M  Q  H  I  *  L  S  D  L  W  T  V  I  *  E  Y  S  G  C  L  V  R  I  K  W  R  I  R  L  I  S  S  V  K  A  N  S  F  F  L  C  I  C  C  K  I  T  V  L  S  R  G  *  E  V  D  E  S  P  V  L  *  Y  V  L  L  V  F  A  K  F  W  G  W  A  S  *  *  T  *  P  Q  T  *  D  N  I  *  S  A  E  F  I  R  S  S  Q  N  Q  P  W  V  I  S  I  L  L  Y  H  S  C  V  T  I  L  P  F  L  E  A  K  L  *  M  D  S  D  Q  L  Q  Y  I  D  I  S  C  L  V  I  V  D  I  K  C  T  L  Y  A  I  I  F  F  H  V  Q  E  L  I  *  I  H  C  C  V  H  H  E  R  L  K  V  K  I  V  N  L  T  C  S  L  L  </first_frame>
            <second_frame>  H  S  S  P  S  L  S  L  C  I  S  S  F  C  A  A  *  T  L  A  L  P  L  C  L  S  L  S  F  N  N  E  L  F  N :   F  R  R  G  A  G  G  S  S  S  F  E  E  V  R  T  P  F  R  E  A  F  N  *  K  T  Y  L   : *  L  W  Q  M  S  Y  Y  W  R  A  I  D  G  R  *  H  H  P  C  *  N  W  Q   : D  S  *  T  P  T  C  T  G  C  *  H  S  W  D  V  G  N  V  P  N   : R  M  G  W  S  D  A  V  K  F  C  I  G  T  T  I  A  Y  C  K  A  R  A  E  P  C  F  I  S   : A  *  C  C  L  Q  G  N  C  K  A  E  K  G  K  G  *  G  K  G  V  T  C  P  G  *  K  T  N  T  H  G  S  H  Y  S  S  W  H  Y  C  C  K  Q  R  E  K  S :   C  R  G  *  G  C  G  P  *  W  K  E  N  S  P  W  D  I  T  L  C  H  *  D  S  Y  *  M  *  C  W  S  F  T  T  K  E  K  T  T   : D  T  R  N  I  G  P  C  G  C  C  G  E  I  Y  P  T  E  *  F  S  P  S  Q  N  Q  Q  A  G  H  F  V  S  G  Y  S  L  C  *   : G  H  N  C  Y  W  W  S  R  F  K  R  C  G  L  *  S  T  F  R  T  D  H  I  N  T  K  W  S  F  K  E   : G  Y  Q  C  *  I  C  G  *  G  *  T  S  G  L  W  F  S  R  *   : D  S  S  C  V  A  K  F  R  K  W  K  L  *  L  *  A  C  L  E  G  S  Y  C  R   : G  A  S  C  H  C  P  C  N  Q  *  L  F  C  Y  C  F  S  *  *  H  V  V  L  L  *  S  C  F  W  F  M  P  Y  T   : G  S  R  C  F  R  I  *  G  L  Y  F  C  S  F  P  P  *  W  S  D  P  W  N  R  D  F  R  V  F  G  Q  D  M  G  C  K  K  S   : G  K  C  C  K  I  *  W  P  C  W  V  C  N  C  H  F  L  F  R  K  W  L  F  L  S   : N  C  C  S  *  W  C  *  T  L  G  F  T  Q  I  E  E  L  Q  N  F  R  S  L  R  *  *  H  T  N  S  I  S :   G  I  *  P  *  W  K  L  S  C  L  R  R  L  R  Y  T  :  S  L  S  S  R  Q  R  Q  G  *  M  E  F  H  Q  N  L  P  R  L  I  R  H  R :   Q  S  N  M  S  E  I  W  S  R  C  S  I  Y  S  C  R  I  Y  G  P  *  S  K  N  I  R  A  A  W  *  G  S  N  G  G  L  G  S  F  P  A  L  K  Q  T  A  F  S  F  A  S  A  A  R  S  Q  C  Y  L  E  G  R  R  S  M  R  V  L  F  F  N  M  Y  F  W  F  L  L  N  F  G  G  G  Q  A  N  R  H  N  H  K  L  E  I  T  S  E  V  Q  S  L  F  G  H  P  K  T  S  L  G  L  L  V  F  C  C  I  I  L  V  *  P  Y  C  P  S  W  K  Q  N  S  E  W  I  V  I  S  Y  S  T  S  I  F  H  V  *  L  *  S  I  *  N  A  L  C  T  L  L  F  F  F  M  F  K  S  *  S  E  F  I  V  V  Y  I  M  K  G  S  K  *  K  *  *  I  *  L  V  V  C  Y </second_frame>
            <third_frame>   I  H  L  P  R  S  H  S  A  S  A  P  F  V  L  L  K  P  *  L  Y  L  F  A  F  L  S  L  S  T  M  N  C  S   : I  S  G  E  V  P  E  D  P  V  V  S  K  K  S  G  L  L  F  E  K  R  L  I  E  R  H  I  S  :  D  Y  G  K  C  P  I  T  G  E  P  L  T  A  D  D  I  I  P  V  K  T  G  K  :  I  V  K  P  R  P  V  Q  A  A  S  I  P  G  M  L  G  M  F  Q  I  :  E  W  D  G  L  M  L  S  N  F  A  L  E  Q  Q  L  H  T  A  R  Q  E  L  S  H  A  L  Y  Q  :  H  D  A  A  C  R  V  I  A  R  L  K  K  E  R  D  E  A  R  G  L  L  A  Q  A  E  R  Q  I  P  M  A  A  T  T  A  V  G  T  T  A  V  S  N  G  K  R   : V  A  E  D  E  D  V  G  P  D  G  K  K  I  R  P  G  I  S  H  S  V  I  E  T  L  T  E  C  N  A  G  L  S  Q  Q  R  K  K  R  Q  :  I  P  A  T  L  A  P  V  D  A  V  A  R  Y  T  Q  L  N  S  F  P  L  H  K  T  N  K  P  G  I  L  S  L  D  I  H  Y  A  K  :  D  I  I  A  T  G  G  V  D  S  N  A  V  V  F  D  R  P  S  G  Q  I  I  S  T  L  S  G  H  S  K  R  :  V  T  S  V  K  F  A  A  E  G  E  L  V  V  S  G  S  A  D  K  :  T  V  R  V  W  Q  S  S  E  N  G  N  Y  D  C  R  H  V  L  K  D  H  T  A  E  :  V  Q  A  V  T  V  H  A  T  N  N  Y  F  V  T  A  S  L  D  S  T  W  C  F  Y  D  L  A  S  G  L  C  L  T  Q  :  V  A  D  A  S  E  S  E  G  Y  T  S  A  A  F  H  P  D  G  L  I  L  G  T  G  T  S  G  S  L  V  K  I  W  D  V  K  S  Q  :  A  N  V  A  K  F  D  G  H  V  G  S  V  T  A  I  S  F  S  E  N  G  Y  F  L  A  :  T  A  A  H  D  G  V  K  L  W  D  L  R  K  L  K  N  F  K  T  F  A  P  Y  D  D  N  T  P  T  Q  S   : V  E  F  D  H  S  G  S  Y  L  A  L  G  G  S  D  I  R :   V  Y  Q  V  A  S  V  K  A  E  W  N  S  I  K  T  F  P  D  L  S  G  T   : G  K  A  T  C  L  K  F  G  P  D  A  A  Y  I  A  V  G  S  M  D  R  N  L  R  I  F  G  L  P  G  E  D  Q  M  E  D  *  A  H  F  Q  R  *  S  K  Q  L  F  P  L  H  L  L  Q  D  H  S  A  I  S  R  V  G  G  R  *  E  S  C  S  L  I  C  T  S  G  F  C  *  I  L  G  V  G  K  L  I  D  I  T  T  N  L  R  *  H  L  K  C  R  V  Y  S  V  I  P  K  P  A  L  G  Y  *  Y  S  V  V  S  F  L  C  N  H  I  A  L  P  G  S  K  T  L  N  G  *  *  S  V  T  V  H  R  Y  F  M  F  S  Y  S  R  Y  K  M  H  F  V  R  Y  Y  F  F  S  C  S  R  V  D  L  N  S  L  L  C  T  S  *  K  A  Q  S  K  N  S  K  F  N  L  *  F  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84805" stop="84760"/>
                    <exon start="84632" stop="84547"/>
                    <exon start="83791" stop="83720"/>
                    <exon start="83601" stop="83539"/>
                    <exon start="83261" stop="83175"/>
                    <exon start="82271" stop="82130"/>
                    <exon start="82041" stop="81920"/>
                    <exon start="81736" stop="81620"/>
                    <exon start="80953" stop="80858"/>
                    <exon start="80720" stop="80661"/>
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                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLFAFLSLSTMNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARGLLAQAERQIPMAATTAVGTTAVSNGKRVAEDEDVGPDGKKIRPGISHSVIETLTECNAGLSQQRKKRQIPATLAPVDAVARYTQLNSFPLHKTNKPGILSLDIHYAKDIIATGGVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGELVVSGSADKTVRVWQSSENGNYDCRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLTQVADASESEGYTSAAFHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAHDGVKLWDLRKLKNFKTFAPYDDNTPTQSVEFDHSGSYLALGGSDIRVYQVASVKAEWNSIKTFPDLSGTGKATCLKFGPDAAYIAVGSMDRNLRIFGLPGEDQMED*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
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                <orf_info>
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                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSNGGLGSFPALKQTAFSFASAARSQCYLEGRRSMRVLFFNMYFWFLLNFGGGQANRHNHKLEITSEVQSLFGHPKTSLGLLVFCCIILV*</predicted_protein_sequence>
            </orf_entry>
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        </three_phase_translation>
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            <gDNA_exon_coordinates>
              <exon start="83575" stop="83539"/>
              <exon start="83261" stop="83175"/>
              <exon start="82271" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82213" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82203" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82191" stop="82130"/>
              <exon start="82041" stop="81920"/>
              <exon start="81736" stop="81620"/>
              <exon start="80953" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80879" stop="80858"/>
              <exon start="80720" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80693" stop="80661"/>
              <exon start="80097" stop="80023"/>
              <exon start="79172" stop="79068"/>
              <exon start="78952" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79103" stop="79068"/>
              <exon start="78952" stop="78836"/>
              <exon start="78728" stop="78651"/>
              <exon start="78542" stop="78446"/>
              <exon start="77934" stop="77883"/>
              <exon start="77772" stop="77766"/>
              <exon start="77350" stop="77280"/>
              <exon start="77191" stop="77017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77329" stop="77280"/>
              <exon start="77191" stop="76818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77328" stop="77280"/>
              <exon start="77191" stop="76618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77328" stop="77280"/>
              <exon start="77191" stop="76622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77328" stop="77280"/>
              <exon start="77191" stop="76703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77320" stop="77280"/>
              <exon start="77191" stop="76802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77187" stop="76715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77164" stop="76928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77132" stop="76620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77130" stop="76718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTCATCTCCCTCGCTCTCACTCTGCATCAGCTCCTTTTGTGCTGCTTAAACCCTAGCTCTACCTCTTTGCCTTTCTCTCTCTTTCAACAATGAACTGTTCAA : TTTCCGGCGAGGTGCCGGAGGATCCAGTAGTTTCGAAGAAGTCCGGACTCCTTTTCGAGAAGCGTTTAATTGAAAGACATATCTCT : GATTATGGCAAATGTCCTATTACTGGAGAGCCATTGACGGCAGATGACATCATCCCTGTTAAAACTGGCAAG : ATAGTTAAACCCCGACCTGTACAGGCTGCTAGCATTCCTGGGATGTTGGGAATGTTCCAAATA : GAATGGGATGGTCTGATGCTGTCAAATTTTGCATTGGAACAACAATTGCATACTGCAAGGCAAGAGCTGAGCCATGCTTTATATCAG : CATGATGCTGCTTGCAGGGTAATTGCAAGGCTGAAAAAGGAAAGGGATGAGGCAAGGGGGTTACTTGCCCAGGCTGAAAGACAAATACCCATGGCAGCCACTACAGCAGTTGGCACTACTGCTGTAAGCAACGGGAAAAGAG : TTGCCGAGGATGAGGATGTGGGCCCTGATGGAAAGAAAATTCGCCCTGGGATATCACACTCTGTCATTGAGACTCTTACTGAATGTAATGCTGGTCTTTCACAACAAAGGAAAAAACGACAG : ATACCCGCAACATTGGCCCCTGTGGATGCTGTGGCGAGATATACCCAACTGAATAGTTTTCCCCTTCACAAAACCAACAAGCCGGGCATTTTGTCTCTGGATATTCACTATGCTAAG : GACATAATTGCTACTGGTGGAGTCGATTCAAACGCTGTGGTCTTTGATCGACCTTCAGGACAGATCATATCAACACTAAGTGGTCATTCAAAGAGG : GTTACCAGTGTTAAATTTGCGGCTGAGGGTGAACTAGTGGTCTCTGGTTCAGCAGATAAG : ACAGTTCGTGTGTGGCAAAGTTCCGAAAATGGAAATTATGACTGTAGGCATGTCTTGAAGGATCATACTGCAGAG : GTGCAAGCTGTCACTGTCCATGCAACCAATAATTATTTTGTTACTGCTTCTCTTGATAGCACGTGGTGCTTTTATGATCTTGCTTCTGGTTTATGCCTTACACAG : GTAGCAGATGCTTCAGAATCTGAGGGCTATACTTCTGCAGCTTTCCACCCTGATGGTCTGATCCTTGGAACAGGGACTTCAGGGTCTTTGGTCAAGATATGGGATGTAAAAAGTCAG : GCAAATGTTGCAAAATTTGATGGCCATGTTGGGTCTGTAACTGCCATTTCCTTTTCAGAAAATGGTTATTTCTTAGCA : ACTGCTGCTCATGATGGTGTTAAACTTTGGGATTTACGCAAATTGAAGAACTTCAAAACTTTCGCTCCTTACGATGATAACACACCAACTCAATCAG : TGGAATTTGACCATAGTGGAAGTTATCTTGCCTTAGGAGGCTCAGATATACG : ATTTTTG : AGTTTATCAAGTCGCCAGCGTCAAGGCTGAATGGAATTCCATCAAAACCTTCCCCGACTTATCAGGCACAG : GCAAAGCAACATGTCTGAAATTTGGTCCAGATGCAGCATATATAGCTGTCGGATCTATGGACCGTAATCTAAGAATATTCGGGCTGCCTGGTGAGGATCAAATGGAGGATTAGGCTCATTTCCAGCGTTAAAGCAAACAGCTTTTTCCTTTGCATCTGCTGCAAGATCACAGTGCTATCTCGAGGGTAGGAGGTCGATGAGAGTCCTGTTCTTTAATATGTACTTCTGGTTTTTGCTAAATTTTGGGGGTGGGCAAGCTAATAGACATAACCACAAACTTGAGATAACATCTGAAGTGCAGAGTTTATTCGGTCATCCCAAAACCAGCCTTGGGTTATTAGTATTCTGTTGTATCATTCTTGTGTAACCATATTGCCCTTCCTGGAAGCAAAACTCTGAATGGATAGTGATCAGTTACAGTACATCGATATTTCATGTTTAGTTATAGTCGATATAAAATGCACTTTGTACGCTATTATTTTTTTTCATGTTCAAGAGTTGATCTGAATTCATTGTTGTGTACATCATGAAAGGCTCAAAGTAAAAATAGTAAATTTAACTTGTAGTTTGCTAT</gDNA_template>
            <first_frame> S  F  I  S  L  A  L  T  L  H  Q  L  L  L  C  C  L  N  P  S  S  T  S  L  P  F  S  L  F  Q  Q  *  T  V  Q  :  F  P  A  R  C  R  R  I  Q  *  F  R  R  S  P  D  S  F  S  R  S  V  *  L  K  D  I  S  L :   I  M  A  N  V  L  L  L  E  S  H  *  R  Q  M  T  S  S  L  L  K  L  A  R :   *  L  N  P  D  L  Y  R  L  L  A  F  L  G  C  W  E  C  S  K  * :   N  G  M  V  *  C  C  Q  I  L  H  W  N  N  N  C  I  L  Q  G  K  S  *  A  M  L  Y  I  S :   M  M  L  L  A  G  *  L  Q  G  *  K  R  K  G  M  R  Q  G  G  Y  L  P  R  L  K  D  K  Y  P  W  Q  P  L  Q  Q  L  A  L  L  L  *  A  T  G  K  E  :  L  P  R  M  R  M  W  A  L  M  E  R  K  F  A  L  G  Y  H  T  L  S  L  R  L  L  L  N  V  M  L  V  F  H  N  K  G  K  N  D  R :   Y  P  Q  H  W  P  L  W  M  L  W  R  D  I  P  N  *  I  V  F  P  F  T  K  P  T  S  R  A  F  C  L  W  I  F  T  M  L  R :   T  *  L  L  L  V  E  S  I  Q  T  L  W  S  L  I  D  L  Q  D  R  S  Y  Q  H  *  V  V  I  Q  R  G :   L  P  V  L  N  L  R  L  R  V  N  *  W  S  L  V  Q  Q  I  R :   Q  F  V  C  G  K  V  P  K  M  E  I  M  T  V  G  M  S  *  R  I  I  L  Q  R :   C  K  L  S  L  S  M  Q  P  I  I  I  L  L  L  L  L  L  I  A  R  G  A  F  M  I  L  L  L  V  Y  A  L  H  R :   *  Q  M  L  Q  N  L  R  A  I  L  L  Q  L  S  T  L  M  V  *  S  L  E  Q  G  L  Q  G  L  W  S  R  Y  G  M  *  K  V  R :   Q  M  L  Q  N  L  M  A  M  L  G  L  *  L  P  F  P  F  Q  K  M  V  I  S  *  Q :   L  L  L  M  M  V  L  N  F  G  I  Y  A  N  *  R  T  S  K  L  S  L  L  T  M  I  T  H  Q  L  N  Q  :  W  N  L  T  I  V  E  V  I  L  P  *  E  A  Q  I  Y   : D  F  * :   V  Y  Q  V  A  S  V  K  A  E  W  N  S  I  K  T  F  P  D  L  S  G  T   : G  K  A  T  C  L  K  F  G  P  D  A  A  Y  I  A  V  G  S  M  D  R  N  L  R  I  F  G  L  P  G  E  D  Q  M  E  D  *  A  H  F  Q  R  *  S  K  Q  L  F  P  L  H  L  L  Q  D  H  S  A  I  S  R  V  G  G  R  *  E  S  C  S  L  I  C  T  S  G  F  C  *  I  L  G  V  G  K  L  I  D  I  T  T  N  L  R  *  H  L  K  C  R  V  Y  S  V  I  P  K  P  A  L  G  Y  *  Y  S  V  V  S  F  L  C  N  H  I  A  L  P  G  S  K  T  L  N  G  *  *  S  V  T  V  H  R  Y  F  M  F  S  Y  S  R  Y  K  M  H  F  V  R  Y  Y  F  F  S  C  S  R  V  D  L  N  S  L  L  C  T  S  *  K  A  Q  S  K  N  S  K  F  N  L  *  F  A   </first_frame>
            <second_frame>  H  S  S  P  S  L  S  L  C  I  S  S  F  C  A  A  *  T  L  A  L  P  L  C  L  S  L  S  F  N  N  E  L  F  N :   F  R  R  G  A  G  G  S  S  S  F  E  E  V  R  T  P  F  R  E  A  F  N  *  K  T  Y  L   : *  L  W  Q  M  S  Y  Y  W  R  A  I  D  G  R  *  H  H  P  C  *  N  W  Q   : D  S  *  T  P  T  C  T  G  C  *  H  S  W  D  V  G  N  V  P  N   : R  M  G  W  S  D  A  V  K  F  C  I  G  T  T  I  A  Y  C  K  A  R  A  E  P  C  F  I  S   : A  *  C  C  L  Q  G  N  C  K  A  E  K  G  K  G  *  G  K  G  V  T  C  P  G  *  K  T  N  T  H  G  S  H  Y  S  S  W  H  Y  C  C  K  Q  R  E  K  S :   C  R  G  *  G  C  G  P  *  W  K  E  N  S  P  W  D  I  T  L  C  H  *  D  S  Y  *  M  *  C  W  S  F  T  T  K  E  K  T  T   : D  T  R  N  I  G  P  C  G  C  C  G  E  I  Y  P  T  E  *  F  S  P  S  Q  N  Q  Q  A  G  H  F  V  S  G  Y  S  L  C  *   : G  H  N  C  Y  W  W  S  R  F  K  R  C  G  L  *  S  T  F  R  T  D  H  I  N  T  K  W  S  F  K  E   : G  Y  Q  C  *  I  C  G  *  G  *  T  S  G  L  W  F  S  R  *   : D  S  S  C  V  A  K  F  R  K  W  K  L  *  L  *  A  C  L  E  G  S  Y  C  R   : G  A  S  C  H  C  P  C  N  Q  *  L  F  C  Y  C  F  S  *  *  H  V  V  L  L  *  S  C  F  W  F  M  P  Y  T   : G  S  R  C  F  R  I  *  G  L  Y  F  C  S  F  P  P  *  W  S  D  P  W  N  R  D  F  R  V  F  G  Q  D  M  G  C  K  K  S   : G  K  C  C  K  I  *  W  P  C  W  V  C  N  C  H  F  L  F  R  K  W  L  F  L  S   : N  C  C  S  *  W  C  *  T  L  G  F  T  Q  I  E  E  L  Q  N  F  R  S  L  R  *  *  H  T  N  S  I  S :   G  I  *  P  *  W  K  L  S  C  L  R  R  L  R  Y  T  :  I  F   : E  F  I  K  S  P  A  S  R  L  N  G  I  P  S  K  P  S  P  T  Y  Q  A  Q  :  A  K  Q  H  V  *  N  L  V  Q  M  Q  H  I  *  L  S  D  L  W  T  V  I  *  E  Y  S  G  C  L  V  R  I  K  W  R  I  R  L  I  S  S  V  K  A  N  S  F  F  L  C  I  C  C  K  I  T  V  L  S  R  G  *  E  V  D  E  S  P  V  L  *  Y  V  L  L  V  F  A  K  F  W  G  W  A  S  *  *  T  *  P  Q  T  *  D  N  I  *  S  A  E  F  I  R  S  S  Q  N  Q  P  W  V  I  S  I  L  L  Y  H  S  C  V  T  I  L  P  F  L  E  A  K  L  *  M  D  S  D  Q  L  Q  Y  I  D  I  S  C  L  V  I  V  D  I  K  C  T  L  Y  A  I  I  F  F  H  V  Q  E  L  I  *  I  H  C  C  V  H  H  E  R  L  K  V  K  I  V  N  L  T  C  S  L  L  </second_frame>
            <third_frame>   I  H  L  P  R  S  H  S  A  S  A  P  F  V  L  L  K  P  *  L  Y  L  F  A  F  L  S  L  S  T  M  N  C  S   : I  S  G  E  V  P  E  D  P  V  V  S  K  K  S  G  L  L  F  E  K  R  L  I  E  R  H  I  S  :  D  Y  G  K  C  P  I  T  G  E  P  L  T  A  D  D  I  I  P  V  K  T  G  K  :  I  V  K  P  R  P  V  Q  A  A  S  I  P  G  M  L  G  M  F  Q  I  :  E  W  D  G  L  M  L  S  N  F  A  L  E  Q  Q  L  H  T  A  R  Q  E  L  S  H  A  L  Y  Q  :  H  D  A  A  C  R  V  I  A  R  L  K  K  E  R  D  E  A  R  G  L  L  A  Q  A  E  R  Q  I  P  M  A  A  T  T  A  V  G  T  T  A  V  S  N  G  K  R   : V  A  E  D  E  D  V  G  P  D  G  K  K  I  R  P  G  I  S  H  S  V  I  E  T  L  T  E  C  N  A  G  L  S  Q  Q  R  K  K  R  Q  :  I  P  A  T  L  A  P  V  D  A  V  A  R  Y  T  Q  L  N  S  F  P  L  H  K  T  N  K  P  G  I  L  S  L  D  I  H  Y  A  K  :  D  I  I  A  T  G  G  V  D  S  N  A  V  V  F  D  R  P  S  G  Q  I  I  S  T  L  S  G  H  S  K  R  :  V  T  S  V  K  F  A  A  E  G  E  L  V  V  S  G  S  A  D  K  :  T  V  R  V  W  Q  S  S  E  N  G  N  Y  D  C  R  H  V  L  K  D  H  T  A  E  :  V  Q  A  V  T  V  H  A  T  N  N  Y  F  V  T  A  S  L  D  S  T  W  C  F  Y  D  L  A  S  G  L  C  L  T  Q  :  V  A  D  A  S  E  S  E  G  Y  T  S  A  A  F  H  P  D  G  L  I  L  G  T  G  T  S  G  S  L  V  K  I  W  D  V  K  S  Q  :  A  N  V  A  K  F  D  G  H  V  G  S  V  T  A  I  S  F  S  E  N  G  Y  F  L  A  :  T  A  A  H  D  G  V  K  L  W  D  L  R  K  L  K  N  F  K  T  F  A  P  Y  D  D  N  T  P  T  Q  S   : V  E  F  D  H  S  G  S  Y  L  A  L  G  G  S  D  I  R :   F  L  :  S  L  S  S  R  Q  R  Q  G  *  M  E  F  H  Q  N  L  P  R  L  I  R  H  R :   Q  S  N  M  S  E  I  W  S  R  C  S  I  Y  S  C  R  I  Y  G  P  *  S  K  N  I  R  A  A  W  *  G  S  N  G  G  L  G  S  F  P  A  L  K  Q  T  A  F  S  F  A  S  A  A  R  S  Q  C  Y  L  E  G  R  R  S  M  R  V  L  F  F  N  M  Y  F  W  F  L  L  N  F  G  G  G  Q  A  N  R  H  N  H  K  L  E  I  T  S  E  V  Q  S  L  F  G  H  P  K  T  S  L  G  L  L  V  F  C  C  I  I  L  V  *  P  Y  C  P  S  W  K  Q  N  S  E  W  I  V  I  S  Y  S  T  S  I  F  H  V  *  L  *  S  I  *  N  A  L  C  T  L  L  F  F  F  M  F  K  S  *  S  E  F  I  V  V  Y  I  M  K  G  S  K  *  K  *  *  I  *  L  V  V  C  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84805" stop="84760"/>
                    <exon start="84632" stop="84547"/>
                    <exon start="83791" stop="83720"/>
                    <exon start="83601" stop="83539"/>
                    <exon start="83261" stop="83175"/>
                    <exon start="82271" stop="82130"/>
                    <exon start="82041" stop="81920"/>
                    <exon start="81736" stop="81620"/>
                    <exon start="80953" stop="80858"/>
                    <exon start="80720" stop="80661"/>
                    <exon start="80097" stop="80023"/>
                    <exon start="79172" stop="79068"/>
                    <exon start="78952" stop="78836"/>
                    <exon start="78728" stop="78651"/>
                    <exon start="78542" stop="78446"/>
                    <exon start="77934" stop="77883"/>
                    <exon start="77772" stop="77766"/>
                    <exon start="77350" stop="77321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1449</number_coding_nucleotides>
                  <number_encoded_amino_acids>483</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYLFAFLSLSTMNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPITGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARGLLAQAERQIPMAATTAVGTTAVSNGKRVAEDEDVGPDGKKIRPGISHSVIETLTECNAGLSQQRKKRQIPATLAPVDAVARYTQLNSFPLHKTNKPGILSLDIHYAKDIIATGGVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFAAEGELVVSGSADKTVRVWQSSENGNYDCRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLTQVADASESEGYTSAAFHPDGLILGTGTSGSLVKIWDVKSQANVAKFDGHVGSVTAISFSENGYFLATAAHDGVKLWDLRKLKNFKTFAPYDDNTPTQSVEFDHSGSYLALGGSDIRFLSLSSRQRQG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77097" stop="76825"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSNGGLGSFPALKQTAFSFASAARSQCYLEGRRSMRVLFFNMYFWFLLNFGGGQANRHNHKLEITSEVQSLFGHPKTSLGLLVFCCIILV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="105196" PGL_stop="108481"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105239" e_stop="105288"/>
            <exon e_start="105474" e_stop="105541"/>
            <exon e_start="105807" e_stop="105842"/>
            <exon e_start="106106" e_stop="107873"/>
            <exon e_start="107984" e_stop="108481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.978" acc_prob="0.000" e_score="0.897"/>
          <exon-intron don_prob="0.000" acc_prob="0.577" e_score="0.556"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="105239" e_stop="105288" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="105289" i_stop="105473" i_length="185"/>
          </intron>
          <exon e_serial="2" e_score="0.897">
            <gDNA_exon_boundary e_start="105474" e_stop="105541" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105542" i_stop="105806" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="0.556">
            <gDNA_exon_boundary e_start="105807" e_stop="105842" e_length="36"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.577">
            <gDNA_intron_boundary i_start="105843" i_stop="106105" i_length="263"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="106106" e_stop="107873" e_length="1768"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.892">
            <gDNA_exon_boundary e_start="107984" e_stop="108481" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105239" stop="105288"/>
              <exon start="105474" stop="105541"/>
              <exon start="105807" stop="105842"/>
              <exon start="106106" stop="106608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106141" stop="106647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106460" stop="107291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106830" stop="107725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106830" stop="107323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107248" stop="107873"/>
              <exon start="107984" stop="108262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107370" stop="107873"/>
              <exon start="107984" stop="108122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107370" stop="107873"/>
              <exon start="107984" stop="108103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107371" stop="107873"/>
              <exon start="107984" stop="108152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107762" stop="107873"/>
              <exon start="107984" stop="108481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTG : GGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG : GGAAGTTCACCACAAGTAGATTTCTGTTTTTGTAAG : TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG : GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTTAGCTGGTAGAGTATTAGATAGGAGATTCGTTTGTTAGCTCACATTATCATTTTGTTAGTGTAATGAATGATACACTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTAATGAAAGTCGAAACATATTGATTCTTGAGTGGTTTGTTGATCCTTTGATCTCTAGTGCAACTTTCAGGCAT</gDNA_template>
            <first_frame> V  I  L  L  L  E  V  K  V  V  D  E  V  S  S  M  W :   G  L  K  E  L  K  A  *  S  A  R  *  I  *  S  G  V  S  Y  F  F  G   : G  K  F  T  T  S  R  F  L  F  L  *   : V  L  V  D  F  G  L  F  V  *  P  C  L  Y  C  G  R  *  R  K  K  V  H  F  I  C  F  L  M  F  N  H  L  G  G  G  I  W  K  T  E  T  W  T  R  M  N  L  I  K  K  V  Y  C  S  L  *  T  R  K  N  K  Q  R  R  I  V  V  C  R  Q  D  *  *  K  S  *  N  H  S  T  Y  V  D  *  K  T  R  I  L  L  E  I  A  L  R  N  C  S  F  I  I  L  L  A  Y  K  I  S  F  R  S  I  *  *  V  L  T  K  D  T  S  F  A  A  L  N  W  Y  T  Y  T  P  H  V  T  S  L  Q  R  C  K  L  Y  Q  R  V  Q  V  Q  E  R  L  E  M  K  I  S  T  L  M  V  I  W  R  P  N  V  L  K  L  W  G  L  S  Q  V  M  S  L  T  P  P  R  S  G  F  L  V  L  *  L  V  V  R  V  C  *  T  F  *  R  V  P  Y  L  I  N  L  D  L  L  T  V  L  L  I  L  E  R  K  I  *  M  T  V  K  K  E  V  F  L  I  S  *  A  L  P  V  V  L  V  S  V  Q  H  R  S  Y  R  R  R  *  Q  I  M  D  L  S  M  Y  T  E  G  F  F  L  Y  L  V  Q  L  R  H  A  Q  I  N  H  V  F  Q  Q  L  P  L  F  L  K  E  C  S  R  G  D  G  K  M  V  Y  H  I  M  S  F  P  *  M  V  K  R  K  F  M  *  L  I  C  W  R  L  T  H  L  M  I  S  F  S  I  M  F  T  H  F  I  Q  D  K  K  A  K  R  N  A  P  S  L  Q  G  N  H  N  L  *  V  K  *  L  C  Q  L  Q  *  H  S  A  Q  P  S  W  R  L  W  R  R  D  L  L  C  L  V  P  W  I  N  I  W  M  R  Y  K  Q  V  I  S  S  G  R  T  K  S  W  Q  R  K  *  Q  M  C  S  E  L  V  S  L  I  S  R  E  A  Y  P  S  S  G  E  Q  A  P  F  L  K  M  L  R  G  R  H  P  *  I  C  M  M  I  I  I  H  A  A  M  L  F  *  I  S  R  F  R  Q  I  L  S  W  L  P  L  L  P  E  I  L  L  M  T  A  P  R  R  Q  R  R  V  A  G  V  *  S  F  S  R  N  L  R  L  E  V  K  M  H  L  L  R  Y  R  W  N  V  V  H  V  A  P  V  I  A  Q  Q  A  Q  M  L  *  F  Q  V  V  F  M  V  D  L  E  A  D  M  L  G  R  Q  A  C  W  S  G  G  A  L  V  G  T  V  I  V  E  A  G  I  S  G  A  P  S  Q  F  L  K  L  G  M  K  L  H  H  K  L  H  P  G  T  V  K  L  L  I  S  I  Y  R :   V  *  N  K  V  H  Q  S  *  K  C  R  I  F  M  M  V  C  I  T  S  I  F  I  R  L  Y  Q  L  C  S  L  S  P  *  L  L  L  S  F  I  D  I  V  L  S  Y  D  R  N  C  T  G  S  E  V  R  *  H  Q  V  W  Y  L  L  L  *  L  S  F  F  K  R  S  Q  T  N  R  P  L  E  M  V  Q  R  Y  N  I  *  L  S  L  L  A  G  R  V  L  D  R  R  F  V  C  *  L  T  L  S  F  C  *  C  N  E  *  Y  T  L  E  A  A  V  S  V  Q  I  V  Y  W  M  G  G  H  P  F  V  P  L  I  K  L  M  K  V  E  T  Y  *  F  L  S  G  L  L  I  L  *  S  L  V  Q  L  S  G   </first_frame>
            <second_frame>  L  F  C  C  W  R  *  K  W  W  M  R  F  L  P  C   : G  D  *  K  S  L  K  L  D  L  Q  G  E  F  E  V  G  F  H  I  F  L  E  :  G  S  S  P  Q  V  D  F  C  F  C  K  :  C  W  W  I  S  V  S  L  Y  N  R  V  Y  T  V  E  G  E  G  R  K  F  I  L  S  V  F  *  C  L  I  T  L  E  V  E  Y  G  K  Q  K  H  G  Q  G  *  T  *  *  R  R  F  I  A  A  C  E  Q  G  R  T  S  R  G  E  *  L  F  V  D  K  I  N  R  R  V  R  T  T  A  P  T  *  I  R  K  P  A  F  Y  W  K  L  R  S  E  I  A  L  S  *  F  S  W  L  T  K  *  A  S  E  A  Y  N  K  F  *  R  K  I  L  P  S  L  P  *  I  G  T  H  T  L  H  M  *  L  L  F  K  D  A  N  Y  I  K  E  F  R  F  K  R  G  *  K  *  K  S  P  H  *  W  *  S  G  D  R  M  S  S  N  C  G  D  *  V  K  L  C  P  *  L  L  R  G  V  D  S  W  C  Y  N  W  *  *  E  Y  A  E  H  F  K  E  S  L  T  *  S  I  W  I  C  *  L  Y  C  *  F  W  K  G  K  Y  K  *  Q  *  R  R  K  F  F  *  F  H  E  L  S  R  W  F  *  C  Q  F  S  T  E  A  T  E  G  D  D  R  S  W  I  *  A  C  T  Q  K  G  S  F  C  I  *  Y  S  F  D  M  L  R  S  I  M  S  F  S  S  C  P  Y  F  S  R  N  V  P  E  E  M  E  K  W  F  T  T  L  C  L  F  H  R  W  *  K  G  S  L  C  S  *  S  A  G  D  *  L  T  *  *  *  V  S  R  L  C  L  H  I  S  F  K  T  R  K  Q  K  G  M  R  L  L  C  K  G  I  T  T  C  R  *  N  D  C  V  N  F  S  D  T  Q  P  N  Q  V  G  D  Y  G  D  A  I  C  C  V  W  F  H  G  S  I  Y  G  *  D  T  N  K  S  Y  P  Q  E  E  Q  K  V  G  K  E  S  N  R  C  V  Q  N  *  S  V  L  *  A  E  K  L  I  Q  V  R  G  N  K  R  H  S  *  R  C  F  V  D  A  I  H  R  Y  V  *  *  L  L  F  M  R  Q  C  S  F  R  S  A  D  S  A  K  F  *  A  G  C  R  C  Y  Q  R  S  S  *  *  Q  L  Q  G  G  R  E  G  W  L  G  Y  E  V  S  Q  E  I  S  D  W  K  *  K  C  T  S  *  D  I  G  G  M  S  F  T  W  H  Q  *  L  L  N  K  H  R  C  Y  N  S  K  W  F  S  W  W  T  *  K  Q  T  C  W  A  V  K  P  V  G  A  V  E  L  W  W  A  L  *  L  W  R  L  G  S  R  V  P  P  H  S  S  *  N  W  E  *  S  F  I  T  N  Y  I  R  G  L  S  N  F  *  S  L  Y  T   : G  F  E  T  K  C  T  S  H  E  N  V  E  Y  S  *  W  F  V  L  H  P  F  S  F  D  S  I  S  F  A  V  F  R  H  S  C  C  F  H  S  *  T  *  S  F  P  T  T  E  T  V  Q  E  V  K  *  D  D  T  K  Y  G  I  C  C  Y  S  S  L  S  L  K  E  V  R  Q  I  D  H  *  K  W  F  K  D  I  T  Y  D  C  L  S  *  L  V  E  Y  *  I  G  D  S  F  V  S  S  H  Y  H  F  V  S  V  M  N  D  T  L  *  K  Q  R  S  V  Y  K  S  S  I  G  W  G  D  I  H  L  Y  R  *  L  S  *  *  K  S  K  H  I  D  S  *  V  V  C  *  S  F  D  L  *  C  N  F  Q  A  </second_frame>
            <third_frame>   Y  F  V  V  G  G  E  S  G  G  *  G  F  F  H  V  :  G  I  E  R  A  *  S  L  I  C  K  V  N  L  K  W  G  F  I  F  F  W  R :   E  V  H  H  K  *  I  S  V  F  V  S :   A  G  G  F  R  S  L  C  I  T  V  F  I  L  W  K  V  K  E  E  S  S  F  Y  L  F  S  N  V  *  S  P  W  R  W  N  M  E  N  R  N  M  D  K  D  E  P  N  K  E  G  L  L  Q  L  V  N  K  E  E  Q  A  E  E  N  S  C  L  S  T  R  L  I  E  E  L  E  P  Q  H  L  R  R  L  E  N  P  H  F  T  G  N  C  A  Q  K  L  L  F  H  N  S  L  G  L  Q  N  K  L  P  K  H  I  I  S  F  D  E  R  Y  F  L  R  C  L  E  L  V  H  I  H  S  T  C  N  F  S  S  K  M  Q  I  I  S  K  S  S  G  S  R  E  V  R  N  E  N  L  H  T  N  G  N  L  A  T  E  C  P  Q  T  V  G  I  E  S  S  Y  V  P  D  S  S  A  E  W  I  L  G  A  I  T  G  S  K  S  M  L  N  I  L  K  S  P  L  L  N  Q  F  G  S  V  N  C  T  V  D  S  G  K  E  N  I  N  D  S  E  E  G  S  F  S  D  F  M  S  S  P  G  G  F  S  V  S  S  A  Q  K  L  Q  K  E  M  T  D  H  G  S  E  H  V  H  R  R  V  L  S  V  S  S  T  A  S  T  C  S  D  Q  S  C  L  S  A  A  A  P  I  S  Q  G  M  F  Q  R  R  W  K  N  G  L  P  H  Y  V  F  S  I  D  G  K  K  E  V  Y  V  A  D  L  L  E  I  D  S  P  D  D  K  F  L  D  Y  V  Y  T  F  H  S  R  Q  E  S  K  K  E  C  A  F  S  A  R  E  S  Q  L  V  G  K  M  T  V  S  T  S  V  T  L  S  P  T  K  L  E  I  M  E  T  R  F  V  V  F  G  S  M  D  Q  Y  M  D  E  I  Q  T  S  H  I  L  R  K  N  K  K  L  A  K  K  V  T  D  V  F  R  T  S  Q  S  Y  K  Q  R  S  L  S  K  F  G  G  T  S  A  I  L  E  D  A  S  W  T  P  S  I  D  M  Y  D  D  Y  Y  S  C  G  N  A  L  L  D  Q  Q  I  P  P  N  F  E  L  A  A  V  V  T  R  D  P  L  N  D  S  S  K  E  A  E  K  G  G  W  G  M  K  F  L  K  K  S  P  T  G  S  K  N  A  P  P  E  I  S  V  E  C  R  S  R  G  T  S  D  C  S  T  S  T  D  V  I  I  P  S  G  F  H  G  G  P  R  S  R  H  A  G  P  S  S  L  L  E  R  W  S  S  G  G  H  C  D  C  G  G  W  D  L  G  C  P  L  T  V  L  K  T  G  N  E  A  S  S  Q  T  T  S  G  D  C  Q  T  F  D  L  Y  I  Q  :  G  L  K  Q  S  A  P  V  M  K  M  S  N  I  H  D  G  L  Y  Y  I  H  F  H  S  T  L  S  A  L  Q  S  F  A  I  A  A  A  F  I  H  R  H  S  P  F  L  R  P  K  L  Y  R  K  *  S  K  M  T  P  S  M  V  S  V  V  I  A  L  F  L  *  K  K  S  D  K  S  T  I  R  N  G  S  K  I  *  H  M  I  V  S  L  S  W  *  S  I  R  *  E  I  R  L  L  A  H  I  I  I  L  L  V  *  *  M  I  H  F  R  S  S  G  Q  C  T  N  R  L  L  D  G  G  T  S  I  C  T  V  D  *  V  N  E  S  R  N  I  L  I  L  E  W  F  V  D  P  L  I  S  S  A  T  F  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106197" stop="107873"/>
                    <exon start="107984" stop="108148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1839</number_coding_nucleotides>
                  <number_encoded_amino_acids>613</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPWRWNMENRNMDKDEPNKEGLLQLVNKEEQAEENSCLSTRLIEELEPQHLRRLENPHFTGNCAQKLLFHNSLGLQNKLPKHIISFDERYFLRCLELVHIHSTCNFSSKMQIISKSSGSREVRNENLHTNGNLATECPQTVGIESSYVPDSSAEWILGAITGSKSMLNILKSPLLNQFGSVNCTVDSGKENINDSEEGSFSDFMSSPGGFSVSSAQKLQKEMTDHGSEHVHRRVLSVSSTASTCSDQSCLSAAAPISQGMFQRRWKNGLPHYVFSIDGKKEVYVADLLEIDSPDDKFLDYVYTFHSRQESKKECAFSARESQLVGKMTVSTSVTLSPTKLEIMETRFVVFGSMDQYMDEIQTSHILRKNKKLAKKVTDVFRTSQSYKQRSLSKFGGTSAILEDASWTPSIDMYDDYYSCGNALLDQQIPPNFELAAVVTRDPLNDSSKEAEKGGWGMKFLKKSPTGSKNAPPEISVECRSRGTSDCSTSTDVIIPSGFHGGPRSRHAGPSSLLERWSSGGHCDCGGWDLGCPLTVLKTGNEASSQTTSGDCQTFDLYIQGLKQSAPVMKMSNIHDGLYYIHFHSTLSALQSFAIAAAFIHRHSPFLRPKLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105196" e_stop="105541"/>
            <exon e_start="106106" e_stop="107873"/>
            <exon e_start="107984" e_stop="108481"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.577" e_score="0.986"/>
          <exon-intron don_prob="0.963" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="0.892"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="105196" e_stop="105541" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.577">
            <gDNA_intron_boundary i_start="105542" i_stop="106105" i_length="564"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="106106" e_stop="107873" e_length="1768"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107874" i_stop="107983" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.892">
            <gDNA_exon_boundary e_start="107984" e_stop="108481" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105196" stop="105541"/>
              <exon start="106106" stop="106363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106141" stop="106647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106147" stop="106783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106460" stop="107291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106830" stop="107725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106830" stop="107323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107248" stop="107873"/>
              <exon start="107984" stop="108262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107370" stop="107873"/>
              <exon start="107984" stop="108122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107370" stop="107873"/>
              <exon start="107984" stop="108103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107371" stop="107873"/>
              <exon start="107984" stop="108152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107762" stop="107873"/>
              <exon start="107984" stop="108481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGGTATTCTTCTTCTAGAATCAAGATTCGTCTAAAAACAGTTATTTTGTTGTTGGAGGTGAAAGTGGTGGATGAGGTTTCTTCCATGTGGTATACTTTTGTAGAAGTAATTTTTATTTCTTTAATAGCCAAAGTTTCTTGCTTTTCTTTCTCTACTTTGTTTTAAAATAGACTTTTTGAAGGACTAATTGTATATCTTATCTTTGTTTAGTGGGGTTGTCTTGAAATTGGCTAACATTAAGTTTATCTTTATGTGGTGTTTGTTGTTTCTGAAGGGGATTGAAAGAGCTTAAAGCTTGATCTGCAAGGTGAATTTGAAGTGGGGTTTCATATTTTTTTGGAG : TGCTGGTGGATTTCGGTCTCTTTGTATAACCGTGTTTATACTGTGGAAGGTGAAGGAAGAAAGTTCATTTTATCTGTTTTCTAATGTTTAATCACCTTGGAGGTGGAATATGGAAAACAGAAACATGGACAAGGATGAACCTAATAAAGAAGGTTTATTGCAGCTTGTGAACAAGGAAGAACAAGCAGAGGAGAATAGTTGTTTGTCGACAAGATTAATAGAAGAGTTAGAACCACAGCACCTACGTAGATTAGAAAACCCGCATTTTACTGGAAATTGCGCTCAGAAATTGCTCTTTCATAATTCTCTTGGCTTACAAAATAAGCTTCCGAAGCATATAATAAGTTTTGACGAAAGATACTTCCTTCGCTGCCTTGAATTGGTACACATACACTCCACATGTAACTTCTCTTCAAAGATGCAAATTATATCAAAGAGTTCAGGTTCAAGAGAGGTTAGAAATGAAAATCTCCACACTAATGGTAATCTGGCGACCGAATGTCCTCAAACTGTGGGGATTGAGTCAAGTTATGTCCCTGACTCCTCCGCGGAGTGGATTCTTGGTGCTATAACTGGTAGTAAGAGTATGCTGAACATTTTAAAGAGTCCCTTACTTAATCAATTTGGATCTGTTAACTGTACTGTTGATTCTGGAAAGGAAAATATAAATGACAGTGAAGAAGGAAGTTTTTCTGATTTCATGAGCTCTCCCGGTGGTTTTAGTGTCAGTTCAGCACAGAAGCTACAGAAGGAGATGACAGATCATGGATCTGAGCATGTACACAGAAGGGTTCTTTCTGTATCTAGTACAGCTTCGACATGCTCAGATCAATCATGTCTTTCAGCAGCTGCCCCTATTTCTCAAGGAATGTTCCAGAGGAGATGGAAAAATGGTTTACCACATTATGTCTTTTCCATAGATGGTAAAAAGGAAGTTTATGTAGCTGATCTGCTGGAGATTGACTCACCTGATGATAAGTTTCTCGATTATGTTTACACATTTCATTCAAGACAAGAAAGCAAAAAGGAATGCGCCTTCTCTGCAAGGGAATCACAACTTGTAGGTAAAATGACTGTGTCAACTTCAGTGACACTCAGCCCAACCAAGTTGGAGATTATGGAGACGCGATTTGTTGTGTTTGGTTCCATGGATCAATATATGGATGAGATACAAACAAGTCATATCCTCAGGAAGAACAAAAAGTTGGCAAAGAAAGTAACAGATGTGTTCAGAACTAGTCAGTCTTATAAGCAGAGAAGCTTATCCAAGTTCGGGGGAACAAGCGCCATTCTTGAAGATGCTTCGTGGACGCCATCCATAGATATGTATGATGATTATTATTCATGCGGCAATGCTCTTTTAGATCAGCAGATTCCGCCAAATTTTGAGCTGGCTGCCGTTGTTACCAGAGATCCTCTTAATGACAGCTCCAAGGAGGCAGAGAAGGGTGGCTGGGGTATGAAGTTTCTCAAGAAATCTCCGACTGGAAGTAAAAATGCACCTCCTGAGATATCGGTGGAATGTCGTTCACGTGGCACCAGTGATTGCTCAACAAGCACAGATGTTATAATTCCAAGTGGTTTTCATGGTGGACCTAGAAGCAGACATGCTGGGCCGTCAAGCCTGTTGGAGCGGTGGAGCTCTGGTGGGCACTGTGATTGTGGAGGCTGGGATCTCGGGTGCCCCCTCACAGTTCTTAAAACTGGGAATGAAGCTTCATCACAAACTACATCCGGGGACTGTCAAACTTTTGATCTCTATATACAG : GGTTTGAAACAAAGTGCACCAGTCATGAAAATGTCGAATATTCATGATGGTTTGTATTACATCCATTTTCATTCGACTCTATCAGCTTTGCAGTCTTTCGCCATAGCTGCTGCTTTCATTCATAGACATAGTCCTTTCCTACGACCGAAACTGTACAGGAAGTGAAGTAAGATGACACCAAGTATGGTATCTGTTGTTATAGCTCTCTTTCTTTAAAAGAAGTCAGACAAATCGACCATTAGAAATGGTTCAAAGATATAACATATGATTGTCTCTCTTAGCTGGTAGAGTATTAGATAGGAGATTCGTTTGTTAGCTCACATTATCATTTTGTTAGTGTAATGAATGATACACTTTAGAAGCAGCGGTCAGTGTACAAATCGTCTATTGGATGGGGGGACATCCATTTGTACCGTTGATTAAGTTAATGAAAGTCGAAACATATTGATTCTTGAGTGGTTTGTTGATCCTTTGATCTCTAGTGCAACTTTCAGGCAT</gDNA_template>
            <first_frame> G  L  V  F  F  F  *  N  Q  D  S  S  K  N  S  Y  F  V  V  G  G  E  S  G  G  *  G  F  F  H  V  V  Y  F  C  R  S  N  F  Y  F  F  N  S  Q  S  F  L  L  F  F  L  Y  F  V  L  K  *  T  F  *  R  T  N  C  I  S  Y  L  C  L  V  G  L  S  *  N  W  L  T  L  S  L  S  L  C  G  V  C  C  F  *  R  G  L  K  E  L  K  A  *  S  A  R  *  I  *  S  G  V  S  Y  F  F  G   : V  L  V  D  F  G  L  F  V  *  P  C  L  Y  C  G  R  *  R  K  K  V  H  F  I  C  F  L  M  F  N  H  L  G  G  G  I  W  K  T  E  T  W  T  R  M  N  L  I  K  K  V  Y  C  S  L  *  T  R  K  N  K  Q  R  R  I  V  V  C  R  Q  D  *  *  K  S  *  N  H  S  T  Y  V  D  *  K  T  R  I  L  L  E  I  A  L  R  N  C  S  F  I  I  L  L  A  Y  K  I  S  F  R  S  I  *  *  V  L  T  K  D  T  S  F  A  A  L  N  W  Y  T  Y  T  P  H  V  T  S  L  Q  R  C  K  L  Y  Q  R  V  Q  V  Q  E  R  L  E  M  K  I  S  T  L  M  V  I  W  R  P  N  V  L  K  L  W  G  L  S  Q  V  M  S  L  T  P  P  R  S  G  F  L  V  L  *  L  V  V  R  V  C  *  T  F  *  R  V  P  Y  L  I  N  L  D  L  L  T  V  L  L  I  L  E  R  K  I  *  M  T  V  K  K  E  V  F  L  I  S  *  A  L  P  V  V  L  V  S  V  Q  H  R  S  Y  R  R  R  *  Q  I  M  D  L  S  M  Y  T  E  G  F  F  L  Y  L  V  Q  L  R  H  A  Q  I  N  H  V  F  Q  Q  L  P  L  F  L  K  E  C  S  R  G  D  G  K  M  V  Y  H  I  M  S  F  P  *  M  V  K  R  K  F  M  *  L  I  C  W  R  L  T  H  L  M  I  S  F  S  I  M  F  T  H  F  I  Q  D  K  K  A  K  R  N  A  P  S  L  Q  G  N  H  N  L  *  V  K  *  L  C  Q  L  Q  *  H  S  A  Q  P  S  W  R  L  W  R  R  D  L  L  C  L  V  P  W  I  N  I  W  M  R  Y  K  Q  V  I  S  S  G  R  T  K  S  W  Q  R  K  *  Q  M  C  S  E  L  V  S  L  I  S  R  E  A  Y  P  S  S  G  E  Q  A  P  F  L  K  M  L  R  G  R  H  P  *  I  C  M  M  I  I  I  H  A  A  M  L  F  *  I  S  R  F  R  Q  I  L  S  W  L  P  L  L  P  E  I  L  L  M  T  A  P  R  R  Q  R  R  V  A  G  V  *  S  F  S  R  N  L  R  L  E  V  K  M  H  L  L  R  Y  R  W  N  V  V  H  V  A  P  V  I  A  Q  Q  A  Q  M  L  *  F  Q  V  V  F  M  V  D  L  E  A  D  M  L  G  R  Q  A  C  W  S  G  G  A  L  V  G  T  V  I  V  E  A  G  I  S  G  A  P  S  Q  F  L  K  L  G  M  K  L  H  H  K  L  H  P  G  T  V  K  L  L  I  S  I  Y  R :   V  *  N  K  V  H  Q  S  *  K  C  R  I  F  M  M  V  C  I  T  S  I  F  I  R  L  Y  Q  L  C  S  L  S  P  *  L  L  L  S  F  I  D  I  V  L  S  Y  D  R  N  C  T  G  S  E  V  R  *  H  Q  V  W  Y  L  L  L  *  L  S  F  F  K  R  S  Q  T  N  R  P  L  E  M  V  Q  R  Y  N  I  *  L  S  L  L  A  G  R  V  L  D  R  R  F  V  C  *  L  T  L  S  F  C  *  C  N  E  *  Y  T  L  E  A  A  V  S  V  Q  I  V  Y  W  M  G  G  H  P  F  V  P  L  I  K  L  M  K  V  E  T  Y  *  F  L  S  G  L  L  I  L  *  S  L  V  Q  L  S  G   </first_frame>
            <second_frame>  V  W  Y  S  S  S  R  I  K  I  R  L  K  T  V  I  L  L  L  E  V  K  V  V  D  E  V  S  S  M  W  Y  T  F  V  E  V  I  F  I  S  L  I  A  K  V  S  C  F  S  F  S  T  L  F  *  N  R  L  F  E  G  L  I  V  Y  L  I  F  V  *  W  G  C  L  E  I  G  *  H  *  V  Y  L  Y  V  V  F  V  V  S  E  G  D  *  K  S  L  K  L  D  L  Q  G  E  F  E  V  G  F  H  I  F  L  E  :  C  W  W  I  S  V  S  L  Y  N  R  V  Y  T  V  E  G  E  G  R  K  F  I  L  S  V  F  *  C  L  I  T  L  E  V  E  Y  G  K  Q  K  H  G  Q  G  *  T  *  *  R  R  F  I  A  A  C  E  Q  G  R  T  S  R  G  E  *  L  F  V  D  K  I  N  R  R  V  R  T  T  A  P  T  *  I  R  K  P  A  F  Y  W  K  L  R  S  E  I  A  L  S  *  F  S  W  L  T  K  *  A  S  E  A  Y  N  K  F  *  R  K  I  L  P  S  L  P  *  I  G  T  H  T  L  H  M  *  L  L  F  K  D  A  N  Y  I  K  E  F  R  F  K  R  G  *  K  *  K  S  P  H  *  W  *  S  G  D  R  M  S  S  N  C  G  D  *  V  K  L  C  P  *  L  L  R  G  V  D  S  W  C  Y  N  W  *  *  E  Y  A  E  H  F  K  E  S  L  T  *  S  I  W  I  C  *  L  Y  C  *  F  W  K  G  K  Y  K  *  Q  *  R  R  K  F  F  *  F  H  E  L  S  R  W  F  *  C  Q  F  S  T  E  A  T  E  G  D  D  R  S  W  I  *  A  C  T  Q  K  G  S  F  C  I  *  Y  S  F  D  M  L  R  S  I  M  S  F  S  S  C  P  Y  F  S  R  N  V  P  E  E  M  E  K  W  F  T  T  L  C  L  F  H  R  W  *  K  G  S  L  C  S  *  S  A  G  D  *  L  T  *  *  *  V  S  R  L  C  L  H  I  S  F  K  T  R  K  Q  K  G  M  R  L  L  C  K  G  I  T  T  C  R  *  N  D  C  V  N  F  S  D  T  Q  P  N  Q  V  G  D  Y  G  D  A  I  C  C  V  W  F  H  G  S  I  Y  G  *  D  T  N  K  S  Y  P  Q  E  E  Q  K  V  G  K  E  S  N  R  C  V  Q  N  *  S  V  L  *  A  E  K  L  I  Q  V  R  G  N  K  R  H  S  *  R  C  F  V  D  A  I  H  R  Y  V  *  *  L  L  F  M  R  Q  C  S  F  R  S  A  D  S  A  K  F  *  A  G  C  R  C  Y  Q  R  S  S  *  *  Q  L  Q  G  G  R  E  G  W  L  G  Y  E  V  S  Q  E  I  S  D  W  K  *  K  C  T  S  *  D  I  G  G  M  S  F  T  W  H  Q  *  L  L  N  K  H  R  C  Y  N  S  K  W  F  S  W  W  T  *  K  Q  T  C  W  A  V  K  P  V  G  A  V  E  L  W  W  A  L  *  L  W  R  L  G  S  R  V  P  P  H  S  S  *  N  W  E  *  S  F  I  T  N  Y  I  R  G  L  S  N  F  *  S  L  Y  T   : G  F  E  T  K  C  T  S  H  E  N  V  E  Y  S  *  W  F  V  L  H  P  F  S  F  D  S  I  S  F  A  V  F  R  H  S  C  C  F  H  S  *  T  *  S  F  P  T  T  E  T  V  Q  E  V  K  *  D  D  T  K  Y  G  I  C  C  Y  S  S  L  S  L  K  E  V  R  Q  I  D  H  *  K  W  F  K  D  I  T  Y  D  C  L  S  *  L  V  E  Y  *  I  G  D  S  F  V  S  S  H  Y  H  F  V  S  V  M  N  D  T  L  *  K  Q  R  S  V  Y  K  S  S  I  G  W  G  D  I  H  L  Y  R  *  L  S  *  *  K  S  K  H  I  D  S  *  V  V  C  *  S  F  D  L  *  C  N  F  Q  A  </second_frame>
            <third_frame>   F  G  I  L  L  L  E  S  R  F  V  *  K  Q  L  F  C  C  W  R  *  K  W  W  M  R  F  L  P  C  G  I  L  L  *  K  *  F  L  F  L  *  *  P  K  F  L  A  F  L  S  L  L  C  F  K  I  D  F  L  K  D  *  L  Y  I  L  S  L  F  S  G  V  V  L  K  L  A  N  I  K  F  I  F  M  W  C  L  L  F  L  K  G  I  E  R  A  *  S  L  I  C  K  V  N  L  K  W  G  F  I  F  F  W  S :   A  G  G  F  R  S  L  C  I  T  V  F  I  L  W  K  V  K  E  E  S  S  F  Y  L  F  S  N  V  *  S  P  W  R  W  N  M  E  N  R  N  M  D  K  D  E  P  N  K  E  G  L  L  Q  L  V  N  K  E  E  Q  A  E  E  N  S  C  L  S  T  R  L  I  E  E  L  E  P  Q  H  L  R  R  L  E  N  P  H  F  T  G  N  C  A  Q  K  L  L  F  H  N  S  L  G  L  Q  N  K  L  P  K  H  I  I  S  F  D  E  R  Y  F  L  R  C  L  E  L  V  H  I  H  S  T  C  N  F  S  S  K  M  Q  I  I  S  K  S  S  G  S  R  E  V  R  N  E  N  L  H  T  N  G  N  L  A  T  E  C  P  Q  T  V  G  I  E  S  S  Y  V  P  D  S  S  A  E  W  I  L  G  A  I  T  G  S  K  S  M  L  N  I  L  K  S  P  L  L  N  Q  F  G  S  V  N  C  T  V  D  S  G  K  E  N  I  N  D  S  E  E  G  S  F  S  D  F  M  S  S  P  G  G  F  S  V  S  S  A  Q  K  L  Q  K  E  M  T  D  H  G  S  E  H  V  H  R  R  V  L  S  V  S  S  T  A  S  T  C  S  D  Q  S  C  L  S  A  A  A  P  I  S  Q  G  M  F  Q  R  R  W  K  N  G  L  P  H  Y  V  F  S  I  D  G  K  K  E  V  Y  V  A  D  L  L  E  I  D  S  P  D  D  K  F  L  D  Y  V  Y  T  F  H  S  R  Q  E  S  K  K  E  C  A  F  S  A  R  E  S  Q  L  V  G  K  M  T  V  S  T  S  V  T  L  S  P  T  K  L  E  I  M  E  T  R  F  V  V  F  G  S  M  D  Q  Y  M  D  E  I  Q  T  S  H  I  L  R  K  N  K  K  L  A  K  K  V  T  D  V  F  R  T  S  Q  S  Y  K  Q  R  S  L  S  K  F  G  G  T  S  A  I  L  E  D  A  S  W  T  P  S  I  D  M  Y  D  D  Y  Y  S  C  G  N  A  L  L  D  Q  Q  I  P  P  N  F  E  L  A  A  V  V  T  R  D  P  L  N  D  S  S  K  E  A  E  K  G  G  W  G  M  K  F  L  K  K  S  P  T  G  S  K  N  A  P  P  E  I  S  V  E  C  R  S  R  G  T  S  D  C  S  T  S  T  D  V  I  I  P  S  G  F  H  G  G  P  R  S  R  H  A  G  P  S  S  L  L  E  R  W  S  S  G  G  H  C  D  C  G  G  W  D  L  G  C  P  L  T  V  L  K  T  G  N  E  A  S  S  Q  T  T  S  G  D  C  Q  T  F  D  L  Y  I  Q  :  G  L  K  Q  S  A  P  V  M  K  M  S  N  I  H  D  G  L  Y  Y  I  H  F  H  S  T  L  S  A  L  Q  S  F  A  I  A  A  A  F  I  H  R  H  S  P  F  L  R  P  K  L  Y  R  K  *  S  K  M  T  P  S  M  V  S  V  V  I  A  L  F  L  *  K  K  S  D  K  S  T  I  R  N  G  S  K  I  *  H  M  I  V  S  L  S  W  *  S  I  R  *  E  I  R  L  L  A  H  I  I  I  L  L  V  *  *  M  I  H  F  R  S  S  G  Q  C  T  N  R  L  L  D  G  G  T  S  I  C  T  V  D  *  V  N  E  S  R  N  I  L  I  L  E  W  F  V  D  P  L  I  S  S  A  T  F  R  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106197" stop="107873"/>
                    <exon start="107984" stop="108148"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1839</number_coding_nucleotides>
                  <number_encoded_amino_acids>613</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPWRWNMENRNMDKDEPNKEGLLQLVNKEEQAEENSCLSTRLIEELEPQHLRRLENPHFTGNCAQKLLFHNSLGLQNKLPKHIISFDERYFLRCLELVHIHSTCNFSSKMQIISKSSGSREVRNENLHTNGNLATECPQTVGIESSYVPDSSAEWILGAITGSKSMLNILKSPLLNQFGSVNCTVDSGKENINDSEEGSFSDFMSSPGGFSVSSAQKLQKEMTDHGSEHVHRRVLSVSSTASTCSDQSCLSAAAPISQGMFQRRWKNGLPHYVFSIDGKKEVYVADLLEIDSPDDKFLDYVYTFHSRQESKKECAFSARESQLVGKMTVSTSVTLSPTKLEIMETRFVVFGSMDQYMDEIQTSHILRKNKKLAKKVTDVFRTSQSYKQRSLSKFGGTSAILEDASWTPSIDMYDDYYSCGNALLDQQIPPNFELAAVVTRDPLNDSSKEAEKGGWGMKFLKKSPTGSKNAPPEISVECRSRGTSDCSTSTDVIIPSGFHGGPRSRHAGPSSLLERWSSGGHCDCGGWDLGCPLTVLKTGNEASSQTTSGDCQTFDLYIQGLKQSAPVMKMSNIHDGLYYIHFHSTLSALQSFAIAAAFIHRHSPFLRPKLYRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="121942" PGL_stop="124531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121942" e_stop="121982"/>
            <exon e_start="122074" e_stop="122358"/>
            <exon e_start="124078" e_stop="124119"/>
            <exon e_start="124286" e_stop="124531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121942" e_stop="121982" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121983" i_stop="122073" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122074" e_stop="122358" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="122359" i_stop="124077" i_length="1719"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124078" e_stop="124119" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="124120" i_stop="124285" i_length="166"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="124286" e_stop="124531" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121942" stop="121982"/>
              <exon start="122074" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121965" stop="121982"/>
              <exon start="122074" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121972" stop="121982"/>
              <exon start="122074" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121975" stop="121982"/>
              <exon start="122074" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121977" stop="121982"/>
              <exon start="122074" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122074" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122076" stop="122358"/>
              <exon start="124078" stop="124099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122080" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122081" stop="122358"/>
              <exon start="124078" stop="124094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122122" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122122" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122122" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122174" stop="122358"/>
              <exon start="124078" stop="124119"/>
              <exon start="124286" stop="124531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713720" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATGTACCGTACTTTCAGGATCCAAAAATGTCGAAGCGAG : GGCGTGGAGGTTCTGCCGGAAACAAATTCCGGATGTCACTGGGTTTACCGGTGGCGGCGACGGTGAACTGTGCTGATAACACTGGAGCGAAGAACCTTTACATCATTTCAGTAAAGGGTATAAAGGGTAGGTTGAATCGGTTACCATCTGCTTGTGTAGGTGATATGGTAATGGCTACTGTAAAGAAAGGTAAACCTGATTTGAGGAAGAAAGTGATGCCTGCTGTCATTGTTAGACAACGTAAACCTTGGAGACGAAAGGATGGTGTTTTCATGTACTTTGAAG : ATAATGCTGGAGTGATTGTGAATCCCAAAGGAGAAATGAAAG : GTTCTGCTATCACTGGTCCAATTGGAAAGGAGTGTGCTGATCTATGGCCAAGGATTGCTAGTGCAGCTAATGCAATTGTCTGAACTACTAAGAGTTAGTTAACCTGCAGTTTTGATACCTTTTATTTGGAGTGCTGTTATTGTCATATATACAAACAAATGCAGCAATGTTGTATTGCTCTAAGATTTATAAGTTCATATAATACCCACTTATTTTGCTACTAAATATCACTGTCATTTACTTTTC</gDNA_template>
            <first_frame> *  C  T  V  L  S  G  S  K  N  V  E  A  R :   A  W  R  F  C  R  K  Q  I  P  D  V  T  G  F  T  G  G  G  D  G  E  L  C  *  *  H  W  S  E  E  P  L  H  H  F  S  K  G  Y  K  G  *  V  E  S  V  T  I  C  L  C  R  *  Y  G  N  G  Y  C  K  E  R  *  T  *  F  E  E  E  S  D  A  C  C  H  C  *  T  T  *  T  L  E  T  K  G  W  C  F  H  V  L  *  R :   *  C  W  S  D  C  E  S  Q  R  R  N  E  R :   F  C  Y  H  W  S  N  W  K  G  V  C  *  S  M  A  K  D  C  *  C  S  *  C  N  C  L  N  Y  *  E  L  V  N  L  Q  F  *  Y  L  L  F  G  V  L  L  L  S  Y  I  Q  T  N  A  A  M  L  Y  C  S  K  I  Y  K  F  I  *  Y  P  L  I  L  L  L  N  I  T  V  I  Y  F   </first_frame>
            <second_frame>  N  V  P  Y  F  Q  D  P  K  M  S  K  R   : G  R  G  G  S  A  G  N  K  F  R  M  S  L  G  L  P  V  A  A  T  V  N  C  A  D  N  T  G  A  K  N  L  Y  I  I  S  V  K  G  I  K  G  R  L  N  R  L  P  S  A  C  V  G  D  M  V  M  A  T  V  K  K  G  K  P  D  L  R  K  K  V  M  P  A  V  I  V  R  Q  R  K  P  W  R  R  K  D  G  V  F  M  Y  F  E   : D  N  A  G  V  I  V  N  P  K  G  E  M  K   : G  S  A  I  T  G  P  I  G  K  E  C  A  D  L  W  P  R  I  A  S  A  A  N  A  I  V  *  T  T  K  S  *  L  T  C  S  F  D  T  F  Y  L  E  C  C  Y  C  H  I  Y  K  Q  M  Q  Q  C  C  I  A  L  R  F  I  S  S  Y  N  T  H  L  F  C  Y  *  I  S  L  S  F  T  F  </second_frame>
            <third_frame>   M  Y  R  T  F  R  I  Q  K  C  R  S  E  :  G  V  E  V  L  P  E  T  N  S  G  C  H  W  V  Y  R  W  R  R  R  *  T  V  L  I  T  L  E  R  R  T  F  T  S  F  Q  *  R  V  *  R  V  G  *  I  G  Y  H  L  L  V  *  V  I  W  *  W  L  L  *  R  K  V  N  L  I  *  G  R  K  *  C  L  L  S  L  L  D  N  V  N  L  G  D  E  R  M  V  F  S  C  T  L  K  :  I  M  L  E  *  L  *  I  P  K  E  K  *  K  :  V  L  L  S  L  V  Q  L  E  R  S  V  L  I  Y  G  Q  G  L  L  V  Q  L  M  Q  L  S  E  L  L  R  V  S  *  P  A  V  L  I  P  F  I  W  S  A  V  I  V  I  Y  T  N  K  C  S  N  V  V  L  L  *  D  L  *  V  H  I  I  P  T  Y  F  A  T  K  Y  H  C  H  L  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121943" stop="121982"/>
                    <exon start="122074" stop="122358"/>
                    <exon start="124078" stop="124119"/>
                    <exon start="124286" stop="124368"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPYFQDPKMSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="126798" PGL_stop="128251"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126798" e_stop="127194"/>
            <exon e_start="127813" e_stop="128022"/>
            <exon e_start="128102" e_stop="128251"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126798" e_stop="127194" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127195" i_stop="127812" i_length="618"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127813" e_stop="128022" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.994">
            <gDNA_intron_boundary i_start="128023" i_stop="128101" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="128102" e_stop="128251" e_length="150"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126798" stop="127194"/>
              <exon start="127813" stop="127854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126805" stop="127194"/>
              <exon start="127813" stop="128022"/>
              <exon start="128102" stop="128251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126805" stop="127194"/>
              <exon start="127813" stop="127840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126807" stop="127194"/>
              <exon start="127813" stop="128022"/>
              <exon start="128102" stop="128210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126872" stop="127194"/>
              <exon start="127813" stop="128022"/>
              <exon start="128102" stop="128168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126872" stop="127194"/>
              <exon start="127813" stop="128002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTCAAAAAAAATGGCAAGAAAATTTGGAATTTTCTTTACAATTTTTTGTATTCTTTCAACTTCATGTCTTGGAGATTGGAACATTTTGTCACAACACAAAACCAATAGTGGTCTCCAAATTAGCCTAAAAAATTATTGTGAGAGTTGGAGAATGAATGTTGAGTTACACAACATTAGAGATTATGTTGTTGTTCCTCAAGAATGTGTTGCATATATTGGAAAATATATGACTTCTACTCAATATAAAGTTGATTTTGAAAGAACTATTAATGAATGTATACTTTATATTAGTACTAATTGTATTTTGGAAAATGATGGAAAAGATGCTTGGATTTTTGATATTGATGATACTCTTCTTTCCTCAGTTCCTTACTACAAGAAAAATGGTTTTGG : GGGAAATAAGCTAAATGTGACATCTTTGGAGGATTGGATGAGCCAAGGGAAAGGAACAGCATTGGAACATTCTTTAAAGTTGTTCAATCATCTTAAAGAACTAGGAGTTCAAATCTTTCTTGTTTCTTCGAGAAGAGAACATCTTAGATCCGCCACTGTCGACAATCTTGTCAAAGTTGATTTCTATGGATGGAATAGCCTCATACTAAG : AGATCAAGAAGATGAATGCAAGAATGCACAGACATTCAAGGCAGAGATAAGAAGTAAACTTATAAGTCAAGGTTATAGAATTGTTGGCATTATTGGAGACCAATGGAGTAGCATTAATGGTCTTCCAAGTGCAAAAAGATCATTCAAACT</gDNA_template>
            <first_frame> K  S  Q  K  K  W  Q  E  N  L  E  F  S  L  Q  F  F  V  F  F  Q  L  H  V  L  E  I  G  T  F  C  H  N  T  K  P  I  V  V  S  K  L  A  *  K  I  I  V  R  V  G  E  *  M  L  S  Y  T  T  L  E  I  M  L  L  F  L  K  N  V  L  H  I  L  E  N  I  *  L  L  L  N  I  K  L  I  L  K  E  L  L  M  N  V  Y  F  I  L  V  L  I  V  F  W  K  M  M  E  K  M  L  G  F  L  I  L  M  I  L  F  F  P  Q  F  L  T  T  R  K  M  V  L   : G  E  I  S  *  M  *  H  L  W  R  I  G  *  A  K  G  K  E  Q  H  W  N  I  L  *  S  C  S  I  I  L  K  N  *  E  F  K  S  F  L  F  L  R  E  E  N  I  L  D  P  P  L  S  T  I  L  S  K  L  I  S  M  D  G  I  A  S  Y  *   : E  I  K  K  M  N  A  R  M  H  R  H  S  R  Q  R  *  E  V  N  L  *  V  K  V  I  E  L  L  A  L  L  E  T  N  G  V  A  L  M  V  F  Q  V  Q  K  D  H  S  N  </first_frame>
            <second_frame>  N  L  K  K  N  G  K  K  I  W  N  F  L  Y  N  F  L  Y  S  F  N  F  M  S  W  R  L  E  H  F  V  T  T  Q  N  Q  *  W  S  P  N  *  P  K  K  L  L  *  E  L  E  N  E  C  *  V  T  Q  H  *  R  L  C  C  C  S  S  R  M  C  C  I  Y  W  K  I  Y  D  F  Y  S  I  *  S  *  F  *  K  N  Y  *  *  M  Y  T  L  Y  *  Y  *  L  Y  F  G  K  *  W  K  R  C  L  D  F  *  Y  *  *  Y  S  S  F  L  S  S  L  L  Q  E  K  W  F  W  :  G  K  *  A  K  C  D  I  F  G  G  L  D  E  P  R  E  R  N  S  I  G  T  F  F  K  V  V  Q  S  S  *  R  T  R  S  S  N  L  S  C  F  F  E  K  R  T  S  *  I  R  H  C  R  Q  S  C  Q  S  *  F  L  W  M  E  *  P  H  T  K  :  R  S  R  R  *  M  Q  E  C  T  D  I  Q  G  R  D  K  K  *  T  Y  K  S  R  L  *  N  C  W  H  Y  W  R  P  M  E  *  H  *  W  S  S  K  C  K  K  I  I  Q  T </second_frame>
            <third_frame>   I  S  K  K  M  A  R  K  F  G  I  F  F  T  I  F  C  I  L  S  T  S  C  L  G  D  W  N  I  L  S  Q  H  K  T  N  S  G  L  Q  I  S  L  K  N  Y  C  E  S  W  R  M  N  V  E  L  H  N  I  R  D  Y  V  V  V  P  Q  E  C  V  A  Y  I  G  K  Y  M  T  S  T  Q  Y  K  V  D  F  E  R  T  I  N  E  C  I  L  Y  I  S  T  N  C  I  L  E  N  D  G  K  D  A  W  I  F  D  I  D  D  T  L  L  S  S  V  P  Y  Y  K  K  N  G  F  G :   G  N  K  L  N  V  T  S  L  E  D  W  M  S  Q  G  K  G  T  A  L  E  H  S  L  K  L  F  N  H  L  K  E  L  G  V  Q  I  F  L  V  S  S  R  R  E  H  L  R  S  A  T  V  D  N  L  V  K  V  D  F  Y  G  W  N  S  L  I  L  R :   D  Q  E  D  E  C  K  N  A  Q  T  F  K  A  E  I  R  S  K  L  I  S  Q  G  Y  R  I  V  G  I  I  G  D  Q  W  S  S  I  N  G  L  P  S  A  K  R  S  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126800" stop="127194"/>
                    <exon start="127813" stop="128022"/>
                    <exon start="128102" stop="128249"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKKMARKFGIFFTIFCILSTSCLGDWNILSQHKTNSGLQISLKNYCESWRMNVELHNIRDYVVVPQECVAYIGKYMTSTQYKVDFERTINECILYISTNCILENDGKDAWIFDIDDTLLSSVPYYKKNGFGGNKLNVTSLEDWMSQGKGTALEHSLKLFNHLKELGVQIFLVSSRREHLRSATVDNLVKVDFYGWNSLILRDQEDECKNAQTFKAEIRSKLISQGYRIVGIIGDQWSSINGLPSAKRSFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="131739" PGL_stop="135109"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131739" e_stop="132000"/>
            <exon e_start="132654" e_stop="132822"/>
            <exon e_start="132955" e_stop="133080"/>
            <exon e_start="134653" e_stop="134715"/>
            <exon e_start="134822" e_stop="135109"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="131739" e_stop="132000" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.945">
            <gDNA_intron_boundary i_start="132001" i_stop="132653" i_length="653"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="132654" e_stop="132822" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.988">
            <gDNA_intron_boundary i_start="132823" i_stop="132954" i_length="132"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="132955" e_stop="133080" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="133081" i_stop="134652" i_length="1572"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="134653" e_stop="134715" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="1.000">
            <gDNA_intron_boundary i_start="134716" i_stop="134821" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="134822" e_stop="135109" e_length="288"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131739" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131747" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131749" stop="131961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131752" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131756" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131756" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="134925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131758" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131759" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131759" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131759" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131763" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598718" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131763" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="134827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131763" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131764" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133028"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131768" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="134947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131770" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="134951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131775" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131787" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="134962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131879" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131898" stop="132000"/>
              <exon start="132654" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132784" stop="132822"/>
              <exon start="132955" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132986" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132998" stop="133080"/>
              <exon start="134653" stop="134715"/>
              <exon start="134822" stop="135048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCCTTTACGCCTCTCCGTCGTGAAAAAGCTATACAAAAGGAGAGGATTTTGACGGGAAAACAATGGCCACCGAAGCACCGGTAGAGGCGACGGAGATTCCGTCGGTAGCGGCAGCGGAGACTGTGGAGAAGCAGCCGCATAAGCTAGAGAGGAAGTGGACGTTCTGGTTCGATAACCAGTCTAAACCGAAACAAGGCGTCGCTTGGGGAAGTTCTCTTCGAAAAGCTTATACTTTTGAAACTGTTGAGGAATTCTGGAG : TTTATATGATCAAATATTCAAGCCCAGCAAGGTTACTGTTAATGCGGACTTTCATTTGTTCAAAGCTGGGATTGAGCCCAAATGGGAAGATCCTGAGTGTGCCAATGGTGGCAAGTGGACTGCTACTAGCAGCAGAAAGGCTAATCTCGAGACTATGTGGCTAGAAACA : CTGATGGCATTGGTCGGCGAGCAATTTGATGAGTCAGAAGATATATGTGGGGTGGTTGCTAGTGTGCGTAGGAGTCAGGATAAACTTTCCTTGTGGACTAAGACAGCCACCAATGAAGCAGCTCAG : ATGGGCATTGGTAGGAAGTGGAAGGAGATCATTGATGCCGAAAAGATATCCTATAGTTTCCAT : GATGATTCTAAAAGAGAGAGGTCAGCTAAGAGCCGATATACTGTGTGAAATTTCTTTATCGTGTGGAATTAACACCACTCCTTAAGCTCTTTACCAATACTGAAATTGTACGATTAGCACTTTTTTGCGCTTGTCTGCTGCAAATTTTGATCTTATTGAAATTTATTCGAACTTGATGTATGTTTGGATGTATTGCATTAAAGATTTTGTTCTGATGTTTGTTATTTATGTGGTATCACTTTATATCTCAAGTAGACTCTATGGGAGAAAGCTTAGTCGATTCATTGG</gDNA_template>
            <first_frame> N  S  F  T  P  L  R  R  E  K  A  I  Q  K  E  R  I  L  T  G  K  Q  W  P  P  K  H  R  *  R  R  R  R  F  R  R  *  R  Q  R  R  L  W  R  S  S  R  I  S  *  R  G  S  G  R  S  G  S  I  T  S  L  N  R  N  K  A  S  L  G  E  V  L  F  E  K  L  I  L  L  K  L  L  R  N  S  G   : V  Y  M  I  K  Y  S  S  P  A  R  L  L  L  M  R  T  F  I  C  S  K  L  G  L  S  P  N  G  K  I  L  S  V  P  M  V  A  S  G  L  L  L  A  A  E  R  L  I  S  R  L  C  G  *  K  H :   *  W  H  W  S  A  S  N  L  M  S  Q  K  I  Y  V  G  W  L  L  V  C  V  G  V  R  I  N  F  P  C  G  L  R  Q  P  P  M  K  Q  L  R :   W  A  L  V  G  S  G  R  R  S  L  M  P  K  R  Y  P  I  V  S  M :   M  I  L  K  E  R  G  Q  L  R  A  D  I  L  C  E  I  S  L  S  C  G  I  N  T  T  P  *  A  L  Y  Q  Y  *  N  C  T  I  S  T  F  L  R  L  S  A  A  N  F  D  L  I  E  I  Y  S  N  L  M  Y  V  W  M  Y  C  I  K  D  F  V  L  M  F  V  I  Y  V  V  S  L  Y  I  S  S  R  L  Y  G  R  K  L  S  R  F  I   </first_frame>
            <second_frame>  I  P  L  R  L  S  V  V  K  K  L  Y  K  R  R  G  F  *  R  E  N  N  G  H  R  S  T  G  R  G  D  G  D  S  V  G  S  G  S  G  D  C  G  E  A  A  A  *  A  R  E  E  V  D  V  L  V  R  *  P  V  *  T  E  T  R  R  R  L  G  K  F  S  S  K  S  L  Y  F  *  N  C  *  G  I  L  E  :  F  I  *  S  N  I  Q  A  Q  Q  G  Y  C  *  C  G  L  S  F  V  Q  S  W  D  *  A  Q  M  G  R  S  *  V  C  Q  W  W  Q  V  D  C  Y  *  Q  Q  K  G  *  S  R  D  Y  V  A  R  N   : T  D  G  I  G  R  R  A  I  *  *  V  R  R  Y  M  W  G  G  C  *  C  A  *  E  S  G  *  T  F  L  V  D  *  D  S  H  Q  *  S  S  S   : D  G  H  W  *  E  V  E  G  D  H  *  C  R  K  D  I  L  *  F  P   : *  *  F  *  K  R  E  V  S  *  E  P  I  Y  C  V  K  F  L  Y  R  V  E  L  T  P  L  L  K  L  F  T  N  T  E  I  V  R  L  A  L  F  C  A  C  L  L  Q  I  L  I  L  L  K  F  I  R  T  *  C  M  F  G  C  I  A  L  K  I  L  F  *  C  L  L  F  M  W  Y  H  F  I  S  Q  V  D  S  M  G  E  S  L  V  D  S  L  </second_frame>
            <third_frame>   F  L  Y  A  S  P  S  *  K  S  Y  T  K  G  E  D  F  D  G  K  T  M  A  T  E  A  P  V  E  A  T  E  I  P  S  V  A  A  A  E  T  V  E  K  Q  P  H  K  L  E  R  K  W  T  F  W  F  D  N  Q  S  K  P  K  Q  G  V  A  W  G  S  S  L  R  K  A  Y  T  F  E  T  V  E  E  F  W  S :   L  Y  D  Q  I  F  K  P  S  K  V  T  V  N  A  D  F  H  L  F  K  A  G  I  E  P  K  W  E  D  P  E  C  A  N  G  G  K  W  T  A  T  S  S  R  K  A  N  L  E  T  M  W  L  E  T  :  L  M  A  L  V  G  E  Q  F  D  E  S  E  D  I  C  G  V  V  A  S  V  R  R  S  Q  D  K  L  S  L  W  T  K  T  A  T  N  E  A  A  Q  :  M  G  I  G  R  K  W  K  E  I  I  D  A  E  K  I  S  Y  S  F  H  :  D  D  S  K  R  E  R  S  A  K  S  R  Y  T  V  *  N  F  F  I  V  W  N  *  H  H  S  L  S  S  L  P  I  L  K  L  Y  D  *  H  F  F  A  L  V  C  C  K  F  *  S  Y  *  N  L  F  E  L  D  V  C  L  D  V  L  H  *  R  F  C  S  D  V  C  Y  L  C  G  I  T  L  Y  L  K  *  T  L  W  E  K  A  *  S  I  H  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C09HBa0026F17.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131765" stop="132000"/>
                    <exon start="132654" stop="132822"/>
                    <exon start="132955" stop="133080"/>
                    <exon start="134653" stop="134715"/>
                    <exon start="134822" stop="134869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYTKGEDFDGKTMATEAPVEATEIPSVAAAETVEKQPHKLERKWTFWFDNQSKPKQGVAWGSSLRKAYTFETVEEFWSLYDQIFKPSKVTVNADFHLFKAGIEPKWEDPECANGGKWTATSSRKANLETMWLETLMALVGEQFDESEDICGVVASVRRSQDKLSLWTKTATNEAAQMGIGRKWKEIIDAEKISYSFHDDSKRERSAKSRYTV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="135740" PGL_stop="135503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135740" e_stop="135503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="135740" e_stop="135503" e_length="238"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135740" stop="135503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGCAAGTCAATAGGAGCAGATCAGAAGCAAAGGCAAGGATTAATTCGATTGGCAAAGAAGAATGGTGAAAAACTTGGATTTCTTGCTTGATGGATGGCACAAAATTAATCATTATTGCCAATGTGTTATGATCAAATAGCTATAGCCTCTTTTGTGTAATTGAGACAAATCAATCAGATACAACTTTAATTTTATGTATTATTCAAACATATATATATGTGCTTTGTAGTCTAGAAA</gDNA_template>
            <first_frame> L  Q  V  N  R  S  R  S  E  A  K  A  R  I  N  S  I  G  K  E  E  W  *  K  T  W  I  S  C  L  M  D  G  T  K  L  I  I  I  A  N  V  L  *  S  N  S  Y  S  L  F  C  V  I  E  T  N  Q  S  D  T  T  L  I  L  C  I  I  Q  T  Y  I  Y  V  L  C  S  L  E  </first_frame>
            <second_frame>  C  K  S  I  G  A  D  Q  K  Q  R  Q  G  L  I  R  L  A  K  K  N  G  E  K  L  G  F  L  A  *  W  M  A  Q  N  *  S  L  L  P  M  C  Y  D  Q  I  A  I  A  S  F  V  *  L  R  Q  I  N  Q  I  Q  L  *  F  Y  V  L  F  K  H  I  Y  M  C  F  V  V  *  K </second_frame>
            <third_frame>   A  S  Q  *  E  Q  I  R  S  K  G  K  D  *  F  D  W  Q  R  R  M  V  K  N  L  D  F  L  L  D  G  W  H  K  I  N  H  Y  C  Q  C  V  M  I  K  *  L  *  P  L  L  C  N  *  D  K  S  I  R  Y  N  F  N  F  M  Y  Y  S  N  I  Y  I  C  A  L  *  S  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C09HBa0026F17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 530 chains have been computed
$ 
$ memory statistics:
$ 591280 bytes spliced alignments in total
$ 248 spliced alignments have been stored
$ 2384 bytes was the average size of a spliced alignment
$ 39720 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1588 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 564 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-02 15:49:42
-->
